Query 046830
Match_columns 518
No_of_seqs 122 out of 1261
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 2E-117 6E-122 1020.3 13.9 502 14-518 10-553 (1210)
2 1twf_B DNA-directed RNA polyme 100.0 2E-112 6E-117 989.0 34.3 499 14-517 23-566 (1224)
3 4ayb_B DNA-directed RNA polyme 100.0 2E-106 7E-111 942.5 33.9 481 11-517 3-500 (1131)
4 2a6h_C DNA-directed RNA polyme 100.0 7.5E-82 2.6E-86 719.8 17.3 404 19-498 3-463 (1119)
5 3lu0_C DNA-directed RNA polyme 100.0 1.9E-76 6.6E-81 669.5 9.6 423 14-497 7-582 (1342)
6 3mlq_A DNA-directed RNA polyme 100.0 1.1E-29 3.8E-34 237.3 9.1 121 33-184 2-133 (188)
7 3lti_A DNA-directed RNA polyme 98.4 4.1E-07 1.4E-11 90.1 8.0 73 177-266 3-78 (296)
8 3mlq_A DNA-directed RNA polyme 97.8 1E-05 3.4E-10 75.4 4.0 67 361-441 121-187 (188)
9 3mjh_B Early endosome antigen 23.7 21 0.00071 23.4 0.4 9 468-476 2-10 (34)
10 1axh_A Atracotoxin-HVI, ACTX-H 9.1 1.1E+02 0.0036 20.0 0.8 15 475-489 2-16 (37)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-117 Score=1020.27 Aligned_cols=502 Identities=59% Similarity=0.987 Sum_probs=447.2
Q ss_pred cchhHHHHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCC-------CCCceEEEEEEEEecCcc
Q 046830 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQH-------NPGQQSDFAEIYLSKPMM 86 (518)
Q Consensus 14 ~~~~~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~-------~~~~~i~f~~~~i~~P~~ 86 (518)
+++++++.|.++++||+.++||+|||+|||+|+++||++++++.++|+++.+.++ ...+.++|++++|++|.+
T Consensus 10 ~~~~~ed~w~li~aff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~ 89 (1210)
T 3h0g_B 10 ETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTM 89 (1210)
T ss_dssp CCCCHHHHHHHHHHHHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCC
T ss_pred ccCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCce
Confidence 4588999999999999999999999999999999999999999999987653221 234678999999999999
Q ss_pred cCCCCcccccCHHHHHhcCCCcceeEEEEEEEEEeec----------------------CcccceeeeeeeecccccCCC
Q 046830 87 TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKK----------------------GHDGEEVPIMLRSSYCTLYQN 144 (518)
Q Consensus 87 ~~~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~----------------------~~~~~~iPIMv~S~~C~L~~~ 144 (518)
.+.++..++|||+|||+|++||+|||+|+|++.+.+. ....|+|||||||++|||+++
T Consensus 90 ~e~d~~~~~l~P~EcRlR~lTYsapl~Vdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C~L~g~ 169 (1210)
T 3h0g_B 90 TEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGV 169 (1210)
T ss_dssp BCTTSCBCCCCTTTTTTTCCCCEEEEEEEEEC---------------------CCSSCCCEEEEEEECCSSSTTSSSSSC
T ss_pred ecCCCcccccCHHHHHhcCCccceeEEEEEEEEEcCccccccccccccccccccccccceEEEecCCEEeCCCcccCCCC
Confidence 9988889999999999999999999999999876531 124578999999999999999
Q ss_pred CHHHHHHhCCccCCCCceEEEeCceeEEEEeeecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCC
Q 046830 145 SQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSA 224 (518)
Q Consensus 145 ~~~e~i~~gE~p~d~GGYFIING~ErVii~q~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~ 224 (518)
+++|++.+||||+|+||||||||+|||||+|+++|+|+|+++++++++++.|.|+|||++++.++.++.+++++..+.+.
T Consensus 170 s~~eL~~~gEcp~D~GGYFIING~EKVII~qerla~N~~iv~~~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~~~~~~ 249 (1210)
T 3h0g_B 170 SDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE 249 (1210)
T ss_dssp CHHHHHHTTCCTTCCCCCBCGGGSCBCCCBCBCCCCSCCCCCCCCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCCCCCTT
T ss_pred CHHHHHhcCCCCCCCCCEEEEeCEEEEEEechhhccceEEEEeecCCCCceEEEEEEEEecCCccceeEEEEEEEecccc
Confidence 99999999999999999999999999999999999999999988888888999999999998765555556666542111
Q ss_pred CCCCCCceEEEEeccccccchhhhHHHhcCCCCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhcccccc----eeeecCcc
Q 046830 225 KGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGAT 300 (518)
Q Consensus 225 ~~~~~~~~i~~~~~~~~~~IPl~illrALg~~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~~~~~----~ig~~~~~ 300 (518)
..++.+.+++++++.+||++++|||||.+||+||++.|+++..|..+.++|+.+++++..+++++ |||++++.
T Consensus 250 ---~~~~~i~~~~~~~~~~IPi~ivlkALg~~sD~EI~~~I~~~~~d~~~~~~l~~slee~~~i~tq~~aL~yIG~r~~~ 326 (1210)
T 3h0g_B 250 ---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGST 326 (1210)
T ss_dssp ---SCSCCCCCCCTTSCSCCCSHHHHTTTTCCSTTHHHHHHCCSSCCHHHHHTHHHHHHTTSSCCSSHHHHHTTCCCSSS
T ss_pred ---CCCceEEEEEeccccCCcHHHHHHHcCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhccc
Confidence 12578899999999999999999999999999999999988888899999999999987667764 99999986
Q ss_pred ccccchhhHHHHHHHHHhccCCCCCCCCcchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHH
Q 046830 301 VGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTL 380 (518)
Q Consensus 301 ~~~~~~~~~~~~~~il~~~~l~hl~~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~ 380 (518)
....+++++++|+++|++++|||++....++.+|+.||+||++||+.++.|.+.+||+|||+||||+++|+||+.+||+.
T Consensus 327 ~~~~~~~~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~Ll~~lfr~~ 406 (1210)
T 3h0g_B 327 TGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRML 406 (1210)
T ss_dssp CCCCHHHHHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHHHHHHHHHH
Confidence 55567788899999999999999998877777999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCCCCC-CCccccceeeccccCccccccccc----
Q 046830 381 FRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNA-AGTRAGVSQVLNCLTYASTFTYYL---- 455 (518)
Q Consensus 381 l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~-~~~~sG~sq~ldr~N~l~~lSh~R---- 455 (518)
|+++++.+++.+++.+++++.+++..++++..||++|++|||||||+..+. .++++|+||+|+|+||+|+|||||
T Consensus 407 ~~~~~~~i~~~l~k~~~~~~~~~~~~~i~~~~It~~l~~~laTGNW~~~kk~~~~~sGvsqvl~R~n~~s~lShlRrv~~ 486 (1210)
T 3h0g_B 407 FRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486 (1210)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCCTTSSCSTTTSHHHHHHHSSSCSSTTSSCCSCCCCSCCBCCCSSHHHHHHHTTBBCC
T ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHhcchhhhHHHHHHHhhcCCcccccccccCcCCEEEEcccCCHHHHHHHHHhccC
Confidence 999999999999998877778888888898899999999999999997664 468999999999999999999999
Q ss_pred ----CCCCCCccccCCCCcccccccCCCCCccccccccccceEEEecCCChhhHHHHHHHcCCcccC
Q 046830 456 ----SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENFE 518 (518)
Q Consensus 456 ----~gk~t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is~~~~~~~i~~~l~~~g~~~~~ 518 (518)
+||+++||+||||||||+||+|||||++|||+||||++|.||++++..+|.++|.++||++++
T Consensus 487 p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~pI~~~l~~~gme~le 553 (1210)
T 3h0g_B 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLE 553 (1210)
T ss_dssp SCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSSHHHHHHHSSSCCCCS
T ss_pred chhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcHHHHHHHHHhCCcchh
Confidence 689999999999999999999999999999999999999999999999999999999998763
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=1.8e-112 Score=989.02 Aligned_cols=499 Identities=55% Similarity=0.908 Sum_probs=425.1
Q ss_pred cchhHHHHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCC-------CCceEEEEEEEEecCcc
Q 046830 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN-------PGQQSDFAEIYLSKPMM 86 (518)
Q Consensus 14 ~~~~~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~-------~~~~i~f~~~~i~~P~~ 86 (518)
..+++++.|.++++||+.++|++|||+|||||+++||++++++++||+++.+..+. ..+.++|.+++|++|.+
T Consensus 23 ~~~~~~d~w~li~~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~ 102 (1224)
T 1twf_B 23 APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMV 102 (1224)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEE
T ss_pred CccCHHHHHHhHHHHHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCce
Confidence 44688999999999999999999999999999999999999999999864322111 13678899999999999
Q ss_pred cCCCCcccccCHHHHHhcCCCcceeEEEEEEEEEe--e----------------------cCcccceeeeeeeecccccC
Q 046830 87 TESDGETATLFLKAARLRNLTYSAPLYVDVTKRVI--K----------------------KGHDGEEVPIMLRSSYCTLY 142 (518)
Q Consensus 87 ~~~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~--~----------------------~~~~~~~iPIMv~S~~C~L~ 142 (518)
.+.++..++|||+|||+|++||+|||+|++.+.+. . .+...|+|||||||++|||+
T Consensus 103 ~e~~~~~~~l~P~EcRlR~lTYsapl~v~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlrS~~C~L~ 182 (1224)
T 1twf_B 103 NESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLS 182 (1224)
T ss_dssp CCSSSCCEECCHHHHHHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTSTTSGGG
T ss_pred eccCCccccCCHHHHhhcCCccceeEEEEEEEEEEeCCcccccccccccccccccccccceeeEeCCCCeEeccCcccCC
Confidence 98888889999999999999999999999943321 1 02346799999999999999
Q ss_pred CCCHHHHHHhCCccCCCCceEEEeCceeEEEEeeecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecC
Q 046830 143 QNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRT 222 (518)
Q Consensus 143 ~~~~~e~i~~gE~p~d~GGYFIING~ErVii~q~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~ 222 (518)
+++++|++.+||||+|+||||||||+|||||+|+++|||++|++++++++++.|+++|||+..++......+++++..+.
T Consensus 183 ~~s~~el~~~gEcp~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~~~~~~~~~~~~~irsv~~~~~~~~~~~~l~~~~~~ 262 (1224)
T 1twf_B 183 EATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRE 262 (1224)
T ss_dssp TCCHHHHHHTTCCTTCCCCSEEETTEEEEECEEEEECSSCCEEEECCTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCS
T ss_pred CCCHHHHHhhccCccCCCCEEEEeCcEEEEEEeeeccCCeEEEEeccCCCcceEEEEEEEEeccCCcceeEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999888888889999999988876556677788887421
Q ss_pred CCCCCCCCceEEEEeccccccchhhhHHHhcCCCCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhcccccc----eeeec-
Q 046830 223 SAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKR- 297 (518)
Q Consensus 223 ~~~~~~~~~~i~~~~~~~~~~IPl~illrALg~~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~~~~~----~ig~~- 297 (518)
+ . .++.+++++++++++||+++||||||++||+||++.++++..|..+.++|..+++++...++++ |||++
T Consensus 263 ~-~---~~~~i~vr~~~~k~~IPi~illkALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~e~~~~~t~~~AL~yIg~r~ 338 (1224)
T 1twf_B 263 G-S---SARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRG 338 (1224)
T ss_dssp S-C---SSCCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHTTTCCSHHHHHHHHHHTT
T ss_pred c-C---CCCEEEEEEecccccccHHHHHHHhcCCCHHHHHHHhcccCCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhh
Confidence 1 0 1578999999988899999999999999999999999987778888899999998875555544 99999
Q ss_pred CccccccchhhHHHHHHHHHhccCCCCCCCCcchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHH
Q 046830 298 GATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLF 377 (518)
Q Consensus 298 ~~~~~~~~~~~~~~~~~il~~~~l~hl~~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f 377 (518)
++. ...+..+++.|+++|++++|||+|........|++||++|++||+.++.|.+.+||+|||+||||+++|+||+.+|
T Consensus 339 ~~~-g~~~~~~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G~Ll~~lf 417 (1224)
T 1twf_B 339 TAL-GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF 417 (1224)
T ss_dssp SCT-TSCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHHHHHH
T ss_pred ccC-CCCCccHHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhhHHHHHHH
Confidence 654 3345677899999999999999998755557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCCCCC-CCccccceeeccccCccccccccc-
Q 046830 378 RTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNA-AGTRAGVSQVLNCLTYASTFTYYL- 455 (518)
Q Consensus 378 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~-~~~~sG~sq~ldr~N~l~~lSh~R- 455 (518)
|.+|+++++.+++.+++.+++.+.+++..++++++||++|++|||||||+.++. .++++||||+|||+||+|+|||+|
T Consensus 418 r~~~~r~~~~i~~~l~~~~~~~~~~~~~~~i~~~~It~~lk~~~aTGNw~~~k~~~~~~sGvSQvldr~n~ls~LSH~RR 497 (1224)
T 1twf_B 418 KTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 497 (1224)
T ss_dssp HHHHHHHHHHHHHHHHSCCC--------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhhcccchhhcchhheeeccccccccccccccceeEeecccchhhhhhhhhc
Confidence 999999999999999988767777888889999999999999999999998774 467999999999999999999999
Q ss_pred -------CCCCCCccccCCCCcccccccCCCCCccccccccccceEEEecCCChhhHHHHHHHcCCccc
Q 046830 456 -------SWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517 (518)
Q Consensus 456 -------~gk~t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is~~~~~~~i~~~l~~~g~~~~ 517 (518)
.+|.++||+||||||||+||+|||||++||||||||++|.|+++.+..+|.++|.++||+++
T Consensus 498 i~~~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~pi~~~l~~~G~~~l 566 (1224)
T 1twf_B 498 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPL 566 (1224)
T ss_dssp EECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEG
T ss_pred ccccccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHHHHHHHHHHcCCcce
Confidence 67889999999999999999999999999999999999999999999999999999999864
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=2.2e-106 Score=942.49 Aligned_cols=481 Identities=38% Similarity=0.603 Sum_probs=427.8
Q ss_pred ccccchhHHHHHHhhhcccCCcchhHHHHHHHHHHHHhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCC
Q 046830 11 DEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESD 90 (518)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~ 90 (518)
+++++++.+|.|.+|++||+.++||+|||+|||||+++||++++++++||+.. .++..++|.+++|++|.+.+.+
T Consensus 3 ~~~~~~~~~d~w~~i~~~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~-----~~~~~l~f~~~~l~~P~~~e~d 77 (1131)
T 4ayb_B 3 ELSSNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTE-----IPGLKVRLGKIRIGKPRVRESD 77 (1131)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCS-----STTCEEEEEEEEECCSEEEETT
T ss_pred cccccCChhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeec-----CCCEEEEEEEEEEeCCeeecCC
Confidence 35688999999999999999999999999999999999999999999999753 3568899999999999999888
Q ss_pred CcccccCHHHHHhcCCCcceeEEEEEEEEEeecC-----cccceeeeeeeecccccCCCCHHHHHHhCCccCCCCceEEE
Q 046830 91 GETATLFLKAARLRNLTYSAPLYVDVTKRVIKKG-----HDGEEVPIMLRSSYCTLYQNSQKALTELGECPYDEGGYFII 165 (518)
Q Consensus 91 ~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~-----~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~d~GGYFII 165 (518)
+..+++||.|||+|++||+|||+|++.+...+.+ ...|+|||||+|++|||++++++|++..||||+|+||||||
T Consensus 78 ~~~~~l~P~EcR~r~~TYsapl~v~v~~~~~~~~~~~~~v~lG~iPiM~~S~~C~L~~~s~~el~~~gEc~~D~GGyFII 157 (1131)
T 4ayb_B 78 RGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIV 157 (1131)
T ss_dssp TEEEECCHHHHHHHTCCCEEEEEEEEEEEETTEECCCEEEEEEEEECCTTSTTSGGGGCCHHHHHHHTCCTTCCCCCEEE
T ss_pred CCcCccCHHHHHhcCCCccceEEEEEEEEECCcEEEEEEEEEEECCEEeCCCcccCCCCCHHHHHhcCCCcCCCCcEEEe
Confidence 8889999999999999999999999988654322 24578999999999999999999999999999999999999
Q ss_pred eCceeEEEEeeecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccch
Q 046830 166 NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIP 245 (518)
Q Consensus 166 NG~ErVii~q~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IP 245 (518)
||+|||||+|+++|||++|+.+.+..++..|.++++|.+++|. ..+.+++.. ++.+++++++++++||
T Consensus 158 NG~ERVIv~Q~~~spn~~~~~~~~~~~~~~~~a~ii~~~~~~~---~~~~i~~~~---------~~~~~v~~~~~~~~iP 225 (1131)
T 4ayb_B 158 NGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYR---VPVTIERLK---------DGTFHVSFPAVPGKIP 225 (1131)
T ss_dssp TTEEEEECEEEEECCSSCEEEECCTTCSEEEEEECEEECSSCE---EECCEEEET---------TTCCEECCSSSCCCEE
T ss_pred CCEEEEEEEeeccCCCeEEEEeccCCCcEEEEEEEEECCCCce---eeEEEEEeC---------CCEEEEEEcCcCceee
Confidence 9999999999999999999877666667789999999999882 223466663 5788999998888999
Q ss_pred hhhHHHhcCCCCHHHHHHHhhhcCCcHHHHHHhhhhHHHHhcccccc----eeeecCccccccchhhHHHHHHHHHhccC
Q 046830 246 IIILFRALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEML 321 (518)
Q Consensus 246 l~illrALg~~sd~eI~~~i~~~~~~~~~~~~L~~~~~~~~~~~~~~----~ig~~~~~~~~~~~~~~~~~~~il~~~~l 321 (518)
+++||||||+.||+||++.+.. +..+.+.+..+++++..+.+++ |+|++++.. ..+.+..+.++++|++++|
T Consensus 226 i~illrALG~~sD~eI~~~i~~---~~~~~~~l~~~~~~~~~i~~~~~al~~i~~r~~~~-~~~~~~~~~a~~il~~~~l 301 (1131)
T 4ayb_B 226 FVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQASSIANVDDALDFIGSRVAIG-QKRENRIEKAQQIIDKYFL 301 (1131)
T ss_dssp HHHHHHHHTCCSHHHHHHHHCS---CHHHHTTTHHHHHHHTTTCCSSHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCcchhhHHHHhcc---cHHHHHHHHHHHHHhcccccHHHHHHHHhhhhhcC-CCCchhHHHHHHHHHHhhc
Confidence 9999999999999999999875 3555666667777776666654 888887643 3445667889999999999
Q ss_pred CCCCCCCcchhhHhhHHHHHHHHHHHhhcCCCCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 046830 322 PHVGTGDFCETKKAYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKD 401 (518)
Q Consensus 322 ~hl~~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~ 401 (518)
||++...+++..|+.+|++|+++|+.+..|.+.+||+|||+||||+++|+||++|||.+|+++++.+++++.+...+.+.
T Consensus 302 ~hl~~~~~~~~~K~~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~~~fr~~l~r~~r~ir~~~~~~~~~~~~ 381 (1131)
T 4ayb_B 302 PHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRK 381 (1131)
T ss_dssp TTSCSSTTSHHHHHHHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCSC
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHHHHHHHHHHHHHHHhhhhcccchhcccc
Confidence 99998877778899999999999999999999999999999999999999999999999999999999999887666677
Q ss_pred CcHHHhhhhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccccc--------CCCCCCccccCCCCcccc
Q 046830 402 VNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYL--------SWKLAKPRQLHNSQWGMM 473 (518)
Q Consensus 402 ~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh~R--------~gk~t~vR~lhps~~G~i 473 (518)
+++..+++++.||++|++||+||||.. +++||||+|||+||||+|||+| +++.++||+|||||||||
T Consensus 382 ~~~~~li~~~~it~~i~~~~aTGn~~~-----~~sglSQ~mdq~NpLs~lsH~RRlsagl~rera~~evRdlHpShyGri 456 (1131)
T 4ayb_B 382 LALKALVRPDIVTERIRHALATGNWVG-----GRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRM 456 (1131)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHTTBCSS-----SCBCCEEECCCSSHHHHHHHHTEEEECSCSSSCCHHHHSCCGGGTTTB
T ss_pred cchhhhcCCchhhhhhHHHHhhccccc-----CCCceEEEeccCCHHHHHHhhhhhcCCcccccccccccccCHhhcccc
Confidence 899999999999999999999999974 4699999999999999999999 456778999999999999
Q ss_pred cccCCCCCccccccccccceEEEecCCChhhHHHHHHHcCCccc
Q 046830 474 CPAETPEGQACGLVKNLALMVYITIGSAAYPILEFLEEWGTENF 517 (518)
Q Consensus 474 CPveTPEG~~cGLi~~La~~a~is~~~~~~~i~~~l~~~g~~~~ 517 (518)
||||||||+|||||+|||++|+|+.+.+...+.+.+.++|+.++
T Consensus 457 CPIETPEG~niGLI~sLA~~a~I~~g~~e~~i~~~l~~~g~~~~ 500 (1131)
T 4ayb_B 457 CPFETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPV 500 (1131)
T ss_dssp CSSCCCSSTTBTTEEEBBSSCEECCCCCHHHHHHHHHHTTCEEH
T ss_pred ccccCCCCccccccccceeeEEEecCCCCcceeeehhhcCceee
Confidence 99999999999999999999999988888999999999998753
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=7.5e-82 Score=719.84 Aligned_cols=404 Identities=22% Similarity=0.295 Sum_probs=325.7
Q ss_pred HHHHHhhhcccCCcchhHHHHHHHHHHH----------HhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccC
Q 046830 19 EEAWAVISAYFEEKGLVRQQLDSFDEFN----------QNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTE 88 (518)
Q Consensus 19 ~~~~~~i~~~f~~~~lv~~qi~SFn~Fi----------~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~ 88 (518)
+.+|++++.+|+.|+|+++|++|||||+ ++||++++++++||+... +.++...++|.++++++|.+
T Consensus 3 r~~~~~~~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~--~~~~~~~l~f~~~~l~~P~~-- 78 (1119)
T 2a6h_C 3 IKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEED--KGKGGLVLDFLEYRLGEPPF-- 78 (1119)
T ss_dssp EEECCCCCCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECC--SSSCCEEEEECCCCBCCCSS--
T ss_pred ceecccccccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccC--CCCCeEEEEEEEEEEcCCCC--
Confidence 5689999999999999999999999999 999999999999998621 13456789999999999975
Q ss_pred CCCcccccCHHHHHhcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeC
Q 046830 89 SDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIING 167 (518)
Q Consensus 89 ~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING 167 (518)
+|.|||+|++||+|||+|++++.+.+.+. + .++.+.+|+.|. ++||||||||
T Consensus 79 --------~p~Ecr~r~lTYsapL~V~v~l~~~~~~~----i---------------k~~~V~iG~iPiMt~gGyFIING 131 (1119)
T 2a6h_C 79 --------PQDECREKDLTYQAPLYARLQLIHKDTGL----I---------------KEDEVFLGHIPLMTEDGSFIING 131 (1119)
T ss_dssp --------CHHHHHHTTCCCEEEBCCCEEECCSSSCC----E---------------ECCCCCCCEEECCCTTSCCCSSS
T ss_pred --------CHHHHHhcCCcccceEEEEEEEEECCCce----e---------------eeeEEEecCCCeECCCcEEEEeC
Confidence 79999999999999999999986532110 0 011234444444 5799999999
Q ss_pred ceeEEEEeeecccCceEEEeecCCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhh
Q 046830 168 SEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPII 247 (518)
Q Consensus 168 ~ErVii~q~~~s~n~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~ 247 (518)
+|||||+|++||||.+|....+..++..|+++++|.++.| +++..+ .++.++++++. ++||++
T Consensus 132 ~ERVIVsQ~~rspgv~~~~~~~~~g~~~ysa~ii~~rgs~--------l~~~~d-------~~~~i~vri~r--~kIPi~ 194 (1119)
T 2a6h_C 132 ADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRGPW--------IDLEVE-------PNGVVSMKVNK--RKFPLV 194 (1119)
T ss_dssp SCEEECEEEEECSCEEEECCSSCSSCCEEEECCCSSSSCC--------EEEEEE-------TTTEEEEESSS--SEECHH
T ss_pred eEEEEEEEEecCCcEEEEeeccCCCceEEEEEEEeccCce--------EEEEEc-------CCCEEEEEEeC--cceeHH
Confidence 9999999999999988865443445568999999998877 666642 25789999985 899999
Q ss_pred hHHHhcCCCCHHHHHHHhhhcCCcHHHHHHhhh------hHHHHhcccccceeeecCccccccchhhHHHHHHHHHhcc-
Q 046830 248 ILFRALGFTADEDILEHICYDFQDTQMMELLRP------SLEEAFFIQNQQYIGKRGATVGVTREKMIKYAKEILQKEM- 320 (518)
Q Consensus 248 illrALg~~sd~eI~~~i~~~~~~~~~~~~L~~------~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~il~~~~- 320 (518)
+||||||+ ||+||++.++.+ ..+.+.|.. +.++|. .||+++.++... ...+.|+++|.+.|
T Consensus 195 ilLrALG~-sD~eIl~~~~~~---~~~~~tl~~d~~~~~~~~eAl-----~~i~~~lr~g~~---~~~e~a~~~l~~~ff 262 (1119)
T 2a6h_C 195 LLLRVLGY-DQETLARELGAY---GELVQGLMDESVFAMRPEEAL-----IRLFTLLRPGDP---PKRDKAVAYVYGLIA 262 (1119)
T ss_dssp HHHHHHTC-CHHHHHHHHHSS---CTTHHHHSSCHHHHTCHHHHH-----HHHHHHSSSCCC---SCCSSHHHHHTSSSS
T ss_pred HHHHHHCC-CHHHHHHHHccC---HHHHHHHHhhhcccCCHHHHH-----HHHHHHhcCCCC---CcHHHHHHHHHHhhC
Confidence 99999999 999999999754 222333322 123332 266666654221 12245888888877
Q ss_pred ------CCCCCCCCcchhhHh-------------------hHHHHHHHHHHHhhcCCC--CCCCCCcccceEEccccchh
Q 046830 321 ------LPHVGTGDFCETKKA-------------------YYFGHIIHRLLLCALGRR--AEDDRDHYGNKRLDLAGPLL 373 (518)
Q Consensus 321 ------l~hl~~~~~~~~~K~-------------------~~L~~mi~kLl~~~~g~~--~~Dd~D~l~nkRv~~~G~Ll 373 (518)
|+|+|... .++|. ..+++|+++|+.+..|.+ .+||+|||+||||+++|+||
T Consensus 263 ~~~rydl~~vGr~~--ln~kl~l~~~~~~~~~~~~~~l~~~di~~mi~~Ll~l~~G~~~~~~DD~DhlgNkRv~~~GeLl 340 (1119)
T 2a6h_C 263 DPRRYDLGEAGRYK--AEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELM 340 (1119)
T ss_dssp SSCCSCTTTSSHHH--HHTTSCSCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHHTSCSSCCCCCTTSTTTEEEECHHHHH
T ss_pred Ccccccchhcchhh--hhhhhccCCccccccccccccccHHHHHHHHHHHHHhhcCCCCCCCcCcchhhceEehhhhHHH
Confidence 56776321 11111 347889999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCCCCCCCccccceeeccccCccccccc
Q 046830 374 GGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTY 453 (518)
Q Consensus 374 ~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq~ldr~N~l~~lSh 453 (518)
+++||.+|+++.+.+++++++. +.+.+++..++++++||++|++||+|| ||||+|||+||+|+|||
T Consensus 341 ~~~fr~~l~r~~~~i~~~~~~~--~~~~~~~~~~i~~~~It~~lk~ff~tg------------~lSQ~Ldq~N~ls~LsH 406 (1119)
T 2a6h_C 341 TDQFRVGLARLARGVRERMLMG--SEDSLTPAKLVNSRPLEAAIREFFSRS------------QLSQFKDETNPLSSLRH 406 (1119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS--CSSCCSSTTTCCSHHHHHHHHHHHHTC------------SSEEECCCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh--cccccchHHhhccchhHHHHHHHhhcc------------CccccccccchHhhhhh
Confidence 9999999999999999999764 334677788889899999999999997 58999999999999999
Q ss_pred cc------CCCC------CCccccCCCCcccccccCCCCCccccccccccceEEEec
Q 046830 454 YL------SWKL------AKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITI 498 (518)
Q Consensus 454 ~R------~gk~------t~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is~ 498 (518)
+| ||++ ++||+|||||||||||+|||||+|||||||||++|+|+.
T Consensus 407 ~RRisslgpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~~ 463 (1119)
T 2a6h_C 407 KRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDE 463 (1119)
T ss_dssp HHEEESSSSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEECS
T ss_pred hheecccCCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeecc
Confidence 99 5444 469999999999999999999999999999999999973
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=1.9e-76 Score=669.45 Aligned_cols=423 Identities=22% Similarity=0.313 Sum_probs=326.0
Q ss_pred cchhHHHHHHhhhcccCCcchhHHHHHHHHHHHH------hHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCccc
Q 046830 14 EETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQ------NTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMT 87 (518)
Q Consensus 14 ~~~~~~~~~~~i~~~f~~~~lv~~qi~SFn~Fi~------~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~ 87 (518)
+....+.+|++++.-+..|+|+++|++||+||++ .||++++++++||+. ++++..++|.++++++|.++
T Consensus 7 ~~~~~R~~f~k~~~~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~d-----~~~~~~Lef~~y~l~~Pk~~ 81 (1342)
T 3lu0_C 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS-----YSGNSELQYVSYRLGEPVFD 81 (1342)
T ss_dssp -CCCCCCCSSCCCCSSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCEE-----TTTTEECCEEEECCCCCSCC
T ss_pred CCceeEeccccCCcCCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEEC-----CCCCEEEEEeeEEeCCCCCC
Confidence 3445677899999999999999999999999997 899999999999984 45667888999999999886
Q ss_pred CCCCcccccCHHHHHhcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEe
Q 046830 88 ESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIIN 166 (518)
Q Consensus 88 ~~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIIN 166 (518)
+ .||++|++||++||+|++.+.+.+.+...+. ... ..+|.|++|+.|+ +.+||||||
T Consensus 82 ~----------~Ec~~r~lTYsapL~v~~rL~~~~~d~~~~~-----------~~e-ikeq~Vy~GdiPLMT~~GtFIIN 139 (1342)
T 3lu0_C 82 V----------QECQIRGVTYSAPLRVKLRLVIYEREAPEGT-----------VKD-IKEQEVYMGEIPLMTDNGTFVIN 139 (1342)
T ss_dssp S----------STTTSSCCCCCCCCBEEECCEECCCSSCCCC-----------CCC-CCBCCCBCCCCCCCCSSSCEESS
T ss_pred H----------HHHHhcCCCcccceEEEEEEEEecccccccc-----------ccc-eEEEEEEEecCceECCCcEEEEc
Confidence 5 5899999999999999999976543221100 001 1345689999999 999999999
Q ss_pred CceeEEEEeeecccCceEEEeec---CCCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEecccccc
Q 046830 167 GSEKVLIAQEKMSTNHVYVFKKR---QPNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTE 243 (518)
Q Consensus 167 G~ErVii~q~~~s~n~~~~~~~~---~~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 243 (518)
|+|||||+|+.||||.+|..... ..++..|+|+|+|.||+| |.+..+ .++.++++++ ++++
T Consensus 140 G~ERVIVsQl~RSPGVyf~~~~~k~~~~gk~lysa~IIP~RGsW--------lefe~D-------~kd~l~vrId-r~rK 203 (1342)
T 3lu0_C 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW--------LDFEFD-------PKDNLFVRID-RRRK 203 (1342)
T ss_dssp SSEEECCEEEECCSSCCCCSCCSCSSSCCCSCCEEEECCSSSCC--------EEEEEE-------TTTEEEEEES-SCSC
T ss_pred CceEEEEEeecccCceeEeccccccCCCCceEEEEEEecCCCcc--------EEEEEc-------CCCeEEEEec-CCCc
Confidence 99999999999999976643221 134668999999999999 555543 2578999999 5789
Q ss_pred chhhhHHHhcCCCCHHHHHHHhhhc--CC----------------------c----------------HHHHHHhh----
Q 046830 244 IPIIILFRALGFTADEDILEHICYD--FQ----------------------D----------------TQMMELLR---- 279 (518)
Q Consensus 244 IPl~illrALg~~sd~eI~~~i~~~--~~----------------------~----------------~~~~~~L~---- 279 (518)
+|+++||||||+ +++||++.+... +. | .+....+.
T Consensus 204 ipvt~lLrALG~-~~~~Il~~f~~~~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~~it~~~~~~l~~~g~ 282 (1342)
T 3lu0_C 204 LPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 (1342)
T ss_dssp EETTHHHHTTTC-CHHHHHTTTSCEEEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSSEECSHHHHHHHHTTC
T ss_pred eeeehhHhHhCC-CHHHHHHHhcccceEEeccCceeeecchhhhcccccccchhccccceecccccccHHHHHHHHhccC
Confidence 999999999999 688999887421 00 0 00000000
Q ss_pred ----------------------------------------hhHHHHhc--c---c-----ccc-----------------
Q 046830 280 ----------------------------------------PSLEEAFF--I---Q-----NQQ----------------- 292 (518)
Q Consensus 280 ----------------------------------------~~~~~~~~--~---~-----~~~----------------- 292 (518)
..+.++-. + . ...
T Consensus 283 ~~i~v~~~~l~g~~la~divd~~tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i~~tl~~d~~~~~~eA 362 (1342)
T 3lu0_C 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 (1342)
T ss_dssp CCEECCSHHHHTSEECSCEECTTTCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSGGGTTTTCCCCSSHHH
T ss_pred cccccCHHHhhcchhhheeeecCCCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHHHHHHhhccCCCHHHH
Confidence 00000000 0 0 000
Q ss_pred --eeeecCccccccchhhHHHHHHHHHhccC-------CCCCCC-----------CcchhhHhhHHHHHHHHHHHhhcCC
Q 046830 293 --YIGKRGATVGVTREKMIKYAKEILQKEML-------PHVGTG-----------DFCETKKAYYFGHIIHRLLLCALGR 352 (518)
Q Consensus 293 --~ig~~~~~~~~~~~~~~~~~~~il~~~~l-------~hl~~~-----------~~~~~~K~~~L~~mi~kLl~~~~g~ 352 (518)
+|.++.|+..+ ...+.|+.++++.|| +|+|.- .....-+...++.++++|+.+..|.
T Consensus 363 l~~iyr~lrpgep---~t~e~a~~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~DIi~~i~~Li~l~~g~ 439 (1342)
T 3lu0_C 363 LVEIYRMMRPGEP---PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 (1342)
T ss_dssp HHHHHHHHSCSSC---CCTTHHHHHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCCC---CCHHHHHHHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHHHHHHHHHHHHHhhCC
Confidence 11111111110 123467777776665 677621 1111223456888999999999999
Q ss_pred CCCCCCCcccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCCCCCC
Q 046830 353 RAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAA 432 (518)
Q Consensus 353 ~~~Dd~D~l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~ 432 (518)
...||+|||+||||+++|+||++|||.+|.++.+.+++++++. ....+++..+++++++++++++||++
T Consensus 440 ~~~DDiDHLgNrRvr~vGeLl~~qfr~~l~r~~r~i~~~~~~~--~~~~~~~~~lin~~~i~~~~k~ffg~--------- 508 (1342)
T 3lu0_C 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGS--------- 508 (1342)
T ss_dssp SCCCCSSSTTTSEEECHHHHHHHTHHHHHHHHHHHHTTHHHHC--CSSCCSSTTTCCSSTTHHHHTTTTTT---------
T ss_pred CCCcchhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccCCHHHHhccchHHHHHHHHhCc---------
Confidence 9999999999999999999999999999999999999999764 34567788899999999999999976
Q ss_pred CccccceeeccccCccccccccc------CCCCC------CccccCCCCcccccccCCCCCccccccccccceEEEe
Q 046830 433 GTRAGVSQVLNCLTYASTFTYYL------SWKLA------KPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT 497 (518)
Q Consensus 433 ~~~sG~sq~ldr~N~l~~lSh~R------~gk~t------~vR~lhps~~G~iCPveTPEG~~cGLi~~La~~a~is 497 (518)
+||||+|||+|||++|||+| ||+++ +||+|||||||||||+|||||+|||||+|||++|.|.
T Consensus 509 ---s~lSQ~lDqtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI~sLA~~a~in 582 (1342)
T 3lu0_C 509 ---SQLSQFMVQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 (1342)
T ss_dssp ---CSSCEECCCSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSCCBCCSSCCBC
T ss_pred ---cccceeecCCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeeecchhheEEec
Confidence 69999999999999999999 67765 5999999999999999999999999999999999985
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.96 E-value=1.1e-29 Score=237.33 Aligned_cols=121 Identities=27% Similarity=0.395 Sum_probs=98.0
Q ss_pred chhHHHHHHHHHHH----------HhHHHHHHhhcCCeeecCCCCCCCCceEEEEEEEEecCcccCCCCcccccCHHHHH
Q 046830 33 GLVRQQLDSFDEFN----------QNTMQEIVDESADIEIRPESQHNPGQQSDFAEIYLSKPMMTESDGETATLFLKAAR 102 (518)
Q Consensus 33 ~lv~~qi~SFn~Fi----------~~gl~~i~~~~~pi~~~~~~~~~~~~~i~f~~~~i~~P~~~~~~~~~~~l~P~ecR 102 (518)
+|+++|++|||||+ ++||++++++++||+...+ .++...++|.++++++|. ++|.|||
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~~--~~~~~~L~f~~~~l~~P~----------~~p~Ecr 69 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDK--GKGGLVLDFLEYRIGDPP----------FSQDECR 69 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECCS--SSCCEEEEEEEEEECCCS----------SCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeeccC--CCCeEEEEEEEEEecCCC----------CCHHHHH
Confidence 68999999999999 8999999999999986421 124678999999999996 4899999
Q ss_pred hcCCCcceeEEEEEEEEEeecCcccceeeeeeeecccccCCCCHHHHHHhCCccC-CCCceEEEeCceeEEEEeeecccC
Q 046830 103 LRNLTYSAPLYVDVTKRVIKKGHDGEEVPIMLRSSYCTLYQNSQKALTELGECPY-DEGGYFIINGSEKVLIAQEKMSTN 181 (518)
Q Consensus 103 ~r~~TYs~~l~v~v~~~~~~~~~~~~~iPIMv~S~~C~L~~~~~~e~i~~gE~p~-d~GGYFIING~ErVii~q~~~s~n 181 (518)
+|++||+|||+|++++.....+.. .++.+.+|+.|. ++||||||||+|||||+|++|++|
T Consensus 70 ~r~lTYsapl~v~v~l~~~~~~~i-------------------~~~~v~iG~iPlMt~gGyFIING~ERVIVsQe~r~~g 130 (188)
T 3mlq_A 70 EKDLTYQAPLYARLQLIHKDTGLI-------------------KEDEVFLGHLPLMTEDGSFIINGADRVIVSQGGRTVG 130 (188)
T ss_dssp HTTCCCEEEEEEEEEEEETTTCCE-------------------EEEEEEEEEEECCCTTSCEEETTEEEECCCCSSSCHH
T ss_pred hcCCCcceeEEEEEEEEECCCceE-------------------EEEEEEEcccCEECCCCEEEECCEEEEEEEeecccCC
Confidence 999999999999999864321110 112244455555 599999999999999999999999
Q ss_pred ceE
Q 046830 182 HVY 184 (518)
Q Consensus 182 ~~~ 184 (518)
.++
T Consensus 131 ell 133 (188)
T 3mlq_A 131 ELM 133 (188)
T ss_dssp HHH
T ss_pred eee
Confidence 664
No 7
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.41 E-value=4.1e-07 Score=90.12 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=55.9
Q ss_pred ecccCceEEEeecC---CCceeEEEEEEeecCCCCCCCceEEEEEEecCCCCCCCCCceEEEEeccccccchhhhHHHhc
Q 046830 177 KMSTNHVYVFKKRQ---PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRAL 253 (518)
Q Consensus 177 ~~s~n~~~~~~~~~---~~~~~~~~~i~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~IPl~illrAL 253 (518)
-+|||.+|.....+ .++..|+|+|+|.||+| |++..+ .++.++++++ +++++|+++|||||
T Consensus 3 ~~SPGv~f~~~~~~ths~g~~~y~~~iIP~RGsW--------lefe~d-------~~d~~~vrId-r~rK~p~t~lLrAl 66 (296)
T 3lti_A 3 PMSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW--------LDFEFD-------PKDNLFVRID-RRRKLPATIILRAL 66 (296)
T ss_dssp -CCCEEEEEEC---------CCEEEEEECSBSCC--------EEEEEC-------TTSCEEEEET-TCCCEETHHHHHHT
T ss_pred CCCCEEEEecccCCcCCCCcEEEEEEEecCCCce--------EEEEEc-------CCCeEEEEEc-CcccchHHHHHHHc
Confidence 37899887654221 34678999999999999 666653 2468899998 67899999999999
Q ss_pred CCCCHHHHHHHhh
Q 046830 254 GFTADEDILEHIC 266 (518)
Q Consensus 254 g~~sd~eI~~~i~ 266 (518)
|+ +++||++.+.
T Consensus 67 G~-~~edIL~~Fy 78 (296)
T 3lti_A 67 NY-TTEQILDLFF 78 (296)
T ss_dssp TC-CHHHHHHHHC
T ss_pred CC-ChHHHHHhcc
Confidence 99 7899999884
No 8
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=97.82 E-value=1e-05 Score=75.44 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=59.5
Q ss_pred ccceEEccccchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHhhhhcchhHHHHHHhccCCCCCCCCCCcccccee
Q 046830 361 YGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVNLQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQ 440 (518)
Q Consensus 361 l~nkRv~~~G~Ll~~~f~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~it~~i~~~f~TGnw~~~~~~~~~sG~sq 440 (518)
+-+|+.+++|+||+.+++.+|.+++|.+|+++... ....+++++++|.++++..|+.||+| ++|||
T Consensus 121 IVsQe~r~~gell~~q~r~gl~r~ek~~~e~~~~~--~~~~~~~~~l~n~kp~~~~ik~ff~s------------s~Lsq 186 (188)
T 3mlq_A 121 IVSQGGRTVGELMADQFRVGLARLARGVRERMVMG--SPDTLTPAKLVNSRPLEAALREFFSR------------SQLSQ 186 (188)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHS--CGGGCCHHHHCCCHHHHHHHHHHHHT------------CEECC
T ss_pred EEEeecccCCeeeEEehhhHHHHHHHHHHhhhccc--cccccCcccchhhHHHHHHHHHhhcc------------ccccc
Confidence 55788899999999999999999999999999764 34568899999999999999999999 57888
Q ss_pred e
Q 046830 441 V 441 (518)
Q Consensus 441 ~ 441 (518)
|
T Consensus 187 f 187 (188)
T 3mlq_A 187 F 187 (188)
T ss_dssp C
T ss_pred C
Confidence 6
No 9
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.74 E-value=21 Score=23.35 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=7.0
Q ss_pred CCccccccc
Q 046830 468 SQWGMMCPA 476 (518)
Q Consensus 468 s~~G~iCPv 476 (518)
|.=||+||+
T Consensus 2 ~~EGFiCP~ 10 (34)
T 3mjh_B 2 SSEGFICPQ 10 (34)
T ss_dssp CSEEEECTT
T ss_pred CCcccCCcH
Confidence 455999997
No 10
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=9.09 E-value=1.1e+02 Score=20.03 Aligned_cols=15 Identities=40% Similarity=0.771 Sum_probs=11.1
Q ss_pred ccCCCCCcccccccc
Q 046830 475 PAETPEGQACGLVKN 489 (518)
Q Consensus 475 PveTPEG~~cGLi~~ 489 (518)
|+=||-|+||---.+
T Consensus 2 ~~C~psgQPCpyne~ 16 (37)
T 1axh_A 2 PTCIPSGQPCPYNEN 16 (37)
T ss_dssp CCSBCTTSBCSSGGG
T ss_pred CccccCCCcCCCccc
Confidence 567899999965444
Done!