BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046830
(518 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/544 (85%), Positives = 484/544 (88%), Gaps = 35/544 (6%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
+D+EEE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIRPESQHN
Sbjct: 14 DDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHN 73
Query: 70 PGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV 120
PG QSDFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYVDVTKRV
Sbjct: 74 PGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRV 133
Query: 121 IKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
IKKGHDGEEV PIMLRSSYCTLYQNS+K LTELGECP D+GGYFIIN
Sbjct: 134 IKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIIN 193
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQEKMSTNHVYVFKKRQPNKYA+VAEV SMA++QNRPPST+FV MLSRTSAKG
Sbjct: 194 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKG 253
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GSSGQYI ATLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRPSLEEAF
Sbjct: 254 GSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAF 313
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQNQQ YIGKRGATVGVTREK IKYAKEILQKEMLPHVG G++CETKKAYYFG+II
Sbjct: 314 VIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYII 373
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVR YVQKCVDNGKDV
Sbjct: 374 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDV 433
Query: 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSW----- 457
NLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 434 NLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG 493
Query: 458 ---KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGT 514
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEFLEEWGT
Sbjct: 494 REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGT 553
Query: 515 ENFE 518
ENFE
Sbjct: 554 ENFE 557
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/550 (83%), Positives = 484/550 (88%), Gaps = 35/550 (6%)
Query: 4 EEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIR 63
E + +E+D++EE TQE+AWAVISAYFEEKGLVRQQLDSFDEF QNTMQEIVDESADIEIR
Sbjct: 9 EPQYVEDDDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIR 68
Query: 64 PESQHNPGQQSDFAE---------IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYV 114
PESQHNPG QSDFAE IYLSKPMMTESDGETATLF KAARLRNLTYSAPLYV
Sbjct: 69 PESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYV 128
Query: 115 DVTKRVIKKGHDGEEV--------------PIMLRSSYCTLYQNSQKALTELGECPYDEG 160
DVTKRVIKKGHDGEEV PIMLRSSYCTL+QNS+K LTELGECPYD+G
Sbjct: 129 DVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQG 188
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EV SMAE+QNRPPST+FV ML+
Sbjct: 189 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLA 248
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRP 280
R SAKGGSSGQYI TLPYIRTEIPIII+FRALGF AD+DILEHICYDF DTQMMELLRP
Sbjct: 249 RASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRP 308
Query: 281 SLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAY 336
SLEEAF IQNQ YIGKRGATVGVT+EK IKYA++ILQKEMLPHVG G+ CETKKAY
Sbjct: 309 SLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAY 368
Query: 337 YFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV 396
YFG+IIHRLLLCALGRR EDDRDHYGNKRLDLAGPLLGGLFR LFRKLT DVRSYVQKCV
Sbjct: 369 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 428
Query: 397 DNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
DNGK+VNLQFAIKAKTIT GLKYSLATGNWGQ NAAGTRAGVSQVLN LTYAST ++
Sbjct: 429 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 488
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT+GSAAYPILEF
Sbjct: 489 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 548
Query: 509 LEEWGTENFE 518
LEEWGTENFE
Sbjct: 549 LEEWGTENFE 558
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/554 (59%), Positives = 413/554 (74%), Gaps = 44/554 (7%)
Query: 2 MMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIE 61
MM ++ +++ + +QE+ W VISAYF+EKGLVRQQLDSFDEF QNTMQEI+DES I
Sbjct: 5 MMNDDS-QDNPHADISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPIT 63
Query: 62 IRPESQHNPGQ----------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAP 111
+RPESQH+PGQ F +IYLSKP E DG + + AR+RNLTYSAP
Sbjct: 64 LRPESQHHPGQAVVSNNVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAP 122
Query: 112 LYVDVTKRVI----KKGHDGE-----------EVPIMLRSSYCTLYQNSQKALTELGECP 156
L+VD+TK V+ KG + +VPIMLRS YC L + + LT +GEC
Sbjct: 123 LFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECS 182
Query: 157 YDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV 216
+D+GGYFIINGSEKVLIAQEKM+ NHVYVFKK P+KY+YVAE+ S E+ +RP ST+++
Sbjct: 183 FDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYL 242
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMME 276
ML T+ G G I AT+PYI+ ++P+II+FRALGF AD+DILEHICYDF+D QMM+
Sbjct: 243 KMLHNTNK--GPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMD 298
Query: 277 LLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCET 332
L+RPSLEE+F IQ+Q+ Y+GKRG+T+G TRE+ IK+A+E+LQKEMLPHV +F ET
Sbjct: 299 LMRPSLEESFVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYET 357
Query: 333 KKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYV 392
KKA+YFG+I HRLLL +L RR DDRDH+ NKRLDLAGPLLG LFR LF+KLT DVR Y+
Sbjct: 358 KKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYL 417
Query: 393 QKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFT 452
Q+C+D K+ A+K+KTIT GLKYSLATGNWG + GT++GV+QVLN LT+AST +
Sbjct: 418 QRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLS 477
Query: 453 YYLSW--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYP 504
+ KLAKPRQLHN+ WG++CP+ETPEGQACGLVKNLA+M YI++GSA+ P
Sbjct: 478 HLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQP 537
Query: 505 ILEFLEEWGTENFE 518
ILEFLEEW TEN E
Sbjct: 538 ILEFLEEWTTENLE 551
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus
GN=Polr2b PE=2 SV=2
Length = 1174
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens
GN=POLR2B PE=1 SV=1
Length = 1174
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/550 (60%), Positives = 398/550 (72%), Gaps = 36/550 (6%)
Query: 4 EEERLEEDEEEETT---QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
E+ + +ED++E T QE W VIS+YF+EKGLVRQQLDSFDEF Q ++Q IV+++ I
Sbjct: 6 EDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPI 65
Query: 61 EIRPESQHNPGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
+++ E+QH G+ + F +IYLSKP E DG + + ARLRNLTYSAPLY
Sbjct: 66 DLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLY 125
Query: 114 VDVTKRVIKKGHDGEE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
VD+TK VIK+G + + +PIMLRS+YC L + + L EL ECP D GGYF
Sbjct: 126 VDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF 185
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSR-- 221
IINGSEKVLIAQEKM+TN VYVF K+ +KYAY E S E+ +RP STI+V ML+R
Sbjct: 186 IINGSEKVLIAQEKMATNTVYVFAKKD-SKYAYTGECRSCLENSSRPTSTIWVSMLARGG 244
Query: 222 TSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPS 281
AK + GQ I ATLPYI+ E+PIII+FRALGF +D DILEHI YDF+D +MME+++PS
Sbjct: 245 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPS 304
Query: 282 LEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYY 337
L+EAF IQ Q +IG RGA GVT+EK IKYAKE+LQKEMLPHVG DFCETKKAY+
Sbjct: 305 LDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYF 364
Query: 338 FGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVD 397
G+++HRLLL ALGRR DDRDHYGNKRLDLAGPLL LFR +F+ L +VR Y QK +D
Sbjct: 365 LGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID 424
Query: 398 NGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYLS 456
GKD NL+ AIK + I+ GLKYSLATGNWG Q A RAGVSQVLN LT+AST ++
Sbjct: 425 RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRR 484
Query: 457 W--------KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEF 508
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEF
Sbjct: 485 LNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEF 544
Query: 509 LEEWGTENFE 518
LEEW EN E
Sbjct: 545 LEEWSMENLE 554
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 628 bits (1620), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/536 (60%), Positives = 382/536 (71%), Gaps = 33/536 (6%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-- 72
E QE W VI+AYF+EKGLVRQQLDSFDEF Q ++Q IV++S IE++ E+QH G+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 73 -----QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG 127
F +IYLSKP E DG + + ARLRNLTYSAPLYVD+TK +G D
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 128 EE----------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEK 177
E +PIMLRS+YC L Q + + LTEL ECP D GGYFIINGSEKVLIAQEK
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 178 MSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTS--AKGGSSGQYIHA 235
M+TN VYVF + KYA+ E+ S E +RP ST++V M++R S K + GQ I A
Sbjct: 201 MATNTVYVFSMKD-GKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
LPYI+ EIPI+I+FRALGF AD DILEHI YDF D +MME+++PSL+EAF +Q Q
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
+IG RGA GVT++K IKYAKEILQKEMLPHVG DFCETKKAY+ G+++HRLLL +LG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYGNKRLDLAGPLL LFR LF+ L +VR Y QK +D GKD NL+ AIK
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTN 439
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--------LSWKLAKP 462
IT GL+YSLATGNWG Q A RAGVSQVLN LT+AST ++ KLAKP
Sbjct: 440 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKP 499
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEG A GLVKNLALM YI++GS PILEFLEEW EN E
Sbjct: 500 RQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 555
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 603 bits (1555), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/547 (54%), Positives = 383/547 (70%), Gaps = 45/547 (8%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ- 72
E TQE+ W VIS++FEE L RQQL SFDEF QNTMQEIVD+ + + + +QH Q
Sbjct: 10 ETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQG 69
Query: 73 ------QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHD 126
+ +F +IYLS+P MTE+DG T T+F + ARLRNLTYS+PLYVD+ K+V+
Sbjct: 70 DVTRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADS 129
Query: 127 GE----------------------EVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
++PIMLRS++C L S L +L ECPYD+GGYFI
Sbjct: 130 NVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFI 189
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKV+IAQE+ + N V VFKK P+ AYVAE+ S E +R S++ + +++R +
Sbjct: 190 INGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE 249
Query: 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEE 284
+SGQ I ATLPYIR++IPI+I+FRALG D DILEHICYD D QM+E+++P +EE
Sbjct: 250 ---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEE 306
Query: 285 AFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGH 340
AF IQ++ YIGKRG+T GVTREK ++YA +ILQKE+LPH+ T + ET+KA++ G+
Sbjct: 307 AFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGY 366
Query: 341 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400
+IHR+LLCAL RR DDRDH+G KRLDLAGPLL LFR LFRK+T DV Y+QKCV+ +
Sbjct: 367 MIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNR 426
Query: 401 DVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY----- 454
+ NL A+K+ IT GL+YSLATGNWG Q + R GVSQVLN T+AST ++
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 455 ---LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEE 511
KLAKPRQLHN+ WGM+CPAETPEGQACGLVKNL+LM Y+++GS + PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 512 WGTENFE 518
WG E E
Sbjct: 547 WGLETLE 553
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis
elegans GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 313/549 (57%), Positives = 381/549 (69%), Gaps = 34/549 (6%)
Query: 3 MEEERLEEDEE--EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI 60
M+ + +++ +E E QE W VISAYF+EKGLVRQQLDSFDEF Q +Q IV++S +
Sbjct: 13 MDGDYIDDSDEISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPV 72
Query: 61 EIRPESQH------NPGQQS-DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
E++ E+QH NP + S F +IYLSKP E DG + ARLRNLTY++PLY
Sbjct: 73 ELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLY 132
Query: 114 VDVTKRVIKKGHDGEEV---------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFI 164
VD+TK V + E+V P+MLRSSYC L + + LTEL ECP D GGYF+
Sbjct: 133 VDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFV 192
Query: 165 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224
INGSEKVLIAQEKM+TN VYVF + KYA+ E S E+ +RP ST++V ML+R
Sbjct: 193 INGSEKVLIAQEKMATNTVYVFSMKD-GKYAFKTECRSCLENSSRPTSTMWVNMLARGGG 251
Query: 225 KGGSS--GQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSL 282
G + GQ I LPYI+ EIPI+I+FRALGF +D DIL HI YDF D +MME+++PSL
Sbjct: 252 GGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSL 311
Query: 283 EEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYF 338
+EAF IQ Q +IG RGA GVTRE+ IKYA+EILQKE+LPHVG + CETKKA++
Sbjct: 312 DEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFI 371
Query: 339 GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398
G+++HRLLL ALGRR DDRDH GNKRLDLAGPLL LFR+LFR L ++R QK ++
Sbjct: 372 GYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK 431
Query: 399 GKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY--- 454
D L +K TIT GL YSLATGNWG Q A +RAGVSQVLN LTY +T ++
Sbjct: 432 NDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRA 491
Query: 455 -----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFL 509
KLAKPRQLHN+QWGM+CPAETPEGQA GLVKNLALM YI++GS PILEFL
Sbjct: 492 NSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFL 551
Query: 510 EEWGTENFE 518
EEW EN E
Sbjct: 552 EEWSMENLE 560
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 287/553 (51%), Positives = 380/553 (68%), Gaps = 47/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
+D+ T E+ W VIS++F+EKGLV QQLDSFDEF ++T+QE+V E + + + +QH
Sbjct: 12 DDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHT 71
Query: 70 PGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ + F +IY+SKP TE DG T +F + ARLRNLTYS+PLYVD+TKRV+K
Sbjct: 72 SEEDHENRRYEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLK 131
Query: 123 KGHDG---------------EE---------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ EE VPIMLRS +C L + EL ECPYD
Sbjct: 132 SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYD 191
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYF+INGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R S++ + +
Sbjct: 192 MGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKL 251
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R + +S + I ATLPYI+ +IPI+I+FRALG D DILEHICYD D QM+E+L
Sbjct: 252 YGR--EEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEML 309
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +EE F IQ ++ +IG+RGA +G+ REK I+YAK+ILQKE+LP++ + ET+K
Sbjct: 310 KPCVEEGFVIQEREVALDFIGRRGA-LGIKREKRIQYAKDILQKELLPNITQDEGFETRK 368
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++++RLLLCAL R+ DDRDH+G KRLDLAGPLL LFR LF+KLT D+ +Y+Q+
Sbjct: 369 AFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQR 428
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
CV+N K NL A+K++TIT GL+YSLATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 429 CVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 488
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
K+AKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ + PI
Sbjct: 489 LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPI 548
Query: 506 LEFLEEWGTENFE 518
L FLEEWG E E
Sbjct: 549 LYFLEEWGMEPLE 561
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 556 bits (1433), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/536 (51%), Positives = 374/536 (69%), Gaps = 41/536 (7%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
E T+E +W++IS++FE+KGLVRQQLDSFD+F + MQE+++ES I + +S G
Sbjct: 2 ESAFTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIV--QSAPTAGI 59
Query: 73 QSD------FAEIYLSKP-MMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK-- 123
++ F +IY+SKP + TESDG T T+F AR+R+LTY++PL++DVTK + +
Sbjct: 60 ETQKRIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELG 119
Query: 124 ---GHDGEEVP-----IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175
H VP +MLRSSYC LY K L +LGECPYD+GGYFI+NGSEKV++AQ
Sbjct: 120 VVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQ 179
Query: 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
E+M++N VYVFKK QP Y + AE+ S+ E +R PST+ S K S I
Sbjct: 180 ERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTL--------SMKLCRSPGVIRV 231
Query: 236 TLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ--- 292
+LP ++ ++P+ +L+RALGF +D++I++HI Y+ D +M ELL+ S+EE +Q+Q
Sbjct: 232 SLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQNVAL 290
Query: 293 -YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
YIGKR A +G +EK I AK++L KE+LPH+GT +FCETKKAY+ G+I+ RLLL ALG
Sbjct: 291 DYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAK 411
RR DDRDHYG KR+DL+GPLL LFRTLF+KL D ++QKC++NG++ N+ +KA
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALGLKAS 410
Query: 412 TITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKP 462
IT G +Y+LATGNWG Q A TRAGV+QVLN + ST ++ KLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
RQLHN+ WGM+CPAETPEGQACGLVKNL+LM YI++GS++ P++EFLEE G E+ E
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLE 526
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 285/553 (51%), Positives = 373/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
E+E T E+ WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 17 EEENAPITAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHT 76
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
Q + F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDVTKR
Sbjct: 77 TEQDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYE 136
Query: 120 -VIKKGHDGE--------------------EVPIMLRSSYCTLYQNSQKALTELGECPYD 158
V G D +PIMLRS C L ++ L +L ECP+D
Sbjct: 137 AVDVPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFD 196
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 197 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 256
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R S SS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 257 YGRES----SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 312
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 313 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 372
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ Y+Q+
Sbjct: 373 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQR 432
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 433 TVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 492
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 493 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPI 552
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 553 ITFLSEWGMEPLE 565
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1
SV=2
Length = 1224
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/553 (50%), Positives = 375/553 (67%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 19 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 78
Query: 70 PGQQS-------DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR--- 119
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR
Sbjct: 79 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 138
Query: 120 -------------VIKKGHDGEE--------VPIMLRSSYCTLYQNSQKALTELGECPYD 158
+ ++ D E +PIMLRS C L + ++ L +L ECP+D
Sbjct: 139 AIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFD 198
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 199 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 258
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
R GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 259 YGRE----GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 314
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 315 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 374
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLF+KLT D+ Y+Q+
Sbjct: 375 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR 434
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTY 453
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 435 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494
Query: 454 Y--------LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 495 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 554
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 555 ITFLSEWGMEPLE 567
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 278/545 (51%), Positives = 372/545 (68%), Gaps = 47/545 (8%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-- 74
T E++W VISA+F EKGLV QQLDSF++F T+Q+++ E + + + +QH +
Sbjct: 22 TAEDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNIS 81
Query: 75 -----DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKR---------- 119
F +IYL+KP MTESDG + ++ + ARLRNLTY++ L+V++ KR
Sbjct: 82 RKYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGR 141
Query: 120 ------VIKKGHDGEE-------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIIN 166
+ ++ D EE VPIMLRS YC L S+ L L ECP+D GGYFIIN
Sbjct: 142 DLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201
Query: 167 GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKG 226
GSEKVLIAQE+ + N V VFKK P+ +++AE+ S E +R ST+ V + R
Sbjct: 202 GSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGRE---- 257
Query: 227 GSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAF 286
GS+ + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L+P +EE F
Sbjct: 258 GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGF 317
Query: 287 FIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++KA++ G++I
Sbjct: 318 VIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 377
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLFRKLT D+ ++Q+ V+ KD
Sbjct: 378 NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDF 437
Query: 403 NLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFTYY------- 454
NL+ A+KA TIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST ++
Sbjct: 438 NLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 497
Query: 455 -LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI+ FL EWG
Sbjct: 498 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWG 557
Query: 514 TENFE 518
E E
Sbjct: 558 MEPLE 562
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 186/501 (37%), Positives = 272/501 (54%), Gaps = 48/501 (9%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
E WA+ ++F+ +GLVRQ LDSF++F +N +Q+++ E +I PG + +
Sbjct: 5 ESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI-----VTEVPGLKIKLGK 59
Query: 79 IYLSKPMMTESD-GETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EV 130
I KP + E+D G + ARLRNLTYS+P+++ + ++ +GE ++
Sbjct: 60 IRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIP--VENNIEGEPIEIYIGDL 117
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
PIML+S L E+GE P D GGYFI+NGSEKV+IAQE ++TN V V +
Sbjct: 118 PIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKS 177
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
+ +VA+V S A M+ R S+ Q AT+P IP I+
Sbjct: 178 GSNITHVAKVTSSAAGYR------VQVMIERLK---DSTIQISFATVP---GRIPFAIIM 225
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTRE 306
RALGF D DI+ + D Q+ L PSLE+A I + + +IG R A +G RE
Sbjct: 226 RALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEALDFIGNRVA-IGQKRE 281
Query: 307 KMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRL 366
I+ A++++ K LPH+GT KK YY ++++L LGRR DD+DHY NKR+
Sbjct: 282 NRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRV 341
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
LAG L LFR F+ D+ ++K G+ ++L ++A IT ++++LATGNW
Sbjct: 342 RLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNW 401
Query: 427 GQGNAAGTRAGVSQVLNCLTYASTFTYYL----SWKLAKP----RQLHNSQWGMMCPAET 478
G R GVSQ+L+ + S ++ S +P R LH +QWG MCP ET
Sbjct: 402 -----VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFET 456
Query: 479 PEGQACGLVKNLALMVYITIG 499
PEG GLVKNLAL+ +++G
Sbjct: 457 PEGPNSGLVKNLALLAQVSVG 477
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 184/529 (34%), Positives = 287/529 (54%), Gaps = 53/529 (10%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
+ T ++ W V+ AY++EKGLVRQ LDS++ F + MQE++DE + +P+ P +
Sbjct: 10 DVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGV--KPDI---PDFEV 64
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV---- 130
F ++ L +P E+ G+ L+ AR+RNLTYSAP+Y+++ V + EV
Sbjct: 65 KFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIGE 124
Query: 131 -PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
PIML+S C LY S + L +LGE P D GGYFI+NGSE+V+++ E ++ N V +
Sbjct: 125 LPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDE 184
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ N+ +A+ S + +++ K G ++ LP + + + +
Sbjct: 185 RQNRI--IAKCFSYRHG--------YRALITVERRKDG----ILYVKLPNVPRPVKFVYV 230
Query: 250 FRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTR 305
RALG +D +I+E + D ++ +L +LE+A + Q+ YIGK + G +
Sbjct: 231 MRALGLLSDREIVEAVS---DDPRIQHVLFDNLEDASDVTTQEEALDYIGKL-SLPGQPK 286
Query: 306 EKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKR 365
E ++ A+ I+ +LPH+G + KAYY G + R+L +LG R EDD+DHY NKR
Sbjct: 287 EYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKR 346
Query: 366 LDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV----NLQF----AIKAKTITGGL 417
L LAG LL LFR F +L D++ + K + N+Q +I+ ++ +
Sbjct: 347 LKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERI 406
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAK------PRQLHNSQ 469
+++LATG+W G R GVSQ+L+ Y ST ++ ++ L++ R LH +
Sbjct: 407 EHALATGSW-----PGGRTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTH 461
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
WG +CP ETPEG CGLVKNLALM IT G + E+LE G E
Sbjct: 462 WGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVREYLERLGVVPIE 510
>sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB2 PE=3 SV=1
Length = 519
Score = 288 bits (736), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 174/533 (32%), Positives = 285/533 (53%), Gaps = 60/533 (11%)
Query: 15 ETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS 74
++ ++ AW ++ A+F++ LV + S+++F N +QEI+D S IE+ +
Sbjct: 5 KSMKKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL-----EQGKYRV 59
Query: 75 DFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----- 129
+ ++ + KP + E+DG + ++ ARLRNLTYSA + +++ R++K+G E
Sbjct: 60 ETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEGGPETEFEKVY 117
Query: 130 ---VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 186
+P+ML+S C L+ S+K L E GE P D GGYFI+NGSE+ ++ E+++ N + +
Sbjct: 118 IGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEIAPNKIILE 177
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPI 246
+ + ++ A V S+ F +S K +G ++ + PY+ EIP+
Sbjct: 178 RIGEEDENRARAIVTSIRSG--------FRARISLEYRKPRKTGVFLRISFPYVPGEIPL 229
Query: 247 IILFRALGFTADEDILEHICYDFQ-------DTQ------------MMELLRPSLEEAFF 287
+IL RALG D++I+ I DF D Q M EL E
Sbjct: 230 VILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKKEMKELDEEDRREYLI 289
Query: 288 IQNQQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
+YIG R A G+T + IK A++++ + +LPH+GT +KA Y + LL
Sbjct: 290 RSAIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLLQ 348
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
G R D+DHY NKRL ++G L+ L R F L+ D+ +++ + GK+ +++ A
Sbjct: 349 VISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSLARGKEPSVKQA 408
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----- 462
+++ +T LK+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 409 VRSDVLTENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHM--RRVVSPLSRSQ 461
Query: 463 -----RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
R LH +Q+G +CP ETPEG CGLVKNLAL+ I+ GS A + E ++
Sbjct: 462 PHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALLAKISEGSDASEVEEVIK 514
>sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB2 PE=3 SV=1
Length = 515
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 175/539 (32%), Positives = 290/539 (53%), Gaps = 65/539 (12%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS-DF 76
++ AW ++ A+F++ LV + S+++F N +QEI+D S IE+ GQ + +
Sbjct: 2 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIEL------EQGQYTVET 55
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG---------HDG 127
++ + KP + E+DG + ++ ARLRNLTYSA + +++ R++K+G H G
Sbjct: 56 GKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM--RLLKEGGSETEFEKVHIG 113
Query: 128 EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187
E +P+ML+S C L+ + L E GE P D GGYFI+N SE+ ++ E+++ N + + +
Sbjct: 114 E-LPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVNASERSIVTMEEIAPNKIILER 172
Query: 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247
+ ++ A V S+ F +S K +G ++ + PY+ E+P++
Sbjct: 173 IGEEDEKRARAIVTSIRSG--------FRARISLEYRKPRKTGVFLRISFPYVPGELPLV 224
Query: 248 ILFRALGFTADEDILEHICYDFQ------DTQMMELLRPSLEE-------------AFFI 288
IL RALG D++I+ I DF D + L + L+ + I
Sbjct: 225 ILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDKLKLDSDKMEEEMDEEERREYLI 284
Query: 289 QNQ-QYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
++ +YIG R A G+T + IK A++++ + +LPH+GT +KA Y + LL
Sbjct: 285 RSAIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPDKRLEKAVYLAEMTEMLLQ 343
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA 407
G R D+DHY NKRL ++G L+ LFR F LT D+ +++ + GK+ +++ A
Sbjct: 344 VISGERKPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYRLERSLARGKEPSVKQA 403
Query: 408 IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----- 462
+++ ++ LK+++ATGNW G RAGVSQ+L+ +Y T ++ ++ P
Sbjct: 404 VRSDVLSENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHM--RRVVSPLSRSQ 456
Query: 463 -----RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
R LH +Q+G +CP ETPE CGLVKNLALM I+ GS I E +++ G N
Sbjct: 457 PHFEARDLHPTQFGKICPNETPESPNCGLVKNLALMAKISEGSDPDEIEEVIKKMGVIN 515
>sp|P41558|RPOB2_METVS DNA-directed RNA polymerase subunit B'' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB2 PE=3 SV=1
Length = 499
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 173/520 (33%), Positives = 281/520 (54%), Gaps = 53/520 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E+ ++ A+F E LV+ +DS+D+F +N +Q I+DE +E ++ G + F ++
Sbjct: 2 ESRVIVDAFFRENSLVKHHIDSYDDFVENKIQGIIDEVTGVE----TEIKGGYKVSFGKV 57
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE----------E 129
++KP+ E+DG + AR+RNL YSAPLY+++ +I +G + + E
Sbjct: 58 RVTKPINKEADGSVKEITPMEARIRNLAYSAPLYLEMIP-LIGEGDEEKTLSPIEVYIGE 116
Query: 130 VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 189
+P+ML + C L S++ + GE P D GYFI+NGSEK ++AQE + N + K
Sbjct: 117 LPVMLGAKICHLSGKSEEDMINYGEDPKDPLGYFIVNGSEKAVVAQEDLIPNRILCEKVE 176
Query: 190 QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIIL 249
+ NK +A+V S F + + + G ++ + P + + IP++IL
Sbjct: 177 KNNKIVDIAKVFSTRHG--------FRALCTVERSPDG----LLNVSFPGMPSTIPLVIL 224
Query: 250 FRALGFTADEDILEHICYDFQDTQMMEL---LRPSLEEAFFIQNQ---QYIGKRGATVGV 303
RALG +D +I+E I + T +M+L L+ + EE + ++IGKR A G
Sbjct: 225 MRALGAESDREIMELISD--EPTVVMQLVANLQEAREEHGINTTEDALEHIGKRVAP-GQ 281
Query: 304 TREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGN 363
+E +K A+ IL +LPH+G K Y G + + LG R EDD+DHY N
Sbjct: 282 PKEYKLKRAETILCNYLLPHMGIESEKLGAKCKYLGRMAKNSIELYLGSRVEDDKDHYAN 341
Query: 364 KRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLAT 423
KRL LAG L+ LFR F +L D++ +++ K+ ++Q A+++ +T +++++AT
Sbjct: 342 KRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMAT 401
Query: 424 GNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMM 473
GNW G R GVSQ+L+ +Y +T + ++ P R LH +QWG +
Sbjct: 402 GNW-----VGGRTGVSQLLDRTSYLATVSQL--RRVVSPLSRSQPHFEARDLHATQWGKI 454
Query: 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
CP+ETPEG CGLVKNLA+M +T I++ ++E G
Sbjct: 455 CPSETPEGPNCGLVKNLAVMCKVTTDEEDEGIIQLIKEIG 494
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED 522
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 183/531 (34%), Positives = 276/531 (51%), Gaps = 61/531 (11%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T EE W ++ A+ + KGLV+Q +DSF+ F +++I+ + + S +P +
Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVT----SDADPMWYLKY 77
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVP 131
IY+ P + ES T + RLR++TYSAP+ VD+ ++R+I+ +P
Sbjct: 78 LNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMP 137
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
IMLRSS C L + +L ECP D GGYFI+ G EKV++ QE++S N + V R
Sbjct: 138 IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADR-- 195
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI-HATLPYIRTEIPIIILF 250
K A A V S + SRT+ Y+ H TL +IPI+I+F
Sbjct: 196 -KGAVGASVTSSTHEKK-----------SRTNMAVKQGRFYLRHNTL---SEDIPIVIIF 240
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKRGATVGVT 304
+A+G +D++I++ I + +M PSLEE F Q Q +YIG + V
Sbjct: 241 KAMGVESDQEIVQMIG---TEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNK-----VR 292
Query: 305 REKM---------IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAE 355
R++M I+ A+E+L +L HV +F K Y ++ R++L A G
Sbjct: 293 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL-AQGDNKV 351
Query: 356 DDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTI 413
DDRD+YGNKRL+LAG LL LF LF+K +++ + + + ++ I
Sbjct: 352 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQI 411
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQL 465
T G+ +++TGNW R GV+QVL+ L+Y S + + K++ PR L
Sbjct: 412 TNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSL 471
Query: 466 HNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTEN 516
SQWGM+CP++TPEG+ACGLVKNLALM +IT PI++ G E+
Sbjct: 472 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 522
>sp|Q58444|RPOB2_METJA DNA-directed RNA polymerase subunit B'' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB2 PE=3 SV=1
Length = 498
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 171/513 (33%), Positives = 275/513 (53%), Gaps = 48/513 (9%)
Query: 24 VISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 83
++ AYF+E GL+ Q++S+++F +N +Q+I+DE IE ++ G + +I + K
Sbjct: 7 LVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYIE----TEITGGYKVKLGKIKVGK 62
Query: 84 PMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE----------VPIM 133
P++ E+DG + AR+R+LTYS PLY+++T +I +G D E +P+M
Sbjct: 63 PVIKEADGSIRPITPMEARIRDLTYSVPLYLEMTP-IIGEGEDAREGETVEVYIGELPVM 121
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
L S C LY S++ L +LGE P D GYFIING+EKVLI QE + N + K + K
Sbjct: 122 LGSKICHLYGKSREELIDLGEDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAERSGK 181
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253
VA+V S F + + G ++AT P + +IP++IL +AL
Sbjct: 182 IVDVAKVFSTRHG--------FRALCTVERHPDG----LLYATFPGMPGQIPLVILMKAL 229
Query: 254 GFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ---QYIGKRGATVGVTREKMIK 310
G D+DI+E I + +++ ++ EE + ++IGKR A G ++ +K
Sbjct: 230 GAETDKDIIESIDDERFFMEIVLNIQEIREEHNINSPEDALEFIGKRVAP-GQAKDYRLK 288
Query: 311 YAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAG 370
A+ +L +LPH+G KK + G + L G R EDD+DHY KR LAG
Sbjct: 289 RAETVLCNYLLPHLGVTKEDFPKKIRFLGIMARNALELYFGYRGEDDKDHYAYKRAKLAG 348
Query: 371 PLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGN 430
L+ LFR F +L D++ +++ K ++Q A+++ +T +K+++ATG W
Sbjct: 349 DLMEDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTW---- 404
Query: 431 AAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAETPE 480
G + GVSQ+L+ +Y +T + ++ P R+LH + WG +CP+ETPE
Sbjct: 405 -VGGKTGVSQLLDRTSYLATNSQL--RRIVSPLSRSQPHFEARELHGTHWGKICPSETPE 461
Query: 481 GQACGLVKNLALMVYITIGSAAYPILEFLEEWG 513
G CGLVKN A+M +T ++E L+ +G
Sbjct: 462 GPNCGLVKNFAIMCKVTREEDDSKVIELLKSFG 494
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 273/529 (51%), Gaps = 48/529 (9%)
Query: 17 TQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDF 76
T E+ W ++ A+ + KGLV+Q LDS++ F +++IV + + S P +
Sbjct: 46 TIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVT----SDVEPWFYLKY 101
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT----KRVIKKGH-DGEEVP 131
+I + P+ T++D A++ RLR+LTY A +YVD+ K+V+++ + +P
Sbjct: 102 LDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMP 161
Query: 132 IMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQP 191
+MLRS+ C L ++ + L ECP D GGYFI+ G+EKV++ QE++S N + V + +P
Sbjct: 162 VMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV--EAEP 219
Query: 192 NKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFR 251
K + A V S + R T + + K S + +IPI+++ +
Sbjct: 220 KKGLWQASVTS--STHERKSKTYVITKNGKLYLKHNS-----------VADDIPIVVVLK 266
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFI------QNQQYIGKR---GATVG 302
A+G +D++I E + + +L PS+EE + Q +YIG R G
Sbjct: 267 AMGLQSDQEIFELVA--GAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAG 324
Query: 303 VTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYG 362
R + A E+L +L H+ + KA Y G + R+L+ + DDRD+ G
Sbjct: 325 ANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVG 384
Query: 363 NKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKTITGGL 417
NKRL+LAG LL LF LF+K D++ + K + D Q + + IT G+
Sbjct: 385 NKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGM 444
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYAS--------TFTYYLSWKLAKPRQLHNSQ 469
+L+TGNW RAGV+ VL+ L+Y S T + + K++ PR L SQ
Sbjct: 445 VRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQ 504
Query: 470 WGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518
+GM+C ++TPEG+ACGLVKNLALM +IT PI++ +G E+
Sbjct: 505 FGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIH 553
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1
SV=2
Length = 1149
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/533 (30%), Positives = 268/533 (50%), Gaps = 55/533 (10%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI--EIRPESQHNP 70
+E T ++ W ++ A+ + KGLV+Q LDSF+ F +++I+ + I ++ PE
Sbjct: 36 DEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPE----- 90
Query: 71 GQQSDFAEIYLSKPMMTESDGETATLFLKA--ARLRNLTYSAPLYVDV-----TKRVIKK 123
F Y+ + +S T RLR++TYSAP+YVD+ ++ K
Sbjct: 91 -----FYLKYVDIRVGKKSSSSTKDYLTPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHK 145
Query: 124 GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHV 183
+ +PIMLRS+ C LY + + +L ECP D GGYFI+NG+EKV++ QE++S N +
Sbjct: 146 DVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 205
Query: 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243
V + ++ + + + + R T + + K S I E
Sbjct: 206 IV----EADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNS-----------IAEE 250
Query: 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEA----FFIQNQ--QYIGKR 297
IPI I+ +A G +D +I++ +C + D+ ++ +LEE+ + Q Q +YIG +
Sbjct: 251 IPIAIVLKACGILSDLEIMQLVCGN--DSSYQDIFAVNLEESSKLDIYTQQQALEYIGAK 308
Query: 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDD 357
T+ + +++ E + ++ H+ +KA Y + R+++ + DD
Sbjct: 309 VKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368
Query: 358 RDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-----DVNLQFAIKAKT 412
RD+ GNKRL+LAG L+ LF LF+K D + + K + D L + +
Sbjct: 369 RDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNN 428
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQ 464
IT GL +++TGNW RAGV+ VL+ L+Y S + S K++ PR
Sbjct: 429 ITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 488
Query: 465 LHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
L SQ+GM+C A+TPEG+ACGLVKNLALM +IT PI + G E+
Sbjct: 489 LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 169/526 (32%), Positives = 272/526 (51%), Gaps = 56/526 (10%)
Query: 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEI 79
E W ++ A+ + KGLV+Q +DSF+ F +++IV + + S +P + ++
Sbjct: 33 EKWKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVT----SGADPLFYLKYLDV 88
Query: 80 YLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV-----TKRVIKKGHDGEEVPIML 134
+ KP + + T RLR+ TYSAP+ VD+ T+R+ + +P+ML
Sbjct: 89 RVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLML 148
Query: 135 RSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 194
R S C L S+ L++L ECP D GGYF++ G EKV++ QE++S N K +
Sbjct: 149 RCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN------KMLTEDF 202
Query: 195 AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG 254
V + C + S + S V LS+ G+Y + + +IPI+++F+ALG
Sbjct: 203 NGVVQ-CQVTSSTHEKKSRTLV--LSK-------HGKY-YLKHNSMTDDIPIVVIFKALG 251
Query: 255 FTADEDILEHICYDFQDTQMMELLRPSLEEAF----FIQNQ--QYIGKR-------GATV 301
+D++I I D ++ SL +A+ F Q + +Y+G + AT
Sbjct: 252 VVSDQEIQSLIGID---SKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATT 308
Query: 302 GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHY 361
E+ A+E+L +L HV +F KA Y ++ R++ L + DDRD+Y
Sbjct: 309 KTPSEE----ARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYY 364
Query: 362 GNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFA--IKAKTITGGLKY 419
GNKRL+LAG LL +F LF+++ ++++ K + K ++A IT GL+
Sbjct: 365 GNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLES 424
Query: 420 SLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQWG 471
++++GNW RAGV+QVL+ L+Y S + + K++ PR L SQWG
Sbjct: 425 AISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWG 484
Query: 472 MMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517
M+CP++TPEG+ACGLVKNLALM +IT P++ G E+
Sbjct: 485 MLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDI 530
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 173/564 (30%), Positives = 286/564 (50%), Gaps = 108/564 (19%)
Query: 24 VISAYFEEKGLVRQQLDSFDEF-----NQNT-MQEIVDESA------------------- 58
++ AYF++ G+V QLDS + F N N+ MQ+IVDE+
Sbjct: 4 IVDAYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVDETKVSDDADPGYFVLDPAKTGG 63
Query: 59 -DIEIR----PESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113
DI I E+ H G+Q+ I++ KP + E+ G + + ARLR+L Y AP+
Sbjct: 64 HDIRIYYGRVRENGHYVGEQT----IFIGKPEIKEASGASNQITPNEARLRDLNYLAPVT 119
Query: 114 VDVTKRVIKKG-HDGEEV------PIMLRSSYCTLYQNS----------------QKALT 150
+ + R+++ G G E+ P+M+RS CTL + + ++ L
Sbjct: 120 LKL--RIVEDGIEKGSEIIKVGDLPVMVRSKICTLSEENLDQYIEKNNGPIGLSRREKLQ 177
Query: 151 ELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRP 210
+GE P D GGYFII GSE+V+++ E ++ N + V ++Y EV + +
Sbjct: 178 YVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMV---EWEDRYESKVEVSKVFSQRG-- 232
Query: 211 PSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDI--------- 261
+ TS + G+ G I+ ++P + +P++IL +ALG D D+
Sbjct: 233 ------GFRALTSMEKGTDGT-INVSIPSVAGTVPLVILMKALGLERDVDVHDAIASVPE 285
Query: 262 LEHICY-DFQDTQMMELLRP----SLEEAFFIQNQQYIGKRGATVGVTREKMIKYAKEIL 316
+E I Y + +D++ ++L P + E+A Y+ KR A G +E K ++L
Sbjct: 286 MEPIIYSNIEDSKNPKVLPPNGVNTTEDAI-----SYLEKRFAA-GQAKEFRDKKISQML 339
Query: 317 QKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGL 376
+LPH+G +KA Y G + LL +LG R EDD+DH NKR+ LAG L+ L
Sbjct: 340 DHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDEL 399
Query: 377 FRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRA 436
FR+ F+ + D++ ++K + + + ++ A++ +T + ++++TGNW G R
Sbjct: 400 FRSAFQSVMKDLKYQLEKTYNRKRGIKIRPAVRQDLLTQRVLHAMSTGNW-----IGGRT 454
Query: 437 GVSQVLNCLTYASTFTYYLSWKLAKP----------RQLHNSQWGMMCPAETPEGQACGL 486
GVSQ+L+ ++ ST ++ ++ P R LH +QWG +CP ETPEGQ CGL
Sbjct: 455 GVSQLLDRVSNLSTISHL--RRIISPLTRTQPHFEARDLHPTQWGRICPNETPEGQNCGL 512
Query: 487 VKNLALMVYITIGSAAYPILEFLE 510
VKN AL++ +T G ++E L+
Sbjct: 513 VKNAALLINVTQGIDPDSVMEILK 536
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/495 (30%), Positives = 257/495 (51%), Gaps = 54/495 (10%)
Query: 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAE 78
EE W ++ A+ + +GLV+Q +DSF+ F M++IV + R ++++P F +
Sbjct: 37 EEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANE----RLTAENDPSYFVRFTD 92
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV----TKRVIKKG--HDGEEVPI 132
I + P TE + ++ L + RLR++TYSAP++V++ K++I K H G +PI
Sbjct: 93 INVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGN-IPI 151
Query: 133 MLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN 192
MLRSS C L + + + + LGECP D GGYFI+ G EKV++ E++S N + +
Sbjct: 152 MLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIII------- 204
Query: 193 KYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGS-SGQYIHATLPYIRTEIPIIILFR 251
+S+ P +++ R S G + + ++ +IP+ I+ +
Sbjct: 205 ----------EMDSKGLPSASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLK 254
Query: 252 ALGFTADEDILEHICYDFQDTQMMELLRPSLEEA------FFIQNQQYIGKRGATV---- 301
+G D+++ + + D + + PSLEE Q Y+G R
Sbjct: 255 GMGVETDQEMAQLVG---SDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPY 311
Query: 302 GVTREKM-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDH 360
GV +K + A++IL +L HV + K Y +I R+++ + + DD+D+
Sbjct: 312 GVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDY 371
Query: 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV---DNGKDVNLQFAIKAKTITGGL 417
YGNKR++L+G L+ LF F+K +++ V + + + ++++L I+ TIT G
Sbjct: 372 YGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGF 431
Query: 418 KYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF--------TYYLSWKLAKPRQLHNSQ 469
+++++G W R+GVSQVL+ L+Y S + + K+A PR L SQ
Sbjct: 432 THAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQ 491
Query: 470 WGMMCPAETPEGQAC 484
WGM+CP++TPEG+AC
Sbjct: 492 WGMLCPSDTPEGEAC 506
>sp|P0CX04|RPOB2_HALSA DNA-directed RNA polymerase subunit B'' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB2 PE=3
SV=1
Length = 523
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 254/505 (50%), Gaps = 57/505 (11%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
QE+ + +YF ++ L S++ F ++ MQ++V E IE + G + D
Sbjct: 3 QEDKRELSESYFSKERLAEHHFRSYNAFLEHGMQDVVTEKERIET------DIGDKEDEE 56
Query: 76 -----FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-----KRVIKKGH 125
++ P + E+DG L+ + ARLRN+TYSAP++++++ + ++
Sbjct: 57 PVWVELGDVRAVTPRVREADGSEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEERVL 116
Query: 126 DGEE-----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
D E +PIM+ S C + S + L E+GE P D GGYFIINGSE+VL+ E ++
Sbjct: 117 DTTETKVGRMPIMVGSDKCNISGFSDEELIEIGEDPADPGGYFIINGSERVLMTSEDLAP 176
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYI 240
N + +KY +V SQ R + + +R + + P +
Sbjct: 177 NKILA---EYDSKYGDEIQVAKTF-SQRRGYRALVLVERNREG--------LLEVSFPSV 224
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGAT 300
I + L RALG +DE+I+ + +D ++++ + +LEEA ++ I G
Sbjct: 225 SGSISFVTLVRALGLESDEEIVHRVS---EDPEIVKFMLENLEEADVQTQEEAIEDLGQR 281
Query: 301 V--GVTREKMIKYAKEILQKEMLPHVGTGDFCETK----KAYYFGHIIHRLLLCALGRRA 354
V G + +K A ++ + +LPH+ E + KAYY + ALGRR
Sbjct: 282 VASGQGKNYQLKRANYVIDRYLLPHLHEDGVEEEETRINKAYYLCRMAEACFELALGRRE 341
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DD+DHY NKRL ++G L+ LFRT KL DV+ +++ +++ + +++ +T
Sbjct: 342 ADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQLERANMRNRELTVNTVVRSDVLT 401
Query: 415 GGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAKP------RQLH 466
L++ +ATGNW G R+GVSQ+++ + ++ L L++ R LH
Sbjct: 402 ERLEHPIATGNW-----VGGRSGVSQLVDRTDFMGVLSHLRRLRSPLSRSQPHFEARDLH 456
Query: 467 NSQWGMMCPAETPEGQACGLVKNLA 491
+QWG +CP+ETPEG CGLVKN A
Sbjct: 457 ATQWGRICPSETPEGPNCGLVKNFA 481
>sp|B0R8D6|RPOB2_HALS3 DNA-directed RNA polymerase subunit B'' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB2 PE=1 SV=1
Length = 523
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 254/505 (50%), Gaps = 57/505 (11%)
Query: 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-- 75
QE+ + +YF ++ L S++ F ++ MQ++V E IE + G + D
Sbjct: 3 QEDKRELSESYFSKERLAEHHFRSYNAFLEHGMQDVVTEKERIET------DIGDKEDEE 56
Query: 76 -----FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT-----KRVIKKGH 125
++ P + E+DG L+ + ARLRN+TYSAP++++++ + ++
Sbjct: 57 PVWVELGDVRAVTPRVREADGSEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEERVL 116
Query: 126 DGEE-----VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMST 180
D E +PIM+ S C + S + L E+GE P D GGYFIINGSE+VL+ E ++
Sbjct: 117 DTTETKVGRMPIMVGSDKCNISGFSDEELIEIGEDPADPGGYFIINGSERVLMTSEDLAP 176
Query: 181 NHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYI 240
N + +KY +V SQ R + + +R + + P +
Sbjct: 177 NKILA---EYDSKYGDEIQVAKTF-SQRRGYRALVLVERNREG--------LLEVSFPSV 224
Query: 241 RTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGAT 300
I + L RALG +DE+I+ + +D ++++ + +LEEA ++ I G
Sbjct: 225 SGSISFVTLVRALGLESDEEIVHRVS---EDPEIVKFMLENLEEADVQTQEEAIEDLGQR 281
Query: 301 V--GVTREKMIKYAKEILQKEMLPHVGTGDFCETK----KAYYFGHIIHRLLLCALGRRA 354
V G + +K A ++ + +LPH+ E + KAYY + ALGRR
Sbjct: 282 VASGQGKNYQLKRANYVIDRYLLPHLHEDGVEEEETRINKAYYLCRMAEACFELALGRRE 341
Query: 355 EDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTIT 414
DD+DHY NKRL ++G L+ LFRT KL DV+ +++ +++ + +++ +T
Sbjct: 342 ADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQLERANMRNRELTVNTVVRSDVLT 401
Query: 415 GGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYY--LSWKLAKP------RQLH 466
L++ +ATGNW G R+GVSQ+++ + ++ L L++ R LH
Sbjct: 402 ERLEHPIATGNW-----VGGRSGVSQLVDRTDFMGVLSHLRRLRSPLSRSQPHFEARDLH 456
Query: 467 NSQWGMMCPAETPEGQACGLVKNLA 491
+QWG +CP+ETPEG CGLVKN A
Sbjct: 457 ATQWGRICPSETPEGPNCGLVKNFA 481
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 179/564 (31%), Positives = 282/564 (50%), Gaps = 79/564 (14%)
Query: 3 MEEERLE-EDEEEETTQEEAWAVISAYFEE--KGLVRQQLDSFDEFNQNTMQEIVDESAD 59
M ++ +E ED QE +A++ +FE+ + LV+ +DSF++F + + I+ + D
Sbjct: 1 MSKKSVEIEDVNNTYDQEAHFALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNIL-QGGD 59
Query: 60 IEIRPESQHNP--GQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVT 117
I ++ N + F ++ + P + + E L+ A + ++YSA VT
Sbjct: 60 NVISEKATENKIIRYRLTFNDLGIKPPTL---ENEENLLYPLDAIRKQISYSAKYTATVT 116
Query: 118 K--------------RVI---KKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
+ R+I +K ++PIM+ S YC L A C YD G
Sbjct: 117 QWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVLSKYCNLTLRPDIAGKH---CKYDAG 173
Query: 161 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLS 220
GYFI+NGSEKV+++ E M VF +R N Y V S+ SQ +F +
Sbjct: 174 GYFIVNGSEKVVLSVESMIPRKPVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMK 233
Query: 221 RTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLR- 279
R ++ I ++P+ + E+ I RALG DEDI++ I ++ ++ LL
Sbjct: 234 RDNS--------IILSIPHFK-EVSIFTFIRALGIETDEDIVDSILDVKKEKDLLNLLSI 284
Query: 280 -------PSL--EEAFFIQNQQYIGKRGATVG---VTREKMIKYAKEILQKEMLPHV--G 325
PS+ EEA I Q + T V E+ +Y +I+ + +LPH+ G
Sbjct: 285 CMNSSNTPSVTKEEALEIMANQIKSTKTFTDTNPEVKAEQRRRYLDKIMTQFVLPHITSG 344
Query: 326 TGD--FCETKKAYYFGHIIHRLLLCAL--GRRAE-----DDRDHYGNKRLDLAGPLLGGL 376
TGD + KA+Y ++IH+LL C L R E DDRD NKR+DL G LLGGL
Sbjct: 345 TGDPEIDKIYKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGL 404
Query: 377 FRTLFRKLTGDV-RSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTR 435
F+ + K+ D + + K +D+ K N+ IK +I GL+ +L+TGN+G + +R
Sbjct: 405 FKQFYDKMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQGLRQALSTGNFG----SQSR 460
Query: 436 AGVSQVLNCLTYASTFTYYL----------SWKLAKPRQLHNSQWGMMCPAETPEGQA-C 484
G+SQ+LN + + + +Y + K+ PR LHN+Q+G MCP E+PEG+
Sbjct: 461 KGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKT 520
Query: 485 GLVKNLALMVYITIG-SAAYPILE 507
GLVKN+A+M ITI ++ PI+E
Sbjct: 521 GLVKNMAMMEGITINMNSQIPIIE 544
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3
SV=1
Length = 1193
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 159/573 (27%), Positives = 266/573 (46%), Gaps = 93/573 (16%)
Query: 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPE----SQHN 69
+E ++E ++ YF+ GLV+ QL++FD F + ++ I+D+ A I + SQ
Sbjct: 18 KEVSEENRLMLLKDYFQTSGLVKHQLETFDHFIFHDIKTIIDDEASIIFNGKRSLSSQIK 77
Query: 70 PGQQSD-------------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDV 116
G + F ++++KP +T D L+ AR + +TY + ++VDV
Sbjct: 78 NGAVEEGYNRKESEKIMLKFENVFVAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDV 137
Query: 117 TKRVIKKGHDGEEV-------------PIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163
+ V++ D EE+ PIMLRSS C LY + + ELGE D GGYF
Sbjct: 138 LEYVLR---DEEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYF 194
Query: 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFV------- 216
IING+E+VLI Q + + N F+ NK++ C M ++ +
Sbjct: 195 IINGNERVLIGQLRNAYNRSICFR----NKFSE-PLTCDMRSMSEETGHSVLIQLRLNDS 249
Query: 217 PMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ--DTQM 274
P+ + + K I + +T IPI +FR L A D L+ + D + D +
Sbjct: 250 PISQKRNLKKLDKNGTIDLIISQTKTPIPISFVFRVLK-VATIDKLKFLIGDEEELDKYL 308
Query: 275 MELLRPSLEEAFF----IQNQQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330
++++ + + F I+ Q T +K I + ++++M PH+G
Sbjct: 309 IKIVEETSDGGIFDDMEIEISQEDDFNEENEESTEKKKI---TQFIEQDMFPHLGVSSTH 365
Query: 331 ETKKAYYFGHIIHRLLLC--------ALGRRAED----------------DRDHYGNKRL 366
E +KA G ++ +LLL +RA D DRD+Y NKR+
Sbjct: 366 E-EKAILLGKMVRKLLLVNETSINANKFAQRANDETNKTNKTNKMYYTQEDRDNYSNKRV 424
Query: 367 DLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNW 426
+ AG L LFR L+++ ++S + + ++ V + K IT GL +S +TGNW
Sbjct: 425 ETAGVLCFELFRMLYKRF---IKSNINQ-LEKRNRVEMDVISKNAFITTGLHFSFSTGNW 480
Query: 427 GQGNAAGTRAGVSQV-LNCLTYASTFTYYLSW--------KLAKPRQLHNSQWGMMCPAE 477
G R GV+Q+ N +++ + F+Y + K K RQ+H S CP+E
Sbjct: 481 GVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIHPSSIFFACPSE 540
Query: 478 TPEGQACGLVKNLALMVYITIGSAAYPILEFLE 510
TPEGQ G+ N +++ ++I +++ I E +E
Sbjct: 541 TPEGQFVGITLNFSMLAEVSIRTSSVVIKEIIE 573
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/524 (26%), Positives = 236/524 (45%), Gaps = 68/524 (12%)
Query: 26 SAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSD-------FAE 78
+++F++ GL+ QL+S++ F ++ +Q + ++ + P + +D F E
Sbjct: 40 TSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKKDNDWRYATVKFGE 99
Query: 79 IYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK----------GHDG- 127
+ + KP D E L A RL+N+TYSA + V+V V K G D
Sbjct: 100 VTVEKPTFFSDDKELEFLPWHA-RLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNY 158
Query: 128 ---------------EEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172
+P+M++S C + ++ + G+C +D+GGYF+I G+EKV
Sbjct: 159 VEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENCKK-GDCAFDQGGYFVIKGAEKVF 217
Query: 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQY 232
IAQE+M T +++ P ++ +E +NR F+ LS +
Sbjct: 218 IAQEQMCTKRLWI--SNSPWTVSFRSE-----NKRNR-----FIVRLSENEKAEDYKRRE 265
Query: 233 IHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ 292
T+ ++ TEIP+ +LF ALG ++D++ ++ I +D D + L S+ A +
Sbjct: 266 KVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAF 325
Query: 293 YIGKRGATVGVTREKMIKY-----AKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347
G T + K K+ E L + P + + KKA + G+++ LL
Sbjct: 326 RCGNNALTYVEQQIKSTKFPPAESVDECLHLYLFPGLQS----LKKKARFLGYMVKCLLN 381
Query: 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN-LQF 406
G+R ++RD + NKR++LAG LL R + +QK + D+ ++
Sbjct: 382 SYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDLKPIEH 441
Query: 407 AIKAKTITGGLKYSLATGNWGQ---------GNAAGT-RAGVSQVLNCLTYASTFTYYLS 456
+ A IT GL + +TG W G A RA Q L L Y +
Sbjct: 442 YLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLY-T 500
Query: 457 WKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
K+ R H S WG +C TP+G+ CGLVKN++L+ ++ S
Sbjct: 501 GKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQS 544
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 134/512 (26%), Positives = 227/512 (44%), Gaps = 60/512 (11%)
Query: 26 SAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPM 85
+++FEE GL+ QL+S++ F ++ +Q + + DI + P + D+ + K +
Sbjct: 31 TSFFEEFGLISHQLNSYNFFIEHGLQNVFESFGDILVEPSFDVIKKKDGDWRYATVFKKI 90
Query: 86 MTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNS 145
+ + D + Y +DV K+ I G +P+M++S C +
Sbjct: 91 VIKHD---------KFKTGQDEYVEKEILDVKKQDILIG----SIPVMVKSVLCKTSEKG 137
Query: 146 QKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAE 205
++ + G C +D+GGYF+I G+EKV IAQE+M T +++ P ++ +E
Sbjct: 138 KENCKK-GNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI--SNSPWTVSFRSET----- 189
Query: 206 SQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHI 265
+NR F+ LS T+ ++ TEIP+ +LF ALG ++D++ ++ I
Sbjct: 190 KRNR-----FIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLI 244
Query: 266 CYDFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVG 325
+D D + L S+ EA + G T Y + ++ P
Sbjct: 245 AFDGDDASITNSLIASIHEADAVCEAFRCGNNALT----------YVEHQIKSTKFPPAE 294
Query: 326 TGDFC-----------ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 374
+ D C KKA + G+++ LL G+R ++RD + NKR++LAG LL
Sbjct: 295 SVDDCLRLYLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLE 354
Query: 375 GLFRTLFRKLTGDVRSYVQKCVDNGKDVN-LQFAIKAKTITGGLKYSLATGNWGQ----- 428
R + +QK + D+ ++ + A IT GL + +TG W
Sbjct: 355 REIRVHLAHARRKMTRAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKM 414
Query: 429 ----GNAAGT-RAGVSQVLNCLTYASTFTYYLSWKLAKPRQLHNSQWGMMCPAETPEGQA 483
G A RA Q L L Y + K+ R H S WG +C TP+G+
Sbjct: 415 ERVSGVVANLGRANPLQTLIDLRRTRQQVLY-TGKVGDARHPHPSHWGRVCFLSTPDGEN 473
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
CGLVKN++L+ ++ ++E L G E
Sbjct: 474 CGLVKNMSLLGLVST-QGLESVVEMLFTCGME 504
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3
SV=1
Length = 1140
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 139/572 (24%), Positives = 245/572 (42%), Gaps = 96/572 (16%)
Query: 13 EEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ 72
++ + + +++ YF+ GLV+ Q+++F+ F ++ I++ + I+ + ++
Sbjct: 11 DKHLSSDNRAKIVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHDNYS--- 67
Query: 73 QSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRV-IKKGHDGE--- 128
F IY+ P + + D L+ + AR ++L+Y+ + V+V + V K+G +
Sbjct: 68 -LKFTNIYVEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISE 126
Query: 129 -------EVPIMLRSSYCTLYQNSQKALTEL-GECPYDEGGYFIINGSEKVLIAQEKMST 180
++PIML S C L + + ++ G D+GGYFIING E+VLI+Q + +
Sbjct: 127 QYRVPIAKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAY 186
Query: 181 NHVYVFKKRQPNKY-AYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPY 239
N F K K + E+ SM E TS + I +L
Sbjct: 187 NKPVCFVKSTSQKEDVLICEMRSMCEE-----------TFHSTSVQVKMIKNKIMVSLKL 235
Query: 240 IR--TEIPIIILFRALGFTADE------------------------DILEHICY------ 267
R +IP+ I+F+ LG+ D+ D LE Y
Sbjct: 236 KRKLIDIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDAIKNDCLEEFAYGIAVSA 295
Query: 268 ---DFQDTQMMELLRPSLEE-----AFFIQNQQYIGKRG--ATVGVTREKMIKYAKEILQ 317
D D+ ++ F + K G A G+T E + K L
Sbjct: 296 ADGDNSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAATGITIEDVQKS----LD 351
Query: 318 KEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377
++ PH+G ++ ++ + LL + D+RD Y +KR++ AG L LF
Sbjct: 352 MDLFPHLGITS-TRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLF 410
Query: 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAG 437
R L++K + ++ + ++ ++ IT G+ YS ++G WG R G
Sbjct: 411 RLLYKKFQKTCITQIR-----NRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTG 465
Query: 438 VSQVLNCLTYASTFTYYLSW--------------KLAKPRQLHNSQWGMMCPAETPEGQA 483
VSQV+N S Y S K ++ RQ+H S ++CP ETPEG+
Sbjct: 466 VSQVVN--PKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKG 523
Query: 484 CGLVKNLALMVYITIGSAAYPILEFLEEWGTE 515
G V N+A+ +T G + I++ ++ +G +
Sbjct: 524 VGTVLNMAVFCQVTTGISTCEIMDQIDSFGVD 555
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 138/581 (23%), Positives = 239/581 (41%), Gaps = 108/581 (18%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+E EE T+ + + ISA GL+ + SFD+ N + +IV + +++I + Q
Sbjct: 13 IEAVNNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQ 72
Query: 68 HNPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFLKAARLRNLTYSAPLYVDV 116
+ + Q +F ++ + +P S G L ARL L+YS P V++
Sbjct: 73 RDHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNL 130
Query: 117 TKRVIKKGH--DGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
VI H +G + PIM S+ C Y S+ A E+GE P + G
Sbjct: 131 AAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTYHLSKTAKKEIGEDPNEPG 190
Query: 161 GYFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GYFI G E V L+ + +T H++ +Q N E S S I +
Sbjct: 191 GYFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRY 250
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ-----DTQ 273
++ G+ I++T + + IP ++FR G T D+ I+E + +D + +T
Sbjct: 251 MTT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTF 304
Query: 274 MMELLRPSLEEAFFI-QNQQYIGKRGATVGVTREKMIKYAKE------------------ 314
M+E+L S+ + I Q Q+ R + EK+ K+
Sbjct: 305 MIEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQ 364
Query: 315 --ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G
Sbjct: 365 LTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVS 424
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK-------------------AKTI 413
L F+ +F S + ++ K++ Q A + A +
Sbjct: 425 LAKAFKAIFNT------SVIAPIINGFKELLKQTAFEDLTQRNIIEAFSAALSKNSASDL 478
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQV----------LNCLTYASTFTYYLSWKLAKP- 462
++ S+ +GN + R V++V LN ++ T + + +K
Sbjct: 479 NRSMEQSIISGN--KTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQT 536
Query: 463 ------RQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI 496
R++H S G +C A++ + G+ G+ K LA+ +
Sbjct: 537 ERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANV 577
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3
SV=1
Length = 1242
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 137/582 (23%), Positives = 240/582 (41%), Gaps = 110/582 (18%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+E + EE T+ + + ISA GL+ + SFD+ N + +IV + +++I + Q
Sbjct: 13 IETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQ 72
Query: 68 HNPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFLKAARLRNLTYSAPLYVDV 116
+ + Q +F ++ + +P S G L ARL L+YS P V++
Sbjct: 73 RDHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNL 130
Query: 117 TKRVIKKGH--DGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
VI H +G + PIM S+ C + S+ A E+GE P + G
Sbjct: 131 AAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPG 190
Query: 161 GYFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GYFI G E V L+ + +T H++ +Q N E S S I +
Sbjct: 191 GYFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRY 250
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ-----DTQ 273
++ G+ I++T + + IP ++FR G T D+ I+E + +D + +T
Sbjct: 251 MTT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTF 304
Query: 274 MMELLRPSLE--EAFFIQNQQYIGKRGATVGVTREKMIKYAKE----------------- 314
M+E+L S+ + F Q Q+ R + EK+ K+
Sbjct: 305 MIEILEKSIHVLDPIF-QPVQHEPNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNER 363
Query: 315 ---ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G
Sbjct: 364 QLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGV 423
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK-------------------AKT 412
L F+ +F S + ++ K++ Q A + A
Sbjct: 424 SLAKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASD 477
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQV----------LNCLTYASTFTYYLSWKLAKP 462
+ ++ S+ +GN + R V++V LN ++ T + + +K
Sbjct: 478 LNRSMEQSIISGN--KTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQ 535
Query: 463 -------RQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI 496
R++H S G +C A++ + G+ G+ K LA+ +
Sbjct: 536 TERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANV 577
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 137/581 (23%), Positives = 239/581 (41%), Gaps = 108/581 (18%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+E + EE T+ + + ISA GL+ + SFD+ N + +IV + +++I + Q
Sbjct: 13 IETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQ 72
Query: 68 HNPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFLKAARLRNLTYSAPLYVDV 116
+ + Q +F ++ + +P S G L ARL L+YS P V +
Sbjct: 73 RDHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLSGLSYSGP--VKL 130
Query: 117 TKRVIKKGH--DGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
VI H +G + PIM S+ C + S+ A E+GE P + G
Sbjct: 131 AAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHDLSKTAKKEIGEDPNEPG 190
Query: 161 GYFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GYFI G E V L+ + +T H++ +Q N E S S I +
Sbjct: 191 GYFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRY 250
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ-----DTQ 273
++ G+ I++T + + IP ++FR G T D+ I+E + +D + +T
Sbjct: 251 MTT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTF 304
Query: 274 MMELLRPSLEEAFFI-QNQQYIGKRGATVGVTREKMIKYAKE------------------ 314
M+E+L S+ + I Q Q+ R + EK+ K+
Sbjct: 305 MIEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQ 364
Query: 315 --ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPL 372
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G
Sbjct: 365 LTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVS 424
Query: 373 LGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK-------------------AKTI 413
L F+ +F S + ++ K++ Q A + A +
Sbjct: 425 LAKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDL 478
Query: 414 TGGLKYSLATGNWGQGNAAGTRAGVSQV----------LNCLTYASTFTYYLSWKLAKP- 462
++ S+ +GN + R V++V LN ++ T + + +K
Sbjct: 479 NRSMEQSIISGN--KTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQT 536
Query: 463 ------RQLHNSQWGMMCPAETPE-GQACGLVKNLALMVYI 496
R++H S G +C A++ + G+ G+ K LA+ +
Sbjct: 537 ERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANV 577
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Frog virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 131/521 (25%), Positives = 211/521 (40%), Gaps = 91/521 (17%)
Query: 24 VISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSK 83
V SA VR ++SFD+ N +V + ++ G + F +
Sbjct: 87 VSSANMHPSNFVRHHIESFDDMLWNEFPAMVAREKPVSVK-------GYRVKFGTVRYEP 139
Query: 84 PMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE-------EVPIMLRS 136
P E T + AR + TY + D+T KG + ++P+M+ S
Sbjct: 140 PCPDGKPWEKLTPAM--ARRTDATYHSAAVCDLTV-TDPKGLETVYPRLELCKIPVMVGS 196
Query: 137 SYC-TLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYA 195
+ C T + S GECP D GGYFII G E+V++ + + + V+K N
Sbjct: 197 AVCWTRTEGSPLP----GECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYK----NGDG 248
Query: 196 YVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255
++ E S+ + T+ V ++T + + + +LPYI+ +P+ ++F+ALG
Sbjct: 249 WLCEFRSVNRETRQ---TVLV--QAKTDCR-----RKLEFSLPYIKQYVPVGLVFKALGK 298
Query: 256 TADEDIL----------EHICYDFQDTQMMELL---------RPSLEEAFFIQNQQYI-- 294
TA E + E C M LL P + A + + + +
Sbjct: 299 TAREAVAMCGLGSFLGDEVSCRTVHHQSMAALLMEQHASAPEDPVADLAKHVPDGRSVYS 358
Query: 295 --------GKRGATVGVTREKMIK-----YAKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
K V ++ K Y + +L E+ H G A + G +
Sbjct: 359 KQAEGAKQAKYADRASVEEDRNAKGSKEDYVRHVLAGEIFLHGGDA-------AEHLGWM 411
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
+ R+ A G DRD NKR+D GPL+ L L ++ V+ +V+
Sbjct: 412 VKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLLKQY---VKLFVKSAGCQKNL 468
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWGQ---GNAAGTRAGVSQVLNCLTYASTFTYY---- 454
+ +T L ATGNW G + R GVSQVL+ Y + ++
Sbjct: 469 CPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSYVRVGVSQVLSNNNYGARVSHLRRIM 528
Query: 455 ----LSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
K + RQLH+S +G +CP ETPEG+ G+V N+A
Sbjct: 529 HAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNMA 569
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 137/578 (23%), Positives = 239/578 (41%), Gaps = 110/578 (19%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+E + EE T+ + + ISA GL+ + SFD+ N + +IV + +++I + Q
Sbjct: 13 IETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQ 72
Query: 68 HNPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFLKAARLRNLTYSAPLYVDV 116
+ + Q +F ++ + +P S G L ARL L+YS P V++
Sbjct: 73 RDHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNL 130
Query: 117 TKRVIKKGH--DGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
VI H +G + PIM S+ C + S+ A E+GE P + G
Sbjct: 131 AAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPG 190
Query: 161 GYFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GYFI G E V L+ + +T H++ +Q N E S S I +
Sbjct: 191 GYFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRY 250
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ-----DTQ 273
++ G+ I++T + + IP ++FR G T D+ I+E + +D + +T
Sbjct: 251 MTT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTF 304
Query: 274 MMELLRPSLE--EAFFIQNQQYIGKRGATVGVTREKMIKYAKE----------------- 314
M+E+L S+ + F Q Q+ R + EK+ K+
Sbjct: 305 MIEILEKSIHVLDPIF-QPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNER 363
Query: 315 ---ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G
Sbjct: 364 QLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGV 423
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK-------------------AKT 412
L F+ +F S + ++ K++ Q A + A
Sbjct: 424 SLAKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASD 477
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQV----------LNCLTYASTFTYYLSWKLAKP 462
+ ++ S+ +GN + R V++V LN ++ T + + +K
Sbjct: 478 LNRSMEQSIISGN--KTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQ 535
Query: 463 -------RQLHNSQWGMMCPAETPE-GQACGLVKNLAL 492
R++H S G +C A++ + G+ G+ K LA+
Sbjct: 536 TERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAI 573
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 137/578 (23%), Positives = 239/578 (41%), Gaps = 110/578 (19%)
Query: 8 LEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQ 67
+E + EE T+ + + ISA GL+ + SFD+ N + +IV + +++I + Q
Sbjct: 13 IETVDNEELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQ 72
Query: 68 HNPGQ----------QSDFAEIYLSKPMMTE-SDGETATLFLKAARLRNLTYSAPLYVDV 116
+ + Q +F ++ + +P S G L ARL L+YS P V++
Sbjct: 73 RDHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNL 130
Query: 117 TKRVIKKGH--DGEE--------------VPIMLRSSYCTLYQNSQKALTELGECPYDEG 160
VI H +G + PIM S+ C + S+ A E+GE P + G
Sbjct: 131 AAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPG 190
Query: 161 GYFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GYFI G E V L+ + +T H++ +Q N E S S I +
Sbjct: 191 GYFIARGGEWVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRY 250
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQ-----DTQ 273
++ G+ I++T + + IP ++FR G T D+ I+E + +D + +T
Sbjct: 251 MTT-----GAITIEINST-KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTF 304
Query: 274 MMELLRPSLE--EAFFIQNQQYIGKRGATVGVTREKMIKYAKE----------------- 314
M+E+L S+ + F Q Q+ R + EK+ K+
Sbjct: 305 MIEILEKSIHVLDPIF-QPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNER 363
Query: 315 ---ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGP 371
IL K +LPH+G +K + G +IH++LL + DRD Y KR+ +G
Sbjct: 364 QLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGV 423
Query: 372 LLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIK-------------------AKT 412
L F+ +F S + ++ K++ Q A + A
Sbjct: 424 SLAKAFKAIFNT------SVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASD 477
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQV----------LNCLTYASTFTYYLSWKLAKP 462
+ ++ S+ +GN + R V++V LN ++ T + + +K
Sbjct: 478 LNRSMEQSIISGN--KTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQ 535
Query: 463 -------RQLHNSQWGMMCPAETPE-GQACGLVKNLAL 492
R++H S G +C A++ + G+ G+ K LA+
Sbjct: 536 TERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAI 573
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 131/534 (24%), Positives = 218/534 (40%), Gaps = 76/534 (14%)
Query: 30 EEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQ-QSDFAEIYLSKPMMTE 88
E K L++ +DSFD F + + ++ +S + +HN Q + F ++ LS+P
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYF----EHNSTQYKIRFTDLKLSRPTRNI 59
Query: 89 SDGETATLFLKAARLRNLTYSAPLYVDV---TKRVIKKGHDGEEV--------------- 130
+ E L+ +R TY+AP + + + DG EV
Sbjct: 60 VEKEIK-LYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDL 118
Query: 131 ---PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNH-VYVF 186
PIM++S YC L S + L E E ++GGYFI+NG+EKV+ NH V +
Sbjct: 119 GRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALH 178
Query: 187 KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGG----SSGQYIHATLPYIRT 242
+K N+ + TI R+S + GQ L Y R
Sbjct: 179 RKAWTNR----------GPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFL-YRRQ 227
Query: 243 E--IPIIILFRALGFTADEDILEHICY-DFQDTQMMELLRPSLEEAFF--IQNQQ----Y 293
E +P +L +AL T +++I E+I D ++T + + + SL E I Q+ Y
Sbjct: 228 EFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDY 287
Query: 294 IGKR--GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALG 351
IG R T IK + + + + H+ + K +I +L G
Sbjct: 288 IGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYN----DKYNLLILMIQKLYAMVGG 343
Query: 352 RRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK-------DVNL 404
+ D+ D + + LAG + G + + + +S+V K ++ K D
Sbjct: 344 KCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALK 403
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAG-----VSQVLNCLTYASTF------TY 453
+ K I Y LATGN + + ++ LN L + S F +
Sbjct: 404 KVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAF 463
Query: 454 YLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILE 507
+ + K R+L WG CP TP+G CGL+ +L+ +T+ +A P ++
Sbjct: 464 FATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ 517
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPA2 PE=3 SV=2
Length = 1196
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 118/469 (25%), Positives = 204/469 (43%), Gaps = 77/469 (16%)
Query: 77 AEIYLSKPMMTESDGETA----TLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE--- 129
++ L+KPM +DG TA +F AR R TY L + + V +DGEE
Sbjct: 94 TQVSLTKPM--SNDGVTAAAERNVFPAEARKRLTTYRGKLLLKLNWSV----NDGEETFS 147
Query: 130 -------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV---LIAQEKMS 179
+P+ML+S+ C L++ S + L E E + GGYFI+NG EK+ LI Q +
Sbjct: 148 EVRDCGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVNGIEKLIRMLIVQRR-- 205
Query: 180 TNHVYV-----FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234
NH F R + Y ++ + RP T S+T+ + +
Sbjct: 206 -NHPMAIIRPSFANRGTSYSHYGVQIRCV-----RPDQT------SQTNVLHYLNDGQVT 253
Query: 235 ATLPYIRTE--IPIIILFRALGFTADEDILEHIC-YDFQD---TQMMELLRPSLEEAF-- 286
+ + E +P++++ +AL +D +I + I D + T +ELL ++ F
Sbjct: 254 FRFSWRKNEYLVPVVLILKALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFKKRFPQ 313
Query: 287 ---FIQNQQYIGKRGATVGVTREKMIKY--AKEILQKEMLPHVGTGDFCETKKAYYFGHI 341
Q QY+G + V M Y +E+L++ +L H+G + T K+ +
Sbjct: 314 LLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDEN---TDKSNMLMFM 370
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
I +L G D+ D ++ + L G L G + + + +++ +Q V+ G
Sbjct: 371 IRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADVNRGMP 430
Query: 402 VNLQ---FAIKAKT-----ITGGLKYSLATGNWGQGNAAGTR-----AGVSQVLNCLTYA 448
V+ + + + T I L+Y L+TGN + + V++ +N +
Sbjct: 431 VDFKDRKYMTRVLTRINENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFI 490
Query: 449 STF------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
S F +++ K R+L WG +CP TP+G CGL+ + A
Sbjct: 491 SHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFA 539
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 113/450 (25%), Positives = 189/450 (42%), Gaps = 67/450 (14%)
Query: 96 LFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE---------EVPIMLRSSYCTLYQNSQ 146
+F R R+++Y L R+ +DGE ++PIM++S+ C L NS
Sbjct: 116 IFPAECRERHVSYRGKLSATFEYRI----NDGEPHEFVRELGQMPIMVKSNKCHLQNNSP 171
Query: 147 KALTELGECPYDEGGYFIINGSEKV----LIAQEKMSTNHVY-VFKKRQPNKYAYVAEVC 201
L E + GGYFI+NG EK+ L+ + V F+ R + Y +
Sbjct: 172 AQLVARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMR 231
Query: 202 SMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDI 261
S+ RP T +L S G + ++ Y+ IP++++ +AL T D +I
Sbjct: 232 SV-----RPDETSQTNVLHYLS-DGNVTFRFSWRKNEYL---IPVMMIMKALVETNDREI 282
Query: 262 LEH---------ICYDFQDTQMMELLRPSLEEAFF--IQNQQYIGKRGATVGVTREKMIK 310
E + F ++ LLR + + Q + Y+G++ V + M
Sbjct: 283 FEGLVGPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSD 342
Query: 311 Y--AKEILQKEMLPHVGTGDFCETKKAYYFGHII---HRLLLCALGRRAEDDRDHYGNKR 365
Y E L+K +L H+G+ D E + A F ++ +L G A D+ D N+
Sbjct: 343 YEVGTEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQE 402
Query: 366 LDLAGPLLGGLFRTLFRKL-TGDVRSYVQKCVDNGKDVNLQ------------FAIKAKT 412
+ L G L G + + +L T R+ ++ + V+ Q F +
Sbjct: 403 ILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTFLKDFPIAIFRRANEN 462
Query: 413 ITGGLKYSLATGNWGQGNAAGTR-----AGVSQVLNCLTYASTF------TYYLSWKLAK 461
I L+Y L+TGN + + V++ LN L + S F +++ K
Sbjct: 463 IGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTT 522
Query: 462 PRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
R+L WG +CP TP+G CGL+ +LA
Sbjct: 523 VRKLLPESWGFLCPVHTPDGSPCGLLNHLA 552
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 108/468 (23%), Positives = 206/468 (44%), Gaps = 76/468 (16%)
Query: 78 EIYLSKPMMTESDGETATLFLKA----ARLRNLTYSAPLYVDVTKRVIKKGHDGEE---- 129
++ ++KPM +DG ++ + K +R R +Y L + + V ++GEE
Sbjct: 101 QVSIAKPM--SNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSV----NNGEENLFE 154
Query: 130 ------VPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV---LIAQEKMST 180
+P+ML+S+ C L + S L + E + GGYFI+NG EK+ LI Q +
Sbjct: 155 VRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRR--- 211
Query: 181 NHVYV-----FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHA 235
NH F R + Y ++ S+ RP T S+T+ + +
Sbjct: 212 NHPMAIIRPSFANRGASYSHYGIQIRSV-----RPDQT------SQTNVLHYLNDGQVTF 260
Query: 236 TLPYIRTE--IPIIILFRALGFTADEDILEHIC-YDFQD---TQMMELLRPSLEEAF-FI 288
+ + E +P++++ +AL T+D +I + I D +D T +ELL ++ + +
Sbjct: 261 RFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHL 320
Query: 289 QNQ----QYIGKRGATV--GVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHII 342
QN+ QY+G + V + ++ +E+L + +L H+G + + F +I
Sbjct: 321 QNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLF--MI 378
Query: 343 HRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402
+L G + D+ D ++ + L G L G + + + ++ + V+ ++ G +
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAI 438
Query: 403 NLQ--------FAIKAKTITGGLKYSLATGNWGQGNAAGTR-----AGVSQVLNCLTYAS 449
N + + I ++Y L+TGN + + V++ +N + S
Sbjct: 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFIS 498
Query: 450 TF------TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
F +++ K R+L WG +CP TP+G CGL+ + A
Sbjct: 499 HFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFA 546
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes
octocarinatus GN=RPA2 PE=3 SV=2
Length = 1166
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 129/517 (24%), Positives = 214/517 (41%), Gaps = 65/517 (12%)
Query: 32 KGLVRQQLDSFDEFNQNTMQEIVDESADIE-IRPESQHNPGQQSD---FAEIYLSKPMMT 87
K + R +DSFD + + + I PE + G + + L +P +
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 88 ESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDG-----EEVPIMLRSSYCTLY 142
E D ++ L+ R R +TY+ PL+ + K+ + D ++P M R +C L
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLK 136
Query: 143 QNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKK-----RQPNKYAYV 197
++K L + GE + GGYFI+NG+EKV+ N FK+ R + Y
Sbjct: 137 GLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDYG 196
Query: 198 AEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTA 257
++ + + + TI + LS G S + I+ ++ IPII++ +AL
Sbjct: 197 VQMRCVRD--DFTAQTITLTYLS----DGSVSLRLIYQKQEFL---IPIILILKALKNCT 247
Query: 258 DEDILEHICY-DFQDTQMMELLRPSLEEAFFI------QNQQYIGKRGATV--GVTREKM 308
D I E I +F Q+ + + L + Q++ IG R V G+T E
Sbjct: 248 DRQIYERIVKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETS 307
Query: 309 -IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRL--LLCALGRRAE-DDRDHYGNK 364
I L K + H D E K F +I + L ++ E D+ D +
Sbjct: 308 DIDAGDLFLSKHICIHT---DSYEAK----FDTLILMIDKLYASVANEVELDNLDSVAMQ 360
Query: 365 RLDLAGPL-LGGLFRTLFRKLTGDVRSYVQKCVD--NGKDVNLQFAIKAKTITGG----- 416
+ L G L L L LF L ++R+ + K + N + + + + I G
Sbjct: 361 DVLLGGHLYLQILSEKLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIG 420
Query: 417 --LKYSLATGNW-GQGNAAGTRAG----VSQVLNCLTYASTF------TYYLSWKLAKPR 463
++ LATGN + N + + LN + + S F Y+ K R
Sbjct: 421 KRMENFLATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVR 480
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500
+L WG +CP TP+G CGL+ +++ M + IGS
Sbjct: 481 KLLPESWGFICPVHTPDGAPCGLLNHIS-MSCVPIGS 516
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila
melanogaster GN=RpI135 PE=2 SV=2
Length = 1129
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 113/500 (22%), Positives = 211/500 (42%), Gaps = 55/500 (11%)
Query: 38 QLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS---DFAEIYLSKPMMTES--DGE 92
+DSFDE + +D SA I P +P + I+++KP + + D
Sbjct: 39 HVDSFDEM----LTVGLDNSAKHMI-PNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVR 93
Query: 93 TATLFLKAARLRNLTYSAPLYVDVTKRV--IKK---GHDGEEVPIMLRSSYCTLYQNSQK 147
T ++ +R +++YS V + V ++K D EVPIMLRS C L Q + +
Sbjct: 94 TREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPE 153
Query: 148 ALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ-PNKYAYVAEVCSMAES 206
+ + GE + GG F+I G+EK++ NH K+ ++ +++ + ++
Sbjct: 154 EMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQT 213
Query: 207 QNRPPSTI--FVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEH 264
S++ V L+ +AK ++ + + + + +P+ ++ + L DE+I
Sbjct: 214 VREDESSLSNVVHYLNNGTAK------FMFSHVKRL-SYVPVCLILKCLMDYTDEEIYNR 266
Query: 265 ICYDFQDTQ-----MMELLRPSLEEAFFIQNQ--QYIGK--RGATVGVTREKMIKYAKE- 314
+ ++ Q + +LR E + Q +IG R V + +
Sbjct: 267 LVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDF 326
Query: 315 ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 374
IL++ ++ H+ T + K +I +L CA G+ ++ D + + L G L
Sbjct: 327 ILRERVMIHLDTYE----DKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQ 382
Query: 375 GLFRTLFRKLTGDVRSYVQKCVDN-----GKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
VR +QK + + V Q +A + ++ LATGN
Sbjct: 383 KYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASR 442
Query: 430 NAAGTRAG-----VSQVLNCLTYASTF------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
G +++ +N + Y S F +Y+ + + + RQL WG +CP T
Sbjct: 443 TGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHT 502
Query: 479 PEGQACGLVKNLALMVYITI 498
P+G CGL+ +L L I++
Sbjct: 503 PDGTPCGLLNHLTLTCEISM 522
>sp|Q3A9Q7|RPOB_CARHZ DNA-directed RNA polymerase subunit beta OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpoB PE=3
SV=1
Length = 1132
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 123/515 (23%), Positives = 207/515 (40%), Gaps = 106/515 (20%)
Query: 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIY 80
++A E L+ Q S+ F ++E+ E I P + +F + Y
Sbjct: 13 SYAKFPEILELPYLIEIQKKSYQWFLDEGLREVFRE-----ISPITDFTGNLSLEFLDYY 67
Query: 81 LSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCT 140
L KP + ++ + R+ TYSAPL V V R++ K GE
Sbjct: 68 LGKPKYS----------VEECKERDFTYSAPLRVKV--RLLNK-ETGE------------ 102
Query: 141 LYQNSQKALTELGECPY-DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPN-KYAYVA 198
Q+ LG+ P E G FI NG+E+V+I+Q + + VY ++ PN K Y+A
Sbjct: 103 --IKEQEVF--LGDFPLMTEKGTFIFNGAERVVISQ-MVRSPGVYFSEQVDPNGKKMYLA 157
Query: 199 EVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG---- 254
+ NR F ++ +I+ + R ++P+ +L +ALG
Sbjct: 158 TIIP-----NRGAWLEFETDVN----------DHIYVRIDRTR-KLPVTVLLKALGYESK 201
Query: 255 ------FTADEDILEHICYDFQDTQ---MMELLR-------PSLEEAFFIQNQQYIGKRG 298
F D+ I+ + D D++ ++E+ + P++E A + + + +
Sbjct: 202 GRIAELFDHDDKIIATLERDNTDSREEALIEIYKKLRPGEPPTVESAKTLLDSMFFDPKR 261
Query: 299 ATVG-VTREKMIK---------YAKEILQKEMLPHVGTGDFCETKKAYY-------FGHI 341
+G V R K+ K Y +E +KE ++ D+ K+ + +
Sbjct: 262 YDLGNVGRYKLFKKLNHGVLYRYLEEDGEKEYDKYLN--DYVPVKREFIRELTNEDIIYT 319
Query: 342 IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401
I LL G+ DD DH GN+RL G LL FR ++ VR + + +
Sbjct: 320 IRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVRE--RMTIQDADS 377
Query: 402 VNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAK 461
+ Q I + I +K + Q + L LT+ + L++
Sbjct: 378 LTPQVLINTRPIVAAIKEFFGSSQLSQFMDQ------TNPLAELTHKRRLSALGPGGLSR 431
Query: 462 P------RQLHNSQWGMMCPAETPEGQACGLVKNL 490
R +H+S +G MCP ETPEG GL+ NL
Sbjct: 432 ERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNL 466
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 108/463 (23%), Positives = 183/463 (39%), Gaps = 70/463 (15%)
Query: 78 EIYLSKPMMT--ESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEE-----V 130
E+ ++KPM++ E ++ AR R TY + L + + V E +
Sbjct: 81 EVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMI 140
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYV----- 185
PIM+RS+ C L S L E + GGYFI+NG EK++ NH
Sbjct: 141 PIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPS 200
Query: 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE-- 243
F R + Y + + Q+ +T+ Y++ + R
Sbjct: 201 FANRGTSYSQYGLSIRCVRPDQSSLTNTL----------------HYLNNGVTMFRFHWR 244
Query: 244 -----IPIIILFRALGFTADEDILEHIC-YDFQDTQMME----LLRPSLEEAFFIQNQ-- 291
IP +++ +AL T+D++I E I D +T + + +LR + Q +
Sbjct: 245 KNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETL 304
Query: 292 QYIGKRGATVGVTREKM--IKYAKEILQKEMLPHVGTGDFCETKKAY-YFGHIIHRLLLC 348
QY+G + V E + ++ + +LQK +L H+ E K + +I +L
Sbjct: 305 QYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLR-----EAKDKFRLLLFMIRKLYAL 359
Query: 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCV---------DNG 399
G D+ D ++ + L G L G + + +R+ + V +
Sbjct: 360 VAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDR 419
Query: 400 KDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAG-----VSQVLNCLTYASTF--- 451
K + F+ I L+Y L+TGN + V++ LN + S F
Sbjct: 420 KYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMV 479
Query: 452 ---TYYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 491
++ K R+L WG MCP TP+G CGL+ +LA
Sbjct: 480 HRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLA 522
>sp|Q2RFN9|RPOB_MOOTA DNA-directed RNA polymerase subunit beta OS=Moorella thermoacetica
(strain ATCC 39073) GN=rpoB PE=3 SV=1
Length = 1141
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 125/519 (24%), Positives = 194/519 (37%), Gaps = 112/519 (21%)
Query: 20 EAW--AVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFA 77
E W A I E L+ Q +S+ F ++E+ + I P F
Sbjct: 11 ERWTFAKIKETLELPNLIEIQRNSYQWFIDTGLRELFHD-----ISPIQDFTGNLILQFV 65
Query: 78 EIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSS 137
+ L +P +E + + R++TY+APL V V R+I + GE
Sbjct: 66 DYSLGEPKYSEDE----------CKERDMTYAAPLRVKV--RLINR-ETGE--------- 103
Query: 138 YCTLYQNSQKALTELGECPY-DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAY 196
Q+ +G+ P + G FIING+E+V+++Q S Y Y
Sbjct: 104 -----VKEQEVF--MGDFPLMTDKGTFIINGAERVIVSQLVRSPGAYYAEGIDASGTKVY 156
Query: 197 VAEVC----SMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252
A V + E + +I+V + RT +IP+ IL RA
Sbjct: 157 GATVIPNRGAWLEFETDNTESIYV-RIDRTR-------------------KIPVTILLRA 196
Query: 253 LGFTADEDILEHICYD--FQDT--------------QMMELLRPS-----------LEEA 285
LG+ + ILE YD Q+T ++ + LRP LE
Sbjct: 197 LGYNTNARILELFDYDGRIQNTLEKDNTESEEEALVEIYKRLRPGEPPTVDSARNLLESL 256
Query: 286 FFIQNQQYIGKRGATVGVTREKM-IKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHR 344
FF + +G G R K+ K+ IL +E+ G ++ T + I
Sbjct: 257 FFDPRRYDLGNVG------RYKLHKKFNHGILTREV---DGREEYIRTLTKEDIIYTIKY 307
Query: 345 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNL 404
LL G DD DH GN+RL G LL FR ++ VR + + + +
Sbjct: 308 LLRLMDGEVKPDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVRE--RMTIQDVDVITP 365
Query: 405 QFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP-- 462
Q I + + +K + Q + L LT+ + L++
Sbjct: 366 QVLINIRPVVAAIKEFFGSSQLSQ------FMDQTNPLAELTHKRRLSALGPGGLSRERA 419
Query: 463 ----RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
R +H S +G MCP ETPEG GL+ +L+ I
Sbjct: 420 GFEVRDVHTSHYGRMCPIETPEGPNIGLIGSLSTYARIN 458
>sp|A5D5I2|RPOB_PELTS DNA-directed RNA polymerase subunit beta OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=rpoB PE=3 SV=1
Length = 1224
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 176/451 (39%), Gaps = 114/451 (25%)
Query: 104 RNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGY 162
R++TY+APL V V R+I K GE ++ +G+ P E G
Sbjct: 82 RDVTYAAPLRVKV--RLINK-ETGE----------------VKEQDVFMGDFPLMTEKGT 122
Query: 163 FIINGSEKVLIAQEKMSTNHVYVFKKRQPN-KYAYVAEVC----SMAESQNRPPSTIFVP 217
FIING+E+V+++Q + + VY + P+ K Y A + + E + IFV
Sbjct: 123 FIINGAERVIVSQ-LVRSPGVYFDETIDPSGKKLYTATIIPNRGAWLEFETDVNDHIFV- 180
Query: 218 MLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALG----------FTADEDILEHICY 267
+ RT +IP +L RALG F D++ILE +
Sbjct: 181 RIDRTR-------------------KIPATVLVRALGYGTKAQVAELFNEDKNILETLAR 221
Query: 268 DFQDTQ---MMEL---LRP----------SLEEAFFIQNQQY----IGKRGATVGVTREK 307
D D++ ++E+ LRP SL + F ++Y +G+ +
Sbjct: 222 DNTDSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGV 281
Query: 308 MIKYA--------------KEILQK-EMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGR 352
+ +Y KE+ QK E + + D ET I LL G
Sbjct: 282 LYRYGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIET---------IRYLLKLMNGE 332
Query: 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKT 412
DD DH GN+RL G LL FR ++ VR + + + + Q I +
Sbjct: 333 GQVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRE--RMTIQDVDVITPQVLINIRP 390
Query: 413 ITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKP------RQLH 466
+ +K + Q + L LT+ + L++ R +H
Sbjct: 391 VVAAIKEFFGSSQLSQ------FMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVH 444
Query: 467 NSQWGMMCPAETPEGQACGLVKNLALMVYIT 497
+S +G MCP ETPEG GL+ +L+ I
Sbjct: 445 HSHYGRMCPIETPEGPNIGLIGSLSTYARIN 475
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus
GN=Polr1b PE=2 SV=2
Length = 1135
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/451 (24%), Positives = 175/451 (38%), Gaps = 65/451 (14%)
Query: 101 ARLRNLTYSAPLYVDVTKRV--IKKGHDGE---EVPIMLRSSYCTLYQNSQKALTELGEC 155
R R TY L D++ V + KG + VPIM++S C LY + L E E
Sbjct: 103 CRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEE 162
Query: 156 PYDEGGYFIINGSEKV--LIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPST 213
+ GGYFIING EKV ++ + + V K + Y SM + +
Sbjct: 163 AEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSA- 221
Query: 214 IFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQ 273
V M G +I+ R E+ F LGF + F D Q
Sbjct: 222 --VNMNLHYVENGTVMLNFIY------RKEL----FFLPLGFALKALV------SFSDYQ 263
Query: 274 MM-ELLRPSLEEAFFIQNQQYIGKRGATVGVTREK-MIKYAKEILQKEM-----LPHVGT 326
+ EL++ E++FF + + + G +K ++ Y E + ++ P+V
Sbjct: 264 IFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVKLSLPDWYPNVEA 323
Query: 327 GDF-----------CETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGG 375
+F T K Y + +L A G +D+ D N+ + G L
Sbjct: 324 AEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLM 383
Query: 376 LFRTLFR------KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQG 429
+ K+ D R+ N +++ F++ + +T +Y LATGN
Sbjct: 384 FLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTE-LTRPFEYLLATGNLRSK 442
Query: 430 NAAG--TRAGVSQV---LNCLTYASTF------TYYLSWKLAKPRQLHNSQWGMMCPAET 478
G +G+ V LN L Y S F + + R+L WG +CP T
Sbjct: 443 TGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHT 502
Query: 479 PEGQACGLVKNLALMVYIT---IGSAAYPIL 506
P+G CGL+ +L + + + +A+ P L
Sbjct: 503 PDGAPCGLLNHLTAVCEVVTKFVYTASIPAL 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,517,439
Number of Sequences: 539616
Number of extensions: 8397709
Number of successful extensions: 32982
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 29234
Number of HSP's gapped (non-prelim): 2799
length of query: 518
length of database: 191,569,459
effective HSP length: 122
effective length of query: 396
effective length of database: 125,736,307
effective search space: 49791577572
effective search space used: 49791577572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)