BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046831
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSV---IKDNP--ECLCSMISNKGSRRAEEAGINVAAA 90
LAPC+ Y+ G VP +CC+ +++V + P + C+ + A G+N A
Sbjct: 11 LAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLK---QLSASVPGVNPNNA 67
Query: 91 QELPGKCG 98
LPGKCG
Sbjct: 68 AALPGKCG 75
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 32.3 bits (72), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSVIKD-----NPECLCSMI-SNKGSRRAEEAGINVAA 89
LA C+ +L VP SCC +K+++ + +CS + + G+ R GIN
Sbjct: 10 LAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR----GINPNN 65
Query: 90 AQELPGKCGQRV 101
A+ LPGKCG +
Sbjct: 66 AEALPGKCGVNI 77
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSVI---KDNPE----CLCSMISNKGSRRAEEAGINVA 88
L+PCL YL G CC +K ++ P+ C C + S GS +N
Sbjct: 11 LSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNC-LKSAAGSITK----LNTN 65
Query: 89 AAQELPGKCGQRV 101
A LPGKCG +
Sbjct: 66 NAAALPGKCGVNI 78
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 36 LAPCLRYLNGSRDVPDS-CCDPLKSV-----IKDNPECLCSMISNKGSRRAEEAGINVAA 89
+APC+ Y G P + CC ++S+ + C+ + N A +G+N
Sbjct: 11 IAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAA---AGVSGLNAGN 67
Query: 90 AQELPGKCG 98
A +P KCG
Sbjct: 68 AASIPSKCG 76
>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 267
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 77 SRRAEEAGINVAAAQELPGKCGQRVNPLGCLRGSP 111
+RRAEE G+ AA++L Q V +G RGSP
Sbjct: 180 ARRAEEIGLITMAAEDLDAAIDQLVTDVG--RGSP 212
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 34 NRLAPCLRYLNGSRDVPDSCCDPLKSVIK-----DNPECLCSMISNKGSRRAEEAGINVA 88
+ LAPCL YL + + CC +K+++ ++ + C+ + S +GIN+
Sbjct: 9 SNLAPCLAYLRNTGPL-GRCCGGVKALVNSARTTEDRQIACTCLK---SAAGAISGINLG 64
Query: 89 AAQELPGKCGQRV 101
A LP CG +
Sbjct: 65 KAAGLPSTCGVNI 77
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 36 LAPCLRYLNGSRDVPDSCCDPLKSV-------IKDNPECLCSMISNKGSRRAEEAGINVA 88
+ PCL Y G +CC ++S+ C C + +G + G+N
Sbjct: 10 VGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK-----GLNAG 64
Query: 89 AAQELPGKCGQRV 101
A +P KCG V
Sbjct: 65 NAASIPSKCGVSV 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,839,292
Number of Sequences: 62578
Number of extensions: 134590
Number of successful extensions: 261
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 12
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)