Query 046833
Match_columns 218
No_of_seqs 203 out of 1725
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 2.2E-19 7.4E-24 130.0 7.3 78 97-175 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 5.6E-18 1.9E-22 117.9 2.9 69 106-176 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 5.8E-17 2E-21 105.9 4.6 52 123-174 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 3.7E-16 1.3E-20 108.2 5.8 53 123-176 13-65 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 4.6E-16 1.6E-20 106.3 5.4 54 122-176 11-64 (69)
6 2ecl_A Ring-box protein 2; RNF 99.6 3.1E-16 1.1E-20 111.0 4.1 53 124-176 14-77 (81)
7 2ect_A Ring finger protein 126 99.6 1E-15 3.4E-20 107.0 6.1 53 123-176 13-65 (78)
8 2ecm_A Ring finger and CHY zin 99.5 6.1E-15 2.1E-19 96.1 5.0 51 123-174 3-54 (55)
9 2d8s_A Cellular modulator of i 99.5 8.2E-15 2.8E-19 103.7 4.7 55 120-176 10-71 (80)
10 2ea6_A Ring finger protein 4; 99.5 1.1E-14 3.9E-19 98.8 4.2 52 123-175 13-68 (69)
11 1v87_A Deltex protein 2; ring- 99.5 1.5E-14 5.2E-19 108.1 4.9 51 125-176 25-95 (114)
12 3dpl_R Ring-box protein 1; ubi 99.5 2.1E-14 7.2E-19 106.8 5.1 51 123-174 35-100 (106)
13 3ng2_A RNF4, snurf, ring finge 99.5 8.9E-15 3.1E-19 100.1 2.7 53 123-176 8-64 (71)
14 1chc_A Equine herpes virus-1 r 99.5 7.2E-14 2.5E-18 94.9 6.2 51 123-176 3-53 (68)
15 2xeu_A Ring finger protein 4; 99.5 1.8E-14 6.3E-19 96.3 2.3 52 124-176 2-57 (64)
16 2ecn_A Ring finger protein 141 99.4 4.6E-14 1.6E-18 96.4 3.0 49 123-176 13-61 (70)
17 2d8t_A Dactylidin, ring finger 99.4 8.2E-14 2.8E-18 95.7 3.3 50 123-176 13-62 (71)
18 2djb_A Polycomb group ring fin 99.4 2.7E-13 9.2E-18 93.3 5.1 51 123-176 13-63 (72)
19 4a0k_B E3 ubiquitin-protein li 99.4 4.1E-14 1.4E-18 106.9 0.6 52 123-174 46-111 (117)
20 2ct2_A Tripartite motif protei 99.4 3.9E-13 1.3E-17 95.4 5.6 53 123-176 13-69 (88)
21 2csy_A Zinc finger protein 183 99.3 8.9E-13 3E-17 92.7 5.1 48 123-174 13-60 (81)
22 2yur_A Retinoblastoma-binding 99.3 1.3E-12 4.3E-17 90.5 5.5 51 123-176 13-65 (74)
23 2ysl_A Tripartite motif-contai 99.3 1.7E-12 5.8E-17 89.1 5.2 50 123-176 18-70 (73)
24 2ct0_A Non-SMC element 1 homol 99.3 1.6E-12 5.5E-17 90.4 4.4 51 123-176 13-65 (74)
25 2ecy_A TNF receptor-associated 99.3 2E-12 6.7E-17 87.4 4.4 50 123-176 13-63 (66)
26 4ayc_A E3 ubiquitin-protein li 99.3 1.2E-12 4.1E-17 101.2 3.5 48 125-176 53-100 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.3 1.5E-12 5.3E-17 98.7 2.5 55 123-178 5-63 (133)
28 2ecw_A Tripartite motif-contai 99.2 8.6E-12 2.9E-16 87.6 5.7 50 123-176 17-72 (85)
29 2ysj_A Tripartite motif-contai 99.2 9.4E-12 3.2E-16 83.1 5.4 43 123-169 18-63 (63)
30 3lrq_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 92.8 4.1 48 125-176 22-71 (100)
31 1t1h_A Gspef-atpub14, armadill 99.2 8.1E-12 2.8E-16 86.9 5.1 50 123-176 6-56 (78)
32 2ecv_A Tripartite motif-contai 99.2 8.5E-12 2.9E-16 87.6 5.3 50 123-176 17-72 (85)
33 4ap4_A E3 ubiquitin ligase RNF 99.2 3E-12 1E-16 97.1 2.9 53 123-176 70-126 (133)
34 2egp_A Tripartite motif-contai 99.2 2.4E-12 8.4E-17 89.6 1.3 50 123-176 10-66 (79)
35 1g25_A CDK-activating kinase a 99.2 9.1E-12 3.1E-16 83.8 3.8 51 125-176 3-56 (65)
36 2y43_A E3 ubiquitin-protein li 99.2 1E-11 3.4E-16 90.5 4.3 47 125-175 22-69 (99)
37 2ecj_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 81.0 4.2 43 123-169 13-58 (58)
38 2ckl_A Polycomb group ring fin 99.2 1.2E-11 4.3E-16 91.4 3.5 50 124-176 14-63 (108)
39 2ckl_B Ubiquitin ligase protei 99.1 3E-11 1E-15 95.9 4.6 48 125-175 54-102 (165)
40 3fl2_A E3 ubiquitin-protein li 99.1 2.9E-11 1E-15 91.5 4.3 47 125-175 52-99 (124)
41 3ztg_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 86.3 4.4 49 123-174 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 99.1 4.3E-11 1.5E-15 88.6 4.3 48 125-176 21-71 (112)
43 2vje_A E3 ubiquitin-protein li 99.0 9.3E-11 3.2E-15 79.0 3.5 48 124-175 7-57 (64)
44 1z6u_A NP95-like ring finger p 99.0 1.1E-10 3.7E-15 91.7 4.3 48 125-176 78-126 (150)
45 1e4u_A Transcriptional repress 99.0 2E-10 6.8E-15 80.6 4.9 53 123-176 9-63 (78)
46 3hct_A TNF receptor-associated 99.0 9E-11 3.1E-15 88.2 3.1 50 123-176 16-66 (118)
47 1rmd_A RAG1; V(D)J recombinati 99.0 1.4E-10 4.7E-15 86.7 4.0 48 125-176 23-71 (116)
48 3l11_A E3 ubiquitin-protein li 99.0 5E-11 1.7E-15 89.0 1.1 47 125-175 15-62 (115)
49 2y1n_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 101.5 5.9 49 124-176 331-380 (389)
50 2vje_B MDM4 protein; proto-onc 99.0 2.4E-10 8.4E-15 76.7 2.9 50 124-175 6-56 (63)
51 3k1l_B Fancl; UBC, ring, RWD, 99.0 2.4E-10 8.3E-15 100.2 3.5 57 122-178 305-376 (381)
52 1bor_A Transcription factor PM 98.9 2.2E-10 7.4E-15 75.1 2.1 47 123-176 4-50 (56)
53 2kr4_A Ubiquitin conjugation f 98.9 6.8E-10 2.3E-14 78.9 4.4 49 124-176 13-61 (85)
54 3knv_A TNF receptor-associated 98.9 4.1E-10 1.4E-14 87.5 3.0 49 123-175 29-78 (141)
55 2kre_A Ubiquitin conjugation f 98.9 9.4E-10 3.2E-14 80.7 3.9 48 124-175 28-75 (100)
56 1wgm_A Ubiquitin conjugation f 98.9 1.4E-09 4.8E-14 79.4 4.2 49 124-176 21-70 (98)
57 1jm7_B BARD1, BRCA1-associated 98.9 5.6E-10 1.9E-14 83.7 1.6 45 125-175 22-67 (117)
58 4ic3_A E3 ubiquitin-protein li 98.8 9.5E-10 3.2E-14 76.0 2.5 44 125-176 24-68 (74)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.8 1.7E-09 5.9E-14 72.0 3.6 48 123-174 4-58 (60)
60 2ea5_A Cell growth regulator w 98.7 1.3E-08 4.3E-13 69.4 4.9 46 123-176 13-59 (68)
61 2yu4_A E3 SUMO-protein ligase 98.7 9.9E-09 3.4E-13 74.1 4.3 47 123-172 5-59 (94)
62 3hcs_A TNF receptor-associated 98.7 5.5E-09 1.9E-13 83.0 3.1 50 123-176 16-66 (170)
63 1wim_A KIAA0161 protein; ring 98.7 5.5E-09 1.9E-13 75.2 2.8 52 124-176 4-67 (94)
64 2ecg_A Baculoviral IAP repeat- 98.7 1E-08 3.4E-13 70.9 3.1 44 125-176 25-69 (75)
65 2c2l_A CHIP, carboxy terminus 98.7 1.4E-08 4.6E-13 85.9 4.4 49 124-176 207-256 (281)
66 2yho_A E3 ubiquitin-protein li 98.5 2.3E-08 8E-13 70.0 2.0 44 125-176 18-62 (79)
67 2f42_A STIP1 homology and U-bo 98.5 7.2E-08 2.5E-12 77.7 3.9 50 123-176 104-154 (179)
68 2bay_A PRE-mRNA splicing facto 98.4 1.6E-07 5.5E-12 62.5 3.2 49 125-176 3-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.4 8.7E-08 3E-12 84.7 1.8 45 124-176 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 4.9E-07 1.7E-11 76.7 3.3 49 124-175 180-232 (267)
71 3nw0_A Non-structural maintena 98.0 6.6E-06 2.3E-10 69.0 5.6 49 123-174 178-228 (238)
72 3vk6_A E3 ubiquitin-protein li 97.9 5.5E-06 1.9E-10 60.0 3.3 49 127-178 3-52 (101)
73 2lri_C Autoimmune regulator; Z 96.6 0.002 6.7E-08 43.2 3.8 49 123-175 10-62 (66)
74 2ko5_A Ring finger protein Z; 94.4 0.078 2.7E-06 37.7 5.3 48 124-176 27-74 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 94.2 0.03 1E-06 39.8 3.1 34 125-159 3-36 (101)
76 1we9_A PHD finger family prote 93.2 0.024 8.2E-07 37.2 0.9 49 123-171 4-57 (64)
77 1wil_A KIAA1045 protein; ring 93.1 0.1 3.5E-06 36.4 3.9 35 123-159 13-47 (89)
78 2l5u_A Chromodomain-helicase-D 92.4 0.082 2.8E-06 34.5 2.7 45 123-171 9-57 (61)
79 3o36_A Transcription intermedi 92.3 0.068 2.3E-06 42.4 2.6 47 124-174 3-53 (184)
80 2puy_A PHD finger protein 21A; 92.1 0.02 6.7E-07 37.3 -0.7 50 123-176 3-56 (60)
81 3u5n_A E3 ubiquitin-protein li 91.7 0.041 1.4E-06 44.6 0.7 47 123-173 5-55 (207)
82 3lqh_A Histone-lysine N-methyl 91.1 0.099 3.4E-06 41.8 2.3 50 126-175 3-66 (183)
83 1mm2_A MI2-beta; PHD, zinc fin 90.7 0.07 2.4E-06 34.8 0.9 46 123-172 7-56 (61)
84 2k16_A Transcription initiatio 89.7 0.083 2.8E-06 35.7 0.6 50 124-174 17-70 (75)
85 2yql_A PHD finger protein 21A; 89.0 0.065 2.2E-06 34.2 -0.3 45 123-171 7-55 (56)
86 2knc_A Integrin alpha-IIB; tra 88.4 1.6 5.6E-05 27.7 6.0 32 51-82 12-43 (54)
87 1wep_A PHF8; structural genomi 88.1 0.53 1.8E-05 32.0 3.9 51 123-174 10-65 (79)
88 2vpb_A Hpygo1, pygopus homolog 88.0 0.38 1.3E-05 31.7 3.0 36 123-158 6-42 (65)
89 2l43_A N-teminal domain from h 87.6 0.22 7.4E-06 34.9 1.6 50 123-172 23-75 (88)
90 3v43_A Histone acetyltransfera 87.5 0.2 6.7E-06 36.6 1.4 45 127-171 63-111 (112)
91 1xwh_A Autoimmune regulator; P 87.4 0.13 4.4E-06 34.0 0.3 45 123-171 6-54 (66)
92 1f62_A Transcription factor WS 87.0 0.39 1.3E-05 29.7 2.5 44 127-171 2-49 (51)
93 2e6r_A Jumonji/ARID domain-con 86.8 0.079 2.7E-06 37.5 -1.0 62 123-185 14-79 (92)
94 2ysm_A Myeloid/lymphoid or mix 86.6 0.28 9.5E-06 35.6 1.8 47 123-170 5-55 (111)
95 2yt5_A Metal-response element- 86.2 0.41 1.4E-05 31.2 2.4 50 123-172 4-61 (66)
96 2l8s_A Integrin alpha-1; trans 86.2 1.7 5.9E-05 27.6 5.1 32 51-82 9-40 (54)
97 1fp0_A KAP-1 corepressor; PHD 85.9 0.4 1.4E-05 33.7 2.2 46 123-172 23-72 (88)
98 2kgg_A Histone demethylase jar 85.0 0.4 1.4E-05 30.0 1.7 44 127-170 4-52 (52)
99 3v43_A Histone acetyltransfera 84.8 1.9 6.5E-05 31.2 5.6 47 125-171 5-63 (112)
100 2ri7_A Nucleosome-remodeling f 83.9 0.22 7.5E-06 38.9 0.1 49 123-172 6-59 (174)
101 2ro1_A Transcription intermedi 83.0 0.31 1.1E-05 38.9 0.7 44 125-172 2-49 (189)
102 2e6s_A E3 ubiquitin-protein li 81.6 0.4 1.4E-05 32.7 0.7 45 126-171 27-76 (77)
103 1wev_A Riken cDNA 1110020M19; 81.4 0.34 1.2E-05 33.9 0.3 50 125-174 16-74 (88)
104 2ku3_A Bromodomain-containing 80.9 2 6.7E-05 28.7 4.0 49 123-171 14-65 (71)
105 2lbm_A Transcriptional regulat 80.6 2.1 7.1E-05 32.7 4.5 47 122-172 60-117 (142)
106 2kwj_A Zinc finger protein DPF 80.4 0.76 2.6E-05 33.5 2.0 45 126-170 2-59 (114)
107 1wee_A PHD finger family prote 79.9 0.3 1E-05 32.7 -0.4 48 124-172 15-66 (72)
108 3asl_A E3 ubiquitin-protein li 79.6 0.5 1.7E-05 31.6 0.6 44 127-171 20-68 (70)
109 1wem_A Death associated transc 79.1 1 3.6E-05 30.2 2.2 47 125-173 16-71 (76)
110 1g47_A Pinch protein; LIM doma 77.9 2.7 9.2E-05 27.6 4.0 43 124-176 10-52 (77)
111 3ql9_A Transcriptional regulat 76.9 3.1 0.0001 31.2 4.4 47 122-172 54-111 (129)
112 1z2q_A LM5-1; membrane protein 76.5 3 0.0001 28.5 4.0 37 123-159 19-55 (84)
113 2k1a_A Integrin alpha-IIB; sin 76.4 3.5 0.00012 24.8 3.7 29 51-79 10-38 (42)
114 4gne_A Histone-lysine N-methyl 76.3 2.3 7.8E-05 30.8 3.5 48 123-176 13-66 (107)
115 3o70_A PHD finger protein 13; 76.1 0.81 2.8E-05 30.3 0.9 47 123-171 17-66 (68)
116 2yw8_A RUN and FYVE domain-con 75.4 2.1 7.2E-05 29.2 2.9 37 123-159 17-53 (82)
117 3t7l_A Zinc finger FYVE domain 75.1 2.6 8.8E-05 29.4 3.4 50 125-174 20-75 (90)
118 3m62_A Ubiquitin conjugation f 74.5 2.5 8.5E-05 41.7 4.2 49 124-176 890-939 (968)
119 1wfk_A Zinc finger, FYVE domai 74.3 2.3 7.8E-05 29.6 2.9 53 123-175 7-66 (88)
120 1x4u_A Zinc finger, FYVE domai 74.3 2.7 9.3E-05 28.7 3.3 36 123-158 12-47 (84)
121 1x4k_A Skeletal muscle LIM-pro 73.8 3 0.0001 26.9 3.3 42 125-176 5-46 (72)
122 1y02_A CARP2, FYVE-ring finger 73.3 0.54 1.8E-05 34.9 -0.6 49 124-172 18-66 (120)
123 2xb1_A Pygopus homolog 2, B-ce 73.3 2.2 7.4E-05 30.7 2.7 49 125-173 3-62 (105)
124 2lv9_A Histone-lysine N-methyl 73.1 1.5 5.1E-05 31.1 1.7 46 125-172 28-76 (98)
125 3shb_A E3 ubiquitin-protein li 72.9 0.68 2.3E-05 31.6 -0.1 44 127-171 28-76 (77)
126 1joc_A EEA1, early endosomal a 72.5 2 7E-05 31.8 2.4 34 125-158 69-102 (125)
127 1x61_A Thyroid receptor intera 72.5 4.4 0.00015 26.1 3.9 40 125-174 5-44 (72)
128 1vfy_A Phosphatidylinositol-3- 72.2 2.9 9.8E-05 27.8 2.9 33 126-158 12-44 (73)
129 1wen_A Inhibitor of growth fam 71.4 3.1 0.00011 27.7 2.9 45 123-172 14-65 (71)
130 1x4l_A Skeletal muscle LIM-pro 70.8 4.5 0.00015 26.1 3.6 41 125-175 5-47 (72)
131 1z60_A TFIIH basal transcripti 70.5 2.2 7.7E-05 27.5 2.0 42 126-169 16-58 (59)
132 1wyh_A SLIM 2, skeletal muscle 70.1 3.3 0.00011 26.7 2.9 42 125-176 5-46 (72)
133 2dj7_A Actin-binding LIM prote 69.4 5.8 0.0002 26.5 4.0 40 124-174 14-53 (80)
134 1dvp_A HRS, hepatocyte growth 69.0 2.6 9E-05 34.0 2.6 35 125-159 161-195 (220)
135 3ask_A E3 ubiquitin-protein li 69.0 1.4 4.7E-05 36.3 0.8 45 126-171 175-224 (226)
136 1x63_A Skeletal muscle LIM-pro 68.9 4.3 0.00015 26.9 3.3 42 125-176 15-56 (82)
137 1x64_A Alpha-actinin-2 associa 68.0 7.7 0.00026 26.2 4.5 41 124-176 24-64 (89)
138 2cu8_A Cysteine-rich protein 2 67.1 4.9 0.00017 26.3 3.2 42 124-176 8-49 (76)
139 1weu_A Inhibitor of growth fam 67.0 2.9 9.8E-05 29.4 2.1 45 123-172 34-85 (91)
140 3f6q_B LIM and senescent cell 66.9 4.6 0.00016 25.8 3.0 42 125-176 11-52 (72)
141 3zyq_A Hepatocyte growth facto 66.4 3.1 0.00011 33.9 2.5 35 125-159 164-198 (226)
142 1iml_A CRIP, cysteine rich int 65.3 2.6 9E-05 27.7 1.6 26 127-155 2-27 (76)
143 1x68_A FHL5 protein; four-and- 64.9 6.6 0.00022 25.7 3.5 41 125-175 5-47 (76)
144 2co8_A NEDD9 interacting prote 61.8 6.4 0.00022 26.3 3.1 43 124-177 14-56 (82)
145 2l3k_A Rhombotin-2, linker, LI 60.7 5.6 0.00019 28.8 2.8 28 127-156 10-37 (123)
146 2cs3_A Protein C14ORF4, MY039 60.2 26 0.00088 24.1 5.7 39 123-162 13-52 (93)
147 1wew_A DNA-binding family prot 60.1 3.6 0.00012 27.7 1.5 49 123-173 14-73 (78)
148 3mpx_A FYVE, rhogef and PH dom 59.6 1.9 6.5E-05 38.0 0.0 36 125-160 375-410 (434)
149 1zbd_B Rabphilin-3A; G protein 58.3 6 0.0002 29.7 2.6 35 123-157 53-88 (134)
150 1weo_A Cellulose synthase, cat 58.2 19 0.00065 25.1 4.9 51 124-174 15-69 (93)
151 2gmg_A Hypothetical protein PF 56.7 2.2 7.7E-05 30.8 -0.0 27 146-177 72-98 (105)
152 2ysm_A Myeloid/lymphoid or mix 55.6 2.1 7.1E-05 30.7 -0.4 45 127-172 56-104 (111)
153 3c6w_A P28ING5, inhibitor of g 55.6 2.5 8.5E-05 27.1 0.0 43 124-171 8-57 (59)
154 2egq_A FHL1 protein; LIM domai 53.9 11 0.00039 24.4 3.2 41 125-175 15-58 (77)
155 3o7a_A PHD finger protein 13 v 53.3 2.7 9.2E-05 26.0 -0.1 42 130-172 8-52 (52)
156 2kwj_A Zinc finger protein DPF 52.9 1.2 4.2E-05 32.4 -2.0 47 127-174 60-110 (114)
157 2vnf_A ING 4, P29ING4, inhibit 52.8 2.7 9.4E-05 26.9 -0.1 43 124-171 9-58 (60)
158 1a7i_A QCRP2 (LIM1); LIM domai 52.7 4.7 0.00016 26.7 1.1 41 125-176 7-47 (81)
159 2dar_A PDZ and LIM domain prot 52.7 12 0.0004 25.3 3.2 40 124-175 24-63 (90)
160 2knc_B Integrin beta-3; transm 52.7 20 0.00068 24.3 4.3 21 55-75 14-34 (79)
161 3kqi_A GRC5, PHD finger protei 51.8 2.8 9.6E-05 28.0 -0.2 47 125-172 10-61 (75)
162 3a1b_A DNA (cytosine-5)-methyl 51.5 12 0.00042 28.9 3.4 34 123-160 77-112 (159)
163 2d8y_A Eplin protein; LIM doma 50.7 11 0.00036 25.6 2.7 41 125-176 15-55 (91)
164 2d8x_A Protein pinch; LIM doma 50.5 14 0.00047 23.5 3.1 41 124-176 4-44 (70)
165 2ehe_A Four and A half LIM dom 50.5 11 0.00038 24.8 2.7 41 125-175 15-55 (82)
166 2cup_A Skeletal muscle LIM-pro 50.4 15 0.00051 25.1 3.5 11 126-136 6-16 (101)
167 1zfo_A LAsp-1; LIM domain, zin 49.6 4.6 0.00016 22.2 0.5 28 126-156 4-31 (31)
168 1x62_A C-terminal LIM domain p 49.2 15 0.0005 24.1 3.2 39 125-175 15-53 (79)
169 2cor_A Pinch protein; LIM doma 49.2 17 0.00057 23.9 3.5 41 124-176 14-54 (79)
170 2rsd_A E3 SUMO-protein ligase 48.9 2.1 7.3E-05 28.1 -1.2 45 125-171 10-64 (68)
171 2d8v_A Zinc finger FYVE domain 47.2 20 0.00068 23.6 3.4 32 123-159 6-38 (67)
172 2pv0_B DNA (cytosine-5)-methyl 46.6 15 0.00051 32.5 3.6 46 123-172 91-148 (386)
173 2zet_C Melanophilin; complex, 46.5 9.8 0.00033 29.2 2.1 47 124-171 67-116 (153)
174 2g6q_A Inhibitor of growth pro 45.7 4.5 0.00015 26.1 0.1 43 124-171 10-59 (62)
175 2rgt_A Fusion of LIM/homeobox 44.7 11 0.00036 28.8 2.1 39 126-174 66-104 (169)
176 1zza_A Stannin, AG8_1; helix, 44.2 70 0.0024 21.4 6.4 21 64-84 24-44 (90)
177 2jvx_A NF-kappa-B essential mo 44.1 4.5 0.00016 22.1 -0.1 14 163-176 3-16 (28)
178 3kv5_D JMJC domain-containing 43.4 4.8 0.00017 36.7 -0.1 50 124-174 36-90 (488)
179 2cur_A Skeletal muscle LIM-pro 42.4 27 0.00091 22.0 3.5 38 125-174 5-42 (69)
180 2k9j_B Integrin beta-3; transm 41.9 39 0.0013 20.1 3.9 23 54-76 12-34 (43)
181 2l4z_A DNA endonuclease RBBP8, 41.7 14 0.00047 26.9 2.2 40 125-175 61-100 (123)
182 2d8z_A Four and A half LIM dom 41.5 19 0.00064 22.8 2.7 39 125-175 5-43 (70)
183 2o35_A Hypothetical protein DU 41.2 11 0.00038 26.9 1.5 12 150-161 42-53 (105)
184 3fyb_A Protein of unknown func 40.9 11 0.00038 26.8 1.5 12 150-161 41-52 (104)
185 1v6g_A Actin binding LIM prote 40.0 23 0.00077 23.2 3.0 39 126-176 16-54 (81)
186 2jtn_A LIM domain-binding prot 39.5 15 0.0005 28.4 2.2 45 125-175 87-131 (182)
187 1x6a_A LIMK-2, LIM domain kina 39.2 17 0.00059 23.7 2.3 39 125-175 15-53 (81)
188 1rut_X Flinc4, fusion protein 38.9 15 0.00052 28.5 2.2 37 127-173 71-107 (188)
189 2pk7_A Uncharacterized protein 38.8 7 0.00024 25.9 0.2 21 156-176 1-21 (69)
190 1wig_A KIAA1808 protein; LIM d 38.3 33 0.0011 22.0 3.6 38 125-174 5-42 (73)
191 1nyp_A Pinch protein; LIM doma 37.5 14 0.00049 23.1 1.5 39 125-175 5-43 (66)
192 2xjy_A Rhombotin-2; oncoprotei 37.0 16 0.00054 26.3 1.9 27 127-155 68-94 (131)
193 2iyb_E Testin, TESS, TES; LIM 36.7 16 0.00056 22.9 1.7 40 126-175 3-44 (65)
194 1afo_A Glycophorin A; integral 36.6 60 0.002 19.0 3.9 24 51-74 12-35 (40)
195 2jmi_A Protein YNG1, ING1 homo 36.0 12 0.00041 26.1 1.0 44 123-171 24-75 (90)
196 2cuq_A Four and A half LIM dom 34.8 28 0.00096 22.6 2.8 38 125-174 15-52 (80)
197 1wd2_A Ariadne-1 protein homol 34.7 7.1 0.00024 25.0 -0.3 36 125-160 6-45 (60)
198 2dlo_A Thyroid receptor-intera 33.1 30 0.001 22.5 2.7 39 125-175 15-53 (81)
199 2jmo_A Parkin; IBR, E3 ligase, 32.2 8.7 0.0003 25.9 -0.2 20 140-159 44-68 (80)
200 2jny_A Uncharacterized BCR; st 32.2 7.2 0.00025 25.7 -0.6 20 157-176 4-23 (67)
201 2klu_A T-cell surface glycopro 32.0 48 0.0016 21.8 3.3 7 70-76 25-31 (70)
202 1j2o_A FLIN2, fusion of rhombo 31.6 33 0.0011 24.1 2.9 32 126-159 31-63 (114)
203 2jo1_A Phospholemman; FXYD1, N 31.4 86 0.0029 20.7 4.5 21 52-72 15-35 (72)
204 3i2d_A E3 SUMO-protein ligase 30.3 49 0.0017 29.0 4.2 46 126-174 250-299 (371)
205 1b8t_A Protein (CRP1); LIM dom 30.2 26 0.0009 27.1 2.3 40 125-175 115-154 (192)
206 2ct7_A Ring finger protein 31; 30.2 8.4 0.00029 26.3 -0.6 24 141-164 43-66 (86)
207 3pwf_A Rubrerythrin; non heme 29.1 26 0.0009 27.0 2.1 24 141-171 138-161 (170)
208 2xqn_T Testin, TESS; metal-bin 28.1 38 0.0013 24.0 2.7 11 127-137 65-75 (126)
209 1x3h_A Leupaxin; paxillin fami 27.9 39 0.0013 21.8 2.6 40 125-176 15-54 (80)
210 4fo9_A E3 SUMO-protein ligase 27.9 57 0.0019 28.5 4.2 47 126-175 216-266 (360)
211 3mjh_B Early endosome antigen 26.6 16 0.00056 20.7 0.3 13 165-177 7-19 (34)
212 2kpi_A Uncharacterized protein 26.3 21 0.00073 22.4 0.9 12 126-137 11-22 (56)
213 2l9u_A Receptor tyrosine-prote 24.5 1E+02 0.0036 17.5 4.8 26 48-73 4-29 (40)
214 2jr6_A UPF0434 protein NMA0874 24.4 7.2 0.00025 25.8 -1.7 19 158-176 3-21 (68)
215 1lko_A Rubrerythrin all-iron(I 23.9 21 0.00073 28.0 0.7 22 145-172 159-180 (191)
216 3kv4_A PHD finger protein 8; e 23.4 15 0.00051 33.0 -0.4 46 130-175 9-59 (447)
217 2jyp_A Aragonite protein AP7; 23.3 35 0.0012 18.9 1.3 18 125-142 9-26 (36)
218 1yuz_A Nigerythrin; rubrythrin 23.2 39 0.0013 26.8 2.1 25 141-172 171-195 (202)
219 2k21_A Potassium voltage-gated 23.0 1.6E+02 0.0055 21.8 5.2 10 6-15 20-29 (138)
220 2hf1_A Tetraacyldisaccharide-1 22.4 7.2 0.00025 25.8 -2.0 19 158-176 3-21 (68)
221 1m3v_A FLIN4, fusion of the LI 22.2 87 0.003 22.1 3.7 51 126-178 33-84 (122)
222 2zxe_G FXYD10, phospholemman-l 21.7 1.3E+02 0.0046 20.0 4.1 22 51-72 17-38 (74)
223 2js4_A UPF0434 protein BB2007; 20.7 7.9 0.00027 25.7 -2.1 19 158-176 3-21 (70)
224 2jne_A Hypothetical protein YF 20.3 25 0.00086 24.9 0.3 41 126-175 33-73 (101)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=130.04 Aligned_cols=78 Identities=29% Similarity=0.670 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHhcCCcccccccccCCCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 97 GKSSGIQQESLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 97 ~~~~g~~~~~l~~lp~~~~~~~~~~~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
....+..++.++++|.+.+.........+.+|+||+++|..++.++.+| |||.||..||+.|++.+.+||+||..+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3678899999999999999877665667789999999999999999998 99999999999999999999999998765
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.6e-18 Score=117.94 Aligned_cols=69 Identities=38% Similarity=0.885 Sum_probs=58.4
Q ss_pred HHhcCCcccccccccCCCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 106 SLRDFPVVNYSTELKLSGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 106 ~l~~lp~~~~~~~~~~~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.++.+|..++..... ..++.+|+||+++|..++.++.+| |+|.||..||+.|++.+.+||+||+.+.+.
T Consensus 5 ~i~~lp~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSC-SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccc-cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 356678887765433 345678999999999999999998 999999999999999999999999988764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=5.8e-17 Score=105.90 Aligned_cols=52 Identities=50% Similarity=1.213 Sum_probs=47.3
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
+++.+|+||+++|.+++.++.++.|||.||..||..|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3467899999999999988888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-16 Score=108.20 Aligned_cols=53 Identities=34% Similarity=0.930 Sum_probs=48.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
..+.+|+||+++|.+++.+++++ |+|.||..||..|++.+.+||+||..+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 44678999999999989999998 999999999999999999999999988765
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-16 Score=106.28 Aligned_cols=54 Identities=41% Similarity=0.940 Sum_probs=48.7
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.....+|+||++.|..++.++.++ |||.||..||..|++.+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999888899998 999999999999999999999999988754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=111.04 Aligned_cols=53 Identities=26% Similarity=0.743 Sum_probs=44.5
Q ss_pred CCCcCcccCCCCCC-----------CCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAP-----------GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~-----------~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
++..|+||+++|.+ ++.++.++.|+|.||..||++||+.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45679999998854 455667767999999999999999999999999987654
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1e-15 Score=107.02 Aligned_cols=53 Identities=53% Similarity=1.091 Sum_probs=48.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....+|+||+++|.+++.++.++ |+|.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 44678999999999988889998 999999999999999999999999998765
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.54 E-value=6.1e-15 Score=96.06 Aligned_cols=51 Identities=29% Similarity=0.685 Sum_probs=43.7
Q ss_pred CCCCcCcccCCCCCCCC-ceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGE-SLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~-~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
..+.+|+||+++|.+++ .++.++ |+|.||..||..|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34678999999996644 567777 9999999999999998899999998764
No 9
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.2e-15 Score=103.68 Aligned_cols=55 Identities=29% Similarity=0.661 Sum_probs=45.6
Q ss_pred cCCCCCCcCcccCCCCCCCCceeecCCCC-----cccChhHHHHHHhcC--CCCcccccccccc
Q 046833 120 KLSGSDTECVICLSEFAPGESLRVLPKCN-----HGFHVHCIDKWLRSH--SSCPKCRHCLIET 176 (218)
Q Consensus 120 ~~~~~~~~CaICL~ef~~~~~vr~lp~C~-----H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 176 (218)
....++.+|.|||++|++++.+ ++| |+ |.||..||++||..+ .+||+||..+.-.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3345567899999999887776 588 96 999999999999655 5899999988754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=98.78 Aligned_cols=52 Identities=23% Similarity=0.646 Sum_probs=44.1
Q ss_pred CCCCcCcccCCCCCCC----CceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 123 GSDTECVICLSEFAPG----ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
....+|+||++.|.+. ..+..++ |||.||..||+.|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999999653 3456787 99999999999999999999999998753
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.49 E-value=1.5e-14 Score=108.07 Aligned_cols=51 Identities=27% Similarity=0.732 Sum_probs=42.0
Q ss_pred CCcCcccCCCCCCCC---------------ceeecCCCCcccChhHHHHHH-----hcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGE---------------SLRVLPKCNHGFHVHCIDKWL-----RSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~---------------~vr~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~l~~~ 176 (218)
+.+|+|||++|.+.. .++.++ |+|+||..||+.|+ ..+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999996643 344676 99999999999999 4567899999988755
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.49 E-value=2.1e-14 Score=106.79 Aligned_cols=51 Identities=29% Similarity=0.621 Sum_probs=43.0
Q ss_pred CCCCcCcccCCCCCCC---------------CceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPG---------------ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~---------------~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
..+..|+||+++|.+. ..++.++ |+|.||..||+.||+.+.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3567899999999754 1356676 9999999999999999999999999853
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.48 E-value=8.9e-15 Score=100.07 Aligned_cols=53 Identities=25% Similarity=0.704 Sum_probs=45.2
Q ss_pred CCCCcCcccCCCCCC----CCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAP----GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.++.+|+||++++.+ ++.+..++ |||.||..||+.|++.+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 456789999999865 35557777 999999999999999999999999988754
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.47 E-value=7.2e-14 Score=94.87 Aligned_cols=51 Identities=31% Similarity=0.775 Sum_probs=43.9
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
+.+.+|+||++.+.+ .+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 346789999999854 357787 999999999999999999999999988754
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.45 E-value=1.8e-14 Score=96.33 Aligned_cols=52 Identities=25% Similarity=0.700 Sum_probs=44.3
Q ss_pred CCCcCcccCCCCCC----CCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAP----GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
++.+|+||++.+.+ ++.+..++ |||.||..||..|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 35789999999965 24557777 999999999999999999999999988754
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.6e-14 Score=96.45 Aligned_cols=49 Identities=41% Similarity=0.959 Sum_probs=43.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....+|+||++.+.+ ..++ |||.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 446789999999866 6777 999999999999999999999999988754
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=8.2e-14 Score=95.70 Aligned_cols=50 Identities=30% Similarity=0.549 Sum_probs=43.3
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....+|+||++.+.+ ...++ |||.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 446789999999855 46677 999999999999999999999999988754
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=93.33 Aligned_cols=51 Identities=25% Similarity=0.539 Sum_probs=42.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.....|+||++.+.+ .+.+++ |||.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345789999999865 343346 999999999999999899999999988654
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.39 E-value=4.1e-14 Score=106.94 Aligned_cols=52 Identities=31% Similarity=0.676 Sum_probs=1.5
Q ss_pred CCCCcCcccCCCCCC-------------CCc-eeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAP-------------GES-LRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~-------------~~~-vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
..++.|+||+++|.+ ++. .++++.|+|.||..||+.||+.+.+||+||..+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 446789999999975 222 2232349999999999999999999999999853
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.9e-13 Score=95.43 Aligned_cols=53 Identities=30% Similarity=0.630 Sum_probs=45.0
Q ss_pred CCCCcCcccCCCCCCCCc-eeecCCCCcccChhHHHHHHhcC---CCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGES-LRVLPKCNHGFHVHCIDKWLRSH---SSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~-vr~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~ 176 (218)
.+..+|+||++.|.+++. .+.++ |||.||..||..|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 446789999999988765 67787 99999999999999875 7899999987543
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.9e-13 Score=92.66 Aligned_cols=48 Identities=25% Similarity=0.453 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
.....|+||++.|.+ ..+++ |||.||..||..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 446789999999955 45677 9999999999999999999999999875
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=90.51 Aligned_cols=51 Identities=24% Similarity=0.595 Sum_probs=41.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC--CCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH--SSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 176 (218)
.....|+||++.|.+ ...++.|||.||..||..|++.+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 345789999999965 44576699999999999999765 6899999975544
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=89.11 Aligned_cols=50 Identities=24% Similarity=0.617 Sum_probs=41.7
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh---cCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR---SHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~~ 176 (218)
....+|+||++.+.+ ...++ |||.||..||..|++ .+.+||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 446789999999864 55677 999999999999996 456899999987654
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=90.42 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=42.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC--CCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH--SSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~ 176 (218)
+...+|+||.+.|..++... .|+|.||..||++||+.+ .+||+||......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 44678999999998765443 599999999999999877 7899999876533
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=87.38 Aligned_cols=50 Identities=20% Similarity=0.564 Sum_probs=41.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH-hcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~ 176 (218)
.+...|+||++.+.+. ..++ |||.||..||..|+ ..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4467899999998653 3366 99999999999999 5667899999987654
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=1.2e-12 Score=101.23 Aligned_cols=48 Identities=31% Similarity=0.856 Sum_probs=42.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
+..|+||++.|.+ ...+| |||.||..||..|+..+.+||+||..+...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3579999999965 56788 999999999999999999999999988654
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.25 E-value=1.5e-12 Score=98.72 Aligned_cols=55 Identities=22% Similarity=0.582 Sum_probs=46.2
Q ss_pred CCCCcCcccCCCCCCC----CceeecCCCCcccChhHHHHHHhcCCCCcccccccccccc
Q 046833 123 GSDTECVICLSEFAPG----ESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCE 178 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~----~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (218)
.+..+|+||++.|.+. +.++.++ |||.||..||+.|++.+.+||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3457899999999653 4557787 99999999999999999999999999876543
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=8.6e-12 Score=87.57 Aligned_cols=50 Identities=30% Similarity=0.547 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc------CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS------HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~~ 176 (218)
....+|+||++.|.+ ...++ |||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 346789999999865 34677 9999999999999977 67899999987643
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.4e-12 Score=83.14 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=36.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh---cCCCCccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR---SHSSCPKC 169 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCP~C 169 (218)
.++..|+||++.|.+ ..+++ |||.||..||..|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 456789999999875 45677 999999999999997 45689998
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=4.4e-12 Score=92.84 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=40.9
Q ss_pred CCcCcccCCCCCCCCceee-cCCCCcccChhHHHHHHhcC-CCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRV-LPKCNHGFHVHCIDKWLRSH-SSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~-lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~ 176 (218)
...|+||++.|.+ .+. ++ |||.||..||..|+..+ .+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 4689999999964 445 76 99999999999999877 6999999998643
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.23 E-value=8.1e-12 Score=86.91 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=42.0
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (218)
.....|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 346789999999965 45677 9999999999999986 78899999987643
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.5e-12 Score=87.58 Aligned_cols=50 Identities=30% Similarity=0.635 Sum_probs=42.1
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc------CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS------HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~~ 176 (218)
....+|+||++.+.+ ...++ |||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 346789999999865 44577 9999999999999976 77899999988753
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=3e-12 Score=97.12 Aligned_cols=53 Identities=25% Similarity=0.704 Sum_probs=44.8
Q ss_pred CCCCcCcccCCCCCC----CCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAP----GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~----~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
+...+|+||++.|.+ +.....++ |||.||..||+.|++.+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 456789999999865 23446676 999999999999999999999999998765
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-12 Score=89.55 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=41.8
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-------CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-------HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-------~~tCP~CR~~l~~~ 176 (218)
.+..+|+||++.|.+ ...++ |||.||..||..|+.. ..+||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 446789999999865 34577 9999999999999976 66899999988753
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=9.1e-12 Score=83.82 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=40.5
Q ss_pred CCcCcccCC-CCCCCCce-eecCCCCcccChhHHHHHHhc-CCCCcccccccccc
Q 046833 125 DTECVICLS-EFAPGESL-RVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~-ef~~~~~v-r~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (218)
+..|+||++ .+.+.... ..++ |||.||..||+.|+.. +.+||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 67665443 4566 9999999999999754 46799999988654
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=90.46 Aligned_cols=47 Identities=30% Similarity=0.723 Sum_probs=40.8
Q ss_pred CCcCcccCCCCCCCCceeec-CCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVL-PKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+||++.|.+ ...+ + |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4689999999965 4444 6 99999999999999988999999998775
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=80.95 Aligned_cols=43 Identities=28% Similarity=0.862 Sum_probs=35.7
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH---hcCCCCccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL---RSHSSCPKC 169 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl---~~~~tCP~C 169 (218)
.....|+||++.+.+. ..++ |||.||..||..|+ ..+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4467899999999763 4577 99999999999995 456789998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.16 E-value=1.2e-11 Score=91.41 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=42.0
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 35789999999864 344447 999999999999999999999999988753
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=3e-11 Score=95.88 Aligned_cols=48 Identities=35% Similarity=0.764 Sum_probs=40.4
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 175 (218)
...|+||++.|.+ .+..++ |||.||..||..|+.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4589999999975 344446 9999999999999986 7789999999854
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=91.54 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=40.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC-CCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS-SCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 175 (218)
...|+||++.|.+ ...++ |||.||..||..|+..+. +||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4689999999975 55677 999999999999997544 89999998865
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.13 E-value=3.5e-11 Score=86.28 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=40.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC--CCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH--SSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~ 174 (218)
.....|+||++.|.+ ...++.|||.||..||..|+..+ .+||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 446789999999865 45676699999999999999643 58999999874
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=4.3e-11 Score=88.61 Aligned_cols=48 Identities=29% Similarity=0.607 Sum_probs=39.9
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC---CCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS---SCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~---tCP~CR~~l~~~ 176 (218)
...|+||++.+.+ ...++ |||.||..||..|+..+. +||+||..+...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4689999999865 34577 999999999999997654 899999987754
No 43
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.05 E-value=9.3e-11 Score=79.05 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=40.2
Q ss_pred CCCcCcccCCCCCCCCceeec--CCCCcc-cChhHHHHHHhcCCCCccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVL--PKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~l--p~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
++.+|.||++++.+ ...+ | |||. |+..|+..|.+.+..||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 35689999998755 3444 8 9999 7999999999988999999998753
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=91.71 Aligned_cols=48 Identities=27% Similarity=0.580 Sum_probs=40.9
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC-CCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS-SCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~ 176 (218)
...|+||++.|.+ ...++ |||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4689999999865 45577 999999999999997654 899999988765
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.03 E-value=2e-10 Score=80.58 Aligned_cols=53 Identities=19% Similarity=0.461 Sum_probs=41.3
Q ss_pred CCCCcCcccCCCCCCCCc-eeecCCCCcccChhHHHHHHh-cCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGES-LRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~-vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 176 (218)
.++.+|+||++.+...+. +..++ |||.||..|+..|+. ....||.||..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 456789999999865432 22244 999999999999984 456899999988765
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=9e-11 Score=88.22 Aligned_cols=50 Identities=36% Similarity=0.654 Sum_probs=41.7
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC-CCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS-SCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~ 176 (218)
.....|+||++.+.+ ...++ |||.||..||..|+..+. +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 345689999999865 45677 999999999999997655 999999988754
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.03 E-value=1.4e-10 Score=86.74 Aligned_cols=48 Identities=33% Similarity=0.565 Sum_probs=40.9
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (218)
...|+||++.+.+ ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4689999999865 45577 9999999999999976 77999999988754
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=5e-11 Score=89.02 Aligned_cols=47 Identities=28% Similarity=0.678 Sum_probs=40.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~ 175 (218)
+..|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus 15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999865 55677 9999999999999965 6789999998864
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.00 E-value=3e-10 Score=101.55 Aligned_cols=49 Identities=27% Similarity=0.658 Sum_probs=42.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-cCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~ 176 (218)
...+|+||++.+.+ ...+| |||.||..||..|+. .+.+||+||..+...
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34789999999854 67788 999999999999998 788999999988765
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.96 E-value=2.4e-10 Score=76.72 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=39.7
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...+|.||++...+. .+..+| |||. |+..|+..|.+.+..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 356899999986441 122338 9998 9999999999888899999998754
No 51
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.96 E-value=2.4e-10 Score=100.17 Aligned_cols=57 Identities=23% Similarity=0.606 Sum_probs=43.6
Q ss_pred CCCCCcCcccCCCCCCCCcee----ecCCCCcccChhHHHHHHhcC-----------CCCcccccccccccc
Q 046833 122 SGSDTECVICLSEFAPGESLR----VLPKCNHGFHVHCIDKWLRSH-----------SSCPKCRHCLIETCE 178 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr----~lp~C~H~FH~~CI~~Wl~~~-----------~tCP~CR~~l~~~~~ 178 (218)
.+...+|+||++.+.++..+- ..++|+|.||..||.+||+.. .+||+||.++.-..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 356789999999998744332 223699999999999999642 359999998876544
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=2.2e-10 Score=75.06 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=39.3
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.+...|+||++.|.+ .+.++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 456789999999976 46788 9999999999884 67899999987654
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.93 E-value=6.8e-10 Score=78.91 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=43.0
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 46789999999976 66788 999999999999999889999999987643
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.91 E-value=4.1e-10 Score=87.50 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=40.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC-CCccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS-SCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~ 175 (218)
.....|+||++.+.+ ...++ |||.||..||..|+.... +||+||..+..
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 446789999999866 35576 999999999999997664 89999997643
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.89 E-value=9.4e-10 Score=80.65 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=42.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
....|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45789999999976 66788 99999999999999988999999998764
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.87 E-value=1.4e-09 Score=79.43 Aligned_cols=49 Identities=20% Similarity=0.101 Sum_probs=42.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCC-cccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCN-HGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.+..|+||++-|.+ ..+++ || |.|+..||..|+..+.+||+||..|...
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 45789999999976 56787 99 9999999999998889999999987643
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=5.6e-10 Score=83.71 Aligned_cols=45 Identities=22% Similarity=0.495 Sum_probs=38.4
Q ss_pred CCcCcccCCCCCCCCceeec-CCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVL-PKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~l-p~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+||++.|.+ ...+ + |||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 5789999999965 4455 6 999999999999987 789999998743
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=9.5e-10 Score=76.03 Aligned_cols=44 Identities=23% Similarity=0.619 Sum_probs=38.0
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
+..|+||++.+.+ ...+| |||. |+..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 4689999998755 66788 9999 999999999 8899999987654
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.84 E-value=1.7e-09 Score=72.01 Aligned_cols=48 Identities=25% Similarity=0.629 Sum_probs=37.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCC--c---ccChhHHHHHHhc--CCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCN--H---GFHVHCIDKWLRS--HSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~--H---~FH~~CI~~Wl~~--~~tCP~CR~~l~ 174 (218)
++...|.||+++. ++.+ ++| |. | .||..|+++|+.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999983 3334 577 65 4 9999999999953 678999998764
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=69.37 Aligned_cols=46 Identities=28% Similarity=0.759 Sum_probs=38.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
.+...|.||++...+ +..+| |||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 446789999998654 77898 9999 99999984 57899999988765
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=9.9e-09 Score=74.11 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=38.0
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC------CCCcc--cccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH------SSCPK--CRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~------~tCP~--CR~~ 172 (218)
.....|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 345789999999965 44564599999999999999653 48999 9865
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.70 E-value=5.5e-09 Score=82.98 Aligned_cols=50 Identities=36% Similarity=0.650 Sum_probs=41.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC-CCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH-SSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~ 176 (218)
.+...|+||++.|.+ ...++ |||.|+..||..|+... .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 345789999999865 45677 99999999999999654 4999999988764
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=5.5e-09 Score=75.24 Aligned_cols=52 Identities=25% Similarity=0.654 Sum_probs=41.8
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc--------CCCCcc--cccc--cccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS--------HSSCPK--CRHC--LIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCP~--CR~~--l~~~ 176 (218)
+..+|+||++++...+.+++.+ |||.|+..|+..|+.. ...||. |+.. +.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 4568999999998766666666 9999999999999853 237999 9988 5543
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1e-08 Score=70.89 Aligned_cols=44 Identities=23% Similarity=0.624 Sum_probs=36.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
..+|+||++.+.+ ...+| |||. |+..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4579999999755 66788 9999 99999964 47899999987653
No 65
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=1.4e-08 Score=85.89 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (218)
....|+||++-|.+ ..+++ |||.|+..||..|+.. +.+||+||..+...
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 46789999999966 66788 9999999999999975 45699999988643
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.53 E-value=2.3e-08 Score=69.97 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=37.6
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|.||++.+.+ +..+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4589999998755 77888 9999 999999987 4999999988765
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.49 E-value=7.2e-08 Score=77.69 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=41.3
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-CCCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-HSSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~ 176 (218)
.....|+||++-|.+ ..+++ |||.|...||..|+.. +.+||+||..+...
T Consensus 104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 345789999999976 56777 9999999999999976 35799999987643
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=1.6e-07 Score=62.51 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+||++.+.+ ..+++.+||+|...||.+|++.+.+||+++..|...
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 3579999999975 345523999999999999998888999999988655
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.37 E-value=8.7e-08 Score=84.66 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=38.6
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcc-cChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHG-FHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 45789999999865 67788 9999 999999998 7899999987644
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.9e-07 Score=76.70 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=39.2
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC--CCCcc--ccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH--SSCPK--CRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~--~tCP~--CR~~l~~ 175 (218)
....|+||++.|.+ .|+... |||.|++.||..|+..+ .+||+ ||..+..
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 45679999999954 455455 99999999999999754 46999 9997654
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.00 E-value=6.6e-06 Score=69.02 Aligned_cols=49 Identities=27% Similarity=0.673 Sum_probs=39.7
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC--CCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS--SCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~l~ 174 (218)
+...+|+||.+-+..|. ..+.|+|.||..|+..|++.+. +||.|+....
T Consensus 178 ~~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 34688999999988753 3445999999999999997654 8999998643
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.93 E-value=5.5e-06 Score=60.05 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=39.5
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-cCCCCcccccccccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-SHSSCPKCRHCLIETCE 178 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~~ 178 (218)
-|.+|--.+ ....|+.| |+|+|+-+|+..|.+ ..++||.|+..+..-+.
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 477776554 44678999 999999999999984 56789999998876554
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.59 E-value=0.002 Score=43.24 Aligned_cols=49 Identities=20% Similarity=0.434 Sum_probs=36.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC----CCccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS----SCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~~ 175 (218)
.....|.||.+ +..+.....|...||..|++..|.... .||.|+....+
T Consensus 10 ~~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 44578999974 344666777999999999998885433 69999765443
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.37 E-value=0.078 Score=37.74 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=39.1
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
+...|-.|+-+.+. ++.. .+|.++..|+..-|.....||+|+..|+..
T Consensus 27 G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 34679999977543 4332 579999999999999999999999999876
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.23 E-value=0.03 Score=39.78 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=25.5
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+..|.||++++.......-+. |+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998754433333366 9999999999983
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.23 E-value=0.024 Score=37.23 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=37.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-----cCCCCccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----SHSSCPKCRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~ 171 (218)
++...|+||...+.++..++....|..=||..|+..-.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456779999999876666777777999999999875432 3456999975
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.07 E-value=0.1 Score=36.43 Aligned_cols=35 Identities=20% Similarity=0.503 Sum_probs=24.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
..+..|.||- .+..++...- ..|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pC-RvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPC-RVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSC-SSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceecc-ccccccccHhhcccc
Confidence 4577899994 4444443322 239999999999996
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.44 E-value=0.082 Score=34.45 Aligned_cols=45 Identities=22% Similarity=0.668 Sum_probs=33.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc----CCCCccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS----HSSCPKCRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~ 171 (218)
..+..|.||... ..+.....|...||..|++.=+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999863 456666679999999999985532 225999964
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=92.33 E-value=0.068 Score=42.40 Aligned_cols=47 Identities=26% Similarity=0.497 Sum_probs=35.0
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCcccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l~ 174 (218)
++..|.||... ..+.....|.-.||..|++.-+... -.||.|+..-.
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 46789999843 3466777799999999998776432 35999987543
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.14 E-value=0.02 Score=37.27 Aligned_cols=50 Identities=22% Similarity=0.634 Sum_probs=35.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l~~~ 176 (218)
.++..|.||... ..+.....|...||..|++.=+... -.||.|+.....+
T Consensus 3 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 3 IHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CCCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 346789999863 3456666799999999998655332 2599997765544
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.71 E-value=0.041 Score=44.56 Aligned_cols=47 Identities=28% Similarity=0.483 Sum_probs=35.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRHCL 173 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l 173 (218)
.++..|.+|... ..+.....|...||..|++..+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999743 3477777899999999998876433 3599998643
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.11 E-value=0.099 Score=41.79 Aligned_cols=50 Identities=18% Similarity=0.382 Sum_probs=38.1
Q ss_pred CcCcccCCCCCCCCc---eeecCCCCcccChhHHHHH------Hh-----cCCCCccccccccc
Q 046833 126 TECVICLSEFAPGES---LRVLPKCNHGFHVHCIDKW------LR-----SHSSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef~~~~~---vr~lp~C~H~FH~~CI~~W------l~-----~~~tCP~CR~~l~~ 175 (218)
..|+||...|.+++. ++....|..=||..|+.-= +. ....||.|+..-.+
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 469999999988763 7777789999999998531 11 16789999886443
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.73 E-value=0.07 Score=34.81 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=32.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCcccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~ 172 (218)
.++..|.||... ..+.....|...||..|++.=+... -.||.|+..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456779999752 3455566699999999998654322 259999764
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.71 E-value=0.083 Score=35.69 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=36.3
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh----cCCCCcccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR----SHSSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~----~~~tCP~CR~~l~ 174 (218)
+...|.||.... +++.++....|.--||..|+..-.. ..-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699998765 3556677777999999999986553 2346999977543
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.04 E-value=0.065 Score=34.25 Aligned_cols=45 Identities=27% Similarity=0.752 Sum_probs=31.8
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (218)
.++..|.||... ..+.....|...||..|++.=+... -.||.|+.
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999864 3455666799999999998654322 24888853
No 86
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=88.44 E-value=1.6 Score=27.69 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCVFLRCSR 82 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~~~r~~~ 82 (218)
.++++++++..++++++.++.+++|-+.++.+
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 56667777777777778888888887655433
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.13 E-value=0.53 Score=32.04 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=36.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-----cCCCCcccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----SHSSCPKCRHCLI 174 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l~ 174 (218)
.....| ||...+.++..++....|..=||..|+.---. ....||.|+...-
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345567 99998865566667777999999999964321 3457999987543
No 88
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.05 E-value=0.38 Score=31.71 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=28.8
Q ss_pred CCCCcCcccCCCCCCCCceeecC-CCCcccChhHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLP-KCNHGFHVHCIDK 158 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp-~C~H~FH~~CI~~ 158 (218)
+....|.+|...+.+++..+... .|.--||..|+.-
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 44567999999998888888887 7999999999854
No 89
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=87.60 E-value=0.22 Score=34.93 Aligned_cols=50 Identities=20% Similarity=0.423 Sum_probs=35.2
Q ss_pred CCCCcCcccCCCC-CCCCceeecCCCCcccChhHHHHHHh--cCCCCcccccc
Q 046833 123 GSDTECVICLSEF-APGESLRVLPKCNHGFHVHCIDKWLR--SHSSCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef-~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCP~CR~~ 172 (218)
.++..|.||...- .+++.+.....|.-.||..|+..-+. ..-.||.|+..
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4567899998753 34456777778999999999986431 12258888654
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.45 E-value=0.2 Score=36.58 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=32.1
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRH 171 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (218)
.|.||...-.+++.+.....|...||..|++.=|..- -.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888886533445666777799999999998655332 25998874
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.41 E-value=0.13 Score=33.98 Aligned_cols=45 Identities=27% Similarity=0.667 Sum_probs=32.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc----CCCCccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS----HSSCPKCRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~ 171 (218)
.++..|.||... ..+.....|.-.||..|++.=+.. .-.||.|+.
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999863 346666679999999999865432 225999965
No 92
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.03 E-value=0.39 Score=29.70 Aligned_cols=44 Identities=27% Similarity=0.703 Sum_probs=30.5
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRH 171 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~ 171 (218)
.|.||...-. ++.+.....|...||..|++.=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5889986543 34566666799999999997544322 24888864
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.83 E-value=0.079 Score=37.53 Aligned_cols=62 Identities=24% Similarity=0.465 Sum_probs=40.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc----CCCCcccccccccccccccCCCC
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS----HSSCPKCRHCLIETCEESVGFSQ 185 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~l~~~~~~~~~~~~ 185 (218)
.+...|.||...-. .+.+.....|...||..|++.=|.. .-.||.|+..-.....+..|.++
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~~~~~~~Gf~~ 79 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQ 79 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHSCCSSCCSCCC
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccccCCccccChhh
Confidence 34567999987642 3456677779999999999854432 22599997754444444445544
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.58 E-value=0.28 Score=35.55 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=32.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc----CCCCcccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS----HSSCPKCR 170 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR 170 (218)
.++..|.||.+.-+. +.+.....|+..||..|++..+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 457889999876322 234455669999999999987632 22477665
No 95
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.23 E-value=0.41 Score=31.24 Aligned_cols=50 Identities=26% Similarity=0.678 Sum_probs=35.6
Q ss_pred CCCCcCcccCCCCC-CCCceeecCCCCcccChhHHHHHHh-------cCCCCcccccc
Q 046833 123 GSDTECVICLSEFA-PGESLRVLPKCNHGFHVHCIDKWLR-------SHSSCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~-~~~~vr~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~ 172 (218)
.++..|.||..... ++..+.....|.-.||..|+..=+. ..-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999997643 3456777778999999999886432 12358888653
No 96
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=86.15 E-value=1.7 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCVFLRCSR 82 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~~~r~~~ 82 (218)
.++++++++..++++++.++.+++|-+.++.+
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 55667777777777778888888887655433
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.93 E-value=0.4 Score=33.71 Aligned_cols=46 Identities=30% Similarity=0.618 Sum_probs=33.7
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCC----CCcccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHS----SCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~ 172 (218)
.++..|.||... + .+.....|.-.||..|+++=+..-. .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999864 3 4656667999999999977553322 59999764
No 98
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=84.97 E-value=0.4 Score=29.97 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=32.8
Q ss_pred cCcccCCCCCCCCceeecC-CCCcccChhHHHHHH----hcCCCCcccc
Q 046833 127 ECVICLSEFAPGESLRVLP-KCNHGFHVHCIDKWL----RSHSSCPKCR 170 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp-~C~H~FH~~CI~~Wl----~~~~tCP~CR 170 (218)
.|-+|...+.+++..+... .|..=||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4779999987777777776 699999999976432 2556799885
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.76 E-value=1.9 Score=31.18 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCcCcccCCCC-----CCCCceeecCCCCcccChhHHHHH------H-hcCCCCccccc
Q 046833 125 DTECVICLSEF-----APGESLRVLPKCNHGFHVHCIDKW------L-RSHSSCPKCRH 171 (218)
Q Consensus 125 ~~~CaICL~ef-----~~~~~vr~lp~C~H~FH~~CI~~W------l-~~~~tCP~CR~ 171 (218)
...|.+|+..= ..++++..-..|+..||..|++.+ + ...-.||.|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 46799999763 233456666679999999999632 2 22335777753
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.89 E-value=0.22 Score=38.90 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=35.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH-----hcCCCCcccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL-----RSHSSCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~ 172 (218)
++...| ||.....++..+.....|..-||..|+..-- ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345679 9998876566677777899999999996322 134579999763
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.97 E-value=0.31 Score=38.89 Aligned_cols=44 Identities=30% Similarity=0.619 Sum_probs=31.6
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc----CCCCcccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS----HSSCPKCRHC 172 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~ 172 (218)
+..|.+|... | .+.....|...||..|++.=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999854 3 35556679999999999764432 2259999875
No 102
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.57 E-value=0.4 Score=32.74 Aligned_cols=45 Identities=22% Similarity=0.604 Sum_probs=31.2
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-----CCCCccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-----HSSCPKCRH 171 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 171 (218)
-.|.||...- +++.+.....|...||..|++.=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788998643 34556677779999999999854422 225888864
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.41 E-value=0.34 Score=33.86 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=36.2
Q ss_pred CCcCcccCCCCCC-CCceeecCCCCcccChhHHHHHHhc--------CCCCcccccccc
Q 046833 125 DTECVICLSEFAP-GESLRVLPKCNHGFHVHCIDKWLRS--------HSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~-~~~vr~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~ 174 (218)
+..|.||...-.. ++.+.....|...||..|++.=|.. .-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 5679999976432 3567777789999999999876531 225999976543
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.91 E-value=2 Score=28.72 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=34.4
Q ss_pred CCCCcCcccCCCC-CCCCceeecCCCCcccChhHHHHHHh--cCCCCccccc
Q 046833 123 GSDTECVICLSEF-APGESLRVLPKCNHGFHVHCIDKWLR--SHSSCPKCRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef-~~~~~vr~lp~C~H~FH~~CI~~Wl~--~~~tCP~CR~ 171 (218)
.++..|.||...- .+++.+.....|.-.||..|+..=.. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998753 34556777778999999999875321 1225888854
No 105
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.60 E-value=2.1 Score=32.66 Aligned_cols=47 Identities=26% Similarity=0.493 Sum_probs=34.3
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-----------cCCCCcccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----------SHSSCPKCRHC 172 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----------~~~tCP~CR~~ 172 (218)
...+..|.||-+- -.+.....|-..||..||+.=+. ..-.||+|+..
T Consensus 60 Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3567889999863 34556667999999999997652 12269999753
No 106
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.42 E-value=0.76 Score=33.49 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=30.4
Q ss_pred CcCcccCCCC------CCCCceeecCCCCcccChhHHHHHH------h-cCCCCcccc
Q 046833 126 TECVICLSEF------APGESLRVLPKCNHGFHVHCIDKWL------R-SHSSCPKCR 170 (218)
Q Consensus 126 ~~CaICL~ef------~~~~~vr~lp~C~H~FH~~CI~~Wl------~-~~~tCP~CR 170 (218)
..|.||++.- .+++.+.....|+..||..|++.+. . ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4699999754 1234566666799999999998653 1 233577664
No 107
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.85 E-value=0.3 Score=32.69 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH----hcCCCCcccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL----RSHSSCPKCRHC 172 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl----~~~~tCP~CR~~ 172 (218)
....| ||-....+++.++....|..=||..|+..-- ..+..||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34569 7988876666677777799999999987532 234469999753
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=79.60 E-value=0.5 Score=31.58 Aligned_cols=44 Identities=30% Similarity=0.712 Sum_probs=29.5
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-----CCCCccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-----HSSCPKCRH 171 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 171 (218)
.|.||...- ++..+.....|...||..|++.=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776542 34556677679999999999854422 225888864
No 109
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.15 E-value=1 Score=30.19 Aligned_cols=47 Identities=21% Similarity=0.455 Sum_probs=33.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH---------hcCCCCccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL---------RSHSSCPKCRHCL 173 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl---------~~~~tCP~CR~~l 173 (218)
...| ||...... ..++....|..=||..|+.--. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4568 89887753 4456666799999999985321 2466899997643
No 110
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.87 E-value=2.7 Score=27.56 Aligned_cols=43 Identities=26% Similarity=0.551 Sum_probs=31.9
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+-|-+.+..++.+... -+..||.+| ..|-.|+..|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 356899999999866655433 578999887 5688888887654
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=76.94 E-value=3.1 Score=31.19 Aligned_cols=47 Identities=28% Similarity=0.532 Sum_probs=33.8
Q ss_pred CCCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH------hc-----CCCCcccccc
Q 046833 122 SGSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL------RS-----HSSCPKCRHC 172 (218)
Q Consensus 122 ~~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl------~~-----~~tCP~CR~~ 172 (218)
+..+..|.||-+ |.++.....|-..||..||+.-+ .. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 355678999985 34466666799999999999752 11 2369999664
No 112
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.54 E-value=3 Score=28.54 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=28.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
.+...|.+|-..|..-..-.....||++|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3456899999999765555556679999999996654
No 113
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=76.36 E-value=3.5 Score=24.76 Aligned_cols=29 Identities=7% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIRCVFLR 79 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~rc~~~r 79 (218)
..+++++++...+++++..+.+++|-+.+
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 56667777777777777777778776543
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=76.34 E-value=2.3 Score=30.80 Aligned_cols=48 Identities=21% Similarity=0.510 Sum_probs=32.5
Q ss_pred CCCCcCcccCCCCCCCCceeecC--CCCcccChhHHHHHHhcCC----CCcccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLP--KCNHGFHVHCIDKWLRSHS----SCPKCRHCLIET 176 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp--~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~~~ 176 (218)
.++..|.+|.+ +..+.... .|...||..|+. |.... .||.|+-.+-.+
T Consensus 13 ~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 45678999983 33465654 488999999998 54322 488876555443
No 115
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=76.15 E-value=0.81 Score=30.34 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=32.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh---cCCCCccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR---SHSSCPKCRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~ 171 (218)
.+...| ||-.... ++.++....|..=||..|+..--. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445678 9987765 455666667999999999864321 2346888864
No 116
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.36 E-value=2.1 Score=29.22 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=28.0
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
.+...|.+|-..|..-..-.....||++|+..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3456899999999765544555679999999997653
No 117
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.06 E-value=2.6 Score=29.35 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh------cCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR------SHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~------~~~tCP~CR~~l~ 174 (218)
...|.+|...|..-..-.....||++|+..|...+.. ....|-.|-..|.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4679999999976554455667999999999876542 1223666654443
No 118
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=74.51 E-value=2.5 Score=41.70 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCCcCcccCCCCCCCCceeecCCCC-cccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCN-HGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
+...|+|-++-+.+ ..++| -| +.|-..+|..||..+.+||+=|..|...
T Consensus 890 ~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 35679999999866 66788 66 6899999999999999999999988754
No 119
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.30 E-value=2.3 Score=29.57 Aligned_cols=53 Identities=19% Similarity=0.414 Sum_probs=36.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-------cCCCCccccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-------SHSSCPKCRHCLIE 175 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-------~~~tCP~CR~~l~~ 175 (218)
.+...|.+|-..|..-..-.....||++|+..|....+. ....|-.|-..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 445689999999976554455567999999999766431 12347777555543
No 120
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.29 E-value=2.7 Score=28.73 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=26.4
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCCcccChhHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
.+...|.+|-..|..-..-.....||.+|+..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345689999999976444445556999999998443
No 121
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.77 E-value=3 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.485 Sum_probs=30.9
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+.|-+.+.+++.+... -+..||.+| ..|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 35799999999876544433 578999877 5688888877654
No 122
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=73.34 E-value=0.54 Score=34.92 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=32.9
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHC 172 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (218)
....|..|-..|..-..-.....||.+|+..|..........|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3468999999997644445556799999999977765555667777543
No 123
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=73.28 E-value=2.2 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=36.5
Q ss_pred CCcCcccCCCCCCCCceeecC-CCCcccChhHHHHHH----------hcCCCCccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLP-KCNHGFHVHCIDKWL----------RSHSSCPKCRHCL 173 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp-~C~H~FH~~CI~~Wl----------~~~~tCP~CR~~l 173 (218)
...|.||...+.++...+..- .|..=||..|+.-=- ..+..||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 357999999997766677775 699999999986321 0345799998753
No 124
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.12 E-value=1.5 Score=31.12 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=31.9
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh---cCCCCcccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR---SHSSCPKCRHC 172 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~ 172 (218)
...| ||-.....+ .++....|.--||..|+..=+. ..-.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3568 897766544 4666777999999999875322 12469999753
No 125
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=72.91 E-value=0.68 Score=31.57 Aligned_cols=44 Identities=30% Similarity=0.694 Sum_probs=29.1
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC-----CCCccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH-----SSCPKCRH 171 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~-----~tCP~CR~ 171 (218)
.|.||-..- +.+.+.....|...||..|++.-|... =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665442 334566666799999999998765321 35888875
No 126
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.47 E-value=2 Score=31.81 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=26.3
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
...|.+|-..|..-..-.....||++|+..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999976554455667999999999554
No 127
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.46 E-value=4.4 Score=26.12 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=28.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
...|+.|-+.+..++.+... -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 46799999888764433332 578899877 46888888874
No 128
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.20 E-value=2.9 Score=27.83 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=25.4
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHH
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDK 158 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~ 158 (218)
..|.+|...|..-..-.....||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 589999999976544445556999999999543
No 129
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.42 E-value=3.1 Score=27.70 Aligned_cols=45 Identities=27% Similarity=0.633 Sum_probs=29.6
Q ss_pred CCCCcCcccCCCCCCCCceeecCC--CC-cccChhHHHHHHhc----CCCCcccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPK--CN-HGFHVHCIDKWLRS----HSSCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~ 172 (218)
.+...| ||-... .+ .++.... |. .-||..|+. |.. +-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~-~g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCS-CS-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCC-CC-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345668 898754 24 3555555 55 689999998 432 2359999764
No 130
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.83 E-value=4.5 Score=26.12 Aligned_cols=41 Identities=22% Similarity=0.565 Sum_probs=30.0
Q ss_pred CCcCcccCCCCCC--CCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAP--GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+-|-+.+.. ++.+... -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCC
Confidence 4679999999876 3444332 688999888 468889888753
No 131
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=70.53 E-value=2.2 Score=27.52 Aligned_cols=42 Identities=33% Similarity=0.690 Sum_probs=30.1
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHH-hcCCCCccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKC 169 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~C 169 (218)
..|--|...|.+. ..-..++|++.|+.+| |..+ ..-.+||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 4699999998542 2345778999999999 3333 344579988
No 132
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.15 E-value=3.3 Score=26.69 Aligned_cols=42 Identities=24% Similarity=0.513 Sum_probs=30.3
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+-|-..+..++.+... -+..||.+| .+|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCCC
Confidence 45799999998875444332 678999877 4688888877643
No 133
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.37 E-value=5.8 Score=26.49 Aligned_cols=40 Identities=30% Similarity=0.656 Sum_probs=30.9
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
....|+-|-+.+.+++.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34679999999987776654 468899877 56888888775
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.99 E-value=2.6 Score=33.99 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+..|.+|...|.--..-.....||++|+..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47899999999765555566679999999996543
No 135
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=68.96 E-value=1.4 Score=36.27 Aligned_cols=45 Identities=29% Similarity=0.693 Sum_probs=27.6
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc-----CCCCccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS-----HSSCPKCRH 171 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~ 171 (218)
..|.+|...- +++.+.....|...||..|++.=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3588887642 33456677779999999999954422 225999965
No 136
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.86 E-value=4.3 Score=26.88 Aligned_cols=42 Identities=17% Similarity=0.496 Sum_probs=31.4
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+.|-+.+..++.+... -+..||.+| .+|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 46899999999876664333 578999877 5688888887654
No 137
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.96 E-value=7.7 Score=26.22 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+-|-+.+.. +.+. - -+..||.+| ..|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK--A-RDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE--S-SSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cEEE--E-CCceECccC--------CEecCCCCCCCCC
Confidence 35679999998875 3332 2 678999888 5688888887653
No 138
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.06 E-value=4.9 Score=26.27 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=32.0
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+.|-+.+.+++.+.. -+..||.+| ..|-.|+..|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCC
Confidence 34689999999987776543 578999877 5688898887643
No 139
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=66.95 E-value=2.9 Score=29.38 Aligned_cols=45 Identities=29% Similarity=0.658 Sum_probs=29.3
Q ss_pred CCCCcCcccCCCCCCCCceeecCC--CC-cccChhHHHHHHhc----CCCCcccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPK--CN-HGFHVHCIDKWLRS----HSSCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~~ 172 (218)
.+...| ||-... .++ ++.... |. .-||..|+. |.. +-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~-~g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBC-CSC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCC-CCC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 345568 998754 243 445555 55 689999998 432 3369999764
No 140
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=66.87 E-value=4.6 Score=25.75 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=32.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+-|-..+..++.+... -+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 46899999999877765433 5788998884 688888887655
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.40 E-value=3.1 Score=33.87 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~W 159 (218)
+..|.+|...|.--..-.....||++|+..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999999765545566679999999996654
No 142
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=65.35 E-value=2.6 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=12.3
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhH
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHC 155 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~C 155 (218)
.|+.|-+.+..++.+.. -+..||.+|
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C 27 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC 27 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC
Confidence 35555555544343322 245555544
No 143
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.94 E-value=6.6 Score=25.67 Aligned_cols=41 Identities=24% Similarity=0.643 Sum_probs=29.6
Q ss_pred CCcCcccCCCCCC--CCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAP--GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~--~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+.|-..+.+ ++.+... -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCCC
Confidence 4579999999875 3334332 678999988 568888887763
No 144
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.80 E-value=6.4 Score=26.30 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=32.3
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETC 177 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (218)
....|+.|-..+.+.+.+.. -+..||.+| ..|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 34679999999877666543 578999988 56788888876553
No 145
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=60.73 E-value=5.6 Score=28.80 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=13.9
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHH
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCI 156 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI 156 (218)
.|+.|-..+...+.+... -+..||..|+
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF 37 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLECF 37 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTTC
T ss_pred cccCCCCeecCCceEEEE--CCcccccccC
Confidence 466666665543333221 3555665553
No 146
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=60.21 E-value=26 Score=24.07 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=29.2
Q ss_pred CCCCcCcccCCCCCCCCceeecC-CCCcccChhHHHHHHhc
Q 046833 123 GSDTECVICLSEFAPGESLRVLP-KCNHGFHVHCIDKWLRS 162 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp-~C~H~FH~~CI~~Wl~~ 162 (218)
.....|.+|.+.+++.. ..+.| .-+|.|+-.|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 34567999999997744 44444 24799999999999864
No 147
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.14 E-value=3.6 Score=27.71 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCCCcCcccCCCCCCCCceeecC--CCCcccChhHHHHHHh---------cCCCCccccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLP--KCNHGFHVHCIDKWLR---------SHSSCPKCRHCL 173 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp--~C~H~FH~~CI~~Wl~---------~~~tCP~CR~~l 173 (218)
.....| ||-.....+ .++... .|..=||..|+.---. .+..||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345678 898875444 455655 6999999999864221 245699997643
No 148
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=59.58 E-value=1.9 Score=37.96 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWL 160 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl 160 (218)
...|.+|-..|..-..-.....||++||..|-..++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 467999999997544334455699999999998765
No 149
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.28 E-value=6 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.454 Sum_probs=25.7
Q ss_pred CCCCcCcccCCCCC-CCCceeecCCCCcccChhHHH
Q 046833 123 GSDTECVICLSEFA-PGESLRVLPKCNHGFHVHCID 157 (218)
Q Consensus 123 ~~~~~CaICL~ef~-~~~~vr~lp~C~H~FH~~CI~ 157 (218)
.+...|++|...|. .+..-++...|+|.++..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 44678999999994 333345666799999988844
No 150
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.17 E-value=19 Score=25.15 Aligned_cols=51 Identities=18% Similarity=0.438 Sum_probs=35.8
Q ss_pred CCCcCcccCCCCC---CCCceeecCCCCcccChhHHHHHH-hcCCCCcccccccc
Q 046833 124 SDTECVICLSEFA---PGESLRVLPKCNHGFHVHCIDKWL-RSHSSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~---~~~~vr~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~ 174 (218)
....|.||-+++. +++.-.-...|+--.++.|.+-=. ..++.||-|+..+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3468999999873 333333333477778899988665 45678999988775
No 151
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=56.71 E-value=2.2 Score=30.78 Aligned_cols=27 Identities=37% Similarity=0.664 Sum_probs=17.7
Q ss_pred CCCcccChhHHHHHHhcCCCCccccccccccc
Q 046833 146 KCNHGFHVHCIDKWLRSHSSCPKCRHCLIETC 177 (218)
Q Consensus 146 ~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~ 177 (218)
+||+.|. .=+.....||.|+..-++.+
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 4888881 11234567999998766654
No 152
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.60 E-value=2.1 Score=30.74 Aligned_cols=45 Identities=27% Similarity=0.714 Sum_probs=30.2
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhc----CCCCcccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRS----HSSCPKCRHC 172 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~----~~tCP~CR~~ 172 (218)
.|.||-..-. ++.+.....|...||..|++.=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 4667765533 3456666679999999999864432 2258888654
No 153
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=55.57 E-value=2.5 Score=27.09 Aligned_cols=43 Identities=30% Similarity=0.690 Sum_probs=28.4
Q ss_pred CCCcCcccCCCCCCCCceeecCC--CC-cccChhHHHHHHhc----CCCCccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPK--CN-HGFHVHCIDKWLRS----HSSCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 171 (218)
+..-| ||-... .+ .++.... |. .-||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567 897753 33 4556666 65 699999998 432 235998864
No 154
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=53.93 E-value=11 Score=24.37 Aligned_cols=41 Identities=24% Similarity=0.525 Sum_probs=29.5
Q ss_pred CCcCcccCCCCCC---CCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAP---GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~---~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+-|-..+.. ++.+... -+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCC
Confidence 3679999999885 3333332 578999887 568889888764
No 155
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=53.35 E-value=2.7 Score=26.01 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=28.0
Q ss_pred ccCCCCCCCCceeecCCCCcccChhHHHHHH---hcCCCCcccccc
Q 046833 130 ICLSEFAPGESLRVLPKCNHGFHVHCIDKWL---RSHSSCPKCRHC 172 (218)
Q Consensus 130 ICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl---~~~~tCP~CR~~ 172 (218)
||-.... +...+....|+.=||..|+.--- ..+..||.|+.+
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCCc
Confidence 6766554 44566666799999999986432 134468888753
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.93 E-value=1.2 Score=32.37 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=31.5
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcC----CCCcccccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSH----SSCPKCRHCLI 174 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~l~ 174 (218)
.|.||...-. +..+.....|...||..|++.=|... -.||.|+..+.
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 5778876533 34566666799999999998644322 24888866443
No 157
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=52.82 E-value=2.7 Score=26.92 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=27.6
Q ss_pred CCCcCcccCCCCCCCCceeecCC--CC-cccChhHHHHHHhc----CCCCccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPK--CN-HGFHVHCIDKWLRS----HSSCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 171 (218)
+..-| ||.... .+ .++.... |. .-||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 897753 23 4555555 44 689999998 432 235998864
No 158
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=52.73 E-value=4.7 Score=26.74 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=29.4
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+.|-+.+.+++.+.. -+..||.+| ..|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCC
Confidence 4679999999877775433 578899877 4477887777544
No 159
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.67 E-value=12 Score=25.30 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=29.3
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
....|+.|-+.+. ++.+. . -+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 3568999999884 34333 2 689999887 568888888764
No 160
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.66 E-value=20 Score=24.29 Aligned_cols=21 Identities=10% Similarity=0.244 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046833 55 FFSILISAVVCSLGFHFLIRC 75 (218)
Q Consensus 55 il~ill~~li~~l~l~~i~rc 75 (218)
+++++..++++.+++++++++
T Consensus 14 v~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 161
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=51.76 E-value=2.8 Score=28.01 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=33.4
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-----cCCCCcccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----SHSSCPKCRHC 172 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~ 172 (218)
...| ||-..+..+..++....|.-=||..|+.---. ....||.|+..
T Consensus 10 ~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3456 88877765556677777999999999964321 24569999764
No 162
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=51.46 E-value=12 Score=28.89 Aligned_cols=34 Identities=29% Similarity=0.711 Sum_probs=27.3
Q ss_pred CCCCcCcccCCCCCCCCceeecC--CCCcccChhHHHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLP--KCNHGFHVHCIDKWL 160 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp--~C~H~FH~~CI~~Wl 160 (218)
+.+..|.||-+ |..+.... .|...|+..||+.++
T Consensus 77 G~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 77 GYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp SSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHT
T ss_pred CCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhc
Confidence 45678999985 45666665 599999999999997
No 163
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.69 E-value=11 Score=25.60 Aligned_cols=41 Identities=29% Similarity=0.558 Sum_probs=29.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+-|-+.+.+.+.++ . -+..||.+| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 467999999988766543 2 678999888 4577777776654
No 164
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.51 E-value=14 Score=23.50 Aligned_cols=41 Identities=20% Similarity=0.528 Sum_probs=28.9
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+.|-+.+.+ +.+.. -+..||.+| .+|-.|+..|...
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVIKA---MNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-CCEEE---TTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-eEEEE---CcccccccC--------CEeCCCCCcCCCC
Confidence 34679999988863 43332 578899887 4688888877654
No 165
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.47 E-value=11 Score=24.83 Aligned_cols=41 Identities=20% Similarity=0.482 Sum_probs=28.8
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+.|-..+..++.+... -+..||..| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccCC
Confidence 35799999998744443222 578999877 557888887764
No 166
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=50.42 E-value=15 Score=25.14 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=5.4
Q ss_pred CcCcccCCCCC
Q 046833 126 TECVICLSEFA 136 (218)
Q Consensus 126 ~~CaICL~ef~ 136 (218)
..|+.|-+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (101)
T 2cup_A 6 SGCVECRKPIG 16 (101)
T ss_dssp CBCSSSCCBCC
T ss_pred CcCcccCCccc
Confidence 34555555543
No 167
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=49.64 E-value=4.6 Score=22.20 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=19.8
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHH
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCI 156 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI 156 (218)
..|+.|-..+-..+++.. -|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 468899887766554432 5789998883
No 168
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.24 E-value=15 Score=24.12 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+-|-+.+.. +.+ .- -+..||.+| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--KL-RDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--EC-SSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCccccCCCCccC-cEE--EE-CcceeCcCc--------CeeCCCCCCCCC
Confidence 4689999998875 323 22 678999888 468888888753
No 169
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.21 E-value=17 Score=23.94 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=29.4
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
....|+-|-+.+. ++.+.. -+..||.+| .+|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLIF---KNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCCC---SSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEEEE---CcceeCCCC--------CEeCCCCCccCCC
Confidence 3467999999887 343322 578899877 5688898887754
No 170
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=48.86 E-value=2.1 Score=28.07 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=28.8
Q ss_pred CCcCcccCCCCCCCCceeecC--CCCcccChhHHHHHH---h-----cCCCCccccc
Q 046833 125 DTECVICLSEFAPGESLRVLP--KCNHGFHVHCIDKWL---R-----SHSSCPKCRH 171 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp--~C~H~FH~~CI~~Wl---~-----~~~tCP~CR~ 171 (218)
...| ||-.....+. ++... +|+.=||..|+.--- . .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3558 7977655554 44553 499999999974211 0 1356999975
No 171
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.18 E-value=20 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=25.2
Q ss_pred CCCCcCcccCCCCCCCCceeecCCC-CcccChhHHHHH
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKC-NHGFHVHCIDKW 159 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C-~H~FH~~CI~~W 159 (218)
++..-|.||.++ ..+|-+. | +-+|+..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 455679999987 4588886 8 899999997764
No 172
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.64 E-value=15 Score=32.47 Aligned_cols=46 Identities=28% Similarity=0.622 Sum_probs=34.1
Q ss_pred CCCCcCcccCCCCCCCCceeecC--CCCcccChhHHHHHHh----------cCCCCcccccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLP--KCNHGFHVHCIDKWLR----------SHSSCPKCRHC 172 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp--~C~H~FH~~CI~~Wl~----------~~~tCP~CR~~ 172 (218)
+.+..|.+|-+. .++.... .|...|+..||+.++- ..=.|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 456789999863 4566666 7999999999999982 22368888654
No 173
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=46.51 E-value=9.8 Score=29.16 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=29.8
Q ss_pred CCCcCcccCCCCCCC-CceeecCCCCcccChhHHHHHHhcCC--CCccccc
Q 046833 124 SDTECVICLSEFAPG-ESLRVLPKCNHGFHVHCIDKWLRSHS--SCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~ef~~~-~~vr~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~ 171 (218)
.+..|++|...|.-- ..-++...|+|.++..|= .|..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 467899999987422 223455569999999986 2432222 2666644
No 174
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=45.67 E-value=4.5 Score=26.11 Aligned_cols=43 Identities=33% Similarity=0.670 Sum_probs=28.1
Q ss_pred CCCcCcccCCCCCCCCceeecCC--CC-cccChhHHHHHHhc----CCCCccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPK--CN-HGFHVHCIDKWLRS----HSSCPKCRH 171 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~--C~-H~FH~~CI~~Wl~~----~~tCP~CR~ 171 (218)
+..-| ||-... .+ .++.... |. .-||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34567 897753 34 4556656 44 899999998 322 336999865
No 175
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=44.71 E-value=11 Score=28.82 Aligned_cols=39 Identities=28% Similarity=0.733 Sum_probs=26.9
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
..|+.|-..+..++.+... -++.||.+|+ .|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 5688888777665544332 5788888884 6778877775
No 176
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=44.16 E-value=70 Score=21.42 Aligned_cols=21 Identities=29% Similarity=0.418 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 046833 64 VCSLGFHFLIRCVFLRCSRLL 84 (218)
Q Consensus 64 i~~l~l~~i~rc~~~r~~~~~ 84 (218)
+.+++..++.-|+++|.++..
T Consensus 24 vaalg~li~gcwcylrlqri~ 44 (90)
T 1zza_A 24 IAALGALILGCWCYLRLQRIS 44 (90)
T ss_dssp HHHHHHHHHHHHTTTSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334443333333336665543
No 177
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=44.14 E-value=4.5 Score=22.07 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=10.0
Q ss_pred CCCCcccccccccc
Q 046833 163 HSSCPKCRHCLIET 176 (218)
Q Consensus 163 ~~tCP~CR~~l~~~ 176 (218)
+..||+|+..++..
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 34699998876654
No 178
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.35 E-value=4.8 Score=36.68 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=35.5
Q ss_pred CCCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHh-----cCCCCcccccccc
Q 046833 124 SDTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----SHSSCPKCRHCLI 174 (218)
Q Consensus 124 ~~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l~ 174 (218)
+...| ||-..+..+..++.+..|.-=||..|+.---. .+..||.|+...-
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 34557 99887765566777778999999999964321 2357999986543
No 179
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.35 E-value=27 Score=21.98 Aligned_cols=38 Identities=21% Similarity=0.571 Sum_probs=27.8
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
...|+-|-+.+.. +.+.. -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 4679999998864 44433 578899877 46888888876
No 180
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=41.93 E-value=39 Score=20.05 Aligned_cols=23 Identities=9% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046833 54 MFFSILISAVVCSLGFHFLIRCV 76 (218)
Q Consensus 54 iil~ill~~li~~l~l~~i~rc~ 76 (218)
++++++..++++-+++.++++..
T Consensus 12 Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 12 VLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554455555555556655
No 181
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=41.70 E-value=14 Score=26.89 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=30.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+-|-..+.+...+.. -+..||..| ..|-.|+..|.+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 100 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLGD 100 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCcccc
Confidence 4679999998875433433 578999888 668899988863
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.52 E-value=19 Score=22.78 Aligned_cols=39 Identities=23% Similarity=0.541 Sum_probs=27.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+.|-+.+.. +.+ .. -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCCc
Confidence 4579999988864 333 22 578999877 468888887753
No 183
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=41.24 E-value=11 Score=26.88 Aligned_cols=12 Identities=42% Similarity=1.276 Sum_probs=10.9
Q ss_pred ccChhHHHHHHh
Q 046833 150 GFHVHCIDKWLR 161 (218)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (218)
.||..|+..|++
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999999985
No 184
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=40.87 E-value=11 Score=26.79 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=10.9
Q ss_pred ccChhHHHHHHh
Q 046833 150 GFHVHCIDKWLR 161 (218)
Q Consensus 150 ~FH~~CI~~Wl~ 161 (218)
.||..|+..|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999999985
No 185
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.99 E-value=23 Score=23.19 Aligned_cols=39 Identities=26% Similarity=0.542 Sum_probs=28.4
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
..|+.|-..+. ++.+.. -+..||.+| ..|-.|+..|...
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCCCC
Confidence 57999999887 343332 578999877 5688888887644
No 186
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=39.52 E-value=15 Score=28.35 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
-..|..|-..+.... . . +=|..|+..|... +....|..|...+.+
T Consensus 87 CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~--~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 87 CLKCSDCHVPLAERC-F--S-RGESVYCKDDFFK--RFGTKCAACQLGIPP 131 (182)
T ss_dssp TTSCTTTCCCCSSCC-E--E-ETTEEECHHHHHH--TTSCCCTTTCCCCCS
T ss_pred cCccCCCCCccCCCc-e--e-ECCEeeecCcccc--ccccccccCCCccCC
Confidence 456667766665432 1 1 1456666655443 234456666666654
No 187
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.17 E-value=17 Score=23.74 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=27.6
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+.|-+.+. ++.+. . -+..||.+| ..|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~~~--a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPFMV--A-GEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCC-SCCBC--C-TTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcC-ceEEE--E-CCceecccc--------CCccCCCCccCC
Confidence 357999998887 33332 2 578899877 568889888864
No 188
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=38.94 E-value=15 Score=28.48 Aligned_cols=37 Identities=24% Similarity=0.651 Sum_probs=25.7
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccc
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCL 173 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l 173 (218)
.|+.|-..+...+.+... -++.||..|+ +|-.|...|
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF--------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF--------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC--------BCTTTCCBC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC--------eECCCCCCC
Confidence 699999888765544333 6899999884 455555555
No 189
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=38.78 E-value=7 Score=25.90 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHHHHhcCCCCcccccccccc
Q 046833 156 IDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 156 I~~Wl~~~~tCP~CR~~l~~~ 176 (218)
++.||..--.||+|+..|.-.
T Consensus 1 md~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp --CCGGGTCCCTTTCCCCEEC
T ss_pred CChHHHhheeCCCCCCcCeEe
Confidence 356777778899999988744
No 190
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.29 E-value=33 Score=22.03 Aligned_cols=38 Identities=18% Similarity=0.496 Sum_probs=27.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
...|+-|-..+.. +.+ . --+..||.+| .+|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-~~v--~-a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--E-AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--C-CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC-eeE--E-eCCCCCCCCc--------CEeCCCCCCCC
Confidence 3579999888865 322 2 2678899877 56888888776
No 191
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.46 E-value=14 Score=23.12 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=28.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+.|-+.+. ++.+ .. -+..||.+| ..|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 457999999887 4432 32 678999877 568888887764
No 192
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.98 E-value=16 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=12.0
Q ss_pred cCcccCCCCCCCCceeecCCCCcccChhH
Q 046833 127 ECVICLSEFAPGESLRVLPKCNHGFHVHC 155 (218)
Q Consensus 127 ~CaICL~ef~~~~~vr~lp~C~H~FH~~C 155 (218)
.|+.|-..+...+.+... -++.||..|
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C 94 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLEC 94 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGG
T ss_pred ChhhcCCccCccceeEee--CCceECccC
Confidence 455555554433322221 345555544
No 193
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.68 E-value=16 Score=22.93 Aligned_cols=40 Identities=28% Similarity=0.620 Sum_probs=28.5
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccC--hhHHHHHHhcCCCCccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFH--VHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH--~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
..|+-|-+.+..++..... -+..|| .+| .+|-.|+..|..
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCCC
Confidence 4699999988764333332 578999 888 568888888753
No 194
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=36.58 E-value=60 Score=18.97 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFLIR 74 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i~r 74 (218)
.+++|+++...++..++.+.+.+|
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444444444443
No 195
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=35.99 E-value=12 Score=26.06 Aligned_cols=44 Identities=23% Similarity=0.532 Sum_probs=28.5
Q ss_pred CCCCcCcccCCCCCCCCceeecCCCC---cccChhHHHHHHh----cCCCCcc-ccc
Q 046833 123 GSDTECVICLSEFAPGESLRVLPKCN---HGFHVHCIDKWLR----SHSSCPK-CRH 171 (218)
Q Consensus 123 ~~~~~CaICL~ef~~~~~vr~lp~C~---H~FH~~CI~~Wl~----~~~tCP~-CR~ 171 (218)
.+...| ||-... .++ ++....|+ .-||..|+. |. .+-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345568 898753 243 55555555 789999997 32 2346999 973
No 196
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.79 E-value=28 Score=22.56 Aligned_cols=38 Identities=18% Similarity=0.505 Sum_probs=27.6
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLI 174 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~ 174 (218)
...|+.|-+.+.+ +.+ .. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GGV--TY-RDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS-CCE--ES-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecC-cEE--EE-CCchhhhhh--------CCcccCCCcCC
Confidence 3579999988865 333 22 678999877 46888888875
No 197
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.73 E-value=7.1 Score=25.01 Aligned_cols=36 Identities=19% Similarity=0.515 Sum_probs=23.6
Q ss_pred CCcCcccCCCCCCCCceeecC--C--CCcccChhHHHHHH
Q 046833 125 DTECVICLSEFAPGESLRVLP--K--CNHGFHVHCIDKWL 160 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp--~--C~H~FH~~CI~~Wl 160 (218)
-..|+-|...++..+....+. . |++.|+..|...|-
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 357898988887765433322 2 66777777777764
No 198
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.11 E-value=30 Score=22.54 Aligned_cols=39 Identities=23% Similarity=0.518 Sum_probs=28.1
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+-|-..+.+ ..+.. -+..||..| .+|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTT--------CBCSSSCCBCTT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHh--------cCcccCCCccCC
Confidence 4679999988873 33322 578999877 568889888763
No 199
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=32.21 E-value=8.7 Score=25.89 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=15.8
Q ss_pred ceeecC-----CCCcccChhHHHHH
Q 046833 140 SLRVLP-----KCNHGFHVHCIDKW 159 (218)
Q Consensus 140 ~vr~lp-----~C~H~FH~~CI~~W 159 (218)
.....+ +|+|.|+..|-..|
T Consensus 44 ~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 44 RKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp TSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred CcCCCCCCCCCCCCCeeccccCccc
Confidence 344565 69999999998888
No 200
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.18 E-value=7.2 Score=25.72 Aligned_cols=20 Identities=30% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHhcCCCCcccccccccc
Q 046833 157 DKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 157 ~~Wl~~~~tCP~CR~~l~~~ 176 (218)
+.||..--.||+|+..|.-.
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 56777778899999988754
No 201
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=32.03 E-value=48 Score=21.77 Aligned_cols=7 Identities=14% Similarity=-0.226 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 046833 70 HFLIRCV 76 (218)
Q Consensus 70 ~~i~rc~ 76 (218)
.+.+.|.
T Consensus 25 glcI~cc 31 (70)
T 2klu_A 25 GLGIFFS 31 (70)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3444444
No 202
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.63 E-value=33 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=14.3
Q ss_pred CcCcccCCCCCC-CCceeecCCCCcccChhHHHHH
Q 046833 126 TECVICLSEFAP-GESLRVLPKCNHGFHVHCIDKW 159 (218)
Q Consensus 126 ~~CaICL~ef~~-~~~vr~lp~C~H~FH~~CI~~W 159 (218)
..|+.|-..+.+ +..... +=+..|+..|...-
T Consensus 31 F~C~~C~~~L~~~g~~~~~--~~g~~yC~~~y~~~ 63 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYY--KLGRKLCRRDYLRL 63 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCC--BTTBCCCHHHHHHH
T ss_pred CcccccCCchhcCCCeeEE--ECCeeechHHHHHH
Confidence 455566555542 111111 13555555555443
No 203
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=31.45 E-value=86 Score=20.74 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046833 52 VVMFFSILISAVVCSLGFHFL 72 (218)
Q Consensus 52 viiil~ill~~li~~l~l~~i 72 (218)
.+=+-+++++++++++++.++
T Consensus 15 tLRiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 204
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=30.25 E-value=49 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=27.6
Q ss_pred CcCcccCCCCCCCCceeecCCCCcc--cChhHHHHHHhc--CCCCcccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHG--FHVHCIDKWLRS--HSSCPKCRHCLI 174 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~--FH~~CI~~Wl~~--~~tCP~CR~~l~ 174 (218)
..|++=...+ ...+|-.. |.|. |-..=+.....+ .-.||+|...+.
T Consensus 250 L~CPlS~~ri--~~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRM--KYPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBC--SSEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccc--cccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4688766665 33566665 9997 443333332222 236999988764
No 205
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=30.23 E-value=26 Score=27.10 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=28.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
...|+.|-..+.+++.+.. -+..||.+| ..|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCCC
Confidence 4569999998877666643 578899877 457777777653
No 206
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=30.21 E-value=8.4 Score=26.28 Aligned_cols=24 Identities=29% Similarity=0.765 Sum_probs=17.6
Q ss_pred eeecCCCCcccChhHHHHHHhcCC
Q 046833 141 LRVLPKCNHGFHVHCIDKWLRSHS 164 (218)
Q Consensus 141 vr~lp~C~H~FH~~CI~~Wl~~~~ 164 (218)
.+..|.|++.|+..|-..|=..|.
T Consensus 43 ~v~C~~C~~~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQWEEQHR 66 (86)
T ss_dssp CEECTTTCCEECSSSCSBCCTTTT
T ss_pred ceEeCCCCCccccccCCchhhcCC
Confidence 356777999999999888744443
No 207
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.07 E-value=26 Score=27.03 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=15.4
Q ss_pred eeecCCCCcccChhHHHHHHhcCCCCccccc
Q 046833 141 LRVLPKCNHGFHVHCIDKWLRSHSSCPKCRH 171 (218)
Q Consensus 141 vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~ 171 (218)
.-+++.|||++-. .....||+|..
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCC
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 3345568888752 23347999965
No 208
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=28.06 E-value=38 Score=24.05 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=5.4
Q ss_pred cCcccCCCCCC
Q 046833 127 ECVICLSEFAP 137 (218)
Q Consensus 127 ~CaICL~ef~~ 137 (218)
.|+.|-..+..
T Consensus 65 ~C~~C~~~I~~ 75 (126)
T 2xqn_T 65 VCQGCHNAIDP 75 (126)
T ss_dssp BCTTTCSBCCT
T ss_pred cCcccCCcCCc
Confidence 45555555444
No 209
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.94 E-value=39 Score=21.79 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCcccccccccc
Q 046833 125 DTECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~ 176 (218)
...|+.|-..+.+ +.+.. -+..||.+| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCCC
Confidence 3579999988875 33432 578899877 5688888887653
No 210
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=27.89 E-value=57 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=29.2
Q ss_pred CcCcccCCCCCCCCceeecCCCCcc--cChhHHHHHHhcC--CCCccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHG--FHVHCIDKWLRSH--SSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~--FH~~CI~~Wl~~~--~tCP~CR~~l~~ 175 (218)
..|+|=...+ ...+|-.. |.|. |-..=+.....+. -.||+|...+..
T Consensus 216 L~CPlS~~ri--~~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRL--TIPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBC--SSEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCcccee--ccCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 4688776665 33567665 9998 5544333333333 369999987753
No 211
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.62 E-value=16 Score=20.71 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=8.9
Q ss_pred CCccccccccccc
Q 046833 165 SCPKCRHCLIETC 177 (218)
Q Consensus 165 tCP~CR~~l~~~~ 177 (218)
.||.|+..+....
T Consensus 7 iCP~C~~~l~s~~ 19 (34)
T 3mjh_B 7 ICPQCMKSLGSAD 19 (34)
T ss_dssp ECTTTCCEESSHH
T ss_pred CCcHHHHHcCCHH
Confidence 5888877766543
No 212
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=26.25 E-value=21 Score=22.42 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=8.6
Q ss_pred CcCcccCCCCCC
Q 046833 126 TECVICLSEFAP 137 (218)
Q Consensus 126 ~~CaICL~ef~~ 137 (218)
-.|++|...+..
T Consensus 11 L~CP~c~~~L~~ 22 (56)
T 2kpi_A 11 LACPACHAPLEE 22 (56)
T ss_dssp CCCSSSCSCEEE
T ss_pred eeCCCCCCccee
Confidence 478888887543
No 213
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=24.47 E-value=1e+02 Score=17.47 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Q 046833 48 LHFNVVMFFSILISAVVCSLGFHFLI 73 (218)
Q Consensus 48 ~~f~viiil~ill~~li~~l~l~~i~ 73 (218)
.+..+.+-+++.++.+++.++-.+++
T Consensus 4 thl~malt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 4 THLTMALTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCceeEE
Confidence 34555555555555555555554443
No 214
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.36 E-value=7.2 Score=25.77 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=14.0
Q ss_pred HHHhcCCCCcccccccccc
Q 046833 158 KWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 158 ~Wl~~~~tCP~CR~~l~~~ 176 (218)
.||..--.||+|+..|.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 4555666799999987754
No 215
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.91 E-value=21 Score=27.98 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=12.7
Q ss_pred CCCCcccChhHHHHHHhcCCCCcccccc
Q 046833 145 PKCNHGFHVHCIDKWLRSHSSCPKCRHC 172 (218)
Q Consensus 145 p~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (218)
+.|||++-.+ .....||+|..+
T Consensus 159 ~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 159 RNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCCEeeCC------CCCCCCCCCcCC
Confidence 3477775421 123379999764
No 216
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=23.43 E-value=15 Score=33.05 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=33.0
Q ss_pred ccCCCCCCCCceeecCCCCcccChhHHHHHHh-----cCCCCccccccccc
Q 046833 130 ICLSEFAPGESLRVLPKCNHGFHVHCIDKWLR-----SHSSCPKCRHCLIE 175 (218)
Q Consensus 130 ICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l~~ 175 (218)
||-..+.++...+.+..|.-=||..|+.---. .+..||.|+....+
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 88887765566777778999999999953211 34579999775443
No 217
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=23.26 E-value=35 Score=18.88 Aligned_cols=18 Identities=44% Similarity=0.785 Sum_probs=14.1
Q ss_pred CCcCcccCCCCCCCCcee
Q 046833 125 DTECVICLSEFAPGESLR 142 (218)
Q Consensus 125 ~~~CaICL~ef~~~~~vr 142 (218)
-.+|+.|.+--++|+..|
T Consensus 9 fhecalcysitdpgerqr 26 (36)
T 2jyp_A 9 FHECALCYSITDPGERQR 26 (36)
T ss_dssp TTCCSSSTTTTTTTCTTC
T ss_pred cchheeEEeecCcchhhh
Confidence 468999999888877544
No 218
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.24 E-value=39 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.463 Sum_probs=15.7
Q ss_pred eeecCCCCcccChhHHHHHHhcCCCCcccccc
Q 046833 141 LRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHC 172 (218)
Q Consensus 141 vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~ 172 (218)
.-+++.|||++-. .....||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3445569988542 223589999763
No 219
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=23.00 E-value=1.6e+02 Score=21.81 Aligned_cols=10 Identities=20% Similarity=-0.074 Sum_probs=4.4
Q ss_pred CchhHHHHHh
Q 046833 6 FSSTQLSHDF 15 (218)
Q Consensus 6 ~~~~~~~~~~ 15 (218)
++-++|+|++
T Consensus 20 ~~L~~l~~e~ 29 (138)
T 2k21_A 20 PFLTKLWQET 29 (138)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 220
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.37 E-value=7.2 Score=25.77 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=13.5
Q ss_pred HHHhcCCCCcccccccccc
Q 046833 158 KWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 158 ~Wl~~~~tCP~CR~~l~~~ 176 (218)
.||..--.||+|+..|.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 3 AKFLEILVCPLCKGPLVFD 21 (68)
T ss_dssp CCCEEECBCTTTCCBCEEE
T ss_pred hHHhhheECCCCCCcCeEe
Confidence 3455556799999987654
No 221
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.17 E-value=87 Score=22.12 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=33.5
Q ss_pred CcCcccCCCCCC-CCceeecCCCCcccChhHHHHHHhcCCCCcccccccccccc
Q 046833 126 TECVICLSEFAP-GESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIETCE 178 (218)
Q Consensus 126 ~~CaICL~ef~~-~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~~ 178 (218)
..|..|-..+.+ +..... +=+..|+..|...-+..+..|-.|...|....-
T Consensus 33 F~C~~C~~~L~~~~~~~~~--~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYT--KSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEE--ETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEE--ECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 468888777753 222222 257788888887765554589999888886543
No 222
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.74 E-value=1.3e+02 Score=19.95 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046833 51 NVVMFFSILISAVVCSLGFHFL 72 (218)
Q Consensus 51 ~viiil~ill~~li~~l~l~~i 72 (218)
-.+-+-++++.++++++++.++
T Consensus 17 ~tLRigGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheeccchhHHHHHHHHHHHH
Confidence 4444566666666666665555
No 223
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.72 E-value=7.9 Score=25.72 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHhcCCCCcccccccccc
Q 046833 158 KWLRSHSSCPKCRHCLIET 176 (218)
Q Consensus 158 ~Wl~~~~tCP~CR~~l~~~ 176 (218)
.||..--.||+|+..|.-.
T Consensus 3 ~~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEE
T ss_pred hHHhhheECCCCCCcCEEe
Confidence 3455556799999987654
No 224
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.29 E-value=25 Score=24.92 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=24.3
Q ss_pred CcCcccCCCCCCCCceeecCCCCcccChhHHHHHHhcCCCCccccccccc
Q 046833 126 TECVICLSEFAPGESLRVLPKCNHGFHVHCIDKWLRSHSSCPKCRHCLIE 175 (218)
Q Consensus 126 ~~CaICL~ef~~~~~vr~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~ 175 (218)
..|++|-.+++... ++.++..|-.. ++....||-|...|..
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHHH
Confidence 57999988864322 22223334221 3455679999887754
Done!