Query 046830
Match_columns 518
No_of_seqs 122 out of 1261
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09606 DNA-directed RNA poly 100.0 6E-111 1E-115 905.5 44.2 474 18-517 2-492 (494)
2 KOG0214 RNA polymerase II, sec 100.0 9E-113 2E-117 911.2 29.6 496 18-518 2-524 (1141)
3 PRK08565 DNA-directed RNA poly 100.0 4E-104 9E-109 914.5 43.0 471 21-517 1-489 (1103)
4 KOG0216 RNA polymerase I, seco 100.0 4.9E-92 1.1E-96 746.5 28.1 477 21-517 5-528 (1111)
5 COG0085 RpoB DNA-directed RNA 100.0 9.4E-89 2E-93 757.5 28.4 441 16-517 9-477 (1060)
6 CHL00001 rpoB RNA polymerase b 100.0 4.5E-82 9.8E-87 719.6 31.9 410 29-509 10-458 (1070)
7 TIGR02013 rpoB DNA-directed RN 100.0 7.9E-82 1.7E-86 720.9 31.9 407 19-498 5-459 (1065)
8 PRK00405 rpoB DNA-directed RNA 100.0 8E-81 1.7E-85 716.1 32.6 411 19-498 12-504 (1112)
9 cd00653 RNA_pol_B_RPB2 RNA pol 100.0 1.4E-79 3E-84 698.1 33.3 366 34-497 1-381 (866)
10 CHL00207 rpoB RNA polymerase b 100.0 2E-74 4.4E-79 653.8 31.7 398 27-498 3-438 (1077)
11 KOG0215 RNA polymerase III, se 100.0 3.2E-73 7E-78 600.9 21.5 481 14-517 39-544 (1153)
12 PRK14844 bifunctional DNA-dire 100.0 2.8E-69 6.1E-74 631.9 29.2 435 14-499 11-605 (2836)
13 PRK09603 bifunctional DNA-dire 100.0 9.3E-69 2E-73 629.7 32.8 428 18-498 11-597 (2890)
14 PF04563 RNA_pol_Rpb2_1: RNA p 100.0 1.5E-45 3.2E-50 354.9 15.7 143 33-178 1-149 (203)
15 PF04565 RNA_pol_Rpb2_3: RNA p 99.9 5.4E-27 1.2E-31 185.4 2.4 58 440-497 1-68 (68)
16 PF04561 RNA_pol_Rpb2_2: RNA p 99.8 2.5E-20 5.5E-25 176.7 7.9 170 181-367 3-190 (190)
17 KOG0215 RNA polymerase III, se 97.4 6.6E-06 1.4E-10 90.2 -5.2 415 20-500 99-550 (1153)
18 PF14251 DUF4346: Domain of un 70.3 2.9 6.4E-05 36.4 1.9 17 150-166 7-23 (119)
No 1
>PRK09606 DNA-directed RNA polymerase subunit B''; Validated
Probab=100.00 E-value=6.1e-111 Score=905.45 Aligned_cols=474 Identities=39% Similarity=0.642 Sum_probs=413.1
Q ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCCcccccC
Q 046830 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLF 97 (518)
Q Consensus 18 ~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~~~~~l~ 97 (518)
+++.|.++++||+.++|++|||+|||+|+++||++++++.+||++.. .....++|.++++++|.+.+.++...+++
T Consensus 2 ~~~~~~~i~~~~~~~~lv~~qi~SFn~Fi~~gl~~ii~~~~~i~~~~----~~~~~l~~~~~~l~~P~~~~~~~~~~~l~ 77 (494)
T PRK09606 2 MEDRRVLSDAYFKEHRLVRHHIDSYNDFVDNGLQKIIDEQGPIETEI----EDGVYVELGKIRVGKPVVKEADGSEREIY 77 (494)
T ss_pred chHHHHHHHHHHCCCChHHHHHHHHHHHHHHhHHHHHHhcCCEEEec----CCcEEEEEEEEEECCCcccccCCccccCC
Confidence 35789999999999999999999999999999999999999998642 23457889999999999887766678999
Q ss_pred HHHHHhcCCCcceeEEEEEEEEEeec-----CcccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEEeCceeEE
Q 046830 98 LKAARLRNLTYSAPLYVDVTKRVIKK-----GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVL 172 (518)
Q Consensus 98 P~ecR~r~~TYs~~l~v~v~~~~~~~-----~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFIING~ErVi 172 (518)
|+|||++++||+|+++|++.+...+. ....|+|||||+|++|||++++++|++..||||.|+||||||||+||||
T Consensus 78 P~eaR~r~~TYs~~l~v~i~~~~~~~~~~~~~v~iG~iPiMv~S~~C~L~~~~~~~l~~~~E~~~d~GGyFIING~ErVi 157 (494)
T PRK09606 78 PMEARLRNLTYSAPLYLEMSPVEGGEEEEPEEVYIGELPVMVGSKICNLYGLSEEELIEVGEDPLDPGGYFIVNGSERVL 157 (494)
T ss_pred HHHHHhcCCCccceEEEEEEEEECCCceEEeeEEeccCCeEeccCcccCCCCCHHHHHhcCCCcCCCCCeEEECCCeEEE
Confidence 99999999999999999999864321 1345789999999999999999999999999999999999999999999
Q ss_pred EEeeecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHh
Q 046830 173 IAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRA 252 (518)
Q Consensus 173 i~q~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrA 252 (518)
++|++++||+|++++++..+...|.++++|.+++| .....+++.. ++.+++++++.+.+||+++||||
T Consensus 158 ~~q~~~~~n~~~~~~~~~~~~~~~~~~i~s~~~~~---~~~~~l~~~~---------~g~i~~~~~~~~~~iPi~~llkA 225 (494)
T PRK09606 158 MTLEDLAPNKILVEKDERYGDRIEVAKVFSQRRGY---RALVTVERNR---------DGLLEVSFPSVPGSIPFVILMRA 225 (494)
T ss_pred EEEEeccCCeeEEEeccCCCccceEEEEEcccccc---eeeEEEEEec---------CCeEEEEEcCccccccHHHHHHH
Confidence 99999999999998765444446899999999876 2334577764 47799999976679999999999
Q ss_pred cCCCCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhcccccc----eeeecCccccccchhhHHHHHHHHHhccCCCCCCCC
Q 046830 253 LGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGD 328 (518)
Q Consensus 253 Lg~~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~~~~~----~ig~~~~~~~~~~~~~~~~~~~il~~~~l~hl~~~~ 328 (518)
||.+||+||++.+.. +..+.+++..++++.. ..+++ |||++++... .+....+.++++|++++|||+|.+.
T Consensus 226 Lg~~sd~eI~~~i~~---~~~~~~~l~~~~~~~~-~~t~~~al~~ig~~~~~~~-~~~~~~~~~~~~l~~~~l~hig~~~ 300 (494)
T PRK09606 226 LGLETDEEIVEAVSD---DPEIVKFMLENLEEAE-VDTQEEALEYIGKRVAPGQ-TKEYRIKRAEYVIDRYLLPHLGVEP 300 (494)
T ss_pred cCCCCHHHHHHHhCC---cHHHHHHHHHHHHhcc-cCCHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHhhhcccCCCc
Confidence 999999999999943 3445555555665542 33443 9999987633 3455668899999999999999765
Q ss_pred cchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhh
Q 046830 329 FCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAI 408 (518)
Q Consensus 329 ~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i 408 (518)
.+..+|+++|++|++||+.++.|.+.+||+|||+||||+++|+||+.+||.+|+++++.++..+.+...+++.+++..++
T Consensus 301 ~~~~~K~~~L~~m~~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~fr~~l~~~~~~~k~~l~~~~~~~~~~~~~~~~ 380 (494)
T PRK09606 301 EVRRAKAHYLGRMAEACFELALGRREEDDKDHYANKRLKLAGDLMEDLFRVAFNRLARDVKYQLERANMRNRELSIKTAV 380 (494)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCCCCcccccCceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHhc
Confidence 45568999999999999999999999999999999999999999999999999999999998887765555567888899
Q ss_pred hhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc--------CCCCCCccccCCCCcccccccCCCC
Q 046830 409 KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPE 480 (518)
Q Consensus 409 ~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R--------~gk~t~vR~lhps~~G~iCPveTPE 480 (518)
+++.||++|++|||||||+++ ++|+||+|||+||+|+|||+| .++.++||+||||||||+|||||||
T Consensus 381 ~~~~It~~l~~~~~TGnw~~~-----~~glSq~ldr~N~la~lSh~Rrv~s~~~r~~~~~~vR~lhps~~G~iCPveTPE 455 (494)
T PRK09606 381 RSDVLTERLEHAMATGNWVGG-----RTGVSQLLDRTDYMATLSHLRRVVSPLSRSQPHFEARDLHPTQWGRICPSETPE 455 (494)
T ss_pred CchhhhHHHHHHhhcccccCC-----CceEEEEccCCCHHHHhhHHHhccCCccccCccccccccCcccceecccCcCCC
Confidence 988999999999999999975 589999999999999999999 2356799999999999999999999
Q ss_pred CccccccccccceEEEecCCChhhHHHHHHHcCCccc
Q 046830 481 GQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517 (518)
Q Consensus 481 G~~cGLi~~La~~a~is~~~~~~~i~~~l~~~g~~~~ 517 (518)
|+|||||+|||++|+|+++.+.+.|.++|.++||+++
T Consensus 456 G~~cGLv~~La~~a~V~~~~~~~~i~~~l~~lg~~~~ 492 (494)
T PRK09606 456 GPNCGLVKNFAQMVEISTGEDEEEVKEILKELGVEPE 492 (494)
T ss_pred CCcccHHHhhhceEEEeCCCChHHHHHHHHHCcCeeC
Confidence 9999999999999999999888889999999999986
No 2
>KOG0214 consensus RNA polymerase II, second largest subunit [Transcription]
Probab=100.00 E-value=9.2e-113 Score=911.24 Aligned_cols=496 Identities=67% Similarity=1.055 Sum_probs=461.3
Q ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCC----CCceEEEEEEEEecCcccCCCCcc
Q 046830 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN----PGQQSDFAEIYLSKPMMTESDGET 93 (518)
Q Consensus 18 ~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~----~~~~i~f~~~~i~~P~~~~~~~~~ 93 (518)
+++.|.+|++||+.++|+++|++||+.|++.++++++++.++|+......+. ..+++.|+.+++.+|...|.||..
T Consensus 2 qe~~w~vis~~f~ekglvrqQldsFdeFiq~~~qeiv~~~p~i~l~~~~qh~~~~~~r~~l~f~qiylskP~~~e~dg~~ 81 (1141)
T KOG0214|consen 2 QEDCWDVISAYFEEKGLVRQQLDSFDEFIQQTLQEIVADSPKIELQDEAQHTQENPARYQLFFEQIYLSKPTHTESDGST 81 (1141)
T ss_pred hhHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhcCCCceehhhhhhhccCccceEEEeeeEEEecccccccCCCc
Confidence 6789999999999999999999999999999999999999999875444322 246789999999999999999999
Q ss_pred cccCHHHHHhcCCCcceeEEEEEEEEEeecC----------cccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceE
Q 046830 94 ATLFLKAARLRNLTYSAPLYVDVTKRVIKKG----------HDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYF 163 (518)
Q Consensus 94 ~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~----------~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYF 163 (518)
..++|+|||+|++|||+||||++...+.... .-.|+||||+||.+|.|++++++++..+||||+|+||||
T Consensus 82 ~~m~p~eARlrnLTYSspLyVd~~k~~~~~~~~~~~~~~qkvfIGkIPiMlrS~~C~l~~~~d~dl~~l~eCp~DqgGyf 161 (1141)
T KOG0214|consen 82 STMFPNEARLRNLTYSSPLYVDATKIVKTSRDEVEDMQEQKVFIGKIPIMLRSSYCLLSGLTDKDLTELGECPYDQGGYF 161 (1141)
T ss_pred cccCchhhHhhhcccccceEEEeEEEEeeccccccccccceeeEeccceeeehhhhhhcccchhhhhhccCCCcCCCceE
Confidence 9999999999999999999999998765432 123689999999999999999999999999999999999
Q ss_pred EEeCceeEEEEeeecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEecccccc
Q 046830 164 IINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243 (518)
Q Consensus 164 IING~ErVii~q~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 243 (518)
||||+|||+|+||++|+|++|+++++.++...|+++|||.-+..++..+++++.+..... .+-.+.++++|+|++
T Consensus 162 IINGseKVlIAQe~matn~vyvf~k~~p~~~ay~~EirS~le~~sR~~stl~v~~~ar~~-----~gq~i~~tlpyikqe 236 (1141)
T KOG0214|consen 162 IINGSEKVLIAQEKMATNIVYVFKKAHPGTYAYTGEIRSCLERSSRFISTLSVNMDARAG-----KGQEIIATLPYIKQE 236 (1141)
T ss_pred EEcCceeeeeehhhccCceEEEEecCCCCceeEeeeeehhhhccCCCcceeeeeeccccC-----CCceEEEEeeeeccc
Confidence 999999999999999999999999999899999999999887766778888888875311 245889999999999
Q ss_pred chhhhHHHhcCCCCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhcccccc----eeeecCccccccchhhHHHHHHHHHhc
Q 046830 244 IPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKE 319 (518)
Q Consensus 244 IPl~illrALg~~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~~~~~----~ig~~~~~~~~~~~~~~~~~~~il~~~ 319 (518)
||+++|+||||+.+|+||++.|+|+++|.++.++++++++|++-++.++ |+|++...++..+++.+++|+++|.++
T Consensus 237 IPI~ilfrALG~v~dreILehIcYd~~D~em~e~lkpsieeafviq~qn~ALdfig~rga~~Gvtkekri~yakdiLqKe 316 (1141)
T KOG0214|consen 237 IPILILFRALGFVSDREILEHICYDFDDAEMFESLKPSIEEAFVIQEQNVALDFIGQRGACIGVTKEKRIKYAKEILQKE 316 (1141)
T ss_pred CcEEEEehhhcCCccHHHHHhhcCCCCcHHHHHHhhhhhhhhhhhhhhHHHHHHHHhcCCCCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887776 999999888888899999999999999
Q ss_pred cCCCCCCCCcchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 046830 320 MLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG 399 (518)
Q Consensus 320 ~l~hl~~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~ 399 (518)
+|||++..+...++|++||+|||++|+.++.|++.+||+||++|||++++|+||..+||..|+++.+++...+++.++++
T Consensus 317 ~lPhi~~~e~~etkKA~fLGYmi~rlll~aLgRr~~ddRDHfG~KRLDlaGpLLa~lfR~lf~~l~rd~~~~mQk~le~~ 396 (1141)
T KOG0214|consen 317 LLPHVGLGEICETKKAYFLGYMVHRLLLAALGRRELDDRDHFGNKRLDLAGPLLAKLFRSLFAKLLRDVTRYMQKCLENG 396 (1141)
T ss_pred hccccccchhhhhhHHHHHHhhHHHHHHHHcCCCCccchhhccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHhhhhcchhHHHHHHhccCCCCCCCCCC-ccccceeeccccCccccccccc--------CCCCCCccccCCCCc
Q 046830 400 KDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAG-TRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQW 470 (518)
Q Consensus 400 ~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~-~~sG~sq~ldr~N~l~~lSh~R--------~gk~t~vR~lhps~~ 470 (518)
+.+++...++++.||++++|++|||||+.....+ .++||||+|+|+||+++|||+| +||+..+|+||||||
T Consensus 397 ~dfni~~aika~iIt~gl~yslaTgnwgdq~ka~~~ragVsQVLnR~t~~sTLsHlRR~n~Pigr~GKlAkpRqlHnthw 476 (1141)
T KOG0214|consen 397 VDFNIELAIKAKIITNGLNYALATGNWGDQKKAMQGRAGVSQVLNRLNPLSTLSHLRRTNSPIGRTGKLAKPRQLHNSHW 476 (1141)
T ss_pred ccceEEEEEEeeeecccceeeeccCCccchhHHhhccccHHHHhccccHHHHHHHHhhcCCccccccccCCccccCcccc
Confidence 9999999999999999999999999999766555 5999999999999999999999 789999999999999
Q ss_pred ccccccCCCCCccccccccccceEEEecCCChhhHHHHHHHcCCcccC
Q 046830 471 GMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518 (518)
Q Consensus 471 G~iCPveTPEG~~cGLi~~La~~a~is~~~~~~~i~~~l~~~g~~~~~ 518 (518)
|++||+|||||++||||+|||++|.||+++...+|.++|.++||++++
T Consensus 477 GmvCPaeTPEGqacGLVKNLSLmayIsvGS~~sPi~EfLeewgmE~le 524 (1141)
T KOG0214|consen 477 GMVCPAETPEGQACGLVKNLSLMAYISVGSLESPIVEFLEEWGMENLE 524 (1141)
T ss_pred eeeccccCCCcceeeccccceEEEEEecCCCccHHHHHHHHhchhhHh
Confidence 999999999999999999999999999999999999999999999763
No 3
>PRK08565 DNA-directed RNA polymerase subunit B; Provisional
Probab=100.00 E-value=4.3e-104 Score=914.50 Aligned_cols=471 Identities=41% Similarity=0.655 Sum_probs=416.1
Q ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCCcccccCHHH
Q 046830 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKA 100 (518)
Q Consensus 21 ~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~~~~~l~P~e 100 (518)
.|.++++||+..+|++|||+|||+|+++||++++++++||+.. ++++.++|.+++|++|.+.+.++...+|+|+|
T Consensus 1 ~~~li~~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~pI~~~-----~~~~~L~f~~i~l~~P~~~~~~~~~~~l~P~e 75 (1103)
T PRK08565 1 RWTVVEAYFKEKGLVRQHLDSYNDFIERGLQEIVDEFGEIKTE-----IPGLKIVLGKIRVGEPEIKEADGSERPITPME 75 (1103)
T ss_pred CchHHHHHhcccChHHHHHHHHHHHHHHhHHHHHHhcCCEEec-----CCCEEEEEEEEEECCCcccccccccCCCCHHH
Confidence 4999999999999999999999999999999999999999863 45688999999999999987776778899999
Q ss_pred HHhcCCCcceeEEEEEEEEEeec-----CcccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEEeCceeEEEEe
Q 046830 101 ARLRNLTYSAPLYVDVTKRVIKK-----GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQ 175 (518)
Q Consensus 101 cR~r~~TYs~~l~v~v~~~~~~~-----~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFIING~ErVii~q 175 (518)
||+|++||+|+|+|++.+..... ....|+|||||+|++|||++++++|++..||||+|+||||||||+||||++|
T Consensus 76 cR~r~lTYsa~l~v~i~~~~~~~~~~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~~E~p~D~GGYFIING~ERVI~~q 155 (1103)
T PRK08565 76 ARLRNLTYAAPLYLTMIPVENGIEYEPEEVKIGDLPIMVKSKICPLSGLSPDELIEIGEDPKDPGGYFIINGSERVIVSQ 155 (1103)
T ss_pred HHhcCCCcceEEEEEEEEEECCeeeEEEEEEeccCCeEeCCCcccCCCCCHHHHHhcCCCccCCCCeEEECCcEEEEEEE
Confidence 99999999999999999864321 2345789999999999999999999999999999999999999999999999
Q ss_pred eecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHhcCC
Q 046830 176 EKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGF 255 (518)
Q Consensus 176 ~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrALg~ 255 (518)
++++||+++++....+.+..|.|+++|.++.+ ...+.+++.. ++.++++++++..+||+++||||||.
T Consensus 156 ~~~s~n~~~~~~~~~~~~~~~~a~i~s~~~~~---~~~~~l~~~~---------~g~i~~~~~~~~~~IPi~illkALG~ 223 (1103)
T PRK08565 156 EDLAPNRVLVDKGEAGSSITHTAKVISSRAGY---RAQVTVERRK---------DGTIYVSFPAVPGKIPFVILMRALGL 223 (1103)
T ss_pred EecCCCEEEEEEecCCCcceEEEEEEeccCCC---cceEEEEEec---------CCeEEEEEcCcccEeeHHHHHHHcCC
Confidence 99999999987655445556899999998865 2445677764 47899999976679999999999999
Q ss_pred CCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhcc-cccc----eeeecCccccccchhhHHHHHHHHHhccCCCCCCCCcc
Q 046830 256 TADEDILEHICYDFQDTQMMELLRPSLEEAFFI-QNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFC 330 (518)
Q Consensus 256 ~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~-~~~~----~ig~~~~~~~~~~~~~~~~~~~il~~~~l~hl~~~~~~ 330 (518)
.||+||++.+.. +..+.+.+..+++++... .+++ |||+++++. ..+..+.+.++++|++++|||+|....+
T Consensus 224 ~sD~eI~~~i~~---~~~~~~~l~~~l~~~~~~~~t~~~al~~ig~~~~~~-~~~~~~~e~~~~~L~~~ll~Hig~~~~~ 299 (1103)
T PRK08565 224 ETDRDIVYAVSL---DPEIQQELLPSLEQASSIAATVEDALDYIGKRVAIG-QPREYRIERAEQILDKYLLPHLGTSPED 299 (1103)
T ss_pred CCHHHHHHHhcc---cHHHHHHHHHHHHHhhccccCHHHHHHHHHHhccCC-CCCccHHHHHHHHHHhhCcccCCCcccc
Confidence 999999999864 455556666777766433 4443 999998763 2345567889999999999999976544
Q ss_pred hhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhh
Q 046830 331 ETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKA 410 (518)
Q Consensus 331 ~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~ 410 (518)
+.+|+.+|++|++||+.++.|.+.+||+|||+||||+++|+||+.+||.+|+++++.+++++.+.+.+++.+++..++++
T Consensus 300 ~~~K~~~L~~Mi~kLl~l~~g~~~~DD~D~l~NKRv~l~G~Ll~~~fr~~l~~~~~~ik~~l~~~~~~~~~~~~~~~i~~ 379 (1103)
T PRK08565 300 RIKKAYFLGQMASKLLELYLGRREPDDKDHYANKRLRLAGDLLAELFRVAFKQLVKDLKYQLEKSYARGRKLDLRAIVRP 379 (1103)
T ss_pred hhHHHHHHHHHHHHHHhhhcCCCCCCCccccCCcEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHhccc
Confidence 56899999999999999999999999999999999999999999999999999999999999877655667788888888
Q ss_pred cchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc--------CCCCCCccccCCCCcccccccCCCCCc
Q 046830 411 KTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMMCPAETPEGQ 482 (518)
Q Consensus 411 ~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R--------~gk~t~vR~lhps~~G~iCPveTPEG~ 482 (518)
+.||++|++||+||||.+ |++|+||+|||+||+|+|||+| .++.++||+||||||||+||||||||+
T Consensus 380 ~~It~~i~~~~sTGnw~~-----~~sGvSq~ldr~N~l~~lSh~Rrv~s~~~r~~~~~~vR~Lhps~wG~iCPveTPEG~ 454 (1103)
T PRK08565 380 DIITERIRHALATGNWVG-----GRTGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEARDLHGTQWGRICPFETPEGP 454 (1103)
T ss_pred chhhHHHHHHHhcCcccc-----CCcceEEecccCCHHHHHHHHhhccCCcccCCCCccccccChhhccccCCCCCCCcc
Confidence 899999999999999986 5699999999999999999999 356789999999999999999999999
Q ss_pred cccccccccceEEEecCCChhhHHHHHHHcCCccc
Q 046830 483 ACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517 (518)
Q Consensus 483 ~cGLi~~La~~a~is~~~~~~~i~~~l~~~g~~~~ 517 (518)
+|||++|||++|+|++..+.+.|.++|.++|++++
T Consensus 455 ~cGLv~~LA~~a~It~~~~~~~i~~~l~~~G~~~~ 489 (1103)
T PRK08565 455 NCGLVKNLALMAQISVGVDEEEVEEILYELGVVPV 489 (1103)
T ss_pred ccchhhhhhcccccccCCChHHHHHHHHHcCCCch
Confidence 99999999999999999888999999999999864
No 4
>KOG0216 consensus RNA polymerase I, second largest subunit [Transcription]
Probab=100.00 E-value=4.9e-92 Score=746.50 Aligned_cols=477 Identities=24% Similarity=0.361 Sum_probs=401.9
Q ss_pred HHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCC--CCcccccCH
Q 046830 21 AWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTES--DGETATLFL 98 (518)
Q Consensus 21 ~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~--~~~~~~l~P 98 (518)
.|+.-+.+-.+++++++|++|||.-.+.|+....-+.+.-.... .......++++++++.+|..+.. ++..++|+|
T Consensus 5 ~~k~~p~fp~l~~a~~pHi~sfnal~~~gll~~~v~~~~ek~~~--~~g~kis~~ve~i~iakP~l~~~~~ss~~r~lyP 82 (1111)
T KOG0216|consen 5 PPKDYPSFPELQDAASPHIDSFNALTNGGLLNAGVAGIAEKVPL--KAGDKISMKVESIQIAKPMLSDKVHSSDTRKLYP 82 (1111)
T ss_pred CcccCccchhhhhhhhhhhccccchhhhhHHHHHhhchhhhccc--ccCCceeEEEEEEEecCCCCCccccccccccccc
Confidence 46667778888999999999999988777655443221111100 11123456789999999998753 357899999
Q ss_pred HHHHhcCCCcceeEEEEEEEEEeecC-----cccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEEeCceeE--
Q 046830 99 KAARLRNLTYSAPLYVDVTKRVIKKG-----HDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKV-- 171 (518)
Q Consensus 99 ~ecR~r~~TYs~~l~v~v~~~~~~~~-----~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFIING~ErV-- 171 (518)
.|||+|++||+|.+.|++.|.+++.. .+.|.+||||+|++|||+|++++|++.+||++.|+||||||||+|||
T Consensus 83 aEcRqR~~TY~Gkl~v~v~wsVNg~~~~~e~~dlG~vPIMlrSklChL~g~sp~eLV~hkEe~~EmGGYFIvNGIEKvIR 162 (1111)
T KOG0216|consen 83 AECRQRGLTYKGKLVVRVSWSVNGGHVVIEKRDLGHVPIMLRSKLCHLNGASPKELVKHKEESSEMGGYFIVNGIEKVIR 162 (1111)
T ss_pred hhHhhccceecceEEEEEEEEECCeeeeeeeeecCccceEEeccccccCCCChHHHhhccCchhhcCcEEEEcChHHhhh
Confidence 99999999999999999999987532 35689999999999999999999999999999999999999999999
Q ss_pred -EEEeeecccCceEEE-----eecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccc--c
Q 046830 172 -LIAQEKMSTNHVYVF-----KKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRT--E 243 (518)
Q Consensus 172 -ii~q~~~s~n~~~~~-----~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~--~ 243 (518)
+|+|+| |+|++. ++|+++++.|++.+||++++++ +.++.|||.. +|++.++|.|+|+ .
T Consensus 163 mLIm~RR---NHPiAiIR~Sfk~RG~~yS~yGVsmRcVReDqS--svtn~LHYLn---------nGtv~~~F~~rK~eyl 228 (1111)
T KOG0216|consen 163 MLIMPRR---NHPIAIIRPSFKDRGSSYSDYGVSMRCVREDQS--SVTNVLHYLN---------NGTVMFRFSHRKREYL 228 (1111)
T ss_pred hheeccC---CCceEEechhhhhcCCCccccceEEEEeccccc--cceeEEEEec---------CCcEEEEEEEeeeeeh
Confidence 688888 999864 4688999999999999999985 4556799995 5889999998886 5
Q ss_pred chhhhHHHhcCCCCHHHHHHHhhhcC-----CcHHHHHHhhhhHHHHhcccccc--eeeecCcccc--ccchhhHHHHHH
Q 046830 244 IPIIILFRALGFTADEDILEHICYDF-----QDTQMMELLRPSLEEAFFIQNQQ--YIGKRGATVG--VTREKMIKYAKE 314 (518)
Q Consensus 244 IPl~illrALg~~sd~eI~~~i~~~~-----~~~~~~~~L~~~~~~~~~~~~~~--~ig~~~~~~~--~~~~~~~~~~~~ 314 (518)
+|++++||||-.++|+||++.+..+. ...++..+|+...++....++|. |||.+||.+. .+...+.+.+++
T Consensus 229 vPv~lILKAL~~tsDeEIf~~lv~g~~gdqfl~~rv~~mLr~v~ee~l~trtqcl~yLGs~FRaVl~~v~~~~D~evg~f 308 (1111)
T KOG0216|consen 229 VPVVLILKALTNTTDEEIFEGLVGGDEGDQFLTSRVELMLREVQEENLFTRTQCLQYLGSRFRAVLDFVPEQPDLEVGRF 308 (1111)
T ss_pred hhHHHHHHHHhccCHHHHHHHHhCCccCceeHHHHHHHHHHHHhhcccccHHHHHHHHhhhhhhhhcCCCCCchHHHHHH
Confidence 99999999999999999999997662 23478888988888654444443 9999999543 234678899999
Q ss_pred HHHhccCCCCCCCCcchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHh
Q 046830 315 ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394 (518)
Q Consensus 315 il~~~~l~hl~~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~ 394 (518)
+|+++++.|+++. .+||.+|++|++||++++.|++.+||+|+..||+++++|+|++..+++.++.|++.++..+.+
T Consensus 309 ILr~~VlvHLd~~----~DKF~lLifmiqKL~slv~ge~~~dnpDs~q~qEil~~ghl~~~~LkEriEe~l~~~~~~vr~ 384 (1111)
T KOG0216|consen 309 ILREYVLVHLDSD----EDKFNLLIFMIQKLYSLVDGECTPDNPDSPQNQEILLPGHLYGSILKERIEEWLRFISAQVRR 384 (1111)
T ss_pred HHHhheEEEeccc----HHHHHHHHHHHHHHHHHhcCCcCCCCCCChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 489999999999999999999999999999999999999999999999999999977766666
Q ss_pred hhcC-CCCC---c---HHHhhh--hcchhHHHHHHhccCCCCCCCC--CCccccceeeccccCccccccccc--------
Q 046830 395 CVDN-GKDV---N---LQFAIK--AKTITGGLKYSLATGNWGQGNA--AGTRAGVSQVLNCLTYASTFTYYL-------- 455 (518)
Q Consensus 395 ~~~~-~~~~---~---~~~~i~--~~~it~~i~~~f~TGnw~~~~~--~~~~sG~sq~ldr~N~l~~lSh~R-------- 455 (518)
.+.+ +... + +..++. +..|+++|++|++|||+.+.++ ++|++|++.++||+|++|++||||
T Consensus 385 ~l~~~~~~~~~~~~~~i~~~~~r~~~~Ig~~me~fLsTGnl~s~sgldLqQ~sG~tv~AEriNf~RflShFRavhRGa~f 464 (1111)
T KOG0216|consen 385 DLYKLGFKEDFLDISAIRKVFMRTNGNIGRKMEYFLSTGNLVSRSGLDLQQTSGYTVVAERINFYRFLSHFRAVHRGAFF 464 (1111)
T ss_pred HHHhhcCCchhHhHHHHHHHHhhccccHHHHHHHHHhcCCeeeccchhhHhhcCcEEehhhhhHHHHHHHHHHHhcccch
Confidence 5543 2222 2 223332 2449999999999999999986 489999999999999999999999
Q ss_pred -CCCCCCccccCCCCcccccccCCCCCccccccccccceEEEecCC-ChhhHHHHHHHcCCccc
Q 046830 456 -SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS-AAYPILEFLEEWGTENF 517 (518)
Q Consensus 456 -~gk~t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is~~~-~~~~i~~~l~~~g~~~~ 517 (518)
++++|.||+|.|++|||+||||||||+||||+||||..|+|+++. +...|..+|.++||.|.
T Consensus 465 ~~mrTTtvRKLlPEsWGFlCPVHTPDG~PCGlLnH~t~~c~I~t~~dd~s~ip~~L~~~Gm~p~ 528 (1111)
T KOG0216|consen 465 AEMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHMTRTCRIVTRPDDVSFIPSILFELGMVPS 528 (1111)
T ss_pred hheeehhhHhhCchhhcccccccCCCCCchhHHHhhhhheeEeecCcchhhhhHHHHhcCCCch
Confidence 568899999999999999999999999999999999999999875 45679999999999874
No 5
>COG0085 RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
Probab=100.00 E-value=9.4e-89 Score=757.45 Aligned_cols=441 Identities=32% Similarity=0.483 Sum_probs=360.1
Q ss_pred hhHHHHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCCcccc
Q 046830 16 TTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETAT 95 (518)
Q Consensus 16 ~~~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~~~~~ 95 (518)
.+.+++|++++++|+.|+|+++|++|||+|+.+||++++++++||+. .++...++|.++++++| .+
T Consensus 9 ~r~r~~~~~i~~~~~~p~Lv~~QldSyn~ff~~gLq~i~~~i~PI~~-----~~~~~~Lef~~~~l~~p---------~k 74 (1060)
T COG0085 9 KRIRDSFGKIPEFLDLPNLVEIQLDSYNAFFLEGLQEVFREIFPIES-----YNGNTELEYGSYRLGEP---------PK 74 (1060)
T ss_pred cccccchhhcccccCCccHHHHHHHHHHHHHHHHHHHHHHhcCceec-----CCCCEEEEEEEEEecCC---------CC
Confidence 37789999999999999999999999999999999999999999984 34578899999999999 36
Q ss_pred cCHHHHHhcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeCceeEEEE
Q 046830 96 LFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEKVLIA 174 (518)
Q Consensus 96 l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING~ErVii~ 174 (518)
++|.|||+|++||+|||+|++++.+...+.. .+.+.++.|+.|. +.||||||||+|||||+
T Consensus 75 ~~p~EcR~R~lTYsapLyv~lrlv~~~~~e~------------------~k~~eV~iG~iPlMt~gGyFIINGsERVIVs 136 (1060)
T COG0085 75 FYPEECRLRGLTYSAPLYVKLRLVVNETGEE------------------IKEQEVYMGDIPLMTRGGYFIINGTERVIVS 136 (1060)
T ss_pred CCHHHHHhcCCccccceEEEEEEEECCcccc------------------cccceEEeccCcEecCCcEEEECCeEEEEEE
Confidence 7999999999999999999999987655431 1234466677777 67999999999999999
Q ss_pred eeecccCceEEEeecC-CCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHhc
Q 046830 175 QEKMSTNHVYVFKKRQ-PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253 (518)
Q Consensus 175 q~~~s~n~~~~~~~~~-~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrAL 253 (518)
|+.+|||.+|..+..+ ..+..|++.+++.+++| ..+.++. +..+.+++. .+++||+++|||||
T Consensus 137 Q~~rSPgvif~~~~~k~~~~~~~~a~vIp~rG~w------l~~e~d~---------~d~~~~rId-~~rkiPvtilLRAL 200 (1060)
T COG0085 137 QEHRSPGVIFVEKKDKTGSKVLYVARVIPYRGSW------LEFEFDP---------KDNLYVRID-RKRKIPVTILLRAL 200 (1060)
T ss_pred EeecCCCeEEecccccCCcceEEEEEEecCCcce------EEEEEcc---------CccEEEEee-eEEEeeHHHHHHHh
Confidence 9999999888765433 22558899999999988 2344442 355677776 34489999999999
Q ss_pred CCCCHHHHHHHhhhc----CCcHHHHHHhhhhHHHHh--ccc---ccceeeecCccccc--cchhhHHHHHHHHHhccCC
Q 046830 254 GFTADEDILEHICYD----FQDTQMMELLRPSLEEAF--FIQ---NQQYIGKRGATVGV--TREKMIKYAKEILQKEMLP 322 (518)
Q Consensus 254 g~~sd~eI~~~i~~~----~~~~~~~~~L~~~~~~~~--~~~---~~~~ig~~~~~~~~--~~~~~~~~~~~il~~~~l~ 322 (518)
|+++|+||++.+..+ ....+..+++....++.. .+. .++|||+++..... ....+.+.++.++.++++|
T Consensus 201 G~~tDeeI~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~i~~~~a~~~i~~r~~~~~~~~~~~gR~k~~~~vl~~~~L~ 280 (1060)
T COG0085 201 GLETDEEIIEAFGGDELTDLVPPEGEEALLEIYEEAKGEKITARNALELIGSRVFVVKRYDAKEGRYKRAKYVLDKELLP 280 (1060)
T ss_pred CCCcHHHHHHHhcccccccccchHHHHHhHHHHhhccCCCcchHHHHHHHhcccccccccccchhhhhhhhhhhhhhHHh
Confidence 999999999999763 222444455555555442 111 33499998865433 3567789999999999999
Q ss_pred CCCCC--Cc--chhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 046830 323 HVGTG--DF--CETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDN 398 (518)
Q Consensus 323 hl~~~--~~--~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~ 398 (518)
|++.. .+ ....|+.+|++|+++|+.+..|.+.+||+|||+||||+++|+||++|||.+|.+|++.+++++.+...+
T Consensus 281 hL~~~~~~~~l~~~~k~~di~~mi~~l~~L~~G~~~~DDiDHlGNKRlrlvGeLl~n~fR~gl~rmer~ikerm~~~~~r 360 (1060)
T COG0085 281 HLGEAGERYDLSRVGKAKDIIAMIKYLIELRLGKGEEDDIDHLGNRRLRLVGELLENLFRVGLSRMERDVKERLEKADKR 360 (1060)
T ss_pred hhcccccccchhhhHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99863 22 234588899999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCcHHHhhhhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc---C------CCCCCccccCCCC
Q 046830 399 GKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL---S------WKLAKPRQLHNSQ 469 (518)
Q Consensus 399 ~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R---~------gk~t~vR~lhps~ 469 (518)
..++.++.|+.++.+|++||||+ ++||||||||+||||+||||| . .+.++||||||||
T Consensus 361 ------~~i~p~dlIn~k~~~Alitgffg-------~sqlSQfmDqtNpLSeLSHkRRIsAlgLsRera~fEvRDvHpTH 427 (1060)
T COG0085 361 ------DTLVPQDLINAKPIHALITGFFG-------RSQLSQFMDQTNPLSELSHKRRLSALGLSRERAGFEVRDVHPTH 427 (1060)
T ss_pred ------hccCchhhcchhHHHHHHhcccc-------ccceeeeeecCChHHhhhhhhceeccCcCccCCCCcccccCccc
Confidence 33445566889999999999999 589999999999999999999 3 3556799999999
Q ss_pred cccccccCCCCCccccccccccceEEEe-cCCChhhHHHHHH-HcCCccc
Q 046830 470 WGMMCPAETPEGQACGLVKNLALMVYIT-IGSAAYPILEFLE-EWGTENF 517 (518)
Q Consensus 470 ~G~iCPveTPEG~~cGLi~~La~~a~is-~~~~~~~i~~~l~-~~g~~~~ 517 (518)
||||||+|||||+|||||||||++|+|+ .+....+...++. .+|+.++
T Consensus 428 yGRiCPiETPEGpNiGLI~sLA~~A~Vn~~Gf~etPy~kv~~g~~~v~~i 477 (1060)
T COG0085 428 YGRICPIETPEGPNIGLIKSLALYARINEYGFLETPYRKVLDGSLVVDEI 477 (1060)
T ss_pred ccccCCCCCCCCcchhHHHHHHHHeEecccCCCCCceEEEEeccccccce
Confidence 9999999999999999999999999999 6655544444444 4665543
No 6
>CHL00001 rpoB RNA polymerase beta subunit
Probab=100.00 E-value=4.5e-82 Score=719.63 Aligned_cols=410 Identities=22% Similarity=0.282 Sum_probs=328.9
Q ss_pred cCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceE--EEEEEEEecCcccCCCCcccccCHHHHHhcCC
Q 046830 29 FEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQS--DFAEIYLSKPMMTESDGETATLFLKAARLRNL 106 (518)
Q Consensus 29 f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i--~f~~~~i~~P~~~~~~~~~~~l~P~ecR~r~~ 106 (518)
|..|+|+++|++|||||+++||++++++++||+. .+....+ .|+++++++|.+ +|.|||+|++
T Consensus 10 ~~~P~Lv~~Q~~SF~~Fl~~gL~~i~~~~~pI~~-----~~~~~~~~~~~~~~~l~~P~~----------~p~ear~r~l 74 (1070)
T CHL00001 10 STIPGFNQIQFEGFCRFIDQGLTEELSKFPKIED-----TDQEIEFQLFVETYQLVEPLI----------KERDAVYESL 74 (1070)
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHHHHhcCCeEC-----CCCCEEEEEEeCeEEECCCCC----------CHHHHHHhCC
Confidence 6789999999999999999999999999999983 2333344 456999999986 6899999999
Q ss_pred CcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeCceeEEEEeeecccCceEE
Q 046830 107 TYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEKVLIAQEKMSTNHVYV 185 (518)
Q Consensus 107 TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING~ErVii~q~~~s~n~~~~ 185 (518)
||+|+++|++.+...+.+ .+ .++.|.+|+.|. |+||||||||+|||||+|++||||.+|.
T Consensus 75 TYsa~l~v~v~l~~~~~~----~i---------------~~~~V~iG~iPlMt~gG~FIING~ERVIVsQ~~rSpg~~~~ 135 (1070)
T CHL00001 75 TYSSELYVPAGLIWKKSR----DM---------------QEQTVFIGNIPLMNSLGTFIINGIYRVVINQILRSPGIYYR 135 (1070)
T ss_pred CCCceeEEEEEEEEcCce----eE---------------EEeEEEEecCCccCCCcEEEEcCcEEEEEEEEeccCCEEEE
Confidence 999999999998632211 10 124578888888 9999999999999999999999999998
Q ss_pred EeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHhcCCCCHHHHHHHh
Q 046830 186 FKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHI 265 (518)
Q Consensus 186 ~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrALg~~sd~eI~~~i 265 (518)
......++..|+|+|+|.+++| +.+.++. ++.++++++.. ++||+++||||||+ +|+||++.+
T Consensus 136 ~~~~~~~~~~y~a~iis~rgsw------l~~e~d~---------~~~i~vri~~~-~kiPi~ilLrALG~-sd~eIl~~~ 198 (1070)
T CHL00001 136 SELDHNGISVYTGTIISDWGGR------LELEIDR---------KARIWARVSRK-QKISILVLLSAMGL-NLREILDNV 198 (1070)
T ss_pred EecCCCCceeEEEEEEecCCCc------eEEEEec---------CCeEEEEecCC-CcccHHHHHHHcCC-CHHHHHHHh
Confidence 7655445668999999999987 2344442 46799999965 79999999999999 599999998
Q ss_pred hhcCCcHHHHHHhhhhHHHHh--ccccc----ceeeecCccccccchhhHHHHHHHHHhccCCC------CCCCCcchh-
Q 046830 266 CYDFQDTQMMELLRPSLEEAF--FIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEMLPH------VGTGDFCET- 332 (518)
Q Consensus 266 ~~~~~~~~~~~~L~~~~~~~~--~~~~~----~~ig~~~~~~~~~~~~~~~~~~~il~~~~l~h------l~~~~~~~~- 332 (518)
+++ . ++..++++.. ...++ .||+++.... .......+.++++|.+.+|+| +|....+..
T Consensus 199 ~~~---~----~l~~~l~~~~~~~~~t~e~Al~~i~~~l~~r-~~~~~~~~~a~~~l~~~ff~~rY~Lg~vGr~~~n~kl 270 (1070)
T CHL00001 199 CYP---E----IFLSFLNDKEKKKIGSKENAILEFYQQFACV-GGDPVFSESLCKELQKKFFQQRCELGRIGRRNMNRKL 270 (1070)
T ss_pred CcH---H----HHHHHHHHHhhccccCHHHHHHHHHHhhccC-CCCcchHHHHHHHHHHHhccccccccccCchhhhhhh
Confidence 653 1 2222222210 11111 1666665211 122344567889998888888 875543221
Q ss_pred -----hHhhHH-----HHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 046830 333 -----KKAYYF-----GHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDV 402 (518)
Q Consensus 333 -----~K~~~L-----~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~ 402 (518)
.|..+| ++|+++|+.+..|....||+|||+||||+++|+||++|||.+|+++.+.+++++++.+++...+
T Consensus 271 ~~~~~~~~~~L~~~Di~~~i~~Ll~l~~G~~~~DDiDhLgNKRvr~vGeLL~~qfr~~l~r~~r~ik~~m~~~~~~~~~~ 350 (1070)
T CHL00001 271 NLDIPENNTFLLPQDVLAAADYLIGMKFGMGTLDDIDHLKNKRIRSVADLLQDQFGLALNRLENAVRGTICGAIRRKLIP 350 (1070)
T ss_pred cccccccceEecHHHHHHHHHHHHHhhcCCCCccchhHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 345656 9999999999999999999999999999999999999999999999999999998765555567
Q ss_pred cHHHhhhhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc------CCCCC------CccccCCCCc
Q 046830 403 NLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL------SWKLA------KPRQLHNSQW 470 (518)
Q Consensus 403 ~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R------~gk~t------~vR~lhps~~ 470 (518)
++..++++++||++|++||+| +||||+|||+||||+|||+| ||+.+ +||+||||||
T Consensus 351 ~~~~lin~~~It~~ik~ff~t------------s~LSQflDqtNpLseltHkRRlsslGpgglsr~~a~fevRdvHpShy 418 (1070)
T CHL00001 351 TPQNLVTSTPLTTTYESFFGS------------HPLSQFLDQTNPLTEIVHGRKLSSLGPGGLTGRTASFRVRDIHPSHY 418 (1070)
T ss_pred CHHHhhCcchHHHHHHhhhcC------------CcceeeeccCCHHHhhhhhhcccccCCCCccccccCCcccccCcccc
Confidence 899999999999999999998 69999999999999999999 55443 6999999999
Q ss_pred ccccccCCCCCccccccccccceEEEe-cCCChhhHHHHH
Q 046830 471 GMMCPAETPEGQACGLVKNLALMVYIT-IGSAAYPILEFL 509 (518)
Q Consensus 471 G~iCPveTPEG~~cGLi~~La~~a~is-~~~~~~~i~~~l 509 (518)
|||||+|||||+|||||+|||++|+|+ .+....++..++
T Consensus 419 GRICPIETPEG~NiGLI~sLA~~A~In~~GfietP~~~v~ 458 (1070)
T CHL00001 419 GRICPIDTSEGINAGLIGSLAIHARIGHWGSLESPFYEIS 458 (1070)
T ss_pred ccccCCCCCCcccccchhhhhhhcccccCCCcccceeeec
Confidence 999999999999999999999999998 443333333333
No 7
>TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit. This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.
Probab=100.00 E-value=7.9e-82 Score=720.90 Aligned_cols=407 Identities=25% Similarity=0.340 Sum_probs=335.4
Q ss_pred HHHHHhhhcccCCcchhHHHHHHHHHHHH----------hHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccC
Q 046830 19 EEAWAVISAYFEEKGLVRQQLDSFDEFNQ----------NTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTE 88 (518)
Q Consensus 19 ~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~----------~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~ 88 (518)
+.+|+.++.+|+.|+|++||++||||||+ +||++++++.+||+.. +..+.++|.++++++|.+
T Consensus 5 r~~~~~~~~~~~~p~Lv~~Qi~SFn~FL~~~~~~~~~~~~gL~eii~~~~pI~~~-----~~~~~l~f~~~~l~~P~~-- 77 (1065)
T TIGR02013 5 RIDFGKIPEVLEVPNLLEIQLDSYDWFLQQDTPPEKRKEEGLEEVFKSIFPIEDY-----TGNIELEYLSYRLGEPKY-- 77 (1065)
T ss_pred eeecccCcccccCCCHHHHHHHHHHHHHcCCCcccccccccHHHHHhccCcEEec-----CCcEEEEEEEEEeCCCCC--
Confidence 45699999999999999999999999999 8999999999999863 456889999999999986
Q ss_pred CCCcccccCHHHHHhcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeC
Q 046830 89 SDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIING 167 (518)
Q Consensus 89 ~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING 167 (518)
+|+|||+|++||+|+|+|++.++..+... .++ ..++.+.+|+.|. +.||||||||
T Consensus 78 --------~p~Ear~r~lTYsa~l~v~v~l~~~~~~~-~~~---------------i~~~~V~iG~iPiMt~gGyFIING 133 (1065)
T TIGR02013 78 --------SVEECKERGLTYSAPLKVKLRLINKEEDG-TKE---------------IKEQDVYMGDIPLMTDRGTFIING 133 (1065)
T ss_pred --------CHHHHHHhCCCcceeEEEEEEEEEeccCC-ccc---------------eeeeeEEEeCCCccCCCceEEECC
Confidence 69999999999999999999986432100 001 1123567788888 8899999999
Q ss_pred ceeEEEEeeecccCceEEEeec--CCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccch
Q 046830 168 SEKVLIAQEKMSTNHVYVFKKR--QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245 (518)
Q Consensus 168 ~ErVii~q~~~s~n~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IP 245 (518)
+|||||+|++||||++|+.... ..++..|+|+|+|.+++| +.+.+.. ++.++++++..+ +||
T Consensus 134 sERVIV~Qe~rspg~~~~~~~~~~~~~~~~~~a~iis~rgsw------l~~e~~~---------~~~i~v~i~~~~-kIP 197 (1065)
T TIGR02013 134 AERVVVSQLHRSPGVFFSSEKDTHKSGKVLFSARIIPYRGSW------LEFETDK---------KDVLYVRIDRKR-KLP 197 (1065)
T ss_pred cEEEEEEEeecCCCEEEEEccccCCCCceEEEEEEEeCCCCc------eEEEEec---------CCeEEEEecCCC-cee
Confidence 9999999999999999987542 223447999999999988 2344442 467999999765 999
Q ss_pred hhhHHHhcCCCCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhccccc----ceeeecCccccccchhhHHHHHHHHHhccC
Q 046830 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQ----QYIGKRGATVGVTREKMIKYAKEILQKEML 321 (518)
Q Consensus 246 l~illrALg~~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~~~~----~~ig~~~~~~~~~~~~~~~~~~~il~~~~l 321 (518)
+++||||||+++|+||++.+.+ +..+.+.|. +.. ..++ .||+++.++.. ....+.++++|++.+|
T Consensus 198 i~illrALG~~sd~eI~~~i~~---~~~i~~~l~----~~~-~~~~e~Al~~i~~~~~~g~---~~~~~~a~~~l~~~f~ 266 (1065)
T TIGR02013 198 ATVLLRALGYTIDTLILNRLGS---GEYIRNTLR----KDP-TNSEEEALVEIYRKLRPGE---PPTVEAARSLLENLFF 266 (1065)
T ss_pred HHHHHHHcCCCcchhhhhhcCc---hHHHHHHHH----hcc-ccCHHHHHHHHHhhcCCCC---cchHHHHHHHHHHHhc
Confidence 9999999999999999998864 344444442 111 1122 27887765421 2335779999998887
Q ss_pred C-------CCCCCC------------cchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHH
Q 046830 322 P-------HVGTGD------------FCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFR 382 (518)
Q Consensus 322 ~-------hl~~~~------------~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~ 382 (518)
| |+|... .....|++||+ |+++|+.+..|...+||+|||+||||+++|+||+.|||.+|+
T Consensus 267 ~~~rY~LghiGr~kln~Kl~~~~~~~~~~l~k~d~l~-mi~~Ll~~~~g~~~~DD~Dhl~NKRvr~aGeLL~~~fr~~l~ 345 (1065)
T TIGR02013 267 DPKRYDLGRVGRYKLNKKLGLDVPEDIGVLTKEDIIA-TIKYLIKLRNGKGEIDDIDHLGNRRIRSVGELLQNQFRVGLA 345 (1065)
T ss_pred CcccccccccchhhhhhhcCcCcCcccceehHHHHHH-HHHHHHHhhcCCCCCcchhhhhccchhhHHHHHHHHHHHHHH
Confidence 6 999421 11124788887 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc------C
Q 046830 383 KLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL------S 456 (518)
Q Consensus 383 ~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R------~ 456 (518)
++.+.+++++.+. +.+.+++..++++++||+++++||+|| ||||+|||+||||+|||+| |
T Consensus 346 rl~k~ik~~l~~~--~~~~~~~~~~i~~~~it~~i~~ff~tg------------glSQ~Ldr~NpLs~lsh~RRlsslgp 411 (1065)
T TIGR02013 346 RMERIVRERMSTQ--DTDTLTPQDLINAKPISAAIKEFFGSS------------QLSQFMDQTNPLAELTHKRRLSALGP 411 (1065)
T ss_pred HHHHHHHHHhhhc--ccccCCHHHhcCccchHHHHHHHhccC------------CcccccccCCHHHhhhhhceecccCC
Confidence 9999999998754 234577889999999999999999996 9999999999999999999 5
Q ss_pred CCC------CCccccCCCCcccccccCCCCCccccccccccceEEEec
Q 046830 457 WKL------AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498 (518)
Q Consensus 457 gk~------t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is~ 498 (518)
|++ ++||+|||||||||||+|||||+|||||+|||++|+|+.
T Consensus 412 ggl~r~~~~~~~RdlHpShyGrICPiETPEG~n~GLVknLA~~a~i~~ 459 (1065)
T TIGR02013 412 GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYARVNE 459 (1065)
T ss_pred CCcCccccCCccCccCccccccccCCCCCCCCccccccchhhhcccCc
Confidence 554 469999999999999999999999999999999999964
No 8
>PRK00405 rpoB DNA-directed RNA polymerase subunit beta; Reviewed
Probab=100.00 E-value=8e-81 Score=716.13 Aligned_cols=411 Identities=26% Similarity=0.363 Sum_probs=332.0
Q ss_pred HHHHHhhhcccCCcchhHHHHHHHHHHH-------HhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCC
Q 046830 19 EEAWAVISAYFEEKGLVRQQLDSFDEFN-------QNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDG 91 (518)
Q Consensus 19 ~~~~~~i~~~f~~~~lv~~qi~SFn~Fi-------~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~ 91 (518)
+.+++.++..+..|+|++||++|||||+ ++||++++++.+||+.. ++++.++|.++++++|.
T Consensus 12 r~~~~~~~~~~~~p~Lv~~Qi~SFn~Fl~~~~~~~~~gL~~ii~~~~pI~~~-----~~~~~l~f~~~~l~~P~------ 80 (1112)
T PRK00405 12 RKSFGKIKEVLELPNLLEIQLDSFDWFLQLDVPPEDEGLEEVFRSIFPIEDF-----NGNLSLEFVSYELGEPK------ 80 (1112)
T ss_pred EeecccccccCCCCCHHHHHHHHHHHHHhcCCcccchhHHHHHHhcCCEEec-----CCcEEEEEeeeEcCCCC------
Confidence 4568888889999999999999999999 99999999999999863 45688999999999996
Q ss_pred cccccCHHHHHhcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeCcee
Q 046830 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEK 170 (518)
Q Consensus 92 ~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING~Er 170 (518)
++|+|||+|++||+|+|+|++.++....+. + .++.|.+|+.|. ++||||||||+||
T Consensus 81 ----~tp~Ear~r~lTYSaplyv~v~l~~~~~~~----i---------------~~~~V~iG~iPiMt~gGyFIING~ER 137 (1112)
T PRK00405 81 ----YDVEECKERGLTYSAPLRVKLRLINKETGE----I---------------KEQEVYMGDIPLMTENGTFIINGTER 137 (1112)
T ss_pred ----CCHHHHHHhCCCCCeeEEEEEEEEEeccCc----e---------------eeeeEEEeccccccCCceEEECCeEE
Confidence 489999999999999999999986432211 0 123567777777 7999999999999
Q ss_pred EEEEeeecccCceEEEeecC--CCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhh
Q 046830 171 VLIAQEKMSTNHVYVFKKRQ--PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248 (518)
Q Consensus 171 Vii~q~~~s~n~~~~~~~~~--~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~i 248 (518)
|||+|++||||.+|..+..+ .++..|.|+|+|.+++| +.+.+.. ++.++++++.. ++||+++
T Consensus 138 VIVsQe~rSPg~~~~~~~~k~~~~k~~y~a~Iis~rGsw------l~~e~d~---------k~~I~vri~~~-~kIPi~i 201 (1112)
T PRK00405 138 VIVSQLHRSPGVYFDHDKDKTSSGKLLYSARIIPYRGSW------LEFEFDP---------KDILYVRIDRR-RKLPVTV 201 (1112)
T ss_pred EEEEEeecCCCEEEEEeccccCCCceeEEEEEEECCCCc------EEEEEec---------CCeEEEEecCC-CcccHHH
Confidence 99999999999998776442 24567999999999988 2344442 46799999954 7999999
Q ss_pred HHHhcCCCCHHHHHHHhhhcCCcH-------------------------HHH--------H-HhhhhHHHHhc---cccc
Q 046830 249 LFRALGFTADEDILEHICYDFQDT-------------------------QMM--------E-LLRPSLEEAFF---IQNQ 291 (518)
Q Consensus 249 llrALg~~sd~eI~~~i~~~~~~~-------------------------~~~--------~-~L~~~~~~~~~---~~~~ 291 (518)
||||||+ ||+||++.++++.... ++. + ++...+++... ..++
T Consensus 202 LLrALGl-sd~eIl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~i~~~l~~~~~~t~ 280 (1112)
T PRK00405 202 LLRALGY-SDEEILDLFYEKEEFGKEIEVPVEYLLGKVLAEDIVDEETGEVLAEANDEITEELDGPYIRNTLEKDPTSSR 280 (1112)
T ss_pred HHHHcCC-CHHHHHHHhcccccccceeccchHHhcccchhhhhcccccceeeeccCCccchhhhhHHHHHHHhhccccCH
Confidence 9999999 9999999986431111 000 0 11122222211 1122
Q ss_pred ----ceeeecCccccccchhhHHHHHHHHHhccC-------CCCCCCCcc--------hh----hHhhHHHHHHHHHHHh
Q 046830 292 ----QYIGKRGATVGVTREKMIKYAKEILQKEML-------PHVGTGDFC--------ET----KKAYYFGHIIHRLLLC 348 (518)
Q Consensus 292 ----~~ig~~~~~~~~~~~~~~~~~~~il~~~~l-------~hl~~~~~~--------~~----~K~~~L~~mi~kLl~~ 348 (518)
.||+++.++.. ....+.++++|.+.|| ||+|....+ .. .|+ .+++|+++|+.+
T Consensus 281 e~Al~~I~k~l~~g~---~~~~e~a~~~l~~~ff~~~rYdL~hiGr~k~nkKl~l~~~~~~~~L~~~-d~~~mi~~Ll~l 356 (1112)
T PRK00405 281 EEALVEIYRRLRPGE---PPTVEAARSLLENLFFDPKRYDLSKVGRYKLNKKLGLDEDEDVRVLTKE-DIIATIKYLINL 356 (1112)
T ss_pred HHHHHHHHhhcCCCC---cchHHHHHHHHHHHhcCccccccccCCceecchhcccCcccccccccHH-HHHHHHHHHHhh
Confidence 27887766421 2334678888887665 999964322 11 234 458999999999
Q ss_pred hcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCC
Q 046830 349 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQ 428 (518)
Q Consensus 349 ~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~ 428 (518)
..|.+.+||+|||+||||+++|+||+.||+.+|+++.+.+++++.+.. .+.+++..++++++||++|++||+||
T Consensus 357 ~~g~~~~DDiDhl~NKRvr~aGeLL~~~fr~~~~rl~k~ik~~l~~~~--~~~~~~~~lin~~~it~~i~~ff~tg---- 430 (1112)
T PRK00405 357 RNGKGEVDDIDHLGNRRVRSVGELLQNQFRIGLSRMERAVRERMSLQD--LDTLTPQDLINAKPVVAAIKEFFGSS---- 430 (1112)
T ss_pred hcccCCCcchhHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCHHHhhCchhHHHHHHHhhccC----
Confidence 999999999999999999999999999999999999999999987642 34678899999999999999999996
Q ss_pred CCCCCccccceeeccccCccccccccc------CCCC------CCccccCCCCcccccccCCCCCccccccccccceEEE
Q 046830 429 GNAAGTRAGVSQVLNCLTYASTFTYYL------SWKL------AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI 496 (518)
Q Consensus 429 ~~~~~~~sG~sq~ldr~N~l~~lSh~R------~gk~------t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~i 496 (518)
||||+|||+||||+|||+| ||++ ++||+|||||||||||+|||||++||||+|||++|+|
T Consensus 431 --------glSQ~Ldq~NpLselshkRRlss~gpggl~r~~a~~~~R~lH~ShyGriCPiETPEG~n~GLV~nLA~~a~i 502 (1112)
T PRK00405 431 --------QLSQFMDQTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARV 502 (1112)
T ss_pred --------CcceeeccCCHHHhhhhhceecccCCCCcCccccCCcccccCccccccccCcCCCCCCccccccchhhcccc
Confidence 8999999999999999999 5554 4699999999999999999999999999999999999
Q ss_pred ec
Q 046830 497 TI 498 (518)
Q Consensus 497 s~ 498 (518)
+.
T Consensus 503 ~~ 504 (1112)
T PRK00405 503 NE 504 (1112)
T ss_pred cc
Confidence 74
No 9
>cd00653 RNA_pol_B_RPB2 RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Probab=100.00 E-value=1.4e-79 Score=698.06 Aligned_cols=366 Identities=43% Similarity=0.633 Sum_probs=304.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCCcccccCHHHHHhcCCCcceeEE
Q 046830 34 LVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLY 113 (518)
Q Consensus 34 lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~~~~~l~P~ecR~r~~TYs~~l~ 113 (518)
|++||++|||+|+++||++++++.+|+.+..+ +....++|.++++++|.+.+. +..++++|+|||++++||+|+++
T Consensus 1 Lv~~qi~SFn~Fl~~gl~~ii~~~~~i~~~~~---~~~~~l~f~~i~i~~P~~~~~-~~~~~l~P~ecRlr~lTYs~~l~ 76 (866)
T cd00653 1 LVKQQIDSFNYFLNVGLQEIVKSIPPITDTDD---DGRLKLKFGDIYLGKPKVEEG-GVTRKLTPNECRLRDLTYSAPLY 76 (866)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCeeeccC---CCeEEEEEEEEEECCcccccc-CccccCCHHHHHhhCCccceeEE
Confidence 68999999999999999999999999987421 235678899999999998766 66788999999999999999999
Q ss_pred EEEEEEEeec------CcccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEEeCceeEEEEeeecccCceEEEe
Q 046830 114 VDVTKRVIKK------GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFK 187 (518)
Q Consensus 114 v~v~~~~~~~------~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFIING~ErVii~q~~~s~n~~~~~~ 187 (518)
|++.+++.+. ....|+|||||+|++|||++++++|++.+||||.|+||||||||+||||++|+.++||+++++
T Consensus 77 v~i~~~~~~~~~~~~~~v~iG~iPIMv~S~~C~L~~~~~~el~~~~E~p~d~GGYFIInG~EkVIi~qi~~~~N~~~~~- 155 (866)
T cd00653 77 VDIRLTVNDKGKIKEQEVFIGEIPIMLRSKLCNLNGLTPEELIKLGECPLDPGGYFIINGTEKVIINQEQRSPNVIIVE- 155 (866)
T ss_pred EEEEEEEecceeEEEEEEEEeeCCcccCcccccccCCCHHHHHhcCCCcccCCCEEEECCceeEEEEEEeccCCeEEEe-
Confidence 9999975432 234579999999999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHhcCCCCHHHHHHHhhh
Q 046830 188 KRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICY 267 (518)
Q Consensus 188 ~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrALg~~sd~eI~~~i~~ 267 (518)
. ....+.+..++.........+ ++.+..+. ....++++++..+
T Consensus 156 ~---~~~~~~~~~~s~~~~~~~~~s--~~~~~~~~------~~~~i~~~i~~~~-------------------------- 198 (866)
T cd00653 156 D---SKGKRIYTKTSIPSYSPYRGS--WLEVKSDK------KKDRIYVRIDLKR-------------------------- 198 (866)
T ss_pred c---CCCcEEEEEEEccCCCcCccE--EEEEEEcc------CCCeEEEEecccC--------------------------
Confidence 1 122345555555442111122 23332210 0234555554322
Q ss_pred cCCcHHHHHHhhhhHHHHhcccccceeeecCccccccchhhHHHHHHHHHhccCCCCCCCCcchhhHhhHHHHHHHHHHH
Q 046830 268 DFQDTQMMELLRPSLEEAFFIQNQQYIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLL 347 (518)
Q Consensus 268 ~~~~~~~~~~L~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~il~~~~l~hl~~~~~~~~~K~~~L~~mi~kLl~ 347 (518)
.++|. .|||++ +.+|++|++||+.
T Consensus 199 --------------~~~al-----~~ig~~-------------------------------------~~~L~~Mi~kLl~ 222 (866)
T cd00653 199 --------------QEEAL-----KYIGKR-------------------------------------FEDLIYMIRKLIL 222 (866)
T ss_pred --------------HHHHH-----HHHHHH-------------------------------------HHHHHHHHHHHHH
Confidence 11111 133322 1889999999999
Q ss_pred hhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCC
Q 046830 348 CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG 427 (518)
Q Consensus 348 ~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~ 427 (518)
+..|.+.+||+|||+||||+++|+||+.+|+..|+++++.++..+++...+.+.++...++++..||++|++||+||||.
T Consensus 223 ~~~g~~~~Dd~D~~~NkRv~~~G~Ll~~lfr~~l~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~It~~i~~~~~TGnw~ 302 (866)
T cd00653 223 LVLGKGKLDDIDHLGNKRVRLAGELLQNLFRSGLKRLEREVKEKLQKQLSKKKDLTPQLLINSKPITSGIKEFLATGNWG 302 (866)
T ss_pred HhcCCCCCCCchhhhCeEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCHHHhccchHHHHHHHHHhhcCCcc
Confidence 99999999999999999999999999999999999999999999988765555567777888888999999999999999
Q ss_pred CCCCCCccccceeeccccCccccccccc---------CCCCCCccccCCCCcccccccCCCCCccccccccccceEEEe
Q 046830 428 QGNAAGTRAGVSQVLNCLTYASTFTYYL---------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497 (518)
Q Consensus 428 ~~~~~~~~sG~sq~ldr~N~l~~lSh~R---------~gk~t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is 497 (518)
+++..+|++|+||+|||+||+|++||+| +++.++||+||||||||+||||||||++||||+|||++|+|+
T Consensus 303 ~~~~~~~~~Gvsq~ldr~N~ls~lsh~Rrv~~~~~~~~~k~~~~R~lhps~~G~iCPveTPEG~~cGLv~~LA~~a~Is 381 (866)
T cd00653 303 SKRFLMQRSGLSQVLDRLNPLSELSHKRRISSLGLFRERKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381 (866)
T ss_pred ccccccccceEEEEcccCCHHHHHHhhhhcccccccccccCCcccccCcccCCccCCCCCCCCccccchhhhhceEeee
Confidence 9888889999999999999999999999 457789999999999999999999999999999999999996
No 10
>CHL00207 rpoB RNA polymerase beta subunit; Provisional
Probab=100.00 E-value=2e-74 Score=653.84 Aligned_cols=398 Identities=23% Similarity=0.272 Sum_probs=317.2
Q ss_pred cccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEE--EEEEecCcccCCCCcccccCHHHHHhc
Q 046830 27 AYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFA--EIYLSKPMMTESDGETATLFLKAARLR 104 (518)
Q Consensus 27 ~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~--~~~i~~P~~~~~~~~~~~l~P~ecR~r 104 (518)
-.|..|+|++.|++||+||+++||++++++++||+. .+....++|. ++++++|.+ +|.|||++
T Consensus 3 ~~~~~Pdll~iQ~~SF~~FL~~GL~~~~~~~~pI~~-----~~~~~~l~~~~~~y~l~~P~~----------~~~Ea~~r 67 (1077)
T CHL00207 3 MNFALPDFLEIQRTSFCWFLNEGLNEELNIFSKIFD-----YTGNLELLLFGKNYKLKYPKY----------NLLSAKSY 67 (1077)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEC-----CCCCEEEEEecceEEEcCCCC----------CHHHHHHh
Confidence 347789999999999999999999999999999984 3445566665 799999985 68999999
Q ss_pred CCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeCceeEEEEeeecccCce
Q 046830 105 NLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEKVLIAQEKMSTNHV 183 (518)
Q Consensus 105 ~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING~ErVii~q~~~s~n~~ 183 (518)
++||+++|+|++.+...+.+ ++ .++.+.+||.|+ |++|||||||+|||||+|+.||||.+
T Consensus 68 ~~TYsa~l~v~~~l~~~~~~----~i---------------~~~~V~lG~iPlMT~~GtFIING~ERViVsQl~RSPGiy 128 (1077)
T CHL00207 68 DSNYSIQIYLPLKFINLKTN----KI---------------KFINYLIGNLPKMTQRGTFIINGLERVIVSQIIRSPGIY 128 (1077)
T ss_pred CCccceeEEEEEEEEEcCCc----eE---------------EEEEEEEeccCccCCCCEEEEcCceeEEEEEeccCCeEE
Confidence 99999999999998643221 11 245689999999 99999999999999999999999988
Q ss_pred EEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHhcCCCCHHHHHH
Q 046830 184 YVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILE 263 (518)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrALg~~sd~eI~~ 263 (518)
|.....+.++..|.|+|+|.+|+| |++..+ .++.++++++. ++++|+++||||||+ |++||++
T Consensus 129 f~~~~~k~~~~~y~a~IIp~rGsw--------l~~e~d-------~k~~i~vridr-~rKipit~lLrALGl-s~~eIl~ 191 (1077)
T CHL00207 129 FKKEIKKNSNKIYSATLIPNRGSW--------IKFELD-------KNKEIWIRIDK-NRKKPLIIFLKALGL-TDQDIYS 191 (1077)
T ss_pred EEEecCcCCceEEEEEEEcCCCce--------EEEEEc-------CCCeEEEEecC-CceeeHHHHHHHhCC-CHHHHHH
Confidence 765434445567999999999988 555542 24689999995 569999999999999 8999999
Q ss_pred HhhhcCCcHHH-HHHhh----hhHHHHhcccccceeeecCccccccchhhHHHHHHHH-------HhccCCCCCCCCc--
Q 046830 264 HICYDFQDTQM-MELLR----PSLEEAFFIQNQQYIGKRGATVGVTREKMIKYAKEIL-------QKEMLPHVGTGDF-- 329 (518)
Q Consensus 264 ~i~~~~~~~~~-~~~L~----~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~il-------~~~~l~hl~~~~~-- 329 (518)
.+.+.. +..+ ...+. .+.++|. .+|++..++.... ..+.+++++ ++|-|+|+|.-..
T Consensus 192 ~~~~~~-~~~~~~~~l~~~~~~~~e~Al-----~~Iy~~lrp~~~~---~~~~a~~~l~~~ff~~~rYdLg~vGR~klN~ 262 (1077)
T CHL00207 192 RLTKSE-FLKKLKPILLNSNSYTNEEIL-----LEIYKNLSPIEPA---TVNDANQNLFSRFFDPKNYDLGKVGRYKINN 262 (1077)
T ss_pred HHhccc-hHHHHHHHHhccCcccHHHHH-----HHHHHhcCCCCCc---cHHHHHHHHHHHhcChhcccccccchhhhhh
Confidence 886421 1111 11111 0111121 1455554432211 123344443 5677889986321
Q ss_pred ---------chhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 046830 330 ---------CETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGK 400 (518)
Q Consensus 330 ---------~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~ 400 (518)
...-++..++.|+++|+.+..|....||+|||+||||+++|+||++|||.+|.++.+.+++++.+.. .+
T Consensus 263 kl~~~~~~~~~~l~~~Dil~~i~~Li~l~~g~~~~DDiDHL~NRRvrsvGELlq~qfr~gl~rler~ike~m~~~~--~~ 340 (1077)
T CHL00207 263 KLNLNIPERVRNLTYEDILSIIDKLINLKINKGNFDDIDHLKNRRVRSVGELLQNQFRIGLKRLERILRNRMTICD--ID 340 (1077)
T ss_pred hccCCcCccCceecHHHHHHHHHHHHHhhcCCCcccchhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHhhhcc--cc
Confidence 1112234577899999999999889999999999999999999999999999999999999997542 34
Q ss_pred CCcHHHhhhhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc------CCCCCC------ccccCCC
Q 046830 401 DVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL------SWKLAK------PRQLHNS 468 (518)
Q Consensus 401 ~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R------~gk~t~------vR~lhps 468 (518)
.+++..++++++++..|++||++ +||||+|||+||||+|||+| ||++++ +|++|||
T Consensus 341 ~~tp~~lin~k~lt~~ikeFFgs------------s~LSQfmDQtNpLselTHKRRlsaLGpGGLsR~ra~fevRdvH~t 408 (1077)
T CHL00207 341 SLSKFNLINPKPLIALIREFFGS------------SQLSQYMDQTNPLSELTHKRRISILGPGGLDKDRISFAVRDIHPS 408 (1077)
T ss_pred cCChhhcccchhHHHHHHHhhcc------------CCccceecccChHHhhhccceeeccCCCcccccccCCcccccCcc
Confidence 57888999999999999999997 69999999999999999999 888875 9999999
Q ss_pred CcccccccCCCCCccccccccccceEEEec
Q 046830 469 QWGMMCPAETPEGQACGLVKNLALMVYITI 498 (518)
Q Consensus 469 ~~G~iCPveTPEG~~cGLi~~La~~a~is~ 498 (518)
|||||||||||||+||||+++||++|.|..
T Consensus 409 hyGRiCPIETPEG~n~Gli~~la~~~~in~ 438 (1077)
T CHL00207 409 HYGRICPIETPEGPNCGLIGSLATNARINK 438 (1077)
T ss_pred ccccccCCCCCCCcccccccchhhhccccC
Confidence 999999999999999999999999999954
No 11
>KOG0215 consensus RNA polymerase III, second largest subunit [Transcription]
Probab=100.00 E-value=3.2e-73 Score=600.86 Aligned_cols=481 Identities=36% Similarity=0.604 Sum_probs=400.4
Q ss_pred cchhHHHHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCC-c
Q 046830 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDG-E 92 (518)
Q Consensus 14 ~~~~~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~-~ 92 (518)
++.+.++.|.++++|++..+||++|++|||+|++++|+.+++....|..+ .++.+.++|.++++++|++.+..+ .
T Consensus 39 ~i~~~~dk~~lvp~flkvkglvkqhldsfnyfv~~~ik~iv~an~~itsd----~dp~fylky~dirvg~Ps~~~~~~~~ 114 (1153)
T KOG0215|consen 39 PIKPLEDKWQLVPAFLKVKGLVKQHLDSFNYFVDVDIKKIVKANQLITSD----VDPSFYLKYLDIRVGKPSIEEGNNVT 114 (1153)
T ss_pred CCCChHHhHHhHHHHHhhhhHHHHHHhhhhhhhhhhHHHHHHhhcccCcC----cCchhhheeeeeeccCcchhhccccc
Confidence 45677899999999999999999999999999999999999999888653 345778899999999999987654 3
Q ss_pred ccccCHHHHHhcCCCcceeEEEEEEEEEe-----ecCcccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEEeC
Q 046830 93 TATLFLKAARLRNLTYSAPLYVDVTKRVI-----KKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIING 167 (518)
Q Consensus 93 ~~~l~P~ecR~r~~TYs~~l~v~v~~~~~-----~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFIING 167 (518)
...++|+|||+|++||+|+++|+++++.. +.+...+.+|||++|++|.|++..+.++.+.+|||+|+||||||+|
T Consensus 115 ~~~i~p~ecrlrd~tysa~i~vdieytrg~~~~~~~~v~igrmpimlrs~rcvl~~~~e~~~a~~~ecpldpggyfiv~G 194 (1153)
T KOG0215|consen 115 NDNITPHECRLRDMTYSAPIYVDIEYTRGRQIIAKRDVIIGRMPIMLRSSKCVLRGKDEEELARLNECPLDPGGYFIVKG 194 (1153)
T ss_pred cccCCchheeehhhhcccceeEEEEEecCcceEEecccccccchhhhhccccccCCccHHHHHHhccCCCCCCceeEecc
Confidence 46799999999999999999999998632 3455678999999999999999999999999999999999999999
Q ss_pred ceeEEEEeeecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhh
Q 046830 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247 (518)
Q Consensus 168 ~ErVii~q~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~ 247 (518)
.|||++.|+..+-|++.+...+.+ .+-|++-|..... .+..++... ++...++......+||++
T Consensus 195 ~ekViLiqeqlsknrii~~~~k~~---~~~~svtsst~e~---kskt~v~~k----------~~k~ylk~~~~~d~ipiv 258 (1153)
T KOG0215|consen 195 TEKVILIQEQLSKNRIIVEEDKKG---NLQASVTSSTHER---KSKTYVTTK----------KGKYYLKHNSFTDDIPIV 258 (1153)
T ss_pred ceeEEEehhhhhccCeeeccccCC---ccccccccceeee---cceEEEEec----------cceeeeehhhhhccCCEE
Confidence 999999999999999987422211 3445444433222 122122221 355566666556789999
Q ss_pred hHHHhcCCCCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhc--ccccc----eeeecCccccccchhhHHHHHHHHHhccC
Q 046830 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFF--IQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEML 321 (518)
Q Consensus 248 illrALg~~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~--~~~~~----~ig~~~~~~~~~~~~~~~~~~~il~~~~l 321 (518)
++++|+|..||+||.+.++. +....+....+++++.. .++++ |+|.........+.+..+.+.+++...++
T Consensus 259 iv~ka~g~~sd~ei~~~vg~---~~~y~~~~~~s~ee~~~~~v~tqqqal~y~~~kvk~~~~t~~~~~~e~~~~l~~~~l 335 (1153)
T KOG0215|consen 259 IVLKAMGLESDQEIVQLVGG---DSKYQDIFAPSLEECVSLGVYTQQQALEYIGSKVKVKRGTTPTKDEEALEVLSTTVL 335 (1153)
T ss_pred EEEeeccccchHHHHHHhhc---chHHHHhhccchhhhhhhhhHHHHHHHHHhhheEEeccCCCCCchHHHHHHHHhhhe
Confidence 99999999999999999875 45566667778877653 23332 77765433222334455778999999999
Q ss_pred CCCCCCCcchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCC--
Q 046830 322 PHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNG-- 399 (518)
Q Consensus 322 ~hl~~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~-- 399 (518)
+|+...+.++..|+.+++.|+++++....+.-..||+|.++|||+.++|+|+..+|+..|+++...++....+.+.+.
T Consensus 336 ahv~v~~~~~r~K~~yi~~m~rr~~~a~l~~~~~ddrd~~gnkrlelagqllsllfeD~fk~~n~e~k~~~dk~l~k~~r 415 (1153)
T KOG0215|consen 336 AHVPVPDLNFRMKAIYIGLMVRRVIQAMLNKLAMDDRDYVGNKRLELAGQLLSLLFEDLFKRFNSELKKNIDKILKKPIR 415 (1153)
T ss_pred eceeccCCCCcceeehHHHHHHHHHHHHhCcccccchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 999988888899999999999999999999999999999999999999999999999999999988887776655431
Q ss_pred -CCCcHHHhh--hhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc--------CCCCCCccccCCC
Q 046830 400 -KDVNLQFAI--KAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNS 468 (518)
Q Consensus 400 -~~~~~~~~i--~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R--------~gk~t~vR~lhps 468 (518)
..+++-..+ .++.||+++.+++|||||..++..|.+.|++|++.|++|.+.|..+. ..|..+||.|+||
T Consensus 416 a~~fD~~~~~n~~~~~it~~l~ra~stgnw~iKrfrmer~gvt~VlsrlSyisaLgmmtri~s~fektrkvsgprSlq~s 495 (1153)
T KOG0215|consen 416 AQEFDALKHLNVRANMITSGLERAISTGNWSIKRFRMERAGVTQVLSRLSYISALGMMTRINSQFEKTRKVSGPRSLQPS 495 (1153)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCchHHHHhhhhhccceeeehhhhhhhhhhhheehhhhheeehhccCccccChh
Confidence 224444444 45669999999999999999999999999999999999999987665 5677899999999
Q ss_pred CcccccccCCCCCccccccccccceEEEecCCChhhHHHHHHHcCCccc
Q 046830 469 QWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517 (518)
Q Consensus 469 ~~G~iCPveTPEG~~cGLi~~La~~a~is~~~~~~~i~~~l~~~g~~~~ 517 (518)
|||.+||.+||||..|||++|||++++|+++.+..++...+..+|++.+
T Consensus 496 qwgmlcp~dtpegeacglvknlalmthittd~ee~pi~~~~~k~gv~di 544 (1153)
T KOG0215|consen 496 QWGMLCPSDTPEGEACGLVKNLALMTHITTDSEEKPILKLCYKLGVEDI 544 (1153)
T ss_pred hcccccCCCCCCccccccccchHHHhcccCCCCcchhHHHHHHhcceee
Confidence 9999999999999999999999999999999999999999999998753
No 12
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=100.00 E-value=2.8e-69 Score=631.92 Aligned_cols=435 Identities=22% Similarity=0.295 Sum_probs=322.7
Q ss_pred cchhHHHHHHh-hhcccCCcchhHHHHHHHHHHHH-----hHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCccc
Q 046830 14 EETTQEEAWAV-ISAYFEEKGLVRQQLDSFDEFNQ-----NTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMT 87 (518)
Q Consensus 14 ~~~~~~~~~~~-i~~~f~~~~lv~~qi~SFn~Fi~-----~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~ 87 (518)
+..+.+.+|+. .+..+..|+|++.|.+||+||++ +||++++++++||+ +++....++|.++.+++|.++
T Consensus 11 ~~~~~R~~f~~~~~~~~~~PdL~~iQ~~Sf~~Fl~~~~~~~GL~~~f~~ifPI~-----d~~g~~~lefv~y~l~~Pk~~ 85 (2836)
T PRK14844 11 GAFVPRVSYSRSIDLKDSLLDLVKVQKESYDSFTPKNKGNERLEVIFHTIFPIN-----DPLHRATIEFISCRVDDPKYD 85 (2836)
T ss_pred CCceeeeecccCCcccCCCCCHHHHHHHHHHHHhcCCCccccHHHHHHhcCCeE-----CCCCCEEEEEEEEEeCCCCCC
Confidence 45566777887 44558999999999999999998 69999999999998 356678899999999999874
Q ss_pred CCCCcccccCHHHHHhcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccc---------cCCCCHHHHHHhCCccC-
Q 046830 88 ESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCT---------LYQNSQKALTELGECPY- 157 (518)
Q Consensus 88 ~~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~---------L~~~~~~e~i~~gE~p~- 157 (518)
|.||+++++||++||+|++++...+.+.+..+- +|.... .... .+|.|++||.|+
T Consensus 86 ----------~~Ec~~r~~TYsapl~v~~rL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i-keq~VylGdiPLM 150 (2836)
T PRK14844 86 ----------ESECIKRGITFSAQVIASIRLVIMQDGISLDEY----KSIKESGDHSKLATVIKSI-EEQEVHFCELPMM 150 (2836)
T ss_pred ----------HHHHHhcCCcceeeEEEEEEEEEeccccccccc----cccccccccccccccccce-eeeeEEEecCCcc
Confidence 689999999999999999999752210000000 000000 0011 345689999999
Q ss_pred CCCceEEEeCceeEEEEeeecccCceEEEeec---CCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEE
Q 046830 158 DEGGYFIINGSEKVLIAQEKMSTNHVYVFKKR---QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIH 234 (518)
Q Consensus 158 d~GGYFIING~ErVii~q~~~s~n~~~~~~~~---~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~ 234 (518)
+..|+|||||+|||||+|++||||.+|..... ..++..|+|+|+|.||+| |++..+ .++.++
T Consensus 151 T~~GTFIING~ERVIVSQL~RSPGVyF~~~~~kt~~sgk~lysa~IIP~RGsW--------LefE~D-------~kd~ly 215 (2836)
T PRK14844 151 TDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSARVIPYRGSW--------LDIEFD-------VKDHLY 215 (2836)
T ss_pred CCCeEEEEcCcceEEEEcceeCCeEEEEcccCcccCCCceeEEEEEecCCcce--------EEEEEc-------CCCeEE
Confidence 99999999999999999999999988865432 234557999999999998 666653 246899
Q ss_pred EEeccccccchhhhHHHhcCCCCHHHHHHHhhhc----CCcH-------------------------------------H
Q 046830 235 ATLPYIRTEIPIIILFRALGFTADEDILEHICYD----FQDT-------------------------------------Q 273 (518)
Q Consensus 235 ~~~~~~~~~IPl~illrALg~~sd~eI~~~i~~~----~~~~-------------------------------------~ 273 (518)
++++ +++++|+++||||||+ |++||++.+... ..+. .
T Consensus 216 vRID-RkRKiPiT~LLrALGl-s~edIL~~F~~~~~~~~~d~~~~~~~~~e~l~g~~~~~Di~d~~g~vlvdkgrrit~~ 293 (2836)
T PRK14844 216 FRID-RKRKLPISVLLKALGL-SNNDILDRFYEKIKYIKHKDGWKVPFVPDKFKGVRLPFDLMDVEGNVLLKANVRITSR 293 (2836)
T ss_pred EEec-CCeeeeHHHHHHHhCC-ChHHHHHhhcCceEEEEccCceeeccCHHHHhCCccceeeeccCCCEEEecCccccHH
Confidence 9999 5789999999999999 899999976421 0000 0
Q ss_pred HHHHhhh----------------hH-HHHhccccc-------------------------------------ceeeecCc
Q 046830 274 MMELLRP----------------SL-EEAFFIQNQ-------------------------------------QYIGKRGA 299 (518)
Q Consensus 274 ~~~~L~~----------------~~-~~~~~~~~~-------------------------------------~~ig~~~~ 299 (518)
....+.. .+ ++..+..+. .|+...++
T Consensus 294 ~~krlk~~gvkkl~i~~~~l~g~~LaeDIVD~eTGEiL~eagteIT~e~ik~l~~~gi~~i~~l~~d~~~~~~~i~~tL~ 373 (2836)
T PRK14844 294 LAKKLYDNELKEYLVPFDSICGLFLAEDLIDSASSTKILSAGESIKLEDIKKLELLSIDEISVLNIDNLSVGPYILNTLF 373 (2836)
T ss_pred HHHHHHHcccCcccCchHhhcCceehhhhcCCCCCeEEEcCCCccCHHHHHHHHHcCCCceeeEeecccccchHHHHHHh
Confidence 0000000 00 000000000 01100000
Q ss_pred c----------------ccccchhhHHHHHHHHHhccCC-C---CC-CCCcchhhHh-------------hHHHHHHHHH
Q 046830 300 T----------------VGVTREKMIKYAKEILQKEMLP-H---VG-TGDFCETKKA-------------YYFGHIIHRL 345 (518)
Q Consensus 300 ~----------------~~~~~~~~~~~~~~il~~~~l~-h---l~-~~~~~~~~K~-------------~~L~~mi~kL 345 (518)
. ..+......+.++.++++.+|- . +| .++...++|. .-+..++++|
T Consensus 374 ~D~~~~~e~Al~eIy~~lRpge~~~~e~a~~l~~~~ff~~~~YdLg~vGR~k~N~kl~~~~~~~~~~l~~~Dii~~i~~L 453 (2836)
T PRK14844 374 LDENMSYQDALYEIYKVLRPGEVPVLEIVEEFFRNLFFSPEYYDLSNIGRLKLNSYLGLNYDEDLTVLTHEDIIEIVRKI 453 (2836)
T ss_pred hcccccHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHhcCccccccccchhhhhhhhhccCCCCCCcEecHHHHHHHHHHH
Confidence 0 0000011234567777765543 1 11 2222333443 1356799999
Q ss_pred HHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCC
Q 046830 346 LLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGN 425 (518)
Q Consensus 346 l~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGn 425 (518)
+.+..|....||+|||+||||+++|+||++||+.+|.++.+.+++++... +...+++..++++++++.++++||+|
T Consensus 454 i~l~~g~~~~DDiDhL~NRRvr~vGeLl~~qfr~gl~r~~~~i~e~~~~~--~~~~~~p~~lin~~~l~~~i~~ff~s-- 529 (2836)
T PRK14844 454 VLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRTGLLKLERAVVDSMSTS--SLDKVSPSDFINPKVLTNVLRDFFNS-- 529 (2836)
T ss_pred HHHhcCCCcccchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccccchhhcccchhHHHHHHHHhcc--
Confidence 99999999999999999999999999999999999999999999998642 34567889999999999999999998
Q ss_pred CCCCCCCCccccceeeccccCccccccccc------CCCCC------CccccCCCCcccccccCCCCCccccccccccce
Q 046830 426 WGQGNAAGTRAGVSQVLNCLTYASTFTYYL------SWKLA------KPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 493 (518)
Q Consensus 426 w~~~~~~~~~sG~sq~ldr~N~l~~lSh~R------~gk~t------~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~ 493 (518)
+||||+|||+||||+|||+| ||+++ ++|++||||||||||||||||+|||||++||++
T Consensus 530 ----------s~LSQfmDQtNpLseltHkRRlsaLGPGGL~r~~a~fevRdvH~shyGRiCPIETPEG~NiGLI~SLA~y 599 (2836)
T PRK14844 530 ----------SQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIY 599 (2836)
T ss_pred ----------cchhhhccCcChhhhhhhcceecccCCCCcccccCCCcccccCccccccccCCCCCCCCcccchhhhhhh
Confidence 69999999999999999999 78775 599999999999999999999999999999999
Q ss_pred EEEecC
Q 046830 494 VYITIG 499 (518)
Q Consensus 494 a~is~~ 499 (518)
|+|...
T Consensus 600 arIn~~ 605 (2836)
T PRK14844 600 ARINKY 605 (2836)
T ss_pred eeccCC
Confidence 999543
No 13
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=100.00 E-value=9.3e-69 Score=629.69 Aligned_cols=428 Identities=22% Similarity=0.299 Sum_probs=324.3
Q ss_pred HHHHHHhhhcccCCcchhHHHHHHHHHHHH------hHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCC
Q 046830 18 QEEAWAVISAYFEEKGLVRQQLDSFDEFNQ------NTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDG 91 (518)
Q Consensus 18 ~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~------~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~ 91 (518)
.+.+|+.++..+..|+|++.|.+||+||++ +||++++++++||+ +++....++|.++.+++|.++
T Consensus 11 ~R~~f~k~~~~~~iPdLleIQ~~SF~~FLq~~~~~~~GL~e~f~~~fPI~-----d~~g~~~Lefv~Y~l~~Pk~~---- 81 (2890)
T PRK09603 11 LRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQ-----DEHNRITLEYAGCEFGKSKYT---- 81 (2890)
T ss_pred EEeecccCCccCCCCCHHHHHHHHHHHHHhCCCcccccHHHHHHhcCCeE-----CCCCcEEEEEEEEEeCCCCCC----
Confidence 456799999999999999999999999998 79999999999998 356678899999999999874
Q ss_pred cccccCHHHHHhcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeCcee
Q 046830 92 ETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEK 170 (518)
Q Consensus 92 ~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING~Er 170 (518)
|.||+++++||++||+|++++.+.+.+...++ .- ..+.. .+|.|++|++|+ +..|+|||||+||
T Consensus 82 ------~~Ec~~rg~TYsapL~v~~rL~~~~~~~~t~~-~~-------~ikei-keq~VylGdiPLMT~~GTFIING~ER 146 (2890)
T PRK09603 82 ------VREAMERGITYSIPLKIKVRLILWEKDTKSGE-KN-------GIKDI-KEQSIFIREIPLMTERTSFIINGVER 146 (2890)
T ss_pred ------HHHHHhhCCcccccEEEEEEEEEeeccccccc-cc-------cccce-EEeeEEEecCCccCCCceEEEcCcee
Confidence 68999999999999999999975332211110 00 00001 356699999999 9999999999999
Q ss_pred EEEEeeecccCceEEEeec--CCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhh
Q 046830 171 VLIAQEKMSTNHVYVFKKR--QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIII 248 (518)
Q Consensus 171 Vii~q~~~s~n~~~~~~~~--~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~i 248 (518)
|||+|++||||.+|..... ..++..|+|+|+|.||+| |++..+ .++.+|++++ +++++|+++
T Consensus 147 VIVsQL~RSPGVyF~~~~~k~~s~k~lysa~IIP~RGsW--------LefE~D-------~kd~l~vrID-rkrKipit~ 210 (2890)
T PRK09603 147 VVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSW--------LYFEYD-------SKDVLYARIN-KRRKVPVTI 210 (2890)
T ss_pred EEEeeeccCCeeEEeeccCcCCCCceeEEEEEecCCcce--------EEEEEc-------CCCeEEEEEc-CcceecHHH
Confidence 9999999999988865432 224567999999999998 566653 2578999999 578999999
Q ss_pred HHHhcCCCCHHHHHHHhhhc----CCc------------------------------------HHHHH------------
Q 046830 249 LFRALGFTADEDILEHICYD----FQD------------------------------------TQMME------------ 276 (518)
Q Consensus 249 llrALg~~sd~eI~~~i~~~----~~~------------------------------------~~~~~------------ 276 (518)
||||||+ +++||++.+... +.+ .....
T Consensus 211 lLrAlG~-s~edIl~~f~~~~~~~i~~~~~~~~~~~~~l~~~~~~di~d~~g~vlv~~g~rit~~~~~~l~~~g~k~l~~ 289 (2890)
T PRK09603 211 LFRAMDY-QKQDIIKMFYPLVKVRYENDKYLIPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEY 289 (2890)
T ss_pred HHHHhCC-CHHHHHHHhcccceEEEcccceeecccHHHhcCccceeecccCCCEEEecCccccHHHHHHHHhcCCceecc
Confidence 9999999 899999977410 000 00000
Q ss_pred -------------------Hhhhh--------HHHHhccccc---------------------------ceeeecCcc--
Q 046830 277 -------------------LLRPS--------LEEAFFIQNQ---------------------------QYIGKRGAT-- 300 (518)
Q Consensus 277 -------------------~L~~~--------~~~~~~~~~~---------------------------~~ig~~~~~-- 300 (518)
++... ++......-. .++.+....
T Consensus 290 ~~~~l~g~~laedivd~~Evl~~~~~~Itee~le~i~~~gi~~i~vl~~~~~~~~~~i~~t~~~d~~~~~~~~~t~~~~~ 369 (2890)
T PRK09603 290 PMDILLNRHLAEPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFSADSESLKLLKQTEKIDD 369 (2890)
T ss_pred chhhhcceeeeeeccCccceeeccCChhcHHHHHHHHHcCCceEEEEeecccccccccccccccccccchhhhhcccccc
Confidence 00000 0000000000 001000000
Q ss_pred ------------ccccchhhHHHHHHHHHhccCC----CCC-CCCcchhhHh-------------hHHHHHHHHHHHhhc
Q 046830 301 ------------VGVTREKMIKYAKEILQKEMLP----HVG-TGDFCETKKA-------------YYFGHIIHRLLLCAL 350 (518)
Q Consensus 301 ------------~~~~~~~~~~~~~~il~~~~l~----hl~-~~~~~~~~K~-------------~~L~~mi~kLl~~~~ 350 (518)
..+......+.++.++++.||- .+| .++...++|. .-+...+++|+.+..
T Consensus 370 ~~eeAl~~iyr~lrpgep~~~e~A~~l~~~lFFn~~rYdLg~vGR~klN~kL~l~~~~~~~~Lt~~Dil~~i~~li~l~~ 449 (2890)
T PRK09603 370 ENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKN 449 (2890)
T ss_pred chHHHHHHHHhccCCCCCCcHHHHHHHHHHHhcCcccccccccchhhhHhhhCCCCCCcccEecchhHHHHHHHHHHHHh
Confidence 0000112234577777776653 121 2223334443 135579999999999
Q ss_pred CCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCCCC
Q 046830 351 GRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGN 430 (518)
Q Consensus 351 g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~ 430 (518)
|....||+|||+||||+++|+||++||+.+|.++.+.+++++.....+...+++..++++++++..+++||+|
T Consensus 450 g~~~~DDiDhL~NRRvr~vGELl~~qfr~gl~rler~irerm~~~~~~~~~~~p~~lin~k~i~~~ikeFFgs------- 522 (2890)
T PRK09603 450 NQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMG------- 522 (2890)
T ss_pred CCCCCCcchhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChhhhhccHHHHHHHHHHhcc-------
Confidence 9999999999999999999999999999999999999999997643344567888999999999999999998
Q ss_pred CCCccccceeeccccCccccccccc------CCCCCC------ccccCCCCcccccccCCCCCccccccccccceEEEec
Q 046830 431 AAGTRAGVSQVLNCLTYASTFTYYL------SWKLAK------PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498 (518)
Q Consensus 431 ~~~~~sG~sq~ldr~N~l~~lSh~R------~gk~t~------vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is~ 498 (518)
+++||+|||+||||+|+|+| ||++++ +|++||||||||||||||||+|||||++||++|+|..
T Consensus 523 -----sqLSQfmDQtNpLseltHKRRlSaLGPGGlsr~ra~fevRdVH~shYGRiCPIETPEG~NiGLI~SLa~~a~in~ 597 (2890)
T PRK09603 523 -----GQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVND 597 (2890)
T ss_pred -----CchhhhhcccChhhhhhhcccccccCCCCccccccCCcccccCcccccccCCCCCCCCCcccchhhhhhheeccc
Confidence 47999999999999999999 888874 9999999999999999999999999999999999843
No 14
>PF04563 RNA_pol_Rpb2_1: RNA polymerase beta subunit; InterPro: IPR007644 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the protrusion domain []. The other lobe, RNA polymerase Rpb2, domain 2, is nested within this domain.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H ....
Probab=100.00 E-value=1.5e-45 Score=354.91 Aligned_cols=143 Identities=48% Similarity=0.727 Sum_probs=119.5
Q ss_pred chhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCCcccccCHHHHHhcCCCcceeE
Q 046830 33 GLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPL 112 (518)
Q Consensus 33 ~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~~~~~l~P~ecR~r~~TYs~~l 112 (518)
||++|||+|||||+++||++++++.+||..... +....++|++++|++|.+.+.++..++++|+|||++++||+|++
T Consensus 1 ~Lv~~qi~SFn~Fl~~gl~~i~~~~~~i~~~~~---~~~~~l~~~~~~i~~P~~~~~~~~~~~l~P~ecR~r~~TYs~~l 77 (203)
T PF04563_consen 1 GLVKHQIDSFNYFLNNGLKEILKEFPPIEFESS---NNRISLKFENIRIGKPTYSESDGRERPLYPRECRLRGLTYSAPL 77 (203)
T ss_dssp TTTHHHHHHHHHHHCTSSHHHHSCSSSCEECCC---STTEEEEEEEEEEESESSEHTTSCEEE--HHHHHHTT-B-EEEE
T ss_pred CchHHHHHHHHHHHHCCCHHHhccCCceEecCC---cceEEEEeeEEEEeeeeeccccccccCCCHHHHHhcCCCCCCcc
Confidence 689999999999999999999999999987532 34678899999999999998778899999999999999999999
Q ss_pred EEEEEEEEeec------CcccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEEeCceeEEEEeeec
Q 046830 113 YVDVTKRVIKK------GHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKM 178 (518)
Q Consensus 113 ~v~v~~~~~~~------~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFIING~ErVii~q~~~ 178 (518)
+|++++.+.+. ....|+|||||+|++|||++++++|++..||||.|+||||||||+||||++|+.+
T Consensus 78 ~v~i~~~~~~~~~~~~~~v~iG~iPiMv~S~~C~L~~~~~~~l~~~~E~~~d~GGYFIInG~EkVi~~q~~~ 149 (203)
T PF04563_consen 78 YVDIELTVNNKKEIKEQEVFIGKIPIMVRSKRCNLNGLSPKELVQLGECPNDPGGYFIINGSEKVIRMQIMR 149 (203)
T ss_dssp EEEEEEEESSTTEEEESEEEEEEEE-BTTTTTSGGGT--HHHHHHTTS-TT---SSEEETTEEEEE-EEEEE
T ss_pred ceEEEEEeeccceEEeeEEEEeeCCeEeecceeeCCCCCHHHHHHcCCCCcCCCCEEEECCChhheehhhhh
Confidence 99999987654 1355799999999999999999999999999999999999999999999999995
No 15
>PF04565 RNA_pol_Rpb2_3: RNA polymerase Rpb2, domain 3; InterPro: IPR007645 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 3, is also known as the fork domain and is proximal to catalytic site [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H 1IW7_M 2O5J_C 2CW0_M ....
Probab=99.93 E-value=5.4e-27 Score=185.37 Aligned_cols=58 Identities=53% Similarity=0.796 Sum_probs=49.8
Q ss_pred eeccccCccccccccc----------CCCCCCccccCCCCcccccccCCCCCccccccccccceEEEe
Q 046830 440 QVLNCLTYASTFTYYL----------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497 (518)
Q Consensus 440 q~ldr~N~l~~lSh~R----------~gk~t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is 497 (518)
|++||+|++++|||+| .++.+++|+|||||||||||||||||++|||++|||++|.|+
T Consensus 1 Q~l~r~N~l~~ls~~Rri~~~~~~~~~~~~~~~R~lh~s~~G~iCPveTPEG~~~GLv~~La~~a~I~ 68 (68)
T PF04565_consen 1 QYLDRTNPLSELSHLRRINRLGPLSKESKSTEPRQLHPSQYGRICPVETPEGENCGLVKNLALMARIT 68 (68)
T ss_dssp EE--TSSHHHHHHHHTEEESCSSTSSSSSSSTTTSTTGGGTTTBSSSSS-SSTSTTTEEEBBTT-EE-
T ss_pred CCcccccHHHHHHHHHhcccccccchhhcccccccccccceeEEeecccCCCccEeehheeeeeEEeC
Confidence 8999999999999999 235578999999999999999999999999999999999985
No 16
>PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain []. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, a region known as dispensable region 1 (DRI).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 2Y0S_R 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C ....
Probab=99.81 E-value=2.5e-20 Score=176.72 Aligned_cols=170 Identities=35% Similarity=0.450 Sum_probs=104.5
Q ss_pred CceEEEeecCCCc--eeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHhcCCCCH
Q 046830 181 NHVYVFKKRQPNK--YAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTAD 258 (518)
Q Consensus 181 n~~~~~~~~~~~~--~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrALg~~sd 258 (518)
|++|+.++.+.+. ..+.....+.++.| +.+..+ +..+.+.....+.+||+++||||||++||
T Consensus 3 n~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~~~~~~~~IPi~ilLrALG~~sd 66 (190)
T PF04561_consen 3 NGIYVEKDKDGNKIIRSVRSDIISSRGSW--------HYLEKD--------KKIIIFSRPKKKFKIPIVILLRALGIESD 66 (190)
T ss_dssp SSEEEEE-SSSSSCSSCEEEEECCSSSEE--------EEEECE--------TTTEEEEETTSSSEEEHHHHHHHTT--ST
T ss_pred CEEEEEEccCCCCeeEEEEeecCCCcceE--------EEEecC--------CcEEEEEEcCcccccceEEeehhhcCcCc
Confidence 5677776655543 35556555544433 444431 23344445456779999999999999999
Q ss_pred HHHHHHhhhcCCcHHHHHHhhhhHHHHhcccccc----eeeecCccccccchhhHHHHHHHH---------HhccCC-CC
Q 046830 259 EDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEIL---------QKEMLP-HV 324 (518)
Q Consensus 259 ~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~~~~~----~ig~~~~~~~~~~~~~~~~~~~il---------~~~~l~-hl 324 (518)
+||++.|++...+......+...........+++ |+|+.+.. ...+....+.+++++ .++.++ |+
T Consensus 67 ~eI~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~~~al~~i~~~~~~-~~~~~~~~~~~~~~l~~~y~l~~i~r~~l~~hl 145 (190)
T PF04561_consen 67 KEIIELICYSEEDFEDIEELMLSELEEEEIYTQEQALEYIGKKFRF-RQGKPPKVEEARNFLQKRYDLGFIGRYKLNKHL 145 (190)
T ss_dssp CHHHHHHCCCSTCHSCSTTTHHHHCCCTSSCSCHHHHHHHHHCCHS-SSSCHCCHCHHHHHHTTCSSTCCCHHHCCHTTT
T ss_pred ccccceeecccccccccccccccccccccccccccceeEeccceee-ecccccchhhhhcccccccccccccccceeeee
Confidence 9999999863222111111111111112233332 88873221 112233344566665 467777 99
Q ss_pred CCCCcchhh--HhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEc
Q 046830 325 GTGDFCETK--KAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLD 367 (518)
Q Consensus 325 ~~~~~~~~~--K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~ 367 (518)
+......+. |+.+|++|+++|+.++.|.+.+||+|||+||||+
T Consensus 146 ~~~~~~~~~~~k~~~l~~m~~~ll~~~~g~~~~Dd~D~l~NkRv~ 190 (190)
T PF04561_consen 146 GSDEPNENDRLKAEDLGLMIRKLLKLANGECEPDDRDHLGNKRVR 190 (190)
T ss_dssp TSSSSSSSSSCHHHHHHHHHHHHHHHHTTSS-S-STTSCCCEEEE
T ss_pred eeeecccccccchhhHHHHHHHHHHHhcCCCCCCCccccCCcCCc
Confidence 987653444 9999999999999999999999999999999995
No 17
>KOG0215 consensus RNA polymerase III, second largest subunit [Transcription]
Probab=97.43 E-value=6.6e-06 Score=90.25 Aligned_cols=415 Identities=11% Similarity=-0.016 Sum_probs=203.4
Q ss_pred HHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCCcccccCHH
Q 046830 20 EAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLK 99 (518)
Q Consensus 20 ~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~~~~~l~P~ 99 (518)
+.|--.++..+..++.+.||.+++-++..-.. ..||.++.+... ++..+.=.|+-| |.....-...+.+.|.
T Consensus 99 dirvg~Ps~~~~~~~~~~~i~p~ecrlrd~ty-----sa~i~vdieytr-g~~~~~~~~v~i--grmpimlrs~rcvl~~ 170 (1153)
T KOG0215|consen 99 DIRVGKPSIEEGNNVTNDNITPHECRLRDMTY-----SAPIYVDIEYTR-GRQIIAKRDVII--GRMPIMLRSSKCVLRG 170 (1153)
T ss_pred eeeccCcchhhccccccccCCchheeehhhhc-----ccceeEEEEEec-CcceEEeccccc--ccchhhhhccccccCC
Confidence 34555556666678888899999998876432 234443322211 111111123333 3322211234556666
Q ss_pred HHHhcCCCc-ceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEEeCceeEEEEeeec
Q 046830 100 AARLRNLTY-SAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKM 178 (518)
Q Consensus 100 ecR~r~~TY-s~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFIING~ErVii~q~~~ 178 (518)
+|+....-| .+|+-.- .+. ...|.-|||+.+.-|....+..++ -+.|+++.+.++||+..+++.+|+.+...
T Consensus 171 ~~e~~~a~~~ecpldpg-gyf-----iv~G~ekViLiqeqlsknrii~~~-~k~~~~~~svtsst~e~kskt~v~~k~~k 243 (1153)
T KOG0215|consen 171 KDEEELARLNECPLDPG-GYF-----IVKGTEKVILIQEQLSKNRIIVEE-DKKGNLQASVTSSTHERKSKTYVTTKKGK 243 (1153)
T ss_pred ccHHHHHHhccCCCCCC-cee-----EeccceeEEEehhhhhccCeeecc-ccCCccccccccceeeecceEEEEeccce
Confidence 666554433 2332211 111 123567999999999999987763 48999999999999999999999999875
Q ss_pred ccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceE---EEE-ecccc-----ccchhhhH
Q 046830 179 STNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYI---HAT-LPYIR-----TEIPIIIL 249 (518)
Q Consensus 179 s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i---~~~-~~~~~-----~~IPl~il 249 (518)
.+++...+.++-+ +.|....-+ ... +..+ ... -.|.. -+.|+.+-
T Consensus 244 ~ylk~~~~~d~ip------iviv~ka~g-----------~~s---------d~ei~~~vg~~~~y~~~~~~s~ee~~~~~ 297 (1153)
T KOG0215|consen 244 YYLKHNSFTDDIP------IVIVLKAMG-----------LES---------DQEIVQLVGGDSKYQDIFAPSLEECVSLG 297 (1153)
T ss_pred eeeehhhhhccCC------EEEEEeecc-----------ccc---------hHHHHHHhhcchHHHHhhccchhhhhhhh
Confidence 5554444333221 112111111 000 0000 000 00011 12222222
Q ss_pred HHhcCCCCHHHHHHHhhhc---------CCcHHHHHHhhhhHHHHhccc----ccc--eeeecCccccccchhhHHHHHH
Q 046830 250 FRALGFTADEDILEHICYD---------FQDTQMMELLRPSLEEAFFIQ----NQQ--YIGKRGATVGVTREKMIKYAKE 314 (518)
Q Consensus 250 lrALg~~sd~eI~~~i~~~---------~~~~~~~~~L~~~~~~~~~~~----~~~--~ig~~~~~~~~~~~~~~~~~~~ 314 (518)
+. +.++-++.+... ..+.++.++|....-...... ... |+|-+ .+.
T Consensus 298 v~-----tqqqal~y~~~kvk~~~~t~~~~~~e~~~~l~~~~lahv~v~~~~~r~K~~yi~~m--------------~rr 358 (1153)
T KOG0215|consen 298 VY-----TQQQALEYIGSKVKVKRGTTPTKDEEALEVLSTTVLAHVPVPDLNFRMKAIYIGLM--------------VRR 358 (1153)
T ss_pred hH-----HHHHHHHHhhheEEeccCCCCCchHHHHHHHHhhheeceeccCCCCcceeehHHHH--------------HHH
Confidence 22 222222222111 011222222221110000000 000 11111 111
Q ss_pred HHHhccCCCCCCCCcchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHH--HH-HHHH
Q 046830 315 ILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLT--GD-VRSY 391 (518)
Q Consensus 315 il~~~~l~hl~~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~--~~-~~~~ 391 (518)
++.-.+ |....++.+.-+-..|-.|.+ |+.+..+.---++.+.|++.+-...+.....++-..++.+. ++ +-..
T Consensus 359 ~~~a~l--~~~~~ddrd~~gnkrlelagq-llsllfeD~fk~~n~e~k~~~dk~l~k~~ra~~fD~~~~~n~~~~~it~~ 435 (1153)
T KOG0215|consen 359 VIQAML--NKLAMDDRDYVGNKRLELAGQ-LLSLLFEDLFKRFNSELKKNIDKILKKPIRAQEFDALKHLNVRANMITSG 435 (1153)
T ss_pred HHHHHh--CcccccchhhhccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHH
Confidence 111111 111111111111223333443 44444444445677778888777788777777777777764 11 1122
Q ss_pred HHhhhcCCCCCcHHHh-hhhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccc-cccc-------CCCCCCc
Q 046830 392 VQKCVDNGKDVNLQFA-IKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTF-TYYL-------SWKLAKP 462 (518)
Q Consensus 392 l~~~~~~~~~~~~~~~-i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~l-Sh~R-------~gk~t~v 462 (518)
+.+++..+. .++... +....+|..+ +-.|++|.-......++++.+......|-+-. |..+ |-+-.-.
T Consensus 436 l~ra~stgn-w~iKrfrmer~gvt~Vl--srlSyisaLgmmtri~s~fektrkvsgprSlq~sqwgmlcp~dtpegeacg 512 (1153)
T KOG0215|consen 436 LERAISTGN-WSIKRFRMERAGVTQVL--SRLSYISALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACG 512 (1153)
T ss_pred HHHHhhcCc-hHHHHhhhhhccceeee--hhhhhhhhhhhheehhhhheeehhccCccccChhhcccccCCCCCCccccc
Confidence 333322211 111110 0011122211 12345554433334477888887777665544 3444 4455567
Q ss_pred cccCCCCcccccccCCCCCccccccccccceEEEecCC
Q 046830 463 RQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGS 500 (518)
Q Consensus 463 R~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is~~~ 500 (518)
+-..++.|+-|||-++|++--|++.+..+...+++.+.
T Consensus 513 lvknlalmthittd~ee~pi~~~~~k~gv~di~~v~~~ 550 (1153)
T KOG0215|consen 513 LVKNLALMTHITTDSEEKPILKLCYKLGVEDIHVVSGR 550 (1153)
T ss_pred cccchHHHhcccCCCCcchhHHHHHHhcceeeeeeccc
Confidence 88899999999999999999999999999988886653
No 18
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=70.34 E-value=2.9 Score=36.43 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=13.8
Q ss_pred HHhCCccCCCCceEEEe
Q 046830 150 TELGECPYDEGGYFIIN 166 (518)
Q Consensus 150 i~~gE~p~d~GGYFIIN 166 (518)
....-+.+||+|||||.
T Consensus 7 lS~R~i~LDp~GYfiI~ 23 (119)
T PF14251_consen 7 LSQRFIDLDPAGYFIIY 23 (119)
T ss_pred hhcCccccCCCccEEEE
Confidence 35566788999999997
Done!