BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046837
(658 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 351 LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKY 410
L +Y +L IV+ V G D + D F+ +MPW ++
Sbjct: 65 LVEVYNELSSKVGFEIVF---VSGDEDEESFGDYFR----KMPWLAV---PFTDSETRDR 114
Query: 411 VKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAE 454
+ E +K +V VD G+++N+N + +G A+PFT E
Sbjct: 115 LDELFKVRGIPNLVMVDDHGKLVNENGVGVIRSYGADAYPFTPE 158
Score = 33.1 bits (74), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 351 LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ--DPAMIQPAVI 408
L +YK +KE E ++ S DR Q + F +MPW ++ DP A
Sbjct: 385 LVEVYKQIKERNEA----FELIFISSDRDQ--ESFDEYYSQMPWLALPFGDPRKASLA-- 436
Query: 409 KYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAE 454
+ +K ++ ++ P G+ + + A + G A+PFT E
Sbjct: 437 ----KTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEE 478
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 313 DLVDGETRTTVQIHVLKKKHVLLLISR---PDDISQEEILFLSNMYKDLKES-KECRIVW 368
D V G+ V + L K VLL S P + + L N Y +KE + IV+
Sbjct: 349 DFVLGKDGAKVPVSELVGKTVLLYFSAKWCPP--CRAFLPKLVNEYNKIKEKHNDFEIVF 406
Query: 369 LPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDP 428
+ S DR+Q+ + MPW ++ + + + + +K + +V++ P
Sbjct: 407 I-----SSDREQS--SYDEFFSGMPWLALP----LGDERKQQLSKIFKITGIPSLVAIGP 455
Query: 429 QGRILNQNAFHTLWIWGISAFPFT 452
G+ + ++A L G AFPFT
Sbjct: 456 DGKTVTKDAKTPLVAHGADAFPFT 479
>sp|Q9Z1C7|RPGF4_RAT Rap guanine nucleotide exchange factor 4 (Fragment) OS=Rattus
norvegicus GN=Rapgef4 PE=2 SV=1
Length = 436
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 135 NYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNC--- 191
N +FW+V ++C + L+ V +LK+ +I A ++ LN+ G ++ L+N
Sbjct: 246 NEIQFWVVTEICLCSQLSKRVQLLKKCIKIA----AHCKEYKNLNSFFGIVMGLSNVAES 301
Query: 192 --IVEFKQLPSRYISNDGKAMS-MDQDHYHAAY 221
+ +++LPS++ + S MD H AY
Sbjct: 302 RLALTWEKLPSKFKKFYAEFESLMDPSRNHKAY 334
>sp|Q9BXX2|AN30B_HUMAN Ankyrin repeat domain-containing protein 30B OS=Homo sapiens
GN=ANKRD30B PE=2 SV=3
Length = 1392
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 27/154 (17%)
Query: 119 YSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSV-AVLKQLPEIPTGYDALKPQFDE 177
YSWD+ + +A Q+C S+ V + +++ E+P A KP +
Sbjct: 489 YSWDSGSLFESSA----------KTQVCIPESMYQKVMEINREVEELPEKPSAFKPAVEM 538
Query: 178 LNNLIGAMLDLTN--CIVEFKQLPSRYISNDGKAMSMDQDHYHAAYWTFRSIVACNSRIL 235
+ +L N + + PS D + S D S C + +
Sbjct: 539 QKTVPNKAFELKNEQTLRAAQMFPSESKQKDDEENSWD------------SESPCET--V 584
Query: 236 SFRGLYTPSTTHELELSTLTYKVSNIHVSENLTK 269
S + +Y P TH+ E TL+ K+ V + L K
Sbjct: 585 SQKDVYLPKATHQKEFDTLSGKLEESPVKDGLLK 618
>sp|Q8WZA2|RPGF4_HUMAN Rap guanine nucleotide exchange factor 4 OS=Homo sapiens GN=RAPGEF4
PE=1 SV=1
Length = 1011
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 112 LFKTLSSYSWDAKMVLSLAAFAVNYGE--FWLVAQLCTQNSLANSVAVLKQLPEIPTGYD 169
++ T +++ K +L F + E FW+V ++C + L+ V +LK+ +I
Sbjct: 797 IYHTFGRHNF-KKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIA---- 851
Query: 170 ALKPQFDELNNLIGAMLDLTNCIVE-----FKQLPSRYISNDGKAMS-MDQDHYHAAY 221
A ++ LN+ ++ L+N V +++LPS++ + S MD H AY
Sbjct: 852 AHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAY 909
>sp|Q9EQZ6|RPGF4_MOUSE Rap guanine nucleotide exchange factor 4 OS=Mus musculus GN=Rapgef4
PE=1 SV=1
Length = 1011
Score = 33.1 bits (74), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 112 LFKTLSSYSWDAKMVLSLAAFAVNYGE--FWLVAQLCTQNSLANSVAVLKQLPEIPTGYD 169
++ T +++ K +L F + E FW+V ++C + L+ V +LK+ +I
Sbjct: 797 IYHTFGRHNF-KKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIA---- 851
Query: 170 ALKPQFDELNNLIGAMLDLTNCIVE-----FKQLPSRYISNDGKAMS-MDQDHYHAAY 221
A ++ LN+ ++ L+N V +++LPS++ + S MD H AY
Sbjct: 852 AHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAY 909
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,983,091
Number of Sequences: 539616
Number of extensions: 10115261
Number of successful extensions: 25049
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 25041
Number of HSP's gapped (non-prelim): 23
length of query: 658
length of database: 191,569,459
effective HSP length: 124
effective length of query: 534
effective length of database: 124,657,075
effective search space: 66566878050
effective search space used: 66566878050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)