Query 046831
Match_columns 148
No_of_seqs 124 out of 1048
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14368 LTP_2: Probable lipid 99.6 2.4E-17 5.3E-22 114.8 0.0 81 23-106 13-96 (96)
2 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 5.6E-14 1.2E-18 91.6 2.3 61 36-99 1-63 (63)
3 cd04660 nsLTP_like nsLTP_like: 99.4 2.2E-13 4.8E-18 92.1 3.4 65 34-106 6-73 (73)
4 cd01959 nsLTP2 nsLTP2: Non-spe 99.4 3.2E-13 6.9E-18 90.2 2.4 63 32-102 1-64 (66)
5 cd01960 nsLTP1 nsLTP1: Non-spe 99.3 5E-13 1.1E-17 93.1 3.2 69 31-103 2-80 (89)
6 smart00499 AAI Plant lipid tra 98.8 4.9E-09 1.1E-13 69.0 3.7 64 35-103 7-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.2 2.1E-08 4.5E-13 69.2 -4.9 66 35-103 14-87 (90)
8 PF14547 Hydrophob_seed: Hydro 89.8 0.16 3.4E-06 35.5 1.1 70 35-107 8-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 88.3 0.32 7E-06 34.0 1.8 64 35-104 10-82 (85)
10 PF07172 GRP: Glycine rich pro 74.7 3 6.6E-05 29.5 2.5 6 1-6 1-6 (95)
11 PF14981 FAM165: FAM165 family 24.8 38 0.00083 21.2 0.9 10 136-145 11-20 (51)
No 1
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.64 E-value=2.4e-17 Score=114.80 Aligned_cols=81 Identities=41% Similarity=0.823 Sum_probs=51.8
Q ss_pred ccccccccchhhchhcc---hhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCC
Q 046831 23 EGTWAQSTYCLNRLAPC---LRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQ 99 (148)
Q Consensus 23 ~~~~~~a~~C~~~L~pC---l~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv 99 (148)
........+|..+|.+| ..|++++.+|++.||+++|++.+.++.|+|+++++.. ...++||.+++..||++||+
T Consensus 13 ~~~~~~~~~c~~~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~---~~~~~in~~~a~~Lp~~Cg~ 89 (96)
T PF14368_consen 13 APAAACCCSCANSLLPCCPCLCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPG---APGFGINVTRALALPAACGV 89 (96)
T ss_dssp -----BTTB-HCCCCHH--HHHHHCC-----HHHHHHHCC----HCCHHHCCCC-CC---HCHHCCTCHHHHHHHHHCTS
T ss_pred ccCCCCcchhHHHHhccccchhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccc---cccCCcCHHHHHHHHHHcCC
Confidence 34445557788888888 7888866789999999999998888999999888753 13468999999999999999
Q ss_pred CCCCCCC
Q 046831 100 RVNPLGC 106 (148)
Q Consensus 100 ~~p~~~C 106 (148)
+.++..|
T Consensus 90 ~~~~~~C 96 (96)
T PF14368_consen 90 PVPPSKC 96 (96)
T ss_dssp S-S----
T ss_pred CCCCCCC
Confidence 9988555
No 2
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.43 E-value=5.6e-14 Score=91.58 Aligned_cols=61 Identities=46% Similarity=1.005 Sum_probs=51.9
Q ss_pred hhcchhhhcCCC-CCCccchhhhhhhcCCCCccccccccCcccccccccCC-CHHHHhhccccCCC
Q 046831 36 LAPCLRYLNGSR-DVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGI-NVAAAQELPGKCGQ 99 (148)
Q Consensus 36 L~pCl~yl~g~~-~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~i-n~~~a~~LP~~Cgv 99 (148)
|.||++|++|+. +|++.||++++++++.++.|+|+++++... +..++ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~---~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGA---SLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccc---cccCcccHHHHHhchHhcCC
Confidence 579999999874 788999999999998889999999887542 22345 79999999999996
No 3
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.39 E-value=2.2e-13 Score=92.07 Aligned_cols=65 Identities=31% Similarity=0.607 Sum_probs=52.0
Q ss_pred hchhcchhhhcCCC---CCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCCCCCC
Q 046831 34 NRLAPCLRYLNGSR---DVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVNPLGC 106 (148)
Q Consensus 34 ~~L~pCl~yl~g~~---~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p~~~C 106 (148)
..|.||++|+++++ .|+..||+++|+++ ..|+|.+++... ..+||.++|.+||++||+++|+.+|
T Consensus 6 ~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~---~~C~C~~~~~~~-----~~~i~~~~a~~Lp~~Cgv~~p~~~C 73 (73)
T cd04660 6 DLLAECQPYVTGPNPPPPPSRECCAALRRAD---LPCLCRYKTSLV-----LQIIDPDKAVYLPAKCGLPLPPSSC 73 (73)
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC---cCCEeeccCCCc-----ccccCHHHHHHHHHHcCCCCCCCCC
Confidence 46899999999765 47788999999853 459999766431 2259999999999999999987545
No 4
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.36 E-value=3.2e-13 Score=90.24 Aligned_cols=63 Identities=29% Similarity=0.646 Sum_probs=53.4
Q ss_pred hh-hchhcchhhhcCCCCCCccchhhhhhhcCCCCccccccccCcccccccccCCCHHHHhhccccCCCCCC
Q 046831 32 CL-NRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEAGINVAAAQELPGKCGQRVN 102 (148)
Q Consensus 32 C~-~~L~pCl~yl~g~~~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~~in~~~a~~LP~~Cgv~~p 102 (148)
|+ .+|.+|.+|++++..||..||+.+|+ +..|||.|++++.. +. .||.++|.+||++||+++|
T Consensus 1 c~~~~L~~C~~ai~~~~~Ps~~CC~~Lk~----~~~CLC~y~~~p~l---~~-~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 1 CNPTQLSPCLPAILGGSPPSAACCAKLKE----QQSCLCQYAKNPSL---KQ-YVNSPNARKVLAACGVPYP 64 (66)
T ss_pred CChhhcccCHHHHhCCCCCCHHHHHHHhc----CCCCeeeeecCccH---Hh-hcCcHHHHHHHHHcCCCCC
Confidence 44 57999999999877899999999998 34899999887642 23 3999999999999999986
No 5
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.35 E-value=5e-13 Score=93.10 Aligned_cols=69 Identities=33% Similarity=0.667 Sum_probs=53.0
Q ss_pred chh---hchhcchhhhcCCC-CCCccchhhhhhhcCC-----CCccccccccCccccccccc-CCCHHHHhhccccCCCC
Q 046831 31 YCL---NRLAPCLRYLNGSR-DVPDSCCDPLKSVIKD-----NPECLCSMISNKGSRRAEEA-GINVAAAQELPGKCGQR 100 (148)
Q Consensus 31 ~C~---~~L~pCl~yl~g~~-~Pp~~CC~~lk~l~~~-----~~~CLC~~l~~~~~~~~~~~-~in~~~a~~LP~~Cgv~ 100 (148)
+|. ..|.||++|++|+. .|++.||++++++++. +..|+|..+++.. ..+ +||.+++.+||++||++
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~----~~~~~i~~~~a~~LP~~C~v~ 77 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA----AGISGLNPGRAAGLPGKCGVS 77 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccc----cccCCCCHHHHHhChHhcccC
Confidence 466 46899999999875 7889999999999753 3345665555532 233 59999999999999999
Q ss_pred CCC
Q 046831 101 VNP 103 (148)
Q Consensus 101 ~p~ 103 (148)
.+.
T Consensus 78 ~~~ 80 (89)
T cd01960 78 IPY 80 (89)
T ss_pred CCC
Confidence 764
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.80 E-value=4.9e-09 Score=69.04 Aligned_cols=64 Identities=31% Similarity=0.663 Sum_probs=50.2
Q ss_pred chhcchhhhcCC--C-CCCccchhhhhhhcCCCCccccccccCccccccccc---CCCHHHHhhccccCCCCCCC
Q 046831 35 RLAPCLRYLNGS--R-DVPDSCCDPLKSVIKDNPECLCSMISNKGSRRAEEA---GINVAAAQELPGKCGQRVNP 103 (148)
Q Consensus 35 ~L~pCl~yl~g~--~-~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~~~~~---~in~~~a~~LP~~Cgv~~p~ 103 (148)
++.+|.+|+++. . .|+..||+++++++ +..|+|.+++.... ... .++..++..||+.||+..+.
T Consensus 7 ~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~---~~~~~~~~~~~~a~~lp~~C~~~~~~ 76 (79)
T smart00499 7 QLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVL---GILEIPGVNAQNAASLPSACGVPPPY 76 (79)
T ss_pred hHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccc---cccchhhhhHHHHHhhHHhcCCCCCC
Confidence 456999999876 3 67789999999985 67899997765422 111 25899999999999998774
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.25 E-value=2.1e-08 Score=69.18 Aligned_cols=66 Identities=33% Similarity=0.704 Sum_probs=51.2
Q ss_pred chhcchhhhcCCC-CCCccchhhhhhhcCCCCccccccccCccccc-------ccccCCCHHHHhhccccCCCCCCC
Q 046831 35 RLAPCLRYLNGSR-DVPDSCCDPLKSVIKDNPECLCSMISNKGSRR-------AEEAGINVAAAQELPGKCGQRVNP 103 (148)
Q Consensus 35 ~L~pCl~yl~g~~-~Pp~~CC~~lk~l~~~~~~CLC~~l~~~~~~~-------~~~~~in~~~a~~LP~~Cgv~~p~ 103 (148)
.+.+|.+|++++. .|+..||++|+++ ++.|+|..++...... ....+++..+|..||+.||++.+.
T Consensus 14 ~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~ 87 (90)
T PF00234_consen 14 RLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY 87 (90)
T ss_dssp HHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS
T ss_pred cccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 5899999999875 6788999999998 4799998776532100 001258899999999999999875
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=89.85 E-value=0.16 Score=35.53 Aligned_cols=70 Identities=23% Similarity=0.443 Sum_probs=43.9
Q ss_pred chhcchhhhc--C--CC-CCCccchhhhhhhcCCC-CccccccccCcccccccccCCCHH-HHhhccccCCCCCCCCC-C
Q 046831 35 RLAPCLRYLN--G--SR-DVPDSCCDPLKSVIKDN-PECLCSMISNKGSRRAEEAGINVA-AAQELPGKCGQRVNPLG-C 106 (148)
Q Consensus 35 ~L~pCl~yl~--g--~~-~Pp~~CC~~lk~l~~~~-~~CLC~~l~~~~~~~~~~~~in~~-~a~~LP~~Cgv~~p~~~-C 106 (148)
+|.-|.+.+. + .+ .+...||+-++.+.+.+ ..|||..++.... ...++|.+ ....|-..||-..|... |
T Consensus 8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vl---g~i~~~ipv~l~~lln~CGk~~p~gf~C 84 (85)
T PF14547_consen 8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVL---GLINVNIPVALNLLLNACGKTVPSGFTC 84 (85)
T ss_pred hhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcc---cccccccccHHHHHHHHhCCcCcCCCcC
Confidence 5677888771 1 12 34578999999998754 4799987764311 00123333 34466788998887653 6
Q ss_pred C
Q 046831 107 L 107 (148)
Q Consensus 107 ~ 107 (148)
+
T Consensus 85 ~ 85 (85)
T PF14547_consen 85 P 85 (85)
T ss_pred C
Confidence 4
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=88.27 E-value=0.32 Score=34.02 Aligned_cols=64 Identities=27% Similarity=0.526 Sum_probs=41.1
Q ss_pred chhcchhhhcCC----CC-CCccchhhhhhhcCC-CCccccccccCcccccccccCCC--HHH-HhhccccCCCCCCCC
Q 046831 35 RLAPCLRYLNGS----RD-VPDSCCDPLKSVIKD-NPECLCSMISNKGSRRAEEAGIN--VAA-AQELPGKCGQRVNPL 104 (148)
Q Consensus 35 ~L~pCl~yl~g~----~~-Pp~~CC~~lk~l~~~-~~~CLC~~l~~~~~~~~~~~~in--~~~-a~~LP~~Cgv~~p~~ 104 (148)
+|.-|..-+... +. |...||+-++.+.+- ...|+|..++.. .+||+ ..- ..-+-..||-..|++
T Consensus 10 kLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan------~lgi~~~~pv~l~llln~CGk~~P~g 82 (85)
T cd01958 10 KLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN------ILGISINIPVALSLLLNSCGRNVPPG 82 (85)
T ss_pred HhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc------ccCcccccChhHHHHHHHHcCcCCCC
Confidence 467777776321 23 447899999999875 457999877643 23443 332 334456798887765
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=74.67 E-value=3 Score=29.55 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=3.7
Q ss_pred CchhhH
Q 046831 1 MEMKLI 6 (148)
Q Consensus 1 M~~~~~ 6 (148)
|++|+.
T Consensus 1 MaSK~~ 6 (95)
T PF07172_consen 1 MASKAF 6 (95)
T ss_pred CchhHH
Confidence 785553
No 11
>PF14981 FAM165: FAM165 family
Probab=24.85 E-value=38 Score=21.20 Aligned_cols=10 Identities=80% Similarity=1.059 Sum_probs=8.2
Q ss_pred HHHhhhhhhh
Q 046831 136 YILASKTLIA 145 (148)
Q Consensus 136 ~~~~~~~~~~ 145 (148)
||+|.||+|-
T Consensus 11 YILaaKtlil 20 (51)
T PF14981_consen 11 YILAAKTLIL 20 (51)
T ss_pred HHHHHHHHHH
Confidence 8889999873
Done!