RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 046830
(518 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1207
Score = 442 bits (1137), Expect = e-144
Identities = 279/553 (50%), Positives = 370/553 (66%), Gaps = 48/553 (8%)
Query: 10 EDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADIEIRPESQHN 69
EDE T E++WAVISA+F EKGLV QQLDSF++F T+Q+I+ E + + + +QH
Sbjct: 2 EDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHT 61
Query: 70 PGQQSD-------FAEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIK 122
+ F +IY++KPM+ ESDG T L+ + ARLRNLTYS+ L+VDV KR +
Sbjct: 62 TESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYE 121
Query: 123 KGHDGE------------------------EVPIMLRSSYCTLYQNSQKALTELGECPYD 158
+PIMLRS C L + ++ L +L ECP+D
Sbjct: 122 AIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFD 181
Query: 159 EGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVCSMAESQNRPPSTIFVPM 218
GGYFIINGSEKVLIAQE+ + N V VFKK P+ ++VAE+ S E +R ST+ V +
Sbjct: 182 MGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKL 241
Query: 219 LSRTSAKGGSSGQYIHATLPYIRTEIPIIILFRALGFTADEDILEHICYDFQDTQMMELL 278
+ GSS + I ATLPYI+ +IPI+I+FRALG D +ILEHICYD D QM+E+L
Sbjct: 242 YG----REGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 297
Query: 279 RPSLEEAFFIQNQQ----YIGKRGATVGVTREKMIKYAKEILQKEMLPHVGTGDFCETKK 334
+P +E+ F IQ+++ +IG+RG +G+ +EK I+YAK+ILQKE LPH+ + E++K
Sbjct: 298 KPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRK 357
Query: 335 AYYFGHIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQK 394
A++ G++I+RLLLCAL R+ +DDRDH+G KRLDLAGPLL LF+TLF+KLT D+ Y+Q+
Sbjct: 358 AFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQR 417
Query: 395 CVDNGKDVNLQFAIKAKTITGGLKYSLATGNWG-QGNAAGTRAGVSQVLNCLTYASTFT- 452
V+ D N++ AI AKTIT GLKY+LATGNWG Q A +RAGVSQVLN TY+ST +
Sbjct: 418 TVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 477
Query: 453 -------YYLSWKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITIGSAAYPI 505
KLAKPRQLHN+ WG++CPAETPEGQACGLVKNL+LM I++G+ PI
Sbjct: 478 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 537
Query: 506 LEFLEEWGTENFE 518
+ FL EWG E E
Sbjct: 538 ITFLSEWGMEPLE 550
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 231 bits (589), Expect = 1e-66
Identities = 92/536 (17%), Positives = 170/536 (31%), Gaps = 102/536 (19%)
Query: 25 ISAYFEEKGLVRQQLDSFDEFNQNTMQEIVDESADI-----EIRPESQHNPGQQS---DF 76
I L Q++S+ Q + E+ I E P + + G+ DF
Sbjct: 9 IREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDF 68
Query: 77 AEIYLSKPMMTESDGETATLFLKAARLRNLTYSAPLYVDVTKRVIKKGHDGE------EV 130
E L +P + + R ++LTY APLY + G E +
Sbjct: 69 LEYRLGEPPFPQDE----------CREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHI 118
Query: 131 PIMLRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQ 190
P+M G FIING+++V+++Q S + +
Sbjct: 119 PLMTED------------------------GSFIINGADRVIVSQIHRSPGVYFTPDPAR 154
Query: 191 PNKYAYVAEVCSMAESQNRPPSTIFVPMLSRTSAKGGSSGQYIHATLPYIRTEIPIIILF 250
P +Y R P G ++ + + P+++L
Sbjct: 155 PGRYIASIIPLP-----KRGPWIDLE-----VEPNG-------VVSMKVNKRKFPLVLLL 197
Query: 251 RALGFTADEDILEHICYDFQDTQMMELLRPSLEEAFFIQNQQ-----YIGKRGATVGVTR 305
R LG+ + E Y EL++ ++E+ F + R
Sbjct: 198 RVLGYDQETLARELGAYG-------ELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKR 250
Query: 306 EKMIKYAKEILQKEMLPHVG---------------------TGDFCETKKAYYFGHIIHR 344
+K + Y ++ +G + E K + + +
Sbjct: 251 DKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYL 310
Query: 345 LLLCA-LGRRAEDDRDHYGNKRLDLAGPLLGGLFRTLFRKLTGDVRSYVQKCVDNGKDVN 403
L A + DD DH GN+R+ G L+ FR +L VR + ++ +
Sbjct: 311 FALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSED--SLT 368
Query: 404 LQFAIKAKTITGGLKYSLATGNWGQGNAAGTRAGVSQVLNCLTYASTFTYYLSWKLAKPR 463
+ ++ + ++ + Q + ++ R
Sbjct: 369 PAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVR 428
Query: 464 QLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TIGSAAYPILEFLEEWGTENFE 518
+H + +G +CP ETPEG GL+ +LA + +G P + T+
Sbjct: 429 DVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVV 484
>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo
sapiens), alpha-chain [TaxId: 9606]}
Length = 112
Score = 27.9 bits (61), Expect = 1.3
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 442 LNCLTYASTFTYYLSWKLAKPRQLHNSQWGMMC 474
L C + T Y+ W P Q +
Sbjct: 18 LPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLT 50
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT
{Helicobacter pylori [TaxId: 210]}
Length = 349
Score = 28.8 bits (64), Expect = 1.6
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 134 LRSSYCTLYQNSQKALTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 193
LR + + PY + + +EK V + P K
Sbjct: 120 LRMPLYYDRLHHKAESVNDTTAPYKLKDNSLYALKKPSHCFKEKHPNLCAVVNDESDPLK 179
Query: 194 YAYVAEVCSMAESQNRPPSTIFVPMLSR 221
+ + V S + R F L+
Sbjct: 180 RGFASFVASNPNAPIR---NAFYDALNS 204
>d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase
{Bacillus circulans, different strains [TaxId: 1397]}
Length = 90
Score = 26.7 bits (59), Expect = 2.1
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 175 QEKMSTNHVYVFKKRQPNKYAYVA 198
QE+ N V +++++ + A VA
Sbjct: 4 QERWINNDVLIYERKFGSNVAVVA 27
>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus
musculus), beta-chain [TaxId: 10090]}
Length = 94
Score = 26.0 bits (56), Expect = 4.1
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 437 GVSQVLNCLTYASTFTYYLSWKLAKPRQLHNSQWGMMCPAETPE 480
G LNC TY+ + W + + + +
Sbjct: 1 GAIASLNC-TYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKED 43
>d1n6za_ d.263.1.1 (A:) Hypothetical protein Yml108w {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 105
Score = 25.3 bits (55), Expect = 7.9
Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 1 MMMEEERLEEDEEEETTQEEAWAVISAYFEEKGLVRQQLDSFDEFNQ 47
+++ E+ + ++E+E + + + +E ++ +D DE N
Sbjct: 10 LVLLEDDTKINKEDEKFLKGKPGKMHEFVDEL-ILPFNVDELDELNT 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,941,619
Number of extensions: 91724
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 10
Length of query: 518
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 429
Effective length of database: 1,185,626
Effective search space: 508633554
Effective search space used: 508633554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)