BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046832
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 21/181 (11%)
Query: 24 PLHVASAYGHVDFVKEII--NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
PLHVAS GH+ VK ++ P+++ N +P+H+A+ GHT V + LL+ + K+
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEML--SACPECIEDVTIQHDTALHLAIKNNQFEAI 139
+ + + TPLHCAA G +++ +L +A P T T LH+A + E +
Sbjct: 74 -NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL---ATTAGHTPLHIAAREGHVETV 129
Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATR--KKQRKELLLGHGTY--SSGRLELIAL 195
L +++E ++G T LH+A + K + ELLL + ++G+ L L
Sbjct: 130 LAL------LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 183
Query: 196 H 196
H
Sbjct: 184 H 184
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 14 VKLKALRKGNPLHVASAYGHVDFVKEII--NVRPDLAHEVNQDGFSPMHIASSIGHTGVV 71
V KA PLH A+ GH + VK ++ N P+LA G +P+HIA+ GH V
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLHIAAREGHVETV 129
Query: 72 RELLKVE-QKLCHQQGPEKNTPLHCAAIKGKVHVLSEML--SACPECIEDVTIQHDTALH 128
LL+ E + C + + TPLH AA GKV V +L A P + T LH
Sbjct: 130 LALLEKEASQACMTK--KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL---TPLH 184
Query: 129 LAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQ 174
+A+ +N + + +L+ G +N G T LH+A ++ Q
Sbjct: 185 VAVHHNNLDIVKLLLPR-GGSPHSPAWN-----GYTPLHIAAKQNQ 224
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 18/207 (8%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLHVA + ++D VK ++ R H +G++P+HIA+ V R LL+ +
Sbjct: 182 PLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-AN 239
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD-TALHLAIKNNQFEAITVL 142
+ + TPLH AA +G +++ +LS + ++ + T LHL + VL
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 143 VNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTYSSGRLEL--IALHQQ 198
+ K + + G T LH+A+ K + LL H + + +L LHQ
Sbjct: 298 I------KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351
Query: 199 RQLDSRHDFVEYFKFKKGRDSPGETRS 225
Q H + K G SP E S
Sbjct: 352 AQ--QGHTDIVTLLLKNGA-SPNEVSS 375
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKL 81
PLH+A+ GH + V +++ + + + N+ G +P+H+ + GH V L+K V
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITV 141
+ G TPLH A+ G + ++ +L + + + + LH A + + +T+
Sbjct: 307 TTRMG---YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY-SPLHQAAQQGHTDIVTL 362
Query: 142 LVNWIRGMKREEIFNMKDEQGNTVLHLATR 171
L +K N G T L +A R
Sbjct: 363 L------LKNGASPNEVSSDGTTPLAIAKR 386
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 23 NPLHVASAYGHVDFVKEII--NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
+PLH A+ GH D V ++ P+ EV+ DG +P+ IA +G+ V ++LKV
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPN---EVSSDGTTPLAIAKRLGYISVT-DVLKV 398
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ GH++ VK ++ D+ + +++G +P+H+A+ GH VV+ LL+ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-- 61
Query: 84 QQGPEKN--TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITV 141
+KN TPLH AA G + V+ +L A + + T LHLA +N E + +
Sbjct: 62 -NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 142 LV 143
L+
Sbjct: 120 LL 121
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN--TPLHCAAIKGKVHVLSEMLSA 111
+G +P+H+A+ GH VV+ LL+ + +KN TPLH AA G + V+ +L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 112 CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR 171
+ + T LHLA +N E + +L ++ N KD+ G T LHLA R
Sbjct: 58 GAD-VNAKDKNGRTPLHLAARNGHLEVVKLL------LEAGADVNAKDKNGRTPLHLAAR 110
Query: 172 KKQRK--ELLLGHGTY 185
+ +LLL G Y
Sbjct: 111 NGHLEVVKLLLEAGAY 126
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
PLH+A+ GH++ VK ++ D+ + +++G +P+H+A+ GH VV+ LL+
Sbjct: 71 PLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
LH A + GH + V+ ++ + + ++ + G+SP+HIA+S G +V+ LL K H
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALL---VKGAHV 99
Query: 85 QGPEKN--TPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHD-TALHLAIKNNQFEA 138
+N TPLH AA K + H ++ ML A P D +D TA+H A +
Sbjct: 100 NAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKM 154
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE 177
+ +L+ + + N++D +GNT LHLA +++ +E
Sbjct: 155 VHILLFY------KASTNIQDTEGNTPLHLACDEERVEE 187
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 19/129 (14%)
Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
+PLH+A++ G + VK ++ V+ + VNQ+G +P+H A+S + LL+
Sbjct: 75 SPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE------ 127
Query: 83 HQQGPEKN-----TPLHCAAIKGK---VHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
P+ T +H AA KG VH+L + I+D + +T LHLA
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHIL--LFYKASTNIQDT--EGNTPLHLACDEE 183
Query: 135 QFEAITVLV 143
+ E LV
Sbjct: 184 RVEEAKFLV 192
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKLC 82
LH A + GH + V+ ++ + + ++ + G+SP+HIA+S G +V+ LL +
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 83 HQQGPEKNTPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHDTALHLAIKNNQFEAI 139
+Q G TPLH AA K + H ++ ML A P+ + TA+H A + I
Sbjct: 104 NQNGC---TPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEA---TAMHRAAAKGNLKMI 156
Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE--LLLGHGT 184
+L+ + + N++D +GNT LHLA +++ +E LL+ G
Sbjct: 157 HILLYY------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
+PLH+A++ G + VK ++ + + VNQ+G +P+H A+S + LL+
Sbjct: 76 SPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 83 HQQGPEKNTPLHCAAIKGK---VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI 139
+ E T +H AA KG +H+L + I+D + +T LHLA + E
Sbjct: 135 AKDHYEA-TAMHRAAAKGNLKMIHIL--LYYKASTNIQDT--EGNTPLHLACDEERVEEA 189
Query: 140 TVLVN 144
+LV+
Sbjct: 190 KLLVS 194
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 21/167 (12%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKLC 82
LH A + GH + V+ ++ + + ++ + G+SP+HIA+S G +V+ LL +
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 83 HQQGPEKNTPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHDTALHLAIKNNQFEAI 139
+Q G TPLH AA K + H ++ ML A P+ + TA+H A + I
Sbjct: 103 NQNGC---TPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEA---TAMHRAAAKGNLKMI 155
Query: 140 TVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE--LLLGHGT 184
+L+ + + N++D +GNT LHLA +++ +E LL+ G
Sbjct: 156 HILLYY------KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
+PLH+A++ G + VK ++ + + VNQ+G +P+H A+S + LL+
Sbjct: 75 SPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 83 HQQGPEKNTPLHCAAIKGK---VHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI 139
+ E T +H AA KG +H+L + I+D + +T LHLA + E
Sbjct: 134 AKDHYEA-TAMHRAAAKGNLKMIHIL--LYYKASTNIQDT--EGNTPLHLACDEERVEEA 188
Query: 140 TVLVN 144
+LV+
Sbjct: 189 KLLVS 193
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
LH A + GH + V+ ++ + + ++ + G+SP+HIA+S G +V+ LL K H
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALL---VKGAHV 99
Query: 85 QGPEKN--TPLHCAAIKGKVHVLSEML---SACPECIEDVTIQHD-TALHLAIKNNQFEA 138
+N TPLH AA K + H ++ ML A P D +D TA+H A +
Sbjct: 100 NAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKM 154
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRKE 177
+ +L+ + + N++D +GNT LHLA +++ +E
Sbjct: 155 VHILLFY------KASTNIQDTEGNTPLHLACDEERVEE 187
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 19/129 (14%)
Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
+PLH+A++ G + VK ++ V+ + VNQ+G +P+H A+S + LL+
Sbjct: 75 SPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE------ 127
Query: 83 HQQGPEKN-----TPLHCAAIKGK---VHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
P+ T +H AA KG VH+L + I+D + +T LHLA
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHIL--LFYKASTNIQDT--EGNTPLHLACDEE 183
Query: 135 QFEAITVLV 143
+ E LV
Sbjct: 184 RVEEAKFLV 192
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + ++DG++P+H+A+ GH +V LLK +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
+ + + TPLH AA +G + ++ +L A DV + T LHLA + E
Sbjct: 62 -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEI 116
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRK 172
+ VL +K N +D+ G T LA R+
Sbjct: 117 VEVL------LKAGADVNAQDKFGKTPFDLAIRE 144
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ GH++ VK ++ D+ + +++G +P+H+A+ GH VV+ LL+ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-- 61
Query: 84 QQGPEKN--TPLHCAAIKGKVHVLSEMLSA 111
+KN TPLH AA G + V+ +L A
Sbjct: 62 -NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN--TPLHCAAIKGKVHVLSEMLSA 111
+G +P+H+A+ GH VV+ LL+ + +KN TPLH AA G + V+ +L A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 112 CPECIEDVTIQHDTALHLAIKNNQFEAITVLV 143
+ + T LHLA +N E + +L+
Sbjct: 58 GAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMK 150
TPLH AA G + V+ +L A + + T LHLA +N E + +L ++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLL------LE 56
Query: 151 REEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGTY 185
N KD+ G T LHLA R + +LLL G Y
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 27/151 (17%)
Query: 28 ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
A+ G+ D VK+++ D+ + + DG +P+H+A+ GH VV+ LL QG
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLL--------SQGA 61
Query: 88 EKN-------TPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNNQFEA 138
+ N TPLH AA G V+ +LS A P + T LHLA +N E
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD---SDGKTPLHLAAENGHKEV 118
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
+ +L + + N D G T L LA
Sbjct: 119 VKLL------LSQGADPNTSDSDGRTPLDLA 143
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 125 TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
T LHLA +N E + +L + + N KD G T LHLA ++ +LLL
Sbjct: 39 TPLHLAAENGHKEVVKLL------LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 183 GTYSSGR 189
G + +
Sbjct: 93 GADPNAK 99
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+A GH++ V+ ++ D+ + V+ +G +P+H+A+S+GH +V LLK + +
Sbjct: 38 PLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV-N 95
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEML 109
+ TPL+ AA G + ++ +L
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D A+ + G +P+H+A+++GH +V LL+ +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPEC-IEDVTIQHDTALHLAIKNNQFEAIT 140
+ TPLH AA G + ++ +L + +D T T L+LA E +
Sbjct: 62 -NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI--TPLYLAAYWGHLEIVE 118
Query: 141 VLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
VL +K N +D+ G T ++
Sbjct: 119 VL------LKHGADVNAQDKFGKTAFDIS 141
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + ++DG++P+H+A+ GH +V LLK +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
+ + + TPLH AA +G + ++ +L A DV + T LHLA + E
Sbjct: 62 -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEI 116
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
+ VL +K N +D+ G T LA
Sbjct: 117 VEVL------LKAGADVNAQDKFGKTPFDLA 141
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEAITVLVNWIR 147
TPLH AA +G + ++ +L A DV + T LHLA + E + VL
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEIVEVL----- 87
Query: 148 GMKREEIFNMKDEQGNTVLHLATRK 172
+K N KD+ G T LHLA R+
Sbjct: 88 -LKAGADVNAKDKDGYTPLHLAARE 111
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + ++DG++P+H+A+ GH +V LLK +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
+ + + TPLH AA +G + ++ +L A DV + T LHLA + E
Sbjct: 74 -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEI 128
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
+ VL +K N +D+ G T ++
Sbjct: 129 VEVL------LKAGADVNAQDKFGKTAFDIS 153
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEAITVLVNWIR 147
TPLH AA +G + ++ +L A DV + T LHLA + E + VL
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGA----DVNAKDKDGYTPLHLAAREGHLEIVEVL----- 99
Query: 148 GMKREEIFNMKDEQGNTVLHLATRK 172
+K N KD+ G T LHLA R+
Sbjct: 100 -LKAGADVNAKDKDGYTPLHLAARE 123
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
RK PLH+A+ Y V V+ ++ D+ H ++ G P+H A S GH V LLK
Sbjct: 57 RKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLK-HG 114
Query: 80 KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
+ + TPLH AA K +V V S +LS
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 27 VASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQG 86
VAS + V E++ + +E N+D +P+H+A+ H V+ L H+ G
Sbjct: 219 VASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL--------HKHG 270
Query: 87 PEKN-------TPLHCAAIKGKVHVLSEMLS 110
+ N T LH AA+ G + +LS
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLS 301
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ GH + V+ ++ D+ + + DG++P+H+A+ GH +V LLK + +
Sbjct: 50 PLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKYGADV-N 107
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAIT 140
Q TPLH AA +G + ++ +L DV Q TA ++I N +
Sbjct: 108 AQDAYGLTPLHLAADRGHLEIVEVLLKHGA----DVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 141 VL 142
+L
Sbjct: 164 IL 165
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ +Q G +P+H+A+ IGH +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLK-HGAD 72
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
+ + + TPLH AA G + ++ +L DV Q T LHLA E
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA----DVNAQDAYGLTPLHLAADRGHLEI 128
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
+ VL +K N +D+ G T ++
Sbjct: 129 VEVL------LKHGADVNAQDKFGKTAFDIS 153
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ E + G +P+H+A+ +GH +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
G + N TPLH AA +G + ++ +L + D TI T LHLA
Sbjct: 69 ---NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS-TPLHLAADTG 124
Query: 135 QFEAITVLVNWIRGMKREEIF 155
E + VL+ + + ++ F
Sbjct: 125 HLEIVEVLLKYGADVNAQDKF 145
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLG 181
DT LHLA + E + VL +K N D G+T LHLA ++ + E+LL
Sbjct: 48 DTPLHLAARVGHLEIVEVL------LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 182 HGT 184
+G
Sbjct: 102 YGA 104
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G+ D VK++I D+ + + DG +P+H A+ GH +V+ LL +
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVK-LLISKGAD 62
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEA 138
+ + + TPLH AA +G ++ ++S DV + T LH A K E
Sbjct: 63 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA----DVNAKDSDGRTPLHYAAKEGHKEI 118
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
+ +L++ +G N D G T L LA
Sbjct: 119 VKLLIS--KGAD----VNTSDSDGRTPLDLA 143
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ GH++ V+ ++ D+ N G +P+H+A+ GH +V LLK +
Sbjct: 50 PLHLAAKTGHLEIVEVLLKYGADVNAWDNY-GATPLHLAADNGHLEIVEVLLK-HGADVN 107
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAIT 140
+ E TPLH AA G + ++ +L DV Q TA ++I N +
Sbjct: 108 AKDYEGFTPLHLAAYDGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 141 VL 142
+L
Sbjct: 164 IL 165
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 55 GFSPMHIASSIGHTGVVRELLK--VEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSAC 112
G +P+H+A+ GH +V LLK + G TPLH AA G + ++ +L
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA---TPLHLAADNGHLEIVEVLLKHG 103
Query: 113 PECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIF 155
+ + + T LHLA + E + VL+ + + ++ F
Sbjct: 104 AD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF 145
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + + DG++P+H+A+S GH +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
G + N TPLH AA G + ++ +L + H T LHLA K
Sbjct: 69 ---NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH-TPLHLAAKYG 124
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
E + VL +K N +D+ G T ++
Sbjct: 125 HLEIVEVL------LKHGADVNAQDKFGKTAFDIS 153
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ +GH++ V+ ++ D+ + + G +P+H+A+ GH +V LLK + +
Sbjct: 50 PLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV-N 107
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAIT 140
+ TPLH AA +G + ++ +L DV Q TA ++I N +
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 141 VL 142
+L
Sbjct: 164 IL 165
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
G++P+H+A+ GH +V LLK + + +TPLH AA G + ++ +L
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA- 104
Query: 115 CIEDVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREEIF 155
DV + D T LHLA E + VL+ + + ++ F
Sbjct: 105 ---DVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMK 150
TPLH AA G + ++ +L + T+ T LHLA E + VL +K
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS-TPLHLAAHFGHLEIVEVL------LK 101
Query: 151 REEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHGT 184
N KD+ G T LHLA + + E+LL +G
Sbjct: 102 NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + +++DG +P+H+A+ +GH +V LLK +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 82 CHQQGPEKN---TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQ 135
E N TPLH AAI+G + ++ +L DV Q TA ++I N
Sbjct: 74 N----AEDNFGITPLHLAAIRGHLEIVEVLLKHGA----DVNAQDKFGKTAFDISIDNGN 125
Query: 136 FEAITVL 142
+ +L
Sbjct: 126 EDLAEIL 132
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 28 ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
A+ G+ D VK++I D+ + + DG +P+H A+ GH VV+ LL + + +
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDS 68
Query: 88 EKNTPLHCAAIKGKVHVLSEMLSACPEC-IEDVTIQHDTALHLAIKNNQFEAITVLVNWI 146
+ TPLH AA G V+ ++S + +D + T LH A +N E + +L++
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR--TPLHHAAENGHKEVVKLLIS-- 124
Query: 147 RGMKREEIFNMKDEQGNTVLHLA 169
+G N D G T L LA
Sbjct: 125 KGAD----VNTSDSDGRTPLDLA 143
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 16/93 (17%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+A G ++ V+ ++ D+ + + G +P+H+A+ GH +V LLK
Sbjct: 42 PLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLK------- 93
Query: 84 QQGPEKN-------TPLHCAAIKGKVHVLSEML 109
G + N TPLH AA+ G++ ++ +L
Sbjct: 94 -HGADVNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 23/162 (14%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+A G D V+ ++ D+ + + +G +P+H+A++ G +V LLK
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLK----- 60
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
G + N TPLH AA G + ++ +L + + T LHLA +
Sbjct: 61 ---NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSG 116
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK 176
Q E + VL +K N +D G T ++ + Q
Sbjct: 117 QLEIVEVL------LKHGADVNAQDALGLTAFDISINQGQED 152
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 20 RKGN-PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVE 78
+ GN PLH A+ GH + VK++++ D+ + ++DG +P+H+A+ GH +V+ LL +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL-AK 64
Query: 79 QKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSA 111
+ + + NTP H A G H + ++L A
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGH-HEIVKLLDA 96
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 53 QDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSAC 112
+DG +P+H A+ GH V++LL + + + + NTPLH AA G ++ +L+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 113 PECIEDVTIQHDTALHLAIKNNQFEAITVL 142
+ + + +T HLA KN E + +L
Sbjct: 66 AD-VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 124 DTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLG 181
+T LH A KN E + L + + N + + GNT LHLA + + +LLL
Sbjct: 10 NTPLHNAAKNGHAEEVKKL------LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 182 HGTYSSGR 189
G + R
Sbjct: 64 KGADVNAR 71
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
R+ PLH A+ Y V V+ ++ D+ H ++ G P+H A S GH V ELL
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHG 102
Query: 80 KLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
+ + K TPLH AA KGK + +L
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
R+ PLH A+ Y V V+ ++ D+ H ++ G P+H A S GH V ELL
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHG 98
Query: 80 KLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
+ + K TPLH AA KGK + +L
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 20 RKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQ 79
R+ PLH A+ Y V V+ ++ D+ H ++ G P+H A S GH V ELL
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHG 100
Query: 80 KLCHQQGPEKNTPLHCAAIKGKVHVLSEML 109
+ + K TPLH AA KGK + +L
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 28 ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGP 87
A+ G+ D VK+++ D + + DG +P+H A+ GH +V+ LL + + +
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDS 68
Query: 88 EKNTPLHCAAIKGKVHVLSEMLS--ACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNW 145
+ TPLH AA G ++ +LS A P + T LH A +N E + +L
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHYAAENGHKEIVKLL--- 122
Query: 146 IRGMKREEIFNMKDEQGNTVLHLA 169
+ + N D G T L LA
Sbjct: 123 ---LSKGADPNTSDSDGRTPLDLA 143
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 15 KLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVREL 74
K++ K +PLH A+ GHVD ++ ++ ++D +P+ A+ H V+ L
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 75 LKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
+K L + E +T LH AA KG V+ +LS DV Q D I
Sbjct: 64 IKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ---MDVNCQDDGGWTPMIWAT 119
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
+++ + LV + + + N++D + N LH A
Sbjct: 120 EYKHVD-LVKLL--LSKGSDINIRDNEENICLHWAA 152
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 80 KLCHQQGPEKNTPLHCAAIKGKV---HVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
K+ HQ K +PLH AA G V H+L + + C ED T L A +NN
Sbjct: 5 KMEHQN---KRSPLHAAAEAGHVDICHMLVQAGANIDTCSED----QRTPLMEAAENNHL 57
Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGHG 183
EA+ L+ K + + KD +G+T LHLA +K + + LL +G
Sbjct: 58 EAVKYLI------KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
LH A+ G VD + ++ + DL H VN G SP+HIA+ V L + +
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-L 205
Query: 85 QGPEKNTPLHCAAIKGKV 102
+ E TPL CA++ +V
Sbjct: 206 KNKEGETPLQCASLNSQV 223
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ GH++ V+ ++ D+ + GF+P+H+A+ GH +V LLK + +
Sbjct: 50 PLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV-N 107
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEML 109
+TPLH AA +G + ++ +L
Sbjct: 108 AFDMTGSTPLHLAADEGHLEIVEVLL 133
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 22/163 (13%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ +I D+ + V+ G +P+H+A+ GH +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
G + + TPLH AA+ G + ++ +L + + + T LHLA
Sbjct: 69 ---HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEG 124
Query: 135 QFEAITVLVNWIRGMKREE-----IFNMKDEQGNTVLHLATRK 172
E + VL+ + + ++ F++ + GN L + R
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ +GH++ V+ ++ D+ + + G +P+H+A+ GH +V LLK + +
Sbjct: 50 PLHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV-N 107
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAIT 140
TPLH AA +G + ++ +L DV Q TA ++I N +
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGA----DVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 141 VL 142
+L
Sbjct: 164 IL 165
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSE 107
G++P+H+A+ GH +V LLK G + N TPLH AA +G + ++
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLK--------NGADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 108 MLSACPECIEDVTIQHD-TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVL 166
+L + + + H T LHLA K E + VL +K N +D+ G T
Sbjct: 99 LLKNGADV--NASDSHGFTPLHLAAKRGHLEIVEVL------LKNGADVNAQDKFGKTAF 150
Query: 167 HLA 169
++
Sbjct: 151 DIS 153
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 125 TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELLLGH 182
T LHLA E + VL +K N KD G T LHLA R+ + E+LL +
Sbjct: 49 TPLHLAAHFGHLEIVEVL------LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 183 GT 184
G
Sbjct: 103 GA 104
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Query: 20 RKGN-PLHVASAYGHVDFVKEIINVRPDL-AHEVNQDGFSPMHIASSIGHTGVVRELLK 76
RKGN PLH+A+ Y H++ V+ ++ D+ AH+ DG +P+H+A+ GH +V LLK
Sbjct: 45 RKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD--NDGSTPLHLAALFGHLEIVEVLLK 101
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
G +P+H+A+ H +V LLK + + +TPLH AA+ G + ++ +L
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLK-HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA- 104
Query: 115 CIEDVTIQH---DTALHLAIKNNQFEAITVL 142
DV Q TA ++I N + +L
Sbjct: 105 ---DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQKL 81
PLH+ GH++ ++ ++ D+ + ++ G++P+H+A+ GH +V LLK +
Sbjct: 50 PLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA 108
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEA 138
QG TPLH AA G + ++ +L DV Q TA ++I N +
Sbjct: 109 MDYQGY---TPLHLAAEDGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISIDNGNEDL 161
Query: 139 ITVL 142
+L
Sbjct: 162 AEIL 165
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
G +P+H+ + GH ++ LLK + TPLH AA +G + ++ +L +
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 115 CIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIF 155
+ + Q T LHLA ++ E + VL+ + + ++ F
Sbjct: 106 -VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKF 145
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH A V+E+++ +P L + +QDG P+H + S + LL + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 84 QQGPEKN--TPLHCAAIKGKVHVLSEMLSAC--PECIEDVTIQHDTALHLAIKNNQFEAI 139
P+ + TP H A G + V+ + P+ + +T Q T LHLA+ FE
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 140 TVLVNWIRGMKREEIFN 156
L+ ++ ++ FN
Sbjct: 124 QFLIENGASVRIKDKFN 140
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH A V+E+++ +P L + +QDG P+H + S + LL + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 84 QQGPEKN--TPLHCAAIKGKVHVLSEMLSAC--PECIEDVTIQHDTALHLAIKNNQFEAI 139
P+ + TP H A G + V+ + P+ + +T Q T LHLA+ FE
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 140 TVLVNWIRGMKREEIFN 156
L+ ++ ++ FN
Sbjct: 124 QFLIENGASVRIKDKFN 140
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH A V+E+++ +P L + +QDG P+H + S + LL + +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 84 QQGPEKN--TPLHCAAIKGKVHVLSEMLSAC--PECIEDVTIQHDTALHLAIKNNQFEAI 139
P+ + TP H A G + V+ + P+ + +T Q T LHLA+ FE
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVS 123
Query: 140 TVLVNWIRGMKREEIFN 156
L+ ++ ++ FN
Sbjct: 124 QFLIENGASVRIKDKFN 140
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + + G +P+H+A++ GH +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
G + N TPLH AA+ G + ++ +L + + V DT LHLA
Sbjct: 69 ---HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMG 124
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
E + VL +K N +D+ G T
Sbjct: 125 HLEIVEVL------LKHGADVNAQDKFGKT 148
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PLH+A+ YGH++ V+ ++ D+ + + GF+P+H+A+ GH +V LLK
Sbjct: 83 PLHLAALYGHLEIVEVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH+A+ GH++ V+ ++ D+ + ++ G +P+H+A+ GH +V LLK
Sbjct: 50 PLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLLK------- 101
Query: 84 QQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKN 133
G + N TPLH AA G + ++ +L DV Q TA ++I N
Sbjct: 102 -NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA----DVNAQDKFGKTAFDISIDN 156
Query: 134 NQFEAITVL 142
+ +L
Sbjct: 157 GNEDLAEIL 165
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK--VEQ 79
G L A+ G D V+ ++ D+ E + G +P+H+A+ GH +V LLK +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 80 KLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAI 139
+ G +TPLH AA+ G + ++ +L + T T LHLA E +
Sbjct: 74 NAADKMG---DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF-TPLHLAADAGHLEIV 129
Query: 140 TVLVNWIRGMKREEIF 155
VL+ + + ++ F
Sbjct: 130 EVLLKYGADVNAQDKF 145
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 62 ASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI 121
A+ G VR L+ + + K TPLH AAIKG + ++ +L + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKHGAD-VNAADK 78
Query: 122 QHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK--ELL 179
DT LHLA E + VL +K N D G T LHLA + E+L
Sbjct: 79 MGDTPLHLAALYGHLEIVEVL------LKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 180 LGHGT 184
L +G
Sbjct: 133 LKYGA 137
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PLH+A+ GH++ V+ ++ D+ + + +GF+P+H+A++IGH +V LLK
Sbjct: 83 PLHLAADRGHLEVVEVLLKNGADV-NANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVHVLSE 107
G++P+H+A+ GH +V LLK G + N TPLH AA +G + V+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK--------NGADVNADDSLGVTPLHLAADRGHLEVVEV 98
Query: 108 MLSACPECIEDVTIQHD--TALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTV 165
+L + + H+ T LHLA E + VL +K N +D+ G T
Sbjct: 99 LLKNGADVNAN---DHNGFTPLHLAANIGHLEIVEVL------LKHGADVNAQDKFGKTA 149
Query: 166 LHLA 169
++
Sbjct: 150 FDIS 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + + G +P+H+A++ GH +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
G + N TPLH AA+ G + ++ +L + + V DT LHLA
Sbjct: 69 ---HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMG 124
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
E + VL +K N +D+ G T ++
Sbjct: 125 HLEIVEVL------LKHGADVNAQDKFGKTAFDIS 153
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDL-AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
PLH+A+ GH++ V+ ++ D+ A +V G++P+H+A+ GH +V LLK +
Sbjct: 50 PLHLAAYSGHLEIVEVLLKHGADVDASDVF--GYTPLHLAAYWGHLEIVEVLLKNGADV- 106
Query: 83 HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEAI 139
+ + TPLH AA G + ++ +L DV Q TA ++I N +
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA----DVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 140 TVL 142
+L
Sbjct: 163 EIL 165
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + + G +P+H+A+ GH +V LLK
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-----TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
H + + TPLH AA G + ++ +L + + + T LHLA K
Sbjct: 69 -HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYL 126
Query: 137 EAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
E + VL +K N +D+ G T ++
Sbjct: 127 EIVEVL------LKHGADVNAQDKFGKTAFDIS 153
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
NPLH A+ G++ +++E ++ R + + +++ G + ++ A GH +V L
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 83 HQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
+QQ +T LH AA KG ++ +L+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PL++A+A+GH++ V+ ++ D+ + V+ GF+P+H+A+ IGH + LLK
Sbjct: 50 PLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + ++ G +P+++A++ GH +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAI 131
G + N TPLH AA G + + +L DV Q TA ++I
Sbjct: 69 ---NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA----DVNAQDKFGKTAFDISI 121
Query: 132 KNNQFEAITVL 142
N + +L
Sbjct: 122 GNGNEDLAEIL 132
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
LH+AS G + V+ ++ D + + G++P+H A + GH VV ELL + L +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVV-ELLLQHKALVNT 71
Query: 85 QGPEKNTPLHCAAIKGKVHVLSEMLS 110
G + ++PLH AA G V ++ +LS
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 51 VNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKN-------TPLHCAAIKGKVH 103
N G + +HIAS G V LL Q G + N TPLH A G +
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLL--------QNGSDPNVKDHAGWTPLHEACNHGHLK 57
Query: 104 VLSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMK 158
V+ E+L + Q+D+ LH A KN + + +L+++ IF ++
Sbjct: 58 VV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLR 111
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 36/141 (25%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL-- 81
PLH A+ GH+ V +++ D + ++ +G S +H+A+ GHT +V L+ Q +
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 82 ---------------CHQQGP-----------------EKNTPLHCAAIKGKVHVLSEML 109
H P KNT LH A + G V+S +L
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Query: 110 SACPECIEDVTIQHDTALHLA 130
A ++ I+ ++AL LA
Sbjct: 198 EAGAN-VDAQNIKGESALDLA 217
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELL--KVEQKL 81
PLH A G V+ +I +R + +N+ +P+H+A+S GH +V++LL K +
Sbjct: 42 PLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
++ G N PLH A G+ V ++++
Sbjct: 101 VNEHG---NVPLHYACFWGQDQVAEDLVA 126
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 42 NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK 101
N DL ++ + GFSP+H A G + VV E+L + + +TPLH AA G
Sbjct: 27 NTENDL-NQGDDHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGH 84
Query: 102 VHVLSEML 109
++ ++L
Sbjct: 85 RDIVQKLL 92
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELL--KVEQKL 81
PLH A G V+ +I +R + +N+ +P+H+A+S GH +V++LL K +
Sbjct: 37 PLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLS 110
++ G N PLH A G+ V ++++
Sbjct: 96 VNEHG---NVPLHYACFWGQDQVAEDLVA 121
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 42 NVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGK 101
N DL ++ + GFSP+H A G + VV E+L + + +TPLH AA G
Sbjct: 22 NTENDL-NQGDDHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGH 79
Query: 102 VHVLSEML 109
++ ++L
Sbjct: 80 RDIVQKLL 87
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 57 SPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECI 116
SP+ +A+ + +LLK E HQ+G T LH AA+ + ++ A PE +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 117 -EDVT---IQHDTALHLAIKNNQFEAITVLV 143
E +T + TALH+A+ N + L+
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALL 95
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
G SP+H+A+ GH LL+ + ++ TPLH AA +G +++ +L +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR-TPLHMAASEGHANIVEVLLKHGAD 92
Query: 115 CIEDVTIQHDTALHLAIKNNQFEAITVLVNW 145
++ TALH A ++N E + +L+ +
Sbjct: 93 VNAKDMLKM-TALHWATEHNHQEVVELLIKY 122
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G LHVA+A G+ + +K +I R D+ + + DG++P+H A+ G R L+ + L
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILV---ENL 255
Query: 82 CHQQGPEK 89
C + K
Sbjct: 256 CDMEAVNK 263
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
+H +A G +D +KE + +L ++ ++ GF+P+ AS+ G VR LL+ H
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 85 QGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI---QHDTALHLAIKNNQFEAITV 141
E+ + L A+ G ++ +L E D+ I T L A++ N + +
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 142 LVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK 176
L + R + + G T + LA RK
Sbjct: 121 L------LARGADLTTEADSGYTPMDLAVALGYRK 149
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 2 KKETAIKAFIFLVKLKALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHI 61
K+ + A V + + +PLHVA+ +G D + ++ + A N D P+H+
Sbjct: 67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHL 125
Query: 62 ASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI 121
A GH VV+ LL K +++ NTPL A G H L +L I
Sbjct: 126 ACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPL-IYACSGGHHELVALLLQHGASINASNN 183
Query: 122 QHDTALHLAI 131
+ +TALH A+
Sbjct: 184 KGNTALHEAV 193
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 52 NQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSA 111
+QDG SP+H+A+ G ++ LLK + ++ PLH A +G V+ +L +
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 112 CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATR 171
+ + +T L A E + +L ++ N + +GNT LH A
Sbjct: 142 NAK-PNKKDLSGNTPLIYACSGGHHELVALL------LQHGASINASNNKGNTALHEAVI 194
Query: 172 KKQ--RKELLLGHGT 184
+K ELLL HG
Sbjct: 195 EKHVFVVELLLLHGA 209
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 21 KGNPLHVA-----SAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELL 75
K NPL +A S G D V+ II D N +G + +H A GHT +V+ L+
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV 90
Query: 76 KVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
+ + + + TPLHCAA V V
Sbjct: 91 QFGVNV-NAADSDGWTPLHCAASCNNVQV 118
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
LH A GH + VK ++ ++ + + DG++P+H A+S + V + L++
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 21 KGNPLHV---ASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
K NPL + +S G D V+ II D N +G + +H A GHT +V+ L++
Sbjct: 34 KFNPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 78 EQKLCHQQGPEKNTPLHCAAIKGKVHV 104
+ + + TPLHCAA V V
Sbjct: 93 GVNV-NAADSDGWTPLHCAASCNNVQV 118
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
LH A GH + VK ++ ++ + + DG++P+H A+S + V + L++
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
+P+H A+ GHV+ V +I ++ H+++ G +P+++A V++LL+ +
Sbjct: 102 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADV 160
Query: 82 CHQQGPEKNTPLHCAA 97
QG +++PLH A
Sbjct: 161 --NQGKGQDSPLHAVA 174
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 21/181 (11%)
Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
+P+H A+ +GH ++ +I+ + + + D SP+H A GH V+ LLK ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV- 62
Query: 83 HQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTAL----HLAIKNNQFEA 138
+ + +TPL A + G ++ +L ++Q ++ L H A + E
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQ------HGASVQPESDLASPIHEAARRGHVEC 116
Query: 139 ITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR---KELLLGHGTYSSGRLELIAL 195
+ L+ + G +I ++ T L+LA +QR K+LL + G+ + L
Sbjct: 117 VNSLIAY-GGNIDHKISHL-----GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPL 170
Query: 196 H 196
H
Sbjct: 171 H 171
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PLH+A+ GH++ V+ ++ D+ + + G +P+H+A+++GH +V LL+
Sbjct: 50 PLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + ++ G +P+H+A+ GH +V LLK +
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 82 CHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAIKNNQFEA 138
+ TPLH AA G + ++ +L E DV Q TA ++I N +
Sbjct: 74 NASDSWGR-TPLHLAATVGHLEIVEVLL----EYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 139 ITVL 142
+L
Sbjct: 129 AEIL 132
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PL +A+ +GH++ V+ ++ D+ + + +G +P+H+A+ GH +V LLK
Sbjct: 83 PLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 23/155 (14%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ E + G++P+H+A+ GH +V LLK
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNN 134
G + N TPL AA+ G + ++ +L + + H T LHLA
Sbjct: 69 ---NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH-TPLHLAAMFG 124
Query: 135 QFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLA 169
E + VL +K N +D+ G T ++
Sbjct: 125 HLEIVEVL------LKNGADVNAQDKFGKTAFDIS 153
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
+H +A G +D +KE + +L ++ ++ GF+P+ AS+ G VR LL+ H
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHI 64
Query: 85 QGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTI---QHDTALHLAIKNNQFEAITV 141
E+ + L A+ G ++ +L E D+ I T L A+ N + +
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 142 LVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQRK 176
L + R + + G T + LA RK
Sbjct: 121 L------LARGADLTTEADSGYTPMDLAVALGYRK 149
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDL-AHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PLH+A+ GH++ V+ ++ D+ A ++ G +P+H+A+++GH +V LL+
Sbjct: 50 PLHLAAKRGHLEIVEVLLKHGADVNARDIW--GRTPLHLAATVGHLEIVEVLLE 101
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + ++ G +P+H+A+ GH +V LLK
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAI 131
G + N TPLH AA G + ++ +L E DV Q TA ++I
Sbjct: 69 ---HGADVNARDIWGRTPLHLAATVGHLEIVEVLL----EYGADVNAQDKFGKTAFDISI 121
Query: 132 KNNQFEAITVL 142
N + +L
Sbjct: 122 DNGNEDLAEIL 132
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 23 NPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLC 82
+P+H A+ GHV+ V +I ++ H+++ G +P+++A V++LL+ +
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADV- 216
Query: 83 HQQGPEKNTPLH 94
QG +++PLH
Sbjct: 217 -NQGKGQDSPLH 227
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 21/186 (11%)
Query: 18 ALRKGNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKV 77
A+ +P+H A+ +GH ++ +I+ + + + D SP+H A GH V+ LLK
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114
Query: 78 EQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTAL----HLAIKN 133
++ + + +TPL A + G ++ +L ++Q ++ L H A +
Sbjct: 115 GAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQ------HGASVQPESDLASPIHEAARR 167
Query: 134 NQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLATRKKQR---KELLLGHGTYSSGRL 190
E + L+ + G +I ++ T L+LA +QR K+LL + G+
Sbjct: 168 GHVECVNSLIAY-GGNIDHKISHL-----GTPLYLACENQQRACVKKLLESGADVNQGKG 221
Query: 191 ELIALH 196
+ LH
Sbjct: 222 QDSPLH 227
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PLH+A+ GH++ V+ ++ D+ + + G +P+H+A+++GH +V LL+
Sbjct: 50 PLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ + ++ G +P+H+A+ GH +V LLK
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAI 131
G + N TPLH AA G + ++ +L E DV Q TA ++I
Sbjct: 69 ---HGADVNASDIWGRTPLHLAATVGHLEIVEVLL----EYGADVNAQDKFGKTAFDISI 121
Query: 132 KNNQFEAITVL 142
N + +L
Sbjct: 122 DNGNEDLAEIL 132
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 89 KNTPLHCAAIKGKVHVLSEMLSA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIR 147
+ TPLH A I + + +L A C + D + +T LHLA + ++ VL
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRD--FRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 148 GMKREEIFNMKDEQGNTVLHLAT 170
I + G+T LHLA+
Sbjct: 100 TPHLHSILKATNYNGHTCLHLAS 122
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 15 KLKALRKGNPLHVASAYGHVDFVKEIIN--VRPDLAHEV----NQDGFSPMHIASSIGHT 68
+L+ R PLH+A G + V + P L H + N +G + +H+AS G+
Sbjct: 69 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-HSILKATNYNGHTCLHLASIHGYL 127
Query: 69 GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQ 122
G+V L+ + + Q+ T LH A ++S +L C + VT Q
Sbjct: 128 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQ 180
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 49 HEVNQDGFSPMHIASSIGHTGVVRELL---KVEQKLCHQQGPEKNTPLHCAAIKGKVHVL 105
++ +DG S +H+A + E++ K + + Q + TPLH A I + +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 106 SEMLSA-CPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
+L A C + D + +T LHLA + ++ VL I + G+T
Sbjct: 62 EALLGAGCDPELRD--FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 165 VLHLAT 170
LHLA+
Sbjct: 120 CLHLAS 125
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 15 KLKALRKGNPLHVASAYGHVDFVKEIIN--VRPDLAHEV----NQDGFSPMHIASSIGHT 68
+L+ R PLH+A G + V + P L H + N +G + +H+AS G+
Sbjct: 72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL-HSILKATNYNGHTCLHLASIHGYL 130
Query: 69 GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQ 122
G+V L+ + + Q+ T LH A ++S +L C + VT Q
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQ 183
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 20 RKGNP-LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVE 78
R GN +H A+ G +D ++ ++ + D+ E N+ G P+H+A+ GH VV L+K
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHLRVVEFLVKHT 126
Query: 79 QKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
+ + +T A + G+ V+S M
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 45 PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
PDL ++ G + +H A+ G ++ LL+ Q + + E N PLH AA +G + V
Sbjct: 63 PDLK---DRTGNAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
+ ++ + + DTA LA + E ++++
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 19 LRKGNP----------LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHT 68
LR NP +H A+ G +D ++ ++ + D+ E N+ G P+H+A+ GH
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHL 116
Query: 69 GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
VV L+K + + +T A + G+ V+S M
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 45 PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
PDL ++ GF+ +H A+ G ++ LL+ Q + + E N PLH AA +G + V
Sbjct: 63 PDLK---DRTGFAVIHDAARAGQLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
+ ++ + + DTA LA + E ++++
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
G +P+H+A+ +GH +V LLK + + G TPLH AA + ++ +L
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLKHGA- 104
Query: 115 CIEDVTIQH---DTALHLAIKNNQFEAITVL 142
DV Q TA ++I N + +L
Sbjct: 105 ---DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PLH+A+ GH++ V+ ++ D+ N G +P+H+A+ H +V LLK
Sbjct: 50 PLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLK 101
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 19 LRKGNP----------LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHT 68
LR NP +H A+ G +D ++ ++ + D+ E N+ G P+H+A+ GH
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHL 116
Query: 69 GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
VV L+K + + +T A + G+ V+S M
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 45 PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
PDL ++ GF+ +H A+ G ++ LL+ Q + + E N PLH AA +G + V
Sbjct: 63 PDLK---DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
+ ++ + + DTA LA + E ++++
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 19 LRKGNP----------LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHT 68
LR NP +H A+ G +D ++ ++ + D+ E N+ G P+H+A+ GH
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHL 116
Query: 69 GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
VV L+K + + +T A + G+ V+S M
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 45 PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
PDL ++ GF+ +H A+ G ++ LL+ Q + + E N PLH AA +G + V
Sbjct: 63 PDLK---DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
+ ++ + + DTA LA + E ++++
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 4 ETAIKAFIF---LVKLKALRKG-----------NPLHVASAYGHVDFVKEIINVRPDLAH 49
+TA++ +F + L+ L++G +P+H A+ G +D +K ++ D+ +
Sbjct: 43 KTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-N 101
Query: 50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKG 100
+ G P+H+A GHT VV L E L H++ TPL A +G
Sbjct: 102 VPDGTGALPIHLAVQEGHTAVV-SFLAAESDL-HRRDARGLTPLELALQRG 150
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 4 ETAIKAFIF---LVKLKALRKG-----------NPLHVASAYGHVDFVKEIINVRPDLAH 49
+TA++ +F V L+ L++G +P+H A+ G +D +K ++ D+ +
Sbjct: 45 KTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-N 103
Query: 50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLS 106
++ G P+H+A GH+ VV L E L H + TPL A +G +++
Sbjct: 104 ALDSTGSLPIHLAIREGHSSVV-SFLAPESDL-HHRDASGLTPLELARQRGAQNLMD 158
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 4 ETAIKAFIF---LVKLKALRKG-----------NPLHVASAYGHVDFVKEIINVRPDLAH 49
+TA++ +F V L+ L++G +P+H A+ G +D +K ++ D+ +
Sbjct: 43 KTALQVMMFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-N 101
Query: 50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLS 106
++ G P+H+A GH+ VV L E L H + TPL A +G +++
Sbjct: 102 ALDSTGSLPIHLAIREGHSSVV-SFLAPESDL-HHRDASGLTPLELARQRGAQNLMD 156
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 19 LRKGNP----------LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHT 68
LR NP +H A+ G +D ++ ++ + D+ E N+ G P+H+A+ GH
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNE-GNLPLHLAAKEGHL 116
Query: 69 GVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEM 108
VV L+K + + +T A + G+ V+S M
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 45 PDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHV 104
PDL ++ GF+ +H A+ G ++ LL+ Q + + E N PLH AA +G + V
Sbjct: 63 PDLK---DRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVL 142
+ ++ + + DTA LA + E ++++
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 4 ETAIKAFIF---LVKLKALRKG-----------NPLHVASAYGHVDFVKEIINVRPDLAH 49
+TA++ +F + L+ L++G +P+H A+ G +D +K ++ D+ +
Sbjct: 37 KTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-N 95
Query: 50 EVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKG 100
+ G P+H+A GHT VV L E L H++ TPL A +G
Sbjct: 96 VPDGTGALPIHLAVQEGHTAVV-SFLAAESDL-HRRDARGLTPLELALQRG 144
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
G L A+ G D V+ ++ D+ + ++DG++P+H+A+ GH +V LLK
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 25 LHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQ 84
LH+A+AY D K ++ D + N G +P+H A S GV + L++
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 85 QGPEKNTPLHCAA 97
+ + TPL AA
Sbjct: 120 RMHDGTTPLILAA 132
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 25/134 (18%)
Query: 54 DGFSPMHIASSIG---HTG----------VVRELLKVEQKLCHQQGPEKNTPLHCAAIKG 100
DGF+P+ IAS G TG V+ + + L +Q T LH AA
Sbjct: 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYS 68
Query: 101 KVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREEIFNM 157
+ +L A D IQ + T LH A+ + +L+ R +
Sbjct: 69 RSDAAKRLLEASA----DANIQDNMGRTPLHAAVSADAQGVFQILIR-----NRATDLDA 119
Query: 158 KDEQGNTVLHLATR 171
+ G T L LA R
Sbjct: 120 RMHDGTTPLILAAR 133
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 28/165 (16%)
Query: 47 LAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPE-------KNTPLHCAAIK 99
+A ++DG +P+HIA G+ V L+ + Q Q G E + TPLH A I
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQ----QGGRELDIYNNLRQTPLHLAVIT 56
Query: 100 GKVHVLSEMLS--ACPECIEDVTIQH-DTALHLAIKNNQFEAITVLVNWIRGMKREEIFN 156
V+ +++ A P ++ +H TA HLA ++ + L++ +
Sbjct: 57 TLPSVVRLLVTAGASPMALD----RHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LE 110
Query: 157 MKDEQGNTVLHLA--TRKKQRKELLLGHGT------YSSGRLELI 193
++ G T LH+A T ++ +LLL G SGR LI
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 155
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 55 GFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAIKGKVHVLSEMLSACPE 114
G + +H A+ + + +V+ L+ + +Q + TP+ AA +G++ V+ ++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA- 337
Query: 115 CIEDVTIQHDTALHLAIKNNQFEAITVL 142
+E V TA LA NN + +
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
PLH+A+ H++ V+ ++ D+ + ++ G +P+H+ + GH +V LLK
Sbjct: 50 PLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+ E ++ G +P+H+A+ H +V LLK
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLK----- 68
Query: 82 CHQQGPEKN-------TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH---DTALHLAI 131
G + N TPLH A+ G + ++ +L DV Q TA ++I
Sbjct: 69 ---NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGA----DVNAQDKFGKTAFDISI 121
Query: 132 KNNQFEAITVL 142
N + +L
Sbjct: 122 DNGNEDLAEIL 132
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 119 VTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
VT DTALHLA+ + + L+ + G E +++++ G T LHLA
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAA 53
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 119 VTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNTVLHLAT 170
VT DTALHLA+ + + L+ + G E +++++ G T LHLA
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAG---HEYLDLQNDLGQTALHLAA 53
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 48 AHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCA---AIKGKVHV 104
A+ + G +P+H A + GV + LL+ + + + TPL A AI+G V
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMV-- 134
Query: 105 LSEMLSACPECIEDVTIQHDTALHLAIKNNQFEAITVLVNWIRGMKREEIFNMKDEQGNT 164
E L I TALH A N EA+ +L+ + R+ +D++ T
Sbjct: 135 --EDLITADADINAADNSGKTALHWAAAVNNTEAVNILL--MHHANRD----AQDDKDET 186
Query: 165 VLHLATRK 172
L LA R+
Sbjct: 187 PLFLAARE 194
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 24 PLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKLCH 83
PLH A A + + ++ R + DG +P+ +A+ + G+V +L+ + +
Sbjct: 87 PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 146
Query: 84 QQGPEKNTPLHCAAIKGKVHVLSEML--SACPECIEDVTIQHDTALHLAIKNNQFEAITV 141
K T LH AA ++ +L A + +D + +T L LA + +EA
Sbjct: 147 ADNSGK-TALHWAAAVNNTEAVNILLMHHANRDAQDD---KDETPLFLAAREGSYEASKA 202
Query: 142 LVN 144
L++
Sbjct: 203 LLD 205
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLK 76
G L A+ G D V+ ++ D+A + +++G +P+H+A+ GH VV+ LL+
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|2HLS|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aeropyrum Pernix K1
pdb|2HLS|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aeropyrum Pernix K1
Length = 243
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 71 VRELLKVEQKLCHQQ-GPEKNTPLHCAAIKGKVHVLSEMLSACPECIEDVTIQH 123
+R L++V +L + G E T ++KG+VH+ + + +CP C V + H
Sbjct: 108 IRALVEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAH 161
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 22 GNPLHVASAYGHVDFVKEIINVRPDLAHEVNQDGFSPMHIASSIGHTGVVRELLKVEQKL 81
G L A+ G D V+ ++ D+A + +++G +P+H+A+ GH VV+ LL+ +
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 82 CHQQ 85
Q
Sbjct: 84 XAQD 87
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 54 DGFSPMHIASSIGHTGVVRELLKVEQKLCHQQGPEKNTPLHCAAI 98
D + M IA S+G + LL E KL + PL CA +
Sbjct: 39 DDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATL 83
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 91 TPLHCAAIKGKVHVLSEMLSACPECIEDVTIQHDTALHLAIKNNQF 136
TPL A + G + + +++ + +ED I+ TAL A+KNN+
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRL 81
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 25/134 (18%)
Query: 54 DGFSPMHIASSIG---HTG----------VVRELLKVEQKLCHQQGPEKNTPLHCAAIKG 100
DGF+P+ IAS G TG V+ + + L +Q T LH AA
Sbjct: 10 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS 69
Query: 101 KVHVLSEMLSACPECIEDVTIQHD---TALHLAIKNNQFEAITVLVNWIRGMKREEIFNM 157
+ +L A D IQ + T LH A+ + +L+ R +
Sbjct: 70 RSDAAKRLLEASA----DANIQDNMGRTPLHAAVSADAQGVFQILIR-----NRATDLDA 120
Query: 158 KDEQGNTVLHLATR 171
+ G T L LA R
Sbjct: 121 RMHDGTTPLILAAR 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,179,352
Number of Sequences: 62578
Number of extensions: 359247
Number of successful extensions: 1394
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 922
Number of HSP's gapped (non-prelim): 235
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)