BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046837
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 112 LFKTLSSYSWDAKMVLSLAAFAVNYGE--FWLVAQLCTQNSLANSVAVLKQLPEIPTGYD 169
++ T +++ K +L F + E FW+V ++C + L+ V +LK+ +I
Sbjct: 785 IYHTFGRHNF-KKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIA---- 839
Query: 170 ALKPQFDELNNLIGAMLDLTNCIVE-----FKQLPSRYISNDGKAMS-MDQDHYHAAY 221
A ++ LN+ ++ L+N V +++LPS++ + S MD H AY
Sbjct: 840 AHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAY 897
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 112 LFKTLSSYSWDAKMVLSLAAFAVNYGE--FWLVAQLCTQNSLANSVAVLKQLPEIPTGYD 169
++ T +++ K +L F + E FW+V ++C + L+ V +LK+ +I
Sbjct: 785 IYHTFGRHNF-KKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIA---- 839
Query: 170 ALKPQFDELNNLIGAMLDLTNCIVE-----FKQLPSRYISNDGKAMS-MDQDHYHAAY 221
A ++ LN+ ++ L+N V +++LPS++ + S MD H AY
Sbjct: 840 AHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAY 897
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 139 FWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAM-------LDLTNC 191
W + +L VAV+ ++ EI + L F+ + ++ AM LD T
Sbjct: 636 LWFEKCIVETENLEERVAVVSRIIEILQVFQELN-NFNGVLEVVSAMNSSPVYRLDHT-- 692
Query: 192 IVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLY 241
F+Q+PSR +A + +DHY RSI N + F G+Y
Sbjct: 693 ---FEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI---NPPCVPFFGIY 736
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 139 FWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAM-------LDLTNC 191
W + +L VAV+ ++ EI + L F+ + ++ AM LD T
Sbjct: 636 LWFEKCIVETENLEERVAVVSRIIEILQVFQELN-NFNGVLEVVSAMNSSPVYRLDHT-- 692
Query: 192 IVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLY 241
F+Q+PSR +A + +DHY RSI N + F G+Y
Sbjct: 693 ---FEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI---NPPCVPFFGIY 736
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 139 FWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAM-------LDLTNC 191
W + +L VAV+ ++ EI + L F+ + ++ AM LD T
Sbjct: 833 LWFEKCIVETENLEERVAVVSRIIEILQVFQELN-NFNGVLEVVSAMNSSPVYRLDHT-- 889
Query: 192 IVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLY 241
F+Q+PSR +A + +DHY RSI N + F G+Y
Sbjct: 890 ---FEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI---NPPCVPFFGIY 933
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 139 FWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAM-------LDLTNC 191
W + +L VAV+ ++ EI + L F+ + ++ AM LD T
Sbjct: 266 LWFEKCIVETENLEERVAVVSRIIEILQVFQELN-NFNGVLEVVSAMNSSPVYRLDHT-- 322
Query: 192 IVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLY 241
F+Q+PSR +A + +DHY RSI N + F G+Y
Sbjct: 323 ---FEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI---NPPCVPFFGIY 366
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 139 FWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAM-------LDLTNC 191
W + +L VAV+ ++ EI + L F+ + ++ AM LD T
Sbjct: 274 LWFEKCIVETENLEERVAVVSRIIEILQVFQELN-NFNGVLEVVSAMNSSPVYRLDHT-- 330
Query: 192 IVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLY 241
F+Q+PSR +A + +DHY RSI N + F G+Y
Sbjct: 331 ---FEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI---NPPCVPFFGIY 374
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 139 FWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAM-------LDLTNC 191
W + +L VAV+ ++ EI + L F+ + ++ AM LD T
Sbjct: 268 LWFEKCIVETENLEERVAVVSRIIEILQVFQELN-NFNGVLEVVSAMNSSPVYRLDHT-- 324
Query: 192 IVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLY 241
F+Q+PSR +A + +DHY RSI N + F G+Y
Sbjct: 325 ---FEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI---NPPCVPFFGIY 368
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 139 FWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAM-------LDLTNC 191
W + +L VAV+ ++ EI + L F+ + ++ AM LD T
Sbjct: 268 LWFEKCIVETENLEERVAVVSRIIEILQVFQELN-NFNGVLEVVSAMNSSPVYRLDHT-- 324
Query: 192 IVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLY 241
F+Q+PSR +A + +DHY RSI N + F G+Y
Sbjct: 325 ---FEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI---NPPCVPFFGIY 368
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 112 LFKTLSSYSWDAKMVLSLAAFAVNYGE--FWLVAQLCTQNSLANSVAVLKQLPEIPTGYD 169
++ T +++ K +L F + E FW+V ++C + L+ V +LK+ +I
Sbjct: 480 IYHTFGRHNF-KKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIA---- 534
Query: 170 ALKPQFDELNNLIGAMLDLTNCIVE-----FKQLPSRYISNDGKAMS-MDQDHYHAAY 221
A ++ LN+ ++ L+N V +++LPS++ + S MD H AY
Sbjct: 535 AHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAY 592
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKE 462
+ P ++K++K+EWK I S G + +N + GI AFP AE KE
Sbjct: 21 VNPNLLKHIKKEWK-EVLDIGCSSGALGAAIKENGTR---VSGIEAFPEAAEQA----KE 72
Query: 463 KPWTLELLVGDIDATILEWMKEERFICLYGGN 494
K +++GDI+ + +EE+F C+ G+
Sbjct: 73 K--LDHVVLGDIETXDXPY-EEEQFDCVIFGD 101
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 623 NRLILAGVNGAIPGTVQCADCGRDME 648
NR+I G NG + T C D G +ME
Sbjct: 71 NRIIATGYNGGVADTDNCDDVGHEME 96
>pdb|4DGW|B Chain B, Crystal Structure Of The Sf3a Splicing Factor Complex Of
U2 Snrnp
Length = 152
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 196 KQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRILSFRGLYXXXXXXXXXXXXXX 255
K + + IS DG+A + H + TF VA R+ SF G
Sbjct: 22 KSIVEQXISKDGEARLNFXNSSHPLHKTFTDFVAQYKRVYSFTG--------------QE 67
Query: 256 YKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRI 293
K S + +N ++ ++W + DK R+ + L +I
Sbjct: 68 IKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKI 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,460,233
Number of Sequences: 62578
Number of extensions: 728125
Number of successful extensions: 1557
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 14
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)