Query 046833
Match_columns 218
No_of_seqs 203 out of 1725
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.9 1.7E-21 3.7E-26 171.6 10.3 79 98-178 203-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 8.3E-17 1.8E-21 102.1 1.6 44 126-170 1-44 (44)
3 COG5540 RING-finger-containing 99.4 3.8E-14 8.2E-19 121.8 3.4 52 123-175 321-373 (374)
4 PHA02929 N1R/p28-like protein; 99.4 8.5E-14 1.8E-18 118.0 5.5 75 100-174 148-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.4 1.8E-13 4E-18 96.1 3.8 47 123-170 17-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 99.3 2.1E-12 4.5E-17 113.9 6.7 56 122-178 284-349 (491)
7 KOG0317 Predicted E3 ubiquitin 99.2 3.6E-11 7.8E-16 103.1 5.4 51 122-176 236-286 (293)
8 PLN03208 E3 ubiquitin-protein 99.1 1.1E-10 2.4E-15 95.6 6.3 50 123-176 16-81 (193)
9 cd00162 RING RING-finger (Real 99.1 6.7E-11 1.5E-15 73.6 3.8 44 127-173 1-45 (45)
10 PF13920 zf-C3HC4_3: Zinc fing 99.1 7.5E-11 1.6E-15 76.6 3.2 46 125-174 2-48 (50)
11 PF12861 zf-Apc11: Anaphase-pr 99.0 1.5E-10 3.3E-15 82.7 3.5 52 124-175 20-83 (85)
12 PF13923 zf-C3HC4_2: Zinc fing 99.0 1.4E-10 3E-15 71.5 2.8 39 128-169 1-39 (39)
13 KOG0823 Predicted E3 ubiquitin 99.0 5.2E-10 1.1E-14 93.4 6.1 52 122-177 44-98 (230)
14 KOG0802 E3 ubiquitin ligase [P 98.9 1.8E-09 4E-14 102.0 7.2 54 123-177 289-344 (543)
15 PHA02926 zinc finger-like prot 98.9 6.6E-10 1.4E-14 92.4 3.7 52 123-174 168-230 (242)
16 PF14634 zf-RING_5: zinc-RING 98.9 1E-09 2.2E-14 69.4 3.4 44 127-171 1-44 (44)
17 COG5194 APC11 Component of SCF 98.9 9.4E-10 2E-14 77.1 2.5 50 126-175 21-82 (88)
18 KOG0320 Predicted E3 ubiquitin 98.9 1.5E-09 3.3E-14 87.2 3.3 62 113-176 119-180 (187)
19 smart00184 RING Ring finger. E 98.8 3.3E-09 7.1E-14 63.6 3.4 38 128-169 1-39 (39)
20 PF00097 zf-C3HC4: Zinc finger 98.8 2.2E-09 4.9E-14 66.5 2.2 39 128-169 1-41 (41)
21 PF15227 zf-C3HC4_4: zinc fing 98.7 8.5E-09 1.8E-13 64.6 2.8 38 128-169 1-42 (42)
22 smart00504 Ubox Modified RING 98.7 2.5E-08 5.5E-13 67.2 4.4 45 126-174 2-46 (63)
23 KOG0828 Predicted E3 ubiquitin 98.7 2.2E-08 4.8E-13 91.4 4.6 50 125-175 571-635 (636)
24 KOG1734 Predicted RING-contain 98.7 1.7E-08 3.7E-13 86.0 3.6 49 124-173 223-280 (328)
25 KOG1493 Anaphase-promoting com 98.6 4.5E-09 9.9E-14 73.1 -0.3 51 124-174 19-81 (84)
26 TIGR00599 rad18 DNA repair pro 98.6 4.3E-08 9.4E-13 88.9 3.9 49 123-175 24-72 (397)
27 smart00744 RINGv The RING-vari 98.5 1.1E-07 2.5E-12 61.5 3.4 42 127-170 1-49 (49)
28 KOG2930 SCF ubiquitin ligase, 98.5 4.9E-08 1.1E-12 71.7 1.3 49 124-172 45-106 (114)
29 COG5574 PEX10 RING-finger-cont 98.5 8.5E-08 1.8E-12 81.6 2.5 50 123-176 213-264 (271)
30 KOG0804 Cytoplasmic Zn-finger 98.4 6.9E-08 1.5E-12 87.4 1.3 51 123-176 173-224 (493)
31 PF13445 zf-RING_UBOX: RING-ty 98.4 1.8E-07 3.9E-12 58.9 2.7 38 128-167 1-43 (43)
32 PF11793 FANCL_C: FANCL C-term 98.3 1.8E-07 3.9E-12 65.1 0.6 50 125-174 2-66 (70)
33 KOG2164 Predicted E3 ubiquitin 98.3 4.6E-07 1E-11 83.4 2.9 50 125-178 186-240 (513)
34 COG5219 Uncharacterized conser 98.2 2E-07 4.3E-12 90.7 -0.2 51 124-174 1468-1523(1525)
35 TIGR00570 cdk7 CDK-activating 98.1 2.2E-06 4.8E-11 75.2 4.1 51 125-176 3-56 (309)
36 KOG2177 Predicted E3 ubiquitin 98.0 1.6E-06 3.6E-11 73.5 1.4 44 123-170 11-54 (386)
37 KOG4265 Predicted E3 ubiquitin 98.0 4.2E-06 9E-11 74.2 3.5 52 123-178 288-340 (349)
38 PF04564 U-box: U-box domain; 98.0 4.6E-06 1E-10 58.3 3.0 48 125-176 4-52 (73)
39 COG5432 RAD18 RING-finger-cont 98.0 3E-06 6.6E-11 73.2 2.0 49 124-176 24-72 (391)
40 KOG0827 Predicted E3 ubiquitin 97.9 3.8E-06 8.2E-11 75.0 2.1 48 126-174 5-56 (465)
41 KOG0287 Postreplication repair 97.9 3.3E-06 7.2E-11 74.3 0.8 48 125-176 23-70 (442)
42 KOG4445 Uncharacterized conser 97.9 3.3E-06 7.1E-11 73.2 0.3 53 125-178 115-190 (368)
43 KOG1645 RING-finger-containing 97.9 9.3E-06 2E-10 73.0 3.0 48 124-171 3-53 (463)
44 KOG3970 Predicted E3 ubiquitin 97.8 1.2E-05 2.5E-10 67.3 2.7 56 121-178 46-109 (299)
45 KOG1039 Predicted E3 ubiquitin 97.6 2.8E-05 6.1E-10 69.5 2.5 51 123-173 159-220 (344)
46 KOG0825 PHD Zn-finger protein 97.5 1.1E-05 2.5E-10 77.5 -1.5 51 124-175 122-172 (1134)
47 KOG0311 Predicted E3 ubiquitin 97.5 7.4E-06 1.6E-10 72.4 -2.8 50 124-176 42-92 (381)
48 PF14835 zf-RING_6: zf-RING of 97.5 2.6E-05 5.7E-10 52.8 0.3 46 126-176 8-53 (65)
49 PF05883 Baculo_RING: Baculovi 97.5 4E-05 8.6E-10 59.4 0.9 35 125-160 26-66 (134)
50 KOG1785 Tyrosine kinase negati 97.3 0.00011 2.4E-09 66.2 2.2 49 126-178 370-420 (563)
51 KOG0978 E3 ubiquitin ligase in 97.3 9.2E-05 2E-09 71.3 1.0 46 126-175 644-690 (698)
52 KOG4172 Predicted E3 ubiquitin 97.2 9.3E-05 2E-09 48.5 0.2 47 125-175 7-55 (62)
53 KOG0801 Predicted E3 ubiquitin 97.1 0.00013 2.7E-09 58.3 0.6 31 122-153 174-204 (205)
54 PF11789 zf-Nse: Zinc-finger o 97.1 0.00029 6.2E-09 47.0 1.8 42 124-168 10-53 (57)
55 KOG0824 Predicted E3 ubiquitin 97.1 0.00029 6.2E-09 61.4 2.0 48 125-176 7-55 (324)
56 KOG4159 Predicted E3 ubiquitin 97.0 0.00034 7.3E-09 63.8 2.0 50 123-176 82-131 (398)
57 KOG0297 TNF receptor-associate 96.9 0.00067 1.4E-08 62.0 3.2 52 123-177 19-70 (391)
58 KOG1941 Acetylcholine receptor 96.9 0.0003 6.4E-09 63.3 0.7 45 125-170 365-412 (518)
59 KOG1428 Inhibitor of type V ad 96.9 0.00076 1.7E-08 68.9 3.2 66 109-175 3470-3545(3738)
60 PF12906 RINGv: RING-variant d 96.7 0.00075 1.6E-08 43.2 1.5 40 128-169 1-47 (47)
61 PHA02862 5L protein; Provision 96.6 0.0015 3.2E-08 51.3 2.7 48 125-176 2-55 (156)
62 PHA02825 LAP/PHD finger-like p 96.4 0.0027 5.9E-08 50.6 3.2 50 123-176 6-61 (162)
63 PF10367 Vps39_2: Vacuolar sor 96.4 0.0016 3.4E-08 48.1 1.5 32 124-157 77-108 (109)
64 KOG1952 Transcription factor N 96.4 0.0017 3.7E-08 63.4 1.9 53 122-174 188-247 (950)
65 KOG1571 Predicted E3 ubiquitin 96.3 0.0026 5.6E-08 56.8 2.6 45 123-174 303-347 (355)
66 KOG0826 Predicted E3 ubiquitin 96.2 0.014 3E-07 51.6 6.7 46 123-171 298-343 (357)
67 PHA03096 p28-like protein; Pro 96.0 0.0035 7.6E-08 54.9 1.8 36 126-161 179-218 (284)
68 KOG1002 Nucleotide excision re 95.9 0.0029 6.2E-08 59.1 1.1 48 123-174 534-586 (791)
69 KOG1814 Predicted E3 ubiquitin 95.7 0.0052 1.1E-07 55.8 1.6 37 124-161 183-219 (445)
70 KOG2660 Locus-specific chromos 95.7 0.0028 6.1E-08 55.9 -0.1 51 123-176 13-63 (331)
71 COG5222 Uncharacterized conser 95.6 0.0095 2.1E-07 52.1 2.8 44 125-171 274-318 (427)
72 KOG3039 Uncharacterized conser 95.5 0.013 2.9E-07 49.9 3.2 53 124-176 220-272 (303)
73 COG5152 Uncharacterized conser 95.4 0.0078 1.7E-07 49.7 1.5 44 125-172 196-239 (259)
74 KOG2879 Predicted E3 ubiquitin 95.3 0.025 5.5E-07 48.9 4.5 52 122-176 236-289 (298)
75 PF14570 zf-RING_4: RING/Ubox 95.3 0.016 3.4E-07 37.2 2.4 45 128-173 1-47 (48)
76 PF08746 zf-RING-like: RING-li 95.2 0.0089 1.9E-07 37.4 1.1 41 128-169 1-43 (43)
77 KOG0827 Predicted E3 ubiquitin 95.0 0.0011 2.3E-08 59.7 -4.9 52 124-176 195-247 (465)
78 COG5236 Uncharacterized conser 94.9 0.038 8.2E-07 49.4 4.6 63 106-172 42-106 (493)
79 PF14446 Prok-RING_1: Prokaryo 94.7 0.046 9.9E-07 35.9 3.4 35 124-158 4-38 (54)
80 KOG4692 Predicted E3 ubiquitin 94.6 0.042 9.1E-07 49.2 4.1 49 123-175 420-468 (489)
81 KOG3268 Predicted E3 ubiquitin 94.5 0.022 4.8E-07 46.4 1.9 30 146-175 189-229 (234)
82 KOG2114 Vacuolar assembly/sort 94.3 0.023 4.9E-07 55.9 1.8 40 126-171 841-880 (933)
83 KOG4739 Uncharacterized protei 94.2 0.017 3.8E-07 48.9 0.7 43 127-173 5-47 (233)
84 KOG4185 Predicted E3 ubiquitin 94.0 0.037 8E-07 48.3 2.5 47 126-173 4-54 (296)
85 KOG1813 Predicted E3 ubiquitin 93.5 0.038 8.2E-07 48.3 1.5 46 125-174 241-286 (313)
86 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.097 2.1E-06 45.2 3.9 52 123-175 111-162 (260)
87 KOG2034 Vacuolar sorting prote 93.1 0.042 9.2E-07 54.2 1.4 36 123-160 815-850 (911)
88 PF15050 SCIMP: SCIMP protein 93.0 0.22 4.7E-06 38.0 4.8 31 49-79 7-37 (133)
89 KOG1940 Zn-finger protein [Gen 92.1 0.07 1.5E-06 46.5 1.3 50 125-176 158-208 (276)
90 KOG4275 Predicted E3 ubiquitin 91.9 0.031 6.8E-07 48.8 -1.1 43 125-174 300-342 (350)
91 KOG1001 Helicase-like transcri 91.9 0.061 1.3E-06 52.5 0.7 47 126-177 455-503 (674)
92 PF10272 Tmpp129: Putative tra 91.8 0.16 3.6E-06 45.8 3.3 28 147-174 311-351 (358)
93 COG5175 MOT2 Transcriptional r 91.3 0.17 3.6E-06 45.3 2.8 54 122-176 11-66 (480)
94 PF14447 Prok-RING_4: Prokaryo 91.0 0.095 2.1E-06 34.5 0.8 44 126-175 8-51 (55)
95 KOG0309 Conserved WD40 repeat- 90.8 0.12 2.6E-06 50.5 1.5 23 146-168 1047-1069(1081)
96 KOG1609 Protein involved in mR 90.7 0.16 3.4E-06 44.3 2.1 51 125-176 78-136 (323)
97 KOG3161 Predicted E3 ubiquitin 90.0 0.071 1.5E-06 51.1 -0.7 43 126-171 12-54 (861)
98 KOG0802 E3 ubiquitin ligase [P 89.6 0.19 4.1E-06 47.9 1.8 49 122-178 476-524 (543)
99 KOG0298 DEAD box-containing he 89.4 0.086 1.9E-06 54.1 -0.7 45 125-172 1153-1197(1394)
100 PF13901 DUF4206: Domain of un 88.3 0.41 8.9E-06 39.8 2.7 42 124-171 151-197 (202)
101 KOG2932 E3 ubiquitin ligase in 87.7 0.22 4.7E-06 44.0 0.8 44 126-174 91-134 (389)
102 KOG0825 PHD Zn-finger protein 85.3 0.55 1.2E-05 46.3 2.2 55 125-179 96-159 (1134)
103 COG5220 TFB3 Cdk activating ki 84.6 0.43 9.2E-06 40.8 1.0 46 125-170 10-60 (314)
104 TIGR00622 ssl1 transcription f 84.3 1.7 3.7E-05 32.8 4.0 46 125-170 55-110 (112)
105 KOG2817 Predicted E3 ubiquitin 84.1 0.91 2E-05 41.3 2.9 44 125-169 334-380 (394)
106 PF05290 Baculo_IE-1: Baculovi 84.1 0.79 1.7E-05 35.7 2.2 53 124-176 79-134 (140)
107 KOG4362 Transcriptional regula 83.2 0.26 5.7E-06 47.8 -0.9 48 125-176 21-71 (684)
108 COG5183 SSM4 Protein involved 82.8 1.1 2.3E-05 44.5 2.9 53 123-176 10-68 (1175)
109 PF07975 C1_4: TFIIH C1-like d 82.4 0.74 1.6E-05 29.9 1.2 42 128-170 2-50 (51)
110 KOG3800 Predicted E3 ubiquitin 82.2 1.3 2.8E-05 38.8 2.9 47 127-174 2-51 (300)
111 smart00132 LIM Zinc-binding do 81.5 1.6 3.5E-05 25.2 2.5 38 127-174 1-38 (39)
112 KOG3053 Uncharacterized conser 81.4 0.73 1.6E-05 39.7 1.1 51 123-174 18-82 (293)
113 PF07800 DUF1644: Protein of u 81.4 2 4.3E-05 34.4 3.5 36 125-161 2-47 (162)
114 smart00249 PHD PHD zinc finger 81.0 1.4 3.1E-05 26.4 2.2 31 127-158 1-31 (47)
115 KOG1812 Predicted E3 ubiquitin 80.1 0.76 1.6E-05 42.0 0.9 38 124-162 145-183 (384)
116 PF01102 Glycophorin_A: Glycop 80.1 3.2 6.9E-05 31.9 4.2 23 51-73 66-88 (122)
117 KOG3002 Zn finger protein [Gen 79.1 1.6 3.5E-05 38.6 2.6 44 125-174 48-91 (299)
118 KOG0269 WD40 repeat-containing 78.9 1.3 2.8E-05 43.5 2.1 41 126-168 780-820 (839)
119 PF00628 PHD: PHD-finger; Int 78.6 1.2 2.6E-05 28.1 1.3 44 127-171 1-50 (51)
120 PF03854 zf-P11: P-11 zinc fin 77.9 0.75 1.6E-05 29.4 0.1 30 147-176 18-48 (50)
121 PF02439 Adeno_E3_CR2: Adenovi 77.9 6.5 0.00014 23.9 4.2 30 51-81 5-34 (38)
122 KOG3899 Uncharacterized conser 76.8 1.4 3.1E-05 38.7 1.6 30 147-176 325-367 (381)
123 KOG1829 Uncharacterized conser 74.6 1.2 2.5E-05 42.8 0.5 44 123-170 509-557 (580)
124 KOG3005 GIY-YIG type nuclease 73.9 2 4.4E-05 37.2 1.7 49 125-173 182-242 (276)
125 PF02060 ISK_Channel: Slow vol 73.1 8.1 0.00018 29.8 4.7 14 4-17 9-22 (129)
126 PF13719 zinc_ribbon_5: zinc-r 72.2 2.2 4.7E-05 25.6 1.1 26 127-152 4-36 (37)
127 KOG4718 Non-SMC (structural ma 71.7 2 4.4E-05 36.0 1.2 45 124-171 180-224 (235)
128 PF00412 LIM: LIM domain; Int 71.6 2.4 5.3E-05 27.2 1.4 39 128-176 1-39 (58)
129 PF01708 Gemini_mov: Geminivir 71.0 7.8 0.00017 28.1 3.9 12 39-50 23-34 (91)
130 PF03229 Alpha_GJ: Alphavirus 70.9 12 0.00026 28.4 5.1 36 47-83 81-117 (126)
131 KOG2066 Vacuolar assembly/sort 70.6 1.8 3.8E-05 42.8 0.7 43 125-169 784-830 (846)
132 KOG1100 Predicted E3 ubiquitin 69.4 2.5 5.5E-05 35.3 1.3 40 128-175 161-201 (207)
133 PF15176 LRR19-TM: Leucine-ric 67.4 17 0.00037 26.9 5.1 26 51-76 16-41 (102)
134 PF06679 DUF1180: Protein of u 66.2 17 0.00038 29.3 5.5 31 51-81 92-122 (163)
135 PF13717 zinc_ribbon_4: zinc-r 66.2 4.1 8.9E-05 24.2 1.5 26 127-152 4-36 (36)
136 PF12877 DUF3827: Domain of un 66.0 7.6 0.00017 37.7 3.9 26 51-76 268-293 (684)
137 PF01102 Glycophorin_A: Glycop 65.7 10 0.00022 29.1 3.8 37 47-83 58-94 (122)
138 PF01363 FYVE: FYVE zinc finge 64.1 2.5 5.3E-05 28.5 0.2 37 124-160 8-44 (69)
139 cd00065 FYVE FYVE domain; Zinc 63.7 6.5 0.00014 25.2 2.2 35 126-160 3-37 (57)
140 KOG1815 Predicted E3 ubiquitin 63.7 4.8 0.0001 37.4 2.1 37 123-162 68-104 (444)
141 KOG4367 Predicted Zn-finger pr 63.5 3.4 7.3E-05 38.4 1.0 34 124-161 3-36 (699)
142 smart00064 FYVE Protein presen 61.2 8 0.00017 25.8 2.4 36 125-160 10-45 (68)
143 PF02009 Rifin_STEVOR: Rifin/s 59.9 15 0.00032 32.6 4.3 12 65-76 271-282 (299)
144 PF14979 TMEM52: Transmembrane 59.9 32 0.00069 27.3 5.7 30 50-81 20-50 (154)
145 PF10571 UPF0547: Uncharacteri 57.3 6.4 0.00014 21.8 1.1 23 127-151 2-24 (26)
146 KOG3842 Adaptor protein Pellin 55.9 14 0.0003 33.0 3.5 53 123-176 339-416 (429)
147 PF05568 ASFV_J13L: African sw 55.1 28 0.0006 27.7 4.7 10 15-24 5-14 (189)
148 cd00350 rubredoxin_like Rubred 54.2 9.5 0.00021 22.1 1.5 20 146-171 6-25 (33)
149 KOG2807 RNA polymerase II tran 54.0 16 0.00034 32.8 3.5 62 109-171 313-375 (378)
150 KOG3039 Uncharacterized conser 53.6 8.1 0.00018 33.3 1.6 33 125-161 43-75 (303)
151 KOG3113 Uncharacterized conser 53.0 13 0.00028 32.2 2.7 51 124-176 110-160 (293)
152 PF14991 MLANA: Protein melan- 52.7 2.3 5E-05 32.1 -1.6 22 61-82 30-51 (118)
153 PRK00523 hypothetical protein; 51.2 46 0.00099 23.1 4.7 15 62-76 15-29 (72)
154 PHA02849 putative transmembran 50.9 42 0.00091 23.7 4.5 27 51-77 15-42 (82)
155 COG3763 Uncharacterized protei 50.9 48 0.001 22.9 4.7 21 56-76 8-28 (71)
156 PF07649 C1_3: C1-like domain; 50.4 15 0.00033 20.6 2.0 29 127-156 2-30 (30)
157 PRK01844 hypothetical protein; 49.5 46 0.00099 23.1 4.5 16 61-76 13-28 (72)
158 PF11023 DUF2614: Protein of u 49.3 15 0.00032 27.8 2.2 23 160-182 82-104 (114)
159 PF15330 SIT: SHP2-interacting 48.5 26 0.00057 26.2 3.5 18 55-72 3-20 (107)
160 PF06844 DUF1244: Protein of u 47.0 12 0.00026 25.5 1.3 12 150-161 11-22 (68)
161 smart00647 IBR In Between Ring 46.9 6.6 0.00014 25.5 0.0 22 138-159 37-58 (64)
162 KOG1812 Predicted E3 ubiquitin 46.7 9 0.00019 35.1 0.9 44 125-169 306-351 (384)
163 PF02009 Rifin_STEVOR: Rifin/s 45.6 25 0.00055 31.1 3.5 26 54-79 257-282 (299)
164 PF06906 DUF1272: Protein of u 45.6 44 0.00094 22.1 3.7 49 126-177 6-55 (57)
165 KOG0956 PHD finger protein AF1 44.8 10 0.00022 37.3 1.0 51 123-174 115-182 (900)
166 PF06143 Baculo_11_kDa: Baculo 43.8 43 0.00093 24.0 3.8 23 51-73 35-57 (84)
167 PF08114 PMP1_2: ATPase proteo 43.3 21 0.00047 22.0 1.9 23 53-75 11-33 (43)
168 PRK05978 hypothetical protein; 43.2 15 0.00034 29.1 1.6 24 148-176 42-65 (148)
169 PF08374 Protocadherin: Protoc 43.1 28 0.00061 29.4 3.2 46 28-76 18-63 (221)
170 PF13314 DUF4083: Domain of un 42.8 89 0.0019 20.8 4.9 26 51-76 5-30 (58)
171 COG1545 Predicted nucleic-acid 42.8 15 0.00033 28.6 1.6 23 143-173 31-53 (140)
172 PF15050 SCIMP: SCIMP protein 42.6 37 0.00079 26.1 3.5 25 55-79 9-33 (133)
173 PF04423 Rad50_zn_hook: Rad50 42.4 7.1 0.00015 25.2 -0.3 14 165-178 22-35 (54)
174 PF14311 DUF4379: Domain of un 41.9 20 0.00042 23.1 1.7 24 145-169 32-55 (55)
175 PF13832 zf-HC5HC2H_2: PHD-zin 41.9 22 0.00048 26.0 2.3 35 124-159 54-88 (110)
176 KOG1538 Uncharacterized conser 41.9 13 0.00029 36.5 1.3 36 139-174 1042-1077(1081)
177 PF10717 ODV-E18: Occlusion-de 41.8 48 0.001 23.7 3.8 12 51-62 25-36 (85)
178 PF04710 Pellino: Pellino; In 41.7 8.7 0.00019 35.2 0.0 51 124-175 327-402 (416)
179 COG5109 Uncharacterized conser 41.4 20 0.00044 32.0 2.2 43 126-169 337-382 (396)
180 KOG2041 WD40 repeat protein [G 40.6 24 0.00051 35.2 2.7 48 122-173 1128-1184(1189)
181 KOG3637 Vitronectin receptor, 40.6 27 0.00058 36.2 3.3 32 51-82 978-1009(1030)
182 KOG2068 MOT2 transcription fac 40.5 26 0.00056 31.4 2.8 47 125-172 249-296 (327)
183 KOG2071 mRNA cleavage and poly 39.6 18 0.00038 34.9 1.7 35 123-159 511-556 (579)
184 PHA02657 hypothetical protein; 39.5 66 0.0014 23.2 4.2 30 47-76 21-51 (95)
185 KOG1729 FYVE finger containing 39.1 4.1 9E-05 35.8 -2.4 38 126-164 215-252 (288)
186 PF07282 OrfB_Zn_ribbon: Putat 39.1 29 0.00063 23.1 2.3 34 125-158 28-63 (69)
187 PF05961 Chordopox_A13L: Chord 38.5 84 0.0018 21.5 4.4 14 58-71 8-21 (68)
188 PF10577 UPF0560: Uncharacteri 38.2 82 0.0018 31.7 6.0 21 53-73 273-293 (807)
189 PF15179 Myc_target_1: Myc tar 37.3 78 0.0017 26.1 4.8 7 70-76 40-46 (197)
190 PF11057 Cortexin: Cortexin of 37.2 38 0.00081 23.8 2.6 8 70-77 43-50 (81)
191 KOG4323 Polycomb-like PHD Zn-f 37.0 19 0.00041 33.8 1.5 48 125-172 168-224 (464)
192 PLN02189 cellulose synthase 36.9 36 0.00078 35.1 3.5 50 125-174 34-87 (1040)
193 PF02891 zf-MIZ: MIZ/SP-RING z 36.4 47 0.001 21.1 2.8 39 127-171 4-49 (50)
194 PF07406 NICE-3: NICE-3 protei 36.3 73 0.0016 26.2 4.7 16 153-168 126-143 (186)
195 PF02318 FYVE_2: FYVE-type zin 36.0 25 0.00053 26.5 1.7 35 124-158 53-88 (118)
196 KOG1815 Predicted E3 ubiquitin 35.7 13 0.00029 34.5 0.2 39 124-162 225-267 (444)
197 PF05454 DAG1: Dystroglycan (D 34.7 13 0.00028 32.8 0.0 19 7-25 87-105 (290)
198 smart00531 TFIIE Transcription 34.7 38 0.00082 26.5 2.6 15 164-178 124-138 (147)
199 PF01299 Lamp: Lysosome-associ 34.5 36 0.00078 29.9 2.8 17 51-67 272-288 (306)
200 TIGR01477 RIFIN variant surfac 34.4 58 0.0013 29.6 4.0 9 68-76 328-336 (353)
201 PF03107 C1_2: C1 domain; Int 34.3 29 0.00062 19.5 1.4 29 127-156 2-30 (30)
202 PF11446 DUF2897: Protein of u 33.0 64 0.0014 21.2 3.1 16 50-65 3-18 (55)
203 PF03119 DNA_ligase_ZBD: NAD-d 32.9 17 0.00037 20.4 0.3 14 165-178 1-14 (28)
204 cd00730 rubredoxin Rubredoxin; 32.4 37 0.0008 21.8 1.8 12 126-137 2-13 (50)
205 PTZ00046 rifin; Provisional 32.4 64 0.0014 29.3 4.0 8 69-76 334-341 (358)
206 PF14569 zf-UDP: Zinc-binding 32.0 55 0.0012 23.1 2.8 51 124-174 8-62 (80)
207 PHA03240 envelope glycoprotein 31.4 60 0.0013 27.5 3.4 28 52-80 214-241 (258)
208 PF09723 Zn-ribbon_8: Zinc rib 31.2 10 0.00022 23.2 -0.9 25 146-171 10-34 (42)
209 PF05191 ADK_lid: Adenylate ki 31.0 22 0.00047 21.2 0.6 32 142-175 2-33 (36)
210 PRK11827 hypothetical protein; 30.1 17 0.00038 24.3 0.0 20 157-176 2-21 (60)
211 PHA02947 S-S bond formation pa 30.0 69 0.0015 27.0 3.5 28 53-80 180-207 (215)
212 KOG2979 Protein involved in DN 29.8 31 0.00067 29.9 1.5 41 125-168 176-218 (262)
213 PLN02436 cellulose synthase A 29.8 55 0.0012 34.0 3.4 50 125-174 36-89 (1094)
214 KOG1512 PHD Zn-finger protein 29.7 25 0.00053 31.1 0.9 32 126-158 315-346 (381)
215 PF06024 DUF912: Nucleopolyhed 29.2 24 0.00053 25.9 0.7 11 54-64 66-76 (101)
216 PF09680 Tiny_TM_bacill: Prote 29.1 72 0.0016 17.3 2.3 14 49-62 5-18 (24)
217 PF10661 EssA: WXG100 protein 28.9 91 0.002 24.6 3.9 19 58-76 125-143 (145)
218 KOG4443 Putative transcription 28.7 28 0.00061 34.0 1.1 52 125-176 18-75 (694)
219 PF14654 Epiglycanin_C: Mucin, 28.6 1.8E+02 0.0038 21.6 5.0 26 51-76 20-45 (106)
220 PF10497 zf-4CXXC_R1: Zinc-fin 28.4 65 0.0014 23.9 2.9 24 148-171 37-69 (105)
221 COG5627 MMS21 DNA repair prote 28.4 31 0.00067 29.6 1.2 40 125-167 189-230 (275)
222 PF07010 Endomucin: Endomucin; 28.1 1.5E+02 0.0033 25.3 5.3 19 56-74 197-215 (259)
223 PF13771 zf-HC5HC2H: PHD-like 27.6 44 0.00094 23.3 1.8 33 125-158 36-68 (90)
224 PTZ00046 rifin; Provisional 27.5 84 0.0018 28.6 3.9 25 57-83 319-343 (358)
225 PF05502 Dynactin_p62: Dynacti 27.3 33 0.00072 32.4 1.4 15 125-139 26-40 (483)
226 PF00558 Vpu: Vpu protein; In 27.3 91 0.002 22.2 3.3 6 100-105 58-63 (81)
227 PHA03049 IMV membrane protein; 27.3 1.5E+02 0.0033 20.2 4.2 15 58-72 8-22 (68)
228 PF04277 OAD_gamma: Oxaloaceta 26.9 2.1E+02 0.0045 19.4 6.8 8 55-62 9-16 (79)
229 PF14169 YdjO: Cold-inducible 26.9 32 0.00069 23.0 0.9 16 162-177 38-53 (59)
230 PF04906 Tweety: Tweety; Inte 26.6 1E+02 0.0022 28.4 4.4 17 63-79 33-49 (406)
231 TIGR01477 RIFIN variant surfac 26.6 89 0.0019 28.4 3.9 25 57-83 314-338 (353)
232 PF02960 K1: K1 glycoprotein; 26.3 1E+02 0.0022 23.4 3.5 33 47-79 67-99 (130)
233 PF09943 DUF2175: Uncharacteri 26.2 49 0.0011 24.5 1.8 33 126-160 3-35 (101)
234 KOG4185 Predicted E3 ubiquitin 25.8 11 0.00023 32.8 -2.0 49 125-173 207-266 (296)
235 PF03672 UPF0154: Uncharacteri 25.6 98 0.0021 21.0 3.0 6 71-76 16-21 (64)
236 KOG3799 Rab3 effector RIM1 and 25.4 19 0.00041 28.2 -0.5 59 123-182 63-128 (169)
237 COG4068 Uncharacterized protei 25.3 40 0.00087 22.5 1.1 17 162-178 7-23 (64)
238 COG4847 Uncharacterized protei 25.2 49 0.0011 24.3 1.6 35 125-161 6-40 (103)
239 KOG0955 PHD finger protein BR1 25.2 35 0.00076 35.3 1.2 56 122-178 216-272 (1051)
240 PRK04778 septation ring format 25.0 98 0.0021 29.7 4.1 20 55-74 6-25 (569)
241 TIGR01732 tiny_TM_bacill conse 24.9 93 0.002 17.2 2.3 15 48-62 6-20 (26)
242 KOG4577 Transcription factor L 24.5 27 0.00058 30.9 0.2 36 123-160 90-125 (383)
243 KOG4430 Topoisomerase I-bindin 24.3 34 0.00074 32.8 0.9 54 123-176 258-311 (553)
244 PRK11088 rrmA 23S rRNA methylt 24.3 53 0.0011 28.0 2.0 26 126-152 3-28 (272)
245 PF15065 NCU-G1: Lysosomal tra 24.1 59 0.0013 29.5 2.3 26 51-76 318-343 (350)
246 PF07438 DUF1514: Protein of u 23.9 82 0.0018 21.4 2.4 13 53-65 2-14 (66)
247 PF06422 PDR_CDR: CDR ABC tran 23.7 1.3E+02 0.0028 22.0 3.8 16 51-66 51-66 (103)
248 PHA02662 ORF131 putative membr 23.4 1E+02 0.0022 26.1 3.4 21 61-81 196-216 (226)
249 TIGR00686 phnA alkylphosphonat 23.2 60 0.0013 24.4 1.8 25 126-151 3-29 (109)
250 PF15353 HECA: Headcase protei 23.0 47 0.001 24.9 1.2 13 147-159 40-52 (107)
251 PF07213 DAP10: DAP10 membrane 22.9 2.5E+02 0.0054 19.9 4.8 18 45-62 26-43 (79)
252 PF07191 zinc-ribbons_6: zinc- 22.8 20 0.00044 24.8 -0.7 41 126-175 2-42 (70)
253 PF14584 DUF4446: Protein of u 22.7 1.7E+02 0.0036 23.2 4.4 35 108-144 81-115 (151)
254 PF02480 Herpes_gE: Alphaherpe 22.7 28 0.00062 32.4 0.0 19 64-82 364-382 (439)
255 PLN02248 cellulose synthase-li 22.7 1E+02 0.0023 32.2 3.9 30 147-176 150-179 (1135)
256 PF06305 DUF1049: Protein of u 22.6 1.6E+02 0.0036 19.2 3.8 18 50-67 20-37 (68)
257 PF08274 PhnA_Zn_Ribbon: PhnA 22.4 43 0.00093 19.2 0.7 25 126-150 3-28 (30)
258 PF05715 zf-piccolo: Piccolo Z 22.2 43 0.00093 22.4 0.8 13 163-175 2-14 (61)
259 PF07423 DUF1510: Protein of u 21.7 91 0.002 26.3 2.8 8 51-58 17-24 (217)
260 COG3492 Uncharacterized protei 21.6 44 0.00094 24.4 0.8 13 149-161 41-53 (104)
261 PF07245 Phlebovirus_G2: Phleb 21.5 1.2E+02 0.0027 28.9 4.0 24 53-76 471-494 (507)
262 PHA03099 epidermal growth fact 21.5 1E+02 0.0022 24.0 2.8 15 62-76 112-126 (139)
263 TIGR01478 STEVOR variant surfa 21.4 1.4E+02 0.003 26.4 3.9 7 70-76 280-286 (295)
264 PRK03564 formate dehydrogenase 20.7 48 0.001 29.5 1.0 42 124-171 186-234 (309)
265 PF06750 DiS_P_DiS: Bacterial 20.7 1.2E+02 0.0027 21.8 3.0 39 125-176 33-71 (92)
266 KOG3352 Cytochrome c oxidase, 20.3 61 0.0013 25.8 1.4 7 127-134 113-119 (153)
267 TIGR02098 MJ0042_CXXC MJ0042 f 20.3 91 0.002 18.1 1.9 9 127-135 4-12 (38)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-21 Score=171.63 Aligned_cols=79 Identities=32% Similarity=0.814 Sum_probs=68.9
Q ss_pred CCCCCCHHHHhcCCcccccccccCCCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC-CCcccccccccc
Q 046833 98 KSSGIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS-SCPKCRHCLIET 176 (218)
Q Consensus 98 ~~~g~~~~~l~~lp~~~~~~~~~~~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~ 176 (218)
...++.++.++++|...|......... ..|+||||+|++||++|+|| |+|.||..|||.||..+. .||+||+++...
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 456788999999999999987765444 79999999999999999999 999999999999997775 499999988766
Q ss_pred cc
Q 046833 177 CE 178 (218)
Q Consensus 177 ~~ 178 (218)
..
T Consensus 281 ~~ 282 (348)
T KOG4628|consen 281 SG 282 (348)
T ss_pred CC
Confidence 44
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.63 E-value=8.3e-17 Score=102.11 Aligned_cols=44 Identities=55% Similarity=1.241 Sum_probs=40.5
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (218)
++|+||+++|.+++.+..++ |||.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999998 999999999999999999999998
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.8e-14 Score=121.79 Aligned_cols=52 Identities=48% Similarity=1.112 Sum_probs=47.3
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-cCCCCccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 175 (218)
+.+.+|+|||++|-++|++++|| |+|.||..|+++|+. -+..||+||..+++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 44589999999999999999999 999999999999997 45679999999876
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.45 E-value=8.5e-14 Score=117.96 Aligned_cols=75 Identities=32% Similarity=0.662 Sum_probs=57.1
Q ss_pred CCCCHHHHhcCCccccccccc-CCCCCCcCcccCCCCCCCC----ceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 100 SGIQQESLRDFPVVNYSTELK-LSGSDTECVICLSEFAPGE----SLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 100 ~g~~~~~l~~lp~~~~~~~~~-~~~~~~~CaICL~ef~~~~----~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
++..++.+..+|.+....... ....+.+|+||++++.+++ .+.+++.|+|.||..||..|++.+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 445677788889887554322 2234689999999987643 13455559999999999999999999999999765
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.40 E-value=1.8e-13 Score=96.05 Aligned_cols=47 Identities=38% Similarity=0.944 Sum_probs=36.3
Q ss_pred CCCCcCcccCCCCCCC----------CceeecCCCCcccChhHHHHHHhcCCCCcccc
Q 046833 123 GSDTECVICLSEFAPG----------ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~----------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (218)
..++.|+||+++|.+. -.+...+ |||.||..||..||+.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3356699999999322 2344444 999999999999999999999998
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.1e-12 Score=113.85 Aligned_cols=56 Identities=39% Similarity=0.965 Sum_probs=45.9
Q ss_pred CCCCCcCcccCCC-CCCC---------CceeecCCCCcccChhHHHHHHhcCCCCcccccccccccc
Q 046833 122 SGSDTECVICLSE-FAPG---------ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCE 178 (218)
Q Consensus 122 ~~~~~~CaICL~e-f~~~---------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (218)
...+..|+||+++ |+.+ .+...|| |||+||-+|+..|+.++++||+||.++.-...
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~~ 349 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccccC
Confidence 3557789999999 5544 2456788 99999999999999999999999999654433
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-11 Score=103.06 Aligned_cols=51 Identities=27% Similarity=0.706 Sum_probs=44.1
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
......|.+||+..++ ..-+| |||+||+.||..|...+..||+||....+.
T Consensus 236 ~~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3456789999998755 56788 999999999999999999999999987765
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.12 E-value=1.1e-10 Score=95.58 Aligned_cols=50 Identities=36% Similarity=0.774 Sum_probs=40.7
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc----------------CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS----------------HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----------------~~tCP~CR~~l~~~ 176 (218)
.++.+|+||++.+.+ ..+++ |||.||+.||..|+.. +..||+||..+...
T Consensus 16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 456889999999855 45676 9999999999999842 34799999988664
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.11 E-value=6.7e-11 Score=73.63 Aligned_cols=44 Identities=55% Similarity=1.210 Sum_probs=37.0
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCccccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCL 173 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l 173 (218)
+|+||++.+ .+.+...+ |||.||..|++.|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34555665 9999999999999987 77899999764
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.09 E-value=7.5e-11 Score=76.62 Aligned_cols=46 Identities=35% Similarity=0.843 Sum_probs=39.4
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
+..|.||++...+ +..+| |||. |+..|+..|++.+..||+||+.+.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998654 77888 9999 999999999999999999999874
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.04 E-value=1.5e-10 Score=82.74 Aligned_cols=52 Identities=42% Similarity=0.885 Sum_probs=39.9
Q ss_pred CCCcCcccCCCCCC--------CCc-eeecCCCCcccChhHHHHHHhc---CCCCccccccccc
Q 046833 124 SDTECVICLSEFAP--------GES-LRVLPKCNHGFHVHCIDKWLRS---HSSCPKCRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~--------~~~-vr~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~~ 175 (218)
.++.|.||...|+. |+. ..++.+|+|.||-.||.+|+.. +.+||+||+...-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 36789999999952 232 3345569999999999999964 4689999997653
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.04 E-value=1.4e-10 Score=71.49 Aligned_cols=39 Identities=44% Similarity=1.086 Sum_probs=32.7
Q ss_pred CcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccc
Q 046833 128 CVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKC 169 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~C 169 (218)
|+||++++.+ .+..++ |||.|+.+||..|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998866 446776 99999999999999888899998
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.2e-10 Score=93.36 Aligned_cols=52 Identities=29% Similarity=0.687 Sum_probs=40.7
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC---CCCccccccccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH---SSCPKCRHCLIETC 177 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~~ 177 (218)
++...+|.|||+.-+ |.| ++. |||.|||-||.+||..+ +.||+||..+..+.
T Consensus 44 ~~~~FdCNICLd~ak--dPV-vTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK--DPV-VTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred CCCceeeeeeccccC--CCE-Eee-cccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence 466789999999843 344 554 99999999999999643 45899999877663
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.8e-09 Score=102.03 Aligned_cols=54 Identities=39% Similarity=0.943 Sum_probs=46.6
Q ss_pred CCCCcCcccCCCCCCCCc--eeecCCCCcccChhHHHHHHhcCCCCccccccccccc
Q 046833 123 GSDTECVICLSEFAPGES--LRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETC 177 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~--vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (218)
..+..|+||++++..+++ ...+| |+|+||..|+..|++++.+||.||..+....
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 346789999999988766 67888 9999999999999999999999999555443
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.93 E-value=6.6e-10 Score=92.37 Aligned_cols=52 Identities=33% Similarity=0.785 Sum_probs=39.5
Q ss_pred CCCCcCcccCCCCCCC-----CceeecCCCCcccChhHHHHHHhcC------CCCcccccccc
Q 046833 123 GSDTECVICLSEFAPG-----ESLRVLPKCNHGFHVHCIDKWLRSH------SSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~-----~~vr~lp~C~H~FH~~CI~~Wl~~~------~tCP~CR~~l~ 174 (218)
..+.+|+||||..-+. ..--+|+.|+|.||..||..|.+.+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4468999999987432 1234676799999999999998653 35999998654
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.92 E-value=1e-09 Score=69.43 Aligned_cols=44 Identities=30% Similarity=0.771 Sum_probs=38.7
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
+|.||+++|.+....++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999996667788887 9999999999999866778999984
No 17
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.88 E-value=9.4e-10 Score=77.08 Aligned_cols=50 Identities=38% Similarity=0.864 Sum_probs=38.8
Q ss_pred CcCcccCCCC-----------CCCCc-eeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 126 TECVICLSEF-----------APGES-LRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef-----------~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
+.|+||...| ..+++ ......|+|.||..||.+||..+..||++|+..+-
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 5677777666 23333 34455699999999999999999999999997653
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.5e-09 Score=87.23 Aligned_cols=62 Identities=26% Similarity=0.559 Sum_probs=47.2
Q ss_pred ccccccccCCCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 113 VNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 113 ~~~~~~~~~~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
..+......+..-..|+|||+.+.+... +-.+|||+||+.||..-++....||+||..|.++
T Consensus 119 ~~k~v~~~~~~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 119 RDKDVDPLRKEGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccccccccccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3333333334556889999999876433 4346999999999999999999999999877654
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.83 E-value=3.3e-09 Score=63.63 Aligned_cols=38 Identities=50% Similarity=1.222 Sum_probs=32.6
Q ss_pred CcccCCCCCCCCceeecCCCCcccChhHHHHHHh-cCCCCccc
Q 046833 128 CVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-SHSSCPKC 169 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~C 169 (218)
|+||++.. .....++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 4577887 999999999999997 66679987
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.81 E-value=2.2e-09 Score=66.52 Aligned_cols=39 Identities=44% Similarity=1.130 Sum_probs=32.8
Q ss_pred CcccCCCCCCCCceeecCCCCcccChhHHHHHHh--cCCCCccc
Q 046833 128 CVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR--SHSSCPKC 169 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCP~C 169 (218)
|+||++.+.+. +++++ |||.|+..||..|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998653 35776 999999999999998 55679998
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.72 E-value=8.5e-09 Score=64.64 Aligned_cols=38 Identities=39% Similarity=0.983 Sum_probs=28.9
Q ss_pred CcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCccc
Q 046833 128 CVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKC 169 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~C 169 (218)
|+||++-|.+ ...++ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999966 67787 99999999999999543 369987
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.68 E-value=2.5e-08 Score=67.22 Aligned_cols=45 Identities=29% Similarity=0.489 Sum_probs=39.2
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
..|+||++.+.+ ..+++ |||+|...||..|++.+.+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 469999999876 34677 9999999999999988899999998774
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.2e-08 Score=91.39 Aligned_cols=50 Identities=32% Similarity=0.814 Sum_probs=39.4
Q ss_pred CCcCcccCCCCCCCC--------------ceeecCCCCcccChhHHHHHHh-cCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGE--------------SLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~--------------~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~ 175 (218)
..+|+||+.+++-.. ...++| |+|+||..|+..|.. .+-.||+||..|++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 467999999983211 122567 999999999999998 55599999999875
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.7e-08 Score=86.00 Aligned_cols=49 Identities=33% Similarity=0.788 Sum_probs=41.0
Q ss_pred CCCcCcccCCCCCCCC-------ceeecCCCCcccChhHHHHHH--hcCCCCccccccc
Q 046833 124 SDTECVICLSEFAPGE-------SLRVLPKCNHGFHVHCIDKWL--RSHSSCPKCRHCL 173 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~-------~vr~lp~C~H~FH~~CI~~Wl--~~~~tCP~CR~~l 173 (218)
++..|+||-..+.... +.-.|. |+|+||..||.-|- .++++||.|+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHh
Confidence 4678999999986654 667787 99999999999996 5778999997654
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.5e-09 Score=73.05 Aligned_cols=51 Identities=41% Similarity=0.889 Sum_probs=38.2
Q ss_pred CCCcCcccCCCCCC--------CC-ceeecCCCCcccChhHHHHHHhc---CCCCcccccccc
Q 046833 124 SDTECVICLSEFAP--------GE-SLRVLPKCNHGFHVHCIDKWLRS---HSSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~~--------~~-~vr~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~ 174 (218)
.++.|-||.-.|+. || ...++..|.|.||..||.+|+.. +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34589999988843 22 23355569999999999999953 456999998754
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=4.3e-08 Score=88.89 Aligned_cols=49 Identities=31% Similarity=0.631 Sum_probs=41.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
.....|+||++.|.+ ..+++ |||.||..||..|+..+..||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 445789999999855 34677 99999999999999888899999997764
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.50 E-value=1.1e-07 Score=61.49 Aligned_cols=42 Identities=29% Similarity=0.781 Sum_probs=32.5
Q ss_pred cCcccCCCCCCCCceeecCCCC-----cccChhHHHHHHhc--CCCCcccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCN-----HGFHVHCIDKWLRS--HSSCPKCR 170 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR 170 (218)
.|.||+++. +++...+.| |. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999943 444555788 85 99999999999954 44899995
No 28
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.9e-08 Score=71.71 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=38.2
Q ss_pred CCCcCcccCCCC-------------CCCCceeecCCCCcccChhHHHHHHhcCCCCcccccc
Q 046833 124 SDTECVICLSEF-------------APGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHC 172 (218)
Q Consensus 124 ~~~~CaICL~ef-------------~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (218)
.-+.|+||...+ ..++.......|+|.||-.||.+||+.+..||+|-+.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 456799987655 2234445555799999999999999999999999664
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.5e-08 Score=81.58 Aligned_cols=50 Identities=30% Similarity=0.710 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHH-HHhcCCC-Ccccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDK-WLRSHSS-CPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~-Wl~~~~t-CP~CR~~l~~~ 176 (218)
..+..|+||+++... ...++ |||+|++.||.. |-+++.. ||+||+...++
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 346889999998654 56777 999999999999 9876665 99999987765
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.43 E-value=6.9e-08 Score=87.36 Aligned_cols=51 Identities=35% Similarity=0.867 Sum_probs=42.0
Q ss_pred CCCCcCcccCCCCCCCC-ceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGE-SLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.+-+.|+||||.++..- .++... |+|.||..|+..| ...+||+||....+.
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~p~ 224 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQSPS 224 (493)
T ss_pred ccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcCcc
Confidence 35678999999997765 345555 9999999999999 667899999988754
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=1.8e-07 Score=58.90 Aligned_cols=38 Identities=39% Similarity=0.871 Sum_probs=22.4
Q ss_pred CcccCCCCCCCC-ceeecCCCCcccChhHHHHHHhcC----CCCc
Q 046833 128 CVICLSEFAPGE-SLRVLPKCNHGFHVHCIDKWLRSH----SSCP 167 (218)
Q Consensus 128 CaICL~ef~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP 167 (218)
|+||.+ |.+.+ ...+|+ |||+|..+||+.|++.. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75544 457898 99999999999999743 3576
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.29 E-value=1.8e-07 Score=65.09 Aligned_cols=50 Identities=32% Similarity=0.727 Sum_probs=23.8
Q ss_pred CCcCcccCCCCCCCCc--eeecC--CCCcccChhHHHHHHhc---C--------CCCcccccccc
Q 046833 125 DTECVICLSEFAPGES--LRVLP--KCNHGFHVHCIDKWLRS---H--------SSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~--vr~lp--~C~H~FH~~CI~~Wl~~---~--------~tCP~CR~~l~ 174 (218)
+.+|.||.+.+.+++. ..+.+ +|++.||..|+.+||.. . .+||.|+..|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 3689999998763332 23443 69999999999999952 1 13999998775
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.6e-07 Score=83.35 Aligned_cols=50 Identities=30% Similarity=0.535 Sum_probs=38.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-----CCCCcccccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-----HSSCPKCRHCLIETCE 178 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~~l~~~~~ 178 (218)
+..|+|||++... -..+ .|||+||..||-.++.. ...||+||..+..+.-
T Consensus 186 ~~~CPICL~~~~~---p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCc---cccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 6789999998543 2233 39999999999999843 3579999998877533
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.24 E-value=2e-07 Score=90.66 Aligned_cols=51 Identities=33% Similarity=0.802 Sum_probs=38.6
Q ss_pred CCCcCcccCCCCCCCC---ceeecCCCCcccChhHHHHHHhc--CCCCcccccccc
Q 046833 124 SDTECVICLSEFAPGE---SLRVLPKCNHGFHVHCIDKWLRS--HSSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~---~vr~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~ 174 (218)
+..|||||...+..-| .-..++.|.|.||..|+.+|++. +.+||+||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 5689999998875212 11234569999999999999965 457999998764
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=2.2e-06 Score=75.16 Aligned_cols=51 Identities=29% Similarity=0.584 Sum_probs=37.6
Q ss_pred CCcCcccCCCCCCCC--ceeecCCCCcccChhHHHHHH-hcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGE--SLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~--~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 176 (218)
+..|+||+.+--... ++-+.+ |||.||..||+..+ .....||.|+..+-..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 467999999633222 333335 99999999999966 4456899999887755
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.6e-06 Score=73.46 Aligned_cols=44 Identities=36% Similarity=0.837 Sum_probs=38.8
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (218)
.+...|+||++.|.+. .++| |+|.|+..||..|+.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 4567899999999875 7888 999999999999988556799999
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=4.2e-06 Score=74.16 Aligned_cols=52 Identities=40% Similarity=0.697 Sum_probs=43.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCcccccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIETCE 178 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (218)
++..+|.|||++-.+ +.+|| |.|. .|..|.+.---++..||+||+.+.+.-+
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELLE 340 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhhe
Confidence 457899999999755 78999 9996 7888998876678899999999877644
No 38
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.01 E-value=4.6e-06 Score=58.30 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=37.0
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (218)
...|+|+.+-+.+ ..++| +||.|-..||..|++. +.+||+|+..+...
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 3579999999866 66788 9999999999999988 88999999887754
No 39
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.98 E-value=3e-06 Score=73.17 Aligned_cols=49 Identities=31% Similarity=0.573 Sum_probs=40.3
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.-..|-||-+-|.. ...++ |||.||.-||...|..+..||+||.+..+.
T Consensus 24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 34679999887744 33455 999999999999999999999999976554
No 40
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.8e-06 Score=75.03 Aligned_cols=48 Identities=33% Similarity=0.852 Sum_probs=34.8
Q ss_pred CcCcccCCCCCCC-CceeecCCCCcccChhHHHHHHhc---CCCCcccccccc
Q 046833 126 TECVICLSEFAPG-ESLRVLPKCNHGFHVHCIDKWLRS---HSSCPKCRHCLI 174 (218)
Q Consensus 126 ~~CaICL~ef~~~-~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~ 174 (218)
.+|.|| +++.+. ..+.-...|||+||..|+..|+.. ..+||.||-.+.
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 589999 555443 344444459999999999999953 357999994433
No 41
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.90 E-value=3.3e-06 Score=74.29 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=41.9
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
-..|-||.+=|.. ..++| |+|.||.-||..+|..+..||.|+..+.|.
T Consensus 23 lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 4579999998855 45677 999999999999999999999999987765
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.87 E-value=3.3e-06 Score=73.18 Aligned_cols=53 Identities=32% Similarity=0.778 Sum_probs=45.0
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-----------------------cCCCCcccccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----------------------SHSSCPKCRHCLIETCE 178 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----------------------~~~tCP~CR~~l~~~~~ 178 (218)
...|+|||--|.+++...+++ |.|.||..|+..+|. .+..||+||..|..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 468999999999999999998 999999999998873 12249999999887654
No 43
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=9.3e-06 Score=73.02 Aligned_cols=48 Identities=38% Similarity=0.875 Sum_probs=38.1
Q ss_pred CCCcCcccCCCCC-CCCceeecCCCCcccChhHHHHHHhc--CCCCccccc
Q 046833 124 SDTECVICLSEFA-PGESLRVLPKCNHGFHVHCIDKWLRS--HSSCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~ef~-~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~ 171 (218)
....|+|||+++. .+++..+.+.|||.|-.+||..||.+ ...||.|..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 3568999999996 55665566679999999999999942 336999965
No 44
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.2e-05 Score=67.28 Aligned_cols=56 Identities=25% Similarity=0.642 Sum_probs=47.1
Q ss_pred CCCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc--------CCCCcccccccccccc
Q 046833 121 LSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS--------HSSCPKCRHCLIETCE 178 (218)
Q Consensus 121 ~~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~~~~~ 178 (218)
.++....|..|-..+..+|.+|.. |-|+||++|+++|-.+ ...||.|...+++.-+
T Consensus 46 DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred hcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 345667899999999999999987 9999999999999742 3469999999887643
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.8e-05 Score=69.50 Aligned_cols=51 Identities=39% Similarity=0.906 Sum_probs=39.3
Q ss_pred CCCCcCcccCCCCCCCC----ceeecCCCCcccChhHHHHHH--hc-----CCCCccccccc
Q 046833 123 GSDTECVICLSEFAPGE----SLRVLPKCNHGFHVHCIDKWL--RS-----HSSCPKCRHCL 173 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~----~vr~lp~C~H~FH~~CI~~Wl--~~-----~~tCP~CR~~l 173 (218)
..+.+|.||++...+.. ...++|.|.|.|+..||..|- .+ .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 44789999999875533 123567899999999999997 33 46799999853
No 46
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.54 E-value=1.1e-05 Score=77.47 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=42.0
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
....|++||..+.++...-.-+ |+|.||..||+.|-+.-.+||+||..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4457888888887766555555 99999999999999999999999986554
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=7.4e-06 Score=72.44 Aligned_cols=50 Identities=36% Similarity=0.693 Sum_probs=41.8
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-cCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 176 (218)
.+..|+|||+-++. .+.++.|.|-||.+||..-++ .+.+||.||..+...
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 46789999998755 556678999999999999995 567899999988765
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.50 E-value=2.6e-05 Score=52.85 Aligned_cols=46 Identities=28% Similarity=0.585 Sum_probs=22.5
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
-.|++|.+-+.+ ...+..|.|+|+..||..-+.. .||+|+.+--..
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence 469999988744 3344469999999999886543 499998865444
No 49
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.46 E-value=4e-05 Score=59.44 Aligned_cols=35 Identities=20% Similarity=0.565 Sum_probs=30.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCC------cccChhHHHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLPKCN------HGFHVHCIDKWL 160 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~------H~FH~~CI~~Wl 160 (218)
..||+||++.+.+++.++.++ || |.||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 579999999999877787777 75 999999999994
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.33 E-value=0.00011 Score=66.16 Aligned_cols=49 Identities=29% Similarity=0.718 Sum_probs=40.2
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc--CCCCcccccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS--HSSCPKCRHCLIETCE 178 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~~~ 178 (218)
.-|-||-+. +..|++-| |||..|..|+..|-.. ..+||.||..+...+.
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 569999876 34588888 9999999999999733 5689999998876654
No 51
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=9.2e-05 Score=71.28 Aligned_cols=46 Identities=26% Similarity=0.721 Sum_probs=36.5
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHH-hcCCCCccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~ 175 (218)
-.|++|-..+.+ + ++++|+|+||..||..-+ .++..||.|-..+-.
T Consensus 644 LkCs~Cn~R~Kd---~-vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---A-VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred eeCCCccCchhh---H-HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 579999877644 3 334699999999999999 577889999877654
No 52
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=9.3e-05 Score=48.46 Aligned_cols=47 Identities=28% Similarity=0.584 Sum_probs=30.8
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHH-hcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWL-RSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl-~~~~tCP~CR~~l~~ 175 (218)
++||.||++.-- +.+..+ |||. .+-+|-.+-+ ..+..||+||+++.+
T Consensus 7 ~dECTICye~pv--dsVlYt--CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPV--DSVLYT--CGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcc--hHHHHH--cchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 479999998732 333333 9997 2334443333 367799999997653
No 53
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00013 Score=58.27 Aligned_cols=31 Identities=35% Similarity=0.838 Sum_probs=28.0
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccCh
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHV 153 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~ 153 (218)
.+...||.||||+++.+++|..|| |-.+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 345679999999999999999999 9999997
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.09 E-value=0.00029 Score=46.98 Aligned_cols=42 Identities=26% Similarity=0.612 Sum_probs=27.1
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc--CCCCcc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS--HSSCPK 168 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCP~ 168 (218)
....|+|.+..|++ .++-. +|||+|-++.|..|++. ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35689999999864 45555 59999999999999943 446998
No 55
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00029 Score=61.38 Aligned_cols=48 Identities=29% Similarity=0.569 Sum_probs=38.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (218)
..+|+||+..- .....++ |+|.|+-.||.-=.+. ..+|++||..+.+.
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCcccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 46899999874 3345666 9999999999987754 45799999988765
No 56
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00034 Score=63.84 Aligned_cols=50 Identities=38% Similarity=0.883 Sum_probs=42.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
..+.+|.||..-+.+ ...+| |||.|+..||++-+.....||.||..+.+.
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCcccccccccc
Confidence 456899999888755 66778 999999999999888777899999999864
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.92 E-value=0.00067 Score=62.00 Aligned_cols=52 Identities=29% Similarity=0.620 Sum_probs=42.0
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETC 177 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (218)
+.+..|++|...+.+.-.. +. |||.|+..|+..|+..+..||.|+..+....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchhh
Confidence 4567899999998663222 34 9999999999999999999999988776553
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.90 E-value=0.0003 Score=63.29 Aligned_cols=45 Identities=38% Similarity=0.932 Sum_probs=37.5
Q ss_pred CCcCcccCCCCCC-CCceeecCCCCcccChhHHHHHHhcC--CCCcccc
Q 046833 125 DTECVICLSEFAP-GESLRVLPKCNHGFHVHCIDKWLRSH--SSCPKCR 170 (218)
Q Consensus 125 ~~~CaICL~ef~~-~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR 170 (218)
+--|-.|-+.+.. ++.+.-|| |.|+||..|+.+.|.++ .+||.||
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4579999998864 35677898 99999999999999654 4799999
No 59
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.85 E-value=0.00076 Score=68.93 Aligned_cols=66 Identities=26% Similarity=0.600 Sum_probs=48.7
Q ss_pred cCCcccccccccCCCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----------CCCccccccccc
Q 046833 109 DFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----------SSCPKCRHCLIE 175 (218)
Q Consensus 109 ~lp~~~~~~~~~~~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----------~tCP~CR~~l~~ 175 (218)
-+|.+....+....+.++.|.||..|--.....+.|. |+|+||-+|...-|.+. -+||+|+..+..
T Consensus 3470 CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3555555444445677899999998876666778886 99999999998765432 259999987653
No 60
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.75 E-value=0.00075 Score=43.16 Aligned_cols=40 Identities=33% Similarity=0.894 Sum_probs=26.8
Q ss_pred CcccCCCCCCCCceeecCCCC-----cccChhHHHHHHh--cCCCCccc
Q 046833 128 CVICLSEFAPGESLRVLPKCN-----HGFHVHCIDKWLR--SHSSCPKC 169 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~-----H~FH~~CI~~Wl~--~~~tCP~C 169 (218)
|-||+++-.+++ .-+.| |+ -..|..|+..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999877655 33455 53 4789999999995 45679887
No 61
>PHA02862 5L protein; Provisional
Probab=96.64 E-value=0.0015 Score=51.26 Aligned_cols=48 Identities=19% Similarity=0.470 Sum_probs=34.7
Q ss_pred CCcCcccCCCCCCCCceeecC-CC---CcccChhHHHHHHh--cCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLP-KC---NHGFHVHCIDKWLR--SHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp-~C---~H~FH~~CI~~Wl~--~~~tCP~CR~~l~~~ 176 (218)
++.|-||+++-++ .+ -| .| ...-|.+|+.+|++ ++..|+.|+....-+
T Consensus 2 ~diCWIC~~~~~e--~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDE--RN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCC--Cc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 3679999998533 33 44 13 36889999999995 345799999976543
No 62
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.45 E-value=0.0027 Score=50.61 Aligned_cols=50 Identities=24% Similarity=0.552 Sum_probs=35.2
Q ss_pred CCCCcCcccCCCCCCCCceeecC-CCCc---ccChhHHHHHHhc--CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLP-KCNH---GFHVHCIDKWLRS--HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp-~C~H---~FH~~CI~~Wl~~--~~tCP~CR~~l~~~ 176 (218)
..+.+|-||.++-. +.. .| +|.. .-|.+|+..|+.. ..+|+.|+....-.
T Consensus 6 ~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45679999998843 222 34 2444 6699999999954 45799998876533
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.40 E-value=0.0016 Score=48.06 Aligned_cols=32 Identities=31% Similarity=0.770 Sum_probs=27.0
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHH
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCID 157 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~ 157 (218)
.+..|++|-..+.. ....+.| |||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 35679999999977 5677888 99999999975
No 64
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.35 E-value=0.0017 Score=63.36 Aligned_cols=53 Identities=34% Similarity=0.756 Sum_probs=40.4
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC-------CCCcccccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH-------SSCPKCRHCLI 174 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-------~tCP~CR~~l~ 174 (218)
.....+|.||++.+...+.+=-...|-|+||-.||..|.++. -.||.|.....
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 345689999999997766654444589999999999998542 14999985443
No 65
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0026 Score=56.77 Aligned_cols=45 Identities=29% Similarity=0.613 Sum_probs=34.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
...+.|.||+++..+ ...+| |||+=+ |...- +...+||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 446789999999766 77888 999944 77665 33445999998764
No 66
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.014 Score=51.60 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=36.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
.....|+||+...++ +.+-.+ -|-+||-.||..++.++..||+=-.
T Consensus 298 ~~~~~CpvClk~r~N-ptvl~v--SGyVfCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN-PTVLEV--SGYVFCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred CccccChhHHhccCC-CceEEe--cceEEeHHHHHHHHHhcCCCCccCC
Confidence 445689999998766 333232 6999999999999999999998544
No 67
>PHA03096 p28-like protein; Provisional
Probab=95.98 E-value=0.0035 Score=54.89 Aligned_cols=36 Identities=28% Similarity=0.703 Sum_probs=29.3
Q ss_pred CcCcccCCCCCCCC----ceeecCCCCcccChhHHHHHHh
Q 046833 126 TECVICLSEFAPGE----SLRVLPKCNHGFHVHCIDKWLR 161 (218)
Q Consensus 126 ~~CaICL~ef~~~~----~vr~lp~C~H~FH~~CI~~Wl~ 161 (218)
.+|.||++...... .--.|+.|.|.|+..||..|-.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 68999999986532 2346888999999999999974
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.94 E-value=0.0029 Score=59.11 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=37.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-----cCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----SHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l~ 174 (218)
.+..+|-+|-++-++ ..+.. |.|.||+.||.+++. .+-+||+|...|.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 456789999987433 55665 999999999999973 3568999977654
No 69
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0052 Score=55.77 Aligned_cols=37 Identities=30% Similarity=0.744 Sum_probs=32.9
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR 161 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~ 161 (218)
.-..|.||.++....+.+..+| |+|+|++.|+..++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHH
Confidence 3578999999987778889999 999999999999984
No 70
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.67 E-value=0.0028 Score=55.90 Aligned_cols=51 Identities=25% Similarity=0.628 Sum_probs=41.0
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.....|.+|-.=|-+...|. .|-|.||+.||...|....+||.|...+-..
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34578999988876644432 4999999999999999999999998866544
No 71
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.58 E-value=0.0095 Score=52.11 Aligned_cols=44 Identities=30% Similarity=0.703 Sum_probs=34.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH-hcCCCCccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRH 171 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~ 171 (218)
...|+.|-.-+.+ .+ .+|.|+|.|+.+||..-| .....||.|.+
T Consensus 274 ~LkCplc~~Llrn--p~-kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRN--PM-KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhC--cc-cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 3679999877644 23 347799999999999887 56788999954
No 72
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.013 Score=49.89 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=47.8
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+||.+.+.+...+.+|..|||+|..+|+.+.+.....||+|-.++.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 35789999999999888888888999999999999999999999998887766
No 73
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.38 E-value=0.0078 Score=49.73 Aligned_cols=44 Identities=23% Similarity=0.527 Sum_probs=37.0
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHC 172 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (218)
...|.||-.+|+. .+++. |||.||..|...=++....|-+|-..
T Consensus 196 PF~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchh
Confidence 4589999999965 44565 99999999999988999999999653
No 74
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.025 Score=48.86 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=37.7
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh--cCCCCcccccccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR--SHSSCPKCRHCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCP~CR~~l~~~ 176 (218)
...+.+|++|-+.=. ...... +|+|+||=-||..=+. ...+||.|-....+-
T Consensus 236 ~t~~~~C~~Cg~~Pt--iP~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPT--IPHVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccCCceeeccCCCCC--CCeeec-cccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 456789999977632 223344 4999999999998764 346899997766544
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.28 E-value=0.016 Score=37.20 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=20.1
Q ss_pred CcccCCCCCCCC-ceeecCCCCcccChhHHHHHHh-cCCCCccccccc
Q 046833 128 CVICLSEFAPGE-SLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCL 173 (218)
Q Consensus 128 CaICL~ef~~~~-~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l 173 (218)
|++|.+++...+ ...-.+ ||+..+..|...-+. ....||-||...
T Consensus 1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994433 333343 777777777666554 466899999863
No 76
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.21 E-value=0.0089 Score=37.44 Aligned_cols=41 Identities=32% Similarity=0.793 Sum_probs=23.1
Q ss_pred CcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC--CCccc
Q 046833 128 CVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS--SCPKC 169 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCP~C 169 (218)
|.+|-+-...|...... .|+=.+|..|++.+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777766665544433 4999999999999996655 79988
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.0011 Score=59.71 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=45.1
Q ss_pred CCCcCcccCCCCCCC-CceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPG-ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+||.+.+... +++..+- |||++|..||.+||.....||.||+.|...
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 356799999999876 7788886 999999999999998888999999987643
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.92 E-value=0.038 Score=49.36 Aligned_cols=63 Identities=24% Similarity=0.466 Sum_probs=44.1
Q ss_pred HHhcCCcccccccccCCCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHH--HhcCCCCcccccc
Q 046833 106 SLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW--LRSHSSCPKCRHC 172 (218)
Q Consensus 106 ~l~~lp~~~~~~~~~~~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W--l~~~~tCP~CR~~ 172 (218)
.+..-|...-+......++...|.||-+.+. ...++| |+|..+..|-..- |-..+.||+||..
T Consensus 42 nlsaEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 42 NLSAEPNLTTSSADDTDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccCCccccccccccccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3334455444444444556677999988763 367888 9999999997664 4567889999973
No 79
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.71 E-value=0.046 Score=35.91 Aligned_cols=35 Identities=29% Similarity=0.800 Sum_probs=30.8
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHH
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
....|.+|-+.|.+++.+.+.|.|+=.+|..|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34679999999999999999999999999999543
No 80
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.042 Score=49.20 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=41.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
.++..|+||...- ..-...| |+|.=|..||.+.+.+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~p---i~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 5678899998752 2344677 99999999999999999999999998775
No 81
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.022 Score=46.36 Aligned_cols=30 Identities=33% Similarity=0.953 Sum_probs=23.7
Q ss_pred CCCcccChhHHHHHHhc----C-------CCCccccccccc
Q 046833 146 KCNHGFHVHCIDKWLRS----H-------SSCPKCRHCLIE 175 (218)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~----~-------~tCP~CR~~l~~ 175 (218)
.||.-||.-|+..||+. . ..||.|..++.-
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 49999999999999953 1 149999877653
No 82
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=0.023 Score=55.85 Aligned_cols=40 Identities=28% Similarity=0.844 Sum_probs=30.6
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
..|..|-..++- ..... .|||.||.+|+. .+...||.|+.
T Consensus 841 skCs~C~~~Ldl--P~VhF-~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHF-LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCcccc--ceeee-ecccHHHHHhhc---cCcccCCccch
Confidence 579999877643 22333 399999999998 46678999988
No 83
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.20 E-value=0.017 Score=48.93 Aligned_cols=43 Identities=26% Similarity=0.728 Sum_probs=32.1
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCL 173 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (218)
-|-.|.- +..++...++. |+|+||..|...- ....||.||.++
T Consensus 5 hCn~C~~-~~~~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFR-FPSQDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSI 47 (233)
T ss_pred Eeccccc-cCCCCceeeee-chhhhhhhhcccC--Ccccccccccee
Confidence 4776654 34478888887 9999999997763 222899999974
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.037 Score=48.34 Aligned_cols=47 Identities=34% Similarity=0.760 Sum_probs=38.0
Q ss_pred CcCcccCCCCCCCCc---eeecCCCCcccChhHHHHHHhcC-CCCccccccc
Q 046833 126 TECVICLSEFAPGES---LRVLPKCNHGFHVHCIDKWLRSH-SSCPKCRHCL 173 (218)
Q Consensus 126 ~~CaICL~ef~~~~~---vr~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l 173 (218)
.+|-||-++|..++. .|+|. |||.|+..|+..-+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 589999999987643 46664 99999999999877544 4699999984
No 85
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.038 Score=48.26 Aligned_cols=46 Identities=28% Similarity=0.435 Sum_probs=37.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
...|-||...|.. .+++ +|+|.|+..|-..-++....|.+|-+..-
T Consensus 241 Pf~c~icr~~f~~---pVvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Ccccccccccccc---chhh-cCCceeehhhhccccccCCcceecccccc
Confidence 4569999999966 3355 49999999999998888899999976543
No 86
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.36 E-value=0.097 Score=45.21 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=41.3
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
.....|+|...+|........+..|||+|-..+|..- .....||+|-.++.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 5567899999999766666666559999999999996 335679999877653
No 87
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=0.042 Score=54.24 Aligned_cols=36 Identities=25% Similarity=0.609 Sum_probs=29.0
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL 160 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
+.++.|.+|--.+... .-.+.| |||.||++||.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 3467899998888664 455777 99999999998875
No 88
>PF15050 SCIMP: SCIMP protein
Probab=93.02 E-value=0.22 Score=37.97 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046833 49 HFNVVMFFSILISAVVCSLGFHFLIRCVFLR 79 (218)
Q Consensus 49 ~f~viiil~ill~~li~~l~l~~i~rc~~~r 79 (218)
+|.+|+.++|+++.+++.+++++++|+.+++
T Consensus 7 nFWiiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777777777777777777778877433
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.08 E-value=0.07 Score=46.47 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=40.5
Q ss_pred CCcCcccCCCCCCCCc-eeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGES-LRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+||.+.+-.... +..++ |||.-|..|+.+....+.+||+|.. +.+.
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 4459999998876654 56676 9999999999999988899999988 4433
No 90
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.031 Score=48.77 Aligned_cols=43 Identities=26% Similarity=0.653 Sum_probs=29.3
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
..-|+||++.-. ....|+ |||.. .|...= +.-..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmV--tCt~CG-krm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMV--TCTKCG-KRMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEE--eehhhc-cccccCchHHHHHH
Confidence 567999998743 377898 99973 343221 12237999998765
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.87 E-value=0.061 Score=52.50 Aligned_cols=47 Identities=34% Similarity=0.753 Sum_probs=37.0
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc--CCCCccccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS--HSSCPKCRHCLIETC 177 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~~ 177 (218)
..|.||++ .+.....+ |+|.|+..|+..-+.. ...||.||..+.+..
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 34455665 9999999999988743 235999999887663
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.77 E-value=0.16 Score=45.84 Aligned_cols=28 Identities=32% Similarity=0.959 Sum_probs=20.5
Q ss_pred CCcccChhHHHHHHhc-------------CCCCcccccccc
Q 046833 147 CNHGFHVHCIDKWLRS-------------HSSCPKCRHCLI 174 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~-------------~~tCP~CR~~l~ 174 (218)
|.-.+|.+|+.+|+.+ +-.||.||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4455678999999842 235999999754
No 93
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.30 E-value=0.17 Score=45.27 Aligned_cols=54 Identities=17% Similarity=0.484 Sum_probs=36.1
Q ss_pred CCCCCcCcccCCCCCCCCc-eeecCCCCcccChhHHHHHH-hcCCCCcccccccccc
Q 046833 122 SGSDTECVICLSEFAPGES-LRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRHCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~-vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 176 (218)
+++++.|+.|+++++-.|+ ..-.| ||-..|.-|-..-- .-+..||-||+..-++
T Consensus 11 edeed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3556679999999976654 34455 88766666644322 2345799999976544
No 94
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.03 E-value=0.095 Score=34.51 Aligned_cols=44 Identities=30% Similarity=0.530 Sum_probs=31.2
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
..|..|... +.+-.++| |+|+....|.+-+ +-.-||.|-..+..
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 345555543 33455788 9999999998875 56679999776643
No 95
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.81 E-value=0.12 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.973 Sum_probs=21.1
Q ss_pred CCCcccChhHHHHHHhcCCCCcc
Q 046833 146 KCNHGFHVHCIDKWLRSHSSCPK 168 (218)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~tCP~ 168 (218)
.|+|+-|..|..+|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 39999999999999999999984
No 96
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.69 E-value=0.16 Score=44.35 Aligned_cols=51 Identities=27% Similarity=0.716 Sum_probs=37.5
Q ss_pred CCcCcccCCCCCCCCc-eeecCCCC-----cccChhHHHHHHh--cCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGES-LRVLPKCN-----HGFHVHCIDKWLR--SHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~-vr~lp~C~-----H~FH~~CI~~Wl~--~~~tCP~CR~~l~~~ 176 (218)
+..|-||..+...... .-..| |. +..|..|++.|+. ....|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5789999998765432 33455 53 7779999999996 566799998865544
No 97
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.071 Score=51.10 Aligned_cols=43 Identities=30% Similarity=0.604 Sum_probs=32.4
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
..|.||+.+|-...-.-+...|||..+..|+..- -+.+|| |++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 4699999998765544344459999999999884 567888 655
No 98
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.56 E-value=0.19 Score=47.89 Aligned_cols=49 Identities=35% Similarity=0.832 Sum_probs=40.8
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCE 178 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (218)
....+.|.||+.+. ..+..+ |. |..|+.+|+..+..||.|+..+.....
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 45568899999987 456666 88 999999999999999999998877644
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.40 E-value=0.086 Score=54.07 Aligned_cols=45 Identities=29% Similarity=0.698 Sum_probs=37.0
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHC 172 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (218)
...|.||++.+...-.+ . .|||.++..|+..|+..+..||.|+..
T Consensus 1153 ~~~c~ic~dil~~~~~I-~--~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGI-A--GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred ccchHHHHHHHHhcCCe-e--eechhHhhhHHHHHHHHhccCcchhhh
Confidence 45899999988653322 3 299999999999999999999999843
No 100
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=88.26 E-value=0.41 Score=39.83 Aligned_cols=42 Identities=38% Similarity=0.821 Sum_probs=31.4
Q ss_pred CCCcCcccCCC-----CCCCCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 124 SDTECVICLSE-----FAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~e-----f~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
.+..|-+|-++ |+. +.+...++|+-+||..|.. +..||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 46789999753 333 4667788899999999966 267999943
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.71 E-value=0.22 Score=43.99 Aligned_cols=44 Identities=27% Similarity=0.574 Sum_probs=29.6
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
.-|--|=-.+ ...-|+.| |+|+||-+|-.. ...+.||.|-..+.
T Consensus 91 HfCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 3476664332 33447888 999999999654 34568999865443
No 102
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.34 E-value=0.55 Score=46.26 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=39.0
Q ss_pred CCcCcccCCCCCC---CCceeecCCCCcccChhHHHHHHh------cCCCCccccccccccccc
Q 046833 125 DTECVICLSEFAP---GESLRVLPKCNHGFHVHCIDKWLR------SHSSCPKCRHCLIETCEE 179 (218)
Q Consensus 125 ~~~CaICL~ef~~---~~~vr~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR~~l~~~~~~ 179 (218)
...|.||.-++.+ +-.+-.+..|+|.|+..||..|.. .+-.|+.|.++|..+...
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 4567777777765 223333345999999999999984 344689999998876553
No 103
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.58 E-value=0.43 Score=40.78 Aligned_cols=46 Identities=28% Similarity=0.775 Sum_probs=35.7
Q ss_pred CCcCcccCCCC--CCCCceeecCCCCcccChhHHHHHHhc-CCCCc--ccc
Q 046833 125 DTECVICLSEF--APGESLRVLPKCNHGFHVHCIDKWLRS-HSSCP--KCR 170 (218)
Q Consensus 125 ~~~CaICL~ef--~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP--~CR 170 (218)
+..|+||-.+- .++.++-+-|.|-|-.|..|+|.-+.. ...|| -|-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 56899999885 344456667779999999999999954 55799 663
No 104
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.27 E-value=1.7 Score=32.84 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=35.0
Q ss_pred CCcCcccCCCCCCC----------CceeecCCCCcccChhHHHHHHhcCCCCcccc
Q 046833 125 DTECVICLSEFAPG----------ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 125 ~~~CaICL~ef~~~----------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (218)
...|--|+..|.+. ...-..++|++.|+.+|=.-+-..-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35699999998643 11234678999999999777766667899995
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.09 E-value=0.91 Score=41.32 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=37.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC---CCccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS---SCPKC 169 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCP~C 169 (218)
...|+|=-+.-.++.....|. |||+..++=+++-.++.. .||.|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 357999888888877788887 999999999999876554 69999
No 106
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.07 E-value=0.79 Score=35.65 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=35.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH---hcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL---RSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl---~~~~tCP~CR~~l~~~ 176 (218)
.-.+|.||-|--.+..-+.--..||-..+-.|-..-+ ..+..||+|+.++-..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4589999988765533222222489888887655444 4577899999987644
No 107
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=83.16 E-value=0.26 Score=47.80 Aligned_cols=48 Identities=31% Similarity=0.678 Sum_probs=36.8
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc---CCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS---HSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~~~ 176 (218)
..+|.||+..+... ..+ +|.|.|...|+..-|.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 46899999998664 234 59999999999887643 45799999766544
No 108
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.77 E-value=1.1 Score=44.48 Aligned_cols=53 Identities=25% Similarity=0.561 Sum_probs=38.9
Q ss_pred CCCCcCcccCCCCCCCCceeecC-CCC---cccChhHHHHHHh--cCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLP-KCN---HGFHVHCIDKWLR--SHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp-~C~---H~FH~~CI~~Wl~--~~~tCP~CR~~l~~~ 176 (218)
++...|-||..|=..++.+- -| ||. ...|.+|+.+|+. ....|-+|+..+.-+
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 44578999999877766553 34 243 5689999999994 455699999877654
No 109
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=82.36 E-value=0.74 Score=29.89 Aligned_cols=42 Identities=33% Similarity=0.859 Sum_probs=22.2
Q ss_pred CcccCCCCCCC------CceeecCCCCcccChhHHHHHH-hcCCCCcccc
Q 046833 128 CVICLSEFAPG------ESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCR 170 (218)
Q Consensus 128 CaICL~ef~~~------~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR 170 (218)
|.-|+..|... ...-..|+|++.|+.+| |..+ ..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 55677777654 24556788999999999 4433 3334799883
No 110
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=82.19 E-value=1.3 Score=38.82 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=33.3
Q ss_pred cCcccCCCCC--CCCceeecCCCCcccChhHHHHHHh-cCCCCcccccccc
Q 046833 127 ECVICLSEFA--PGESLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLI 174 (218)
Q Consensus 127 ~CaICL~ef~--~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~ 174 (218)
.|++|-.+.- ++-.+.+-+ |+|-.|..|+|.-+. ....||.|-..|-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 5888877642 222333345 999999999999984 5568999966443
No 111
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=81.53 E-value=1.6 Score=25.24 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=25.9
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
.|+.|-+.+.+++..... =+..||.+| ..|..|...|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 378888888776333332 578999877 56777776653
No 112
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.40 E-value=0.73 Score=39.72 Aligned_cols=51 Identities=27% Similarity=0.701 Sum_probs=34.2
Q ss_pred CCCCcCcccCCCCCCCCce-eecCCC-----CcccChhHHHHHHhcC--------CCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESL-RVLPKC-----NHGFHVHCIDKWLRSH--------SSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~v-r~lp~C-----~H~FH~~CI~~Wl~~~--------~tCP~CR~~l~ 174 (218)
+.+..|=||+.-=+++..- =+-| | .|=.|..|+..|+..+ -+||-|+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4456799999875443221 1334 4 4889999999999322 25999987543
No 113
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=81.37 E-value=2 Score=34.44 Aligned_cols=36 Identities=25% Similarity=0.582 Sum_probs=22.2
Q ss_pred CCcCcccCCCCCCCC---------ceeecCCCCc-ccChhHHHHHHh
Q 046833 125 DTECVICLSEFAPGE---------SLRVLPKCNH-GFHVHCIDKWLR 161 (218)
Q Consensus 125 ~~~CaICL~ef~~~~---------~vr~lp~C~H-~FH~~CI~~Wl~ 161 (218)
+..|+|||+-=.+.- ..|--- |+- .=|..|+|++-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence 568999998754421 122222 543 347899999853
No 114
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.10 E-value=0.76 Score=42.04 Aligned_cols=38 Identities=32% Similarity=0.715 Sum_probs=28.2
Q ss_pred CCCcCcccCCCCCCC-CceeecCCCCcccChhHHHHHHhc
Q 046833 124 SDTECVICLSEFAPG-ESLRVLPKCNHGFHVHCIDKWLRS 162 (218)
Q Consensus 124 ~~~~CaICL~ef~~~-~~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
...+|.||..+.... +...+. +|+|.|+.+|+...+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 356899999554444 445544 59999999999999853
No 116
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.05 E-value=3.2 Score=31.90 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLI 73 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~ 73 (218)
...||++++..++.+++++.+++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444433333
No 117
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=79.13 E-value=1.6 Score=38.58 Aligned_cols=44 Identities=20% Similarity=0.492 Sum_probs=31.9
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
-.+|+||.+.+... +.+.+ =||.-+..|-. +....||.||-.+.
T Consensus 48 lleCPvC~~~l~~P--i~QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP--IFQCD-NGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCccc--ceecC-CCcEehhhhhh---hhcccCCccccccc
Confidence 46899999998552 23322 36888888754 46778999999887
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.86 E-value=1.3 Score=43.51 Aligned_cols=41 Identities=24% Similarity=0.481 Sum_probs=30.5
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPK 168 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~ 168 (218)
..|.+|-..+.. . ....+.|+|.=|.+|+..|+..+.-||.
T Consensus 780 ~~CtVC~~vi~G-~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-V-DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-e-EeecccccccccHHHHHHHHhcCCCCcc
Confidence 468888655432 1 2234569999999999999988888876
No 119
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=78.62 E-value=1.2 Score=28.11 Aligned_cols=44 Identities=23% Similarity=0.544 Sum_probs=30.8
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHh------cCCCCccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR------SHSSCPKCRH 171 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR~ 171 (218)
.|.||.. ..+++.+..-..|+..||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~-~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ-SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS-SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC-cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889988 444455667777999999999876542 1345877753
No 120
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=77.88 E-value=0.75 Score=29.38 Aligned_cols=30 Identities=27% Similarity=0.675 Sum_probs=21.8
Q ss_pred C-CcccChhHHHHHHhcCCCCcccccccccc
Q 046833 147 C-NHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 147 C-~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
| +|..+-.|+..-+.....||+|..+|+..
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 6 59999999999999999999999988753
No 121
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=77.86 E-value=6.5 Score=23.87 Aligned_cols=30 Identities=3% Similarity=0.425 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCVFLRCS 81 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~~~r~~ 81 (218)
.+.+|.+++++++++++.+++ +-|.++|.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~-YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFY-YACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHcccc
Confidence 344555655555555544333 444434443
No 122
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.76 E-value=1.4 Score=38.67 Aligned_cols=30 Identities=20% Similarity=0.594 Sum_probs=23.5
Q ss_pred CCcccChhHHHHHHh-------------cCCCCcccccccccc
Q 046833 147 CNHGFHVHCIDKWLR-------------SHSSCPKCRHCLIET 176 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~-------------~~~tCP~CR~~l~~~ 176 (218)
|.-.++..|+.+|+. .+.+||+||..+.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 677888999999983 245799999977644
No 123
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=74.62 E-value=1.2 Score=42.80 Aligned_cols=44 Identities=27% Similarity=0.744 Sum_probs=27.4
Q ss_pred CCCCcCcccCC-----CCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccc
Q 046833 123 GSDTECVICLS-----EFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCR 170 (218)
Q Consensus 123 ~~~~~CaICL~-----ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR 170 (218)
.....|.+|-. .|+ .++++..-.|+++||+.|... ....||.|-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred cCeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 34567888822 123 233444445999999999554 445599993
No 124
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=73.86 E-value=2 Score=37.22 Aligned_cols=49 Identities=31% Similarity=0.679 Sum_probs=35.7
Q ss_pred CCcCcccCCCCCCCCceee---cCCCCcccChhHHHHHHhc---------CCCCccccccc
Q 046833 125 DTECVICLSEFAPGESLRV---LPKCNHGFHVHCIDKWLRS---------HSSCPKCRHCL 173 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~---lp~C~H~FH~~CI~~Wl~~---------~~tCP~CR~~l 173 (218)
..+|-+|..++.+.+..+. -+.|+-.+|-.|+..-+.. ...||.|+..+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 4699999999955454443 2358899999999995532 23699998843
No 125
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=73.13 E-value=8.1 Score=29.79 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=9.4
Q ss_pred CCCchhHHHHHhhh
Q 046833 4 SSFSSTQLSHDFIG 17 (218)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (218)
.+++-++|+|+++.
T Consensus 9 ~~~~L~~l~q~~~~ 22 (129)
T PF02060_consen 9 LHPFLSKLWQETVQ 22 (129)
T ss_dssp H-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 45677888888754
No 126
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=72.21 E-value=2.2 Score=25.57 Aligned_cols=26 Identities=31% Similarity=0.644 Sum_probs=16.8
Q ss_pred cCcccCCCCCCCCc-------eeecCCCCcccC
Q 046833 127 ECVICLSEFAPGES-------LRVLPKCNHGFH 152 (218)
Q Consensus 127 ~CaICL~ef~~~~~-------vr~lp~C~H~FH 152 (218)
+|+=|-..|...+. ....++|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888754432 234556888875
No 127
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=71.68 E-value=2 Score=35.99 Aligned_cols=45 Identities=27% Similarity=0.711 Sum_probs=34.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
+-..|.+|..-.-.+ + ....||-.+|..|+...+++...||.|-.
T Consensus 180 nlk~Cn~Ch~LvIqg--~-rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--I-RCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhhee--e-ccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 346899998765332 2 23348899999999999999999999944
No 128
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=71.65 E-value=2.4 Score=27.15 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=27.5
Q ss_pred CcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 128 CVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
|+-|-..+.+++.+... -+..||.+| .+|-.|+..|.+.
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 67787887765544333 678899877 5688888887665
No 129
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=70.98 E-value=7.8 Score=28.09 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCh
Q 046833 39 PPPYPAKGCLHF 50 (218)
Q Consensus 39 ~~~~~~~~~~~f 50 (218)
++..+.+++..|
T Consensus 23 p~~~p~ss~~~w 34 (91)
T PF01708_consen 23 PTAAPSSSGLPW 34 (91)
T ss_pred CCCCCCCCCCcc
Confidence 333444566777
No 130
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=70.95 E-value=12 Score=28.45 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccc
Q 046833 47 CLHFNVVMFFSILISAVVCSLGFHF-LIRCVFLRCSRL 83 (218)
Q Consensus 47 ~~~f~viiil~ill~~li~~l~l~~-i~rc~~~r~~~~ 83 (218)
..+|++-++|+-++.+.+.+++... +.||+ +|+-++
T Consensus 81 p~d~aLp~VIGGLcaL~LaamGA~~LLrR~c-Rr~arr 117 (126)
T PF03229_consen 81 PVDFALPLVIGGLCALTLAAMGAGALLRRCC-RRAARR 117 (126)
T ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 3456666677766666666665544 45555 555443
No 131
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.64 E-value=1.8 Score=42.78 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=31.2
Q ss_pred CCcCcccCCCCCCC----CceeecCCCCcccChhHHHHHHhcCCCCccc
Q 046833 125 DTECVICLSEFAPG----ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKC 169 (218)
Q Consensus 125 ~~~CaICL~ef~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~C 169 (218)
+..|.-|.+..-.. +.+.++. |+|+||+.|+.--..++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 35799999887532 4567775 999999999988775554 4433
No 132
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.42 E-value=2.5 Score=35.34 Aligned_cols=40 Identities=28% Similarity=0.615 Sum_probs=28.0
Q ss_pred CcccCCCCCCCCceeecCCCCc-ccChhHHHHHHhcCCCCccccccccc
Q 046833 128 CVICLSEFAPGESLRVLPKCNH-GFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 128 CaICL~ef~~~~~vr~lp~C~H-~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
|-.|-+. +..|-.+| |.| .++..|-.. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 8888765 45688999 976 456667443 4569999876543
No 133
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=67.36 E-value=17 Score=26.90 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~ 76 (218)
.+.+++++++.++++.+.+++.++|-
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444455555555555555556655
No 134
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=66.25 E-value=17 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCVFLRCS 81 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~~~r~~ 81 (218)
.++.-..++++++..++++++++|.++.|.+
T Consensus 92 ~~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 92 PMLKRALYVLVGLSALAILYFVIRTFRLRRR 122 (163)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444444555556666667777787766653
No 135
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=66.24 E-value=4.1 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=16.7
Q ss_pred cCcccCCCCCCCCc-------eeecCCCCcccC
Q 046833 127 ECVICLSEFAPGES-------LRVLPKCNHGFH 152 (218)
Q Consensus 127 ~CaICL~ef~~~~~-------vr~lp~C~H~FH 152 (218)
+|+=|...|..+|. ....++|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 68888888865443 123456888875
No 136
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=65.98 E-value=7.6 Score=37.72 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~ 76 (218)
|+|||+++++.++++++++++++.++
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~L 293 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKL 293 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHH
Confidence 55666666555544444443433333
No 137
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.70 E-value=10 Score=29.15 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 046833 47 CLHFNVVMFFSILISAVVCSLGFHFLIRCVFLRCSRL 83 (218)
Q Consensus 47 ~~~f~viiil~ill~~li~~l~l~~i~rc~~~r~~~~ 83 (218)
..+|..-.|++|+++++..++++++++.++.+|.+++
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567555555555555555555555444443444443
No 138
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=64.12 E-value=2.5 Score=28.51 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=20.1
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL 160 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
+...|.+|...|.--..-.....||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3568999999997655555666799999999976543
No 139
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=63.72 E-value=6.5 Score=25.19 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=26.7
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHH
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL 160 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
..|.+|-..|.....-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 57999999887655445555699999999977654
No 140
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.67 E-value=4.8 Score=37.44 Aligned_cols=37 Identities=27% Similarity=0.638 Sum_probs=30.0
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS 162 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~ 162 (218)
....+|-||.+.+.. .+..+. |+|.|+..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 456789999999866 455555 9999999999999854
No 141
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=63.52 E-value=3.4 Score=38.39 Aligned_cols=34 Identities=26% Similarity=0.624 Sum_probs=27.9
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR 161 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~ 161 (218)
++..|+||-.-|.+ .++|| |+|..+..|-..-+.
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhcc
Confidence 45679999988865 67888 999999999887663
No 142
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=59.94 E-value=15 Score=32.61 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 046833 65 CSLGFHFLIRCV 76 (218)
Q Consensus 65 ~~l~l~~i~rc~ 76 (218)
+.+++++|+|+.
T Consensus 271 IMvIIYLILRYR 282 (299)
T PF02009_consen 271 IMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHH
Confidence 334445555644
No 144
>PF14979 TMEM52: Transmembrane 52
Probab=59.88 E-value=32 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccc
Q 046833 50 FNVVMFFSILISAVVCSLGFHFLIR-CVFLRCS 81 (218)
Q Consensus 50 f~viiil~ill~~li~~l~l~~i~r-c~~~r~~ 81 (218)
|.+++++.+++.++++.+. ...+| |+ +|++
T Consensus 20 WyIwLill~~~llLLCG~t-a~C~rfCC-lrk~ 50 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCGLT-ASCVRFCC-LRKQ 50 (154)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHH-hccc
Confidence 3555555555555555443 33456 66 4443
No 145
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.33 E-value=6.4 Score=21.79 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=14.2
Q ss_pred cCcccCCCCCCCCceeecCCCCccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGF 151 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~F 151 (218)
.|+-|-.++.. ..+..|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 47777776633 234556688877
No 146
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=55.92 E-value=14 Score=33.03 Aligned_cols=53 Identities=25% Similarity=0.549 Sum_probs=36.2
Q ss_pred CCCCcCcccCCCCC---------------CCCc-eeecCCCCcccChhHHHHHHhc---------CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFA---------------PGES-LRVLPKCNHGFHVHCIDKWLRS---------HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~---------------~~~~-vr~lp~C~H~FH~~CI~~Wl~~---------~~tCP~CR~~l~~~ 176 (218)
..+.+|++|+..=. .|-. -...| |||+--..-..-|-+. +..||.|-..|..+
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 44689999997631 1111 12355 9999988899999742 45699998877654
No 147
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=55.14 E-value=28 Score=27.67 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.2
Q ss_pred hhhccchhhh
Q 046833 15 FIGKFHSRKL 24 (218)
Q Consensus 15 ~~~~~~~r~l 24 (218)
|..+.|.|..
T Consensus 5 ffqpvyp~~y 14 (189)
T PF05568_consen 5 FFQPVYPRHY 14 (189)
T ss_pred cccccchhhh
Confidence 4455555543
No 148
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=54.17 E-value=9.5 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=12.4
Q ss_pred CCCcccChhHHHHHHhcCCCCccccc
Q 046833 146 KCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
.|||++-..- ....||+|..
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 3666655432 4457999965
No 149
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=54.03 E-value=16 Score=32.80 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=38.7
Q ss_pred cCCcccccccccC-CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 109 DFPVVNYSTELKL-SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 109 ~lp~~~~~~~~~~-~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
-+|...|...... ......|-.|.++...+...+ ...|.|.|+.+|=.--=..-..||.|-+
T Consensus 313 L~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~-C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 313 LFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYR-CESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred hcCCcchhhccccccCCCcceeeeccccCCCCcEE-chhccceeeccchHHHHhhhhcCCCcCC
Confidence 3455555443222 123445999977776655554 4459999999994433244557999964
No 150
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.63 E-value=8.1 Score=33.30 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=27.5
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR 161 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~ 161 (218)
-+.|+.||..+.+ ..++| =||+|..+||.+++.
T Consensus 43 FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 4679999999866 44666 799999999999984
No 151
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.98 E-value=13 Score=32.21 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=37.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+|=--+|...-....+..|||+|-..-+.+- ...+|++|-..+-+.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 346799988787665555555569999998877774 467899998876543
No 152
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=52.68 E-value=2.3 Score=32.15 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 046833 61 SAVVCSLGFHFLIRCVFLRCSR 82 (218)
Q Consensus 61 ~~li~~l~l~~i~rc~~~r~~~ 82 (218)
.+++++|++.+++-|++.|+++
T Consensus 30 GiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 30 GILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp S---------------------
T ss_pred eeHHHHHHHHHHHhheeeeecc
Confidence 3344445555566666655433
No 153
>PRK00523 hypothetical protein; Provisional
Probab=51.23 E-value=46 Score=23.14 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 046833 62 AVVCSLGFHFLIRCV 76 (218)
Q Consensus 62 ~li~~l~l~~i~rc~ 76 (218)
+++-+++-+++.|..
T Consensus 15 li~G~~~Gffiark~ 29 (72)
T PRK00523 15 LIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444444
No 154
>PHA02849 putative transmembrane protein; Provisional
Probab=50.88 E-value=42 Score=23.69 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=11.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILIS-AVVCSLGFHFLIRCVF 77 (218)
Q Consensus 51 ~viiil~ill~-~li~~l~l~~i~rc~~ 77 (218)
++++++.+++. +.+++..++++.+|.+
T Consensus 15 g~v~vi~v~v~vI~i~~flLlyLvkws~ 42 (82)
T PHA02849 15 GAVTVILVFVLVISFLAFMLLYLIKWSY 42 (82)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333 2333334445566653
No 155
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.86 E-value=48 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046833 56 FSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 56 l~ill~~li~~l~l~~i~rc~ 76 (218)
+.+++++++.+++-+++.|..
T Consensus 8 l~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444445555544
No 156
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=50.39 E-value=15 Score=20.57 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=10.8
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHH
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCI 156 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI 156 (218)
.|.+|-+.... +..-..+.|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 58888888765 344444569999999985
No 157
>PRK01844 hypothetical protein; Provisional
Probab=49.48 E-value=46 Score=23.15 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 046833 61 SAVVCSLGFHFLIRCV 76 (218)
Q Consensus 61 ~~li~~l~l~~i~rc~ 76 (218)
++++-+++-+++.|..
T Consensus 13 ~li~G~~~Gff~ark~ 28 (72)
T PRK01844 13 ALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334444444
No 158
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=49.29 E-value=15 Score=27.84 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=16.5
Q ss_pred HhcCCCCcccccccccccccccC
Q 046833 160 LRSHSSCPKCRHCLIETCEESVG 182 (218)
Q Consensus 160 l~~~~tCP~CR~~l~~~~~~~~~ 182 (218)
+.+...|+.|+++|.-++..+..
T Consensus 82 LGr~D~CM~C~~pLTLd~~legk 104 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTLDPSLEGK 104 (114)
T ss_pred hchhhccCcCCCcCccCchhhcc
Confidence 34556799999999877664443
No 159
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=48.50 E-value=26 Score=26.18 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046833 55 FFSILISAVVCSLGFHFL 72 (218)
Q Consensus 55 il~ill~~li~~l~l~~i 72 (218)
+++|+.+++++++++.++
T Consensus 3 Ll~il~llLll~l~asl~ 20 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLL 20 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444554544443
No 160
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=46.98 E-value=12 Score=25.54 Aligned_cols=12 Identities=50% Similarity=1.342 Sum_probs=8.8
Q ss_pred ccChhHHHHHHh
Q 046833 150 GFHVHCIDKWLR 161 (218)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (218)
.||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999984
No 161
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=46.85 E-value=6.6 Score=25.52 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=16.9
Q ss_pred CCceeecCCCCcccChhHHHHH
Q 046833 138 GESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 138 ~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+......+.|+|.|+..|-..|
T Consensus 37 ~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 37 GCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCeeECCCCCCeECCCCCCcC
Confidence 3445566569999999998888
No 162
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.66 E-value=9 Score=35.07 Aligned_cols=44 Identities=23% Similarity=0.516 Sum_probs=32.2
Q ss_pred CCcCcccCCCCCCCCc--eeecCCCCcccChhHHHHHHhcCCCCccc
Q 046833 125 DTECVICLSEFAPGES--LRVLPKCNHGFHVHCIDKWLRSHSSCPKC 169 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~--vr~lp~C~H~FH~~CI~~Wl~~~~tCP~C 169 (218)
-..|+.|.-.++..+. -.... |||-|+..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4578888877654443 33454 99999999999998777777554
No 163
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=45.62 E-value=25 Score=31.11 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046833 54 MFFSILISAVVCSLGFHFLIRCVFLR 79 (218)
Q Consensus 54 iil~ill~~li~~l~l~~i~rc~~~r 79 (218)
.|++.++++++++|++++|+..++.|
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILRYR 282 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667777666666665433
No 164
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.56 E-value=44 Score=22.13 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=34.6
Q ss_pred CcCcccCCCCCCCC-ceeecCCCCcccChhHHHHHHhcCCCCccccccccccc
Q 046833 126 TECVICLSEFAPGE-SLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETC 177 (218)
Q Consensus 126 ~~CaICL~ef~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (218)
..|-.|-.++..+. .-++.. =...|+.+|.+.-| +..||.|--.|+..+
T Consensus 6 pnCE~C~~dLp~~s~~A~ICS-fECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICS-FECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CCccccCCCCCCCCCcceEEe-EeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 46777878876655 333322 24679999999965 778999987777654
No 165
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=44.81 E-value=10 Score=37.26 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=33.2
Q ss_pred CCCCcCcccCCCCCCCCc-------eeecCCCCcccChhHHHHH-H---------hcCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGES-------LRVLPKCNHGFHVHCIDKW-L---------RSHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~-------vr~lp~C~H~FH~~CI~~W-l---------~~~~tCP~CR~~l~ 174 (218)
.....|-||-|+=.+.+- +-.- .|...||..|-+.- | .+-+.|-+|+..+-
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs-~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKS-GCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred hhcceeeeecccCCccccccccceecccc-cchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 345689999888544321 1222 38899999998764 1 23456999987554
No 166
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=43.76 E-value=43 Score=24.01 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLI 73 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~ 73 (218)
++++++..+++++++++++.+++
T Consensus 35 dFvLVic~~lVfVii~lFi~ll~ 57 (84)
T PF06143_consen 35 DFVLVICCFLVFVIIVLFILLLY 57 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555543
No 167
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=43.29 E-value=21 Score=22.00 Aligned_cols=23 Identities=4% Similarity=0.171 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046833 53 VMFFSILISAVVCSLGFHFLIRC 75 (218)
Q Consensus 53 iiil~ill~~li~~l~l~~i~rc 75 (218)
++++.++.++.+.++++++..++
T Consensus 11 IlVF~lVglv~i~iva~~iYRKw 33 (43)
T PF08114_consen 11 ILVFCLVGLVGIGIVALFIYRKW 33 (43)
T ss_pred eeehHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 168
>PRK05978 hypothetical protein; Provisional
Probab=43.15 E-value=15 Score=29.08 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=19.6
Q ss_pred CcccChhHHHHHHhcCCCCcccccccccc
Q 046833 148 NHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 148 ~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
||.|+ .+|+.+.+||.|-.++-..
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccC
Confidence 47886 6889999999998877655
No 169
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=43.13 E-value=28 Score=29.36 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 28 HPYNQQPITAAPPPYPAKGCLHFNVVMFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~f~viiil~ill~~li~~l~l~~i~rc~ 76 (218)
+|+... .+..|.+..+.+ ..++++.++..++.+|+++++..++|++
T Consensus 18 tPl~~~--Ia~d~~~~~~~d-~~~I~iaiVAG~~tVILVI~i~v~vR~C 63 (221)
T PF08374_consen 18 TPLDRN--IAGDPASSRSKD-YVKIMIAIVAGIMTVILVIFIVVLVRYC 63 (221)
T ss_pred CCCcCc--ccCCCCcccccc-ceeeeeeeecchhhhHHHHHHHHHHHHH
Confidence 666554 333443332221 2244443333344444444555556744
No 170
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=42.82 E-value=89 Score=20.75 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~ 76 (218)
+.+...++++.++++.+.+..++|..
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~IRri 30 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLFIRRI 30 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333333333344456655
No 171
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=42.82 E-value=15 Score=28.64 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=18.1
Q ss_pred ecCCCCcccChhHHHHHHhcCCCCccccccc
Q 046833 143 VLPKCNHGFHVHCIDKWLRSHSSCPKCRHCL 173 (218)
Q Consensus 143 ~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (218)
..++|||+|+. -+..||.|...-
T Consensus 31 kC~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 31 KCKKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred EcCCCCeEEcC--------CcccCCCCCCCC
Confidence 35579999996 566799998874
No 172
>PF15050 SCIMP: SCIMP protein
Probab=42.60 E-value=37 Score=26.07 Aligned_cols=25 Identities=12% Similarity=0.402 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 046833 55 FFSILISAVVCSLGFHFLIRCVFLR 79 (218)
Q Consensus 55 il~ill~~li~~l~l~~i~rc~~~r 79 (218)
.+++.++++++.+++.+|+.|.+++
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555677778889999999443
No 173
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=42.37 E-value=7.1 Score=25.16 Aligned_cols=14 Identities=36% Similarity=0.664 Sum_probs=7.4
Q ss_pred CCcccccccccccc
Q 046833 165 SCPKCRHCLIETCE 178 (218)
Q Consensus 165 tCP~CR~~l~~~~~ 178 (218)
.||+|.++|-+...
T Consensus 22 ~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR 35 (54)
T ss_dssp E-TTT--EE-HHHH
T ss_pred cCCCCCCCCCHHHH
Confidence 79999998876643
No 174
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=41.93 E-value=20 Score=23.10 Aligned_cols=24 Identities=33% Similarity=0.930 Sum_probs=12.7
Q ss_pred CCCCcccChhHHHHHHhcCCCCccc
Q 046833 145 PKCNHGFHVHCIDKWLRSHSSCPKC 169 (218)
Q Consensus 145 p~C~H~FH~~CI~~Wl~~~~tCP~C 169 (218)
++|||.|... |..-......||.|
T Consensus 32 ~~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 32 PKCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCCeeEcc-HhhhccCCCCCCCC
Confidence 3466665543 22222456678887
No 175
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=41.90 E-value=22 Score=26.00 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHH
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
....|.||......--+...- .|...||..|....
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHP-GCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHHC
Confidence 356899999873221112222 38899999998663
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=41.87 E-value=13 Score=36.49 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=27.8
Q ss_pred CceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 139 ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 139 ~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
..+...|.|.-+||.+=+.--..++..||.||.+--
T Consensus 1042 ~~it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1042 ASITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred chhhhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 344566778888888877777788899999998754
No 177
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=41.76 E-value=48 Score=23.71 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 046833 51 NVVMFFSILISA 62 (218)
Q Consensus 51 ~viiil~ill~~ 62 (218)
++++.+.|++++
T Consensus 25 n~lMtILivLVI 36 (85)
T PF10717_consen 25 NTLMTILIVLVI 36 (85)
T ss_pred hHHHHHHHHHHH
Confidence 555544444433
No 178
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.66 E-value=8.7 Score=35.24 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=0.0
Q ss_pred CCCcCcccCCCCCC-------------C---CceeecCCCCcccChhHHHHHHhc---------CCCCccccccccc
Q 046833 124 SDTECVICLSEFAP-------------G---ESLRVLPKCNHGFHVHCIDKWLRS---------HSSCPKCRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~-------------~---~~vr~lp~C~H~FH~~CI~~Wl~~---------~~tCP~CR~~l~~ 175 (218)
...+|++|+..-.- + -.....| |||+--.....-|-+. +..||.|-..|..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 36789999975310 0 1123466 9999999999999642 3469999887763
No 179
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=41.41 E-value=20 Score=32.00 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=32.4
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC---CCCccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH---SSCPKC 169 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~---~tCP~C 169 (218)
..|++=-++-.+.....++. |||+.-+.-++.--++. ..||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 56888766666666667776 99999999988865443 359999
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=40.57 E-value=24 Score=35.19 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=31.4
Q ss_pred CCCCCcCcccCCCCCC----C-----CceeecCCCCcccChhHHHHHHhcCCCCccccccc
Q 046833 122 SGSDTECVICLSEFAP----G-----ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCL 173 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~----~-----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (218)
+..+..|+-|-..|-. | ...-+.|.|+|.-|.+=|. .+..||+|....
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 4456677777777721 1 1234567799999876544 357899997654
No 181
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=40.57 E-value=27 Score=36.19 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCVFLRCSR 82 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~~~r~~~ 82 (218)
.++||++++..+++++++++++++|-+.++.+
T Consensus 978 ~wiIi~svl~GLLlL~llv~~LwK~GFFKR~r 1009 (1030)
T KOG3637|consen 978 LWIIILSVLGGLLLLALLVLLLWKCGFFKRNR 1009 (1030)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 77888999999999999999999998765444
No 182
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.51 E-value=26 Score=31.38 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=33.1
Q ss_pred CCcCcccCCCCCCCCc-eeecCCCCcccChhHHHHHHhcCCCCcccccc
Q 046833 125 DTECVICLSEFAPGES-LRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHC 172 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (218)
...|+||-+.....+- ..-.| |++.-|..|...-...+.+||.||.+
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~ 296 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKP 296 (327)
T ss_pred CCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCc
Confidence 3789999998744332 22334 77777777777777788899999943
No 183
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=39.61 E-value=18 Score=34.88 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=24.8
Q ss_pred CCCCcCcccCCCCCCC-----------CceeecCCCCcccChhHHHHH
Q 046833 123 GSDTECVICLSEFAPG-----------ESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~-----------~~vr~lp~C~H~FH~~CI~~W 159 (218)
+....|+||-|.|+.- +.|.+. =|-+||..|+..=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 4467899999999531 223332 4889999998874
No 184
>PHA02657 hypothetical protein; Provisional
Probab=39.49 E-value=66 Score=23.17 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=12.4
Q ss_pred CCChHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 046833 47 CLHFNVVM-FFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 47 ~~~f~vii-il~ill~~li~~l~l~~i~rc~ 76 (218)
..+|--++ +...++.+.++...+.++.+|.
T Consensus 21 ~~~~~~imVitvfv~vI~il~flLLYLvkWS 51 (95)
T PHA02657 21 KINFESILVFTIFIFVVCILIYLLIYLVDWS 51 (95)
T ss_pred EecchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34563333 3333333333333444455554
No 185
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=39.13 E-value=4.1 Score=35.84 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=30.1
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS 164 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~ 164 (218)
.+|.+|++++..+....... |.-+||..|+-.|+....
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccccc
Confidence 48999999998766666665 666999999999976543
No 186
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=39.05 E-value=29 Score=23.14 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCcCcccCCCCCC--CCceeecCCCCcccChhHHHH
Q 046833 125 DTECVICLSEFAP--GESLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 125 ~~~CaICL~ef~~--~~~vr~lp~C~H~FH~~CI~~ 158 (218)
...|+.|-..... ....-..+.||+.+|.+-.-.
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 4679999888876 556667777999888775443
No 187
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=38.53 E-value=84 Score=21.54 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 046833 58 ILISAVVCSLGFHF 71 (218)
Q Consensus 58 ill~~li~~l~l~~ 71 (218)
+++|++++.++++.
T Consensus 8 i~ICVaii~lIlY~ 21 (68)
T PF05961_consen 8 IIICVAIIGLILYG 21 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 188
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=38.23 E-value=82 Score=31.65 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046833 53 VMFFSILISAVVCSLGFHFLI 73 (218)
Q Consensus 53 iiil~ill~~li~~l~l~~i~ 73 (218)
+++++||..++++++++++++
T Consensus 273 ~fLl~ILG~~~livl~lL~vL 293 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVL 293 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444444444433
No 189
>PF15179 Myc_target_1: Myc target protein 1
Probab=37.30 E-value=78 Score=26.11 Aligned_cols=7 Identities=14% Similarity=0.206 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 046833 70 HFLIRCV 76 (218)
Q Consensus 70 ~~i~rc~ 76 (218)
+.+..|.
T Consensus 40 ~~Lltwl 46 (197)
T PF15179_consen 40 WALLTWL 46 (197)
T ss_pred HHHHHHH
Confidence 3344554
No 190
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=37.21 E-value=38 Score=23.80 Aligned_cols=8 Identities=25% Similarity=0.795 Sum_probs=5.1
Q ss_pred HHHHHHHH
Q 046833 70 HFLIRCVF 77 (218)
Q Consensus 70 ~~i~rc~~ 77 (218)
+.++||++
T Consensus 43 ~liVRCfr 50 (81)
T PF11057_consen 43 LLIVRCFR 50 (81)
T ss_pred HHHHHHHH
Confidence 45678874
No 191
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=37.03 E-value=19 Score=33.76 Aligned_cols=48 Identities=19% Similarity=0.544 Sum_probs=34.1
Q ss_pred CCcCcccC-CCCCCCCceeecCCCCcccChhHHHHHHhc--------CCCCcccccc
Q 046833 125 DTECVICL-SEFAPGESLRVLPKCNHGFHVHCIDKWLRS--------HSSCPKCRHC 172 (218)
Q Consensus 125 ~~~CaICL-~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~ 172 (218)
+.+|.+|. .......++....+|+--||..|-....+. ...|-+|...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 45699998 445555667777789999999998776521 1248888653
No 192
>PLN02189 cellulose synthase
Probab=36.94 E-value=36 Score=35.12 Aligned_cols=50 Identities=20% Similarity=0.484 Sum_probs=35.5
Q ss_pred CCcCcccCCCCC---CCCceeecCCCCcccChhHHHHHH-hcCCCCcccccccc
Q 046833 125 DTECVICLSEFA---PGESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~---~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~ 174 (218)
...|.||-+++. +|+.-+....|+--.|+.|.+-=- ..++.||-|+...-
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 458999999984 445445555577778999984333 34567999988766
No 193
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=36.35 E-value=47 Score=21.10 Aligned_cols=39 Identities=28% Similarity=0.713 Sum_probs=16.8
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHH--HHHhc-----CCCCccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCID--KWLRS-----HSSCPKCRH 171 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~--~Wl~~-----~~tCP~CR~ 171 (218)
.|+|....+.- .+|-.. |.|. +|+| .||.. .-.||+|.+
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHL---QCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS-----EEHHHHHHHHHHS---B-TTT--
T ss_pred eCCCCCCEEEe--CccCCc-Cccc---ceECHHHHHHHhhccCCeECcCCcC
Confidence 57777766532 456554 8887 4544 45532 225999975
No 194
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=36.29 E-value=73 Score=26.20 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=9.7
Q ss_pred hhHHHHHH--hcCCCCcc
Q 046833 153 VHCIDKWL--RSHSSCPK 168 (218)
Q Consensus 153 ~~CI~~Wl--~~~~tCP~ 168 (218)
.+-+..|| ..+..+|.
T Consensus 126 G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 126 GENFRSYLLDLRNSSTPL 143 (186)
T ss_pred cccHHHHHHHHHhccCCc
Confidence 55677888 44445543
No 195
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=35.97 E-value=25 Score=26.49 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCCcCcccCCCCCCCC-ceeecCCCCcccChhHHHH
Q 046833 124 SDTECVICLSEFAPGE-SLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~-~vr~lp~C~H~FH~~CI~~ 158 (218)
++..|++|...|.--. .-+....|+|.++..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 4578999999874322 2355566999999888544
No 196
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.75 E-value=13 Score=34.51 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=28.1
Q ss_pred CCCcCcccCCCCCCCCcee----ecCCCCcccChhHHHHHHhc
Q 046833 124 SDTECVICLSEFAPGESLR----VLPKCNHGFHVHCIDKWLRS 162 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr----~lp~C~H~FH~~CI~~Wl~~ 162 (218)
+-..|+.|...++.+...- ....|+|.||+.|+..|-..
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 3456999999998766322 11139999999999998644
No 197
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=34.73 E-value=13 Score=32.79 Aligned_cols=19 Identities=16% Similarity=-0.011 Sum_probs=0.0
Q ss_pred chhHHHHHhhhccchhhhh
Q 046833 7 SSTQLSHDFIGKFHSRKLL 25 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~r~ll 25 (218)
+...|..+|-.-.++...+
T Consensus 87 f~~am~pef~V~svsv~~~ 105 (290)
T PF05454_consen 87 FVRAMGPEFKVKSVSVIPI 105 (290)
T ss_dssp -------------------
T ss_pred HHHHhCCCCceeEEEEEEe
Confidence 4444444554444444333
No 198
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=34.69 E-value=38 Score=26.48 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.0
Q ss_pred CCCcccccccccccc
Q 046833 164 SSCPKCRHCLIETCE 178 (218)
Q Consensus 164 ~tCP~CR~~l~~~~~ 178 (218)
..||.|...|.+...
T Consensus 124 f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 124 FTCPRCGEELEEDDN 138 (147)
T ss_pred EECCCCCCEEEEcCc
Confidence 679999998887644
No 199
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=34.51 E-value=36 Score=29.90 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSL 67 (218)
Q Consensus 51 ~viiil~ill~~li~~l 67 (218)
.+-|++++.|+++++++
T Consensus 272 ~vPIaVG~~La~lvliv 288 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIV 288 (306)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33344554444444433
No 200
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=34.37 E-value=58 Score=29.55 Aligned_cols=9 Identities=11% Similarity=0.154 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 046833 68 GFHFLIRCV 76 (218)
Q Consensus 68 ~l~~i~rc~ 76 (218)
+++++.|+.
T Consensus 328 IIYLILRYR 336 (353)
T TIGR01477 328 IIYLILRYR 336 (353)
T ss_pred HHHHHHHhh
Confidence 334444443
No 201
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=34.27 E-value=29 Score=19.51 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=18.9
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHH
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCI 156 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI 156 (218)
.|.||-.+..... .-....|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5889977765543 3333458888888773
No 202
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=32.97 E-value=64 Score=21.16 Aligned_cols=16 Identities=13% Similarity=0.420 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 046833 50 FNVVMFFSILISAVVC 65 (218)
Q Consensus 50 f~viiil~ill~~li~ 65 (218)
+++++|+++++++++.
T Consensus 3 ~~~wlIIviVlgvIig 18 (55)
T PF11446_consen 3 WNPWLIIVIVLGVIIG 18 (55)
T ss_pred chhhHHHHHHHHHHHh
Confidence 4455555554444433
No 203
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=32.91 E-value=17 Score=20.37 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=7.2
Q ss_pred CCcccccccccccc
Q 046833 165 SCPKCRHCLIETCE 178 (218)
Q Consensus 165 tCP~CR~~l~~~~~ 178 (218)
+||+|-..|...++
T Consensus 1 ~CP~C~s~l~~~~~ 14 (28)
T PF03119_consen 1 TCPVCGSKLVREEG 14 (28)
T ss_dssp B-TTT--BEEE-CC
T ss_pred CcCCCCCEeEcCCC
Confidence 49999998885433
No 204
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.44 E-value=37 Score=21.79 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=8.7
Q ss_pred CcCcccCCCCCC
Q 046833 126 TECVICLSEFAP 137 (218)
Q Consensus 126 ~~CaICL~ef~~ 137 (218)
.+|.+|.-.|..
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 468888877764
No 205
>PTZ00046 rifin; Provisional
Probab=32.39 E-value=64 Score=29.33 Aligned_cols=8 Identities=13% Similarity=0.359 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 046833 69 FHFLIRCV 76 (218)
Q Consensus 69 l~~i~rc~ 76 (218)
++++.|+.
T Consensus 334 IYLILRYR 341 (358)
T PTZ00046 334 IYLILRYR 341 (358)
T ss_pred HHHHHHhh
Confidence 33444433
No 206
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=32.04 E-value=55 Score=23.14 Aligned_cols=51 Identities=20% Similarity=0.485 Sum_probs=20.5
Q ss_pred CCCcCcccCCCCC---CCCceeecCCCCcccChhHHHHHHh-cCCCCcccccccc
Q 046833 124 SDTECVICLSEFA---PGESLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~---~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~ 174 (218)
+...|-||-+++. +|+.-.....|+--.++.|..-=.+ .++.||-|+....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 3568999998873 3443333334666777888776554 4567999987655
No 207
>PHA03240 envelope glycoprotein M; Provisional
Probab=31.36 E-value=60 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046833 52 VVMFFSILISAVVCSLGFHFLIRCVFLRC 80 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i~rc~~~r~ 80 (218)
++||++|+++++|+++++-+--|.+ .+|
T Consensus 214 ~WIiilIIiIiIIIL~cfKiPQKl~-dKw 241 (258)
T PHA03240 214 AWIFIAIIIIIVIILFFFKIPQKLF-DKW 241 (258)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHH-HHH
Confidence 3333333333333333333333444 444
No 208
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.17 E-value=10 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=13.6
Q ss_pred CCCcccChhHHHHHHhcCCCCccccc
Q 046833 146 KCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
+|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 47777764211000 23446999977
No 209
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=31.03 E-value=22 Score=21.18 Aligned_cols=32 Identities=25% Similarity=0.654 Sum_probs=18.8
Q ss_pred eecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 142 RVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 142 r~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
++.++||++||..=--. +....|..|-..|+.
T Consensus 2 r~C~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~q 33 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP--KVEGVCDNCGGELVQ 33 (36)
T ss_dssp EEETTTTEEEETTTB----SSTTBCTTTTEBEBE
T ss_pred cCcCCCCCccccccCCC--CCCCccCCCCCeeEe
Confidence 45677999999421100 233458888776654
No 210
>PRK11827 hypothetical protein; Provisional
Probab=30.12 E-value=17 Score=24.30 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.3
Q ss_pred HHHHhcCCCCcccccccccc
Q 046833 157 DKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 157 ~~Wl~~~~tCP~CR~~l~~~ 176 (218)
++||..--.||+|+..|...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 56777778899999998754
No 211
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=30.03 E-value=69 Score=26.98 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 046833 53 VMFFSILISAVVCSLGFHFLIRCVFLRC 80 (218)
Q Consensus 53 iiil~ill~~li~~l~l~~i~rc~~~r~ 80 (218)
|.++++++++++.++++.++.|-.+.|+
T Consensus 180 W~i~~~~~i~~i~~i~i~~irR~i~lky 207 (215)
T PHA02947 180 WFIVGVVIILIIFVIAICSIKRKINLKY 207 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 3344666666666666677777665554
No 212
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=29.81 E-value=31 Score=29.88 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC--CCcc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS--SCPK 168 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCP~ 168 (218)
...|+|=...+.+ ..+-.+|||+|-.+=|...+.... .||+
T Consensus 176 s~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 4578887666543 233346999999999999986644 4775
No 213
>PLN02436 cellulose synthase A
Probab=29.80 E-value=55 Score=33.98 Aligned_cols=50 Identities=22% Similarity=0.525 Sum_probs=35.4
Q ss_pred CCcCcccCCCC---CCCCceeecCCCCcccChhHHHHHH-hcCCCCcccccccc
Q 046833 125 DTECVICLSEF---APGESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef---~~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~ 174 (218)
...|-||-+++ .+|+.-.-...|+--.|+.|.+-=- ..++.||-|+...-
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 45899999997 4555545555577778999984433 23567999988765
No 214
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.70 E-value=25 Score=31.08 Aligned_cols=32 Identities=31% Similarity=0.652 Sum_probs=24.9
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHH
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
..|.||+....+++.+ ....|.-.||.-|+..
T Consensus 315 ~lC~IC~~P~~E~E~~-FCD~CDRG~HT~CVGL 346 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHL-FCDVCDRGPHTLCVGL 346 (381)
T ss_pred HhhhccCCcccchhee-ccccccCCCCcccccc
Confidence 5799999988775544 5556999999999864
No 215
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.17 E-value=24 Score=25.91 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 046833 54 MFFSILISAVV 64 (218)
Q Consensus 54 iil~ill~~li 64 (218)
+++..++++++
T Consensus 66 i~lls~v~IlV 76 (101)
T PF06024_consen 66 ISLLSFVCILV 76 (101)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 216
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=29.09 E-value=72 Score=17.33 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=6.4
Q ss_pred ChHHHHHHHHHHHH
Q 046833 49 HFNVVMFFSILISA 62 (218)
Q Consensus 49 ~f~viiil~ill~~ 62 (218)
.|..++++.|++++
T Consensus 5 ~FalivVLFILLiI 18 (24)
T PF09680_consen 5 GFALIVVLFILLII 18 (24)
T ss_pred cchhHHHHHHHHHH
Confidence 45444444444443
No 217
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=28.85 E-value=91 Score=24.55 Aligned_cols=19 Identities=21% Similarity=0.072 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046833 58 ILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 58 ill~~li~~l~l~~i~rc~ 76 (218)
|+..++++..+++.++|-.
T Consensus 125 i~g~ll~i~~giy~~~r~~ 143 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRKV 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344444555555543
No 218
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=28.65 E-value=28 Score=34.00 Aligned_cols=52 Identities=25% Similarity=0.574 Sum_probs=32.1
Q ss_pred CCcCcccCCCCCCCCc-eeecCCCCcccChhHHHHHHhc-----CCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGES-LRVLPKCNHGFHVHCIDKWLRS-----HSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~-vr~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~~l~~~ 176 (218)
...|.+|-..=...+. ......|+-.||..|+..|+.. .-.||-||.+..-.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 3456666443222221 2222358999999999999843 23699998865544
No 219
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=28.58 E-value=1.8e+02 Score=21.55 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~ 76 (218)
.++|-|+.+++++-++.++++++|-.
T Consensus 20 IfLItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 20 IFLITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344555555555556666666553
No 220
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.42 E-value=65 Score=23.88 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.5
Q ss_pred CcccChhHHHHHHhc---------CCCCccccc
Q 046833 148 NHGFHVHCIDKWLRS---------HSSCPKCRH 171 (218)
Q Consensus 148 ~H~FH~~CI~~Wl~~---------~~tCP~CR~ 171 (218)
.=.|+..||..++.. +-.||.||-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 778999999988732 225999986
No 221
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=28.40 E-value=31 Score=29.60 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCC--Cc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSS--CP 167 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~t--CP 167 (218)
+..|+|=|..+. ...+-.+|+|.|-.+-|...++...+ ||
T Consensus 189 ~nrCpitl~p~~---~pils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDF---YPILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcch---hHHHHhhhcccccHHHHHHHhcCCceeecc
Confidence 568999887753 24455579999999999999886555 55
No 222
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=28.14 E-value=1.5e+02 Score=25.32 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046833 56 FSILISAVVCSLGFHFLIR 74 (218)
Q Consensus 56 l~ill~~li~~l~l~~i~r 74 (218)
++++.+.++.++++|.+++
T Consensus 197 liVitl~vf~LvgLyr~C~ 215 (259)
T PF07010_consen 197 LIVITLSVFTLVGLYRMCW 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333333444445555555
No 223
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=27.56 E-value=44 Score=23.34 Aligned_cols=33 Identities=30% Similarity=0.627 Sum_probs=22.5
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
...|.+|-.....-..... ++|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~-~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSH-PGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeC-CCCCcEEChHHHcc
Confidence 4689999876333223333 35999999999654
No 224
>PTZ00046 rifin; Provisional
Probab=27.53 E-value=84 Score=28.60 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 046833 57 SILISAVVCSLGFHFLIRCVFLRCSRL 83 (218)
Q Consensus 57 ~ill~~li~~l~l~~i~rc~~~r~~~~ 83 (218)
+-++++++++|++++|+-. +|.||.
T Consensus 319 aSiiAIvVIVLIMvIIYLI--LRYRRK 343 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYLI--LRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhc
Confidence 3344444555555554444 555553
No 225
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=27.27 E-value=33 Score=32.41 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=10.5
Q ss_pred CCcCcccCCCCCCCC
Q 046833 125 DTECVICLSEFAPGE 139 (218)
Q Consensus 125 ~~~CaICL~ef~~~~ 139 (218)
..-|+-||+++...+
T Consensus 26 ~~yCp~CL~~~p~~e 40 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSE 40 (483)
T ss_pred eeECccccccCChhh
Confidence 456888888885543
No 226
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=27.27 E-value=91 Score=22.17 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.3
Q ss_pred CCCCHH
Q 046833 100 SGIQQE 105 (218)
Q Consensus 100 ~g~~~~ 105 (218)
.|...+
T Consensus 58 ~Gd~Ee 63 (81)
T PF00558_consen 58 DGDEEE 63 (81)
T ss_dssp TTCCHH
T ss_pred CCcHHH
Confidence 333333
No 227
>PHA03049 IMV membrane protein; Provisional
Probab=27.26 E-value=1.5e+02 Score=20.24 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 046833 58 ILISAVVCSLGFHFL 72 (218)
Q Consensus 58 ill~~li~~l~l~~i 72 (218)
+++|++++.++++.+
T Consensus 8 ~iICVaIi~lIvYgi 22 (68)
T PHA03049 8 VIICVVIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 228
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.95 E-value=2.1e+02 Score=19.43 Aligned_cols=8 Identities=13% Similarity=0.052 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 046833 55 FFSILISA 62 (218)
Q Consensus 55 il~ill~~ 62 (218)
++++.+++
T Consensus 9 i~Gm~iVF 16 (79)
T PF04277_consen 9 IIGMGIVF 16 (79)
T ss_pred HHHHHHHH
Confidence 33333333
No 229
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.93 E-value=32 Score=22.99 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=11.6
Q ss_pred cCCCCccccccccccc
Q 046833 162 SHSSCPKCRHCLIETC 177 (218)
Q Consensus 162 ~~~tCP~CR~~l~~~~ 177 (218)
....||+|........
T Consensus 38 ~~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSGT 53 (59)
T ss_pred CCccCCCcCCccccce
Confidence 3467999988877653
No 230
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=26.59 E-value=1e+02 Score=28.37 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 046833 63 VVCSLGFHFLIRCVFLR 79 (218)
Q Consensus 63 li~~l~l~~i~rc~~~r 79 (218)
.++.+.+++++||+.+|
T Consensus 33 ~Ll~ll~yl~~~CC~r~ 49 (406)
T PF04906_consen 33 SLLFLLIYLICRCCCRR 49 (406)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 33445566677888433
No 231
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=26.58 E-value=89 Score=28.37 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 046833 57 SILISAVVCSLGFHFLIRCVFLRCSRL 83 (218)
Q Consensus 57 ~ill~~li~~l~l~~i~rc~~~r~~~~ 83 (218)
+-++++++++|++++|+-. +|.||.
T Consensus 314 aSiIAIvvIVLIMvIIYLI--LRYRRK 338 (353)
T TIGR01477 314 ASIIAILIIVLIMVIIYLI--LRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhc
Confidence 3344445555555544444 555553
No 232
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=26.27 E-value=1e+02 Score=23.42 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046833 47 CLHFNVVMFFSILISAVVCSLGFHFLIRCVFLR 79 (218)
Q Consensus 47 ~~~f~viiil~ill~~li~~l~l~~i~rc~~~r 79 (218)
..+|.+.|-+..++...-.+++-+++..|...|
T Consensus 67 ~v~fLvfmTlVaLIgTMCgILgTiIfahcqkq~ 99 (130)
T PF02960_consen 67 QVHFLVFMTLVALIGTMCGILGTIIFAHCQKQR 99 (130)
T ss_pred EeeeeHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 356777777777777777788888888888444
No 233
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=26.21 E-value=49 Score=24.55 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=27.5
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHH
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL 160 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
..|.||-.++-.|+.-..+.+ -..|..|+..=.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 469999999999998888864 677999988754
No 234
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=11 Score=32.78 Aligned_cols=49 Identities=29% Similarity=0.515 Sum_probs=37.1
Q ss_pred CCcCcccCCCCCCC-C--ceeecCC-------CCcccChhHHHHHHhcC-CCCccccccc
Q 046833 125 DTECVICLSEFAPG-E--SLRVLPK-------CNHGFHVHCIDKWLRSH-SSCPKCRHCL 173 (218)
Q Consensus 125 ~~~CaICL~ef~~~-~--~vr~lp~-------C~H~FH~~CI~~Wl~~~-~tCP~CR~~l 173 (218)
...|.||...|... . ..+++.. |+|..+..|++.-+... ..||.||...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 36799999999843 2 2344433 99999999999997443 5899998764
No 235
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.60 E-value=98 Score=21.01 Aligned_cols=6 Identities=33% Similarity=0.545 Sum_probs=2.4
Q ss_pred HHHHHH
Q 046833 71 FLIRCV 76 (218)
Q Consensus 71 ~i~rc~ 76 (218)
++.|..
T Consensus 16 f~ar~~ 21 (64)
T PF03672_consen 16 FIARKY 21 (64)
T ss_pred HHHHHH
Confidence 334433
No 236
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.40 E-value=19 Score=28.23 Aligned_cols=59 Identities=27% Similarity=0.514 Sum_probs=28.7
Q ss_pred CCCCcCcccCC-CCCCCCceeecCCCCcccChhHHHHHH-hcCC---CCccccc--ccccccccccC
Q 046833 123 GSDTECVICLS-EFAPGESLRVLPKCNHGFHVHCIDKWL-RSHS---SCPKCRH--CLIETCEESVG 182 (218)
Q Consensus 123 ~~~~~CaICL~-ef~~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~---tCP~CR~--~l~~~~~~~~~ 182 (218)
..+..|-||+. .|.+|-.-.-.- |.--|+..|-..-- ++++ .|-+|+. .++.+..++..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~ 128 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY 128 (169)
T ss_pred CcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHH
Confidence 45678999985 344422111111 33334444433322 2233 3888865 34444444444
No 237
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.31 E-value=40 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=13.6
Q ss_pred cCCCCcccccccccccc
Q 046833 162 SHSSCPKCRHCLIETCE 178 (218)
Q Consensus 162 ~~~tCP~CR~~l~~~~~ 178 (218)
-|+.|++|-..+++.++
T Consensus 7 PH~HC~VCg~aIp~de~ 23 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQ 23 (64)
T ss_pred CCccccccCCcCCCccc
Confidence 37789999999887754
No 238
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.25 E-value=49 Score=24.33 Aligned_cols=35 Identities=17% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR 161 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~ 161 (218)
...|.||-+.+..|++-...+ .-..|.+|+..=..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHh
Confidence 357999999999999888876 55669999887543
No 239
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=25.21 E-value=35 Score=35.35 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=37.4
Q ss_pred CCCCCcCcccCCCCCCC-CceeecCCCCcccChhHHHHHHhcCCCCcccccccccccc
Q 046833 122 SGSDTECVICLSEFAPG-ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCE 178 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (218)
.+.+..|.||++-=..+ +.+.....|+=..|.+|...= -.+.-+=.||++|..+..
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~-~ipeg~WlCr~Cl~s~~~ 272 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP-FIPEGQWLCRRCLQSPQR 272 (1051)
T ss_pred cCCCccceeecccccCCCceEEEcCCCcchhhhhccCCC-CCCCCcEeehhhccCcCc
Confidence 45678999999865442 456667789999999998810 112235567777765543
No 240
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=25.02 E-value=98 Score=29.74 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046833 55 FFSILISAVVCSLGFHFLIR 74 (218)
Q Consensus 55 il~ill~~li~~l~l~~i~r 74 (218)
+++|++++++++++.+++.|
T Consensus 6 ii~i~ii~i~~~~~~~~~rr 25 (569)
T PRK04778 6 IIAIVVIIIIAYLAGLILRK 25 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 241
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=24.94 E-value=93 Score=17.23 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=7.1
Q ss_pred CChHHHHHHHHHHHH
Q 046833 48 LHFNVVMFFSILISA 62 (218)
Q Consensus 48 ~~f~viiil~ill~~ 62 (218)
..|..++++.|++++
T Consensus 6 ~gf~livVLFILLII 20 (26)
T TIGR01732 6 GGFALIVVLFILLVI 20 (26)
T ss_pred cchHHHHHHHHHHHH
Confidence 345555554444443
No 242
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=24.45 E-value=27 Score=30.86 Aligned_cols=36 Identities=22% Similarity=0.577 Sum_probs=27.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL 160 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
.-...|+-|-+-+-...-||.- -.|+||.+|+...+
T Consensus 90 rfGTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~C~i 125 (383)
T KOG4577|consen 90 RFGTKCSACQEGIPPTQVVRKA--QDFVYHLHCFACFI 125 (383)
T ss_pred HhCCcchhhcCCCChHHHHHHh--hcceeehhhhhhHh
Confidence 3457899999988776666655 68999999987654
No 243
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=24.34 E-value=34 Score=32.77 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=45.8
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.....|.+|+......++.+.+..|.|-+...|+..|-.....|+.|+..+.--
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~ 311 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTI 311 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccccc
Confidence 345689999999988888888887889999999999988888999998766543
No 244
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.33 E-value=53 Score=28.05 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=19.2
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccC
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFH 152 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH 152 (218)
..|++|-+.+...+.--.++ .||.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCCc
Confidence 46999999997666555555 688883
No 245
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=24.07 E-value=59 Score=29.49 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~ 76 (218)
.+++|++|.+.+-++++++-.++-|.
T Consensus 318 lvi~i~~vgLG~P~l~li~Ggl~v~~ 343 (350)
T PF15065_consen 318 LVIMIMAVGLGVPLLLLILGGLYVCL 343 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHhhheEEE
Confidence 66666666666655555555555555
No 246
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=23.93 E-value=82 Score=21.42 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 046833 53 VMFFSILISAVVC 65 (218)
Q Consensus 53 iiil~ill~~li~ 65 (218)
+++++|+++++++
T Consensus 2 WIiiSIvLai~lL 14 (66)
T PF07438_consen 2 WIIISIVLAIALL 14 (66)
T ss_pred hhhHHHHHHHHHH
Confidence 4455555444333
No 247
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=23.75 E-value=1.3e+02 Score=21.99 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCS 66 (218)
Q Consensus 51 ~viiil~ill~~li~~ 66 (218)
|+.|++++++.++++.
T Consensus 51 N~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 51 NFGILIAFWIFFIVLT 66 (103)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5555444444443333
No 248
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=23.43 E-value=1e+02 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 046833 61 SAVVCSLGFHFLIRCVFLRCS 81 (218)
Q Consensus 61 ~~li~~l~l~~i~rc~~~r~~ 81 (218)
++++.++++.++.|-.+.|++
T Consensus 196 i~~i~vv~i~~irR~i~lkYr 216 (226)
T PHA02662 196 VTVLGVVAVSLLRRALRIRFR 216 (226)
T ss_pred HHHHHHHHHHHHHHHhheeee
Confidence 444455555666666655543
No 249
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=23.23 E-value=60 Score=24.40 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=16.5
Q ss_pred CcCcccCCCCC--CCCceeecCCCCccc
Q 046833 126 TECVICLSEFA--PGESLRVLPKCNHGF 151 (218)
Q Consensus 126 ~~CaICL~ef~--~~~~vr~lp~C~H~F 151 (218)
..|+-|-++|. +++ .-+.|.|+|-+
T Consensus 3 p~CP~C~seytY~dg~-~~iCpeC~~EW 29 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGT-QLICPSCLYEW 29 (109)
T ss_pred CcCCcCCCcceEecCC-eeECccccccc
Confidence 46999999884 333 45666677753
No 250
>PF15353 HECA: Headcase protein family homologue
Probab=22.97 E-value=47 Score=24.86 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=12.1
Q ss_pred CCcccChhHHHHH
Q 046833 147 CNHGFHVHCIDKW 159 (218)
Q Consensus 147 C~H~FH~~CI~~W 159 (218)
.++..|.+|++.|
T Consensus 40 ~~~~MH~~CF~~w 52 (107)
T PF15353_consen 40 FGQYMHRECFEKW 52 (107)
T ss_pred CCCchHHHHHHHH
Confidence 5899999999999
No 251
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=22.92 E-value=2.5e+02 Score=19.88 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=7.8
Q ss_pred CCCCChHHHHHHHHHHHH
Q 046833 45 KGCLHFNVVMFFSILISA 62 (218)
Q Consensus 45 ~~~~~f~viiil~ill~~ 62 (218)
.+....+.-++.+++++=
T Consensus 26 s~C~~ls~g~LaGiV~~D 43 (79)
T PF07213_consen 26 SGCYPLSPGLLAGIVAAD 43 (79)
T ss_pred CCccccCHHHHHHHHHHH
Confidence 344444444444444443
No 252
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=22.80 E-value=20 Score=24.76 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=20.3
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
..|+.|-.+++.. =+|.++..|-.. +.....||-|...|..
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEEe--------CCEEECcccccc-ceecccCCCcccHHHH
Confidence 3688888775332 255555666443 3456679999887653
No 253
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.74 E-value=1.7e+02 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=19.0
Q ss_pred hcCCcccccccccCCCCCCcCcccCCCCCCCCceeec
Q 046833 108 RDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVL 144 (218)
Q Consensus 108 ~~lp~~~~~~~~~~~~~~~~CaICL~ef~~~~~vr~l 144 (218)
+++-.++|++-.. .+.+-.-+++|-+- .++.+...
T Consensus 81 ~kvgvvRYnAF~d-mGg~LSFslAlLD~-~~nGvVlt 115 (151)
T PF14584_consen 81 QKVGVVRYNAFED-MGGDLSFSLALLDD-NNNGVVLT 115 (151)
T ss_pred ceEEEEEccCccc-ccccceeeeEEEeC-CCCEEEEE
Confidence 3445566665433 24456677777664 33555444
No 254
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.67 E-value=28 Score=32.45 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 046833 64 VCSLGFHFLIRCVFLRCSR 82 (218)
Q Consensus 64 i~~l~l~~i~rc~~~r~~~ 82 (218)
++++++.+++-|.++|+++
T Consensus 364 livVv~viv~vc~~~rrrR 382 (439)
T PF02480_consen 364 LIVVVGVIVWVCLRCRRRR 382 (439)
T ss_dssp -------------------
T ss_pred HHHHHHHHhheeeeehhcc
Confidence 3334444455566444433
No 255
>PLN02248 cellulose synthase-like protein
Probab=22.66 E-value=1e+02 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=25.4
Q ss_pred CCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 147 CNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 147 C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
|++..|.+|...-++....||-|+.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1135)
T PLN02248 150 CGFKICRDCYIDAVKSGGICPGCKEPYKVT 179 (1135)
T ss_pred ccchhHHhHhhhhhhcCCCCCCCccccccc
Confidence 778888999888888888999999988443
No 256
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.63 E-value=1.6e+02 Score=19.18 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 046833 50 FNVVMFFSILISAVVCSL 67 (218)
Q Consensus 50 f~viiil~ill~~li~~l 67 (218)
..+++++++++.+++..+
T Consensus 20 l~l~il~~f~~G~llg~l 37 (68)
T PF06305_consen 20 LGLLILIAFLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444554444444443
No 257
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=22.42 E-value=43 Score=19.17 Aligned_cols=25 Identities=36% Similarity=0.778 Sum_probs=9.9
Q ss_pred CcCcccCCCCCC-CCceeecCCCCcc
Q 046833 126 TECVICLSEFAP-GESLRVLPKCNHG 150 (218)
Q Consensus 126 ~~CaICL~ef~~-~~~vr~lp~C~H~ 150 (218)
..|+-|-+++.= +..+-+.|.|+|-
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPECGHE 28 (30)
T ss_dssp ---TTT-----EE-SSSEEETTTTEE
T ss_pred CCCCCCCCcceeccCCEEeCCccccc
Confidence 357788777742 2335566677775
No 258
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=22.16 E-value=43 Score=22.42 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=10.0
Q ss_pred CCCCccccccccc
Q 046833 163 HSSCPKCRHCLIE 175 (218)
Q Consensus 163 ~~tCP~CR~~l~~ 175 (218)
+..||+|+..+.-
T Consensus 2 k~~CPlCkt~~n~ 14 (61)
T PF05715_consen 2 KSLCPLCKTTLNV 14 (61)
T ss_pred CccCCcccchhhc
Confidence 5679999987743
No 259
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.69 E-value=91 Score=26.32 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 046833 51 NVVMFFSI 58 (218)
Q Consensus 51 ~viiil~i 58 (218)
|++|++++
T Consensus 17 NiaI~IV~ 24 (217)
T PF07423_consen 17 NIAIGIVS 24 (217)
T ss_pred HHHHHHHH
Confidence 44544443
No 260
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=44 Score=24.39 Aligned_cols=13 Identities=38% Similarity=1.158 Sum_probs=11.2
Q ss_pred cccChhHHHHHHh
Q 046833 149 HGFHVHCIDKWLR 161 (218)
Q Consensus 149 H~FH~~CI~~Wl~ 161 (218)
-.||..|+..|..
T Consensus 41 AgFCRNCLs~Wy~ 53 (104)
T COG3492 41 AGFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3699999999985
No 261
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=21.55 E-value=1.2e+02 Score=28.88 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 53 VMFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 53 iiil~ill~~li~~l~l~~i~rc~ 76 (218)
++|++++++.+++++.+++++|..
T Consensus 471 ~~Il~~l~i~~~~~~~~i~~~~~~ 494 (507)
T PF07245_consen 471 LIILGFLIIGILIFVLLIFICRSG 494 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 262
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.48 E-value=1e+02 Score=24.02 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 046833 62 AVVCSLGFHFLIRCV 76 (218)
Q Consensus 62 ~li~~l~l~~i~rc~ 76 (218)
.+++...+++++|+.
T Consensus 112 ~i~is~~~~~~yr~~ 126 (139)
T PHA03099 112 GIIITCCLLSVYRFT 126 (139)
T ss_pred HHHHHHHHHhhheee
Confidence 333344444555544
No 263
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.35 E-value=1.4e+02 Score=26.42 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 046833 70 HFLIRCV 76 (218)
Q Consensus 70 ~~i~rc~ 76 (218)
++++|..
T Consensus 280 iWlyrrR 286 (295)
T TIGR01478 280 IWLYRRR 286 (295)
T ss_pred HHHHHhh
Confidence 3444444
No 264
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.71 E-value=48 Score=29.51 Aligned_cols=42 Identities=21% Similarity=0.443 Sum_probs=27.6
Q ss_pred CCCcCcccCCCCCC-------CCceeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 124 SDTECVICLSEFAP-------GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~ef~~-------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
....|+||-+.=.. .+..| |.+|.-|-..|--....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR------YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 45789999776311 12233 44556677778777888999965
No 265
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=20.69 E-value=1.2e+02 Score=21.77 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=31.3
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|.-|...+.--| ..| |-.|+..+..|..|++.+...
T Consensus 33 rS~C~~C~~~L~~~~---lIP----------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD---LIP----------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CCcCcCCCCcCcccc---cch----------HHHHHHhCCCCcccCCCCChH
Confidence 467999999887655 456 778999999999999987654
No 266
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=20.35 E-value=61 Score=25.83 Aligned_cols=7 Identities=29% Similarity=0.847 Sum_probs=4.2
Q ss_pred cCcccCCC
Q 046833 127 ECVICLSE 134 (218)
Q Consensus 127 ~CaICL~e 134 (218)
-| +|.++
T Consensus 113 GC-~c~eD 119 (153)
T KOG3352|consen 113 GC-GCEED 119 (153)
T ss_pred ee-cccCC
Confidence 36 67665
No 267
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=20.32 E-value=91 Score=18.09 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=5.3
Q ss_pred cCcccCCCC
Q 046833 127 ECVICLSEF 135 (218)
Q Consensus 127 ~CaICL~ef 135 (218)
+|+-|-..|
T Consensus 4 ~CP~C~~~~ 12 (38)
T TIGR02098 4 QCPNCKTSF 12 (38)
T ss_pred ECCCCCCEE
Confidence 466666655
Done!