Query 046837
Match_columns 658
No_of_seqs 151 out of 190
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14576 SEO_N: Sieve element 100.0 8E-105 2E-109 818.4 19.4 279 12-299 1-286 (286)
2 PF14577 SEO_C: Sieve element 100.0 4.4E-81 9.5E-86 626.8 17.5 206 453-658 1-235 (235)
3 KOG2501 Thioredoxin, nucleored 99.9 3.8E-24 8.2E-29 204.8 10.1 130 314-462 16-151 (157)
4 cd03009 TryX_like_TryX_NRX Try 99.8 7.1E-20 1.5E-24 166.6 13.0 126 315-451 3-131 (131)
5 cd03008 TryX_like_RdCVF Trypar 99.8 1.7E-18 3.6E-23 164.9 9.8 117 321-449 16-142 (146)
6 cd02964 TryX_like_family Trypa 99.7 1.4E-17 2.9E-22 152.8 12.7 125 314-451 3-132 (132)
7 PF13905 Thioredoxin_8: Thiore 99.5 1.3E-13 2.9E-18 118.4 11.2 91 330-432 1-95 (95)
8 cd02968 SCO SCO (an acronym fo 98.7 7.4E-08 1.6E-12 88.2 10.0 108 318-434 10-138 (142)
9 cd03012 TlpA_like_DipZ_like Tl 98.7 2E-07 4.3E-12 84.9 11.3 106 319-435 12-121 (126)
10 cd02967 mauD Methylamine utili 98.6 2.3E-07 5E-12 82.0 9.6 102 318-436 8-112 (114)
11 cd02966 TlpA_like_family TlpA- 98.6 2.8E-07 6E-12 78.6 9.5 104 317-435 6-113 (116)
12 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 4.3E-06 9.3E-11 74.5 11.8 105 316-434 11-123 (124)
13 PRK03147 thiol-disulfide oxido 98.4 1.6E-06 3.5E-11 82.1 9.3 107 315-435 46-154 (173)
14 cd03015 PRX_Typ2cys Peroxiredo 98.4 3.9E-06 8.4E-11 80.9 11.9 104 319-436 18-136 (173)
15 cd02969 PRX_like1 Peroxiredoxi 98.3 2.7E-06 5.8E-11 81.5 9.9 110 317-435 11-125 (171)
16 cd02971 PRX_family Peroxiredox 98.3 4.3E-06 9.4E-11 76.2 9.6 105 317-435 9-125 (140)
17 cd03017 PRX_BCP Peroxiredoxin 98.3 4.2E-06 9.2E-11 76.4 8.9 102 319-435 12-125 (140)
18 PRK14018 trifunctional thiored 98.2 4.6E-06 1E-10 94.4 10.7 107 317-435 45-155 (521)
19 cd03010 TlpA_like_DsbE TlpA-li 98.2 7.4E-06 1.6E-10 74.2 10.0 99 321-435 16-116 (127)
20 PRK09437 bcp thioredoxin-depen 98.1 8.7E-06 1.9E-10 76.4 8.7 105 317-435 17-135 (154)
21 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 7.8E-06 1.7E-10 73.2 7.8 93 319-430 9-104 (123)
22 PF08534 Redoxin: Redoxin; In 98.1 2.4E-05 5.2E-10 72.4 11.3 106 317-436 15-131 (146)
23 cd03018 PRX_AhpE_like Peroxire 98.1 1.2E-05 2.7E-10 74.3 9.3 106 317-435 14-129 (149)
24 PLN02412 probable glutathione 98.1 3.7E-05 8.1E-10 74.3 11.4 117 317-436 16-147 (167)
25 PRK15412 thiol:disulfide inter 98.0 2.5E-05 5.4E-10 76.5 9.7 99 320-435 57-158 (185)
26 TIGR02661 MauD methylamine deh 98.0 4.3E-05 9.4E-10 75.3 10.8 97 318-434 60-161 (189)
27 KOG2501 Thioredoxin, nucleored 98.0 3.7E-06 7.9E-11 81.7 2.8 50 483-534 31-86 (157)
28 PTZ00256 glutathione peroxidas 98.0 8.6E-05 1.9E-09 72.7 12.4 116 317-435 27-163 (183)
29 TIGR02540 gpx7 putative glutat 98.0 6.9E-05 1.5E-09 70.7 11.4 111 318-435 10-135 (153)
30 PLN02399 phospholipid hydroper 98.0 7E-05 1.5E-09 77.2 11.8 117 317-435 86-216 (236)
31 cd00340 GSH_Peroxidase Glutath 97.9 2.9E-05 6.3E-10 73.3 7.9 52 318-371 10-62 (152)
32 TIGR00385 dsbE periplasmic pro 97.9 4.1E-05 8.8E-10 74.1 9.1 97 322-435 54-153 (173)
33 PRK10382 alkyl hydroperoxide r 97.9 6E-05 1.3E-09 74.9 10.2 110 314-435 16-134 (187)
34 TIGR03137 AhpC peroxiredoxin. 97.9 4.7E-05 1E-09 74.9 9.3 101 322-436 23-135 (187)
35 cd03014 PRX_Atyp2cys Peroxired 97.9 6.8E-05 1.5E-09 69.3 9.3 105 317-436 13-126 (143)
36 PLN02919 haloacid dehalogenase 97.8 8.7E-05 1.9E-09 90.5 11.7 103 319-435 408-518 (1057)
37 cd02970 PRX_like2 Peroxiredoxi 97.8 8.2E-05 1.8E-09 68.2 8.8 102 318-434 10-144 (149)
38 PTZ00056 glutathione peroxidas 97.8 0.0002 4.2E-09 71.6 11.8 112 318-434 27-159 (199)
39 PTZ00253 tryparedoxin peroxida 97.8 0.00015 3.3E-09 71.9 10.8 109 318-434 24-141 (199)
40 PRK00522 tpx lipid hydroperoxi 97.6 0.0006 1.3E-08 65.9 12.1 104 318-436 32-147 (167)
41 PF02630 SCO1-SenC: SCO1/SenC; 97.6 0.00033 7.2E-09 68.4 10.1 110 314-434 37-169 (174)
42 PRK13190 putative peroxiredoxi 97.6 0.00024 5.2E-09 71.0 9.2 99 322-434 19-131 (202)
43 PTZ00137 2-Cys peroxiredoxin; 97.4 0.00064 1.4E-08 71.2 9.5 147 274-436 36-204 (261)
44 PRK15000 peroxidase; Provision 97.4 0.00087 1.9E-08 67.1 9.6 93 329-435 33-140 (200)
45 cd02950 TxlA TRX-like protein 97.4 0.00065 1.4E-08 64.3 8.1 73 328-435 18-92 (142)
46 cd03016 PRX_1cys Peroxiredoxin 97.3 0.0012 2.6E-08 65.9 9.5 104 322-435 16-132 (203)
47 PF13098 Thioredoxin_2: Thiore 97.2 0.0011 2.5E-08 58.4 7.8 89 329-434 4-97 (112)
48 TIGR01626 ytfJ_HI0045 conserve 97.2 0.0015 3.2E-08 65.3 8.6 103 319-435 48-162 (184)
49 TIGR02740 TraF-like TraF-like 97.2 0.00037 8.1E-09 73.0 4.4 89 321-437 157-247 (271)
50 PRK13728 conjugal transfer pro 97.1 0.0016 3.4E-08 65.0 8.0 87 318-435 61-152 (181)
51 cd02955 SSP411 TRX domain, SSP 97.1 0.0028 6E-08 59.4 8.8 79 329-436 14-97 (124)
52 cd02953 DsbDgamma DsbD gamma f 97.1 0.0026 5.7E-08 55.8 8.2 72 329-433 10-87 (104)
53 TIGR02738 TrbB type-F conjugat 97.0 0.0047 1E-07 59.8 10.2 82 327-434 47-133 (153)
54 PRK13599 putative peroxiredoxi 97.0 0.0029 6.2E-08 64.3 9.0 110 317-435 15-134 (215)
55 PRK13191 putative peroxiredoxi 97.0 0.0034 7.4E-08 63.7 9.0 102 319-435 22-139 (215)
56 PRK13189 peroxiredoxin; Provis 96.9 0.0043 9.4E-08 63.2 9.5 102 318-434 23-140 (222)
57 PRK10606 btuE putative glutath 96.9 0.009 1.9E-07 59.5 11.0 123 318-452 13-170 (183)
58 cd02951 SoxW SoxW family; SoxW 96.6 0.0065 1.4E-07 55.2 7.4 82 329-434 12-100 (125)
59 cd02956 ybbN ybbN protein fami 96.5 0.0091 2E-07 51.3 7.2 67 329-433 11-79 (96)
60 cd02985 TRX_CDSP32 TRX family, 96.3 0.02 4.4E-07 50.8 8.5 69 329-433 14-84 (103)
61 PF13905 Thioredoxin_8: Thiore 96.0 0.013 2.8E-07 50.3 5.2 54 485-538 1-57 (95)
62 COG1999 Uncharacterized protei 95.9 0.094 2E-06 53.1 12.0 111 315-434 52-185 (207)
63 cd02959 ERp19 Endoplasmic reti 95.8 0.015 3.3E-07 53.4 5.4 71 329-435 18-92 (117)
64 cd02999 PDI_a_ERp44_like PDIa 95.8 0.017 3.6E-07 51.4 5.4 69 327-433 15-85 (100)
65 cd02949 TRX_NTR TRX domain, no 95.7 0.05 1.1E-06 47.4 8.0 67 329-433 12-80 (97)
66 cd02952 TRP14_like Human TRX-r 95.7 0.038 8.2E-07 51.7 7.4 78 329-436 20-107 (119)
67 PTZ00051 thioredoxin; Provisio 95.5 0.048 1E-06 46.9 7.1 65 330-433 18-84 (98)
68 TIGR01126 pdi_dom protein disu 95.5 0.066 1.4E-06 45.7 7.6 69 329-432 12-82 (102)
69 PRK10996 thioredoxin 2; Provis 95.4 0.043 9.3E-07 51.7 6.8 69 329-435 51-121 (139)
70 cd02948 TRX_NDPK TRX domain, T 95.3 0.088 1.9E-06 46.6 8.3 67 329-433 16-84 (102)
71 TIGR02187 GlrX_arch Glutaredox 95.2 0.34 7.4E-06 48.7 12.9 146 330-528 20-176 (215)
72 cd03005 PDI_a_ERp46 PDIa famil 95.0 0.063 1.4E-06 46.2 6.3 66 332-433 18-86 (102)
73 COG1225 Bcp Peroxiredoxin [Pos 95.0 0.32 7E-06 47.8 11.5 105 316-434 16-134 (157)
74 cd03008 TryX_like_RdCVF Trypar 94.9 0.095 2.1E-06 50.6 7.8 53 484-536 24-85 (146)
75 cd02963 TRX_DnaJ TRX domain, D 94.8 0.078 1.7E-06 47.8 6.5 71 328-435 22-94 (111)
76 cd02984 TRX_PICOT TRX domain, 94.8 0.11 2.4E-06 44.5 7.0 66 330-433 14-81 (97)
77 PHA02278 thioredoxin-like prot 94.7 0.052 1.1E-06 49.1 5.1 71 329-433 13-85 (103)
78 cd03000 PDI_a_TMX3 PDIa family 94.7 0.081 1.7E-06 46.6 6.1 65 329-427 14-80 (104)
79 PRK09381 trxA thioredoxin; Pro 94.7 0.15 3.3E-06 45.0 7.9 67 330-434 21-89 (109)
80 cd02993 PDI_a_APS_reductase PD 94.6 0.14 3.1E-06 45.6 7.5 69 329-431 20-90 (109)
81 cd03002 PDI_a_MPD1_like PDI fa 94.4 0.15 3.2E-06 44.7 7.1 67 330-431 18-86 (109)
82 PRK00293 dipZ thiol:disulfide 94.4 0.093 2E-06 60.6 7.3 72 329-434 473-549 (571)
83 cd02961 PDI_a_family Protein D 94.3 0.22 4.8E-06 41.6 7.7 66 330-430 15-82 (101)
84 cd03003 PDI_a_ERdj5_N PDIa fam 93.8 0.25 5.5E-06 43.1 7.3 66 329-432 17-84 (101)
85 cd02998 PDI_a_ERp38 PDIa famil 93.7 0.22 4.7E-06 42.8 6.7 68 330-431 18-87 (105)
86 cd02954 DIM1 Dim1 family; Dim1 93.5 0.15 3.3E-06 47.4 5.7 70 329-435 13-83 (114)
87 cd02996 PDI_a_ERp44 PDIa famil 93.5 0.21 4.5E-06 44.2 6.3 69 330-432 18-90 (108)
88 TIGR01068 thioredoxin thioredo 93.4 0.39 8.6E-06 40.6 7.6 66 330-433 14-81 (101)
89 cd02958 UAS UAS family; UAS is 92.9 0.52 1.1E-05 42.4 8.1 24 411-434 68-92 (114)
90 PTZ00102 disulphide isomerase; 92.9 0.2 4.4E-06 55.2 6.5 69 329-432 374-444 (477)
91 cd03013 PRX5_like Peroxiredoxi 92.9 0.97 2.1E-05 43.4 10.4 103 319-435 17-136 (155)
92 cd02997 PDI_a_PDIR PDIa family 92.7 0.4 8.6E-06 41.2 6.8 71 329-433 16-88 (104)
93 cd02960 AGR Anterior Gradient 92.6 0.22 4.8E-06 47.4 5.4 91 329-461 22-117 (130)
94 cd02994 PDI_a_TMX PDIa family, 92.3 0.69 1.5E-05 40.1 7.8 67 328-432 15-83 (101)
95 cd02957 Phd_like Phosducin (Ph 91.8 0.81 1.8E-05 41.2 8.0 85 330-458 24-110 (113)
96 PF00085 Thioredoxin: Thioredo 91.8 0.3 6.6E-06 41.6 4.9 67 330-433 17-85 (103)
97 cd02947 TRX_family TRX family; 91.7 0.8 1.7E-05 37.2 7.2 62 331-431 11-74 (93)
98 TIGR01295 PedC_BrcD bacterioci 91.3 0.65 1.4E-05 43.1 6.9 37 330-371 23-61 (122)
99 cd03001 PDI_a_P5 PDIa family, 90.9 1.2 2.5E-05 38.4 7.7 63 330-429 18-82 (103)
100 cd03004 PDI_a_ERdj5_C PDIa fam 90.9 1.2 2.6E-05 38.8 7.8 66 330-432 19-86 (104)
101 cd02975 PfPDO_like_N Pyrococcu 90.5 0.54 1.2E-05 42.8 5.5 62 330-429 22-85 (113)
102 KOG2792 Putative cytochrome C 89.7 2.5 5.5E-05 44.9 10.2 57 315-372 124-185 (280)
103 cd02992 PDI_a_QSOX PDIa family 89.6 1.8 3.8E-05 39.4 8.1 75 330-437 19-95 (114)
104 cd02987 Phd_like_Phd Phosducin 89.4 1.4 3E-05 43.6 7.7 86 330-459 83-170 (175)
105 cd02989 Phd_like_TxnDC9 Phosdu 88.9 1.1 2.4E-05 40.8 6.3 65 330-433 22-88 (113)
106 cd02964 TryX_like_family Trypa 88.4 0.95 2.1E-05 41.6 5.5 63 470-536 3-72 (132)
107 TIGR01295 PedC_BrcD bacterioci 87.8 0.71 1.5E-05 42.9 4.3 45 480-526 18-63 (122)
108 PTZ00443 Thioredoxin domain-co 86.8 1.8 4E-05 44.6 7.0 66 330-433 52-119 (224)
109 cd02962 TMX2 TMX2 family; comp 86.0 1.4 2.9E-05 42.9 5.3 39 330-370 47-87 (152)
110 COG0450 AhpC Peroxiredoxin [Po 85.9 3 6.6E-05 42.5 7.9 103 321-433 24-137 (194)
111 smart00594 UAS UAS domain. 85.7 2.8 6E-05 38.6 6.9 67 329-430 26-97 (122)
112 cd03009 TryX_like_TryX_NRX Try 85.7 1.5 3.3E-05 39.8 5.2 62 473-536 8-73 (131)
113 cd02955 SSP411 TRX domain, SSP 85.6 2.3 5E-05 39.9 6.5 98 482-609 12-115 (124)
114 cd02995 PDI_a_PDI_a'_C PDIa fa 85.4 4.6 0.0001 34.5 7.8 39 330-371 18-58 (104)
115 cd02982 PDI_b'_family Protein 85.1 4.5 9.7E-05 34.9 7.7 62 330-428 12-77 (103)
116 TIGR00411 redox_disulf_1 small 85.1 4.4 9.6E-05 33.4 7.3 34 335-371 4-39 (82)
117 cd03026 AhpF_NTD_C TRX-GRX-lik 84.8 3.5 7.7E-05 36.3 6.9 71 325-435 7-78 (89)
118 cd02965 HyaE HyaE family; HyaE 84.2 5.2 0.00011 37.3 8.0 68 330-435 27-98 (111)
119 PTZ00062 glutaredoxin; Provisi 84.0 2 4.4E-05 43.8 5.7 127 331-525 18-153 (204)
120 cd03006 PDI_a_EFP1_N PDIa fami 83.3 3.5 7.6E-05 38.0 6.5 66 329-431 28-95 (113)
121 PF00255 GSHPx: Glutathione pe 83.3 4.6 0.0001 37.4 7.2 53 318-372 9-62 (108)
122 cd02950 TxlA TRX-like protein 81.7 3 6.4E-05 39.6 5.5 45 481-525 16-61 (142)
123 KOG0907 Thioredoxin [Posttrans 81.6 4.1 8.8E-05 37.4 6.2 72 330-438 21-96 (106)
124 cd03065 PDI_b_Calsequestrin_N 81.5 1.5 3.4E-05 41.0 3.5 24 410-434 78-101 (120)
125 cd01659 TRX_superfamily Thiore 81.2 8.3 0.00018 27.9 6.8 60 335-429 2-63 (69)
126 PTZ00102 disulphide isomerase; 81.2 2.9 6.2E-05 46.2 6.0 70 329-432 48-119 (477)
127 PF14595 Thioredoxin_9: Thiore 80.5 2.3 5.1E-05 40.1 4.3 72 327-433 38-111 (129)
128 TIGR01130 ER_PDI_fam protein d 78.8 25 0.00055 38.3 12.3 43 483-525 362-408 (462)
129 smart00834 CxxC_CXXC_SSSS Puta 78.7 1.3 2.9E-05 33.0 1.7 30 621-651 10-40 (41)
130 PF13728 TraF: F plasmid trans 76.5 8.8 0.00019 39.3 7.4 86 324-437 114-201 (215)
131 TIGR01130 ER_PDI_fam protein d 76.1 5.6 0.00012 43.3 6.3 68 329-430 17-86 (462)
132 cd02953 DsbDgamma DsbD gamma f 75.9 6.2 0.00013 34.5 5.4 45 481-525 7-55 (104)
133 cd02986 DLP Dim1 family, Dim1- 75.5 6.9 0.00015 36.8 5.8 39 329-371 13-52 (114)
134 KOG0852 Alkyl hydroperoxide re 74.6 4.3 9.3E-05 41.1 4.4 131 314-468 18-177 (196)
135 cd02973 TRX_GRX_like Thioredox 73.9 13 0.00027 29.9 6.3 14 412-425 45-58 (67)
136 PRK11657 dsbG disulfide isomer 73.2 26 0.00055 36.7 10.0 98 330-432 117-232 (251)
137 PF09723 Zn-ribbon_8: Zinc rib 71.6 2.5 5.5E-05 32.6 1.7 31 621-652 10-42 (42)
138 PRK10996 thioredoxin 2; Provis 70.5 9.2 0.0002 36.0 5.5 47 479-525 46-93 (139)
139 PF00085 Thioredoxin: Thioredo 69.9 13 0.00028 31.5 5.8 45 482-526 13-59 (103)
140 TIGR02187 GlrX_arch Glutaredox 69.4 12 0.00027 37.6 6.5 28 328-358 131-158 (215)
141 PRK03147 thiol-disulfide oxido 69.2 9.1 0.0002 36.2 5.2 54 484-537 60-115 (173)
142 cd02949 TRX_NTR TRX domain, no 69.0 15 0.00033 31.8 6.2 44 483-526 11-55 (97)
143 PHA02125 thioredoxin-like prot 68.7 15 0.00032 30.8 5.9 15 410-424 37-51 (75)
144 TIGR00424 APS_reduc 5'-adenyly 68.6 15 0.00032 42.1 7.6 68 329-430 370-439 (463)
145 PF13899 Thioredoxin_7: Thiore 67.9 6.9 0.00015 33.2 3.7 48 482-529 14-65 (82)
146 cd02947 TRX_family TRX family; 67.5 14 0.00031 29.8 5.4 44 482-526 7-51 (93)
147 cd03010 TlpA_like_DsbE TlpA-li 66.4 11 0.00024 33.9 5.0 48 484-535 24-74 (127)
148 PF13098 Thioredoxin_2: Thiore 66.1 11 0.00025 32.9 4.9 51 483-533 3-57 (112)
149 cd02961 PDI_a_family Protein D 65.5 18 0.00039 30.0 5.7 46 480-525 10-58 (101)
150 TIGR00412 redox_disulf_2 small 64.6 19 0.00041 30.4 5.8 16 415-433 45-60 (76)
151 cd03003 PDI_a_ERdj5_N PDIa fam 63.5 16 0.00034 31.8 5.2 46 481-526 14-60 (101)
152 cd02967 mauD Methylamine utili 63.3 14 0.0003 32.5 4.9 60 476-537 13-73 (114)
153 PLN02309 5'-adenylylsulfate re 62.2 26 0.00057 40.1 7.9 68 329-430 364-433 (457)
154 cd02966 TlpA_like_family TlpA- 62.0 17 0.00037 30.5 5.1 55 484-538 18-75 (116)
155 PF06110 DUF953: Eukaryotic pr 60.7 18 0.00038 34.2 5.3 79 330-435 19-105 (119)
156 cd02956 ybbN ybbN protein fami 60.6 19 0.0004 30.8 5.1 42 484-525 11-53 (96)
157 cd02951 SoxW SoxW family; SoxW 58.9 16 0.00034 33.1 4.5 50 478-527 6-60 (125)
158 cd02948 TRX_NDPK TRX domain, T 58.5 21 0.00046 31.4 5.2 45 481-525 13-59 (102)
159 PF08209 Sgf11: Sgf11 (transcr 58.4 5 0.00011 30.0 1.0 14 636-649 3-16 (33)
160 cd03001 PDI_a_P5 PDIa family, 58.1 27 0.00059 29.8 5.7 43 484-526 17-60 (103)
161 TIGR02605 CxxC_CxxC_SSSS putat 57.1 7.9 0.00017 30.5 2.0 31 621-652 10-42 (52)
162 TIGR00385 dsbE periplasmic pro 56.8 17 0.00038 35.1 4.7 49 483-534 61-110 (173)
163 TIGR01068 thioredoxin thioredo 56.7 18 0.00038 30.4 4.3 43 484-526 13-56 (101)
164 PF02591 DUF164: Putative zinc 52.1 7.4 0.00016 31.5 1.1 13 635-647 44-56 (56)
165 TIGR02661 MauD methylamine deh 51.7 24 0.00051 34.9 4.8 50 483-535 72-122 (189)
166 cd02988 Phd_like_VIAF Phosduci 51.3 53 0.0012 33.1 7.3 86 330-459 102-187 (192)
167 COG3118 Thioredoxin domain-con 51.2 45 0.00098 36.4 7.0 85 326-447 39-132 (304)
168 PF13899 Thioredoxin_7: Thiore 50.9 12 0.00026 31.7 2.3 20 329-349 16-35 (82)
169 COG0386 BtuE Glutathione perox 50.5 26 0.00057 34.9 4.8 53 317-371 12-65 (162)
170 TIGR02739 TraF type-F conjugat 50.5 23 0.0005 37.6 4.7 88 324-439 144-233 (256)
171 TIGR01126 pdi_dom protein disu 50.2 28 0.00061 29.4 4.5 44 480-525 8-56 (102)
172 PRK15412 thiol:disulfide inter 50.0 26 0.00056 34.4 4.8 51 483-536 66-117 (185)
173 PHA02278 thioredoxin-like prot 49.3 20 0.00044 32.5 3.6 44 482-525 11-55 (103)
174 PTZ00051 thioredoxin; Provisio 48.8 35 0.00076 29.1 4.9 31 482-512 15-46 (98)
175 KOG0910 Thioredoxin-like prote 48.5 23 0.0005 34.9 4.1 42 330-372 61-119 (150)
176 cd03000 PDI_a_TMX3 PDIa family 48.2 32 0.00069 30.1 4.6 52 473-525 4-59 (104)
177 COG2143 Thioredoxin-related pr 47.9 32 0.0007 34.5 4.9 87 328-433 40-129 (182)
178 cd03020 DsbA_DsbC_DsbG DsbA fa 47.5 1.9E+02 0.0041 28.5 10.4 94 330-433 77-184 (197)
179 cd02968 SCO SCO (an acronym fo 47.4 23 0.0005 32.2 3.7 44 484-527 21-70 (142)
180 cd02954 DIM1 Dim1 family; Dim1 47.2 40 0.00087 31.6 5.3 45 484-528 13-58 (114)
181 PF13408 Zn_ribbon_recom: Reco 46.1 9.3 0.0002 30.2 0.8 14 636-649 4-17 (58)
182 cd03004 PDI_a_ERdj5_C PDIa fam 45.9 43 0.00093 29.0 5.1 42 484-525 18-60 (104)
183 cd03002 PDI_a_MPD1_like PDI fa 45.6 33 0.00071 29.8 4.3 43 484-526 17-60 (109)
184 COG4481 Uncharacterized protei 45.6 12 0.00026 31.2 1.3 29 617-647 14-44 (60)
185 cd02984 TRX_PICOT TRX domain, 45.3 63 0.0014 27.4 5.9 40 485-524 14-54 (97)
186 TIGR02180 GRX_euk Glutaredoxin 44.5 59 0.0013 26.8 5.5 57 335-425 2-60 (84)
187 cd03012 TlpA_like_DipZ_like Tl 44.1 45 0.00098 30.2 5.1 44 477-524 17-64 (126)
188 PF13778 DUF4174: Domain of un 44.1 1.7E+02 0.0036 27.2 8.9 87 324-434 2-93 (118)
189 cd02975 PfPDO_like_N Pyrococcu 44.0 51 0.0011 29.9 5.4 44 482-526 19-63 (113)
190 PLN00410 U5 snRNP protein, DIM 43.9 1.1E+02 0.0024 29.8 7.8 67 329-432 22-90 (142)
191 KOG0191 Thioredoxin/protein di 42.8 92 0.002 34.2 8.1 150 330-525 47-205 (383)
192 cd03005 PDI_a_ERp46 PDIa famil 42.3 41 0.00089 28.6 4.3 41 482-525 14-60 (102)
193 PRK09381 trxA thioredoxin; Pro 42.1 48 0.001 29.0 4.8 44 483-526 19-63 (109)
194 KOG1651 Glutathione peroxidase 41.6 37 0.00081 34.1 4.3 53 317-371 21-75 (171)
195 cd02985 TRX_CDSP32 TRX family, 41.4 38 0.00083 29.9 4.1 39 484-525 14-55 (103)
196 PF13913 zf-C2HC_2: zinc-finge 41.0 12 0.00027 25.9 0.7 13 636-648 1-13 (25)
197 cd02959 ERp19 Endoplasmic reti 40.9 35 0.00077 31.3 3.9 30 482-511 16-46 (117)
198 PF03190 Thioredox_DsbH: Prote 40.7 43 0.00093 33.4 4.6 73 329-434 36-117 (163)
199 cd02995 PDI_a_PDI_a'_C PDIa fa 40.4 59 0.0013 27.6 5.0 43 484-526 17-62 (104)
200 cd02996 PDI_a_ERp44 PDIa famil 40.1 49 0.0011 29.1 4.6 47 480-526 13-66 (108)
201 cd00674 LysRS_core_class_I cat 39.5 1.4E+02 0.003 33.2 8.8 26 631-656 163-198 (353)
202 cd02997 PDI_a_PDIR PDIa family 39.4 42 0.00092 28.6 4.0 36 478-513 10-46 (104)
203 cd03011 TlpA_like_ScsD_MtbDsbE 38.9 40 0.00087 29.9 3.8 50 483-536 18-69 (123)
204 PRK13703 conjugal pilus assemb 38.8 79 0.0017 33.5 6.5 87 325-439 138-226 (248)
205 COG3024 Uncharacterized protei 37.2 15 0.00033 31.4 0.8 16 634-649 4-19 (65)
206 cd02999 PDI_a_ERp44_like PDIa 37.1 54 0.0012 29.0 4.4 38 484-524 17-57 (100)
207 PRK10877 protein disulfide iso 36.9 2.2E+02 0.0049 29.4 9.4 93 330-433 107-214 (232)
208 cd02960 AGR Anterior Gradient 36.3 57 0.0012 31.3 4.6 45 478-522 16-64 (130)
209 cd02963 TRX_DnaJ TRX domain, D 36.1 58 0.0013 29.2 4.4 41 484-526 23-67 (111)
210 TIGR01206 lysW lysine biosynth 36.0 33 0.00071 28.3 2.5 28 621-650 7-35 (54)
211 TIGR02740 TraF-like TraF-like 34.8 41 0.00089 35.6 3.7 41 484-526 165-206 (271)
212 PF07191 zinc-ribbons_6: zinc- 34.7 24 0.00053 30.7 1.6 25 633-657 26-55 (70)
213 cd02970 PRX_like2 Peroxiredoxi 34.4 95 0.0021 28.2 5.7 51 478-528 17-69 (149)
214 TIGR03143 AhpF_homolog putativ 34.3 4.9E+02 0.011 30.2 12.6 163 344-525 350-518 (555)
215 PRK02935 hypothetical protein; 34.2 21 0.00046 33.4 1.3 21 637-657 70-91 (110)
216 TIGR00411 redox_disulf_1 small 33.9 1.2E+02 0.0026 24.8 5.7 41 487-527 2-42 (82)
217 cd02998 PDI_a_ERp38 PDIa famil 33.7 63 0.0014 27.4 4.1 43 484-526 17-62 (105)
218 cd03006 PDI_a_EFP1_N PDIa fami 32.5 86 0.0019 28.9 5.0 42 482-525 26-70 (113)
219 PF13248 zf-ribbon_3: zinc-rib 31.3 21 0.00046 24.8 0.6 13 637-649 2-14 (26)
220 KOG1088 Uncharacterized conser 30.7 24 0.00053 33.6 1.1 14 634-647 95-108 (124)
221 PF14369 zf-RING_3: zinc-finge 30.5 38 0.00083 25.4 1.9 24 620-645 6-29 (35)
222 cd02965 HyaE HyaE family; HyaE 30.3 1.1E+02 0.0024 28.6 5.3 48 480-527 22-72 (111)
223 TIGR00100 hypA hydrogenase nic 30.0 55 0.0012 30.5 3.3 44 608-655 43-89 (115)
224 cd02989 Phd_like_TxnDC9 Phosdu 30.0 90 0.002 28.4 4.7 47 480-527 17-64 (113)
225 PF10601 zf-LITAF-like: LITAF- 29.7 40 0.00087 28.6 2.2 23 632-654 2-24 (73)
226 TIGR00467 lysS_arch lysyl-tRNA 29.4 32 0.0007 39.9 2.0 26 631-656 162-196 (515)
227 PF13453 zf-TFIIB: Transcripti 29.0 26 0.00057 26.7 0.8 12 639-650 1-12 (41)
228 PF01396 zf-C4_Topoisom: Topoi 28.8 24 0.00053 26.9 0.6 12 638-649 2-13 (39)
229 PRK07218 replication factor A; 28.0 25 0.00053 39.9 0.7 9 321-329 57-65 (423)
230 PF11023 DUF2614: Protein of u 27.8 26 0.00056 33.1 0.7 22 636-657 68-90 (114)
231 cd02993 PDI_a_APS_reductase PD 27.8 74 0.0016 28.3 3.7 43 483-525 19-63 (109)
232 PRK00750 lysK lysyl-tRNA synth 26.7 40 0.00086 39.0 2.1 27 631-657 169-206 (510)
233 PF04423 Rad50_zn_hook: Rad50 26.3 27 0.00058 28.0 0.5 10 639-648 22-31 (54)
234 PF00462 Glutaredoxin: Glutare 26.0 1.4E+02 0.0031 23.5 4.7 34 488-525 1-34 (60)
235 PRK00398 rpoP DNA-directed RNA 25.9 52 0.0011 25.6 2.0 12 637-648 21-32 (46)
236 COG1908 FrhD Coenzyme F420-red 25.7 2.1E+02 0.0045 27.8 6.2 61 299-371 41-104 (132)
237 PF09237 GAGA: GAGA factor; I 25.7 29 0.00062 28.8 0.5 14 636-649 23-36 (54)
238 COG1088 RfbB dTDP-D-glucose 4, 25.2 2E+02 0.0043 31.9 6.8 158 344-543 94-267 (340)
239 PF09695 YtfJ_HI0045: Bacteria 25.0 4.4E+02 0.0096 26.5 8.6 103 324-434 31-139 (160)
240 COG4545 Glutaredoxin-related p 25.0 1.8E+02 0.004 26.1 5.3 72 334-435 5-78 (85)
241 PF09767 DUF2053: Predicted me 24.9 88 0.0019 31.1 3.9 55 135-195 27-84 (159)
242 cd01973 Nitrogenase_VFe_beta_l 24.8 6.1E+02 0.013 29.0 11.0 157 342-528 171-342 (454)
243 PF13717 zinc_ribbon_4: zinc-r 24.2 41 0.00088 25.3 1.1 20 625-646 12-34 (36)
244 PF10013 DUF2256: Uncharacteri 23.8 35 0.00076 27.0 0.7 11 638-648 9-19 (42)
245 cd02972 DsbA_family DsbA famil 23.4 4E+02 0.0087 21.6 7.8 85 335-427 2-91 (98)
246 PF05176 ATP-synt_10: ATP10 pr 23.4 4.4E+02 0.0095 28.0 8.9 147 293-461 85-247 (252)
247 TIGR02196 GlrX_YruB Glutaredox 23.3 2.2E+02 0.0048 22.1 5.4 21 410-433 41-61 (74)
248 COG1579 Zn-ribbon protein, pos 23.2 31 0.00066 36.4 0.4 29 619-647 197-231 (239)
249 PRK12775 putative trifunctiona 23.1 36 0.00079 42.5 1.0 22 637-658 796-817 (1006)
250 TIGR02986 restrict_Alw26I type 22.8 28 0.00061 39.2 -0.0 65 577-654 33-99 (424)
251 KOG1321 Protoheme ferro-lyase 22.4 98 0.0021 34.4 3.9 52 330-399 225-287 (395)
252 smart00714 LITAF Possible memb 22.3 59 0.0013 27.2 1.8 20 635-654 1-20 (67)
253 cd02426 Pol_gamma_b_Cterm C-te 21.9 2E+02 0.0044 27.1 5.5 64 362-429 26-93 (128)
254 COG0526 TrxA Thiol-disulfide i 21.7 1.9E+02 0.0042 23.3 4.8 46 323-371 25-72 (127)
255 PF04556 DpnII: DpnII restrict 21.7 2.7E+02 0.0059 30.3 7.0 79 313-395 188-271 (286)
256 PF06073 DUF934: Bacterial pro 21.7 1.3E+02 0.0029 28.2 4.2 81 367-460 2-85 (110)
257 PRK00564 hypA hydrogenase nick 21.5 74 0.0016 29.8 2.5 44 607-654 42-89 (117)
258 PF14595 Thioredoxin_9: Thiore 21.5 1.3E+02 0.0028 28.5 4.2 45 484-531 40-87 (129)
259 PF13240 zinc_ribbon_2: zinc-r 21.4 43 0.00093 23.0 0.7 11 640-650 2-12 (23)
260 PLN00410 U5 snRNP protein, DIM 21.2 1.9E+02 0.004 28.2 5.2 45 484-528 22-67 (142)
261 PF09665 RE_Alw26IDE: Type II 21.0 31 0.00068 39.6 -0.1 62 577-654 33-99 (511)
262 PF14149 YhfH: YhfH-like prote 20.9 20 0.00044 27.6 -1.1 13 638-650 14-26 (37)
263 TIGR01031 rpmF_bact ribosomal 20.7 56 0.0012 26.9 1.3 18 633-650 22-39 (55)
264 PF03884 DUF329: Domain of unk 20.7 33 0.00071 28.7 -0.0 14 636-649 1-14 (57)
265 COG3118 Thioredoxin domain-con 20.6 1.3E+02 0.0029 32.9 4.5 43 484-526 42-85 (304)
266 cd02962 TMX2 TMX2 family; comp 20.6 1.9E+02 0.0042 28.1 5.3 46 484-529 46-93 (152)
No 1
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=100.00 E-value=8.1e-105 Score=818.42 Aligned_cols=279 Identities=48% Similarity=0.797 Sum_probs=259.8
Q ss_pred cccccHHHHHHHHhhcCCCCCccChhHhHHHHHHHHHhhcCCCCCC-CCCCCCCccchhhhccccccccc-CCCCCchhh
Q 046837 12 ASDDSAKMMKQVLANHAPAGHEVDVRPILSIIEDIFRRATATPSNI-DGVPNGKREHMDALHDNKSLAAF-STPEPLSDI 89 (658)
Q Consensus 12 ~sdd~i~~~~~I~~TH~pd~~~~Dv~~Ll~~venIl~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f-~~le~l~~~ 89 (658)
+|||++ ||||||+||+||||+|||+|||++||||++||++ ++ ++.....+.+.+++++++.+.++ +++||++++
T Consensus 1 ~~~D~~-ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~---~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~ 76 (286)
T PF14576_consen 1 TSDDDQ-ILKQIYATHVPDGRKFDVEPLLHLVENILKRATP---IVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYT 76 (286)
T ss_pred CCcHHH-HHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhh---hhcchhhhhhhcchhhhhhhhcccchHhhcCchhHH
Confidence 467777 8999999999999999999999999999999988 34 22223344444555566666566 788999999
Q ss_pred hhhhheeecccC--CCchhhhHHHHHHhhccCcchhHHHHHHHHHHHhhcchhhhhhccCccHHHHHHHHHhCCCCCCCC
Q 046837 90 IHKICCEISCKG--GGDALATTMALFKTLSSYSWDAKMVLSLAAFAVNYGEFWLVAQLCTQNSLANSVAVLKQLPEIPTG 167 (658)
Q Consensus 90 i~~Iscem~ck~--~~~aH~TTm~Il~~Ls~YsWDAK~vLtLAAFAl~YGeFwlL~q~~~~n~LakSlA~Lkqlp~i~~~ 167 (658)
||||||||+||| |+|||+|||+|||+||+|||||||||||||||+||||||||+|+|++||||||||+|||||+|+||
T Consensus 77 i~rIScem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~ 156 (286)
T PF14576_consen 77 IKRISCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEH 156 (286)
T ss_pred HHHHHHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhh
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHhHHHHHHHHHhhHHHhcccCCcccccCCCcchhhHHHHH-HHHHHHHHHHHHhhhcccccccc-c-CCC
Q 046837 168 YDALKPQFDELNNLIGAMLDLTNCIVEFKQLPSRYISNDGKAMSMDQDHY-HAAYWTFRSIVACNSRILSFRGL-Y-TPS 244 (658)
Q Consensus 168 ~~~lk~~~~~ln~LVk~m~dV~~cIie~~~L~~~y~~~dvpal~~a~~~I-~~vYW~I~sivac~~qi~~l~~~-~-~~s 244 (658)
.+++||||+++|+|||+||||++||+||++||++||++|||+|++|++|| ++|||||||+|||++||++|+++ + +.+
T Consensus 157 ~~~lk~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e~~~ 236 (286)
T PF14576_consen 157 SDSLKPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHEITS 236 (286)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999 4 467
Q ss_pred CccchhhchhhhhhhhcccchhHHHHHHHHHHHHHhHhhHHHHHHHHHHhccCCc
Q 046837 245 TTHELELSTLTYKVSNIHVSENLTKQIEFWRQQIDKIRQIKEYNNLVRILGKHNR 299 (658)
Q Consensus 245 ~~~~~eLS~l~~Kl~~I~~~~~L~~~l~~c~~~I~~~~~~e~y~~l~~lf~~~~~ 299 (658)
++++||||+|++||++|+ +|||+||+.|+||||+ +|+|++|+++|++||+
T Consensus 237 ~~~~~eLS~l~~KL~~I~--~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~ 286 (286)
T PF14576_consen 237 TTEAWELSSLAHKLSNIL--SHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI 286 (286)
T ss_pred chhhhHHhhHHHHHHHHH--HHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence 899999999999999999 9999999999999999 8999999999999974
No 2
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=100.00 E-value=4.4e-81 Score=626.83 Aligned_cols=206 Identities=43% Similarity=0.886 Sum_probs=202.4
Q ss_pred hhhHHHhhhcCCCchhhcccCCChhhhhhhcCCcEEEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHH
Q 046837 453 AETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLE 532 (658)
Q Consensus 453 ~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~egK~I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~ 532 (658)
++|+|+||++|+|+|++|+++|||.|.+||+||||||||||+|++|||+||.++++||++|++++||+||||+||+|+||
T Consensus 1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~ 80 (235)
T PF14577_consen 1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR 80 (235)
T ss_pred CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccccccCcchhhHHHHHHHHHHHHHHhcCCC----------------------------Cccceeccccc
Q 046837 533 EISSSITKTESSHIVIDATKMWFFWARLERMLYWKLQHGMG----------------------------KTQETARAKGT 584 (658)
Q Consensus 533 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlesm~~sK~q~~~~----------------------------Gs~~~~~g~G~ 584 (658)
+++++|+.|||||+|+|||+|||||+|||||++||+|+|++ ||+++++|||+
T Consensus 81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~ 160 (235)
T PF14577_consen 81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE 160 (235)
T ss_pred HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence 99999999999999999999999999999999999999775 99999999999
Q ss_pred hHHHHHHhhccchhhhhhccHHHHHHHHhhccC-CCCCccceeccCCCCCCCceeeCCCCCcccceeeeeccCCC
Q 046837 585 AAIDCMEKFHEWQDDALRNGFIQALNNYLQKIH-PGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYHCCPE 658 (658)
Q Consensus 585 ~~~~~l~~f~~Wk~~v~~kGF~~Af~~y~~~~~-~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~v~Y~CCh~ 658 (658)
+|++||++|+.||++|+++||++||+|||++++ +||||||+++|+++|+||++|+|||||||||+||+||||||
T Consensus 161 ~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd 235 (235)
T PF14577_consen 161 TMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD 235 (235)
T ss_pred cHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence 999999999999999999999999999999998 69999999999999999999999999999999999999997
No 3
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.90 E-value=3.8e-24 Score=204.77 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=116.2
Q ss_pred cccCCCCcEEecc-cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhh
Q 046837 314 LVDGETRTTVQIH-VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQ 389 (658)
Q Consensus 314 l~~g~~~~kV~Is-~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~ 389 (658)
.+.+.+|..|.++ .|+||.|+|||||+ |||| +|||+|+++|++++.+ ..|||||||. |+++++|++|+
T Consensus 16 ~l~~~~~~~~~~~~~l~gKvV~lyFsA~-wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~-------D~~~~~~~~y~ 87 (157)
T KOG2501|consen 16 RLRKQDGTEVLASEALQGKVVGLYFSAH-WCPPCRDFTPILKDFYEELKDNAAPFEVVFVSS-------DRDEESLDEYM 87 (157)
T ss_pred eeeccCCccchHhHhhCCcEEEEEEEEE-ECCchhhCCchHHHHHHHHHhcCCceEEEEEec-------CCCHHHHHHHH
Confidence 5667788899999 69999999999999 9975 7899999999999864 7899999997 23888999999
Q ss_pred c--CCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhc
Q 046837 390 K--RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKE 462 (658)
Q Consensus 390 ~--~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~ 462 (658)
. .|||++|||.+ +.++.+.+.|.+++||.|++++|+|.+++.||+.+|..+|. .+-.+++++
T Consensus 88 ~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e 151 (157)
T KOG2501|consen 88 LEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE 151 (157)
T ss_pred HhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence 8 49999999988 78999999999999999999999999999999999999998 556666665
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.82 E-value=7.1e-20 Score=166.65 Aligned_cols=126 Identities=22% Similarity=0.343 Sum_probs=111.6
Q ss_pred ccCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcC
Q 046837 315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKR 391 (658)
Q Consensus 315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~ 391 (658)
+...+|+.|++++++||.|+|+|.+. ||++| +.+.|.++|++++.. .+++||+|+++ ++++.|.++.+.
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~-wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSAS-WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD-------RDEESFNDYFSK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECC-CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC-------CCHHHHHHHHHc
Confidence 44567889999999999999999999 99765 477899999999764 58999999972 366789999999
Q ss_pred CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccC
Q 046837 392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPF 451 (658)
Q Consensus 392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPF 451 (658)
+||+.+||++ ....+.+.+.|++.++|+++++|++|+++..||.+|+..||.+||||
T Consensus 75 ~~~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 75 MPWLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred CCeeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 9999999965 34566788899999999999999999999999999999999999998
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.76 E-value=1.7e-18 Score=164.87 Aligned_cols=117 Identities=17% Similarity=0.305 Sum_probs=101.5
Q ss_pred cEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCC------CCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837 321 TTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKES------KECRIVWLPIVDGSIDRQQALDKFKNLQKRM 392 (658)
Q Consensus 321 ~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~------~~fEIVwIpivD~s~~W~dde~~F~~~~~~M 392 (658)
.+++++.|+||.|+|+|.|. |||+ .|+|.|.++|++++.+ .+||||.|+.+ ++++.+..+.++|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAs-WCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAV-VSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFLKDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECC-CChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHHHHC
Confidence 45567899999999999999 9976 5788999999998643 47999999962 3667799999999
Q ss_pred C--ceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccc
Q 046837 393 P--WYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAF 449 (658)
Q Consensus 393 P--WyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AF 449 (658)
| |+++|+.+ .....+.+.|++.++|++++|||+|+++..|+++.|..+|.+||
T Consensus 88 ~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 88 PKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred CCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 8 99999976 23446778899999999999999999999999999999999997
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.74 E-value=1.4e-17 Score=152.84 Aligned_cols=125 Identities=26% Similarity=0.401 Sum_probs=108.9
Q ss_pred cccCCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhc
Q 046837 314 LVDGETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQK 390 (658)
Q Consensus 314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~ 390 (658)
|+||+ +.|+++.++||.|+|+|.+. ||++ .+.+.|.++|++++.+ .+++||+|++. ++.+.++.+.+
T Consensus 3 ~~~~~--~~v~l~~~~Gk~vll~F~at-wC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d-------~~~~~~~~~~~ 72 (132)
T cd02964 3 LLDGE--GVVPVSALEGKTVGLYFSAS-WCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRD-------RSEESFNEYFS 72 (132)
T ss_pred cccCC--ccccHHHhCCCEEEEEEECC-CCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecC-------CCHHHHHHHHh
Confidence 46777 67999999999999999999 9976 4577899999999755 58999999972 25567778888
Q ss_pred CC-CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHH-hCCccccC
Q 046837 391 RM-PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWI-WGISAFPF 451 (658)
Q Consensus 391 ~M-PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~-wG~~AFPF 451 (658)
++ +|+.+++.+ ......+.+.|++.++|+.+++|++|+++..|+..++.. ||..||||
T Consensus 73 ~~~~~~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 73 EMPPWLAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCCCeEeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 88 899999954 345678889999999999999999999999999999999 99999998
No 7
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.51 E-value=1.3e-13 Score=118.44 Aligned_cols=91 Identities=22% Similarity=0.410 Sum_probs=78.5
Q ss_pred CcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC--CceeecCCCCCcH
Q 046837 330 KKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM--PWYSIQDPAMIQP 405 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M--PWyAVpf~~~i~~ 405 (658)
||.++|+|.+. ||++ .+++.|.++|++++++.+++||+||.+ ++++.++++.+.+ ||+.+|+.+
T Consensus 1 gK~~ll~fwa~-~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~~~~~~~~~~~~~~~---- 68 (95)
T PF13905_consen 1 GKPVLLYFWAS-WCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFLKKNNFPWYNVPFDD---- 68 (95)
T ss_dssp TSEEEEEEE-T-TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHHHTCTTSSEEEETTT----
T ss_pred CCEEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHHHhcCCCceEEeeCc----
Confidence 89999999999 9976 578899999999988899999999982 3777888888888 999999976
Q ss_pred HHHHHHHHhhccCCceEEEEECCCCce
Q 046837 406 AVIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 406 ~~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
.....+.+.|++.++|++++|||+|+|
T Consensus 69 ~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 69 DNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 457788999999999999999999986
No 8
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.72 E-value=7.4e-08 Score=88.17 Aligned_cols=108 Identities=19% Similarity=0.341 Sum_probs=79.5
Q ss_pred CCCcEEecccccCcEEEEEEecCCCCCh---HHHHHHHHHHHHhcCC--CCeeEEEEecccCCCcchhhHHHHHHhhcC-
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDISQ---EEILFLSNMYKDLKES--KECRIVWLPIVDGSIDRQQALDKFKNLQKR- 391 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~---~~~~~L~~iY~~lk~~--~~fEIVwIpivD~s~~W~dde~~F~~~~~~- 391 (658)
.+|+.++++.++||.++|+|.+. ||++ .+++.|.++|++++.+ +++++|+|++++. . |..+..+++.+.
T Consensus 10 ~~g~~~~l~~~~gk~~vl~f~~~-~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~---~-d~~~~~~~~~~~~ 84 (142)
T cd02968 10 QDGRPVTLSDLKGKPVLVYFGYT-HCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE---R-DTPEVLKAYAKAF 84 (142)
T ss_pred CCCCEEchHHhCCCEEEEEEEcC-CCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC---C-CCHHHHHHHHHHh
Confidence 46678999999999999999999 9975 4677899999999765 4899999998431 1 222333333333
Q ss_pred -CCceeecCCCCCcHHHHHHHHHhhccCCc--------------eEEEEECCCCceec
Q 046837 392 -MPWYSIQDPAMIQPAVIKYVKEEWKYSKK--------------AIIVSVDPQGRILN 434 (658)
Q Consensus 392 -MPWyAVpf~~~i~~~~~r~ike~f~~~~i--------------P~LVvL~pqGkv~~ 434 (658)
.+|..+..++ +..+.+.+.|++... |..+|+||+|+++.
T Consensus 85 ~~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~ 138 (142)
T cd02968 85 GPGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR 138 (142)
T ss_pred CCCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence 5788887754 345566777776544 56999999999974
No 9
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.67 E-value=2e-07 Score=84.92 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=74.4
Q ss_pred CCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh--cCCCc
Q 046837 319 TRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ--KRMPW 394 (658)
Q Consensus 319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~--~~MPW 394 (658)
+++.|+++.++||.|+|+|-+. ||++ .+++.|.++|++.+. .+++||.|+..+.+. +++.+...++. ..++|
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~-~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~--~~~~~~~~~~~~~~~~~~ 87 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTY-CCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAF--ERDLANVKSAVLRYGITY 87 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECC-CCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCcccc--ccCHHHHHHHHHHcCCCC
Confidence 3567999999999999999999 9965 567889999999974 679999987622111 11233333322 23454
Q ss_pred eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
..+-- . ...+.+.|++.++|..+++|++|+++..
T Consensus 88 p~~~D-----~--~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 88 PVAND-----N--DYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CEEEC-----C--chHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 43322 2 1244566999999999999999999754
No 10
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.61 E-value=2.3e-07 Score=82.01 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=70.6
Q ss_pred CCCcEEeccccc-CcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837 318 ETRTTVQIHVLK-KKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW 394 (658)
Q Consensus 318 ~~~~kV~Is~L~-gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW 394 (658)
.+|+.+.++.++ ||.|.|+|-+. ||++ .+++.|.++|++.+ .++.|+-|+ | ++.+..+.+.+.++.
T Consensus 8 ~~G~~~~l~~~~~gk~vvl~F~~~-wC~~C~~~~p~l~~~~~~~~--~~~~vi~v~--~------~~~~~~~~~~~~~~~ 76 (114)
T cd02967 8 IDGAPVRIGGISPGRPTLLFFLSP-TCPVCKKLLPVIRSIARAEA--DWLDVVLAS--D------GEKAEHQRFLKKHGL 76 (114)
T ss_pred CCCCEEEcccccCCCeEEEEEECC-CCcchHhHhHHHHHHHHHhc--CCcEEEEEe--C------CCHHHHHHHHHHhCC
Confidence 457789999998 99999999999 9965 56778999888763 457777665 2 223334433333332
Q ss_pred eeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837 395 YSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 395 yAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n 436 (658)
-..|+ ..+. .+.+.|++.++|..+++|++|+++..+
T Consensus 77 ~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 77 EAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 22222 1122 255779999999999999999998654
No 11
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.60 E-value=2.8e-07 Score=78.60 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=75.0
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC--
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM-- 392 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M-- 392 (658)
..+|+.++..+++||.++|+|.+. ||+.| .++.|.++++++. +.++.++.|++.. .+ .+.-+++.+..
T Consensus 6 ~~~g~~~~~~~~~~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~----~~--~~~~~~~~~~~~~ 77 (116)
T cd02966 6 DLDGKPVSLSDLKGKVVLVNFWAS-WCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDD----DD--PAAVKAFLKKYGI 77 (116)
T ss_pred CCCCCEeehHHcCCCEEEEEeecc-cChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCC----CC--HHHHHHHHHHcCC
Confidence 346678999999999999999999 99765 4556888888875 5679999999732 11 33333333333
Q ss_pred CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
||.-+. +. .+.+.+.|++.+.|.++++||+|+++..
T Consensus 78 ~~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 443322 21 3456778999999999999999999753
No 12
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.38 E-value=4.3e-06 Score=74.51 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=74.4
Q ss_pred cCCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837 316 DGETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP 393 (658)
Q Consensus 316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP 393 (658)
...+|+++++++|+||.+.|+|-+..||+. .++..|.+.|++++ ..+..+|.|+..+ .+..++|.+.+. +|
T Consensus 11 ~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~-~~~~~vi~is~d~-----~~~~~~~~~~~~-~~ 83 (124)
T PF00578_consen 11 TDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYK-DKGVQVIGISTDD-----PEEIKQFLEEYG-LP 83 (124)
T ss_dssp ETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH-TTTEEEEEEESSS-----HHHHHHHHHHHT-CS
T ss_pred ECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhc-cceEEeeeccccc-----ccchhhhhhhhc-cc
Confidence 455788899999999996666655548965 45677999999987 4589999999832 234455554443 44
Q ss_pred ceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837 394 WYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN 434 (658)
Q Consensus 394 WyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~ 434 (658)
|-.+.-++ ..+.+.|+.. ..|..+++||+|+++.
T Consensus 84 ~~~~~D~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 84 FPVLSDPD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp SEEEEETT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred cccccCcc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 43333322 2344458888 9999999999999863
No 13
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=1.6e-06 Score=82.07 Aligned_cols=107 Identities=18% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837 315 VDGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM 392 (658)
Q Consensus 315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M 392 (658)
+...+|+.+++++++||.++|+|-+. ||+.| +++.|.+++++++. .++++|-|+..+ +.+...++.+.+
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~-~C~~C~~~~~~l~~~~~~~~~-~~~~vi~i~~d~-------~~~~~~~~~~~~ 116 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGT-WCKPCEKEMPYMNELYPKYKE-KGVEIIAVNVDE-------TELAVKNFVNRY 116 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECC-cCHHHHHHHHHHHHHHHHhhc-CCeEEEEEEcCC-------CHHHHHHHHHHh
Confidence 34556788999999999999999999 99764 56779999998863 468999998732 333444433333
Q ss_pred CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
+ ++|+-..|. .+.+.+.|++.+.|..+++|++|+++..
T Consensus 117 ~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 117 G---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred C---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 2 233211121 2355566999999999999999999843
No 14
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.37 E-value=3.9e-06 Score=80.87 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh------
Q 046837 319 TRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ------ 389 (658)
Q Consensus 319 ~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~------ 389 (658)
+++.+++++++||.|+|+|- +. ||+ +.+++.|.+.|++++ +.++.||.|+.++ .+..+.|.+..
T Consensus 18 ~~~~~~l~~~~Gk~vvl~F~~~~-~c~~C~~~l~~l~~~~~~~~-~~~v~vv~Is~d~-----~~~~~~~~~~~~~~~~~ 90 (173)
T cd03015 18 EFKEISLSDYKGKWVVLFFYPLD-FTFVCPTEIIAFSDRYEEFK-KLNAEVLGVSTDS-----HFSHLAWRNTPRKEGGL 90 (173)
T ss_pred CceEEehHHhCCCEEEEEEECCC-CCCcCHHHHHHHHHHHHHHH-HCCCEEEEEecCC-----HHHHHHHHHhhhhhCCc
Confidence 34789999999999888886 77 984 567888999999996 3679999999732 11334565543
Q ss_pred cCCCceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceeccc
Q 046837 390 KRMPWYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 390 ~~MPWyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~n 436 (658)
..+||-.+.-++ .+..+ .|++. .+|..++|||+|++...+
T Consensus 91 ~~~~f~~l~D~~---~~~~~----~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 91 GKINFPLLADPK---KKISR----DYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred cCcceeEEECCc---hhHHH----HhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 357776665443 23333 47765 678999999999998766
No 15
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.33 E-value=2.7e-06 Score=81.46 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=77.4
Q ss_pred CCCCcEEecccc-cCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc--C
Q 046837 317 GETRTTVQIHVL-KKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK--R 391 (658)
Q Consensus 317 g~~~~kV~Is~L-~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~--~ 391 (658)
..+|..|.++.+ +||.|+|+|=+. |||. .+++.|.++|++.+ +.++++|-|++++....+.|+.+..+.+.+ .
T Consensus 11 ~~~g~~v~l~~~~~~k~~ll~f~~t-~Cp~c~~~~~~l~~l~~~~~-~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~ 88 (171)
T cd02969 11 DTDGKTYSLADFADGKALVVMFICN-HCPYVKAIEDRLNRLAKEYG-AKGVAVVAINSNDIEAYPEDSPENMKAKAKEHG 88 (171)
T ss_pred CCCCCEEeHHHHhCCCEEEEEEECC-CCccHHHHHHHHHHHHHHHh-hCCeEEEEEecCccccccccCHHHHHHHHHHCC
Confidence 345668999998 999999999999 9976 45677999999885 357999999985322222233444444333 3
Q ss_pred CCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 392 MPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 392 MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
.||-.+- |.. +.+.+.|++.+.|..+++||+|+++-.
T Consensus 89 ~~~~~l~-----D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 89 YPFPYLL-----DET--QEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred CCceEEE-----CCc--hHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 4433222 222 245667999999999999999999843
No 16
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.28 E-value=4.3e-06 Score=76.17 Aligned_cols=105 Identities=11% Similarity=0.190 Sum_probs=75.7
Q ss_pred CCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837 317 GETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP 393 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP 393 (658)
+.+|+.+++++++||.++|+|- +. ||+ +.+++.|.+.|++++ ..+++||.|+..+ .+...+|.+-....|
T Consensus 9 ~~~g~~~~l~~~~gk~~ll~f~~~~-~c~~C~~~~~~l~~~~~~~~-~~~~~~i~is~d~-----~~~~~~~~~~~~~~~ 81 (140)
T cd02971 9 ATDGGEVSLSDFKGKWVVLFFYPKD-FTPVCTTELCAFRDLAEEFA-KGGAEVLGVSVDS-----PFSHKAWAEKEGGLN 81 (140)
T ss_pred cCCCcEEehHHhCCCeEEEEEeCCC-CCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCCC-----HHHHHHHHhcccCCC
Confidence 3467789999999998888776 67 885 566788999999995 4579999999732 124455555443566
Q ss_pred ceeecCCCCCcHHHHHHHHHhhccCCce---------EEEEECCCCceecc
Q 046837 394 WYSIQDPAMIQPAVIKYVKEEWKYSKKA---------IIVSVDPQGRILNQ 435 (658)
Q Consensus 394 WyAVpf~~~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~ 435 (658)
|-.+--+ .. .+.+.|++...| ..+++|++|+++..
T Consensus 82 ~~~l~D~-----~~--~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~ 125 (140)
T cd02971 82 FPLLSDP-----DG--EFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYV 125 (140)
T ss_pred ceEEECC-----Ch--HHHHHcCCccccccccCceeEEEEEECCCCcEEEE
Confidence 6655322 22 455668877665 89999999999865
No 17
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.26 E-value=4.2e-06 Score=76.39 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=73.2
Q ss_pred CCcEEecccccCcEEEEEEec-CCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837 319 TRTTVQIHVLKKKHVLLLISR-PDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY 395 (658)
Q Consensus 319 ~~~kV~Is~L~gK~VlLyfSa-~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy 395 (658)
+|+.+.+++++||.++|+|-. . ||| +.+++.|.+.|++++ ..+++||.|+..+ .+.-.+|-+.+ .++|.
T Consensus 12 ~g~~~~l~~~~gk~~ll~f~~~~-~cp~C~~~~~~l~~~~~~~~-~~~~~vv~is~d~-----~~~~~~~~~~~-~~~~~ 83 (140)
T cd03017 12 DGETVSLSDLRGKPVVLYFYPKD-DTPGCTKEACDFRDLYEEFK-ALGAVVIGVSPDS-----VESHAKFAEKY-GLPFP 83 (140)
T ss_pred CCCEEeHHHhCCCcEEEEEeCCC-CCCchHHHHHHHHHHHHHHH-HCCCEEEEEcCCC-----HHHHHHHHHHh-CCCce
Confidence 577899999999998888874 5 875 456778999999986 3579999999731 12334454432 45665
Q ss_pred eecCCCCCcHHHHHHHHHhhccCCc---------eEEEEECCCCceecc
Q 046837 396 SIQDPAMIQPAVIKYVKEEWKYSKK---------AIIVSVDPQGRILNQ 435 (658)
Q Consensus 396 AVpf~~~i~~~~~r~ike~f~~~~i---------P~LVvL~pqGkv~~~ 435 (658)
.+-- .. +.+.+.|++... |..+++|++|+++..
T Consensus 84 ~l~D-----~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 84 LLSD-----PD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred EEEC-----Cc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 4432 22 245667998887 999999999998754
No 18
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.24 E-value=4.6e-06 Score=94.35 Aligned_cols=107 Identities=9% Similarity=0.027 Sum_probs=80.0
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcch-h-hHHHHHHhhcCC
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQ-Q-ALDKFKNLQKRM 392 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~-d-de~~F~~~~~~M 392 (658)
..+|+++.++ +||.|+|.|-|. ||++ .+++.|.++|++.+ ..+++||-|... .++ + +.+.|.++.+.+
T Consensus 45 D~dG~~v~ls--kGKpVvV~FWAT-WCppCk~emP~L~eL~~e~k-~~~v~VI~Vs~~----~~~~e~~~~~~~~~~~~~ 116 (521)
T PRK14018 45 DNRPASVYLK--KDKPTLIKFWAS-WCPLCLSELGETEKWAQDAK-FSSANLITVASP----GFLHEKKDGDFQKWYAGL 116 (521)
T ss_pred cCCCceeecc--CCCEEEEEEEcC-CCHHHHHHHHHHHHHHHHhc-cCCeEEEEEecc----cccccccHHHHHHHHHhC
Confidence 3455567776 899999999999 9976 56889999999876 356999988862 222 2 567788888877
Q ss_pred CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
.|..+|.-- |. -..+.+.|+++++|++++||++|+++..
T Consensus 117 ~y~~~pV~~--D~--~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 117 DYPKLPVLT--DN--GGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred CCcccceec--cc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 765444321 22 2345667999999999999999999854
No 19
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.23 E-value=7.4e-06 Score=74.19 Aligned_cols=99 Identities=15% Similarity=0.023 Sum_probs=69.3
Q ss_pred cEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837 321 TTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ 398 (658)
Q Consensus 321 ~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp 398 (658)
..++.++++||.|+|+|-+. ||++| +.+.|.+++++. +++||-|+..|. .++-++|-.. ...||..+-
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~-~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~----~~~~~~~~~~-~~~~~~~~~ 85 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWAS-WCAPCREEHPVLMALARQG----RVPIYGINYKDN----PENALAWLAR-HGNPYAAVG 85 (127)
T ss_pred ccccHHHcCCCEEEEEEEcC-cCHHHHHHHHHHHHHHHhc----CcEEEEEECCCC----HHHHHHHHHh-cCCCCceEE
Confidence 56888999999999999999 99764 566787776553 488998886331 1122333322 345776655
Q ss_pred CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
... . ..+...|++.++|..++||++|+++..
T Consensus 86 ~D~----~--~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 86 FDP----D--GRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred ECC----c--chHHHhcCCCCCCeEEEECCCceEEEE
Confidence 422 1 235566999999999999999998743
No 20
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.14 E-value=8.7e-06 Score=76.40 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=71.6
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW 394 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW 394 (658)
..+|+.+++++++||.++|+|=+.+||| +.+++.|.+.|++++. .++++|-|++++ .+.-.+|-+-. ..||
T Consensus 17 ~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~-----~~~~~~~~~~~-~~~~ 89 (154)
T PRK09437 17 DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDK-----PEKLSRFAEKE-LLNF 89 (154)
T ss_pred CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCC-----HHHHHHHHHHh-CCCC
Confidence 3456789999999999999997763564 4567789999999863 569999999732 12444454333 4566
Q ss_pred eeecCCCCCcHHHHHHHHHhhccCCc------------eEEEEECCCCceecc
Q 046837 395 YSIQDPAMIQPAVIKYVKEEWKYSKK------------AIIVSVDPQGRILNQ 435 (658)
Q Consensus 395 yAVpf~~~i~~~~~r~ike~f~~~~i------------P~LVvL~pqGkv~~~ 435 (658)
-.+.-++ +.+.+.|++... |..++|||+|+++..
T Consensus 90 ~~l~D~~-------~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 90 TLLSDED-------HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred eEEECCC-------chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 6553222 234445776543 778999999999754
No 21
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.13 E-value=7.8e-06 Score=73.18 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=66.0
Q ss_pred CCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHHHhhcCCCce
Q 046837 319 TRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMPWY 395 (658)
Q Consensus 319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~~~~~~MPWy 395 (658)
+|+.+..+.++||.++|+|-+. ||+.| +.+.|.++|++ ++++-|+.++. +. .-.+|-+.+ .+||.
T Consensus 9 ~g~~~~~~~~~~k~~vl~F~~~-~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~----~~~~~~~~~~~~-~~~~~ 76 (123)
T cd03011 9 DGEQFDLESLSGKPVLVYFWAT-WCPVCRFTSPTVNQLAAD------YPVVSVALRSG----DDGAVARFMQKK-GYGFP 76 (123)
T ss_pred CCCEeeHHHhCCCEEEEEEECC-cChhhhhhChHHHHHHhh------CCEEEEEccCC----CHHHHHHHHHHc-CCCcc
Confidence 4578999999999999999999 99764 46779988876 67888886321 11 223343332 25555
Q ss_pred eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCC
Q 046837 396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQG 430 (658)
Q Consensus 396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqG 430 (658)
.+.-++ ..+.+.|++.+.|+++++|++|
T Consensus 77 ~~~d~~-------~~~~~~~~i~~~P~~~vid~~g 104 (123)
T cd03011 77 VINDPD-------GVISARWGVSVTPAIVIVDPGG 104 (123)
T ss_pred EEECCC-------cHHHHhCCCCcccEEEEEcCCC
Confidence 443221 2456679999999999999999
No 22
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.13 E-value=2.4e-05 Score=72.37 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=74.7
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW 394 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW 394 (658)
..+|+.++++.++||.|+|.|-+.-|||+| +++.|.++|++.+ +.++++|.|...+ +....+|-+- ...+|
T Consensus 15 ~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~-~~~v~~v~v~~~~-----~~~~~~~~~~-~~~~~ 87 (146)
T PF08534_consen 15 DLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK-DKGVDVVGVSSDD-----DPPVREFLKK-YGINF 87 (146)
T ss_dssp ETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH-TTTCEEEEEEESS-----SHHHHHHHHH-TTTTS
T ss_pred cCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc-cCceEEEEecccC-----CHHHHHHHHh-hCCCc
Confidence 368889999999999955555443399764 5778999988865 4579999999853 1244445433 45555
Q ss_pred eeecCCCCCcHHHHHHHHHhhccC---------CceEEEEECCCCceeccc
Q 046837 395 YSIQDPAMIQPAVIKYVKEEWKYS---------KKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 395 yAVpf~~~i~~~~~r~ike~f~~~---------~iP~LVvL~pqGkv~~~n 436 (658)
..+--++ ..+.+.|++. +.|..+++|++|+|+...
T Consensus 88 ~~~~D~~-------~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 88 PVLSDPD-------GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp EEEEETT-------SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred eEEechH-------HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 5544332 2344558887 999999999999998654
No 23
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.13 E-value=1.2e-05 Score=74.26 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=71.5
Q ss_pred CCCCcEEecccccC-cEEEEEE-ecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCC
Q 046837 317 GETRTTVQIHVLKK-KHVLLLI-SRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRM 392 (658)
Q Consensus 317 g~~~~kV~Is~L~g-K~VlLyf-Sa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~M 392 (658)
..+|+.+++++++| |.+.|+| .+. ||+. .+++.|.++|++++ +.++.+|.|+..+ .+..++|-+-+ ..
T Consensus 14 ~~~g~~v~l~~~~g~k~~vl~f~~~~-~c~~C~~~~~~l~~~~~~~~-~~~v~vi~vs~d~-----~~~~~~~~~~~-~~ 85 (149)
T cd03018 14 DQNGQEVRLSEFRGRKPVVLVFFPLA-FTPVCTKELCALRDSLELFE-AAGAEVLGISVDS-----PFSLRAWAEEN-GL 85 (149)
T ss_pred CCCCCEEeHHHHcCCCeEEEEEeCCC-CCccHHHHHHHHHHHHHHHH-hCCCEEEEecCCC-----HHHHHHHHHhc-CC
Confidence 34678899999999 8766655 588 9965 56778999999986 3578999999632 12444554432 35
Q ss_pred CceeecCCCCCcHHHHHHHHHhhccC----Cce--EEEEECCCCceecc
Q 046837 393 PWYSIQDPAMIQPAVIKYVKEEWKYS----KKA--IIVSVDPQGRILNQ 435 (658)
Q Consensus 393 PWyAVpf~~~i~~~~~r~ike~f~~~----~iP--~LVvL~pqGkv~~~ 435 (658)
||..+- |....+.+.+.|++. ++| ..+++|++|+++-.
T Consensus 86 ~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 86 TFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred CceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 554442 211123455567776 433 89999999998765
No 24
>PLN02412 probable glutathione peroxidase
Probab=98.06 E-value=3.7e-05 Score=74.29 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=80.1
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCC-Ccc-h-h-hHHHH-HHhh
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGS-IDR-Q-Q-ALDKF-KNLQ 389 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s-~~W-~-d-de~~F-~~~~ 389 (658)
..+|+++.++.++||.|+|+|-+. ||+++ +.+.|.++|++.+. .+++||=||..+.. .+. + + -.+.| +.+.
T Consensus 16 d~~G~~v~l~~~~gk~vlv~f~a~-~C~~c~~e~~~l~~l~~~~~~-~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (167)
T PLN02412 16 DIGGNDVSLNQYKGKVLLIVNVAS-KCGLTDSNYKELNVLYEKYKE-QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFK 93 (167)
T ss_pred CCCCCEEeHHHhCCCEEEEEEeCC-CCCChHHHHHHHHHHHHHHhh-CCcEEEEecccccccCCCCCHHHHHHHHHHccC
Confidence 356778999999999999999999 99764 67889999999974 46999999974210 011 1 1 23445 5555
Q ss_pred cCCCceee--cCCCCCcHHHHHHHHHh----hc--cCCceEEEEECCCCceeccc
Q 046837 390 KRMPWYSI--QDPAMIQPAVIKYVKEE----WK--YSKKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 390 ~~MPWyAV--pf~~~i~~~~~r~ike~----f~--~~~iP~LVvL~pqGkv~~~n 436 (658)
-+.|+++- +-... .....++++.. +. +...|+-.++|++|+++..-
T Consensus 94 ~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 94 AEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred CCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 66787752 22111 22345555542 22 56679999999999998654
No 25
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.03 E-value=2.5e-05 Score=76.49 Aligned_cols=99 Identities=17% Similarity=0.086 Sum_probs=67.7
Q ss_pred CcEEecccc-cCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCcee
Q 046837 320 RTTVQIHVL-KKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYS 396 (658)
Q Consensus 320 ~~kV~Is~L-~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyA 396 (658)
|+.+..+.+ +||.|+|+|-+. ||++ .+.+.|.++++ .+++||-|+..|. .++-.+|-+- ..+||..
T Consensus 57 g~~~~~~~~~~gk~vvv~Fwat-wC~~C~~e~p~l~~l~~-----~~~~vi~v~~~~~----~~~~~~~~~~-~~~~~~~ 125 (185)
T PRK15412 57 GQFYQADVLTQGKPVLLNVWAT-WCPTCRAEHQYLNQLSA-----QGIRVVGMNYKDD----RQKAISWLKE-LGNPYAL 125 (185)
T ss_pred CccccHHHhcCCCEEEEEEECC-CCHHHHHHHHHHHHHHH-----cCCEEEEEECCCC----HHHHHHHHHH-cCCCCce
Confidence 455666666 799999999999 9976 56777877754 3689999986330 0133344332 2467765
Q ss_pred ecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 397 IQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 397 Vpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
+.+.. . ..+.+.|++.++|..+++|++|++...
T Consensus 126 ~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 126 SLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred EEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEE
Confidence 44422 1 124456999999999999999998754
No 26
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.00 E-value=4.3e-05 Score=75.26 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCcEEecc--cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhcCC
Q 046837 318 ETRTTVQIH--VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQKRM 392 (658)
Q Consensus 318 ~~~~kV~Is--~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~~M 392 (658)
.+|+.+.++ .++||.|.|+|.+. |||+ .+.+.+.++|++. ++.+++|+. | + .++.++|-. +.-+.
T Consensus 60 ~~G~~v~l~~~~~~gk~vvl~F~at-wCp~C~~~lp~l~~~~~~~----~~~vv~Is~-~---~-~~~~~~~~~~~~~~~ 129 (189)
T TIGR02661 60 FDGEPVRIGGSIAPGRPTLLMFTAP-SCPVCDKLFPIIKSIARAE----ETDVVMISD-G---T-PAEHRRFLKDHELGG 129 (189)
T ss_pred CCCCEEeccchhcCCCEEEEEEECC-CChhHHHHHHHHHHHHHhc----CCcEEEEeC-C---C-HHHHHHHHHhcCCCc
Confidence 456779984 57999999999999 9975 4577888888653 578999984 2 1 123344433 32234
Q ss_pred CceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837 393 PWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN 434 (658)
Q Consensus 393 PWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 434 (658)
|.|. . + ..+.+.|++.++|..+++|++|++..
T Consensus 130 ~~~~--~----~----~~i~~~y~v~~~P~~~lID~~G~I~~ 161 (189)
T TIGR02661 130 ERYV--V----S----AEIGMAFQVGKIPYGVLLDQDGKIRA 161 (189)
T ss_pred ceee--c----h----hHHHHhccCCccceEEEECCCCeEEE
Confidence 4443 1 1 23445699999999999999999985
No 27
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.98 E-value=3.7e-06 Score=81.69 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=41.5
Q ss_pred cCCcEEEEEccCCchHH---HHHHHHHHHHHhhc---CCceeEEEeeccChhhHHHHh
Q 046837 483 KEERFICLYGGNDEAWI---RKFRNSAKDVASKA---QINWGMAYVGKKNAKKRLEEI 534 (658)
Q Consensus 483 ~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~---~~~~E~v~Vgkdn~~e~v~~~ 534 (658)
.+||.|+||||+ +|| |+||+.+++++++. +.+||+||||+|...+....-
T Consensus 31 l~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y 86 (157)
T KOG2501|consen 31 LQGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEY 86 (157)
T ss_pred hCCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHH
Confidence 499999999999 777 99999999998853 557999999999766554433
No 28
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.98 E-value=8.6e-05 Score=72.73 Aligned_cols=116 Identities=13% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCCCcEEecccccCcEE-EEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEeccc--CCCcchh-hHHHHHHhhc
Q 046837 317 GETRTTVQIHVLKKKHV-LLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVD--GSIDRQQ-ALDKFKNLQK 390 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~V-lLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD--~s~~W~d-de~~F~~~~~ 390 (658)
..+|+.|++++++||.| ++++-|. |||+ .+.+.|.++|++.+. .+++||-||..+ ...+++. +-.+|-.-..
T Consensus 27 d~~G~~vsLs~~~Gk~vvlv~n~at-wCp~C~~e~p~l~~l~~~~~~-~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~ 104 (183)
T PTZ00256 27 DIDGQLVQLSKFKGKKAIIVVNVAC-KCGLTSDHYTQLVELYKQYKS-QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKF 104 (183)
T ss_pred cCCCCEEeHHHhCCCcEEEEEEECC-CCCchHHHHHHHHHHHHHHhh-CCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 45778899999999965 4455788 9975 578899999999863 469999999631 1112322 3334421111
Q ss_pred CCCceee----cCCCCCcHHHHHHHHHhh--------ccCCceE---EEEECCCCceecc
Q 046837 391 RMPWYSI----QDPAMIQPAVIKYVKEEW--------KYSKKAI---IVSVDPQGRILNQ 435 (658)
Q Consensus 391 ~MPWyAV----pf~~~i~~~~~r~ike~f--------~~~~iP~---LVvL~pqGkv~~~ 435 (658)
..++..+ +-+. ...+..+++++.. .+.++|. .+++|++|+++..
T Consensus 105 ~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 105 NVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred CCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 3332222 1111 1134666777765 4668995 6999999999864
No 29
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.98 E-value=6.9e-05 Score=70.74 Aligned_cols=111 Identities=12% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEec--ccCCCcch--hhHHHHHHhhcC
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPI--VDGSIDRQ--QALDKFKNLQKR 391 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpi--vD~s~~W~--dde~~F~~~~~~ 391 (658)
.+|+.+.+++++||.|+|+|-+. |||+ .+.+.|.++|++.+ ..+++||-||. +..+ +-+ +.-.+|-+-...
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as-~C~~c~~~~~~l~~l~~~~~-~~~~~v~~i~~~~~~~~-~~d~~~~~~~f~~~~~~ 86 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVAS-ECGFTDQNYRALQELHRELG-PSHFNVLAFPCNQFGES-EPDSSKEIESFARRNYG 86 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCC-CCCchhhhHHHHHHHHHHHh-hCCeEEEEEeccccccC-CCCCHHHHHHHHHHhcC
Confidence 46778999999999999999999 9976 57888999999997 34699999985 1100 001 133445432123
Q ss_pred CCceeec-----CCCCCcHHHHHHHHHhhccCCceE----EEEECCCCceecc
Q 046837 392 MPWYSIQ-----DPAMIQPAVIKYVKEEWKYSKKAI----IVSVDPQGRILNQ 435 (658)
Q Consensus 392 MPWyAVp-----f~~~i~~~~~r~ike~f~~~~iP~----LVvL~pqGkv~~~ 435 (658)
.++..+. -++ -....+++.+ +..+.|. ..++|++|+++..
T Consensus 87 ~~fp~~~d~~~~~~~--~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 87 VTFPMFSKIKILGSE--AEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred CCCCccceEecCCCC--CCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence 4433221 111 0123455443 3456897 9999999999753
No 30
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.96 E-value=7e-05 Score=77.19 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=75.0
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcc--h-hhHHHHH--Hhh
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDR--Q-QALDKFK--NLQ 389 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W--~-dde~~F~--~~~ 389 (658)
..+|+.|.+++++||.|+|.|-+. ||++ .+.+.|.++|++.+. .+++||-|+..+....- + ++-.+|- .+.
T Consensus 86 d~~G~~vsLsd~kGK~vvl~FwAs-wCp~c~~e~p~L~~L~~~~~~-~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g 163 (236)
T PLN02399 86 DIDGKDVALSKFKGKVLLIVNVAS-KCGLTSSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK 163 (236)
T ss_pred CCCCCEEeHHHhCCCeEEEEEEcC-CCcchHHHHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999999 9976 478899999999864 46999999974210000 1 1334452 233
Q ss_pred cCCCceeecCCC-CCcHHHHHHHHHhhc------cCCceEEEEECCCCceecc
Q 046837 390 KRMPWYSIQDPA-MIQPAVIKYVKEEWK------YSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 390 ~~MPWyAVpf~~-~i~~~~~r~ike~f~------~~~iP~LVvL~pqGkv~~~ 435 (658)
-..|-++=.-.+ ..-.+..++++..+. ++..|+-+++|++|+++..
T Consensus 164 ~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 164 AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 333432100000 001123455544332 3567999999999999864
No 31
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.93 E-value=2.9e-05 Score=73.33 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCCcEEecccccCcEEEEEEecCCCCC-hHHHHHHHHHHHHhcCCCCeeEEEEec
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDIS-QEEILFLSNMYKDLKESKECRIVWLPI 371 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~-~~~~~~L~~iY~~lk~~~~fEIVwIpi 371 (658)
.+|+.++++.++||.|+|+|=+. ||| ..+++.|.++|++.+. .+++||-|++
T Consensus 10 ~~G~~v~l~~~~Gk~vvl~fwat-wC~C~~e~p~l~~l~~~~~~-~~~~vv~v~~ 62 (152)
T cd00340 10 IDGEPVSLSKYKGKVLLIVNVAS-KCGFTPQYEGLEALYEKYKD-RGLVVLGFPC 62 (152)
T ss_pred CCCCEEeHHHhCCCEEEEEEEcC-CCCchHHHHHHHHHHHHhcC-CCEEEEEecc
Confidence 46778999999999999999999 996 5577889999999863 4699999986
No 32
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.93 E-value=4.1e-05 Score=74.05 Aligned_cols=97 Identities=21% Similarity=0.108 Sum_probs=65.4
Q ss_pred EEecccc-cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837 322 TVQIHVL-KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ 398 (658)
Q Consensus 322 kV~Is~L-~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp 398 (658)
.+..+.+ +||.|+|+|.+. ||++| +.+.|.++++ .+++||.|+..|. .++..+|-+- ..+||..+.
T Consensus 54 ~~~~~~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~-----~~~~vi~V~~~~~----~~~~~~~~~~-~~~~f~~v~ 122 (173)
T TIGR00385 54 AYTPEAFIQGKPVLLNVWAS-WCPPCRAEHPYLNELAK-----DGLPIVGVDYKDQ----SQNALKFLKE-LGNPYQAIL 122 (173)
T ss_pred ccCHHHhcCCCEEEEEEECC-cCHHHHHHHHHHHHHHH-----cCCEEEEEECCCC----hHHHHHHHHH-cCCCCceEE
Confidence 4555565 799999999999 99764 5666776654 2599999986321 0122344322 246776554
Q ss_pred CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
+.. . ..+.+.|++.+.|..+++|++|+++..
T Consensus 123 ~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 123 IDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred ECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 422 1 234556999999999999999998754
No 33
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.92 E-value=6e-05 Score=74.89 Aligned_cols=110 Identities=12% Similarity=0.127 Sum_probs=76.6
Q ss_pred cccCCCCcEEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc
Q 046837 314 LVDGETRTTVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK 390 (658)
Q Consensus 314 l~~g~~~~kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~ 390 (658)
+++| ....+.+++++||.|.|+|= +. ||| +.|+..|.+.|++++ +.+++||-||.++ .+..+.|-+-..
T Consensus 16 ~~~g-~~~~v~L~d~~Gk~vvL~F~P~~-~~p~C~~el~~l~~~~~~f~-~~g~~vigIS~D~-----~~~~~a~~~~~~ 87 (187)
T PRK10382 16 FKNG-EFIEVTEKDTEGRWSVFFFYPAD-FTFVCPTELGDVADHYEELQ-KLGVDVYSVSTDT-----HFTHKAWHSSSE 87 (187)
T ss_pred EeCC-cceEEEHHHhCCCeEEEEEECCC-CCCcCHHHHHHHHHHHHHHH-hCCCEEEEEeCCC-----HHHHHHHHHhhc
Confidence 4544 45678889999999888877 77 884 567888999999986 4569999999732 125666764332
Q ss_pred CCCceeecCCCCCcHHHHHHHHHhhcc----CCc--eEEEEECCCCceecc
Q 046837 391 RMPWYSIQDPAMIQPAVIKYVKEEWKY----SKK--AIIVSVDPQGRILNQ 435 (658)
Q Consensus 391 ~MPWyAVpf~~~i~~~~~r~ike~f~~----~~i--P~LVvL~pqGkv~~~ 435 (658)
.+ ..+|||=+.|. -+.+.+.|++ .+. |..+|+||+|++...
T Consensus 88 ~~--~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 88 TI--AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred cc--cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 22 23444433332 3456666887 466 999999999998654
No 34
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.91 E-value=4.7e-05 Score=74.91 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=70.7
Q ss_pred EEecccccCcEEEEEEe-cCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhh---cCCCce
Q 046837 322 TVQIHVLKKKHVLLLIS-RPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQ---KRMPWY 395 (658)
Q Consensus 322 kV~Is~L~gK~VlLyfS-a~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~---~~MPWy 395 (658)
.++.++++||.|+|+|= +. ||+ +.+++.|.+.|++++ ..+++||.||.++ .+..+.|.... ..+|+.
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~-~cp~C~~el~~l~~~~~~~~-~~gv~vi~VS~D~-----~~~~~~~~~~~~~~~~l~fp 95 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPAD-FTFVCPTELEDLADKYAELK-KLGVEVYSVSTDT-----HFVHKAWHDTSEAIGKITYP 95 (187)
T ss_pred EecHHHHCCCEEEEEEECCC-cCCcCHHHHHHHHHHHHHHH-hcCCcEEEEeCCC-----HHHHHHHHhhhhhccCccee
Confidence 57888999999999997 77 985 567888999999996 4479999999732 12445554322 345543
Q ss_pred eecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceeccc
Q 046837 396 SIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 396 AVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~n 436 (658)
.+- |. ...+.+.|++. ..|..+++|++|++....
T Consensus 96 lls-----D~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 96 MLG-----DP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred EEE-----CC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 332 22 23445557775 469999999999997653
No 35
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.88 E-value=6.8e-05 Score=69.27 Aligned_cols=105 Identities=6% Similarity=0.015 Sum_probs=69.1
Q ss_pred CCCCcEEecccccCcEEEEEEecCCC-CC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDD-IS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP 393 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~-~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP 393 (658)
..+|..+++++++||.|.|+|=+. | || ..+++.|.+.|++. .+++||-|+.++ .+...+|.+-. .
T Consensus 13 ~~~g~~~~l~~~~gk~vvl~f~~~-~~c~~C~~e~~~l~~~~~~~---~~~~vi~Is~d~-----~~~~~~~~~~~---~ 80 (143)
T cd03014 13 TSDLSEVSLADFAGKVKVISVFPS-IDTPVCATQTKRFNKEAAKL---DNTVVLTISADL-----PFAQKRWCGAE---G 80 (143)
T ss_pred CCCCcEEeHHHhCCCeEEEEEEcC-CCCCcCHHHHHHHHHHHHhc---CCCEEEEEECCC-----HHHHHHHHHhc---C
Confidence 346678999999999999999888 6 54 56788899999996 368999998622 11344554433 2
Q ss_pred ceeecCCCCCcHHHHHHHHHhhccCC------ceEEEEECCCCceeccc
Q 046837 394 WYSIQDPAMIQPAVIKYVKEEWKYSK------KAIIVSVDPQGRILNQN 436 (658)
Q Consensus 394 WyAVpf~~~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~~~n 436 (658)
...+|.-+ |.. .+.+.+.|++.. .|...++|++|+++...
T Consensus 81 ~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 81 VDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred CCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 21122111 111 123344466643 79999999999997654
No 36
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.83 E-value=8.7e-05 Score=90.48 Aligned_cols=103 Identities=19% Similarity=0.182 Sum_probs=74.3
Q ss_pred CCcEEec-ccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcch-h-hHH---HHHHhhc
Q 046837 319 TRTTVQI-HVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQ-Q-ALD---KFKNLQK 390 (658)
Q Consensus 319 ~~~kV~I-s~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~-d-de~---~F~~~~~ 390 (658)
+|..+.+ ++++||.|+|.|.|. ||++ .+.|.|.++|++.+ +.+|+||-|+.++ .+ + +.+ +|- ...
T Consensus 408 ~g~~~~l~~~lkGK~vll~FWAs-WC~pC~~e~P~L~~l~~~y~-~~~~~vvgV~~~~----~D~~~~~~~~~~~~-~~~ 480 (1057)
T PLN02919 408 NTAPLQFRRDLKGKVVILDFWTY-CCINCMHVLPDLEFLEKKYK-DQPFTVVGVHSAK----FDNEKDLEAIRNAV-LRY 480 (1057)
T ss_pred CCccccchhhcCCCEEEEEEECC-cChhHHhHhHHHHHHHHHcC-CCCeEEEEEeccc----ccccccHHHHHHHH-HHh
Confidence 3456776 589999999999999 9976 56889999999986 3569999998531 11 1 222 233 245
Q ss_pred CCCceeecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 391 RMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 391 ~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
.++|..+.-.+ . .+-+.|+++++|+.+++|++|+++..
T Consensus 481 ~i~~pvv~D~~---~----~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 481 NISHPVVNDGD---M----YLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred CCCccEEECCc---h----HHHHhcCCCccceEEEECCCCeEEEE
Confidence 67776554322 2 34456999999999999999999743
No 37
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.83 E-value=8.2e-05 Score=68.18 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCCcEEeccccc-Cc-EEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837 318 ETRTTVQIHVLK-KK-HVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP 393 (658)
Q Consensus 318 ~~~~kV~Is~L~-gK-~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP 393 (658)
.+|+.++++++. +| .|++||-+. |||. .+++.|.+.|++++ ..+++||-|+..+ .+....|.+- ...|
T Consensus 10 ~~g~~~~l~~~~~~~~~vl~f~~~~-~Cp~C~~~~~~l~~~~~~~~-~~~v~vv~V~~~~-----~~~~~~~~~~-~~~~ 81 (149)
T cd02970 10 AGGETVTLSALLGEGPVVVVFYRGF-GCPFCREYLRALSKLLPELD-ALGVELVAVGPES-----PEKLEAFDKG-KFLP 81 (149)
T ss_pred CCCCEEchHHHhcCCCEEEEEECCC-CChhHHHHHHHHHHHHHHHH-hcCeEEEEEeCCC-----HHHHHHHHHh-cCCC
Confidence 467789999875 34 456666788 9975 56778999999986 4569999999732 1222234332 1233
Q ss_pred ceeecCCCCCcHHHHHHHHHhhccC-----------------------------CceEEEEECCCCceec
Q 046837 394 WYSIQDPAMIQPAVIKYVKEEWKYS-----------------------------KKAIIVSVDPQGRILN 434 (658)
Q Consensus 394 WyAVpf~~~i~~~~~r~ike~f~~~-----------------------------~iP~LVvL~pqGkv~~ 434 (658)
|..+- |.. +.+.+.|++. ..|..+|+|++|++.-
T Consensus 82 ~p~~~-----D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 82 FPVYA-----DPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred CeEEE-----CCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 33222 322 2344557773 7999999999999864
No 38
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.81 E-value=0.0002 Score=71.60 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=73.8
Q ss_pred CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccC-CCcchh--hHHHHHHhhcCC
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDG-SIDRQQ--ALDKFKNLQKRM 392 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~-s~~W~d--de~~F~~~~~~M 392 (658)
.+|+.|.++.++||.|+|.|=|. ||++ .+.+.|.++|++.+ ..+++||-||+.+. ..+.++ +-.+|-. ...+
T Consensus 27 ~~G~~vsL~~~kGkvvlv~fwAs-wC~~C~~e~p~L~~l~~~~~-~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-~~~~ 103 (199)
T PTZ00056 27 LEGTTVPMSSLKNKVLMITNSAS-KCGLTKKHVDQMNRLHSVFN-PLGLEILAFPTSQFLNQEFPNTKDIRKFND-KNKI 103 (199)
T ss_pred CCCCEEeHHHhCCCEEEEEEECC-CCCChHHHHHHHHHHHHHHh-cCceEEEEecchhccCCCCCCHHHHHHHHH-HcCC
Confidence 45778999999999999999999 9965 57889999999986 34699999997320 001112 3444543 2345
Q ss_pred Cceeec-----CCCCCcHHHHHHHHH----hhccCCc-------eEEEEECCCCceec
Q 046837 393 PWYSIQ-----DPAMIQPAVIKYVKE----EWKYSKK-------AIIVSVDPQGRILN 434 (658)
Q Consensus 393 PWyAVp-----f~~~i~~~~~r~ike----~f~~~~i-------P~LVvL~pqGkv~~ 434 (658)
+|..+- -++ ..++.+++++ .++..+. |+-+++|++|+++.
T Consensus 104 ~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~ 159 (199)
T PTZ00056 104 KYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVA 159 (199)
T ss_pred CceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEE
Confidence 654431 111 2245666653 2333333 37899999999984
No 39
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.80 E-value=0.00015 Score=71.86 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=70.4
Q ss_pred CCCcEEecccccCcEEEEEEecCCCC--ChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhcCCCc
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDI--SQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQKRMPW 394 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~--~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~~MPW 394 (658)
.+++++.+++++||.|+|+|-..+|| |+.++..|.+.|++++. .+++||.||.++ .+....+.. .....-.
T Consensus 24 ~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~-~g~~vv~IS~d~-----~~~~~~~~~~~~~~~~~ 97 (199)
T PTZ00253 24 GSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE-LNCEVLACSMDS-----EYAHLQWTLQERKKGGL 97 (199)
T ss_pred CCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH-cCCEEEEEeCCC-----HHHHHHHHhChHhhCCc
Confidence 45568999999999999999875366 45667789999999864 589999999842 112222221 1111001
Q ss_pred eeecCCCCCcHHHHHHHHHhhccC----C--ceEEEEECCCCceec
Q 046837 395 YSIQDPAMIQPAVIKYVKEEWKYS----K--KAIIVSVDPQGRILN 434 (658)
Q Consensus 395 yAVpf~~~i~~~~~r~ike~f~~~----~--iP~LVvL~pqGkv~~ 434 (658)
-.++||-..|. .+.+.+.|++. + .|..+||||+|++..
T Consensus 98 ~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 98 GTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred cccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence 12334333332 34455567764 3 589999999999775
No 40
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.65 E-value=0.0006 Score=65.88 Aligned_cols=104 Identities=8% Similarity=0.047 Sum_probs=72.6
Q ss_pred CCCcEEecccccCcEEEEEEecCCC-CC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCc
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDD-IS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPW 394 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~-~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPW 394 (658)
.+|+.|++++++||.|.|+|=+. | |+ ..+++.|.+.|+++ .+++||=||.++ ....++|.+-. .+|-
T Consensus 32 ~~g~~v~l~~~~Gk~vvl~f~~s-~~cp~C~~e~~~l~~~~~~~---~~~~vv~vs~D~-----~~~~~~f~~~~-~~~~ 101 (167)
T PRK00522 32 NDLSDVSLADFAGKRKVLNIFPS-IDTGVCATSVRKFNQEAAEL---DNTVVLCISADL-----PFAQKRFCGAE-GLEN 101 (167)
T ss_pred CCCcEEehHHhCCCEEEEEEEcC-CCCCccHHHHHHHHHHHHHc---CCcEEEEEeCCC-----HHHHHHHHHhC-CCCC
Confidence 46778999999999999999999 6 74 56788899999997 379999999732 12556676543 2331
Q ss_pred eeecCCCCCcHHHHHHHHHhhccCCce---------EEEEECCCCceeccc
Q 046837 395 YSIQDPAMIQPAVIKYVKEEWKYSKKA---------IIVSVDPQGRILNQN 436 (658)
Q Consensus 395 yAVpf~~~i~~~~~r~ike~f~~~~iP---------~LVvL~pqGkv~~~n 436 (658)
+.+-. |.. -+.+.+.|++.+.| ...++|++|+++...
T Consensus 102 ~~~ls----D~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 102 VITLS----DFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred ceEee----cCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 11111 211 22344568887777 999999999997654
No 41
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.63 E-value=0.00033 Score=68.41 Aligned_cols=110 Identities=24% Similarity=0.358 Sum_probs=78.1
Q ss_pred cccCCCCcEEecccccCcEEEEEEecCCCCC---hHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchh---hHHHHH
Q 046837 314 LVDGETRTTVQIHVLKKKHVLLLISRPDDIS---QEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQ---ALDKFK 386 (658)
Q Consensus 314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~---~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~d---de~~F~ 386 (658)
|.+. +|+.|..++|+||.++++|.-. -|| |-.+..|.++.+++.+ +.++++|+||++ |..| .-++|-
T Consensus 37 L~d~-~G~~~~~~~~~Gk~~lv~F~yT-~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 37 LTDQ-DGKTVTLDDLKGKWVLVFFGYT-RCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTPEVLKKYA 110 (174)
T ss_dssp EEET-TSSEEEGGGGTTSEEEEEEE-T-TSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-HHHHHHHH
T ss_pred EEcC-CCCEecHHHhCCCeEEEEEEEc-CCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCHHHHHHHH
Confidence 5554 6778999999999999999988 885 4456679999999975 479999999984 3334 345565
Q ss_pred HhhcCCCceeecCCCCCcHHHHHHHHHhhccC----------------CceEEEEECCCCceec
Q 046837 387 NLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYS----------------KKAIIVSVDPQGRILN 434 (658)
Q Consensus 387 ~~~~~MPWyAVpf~~~i~~~~~r~ike~f~~~----------------~iP~LVvL~pqGkv~~ 434 (658)
+.+. -.|..+-+ +.+.++.+.+.|++. .-..+.++||+|++..
T Consensus 111 ~~~~-~~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 111 KKFG-PDFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp HCHT-TTCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred HhcC-CCcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 5553 35666665 345667677776643 2347889999999864
No 42
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.62 E-value=0.00024 Score=70.96 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=68.3
Q ss_pred EEecccccCcEEEE-EEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHH----HHHhhc-CCC
Q 046837 322 TVQIHVLKKKHVLL-LISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDK----FKNLQK-RMP 393 (658)
Q Consensus 322 kV~Is~L~gK~VlL-yfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~----F~~~~~-~MP 393 (658)
.+++++++||.|.| +|-+. ||| +.|+..|.+.|++++ +.+++||-||.++ .+.... |.+-.. .+|
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~-~cp~C~~El~~l~~~~~~f~-~~~~~vi~vS~D~-----~~~~~~w~~~~~~~~g~~~~ 91 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPAD-FTPVCTTEFIAFSRRYEDFK-KLGVELVGLSVDS-----IYSHIAWLRDIEERFGIKIP 91 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCC-CCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCC-----HHHHHHHHHhHHHhcCCCce
Confidence 59999999998776 57888 985 567888999999997 4579999999732 112222 322222 345
Q ss_pred ceeecCCCCCcHHHHHHHHHhhccC------CceEEEEECCCCceec
Q 046837 394 WYSIQDPAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILN 434 (658)
Q Consensus 394 WyAVpf~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~ 434 (658)
|..+--+ . +.+.+.|++. ..|..+++||+|++..
T Consensus 92 fPll~D~-----~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~ 131 (202)
T PRK13190 92 FPVIADI-----D--KELAREYNLIDENSGATVRGVFIIDPNQIVRW 131 (202)
T ss_pred EEEEECC-----C--hHHHHHcCCccccCCcEEeEEEEECCCCEEEE
Confidence 4443332 2 3455568874 4899999999999874
No 43
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.42 E-value=0.00064 Score=71.20 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=90.1
Q ss_pred HHHHHHhHhhHHHHHHHHHHhccCCcchHHHHHHHhccC--c--c---ccCCCCcEEecccc-cCcEEEEEEe-cCCCCC
Q 046837 274 WRQQIDKIRQIKEYNNLVRILGKHNRDNIKVLRALIYAE--D--L---VDGETRTTVQIHVL-KKKHVLLLIS-RPDDIS 344 (658)
Q Consensus 274 c~~~I~~~~~~e~y~~l~~lf~~~~~dn~~vlk~Li~~k--d--l---~~g~~~~kV~Is~L-~gK~VlLyfS-a~~~~~ 344 (658)
|-+-.++.. .=..++-.+.|.+..--+.++-+.++-.+ | + .+| ++..++++++ +||.|.|||= +. |||
T Consensus 36 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vGd~aPdF~l~~~~~g-~~~~vsLsd~~kgk~vVL~FyPa~-ftp 112 (261)
T PTZ00137 36 CFKSVDRIS-SLKSVNGVRNYSTSEGLCNTVTSSLVGKLMPSFKGTALLND-DLVQFNSSDYFKDSYGLLVFYPLD-FTF 112 (261)
T ss_pred hccchhhHH-HHHHHHHHHhccCCcccccccccccCCCCCCCCEeecccCC-CceEEeHHHHcCCCeEEEEEECCC-CCC
Confidence 555554421 11234566677665333444444444322 2 2 233 3346899997 8988777766 66 985
Q ss_pred --hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHh-h-----cCCCceeecCCCCCcHHHHHHHHHhhc
Q 046837 345 --QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNL-Q-----KRMPWYSIQDPAMIQPAVIKYVKEEWK 416 (658)
Q Consensus 345 --~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~-~-----~~MPWyAVpf~~~i~~~~~r~ike~f~ 416 (658)
+.|++.|.+.|++++ +.++|||=||+++ . ...+.|.+. . ..+|+.-+--++ +.+.+.|+
T Consensus 113 vCt~El~~l~~~~~ef~-~~gv~VigIS~Ds---~--~~h~aw~~~~~~~~g~~~l~fPlLsD~~-------~~iakayG 179 (261)
T PTZ00137 113 VCPSELLGFSERLKEFE-ERGVKVLGVSVDS---P--FSHKAWKELDVRQGGVSPLKFPLFSDIS-------REVSKSFG 179 (261)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCEEEEEECCC---H--HHHHHHHhhhhhhccccCcceEEEEcCC-------hHHHHHcC
Confidence 567888999999996 4569999999832 1 144555542 1 234443333322 44556688
Q ss_pred cC-----CceEEEEECCCCceeccc
Q 046837 417 YS-----KKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 417 ~~-----~iP~LVvL~pqGkv~~~n 436 (658)
+. ..|...|+||+|++....
T Consensus 180 v~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 180 LLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred CCCcCCceecEEEEECCCCEEEEEE
Confidence 74 489999999999987643
No 44
>PRK15000 peroxidase; Provisional
Probab=97.39 E-value=0.00087 Score=67.13 Aligned_cols=93 Identities=12% Similarity=0.228 Sum_probs=65.4
Q ss_pred cCcEEEEEEecCCCC--ChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHHH-h---hc--CCCceeecC
Q 046837 329 KKKHVLLLISRPDDI--SQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFKN-L---QK--RMPWYSIQD 399 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~--~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~~-~---~~--~MPWyAVpf 399 (658)
+||.|.|+|=+.+|| |+.|++.|.+.|++++. .+++||=||.++ . ..+.|.+ + .. .+||..+--
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~-~g~~vigvS~D~------~~~~~~w~~~~~~~~g~~~i~fpllsD 105 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK-RGVEVVGVSFDS------EFVHNAWRNTPVDKGGIGPVKYAMVAD 105 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCC------HHHHHHHHhhHHHhCCccccCceEEEC
Confidence 799988888886476 56788889999999973 569999999732 2 3344432 1 11 345554433
Q ss_pred CCCCcHHHHHHHHHhhccC------CceEEEEECCCCceecc
Q 046837 400 PAMIQPAVIKYVKEEWKYS------KKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 400 ~~~i~~~~~r~ike~f~~~------~iP~LVvL~pqGkv~~~ 435 (658)
++ +.+.+.|++. ..|..+++||+|++...
T Consensus 106 ~~-------~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 106 VK-------REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred CC-------cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 32 3455568887 69999999999998764
No 45
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.37 E-value=0.00065 Score=64.30 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=54.5
Q ss_pred ccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837 328 LKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP 405 (658)
Q Consensus 328 L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~ 405 (658)
-+||.|+|+|.+. ||++| +.+.|.+++++.+ ..+.++.|-+ | ++ .+.
T Consensus 18 ~~gk~vvV~F~A~-WC~~C~~~~p~l~~l~~~~~--~~~~~v~v~v-d------~~--~~~------------------- 66 (142)
T cd02950 18 SNGKPTLVEFYAD-WCTVCQEMAPDVAKLKQKYG--DQVNFVMLNV-D------NP--KWL------------------- 66 (142)
T ss_pred hCCCEEEEEEECC-cCHHHHHhHHHHHHHHHHhc--cCeeEEEEEc-C------Cc--ccH-------------------
Confidence 3589999999999 99776 4667888888775 4577888775 2 11 110
Q ss_pred HHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
.+.+.|+++++|++++++++|+++..
T Consensus 67 ----~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 67 ----PEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred ----HHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 12356999999999999999998853
No 46
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.30 E-value=0.0012 Score=65.88 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=69.1
Q ss_pred EEecccccC-cEE-EEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhcCCCcee
Q 046837 322 TVQIHVLKK-KHV-LLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQKRMPWYS 396 (658)
Q Consensus 322 kV~Is~L~g-K~V-lLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~~MPWyA 396 (658)
++.+++++| |.| +++|-+. |||. .++..|.+.|++++ +.+++|+-||+++ .+...+|.+ ..+.+. +.
T Consensus 16 ~~~l~d~~g~k~vvlf~~pa~-~cp~C~~el~~l~~~~~~f~-~~gv~vigvS~D~-----~~~~~~~~~~i~~~~~-~~ 87 (203)
T cd03016 16 PIKFHDYLGDSWGILFSHPAD-FTPVCTTELGAFAKLAPEFK-KRNVKLIGLSVDS-----VESHIKWIEDIEEYTG-VE 87 (203)
T ss_pred cEeHHHHcCCCEEEEEEecCC-CCCcCHHHHHHHHHHHHHHH-HcCCEEEEEECCC-----HHHHHHHHhhHHHhcC-CC
Confidence 589999999 655 4467777 8864 66778999999996 3568999999843 123344432 222223 45
Q ss_pred ecCCCCCcHHHHHHHHHhhccC----C----ceEEEEECCCCceecc
Q 046837 397 IQDPAMIQPAVIKYVKEEWKYS----K----KAIIVSVDPQGRILNQ 435 (658)
Q Consensus 397 Vpf~~~i~~~~~r~ike~f~~~----~----iP~LVvL~pqGkv~~~ 435 (658)
++||-..|.. +.+.+.|++. + .|..+||||+|++...
T Consensus 88 ~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 88 IPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred CceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 6665444433 4556667765 3 3569999999998643
No 47
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.25 E-value=0.0011 Score=58.39 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=53.1
Q ss_pred cCcEEEEEEecCCCCChHHHH--HHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhh--cCCCceeecCCCCC
Q 046837 329 KKKHVLLLISRPDDISQEEIL--FLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQ--KRMPWYSIQDPAMI 403 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~--~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~--~~MPWyAVpf~~~i 403 (658)
+||+++++|++. |||.|... .+.+.-+-.+. ++++.++.+.+.+ +....+.-+. .. +++
T Consensus 4 ~~k~~v~~F~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~~--- 67 (112)
T PF13098_consen 4 NGKPIVVVFTDP-WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDD------SRDESEAVLDFDGQ------KNV--- 67 (112)
T ss_dssp TSSEEEEEEE-T-T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHS------HHHHHHHHHSHTCH------SSC---
T ss_pred CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCC------cccccccccccccc------hhh---
Confidence 489999999999 99887643 34433221121 3578898888732 2222222111 11 111
Q ss_pred cHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILN 434 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 434 (658)
....+.+.+.|++.+-|+++++|++|+++.
T Consensus 68 -~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 68 -RLSNKELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp -HHHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred -hHHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 134557888899999999999999999763
No 48
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.18 E-value=0.0015 Score=65.32 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=70.7
Q ss_pred CCcEEecccccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeE------EEEecccCCCcchh---hHHHHHH
Q 046837 319 TRTTVQIHVLKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRI------VWLPIVDGSIDRQQ---ALDKFKN 387 (658)
Q Consensus 319 ~~~kV~Is~L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEI------VwIpivD~s~~W~d---de~~F~~ 387 (658)
+.+.++.+.|+||.+++-|-|. ||++|+ .|.|..+ + ..+|.+ +=|...|. .|.. -++..++
T Consensus 48 ~y~~~~~~~l~GKV~lvn~~As-wc~~c~~e~P~l~~l----~-~~~~~~~~y~~t~~IN~dd~--~~~~~~fVk~fie~ 119 (184)
T TIGR01626 48 VYQPWGSAELAGKVRVVHHIAG-RTSAKEXNASLIDAI----K-AAKFPPVKYQTTTIINADDA--IVGTGMFVKSSAKK 119 (184)
T ss_pred cceeccHHHcCCCEEEEEEEec-CCChhhccchHHHHH----H-HcCCCcccccceEEEECccc--hhhHHHHHHHHHHH
Confidence 3456788899999999999999 997754 6678877 2 234777 77776431 2221 1122245
Q ss_pred hhcCCCceeecCCCCCcHHHHHHHHHhhccCCceEE-EEECCCCceecc
Q 046837 388 LQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAII-VSVDPQGRILNQ 435 (658)
Q Consensus 388 ~~~~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~L-VvL~pqGkv~~~ 435 (658)
....-||-.+-... .+ .+...|++.++|.- +|+|++|+++..
T Consensus 120 ~~~~~P~~~vllD~----~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 120 GKKENPWSQVVLDD----KG--AVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred hcccCCcceEEECC----cc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 56678987666633 22 23457999999888 799999998743
No 49
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.16 E-value=0.00037 Score=72.99 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=62.9
Q ss_pred cEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837 321 TTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ 398 (658)
Q Consensus 321 ~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp 398 (658)
+...++.|+||.++++|.+. ||++| +.+.|.+++++.. ++|+.|++++ +.. ..+|-+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~As-wCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~------~~~-------~~fp~~--- 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKS-DCPYCHQQAPILQAFEDRYG----IEVLPVSVDG------GPL-------PGFPNA--- 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEECC-CCccHHHHhHHHHHHHHHcC----cEEEEEeCCC------Ccc-------ccCCcc---
Confidence 34678889999999999999 99765 5678998888863 8999999732 111 112222
Q ss_pred CCCCCcHHHHHHHHHhhccCCceEEEEECCCCceeccch
Q 046837 399 DPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNA 437 (658)
Q Consensus 399 f~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA 437 (658)
.. + +.+.+.|+++++|++++++++|+.+..-+
T Consensus 216 ~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~v~ 247 (271)
T TIGR02740 216 RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTPIG 247 (271)
T ss_pred cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEEEE
Confidence 11 1 12456799999999999999765544433
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.11 E-value=0.0016 Score=65.00 Aligned_cols=87 Identities=9% Similarity=0.031 Sum_probs=64.0
Q ss_pred CCCcEEecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCce
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWY 395 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWy 395 (658)
.+|+.+.++.++ +++|-+. |||+ .|.+.|+++|++.+ |+|+-|++++ +.+
T Consensus 61 ~dG~~v~lsd~~----lV~Fwas-wCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~------~~~------------- 112 (181)
T PRK13728 61 SNGRQVNLADWK----VVLFMQG-HCPYCHQFDPVLKQLAQQYG----FSVFPYTLDG------QGD------------- 112 (181)
T ss_pred CCCCEeehhHce----EEEEECC-CCHhHHHHHHHHHHHHHHcC----CEEEEEEeCC------CCC-------------
Confidence 477889999998 5668889 9965 57889999999973 9999999732 111
Q ss_pred eecCCCCCc-HHHHHHHHHhhcc--CCceEEEEECCCCceecc
Q 046837 396 SIQDPAMIQ-PAVIKYVKEEWKY--SKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 396 AVpf~~~i~-~~~~r~ike~f~~--~~iP~LVvL~pqGkv~~~ 435 (658)
+.||-.++ .. ..+.+.|+. .++|+.+++|++|+++-+
T Consensus 113 -~~fPv~~dd~~--~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 113 -TAFPEALPAPP--DVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred -CCCceEecCch--hHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 34554442 22 345667884 699999999999998643
No 51
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.07 E-value=0.0028 Score=59.38 Aligned_cols=79 Identities=8% Similarity=-0.015 Sum_probs=49.9
Q ss_pred cCcEEEEEEecCCCCChHHHH-----HHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837 329 KKKHVLLLISRPDDISQEEIL-----FLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI 403 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~-----~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i 403 (658)
++|.|+|+|++. ||+.|... .-.++-+.+. .+|-.|-|=. ++.. ...
T Consensus 14 ~~KpVll~f~a~-WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~-------~~~~-~~~----------------- 65 (124)
T cd02955 14 EDKPIFLSIGYS-TCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDR-------EERP-DVD----------------- 65 (124)
T ss_pred cCCeEEEEEccC-CCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeC-------CcCc-HHH-----------------
Confidence 489999999999 99876522 1234444443 4565544322 1111 011
Q ss_pred cHHHHHHHHHhhccCCceEEEEECCCCceeccc
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~n 436 (658)
....++....|++.|.|++|++||+|++++..
T Consensus 66 -~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 66 -KIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred -HHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 11233445578999999999999999998765
No 52
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.07 E-value=0.0026 Score=55.82 Aligned_cols=72 Identities=10% Similarity=0.018 Sum_probs=49.3
Q ss_pred cCcEEEEEEecCCCCChHHHH--HH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837 329 KKKHVLLLISRPDDISQEEIL--FL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI 403 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~--~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i 403 (658)
+||.|+++|++. ||++|... .+ .++.+.++ +++.++.|-. ++++
T Consensus 10 ~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~-------~~~~--------------------- 58 (104)
T cd02953 10 QGKPVFVDFTAD-WCVTCKVNEKVVFSDPEVQAALK--KDVVLLRADW-------TKND--------------------- 58 (104)
T ss_pred cCCeEEEEEEcc-hhHHHHHHHHHhcCCHHHHHHHh--CCeEEEEEec-------CCCC---------------------
Confidence 478999999999 99887543 33 45666664 2555555543 2211
Q ss_pred cHHHHHHHHHhhccCCceEEEEECC-CCcee
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVDP-QGRIL 433 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~p-qGkv~ 433 (658)
.....+.+.|++.++|++++++| +|+++
T Consensus 59 --~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 59 --PEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred --HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 11234566799999999999999 89875
No 53
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.03 E-value=0.0047 Score=59.80 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=54.9
Q ss_pred cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837 327 VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ 404 (658)
Q Consensus 327 ~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~ 404 (658)
...++.++++|-+. ||++ .+.|.|.++|++. +++|+.|++++ +..+.| | +.++. +
T Consensus 47 ~~l~~~~lvnFWAs-WCppCr~e~P~L~~l~~~~----~~~Vi~Vs~d~------~~~~~f-------p---~~~~~--~ 103 (153)
T TIGR02738 47 ANQDDYALVFFYQS-TCPYCHQFAPVLKRFSQQF----GLPVYAFSLDG------QGLTGF-------P---DPLPA--T 103 (153)
T ss_pred hhcCCCEEEEEECC-CChhHHHHHHHHHHHHHHc----CCcEEEEEeCC------Cccccc-------c---cccCC--c
Confidence 34456669999999 9966 5688999999886 38999999732 111111 2 22221 1
Q ss_pred HHHHHHHHHhh---ccCCceEEEEECCCCceec
Q 046837 405 PAVIKYVKEEW---KYSKKAIIVSVDPQGRILN 434 (658)
Q Consensus 405 ~~~~r~ike~f---~~~~iP~LVvL~pqGkv~~ 434 (658)
.. .+...| ++.++|+.+++|++|+++-
T Consensus 104 ~~---~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 104 PE---VMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred hH---HHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 12 223345 7899999999999988643
No 54
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.01 E-value=0.0029 Score=64.28 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=71.4
Q ss_pred CCCCcEEecccccCcEE-EEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837 317 GETRTTVQIHVLKKKHV-LLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP 393 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~V-lLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP 393 (658)
...|+.+..++++||.| +++|=+. |||. .|+..|.+.|++++. .+++||=||.++ ......|.+..+.+-
T Consensus 15 t~~G~~~~~~~~~Gk~vVL~~~pa~-~tpvCt~El~~l~~~~~~f~~-~gv~vigIS~D~-----~~~~~~w~~~i~~~~ 87 (215)
T PRK13599 15 TTQGVKRLPEDYAGKWFVLFSHPAD-FTPVCTTEFVEFARKANDFKE-LNTELIGLSVDQ-----VFSHIKWVEWIKDNT 87 (215)
T ss_pred CCCCcEecHHHHCCCeEEEEEeCCC-CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC-----HHHHHHHHHhHHHhc
Confidence 34566677789999974 6677788 9854 677789999999863 468999999732 114555654322110
Q ss_pred ceeecCCCCCcHHHHHHHHHhhcc-------CCceEEEEECCCCceecc
Q 046837 394 WYSIQDPAMIQPAVIKYVKEEWKY-------SKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 394 WyAVpf~~~i~~~~~r~ike~f~~-------~~iP~LVvL~pqGkv~~~ 435 (658)
=+.++||=..|.. +.+.+.|++ ...|...|+||+|++...
T Consensus 88 ~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 88 NIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred CCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 0123443322221 234455776 368999999999999765
No 55
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.96 E-value=0.0034 Score=63.69 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=67.5
Q ss_pred CCcEEec-ccccCcEEEE-EEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc----
Q 046837 319 TRTTVQI-HVLKKKHVLL-LISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK---- 390 (658)
Q Consensus 319 ~~~kV~I-s~L~gK~VlL-yfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~---- 390 (658)
.|+ +.. +.++||.|.| +|=+. ||+ +.|+..|.+.|++++. .+.+||=||+++ ......|.+...
T Consensus 22 ~G~-~~l~~~~~GK~vvLff~pa~-ftpvC~tEl~~l~~~~~ef~~-~g~~VigvS~Ds-----~~~h~aw~~~~~~~~~ 93 (215)
T PRK13191 22 HGK-IKLPDDYKGRWFVLFSHPGD-FTPVCTTEFYSFAKKYEEFKK-LNTELIGLSVDS-----NISHIEWVMWIEKNLK 93 (215)
T ss_pred CCC-EEcHHHhCCCcEEEEEeCCC-CCCcCHHHHHHHHHHHHHHHH-CCCEEEEEECCC-----HHHHHHHHhhHHHhcC
Confidence 454 555 4589997665 66777 984 5778889999999963 469999999732 114344543221
Q ss_pred -CCCceeecCCCCCcHHHHHHHHHhhccC-------CceEEEEECCCCceecc
Q 046837 391 -RMPWYSIQDPAMIQPAVIKYVKEEWKYS-------KKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 391 -~MPWyAVpf~~~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~~ 435 (658)
..||..+--++ +.+.+.|++- ..|...||||+|++...
T Consensus 94 ~~i~fPllsD~~-------~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 94 VEVPFPIIADPM-------GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred CCCceEEEECCc-------hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 45554443332 3444557753 37999999999998764
No 56
>PRK13189 peroxiredoxin; Provisional
Probab=96.93 E-value=0.0043 Score=63.18 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCcEEeccc-ccCcEEEE-EEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH-hhc--
Q 046837 318 ETRTTVQIHV-LKKKHVLL-LISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN-LQK-- 390 (658)
Q Consensus 318 ~~~~kV~Is~-L~gK~VlL-yfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~-~~~-- 390 (658)
..|+ +.+++ ++||.|.| +|=+. ||+ +.|+..|.+.|++.+ +.+.+||-||.++. ....+|-+ +.+
T Consensus 23 ~~g~-~~l~d~~~Gk~vvL~f~pa~-fcpvC~tEl~~l~~~~~ef~-~~~v~VigvS~D~~-----~~h~aw~~~~~~~~ 94 (222)
T PRK13189 23 THGP-IKLPDDYKGKWFVLFSHPAD-FTPVCTTEFVAFQKRYDEFR-ELNTELIGLSIDQV-----FSHIKWVEWIKEKL 94 (222)
T ss_pred CCCC-EeeHHHhCCCeEEEEEeCCC-CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEECCCH-----HHHHHHHHhHHHhc
Confidence 3443 66665 69997655 56677 985 567888999999996 45799999998421 13334433 221
Q ss_pred --CCCceeecCCCCCcHHHHHHHHHhhccC-------CceEEEEECCCCceec
Q 046837 391 --RMPWYSIQDPAMIQPAVIKYVKEEWKYS-------KKAIIVSVDPQGRILN 434 (658)
Q Consensus 391 --~MPWyAVpf~~~i~~~~~r~ike~f~~~-------~iP~LVvL~pqGkv~~ 434 (658)
.+|+.-+--+ . +.+.+.|++. ..|..++|||+|++..
T Consensus 95 g~~i~fPllsD~-----~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~ 140 (222)
T PRK13189 95 GVEIEFPIIADD-----R--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRA 140 (222)
T ss_pred CcCcceeEEEcC-----c--cHHHHHhCCCccccCCCceeEEEEECCCCeEEE
Confidence 3444333222 2 3444557754 4799999999999854
No 57
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.87 E-value=0.009 Score=59.49 Aligned_cols=123 Identities=7% Similarity=0.103 Sum_probs=79.3
Q ss_pred CCCcEEecccccCcEEEEEEecCCCCCh-HHHHHHHHHHHHhcCCCCeeEEEEecccC-CCcchh--hHHHHHH--hhcC
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDISQ-EEILFLSNMYKDLKESKECRIVWLPIVDG-SIDRQQ--ALDKFKN--LQKR 391 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~~~~~L~~iY~~lk~~~~fEIVwIpivD~-s~~W~d--de~~F~~--~~~~ 391 (658)
.+|+.|++++++||.|++.|-|. ||+. .+.+.|.++|++.+ ..+|+||=||..+- ..+.++ +-..|-. +--+
T Consensus 13 ~~G~~v~Ls~~~GKvvLVvf~AS-~C~~~~q~~~L~~L~~~y~-~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~ 90 (183)
T PRK10606 13 IDGEVTTLEKYAGNVLLIVNVAS-KCGLTPQYEQLENIQKAWA-DQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT 90 (183)
T ss_pred CCCCEEeHHHhCCCEEEEEEEeC-CCCCcHHHHHHHHHHHHHh-hCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC
Confidence 46678999999999999999999 9964 46778999999986 35699999998320 001111 3344432 2222
Q ss_pred CCce---eecCCCCCcHHHHHHHHHhhccCCc----------------eE----------EEEECCCCceeccchHHHHH
Q 046837 392 MPWY---SIQDPAMIQPAVIKYVKEEWKYSKK----------------AI----------IVSVDPQGRILNQNAFHTLW 442 (658)
Q Consensus 392 MPWy---AVpf~~~i~~~~~r~ike~f~~~~i----------------P~----------LVvL~pqGkv~~~nA~~mI~ 442 (658)
.|=+ .|.-+. ..++-+||++....... |. =-++|++|+|+.
T Consensus 91 Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~-------- 160 (183)
T PRK10606 91 FPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ-------- 160 (183)
T ss_pred ceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEE--------
Confidence 3322 111111 23588999876543211 11 467899999964
Q ss_pred HhCCccccCC
Q 046837 443 IWGISAFPFT 452 (658)
Q Consensus 443 ~wG~~AFPFT 452 (658)
.|+...-|-+
T Consensus 161 r~~~~~~p~~ 170 (183)
T PRK10606 161 RFSPDMTPED 170 (183)
T ss_pred EECCCCCCCH
Confidence 4888888854
No 58
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.64 E-value=0.0065 Score=55.21 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=53.1
Q ss_pred cC-cEEEEEEecCCCCChHHH--HHH---HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837 329 KK-KHVLLLISRPDDISQEEI--LFL---SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM 402 (658)
Q Consensus 329 ~g-K~VlLyfSa~~~~~~~~~--~~L---~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~ 402 (658)
+| |.|+++|++. ||++|.. +.+ ..+.+.++ ++|.++-|.+.+. .....|+. ..
T Consensus 12 ~~~k~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~-----~~~~~~~~------------~~- 70 (125)
T cd02951 12 DGKKPLLLLFSQP-GCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGD-----KEVTDFDG------------EA- 70 (125)
T ss_pred cCCCcEEEEEeCC-CCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCC-----ceeeccCC------------CC-
Confidence 36 8899999999 9987653 333 24555554 4677777776320 01111211 00
Q ss_pred CcHHHHHHHHHhhccCCceEEEEECCC-Cceec
Q 046837 403 IQPAVIKYVKEEWKYSKKAIIVSVDPQ-GRILN 434 (658)
Q Consensus 403 i~~~~~r~ike~f~~~~iP~LVvL~pq-Gkv~~ 434 (658)
...+.+...|++++.|++++++++ |+++.
T Consensus 71 ---~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~ 100 (125)
T cd02951 71 ---LSEKELARKYRVRFTPTVIFLDPEGGKEIA 100 (125)
T ss_pred ---ccHHHHHHHcCCccccEEEEEcCCCCceeE
Confidence 124566778999999999999999 88764
No 59
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.52 E-value=0.0091 Score=51.34 Aligned_cols=67 Identities=7% Similarity=0.153 Sum_probs=48.4
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+||.|+++|.+. ||++|. .+.|.++++... +. +.++-+ | -++
T Consensus 11 ~~~~vlv~f~a~-wC~~C~~~~~~~~~~~~~~~--~~--~~~~~v-d------~~~------------------------ 54 (96)
T cd02956 11 TQVPVVVDFWAP-RSPPSKELLPLLERLAEEYQ--GQ--FVLAKV-N------CDA------------------------ 54 (96)
T ss_pred CCCeEEEEEECC-CChHHHHHHHHHHHHHHHhC--Cc--EEEEEE-e------ccC------------------------
Confidence 378999999999 998765 567888887764 22 556665 1 011
Q ss_pred HHHHHHHhhccCCceEEEEECCCCcee
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
.+.+.+.|++++.|++++++ +|+.+
T Consensus 55 -~~~l~~~~~i~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 55 -QPQIAQQFGVQALPTVYLFA-AGQPV 79 (96)
T ss_pred -CHHHHHHcCCCCCCEEEEEe-CCEEe
Confidence 01355679999999999997 89875
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.34 E-value=0.02 Score=50.81 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=48.1
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+||.|+|.|.+. ||++|. .+.|.++.++. .+ +.|+-+ | .+++.
T Consensus 14 ~~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~---~~--v~~~~v-d----~d~~~------------------------ 58 (103)
T cd02985 14 KGRLVVLEFALK-HSGPSVKIYPTMVKLSRTC---ND--VVFLLV-N----GDEND------------------------ 58 (103)
T ss_pred CCCEEEEEEECC-CCHhHHHHhHHHHHHHHHC---CC--CEEEEE-E----CCCCh------------------------
Confidence 489999999999 998764 56788887776 23 455555 1 11211
Q ss_pred HHHHHHHhhccCCceEEEEECCCCcee
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
..+.+.+.|+++++|+++++ .+|+++
T Consensus 59 ~~~~l~~~~~V~~~Pt~~~~-~~G~~v 84 (103)
T cd02985 59 STMELCRREKIIEVPHFLFY-KDGEKI 84 (103)
T ss_pred HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence 12245567999999998777 789875
No 61
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.96 E-value=0.013 Score=50.32 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=42.2
Q ss_pred CcEEEEEccCC-chHHHHHHHHHHHHHhhcC--CceeEEEeeccChhhHHHHhhccc
Q 046837 485 ERFICLYGGND-EAWIRKFRNSAKDVASKAQ--INWGMAYVGKKNAKKRLEEISSSI 538 (658)
Q Consensus 485 gK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~--~~~E~v~Vgkdn~~e~v~~~~~~i 538 (658)
||+++|||.+. -..|+++.+.+.+++++.+ ..+++|+|+.|...+..++..+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 89999999994 2445999999999987644 999999999998777777766555
No 62
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.94 E-value=0.094 Score=53.13 Aligned_cols=111 Identities=16% Similarity=0.307 Sum_probs=75.4
Q ss_pred ccCCCCcEEecccccCcEEEEEEecCCCC---ChHHHHHHHHHHHHhc-C-CCCeeEEEEecccCCCcchhhHHHHHHhh
Q 046837 315 VDGETRTTVQIHVLKKKHVLLLISRPDDI---SQEEILFLSNMYKDLK-E-SKECRIVWLPIVDGSIDRQQALDKFKNLQ 389 (658)
Q Consensus 315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~---~~~~~~~L~~iY~~lk-~-~~~fEIVwIpivD~s~~W~dde~~F~~~~ 389 (658)
+....|+++....|+||.+++||.=- -| ||-.+..|.++.++|. . ..++.+|+|+++ ++.|..+.-++|-
T Consensus 52 l~d~~G~~~~~~~l~Gk~~lv~FgyT-~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~Y~ 126 (207)
T COG1999 52 LTDQDGKPFTLKDLKGKPSLVFFGYT-HCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKKYA 126 (207)
T ss_pred eecCCCCEeeccccCCCEEEEEeecC-CCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHHHh
Confidence 34457888999999999999999966 56 5677788999999997 3 589999999984 4455444555555
Q ss_pred c--C-CCceeecCCCCCcHHHHHHHHHhhcc---------------CCceEEEEECCCCceec
Q 046837 390 K--R-MPWYSIQDPAMIQPAVIKYVKEEWKY---------------SKKAIIVSVDPQGRILN 434 (658)
Q Consensus 390 ~--~-MPWyAVpf~~~i~~~~~r~ike~f~~---------------~~iP~LVvL~pqGkv~~ 434 (658)
. - =+|-.+--+ .+.++.+...|++ .+-..+.++||+|++..
T Consensus 127 ~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 127 ELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred cccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 4 1 124444442 2333333333333 34456788899998864
No 63
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.85 E-value=0.015 Score=53.40 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=43.2
Q ss_pred cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+||.|+|.|+|. ||++|.. +.+.+.-+... .+-.+|.|-+ | ++++..
T Consensus 18 ~~kpVlV~F~a~-WC~~C~~~~~~~~~~~~~~~--~~~~fv~v~v-d------~~~~~~--------------------- 66 (117)
T cd02959 18 SGKPLMLLIHKT-WCGACKALKPKFAESKEISE--LSHNFVMVNL-E------DDEEPK--------------------- 66 (117)
T ss_pred cCCcEEEEEeCC-cCHHHHHHHHHHhhhHHHHh--hcCcEEEEEe-c------CCCCch---------------------
Confidence 488999999999 9988763 33444333222 1223455544 1 111000
Q ss_pred HHHHHHHhhccCC--ceEEEEECCCCceecc
Q 046837 407 VIKYVKEEWKYSK--KAIIVSVDPQGRILNQ 435 (658)
Q Consensus 407 ~~r~ike~f~~~~--iP~LVvL~pqGkv~~~ 435 (658)
.+.|++.+ +|+++++||+|+++..
T Consensus 67 -----~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 67 -----DEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred -----hhhcccCCCccceEEEECCCCCCchh
Confidence 11356665 9999999999999753
No 64
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.82 E-value=0.017 Score=51.40 Aligned_cols=69 Identities=7% Similarity=-0.015 Sum_probs=48.8
Q ss_pred cccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837 327 VLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ 404 (658)
Q Consensus 327 ~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~ 404 (658)
.++||.|++.|.|. ||++| ..+.|.++.++.+ + +.++-+++ +. .+
T Consensus 15 ~~~g~~vlV~F~a~-WC~~C~~~~p~l~~la~~~~---~--~~~~~vd~-------~~---------------~~----- 61 (100)
T cd02999 15 FNREDYTAVLFYAS-WCPFSASFRPHFNALSSMFP---Q--IRHLAIEE-------SS---------------IK----- 61 (100)
T ss_pred hcCCCEEEEEEECC-CCHHHHhHhHHHHHHHHHhc---c--CceEEEEC-------CC---------------CC-----
Confidence 47899999999999 99765 4678888888774 2 44555521 20 11
Q ss_pred HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837 405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
..+.+.|++++.|+++++++. .+.
T Consensus 62 ----~~l~~~~~V~~~PT~~lf~~g-~~~ 85 (100)
T cd02999 62 ----PSLLSRYGVVGFPTILLFNST-PRV 85 (100)
T ss_pred ----HHHHHhcCCeecCEEEEEcCC-cee
Confidence 134567999999999999754 443
No 65
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.74 E-value=0.05 Score=47.42 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=47.3
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
.+|.|+++|++. ||+.|. .+.|.++.+++. +++.++.|-+ +++.
T Consensus 12 ~~~~vlv~f~a~-~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~-------d~~~------------------------ 57 (97)
T cd02949 12 SDRLILVLYTSP-TCGPCRTLKPILNKVIDEFD--GAVHFVEIDI-------DEDQ------------------------ 57 (97)
T ss_pred CCCeEEEEEECC-CChhHHHHHHHHHHHHHHhC--CceEEEEEEC-------CCCH------------------------
Confidence 368899999999 997754 667888888875 3444444332 1111
Q ss_pred HHHHHHHhhccCCceEEEEECCCCcee
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
.+.+.+++.+.|+++++. +|+++
T Consensus 58 ---~l~~~~~v~~vPt~~i~~-~g~~v 80 (97)
T cd02949 58 ---EIAEAAGIMGTPTVQFFK-DKELV 80 (97)
T ss_pred ---HHHHHCCCeeccEEEEEE-CCeEE
Confidence 134568999999999995 78876
No 66
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.69 E-value=0.038 Score=51.66 Aligned_cols=78 Identities=8% Similarity=0.126 Sum_probs=54.0
Q ss_pred cCcEEEEEEec-------CCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecC
Q 046837 329 KKKHVLLLISR-------PDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQD 399 (658)
Q Consensus 329 ~gK~VlLyfSa-------~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf 399 (658)
+||.|.++|+| . ||++|. -+.|.++.++.+ .+..++.|=+ |....|.+.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~-WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdv-d~~~~w~d~------------------ 77 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQS-WCPDCVKAEPVVREALKAAP--EDCVFIYCDV-GDRPYWRDP------------------ 77 (119)
T ss_pred CCCeEEEEEEccCCCCCCC-CCHhHHhhchhHHHHHHHCC--CCCEEEEEEc-CCcccccCc------------------
Confidence 47899999999 9 998876 467999888875 3455566554 211112110
Q ss_pred CCCCcHHHHHHHHHhhccC-CceEEEEECCCCceeccc
Q 046837 400 PAMIQPAVIKYVKEEWKYS-KKAIIVSVDPQGRILNQN 436 (658)
Q Consensus 400 ~~~i~~~~~r~ike~f~~~-~iP~LVvL~pqGkv~~~n 436 (658)
...+...|+++ ++|+++++...|+++.++
T Consensus 78 --------~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 78 --------NNPFRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred --------chhhHhccCcccCCCEEEEEcCCceecchh
Confidence 12334568888 999999998888887665
No 67
>PTZ00051 thioredoxin; Provisional
Probab=95.53 E-value=0.048 Score=46.92 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=46.5
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|+|+|.+. ||++|. .+.|.++.++.. ++.|+.+. .++
T Consensus 18 ~~~vli~f~~~-~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd-------~~~------------------------- 59 (98)
T PTZ00051 18 NELVIVDFYAE-WCGPCKRIAPFYEECSKEYT-----KMVFVKVD-------VDE------------------------- 59 (98)
T ss_pred CCeEEEEEECC-CCHHHHHHhHHHHHHHHHcC-----CcEEEEEE-------Ccc-------------------------
Confidence 67899999999 998765 456777776542 36777762 111
Q ss_pred HHHHHHhhccCCceEEEEECCCCcee
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
...+.+.|++++.|+++++ .+|+++
T Consensus 60 ~~~~~~~~~v~~~Pt~~~~-~~g~~~ 84 (98)
T PTZ00051 60 LSEVAEKENITSMPTFKVF-KNGSVV 84 (98)
T ss_pred hHHHHHHCCCceeeEEEEE-eCCeEE
Confidence 1235567999999998877 688876
No 68
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.45 E-value=0.066 Score=45.73 Aligned_cols=69 Identities=14% Similarity=0.062 Sum_probs=49.3
Q ss_pred cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+++.+.++|.+. ||+.| +.+.|.++.+.++.+.++.++.+.+ ++.
T Consensus 12 ~~~~~~i~f~~~-~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~---------~~~----------------------- 58 (102)
T TIGR01126 12 SNKDVLVEFYAP-WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA---------TAE----------------------- 58 (102)
T ss_pred cCCcEEEEEECC-CCHHHHhhChHHHHHHHHhccCCceEEEEEEc---------cch-----------------------
Confidence 688999999999 99765 4567888877775444454444443 110
Q ss_pred HHHHHHHhhccCCceEEEEECCCCce
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
..+.+.|++++.|++++++++|.+
T Consensus 59 --~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 59 --KDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred --HHHHHhCCCCcCCEEEEecCCCcc
Confidence 234566999999999999998864
No 69
>PRK10996 thioredoxin 2; Provisional
Probab=95.39 E-value=0.043 Score=51.71 Aligned_cols=69 Identities=7% Similarity=0.197 Sum_probs=48.8
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
++|.|+|+|.+. ||+++. .+.|.+++++.. ++ +.|+-+ |. ++ .
T Consensus 51 ~~k~vvv~F~a~-wC~~C~~~~~~l~~l~~~~~--~~--v~~~~v-d~-----~~----------------------~-- 95 (139)
T PRK10996 51 DDLPVVIDFWAP-WCGPCRNFAPIFEDVAAERS--GK--VRFVKV-NT-----EA----------------------E-- 95 (139)
T ss_pred CCCeEEEEEECC-CCHHHHHHHHHHHHHHHHhC--CC--eEEEEE-eC-----CC----------------------C--
Confidence 478999999999 998754 567888887764 23 566665 20 11 0
Q ss_pred HHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
..+.+.|++++.|++++++ +|+.+..
T Consensus 96 --~~l~~~~~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 96 --RELSARFRIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred --HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence 1245679999999999885 8987643
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.35 E-value=0.088 Score=46.57 Aligned_cols=67 Identities=4% Similarity=0.105 Sum_probs=46.1
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
.||.|.|+|.+. ||++|. .+.|.+++++.+. .. +.|+-+ | -|. .+
T Consensus 16 ~~~~vvv~F~a~-wC~~Ck~~~p~l~~~~~~~~~-~~--~~~~~v-d------~d~----------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQE-WCGPCKAVVSLFKKIKNELGD-DL--LHFATA-E------ADT----------------------ID 62 (102)
T ss_pred cCCeEEEEEECC-cCHhHHHHhHHHHHHHHHcCC-Cc--EEEEEE-e------CCC----------------------HH
Confidence 378999999999 998765 5678888888752 22 444444 1 011 01
Q ss_pred HHHHHHHhhccCCceEEEEECCCCcee
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
+.+.|++++.|+++++. +|+.+
T Consensus 63 ----~~~~~~v~~~Pt~~~~~-~g~~~ 84 (102)
T cd02948 63 ----TLKRYRGKCEPTFLFYK-NGELV 84 (102)
T ss_pred ----HHHHcCCCcCcEEEEEE-CCEEE
Confidence 23569999999998885 77654
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.19 E-value=0.34 Score=48.69 Aligned_cols=146 Identities=8% Similarity=0.005 Sum_probs=76.3
Q ss_pred CcEEEEEEe--cCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 330 KKHVLLLIS--RPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 330 gK~VlLyfS--a~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
|+.|.+|++ +. ||++|.. +..+++++.. .++.+|.++-++ .++
T Consensus 20 ~~~i~~f~~~~a~-wC~~C~~--~~p~l~~la~~~~~~~i~~v~vd-------~~~------------------------ 65 (215)
T TIGR02187 20 PVEIVVFTDNDKE-GCQYCKE--TEQLLEELSEVSPKLKLEIYDFD-------TPE------------------------ 65 (215)
T ss_pred CeEEEEEcCCCCC-CCCchHH--HHHHHHHHHhhCCCceEEEEecC-------Ccc------------------------
Confidence 566667666 58 9998764 3445555432 245778888872 011
Q ss_pred HHHHHHHhhccCCceEEEEECCCCceec--cchH---HHHHHhCCccccCChhhHHHhhhcCCCchhhcccCCChhhhh-
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRILN--QNAF---HTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILE- 480 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~~--~nA~---~mI~~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~- 480 (658)
-+.+.+.|++++.|++++++. |+.+. ..|. +-+. +.++++-.. .-....+++...+
T Consensus 66 -~~~l~~~~~V~~~Pt~~~f~~-g~~~~~~~~G~~~~~~l~-----------~~i~~~~~~-----~~~~~~L~~~~~~~ 127 (215)
T TIGR02187 66 -DKEEAEKYGVERVPTTIILEE-GKDGGIRYTGIPAGYEFA-----------ALIEDIVRV-----SQGEPGLSEKTVEL 127 (215)
T ss_pred -cHHHHHHcCCCccCEEEEEeC-CeeeEEEEeecCCHHHHH-----------HHHHHHHHh-----cCCCCCCCHHHHHH
Confidence 123455699999999999974 44431 1121 1000 001111000 0000112232211
Q ss_pred --hhcCCcEEEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeeccChh
Q 046837 481 --WMKEERFICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAK 528 (658)
Q Consensus 481 --~i~egK~I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~ 528 (658)
-...+..|-+|....-.+|+..-..+.+++.+ ...+.++.|..+...
T Consensus 128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~ 176 (215)
T TIGR02187 128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENP 176 (215)
T ss_pred HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCH
Confidence 12355566666666557778777888888766 335555556655433
No 72
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=95.05 E-value=0.063 Score=46.21 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=45.0
Q ss_pred EEEEEEecCCCCChHH--HHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837 332 HVLLLISRPDDISQEE--ILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI 408 (658)
Q Consensus 332 ~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~ 408 (658)
.|+|+|.+. ||++|. .+.+.+++++.+. ..++.++-|-. +. .
T Consensus 18 ~~lv~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~---------~~----------------~--------- 62 (102)
T cd03005 18 NHFVKFFAP-WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC---------TQ----------------H--------- 62 (102)
T ss_pred CEEEEEECC-CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC---------CC----------------C---------
Confidence 499999999 997654 6679999998864 23444443322 10 0
Q ss_pred HHHHHhhccCCceEEEEECCCCcee
Q 046837 409 KYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 409 r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
..+.+.|++++.|+++++ ++|+.+
T Consensus 63 ~~~~~~~~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 63 RELCSEFQVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred hhhHhhcCCCcCCEEEEE-eCCCee
Confidence 023455899999999999 677653
No 73
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.32 Score=47.82 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=68.3
Q ss_pred cCCCCcEEecccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCC
Q 046837 316 DGETRTTVQIHVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMP 393 (658)
Q Consensus 316 ~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MP 393 (658)
-+.+|+.|.+++++||.|.|||=--++.|.| |.--+.+.|++++. -+.+|+=||.+. -+..++|.+-+ ..|
T Consensus 16 p~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~-~~a~V~GIS~Ds-----~~~~~~F~~k~-~L~ 88 (157)
T COG1225 16 PDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK-LGAVVLGISPDS-----PKSHKKFAEKH-GLT 88 (157)
T ss_pred ecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh-CCCEEEEEeCCC-----HHHHHHHHHHh-CCC
Confidence 3456667999999999999999777344433 34457777777753 489999999732 12778897633 333
Q ss_pred ceeecCCCCCcHHHHHHHHHhhccC------------CceEEEEECCCCceec
Q 046837 394 WYSIQDPAMIQPAVIKYVKEEWKYS------------KKAIIVSVDPQGRILN 434 (658)
Q Consensus 394 WyAVpf~~~i~~~~~r~ike~f~~~------------~iP~LVvL~pqGkv~~ 434 (658)
.--+--++ .+ +.+.|++- -++.-.|||++|++..
T Consensus 89 f~LLSD~~---~~----v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 89 FPLLSDED---GE----VAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred ceeeECCc---HH----HHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 22222211 22 44446653 3578899999999964
No 74
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.95 E-value=0.095 Score=50.60 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=41.1
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhc--------CCceeEEEeeccChhhHHHHhhc
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKA--------QINWGMAYVGKKNAKKRLEEISS 536 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~--------~~~~E~v~Vgkdn~~e~v~~~~~ 536 (658)
.||.++|||.+.+ ..|++|++.+.+++++. +.+||+++|+.|...+.+++..+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~ 85 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLK 85 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHH
Confidence 8999999999942 33599999999987631 34699999999976666766553
No 75
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=94.83 E-value=0.078 Score=47.79 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=49.7
Q ss_pred ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837 328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP 405 (658)
Q Consensus 328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~ 405 (658)
.+||.|+++|.+. ||++|. .+.+.++.++++. . ++.+.-+ |. ++
T Consensus 22 ~~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~-~--~v~~~~v-d~------d~----------------------- 67 (111)
T cd02963 22 SFKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEP-L--GVGIATV-NA------GH----------------------- 67 (111)
T ss_pred cCCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHh-c--CceEEEE-ec------cc-----------------------
Confidence 4689999999999 998764 5678888888752 1 3444444 20 11
Q ss_pred HHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
-+.+.+.|++++.|+++++ ++|+.+..
T Consensus 68 --~~~l~~~~~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 68 --ERRLARKLGAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred --cHHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 0124566999999999999 48887643
No 76
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.75 E-value=0.11 Score=44.52 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=46.9
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
+|.|+++|.+. ||++|. .+.|.++.+++ ...+.|+-+ | .++
T Consensus 14 ~~~v~v~f~~~-~C~~C~~~~~~l~~l~~~~----~~~i~~~~v-d------~~~------------------------- 56 (97)
T cd02984 14 SKLLVLHFWAP-WAEPCKQMNQVFEELAKEA----FPSVLFLSI-E------AEE------------------------- 56 (97)
T ss_pred CCEEEEEEECC-CCHHHHHHhHHHHHHHHHh----CCceEEEEE-c------ccc-------------------------
Confidence 68999999999 997654 45677776665 236777776 2 111
Q ss_pred HHHHHHhhccCCceEEEEECCCCcee
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
...+.+.|++.+.|+++++. +|+.+
T Consensus 57 ~~~~~~~~~i~~~Pt~~~~~-~g~~~ 81 (97)
T cd02984 57 LPEISEKFEITAVPTFVFFR-NGTIV 81 (97)
T ss_pred CHHHHHhcCCccccEEEEEE-CCEEE
Confidence 11345669999999999995 88875
No 77
>PHA02278 thioredoxin-like protein
Probab=94.73 E-value=0.052 Score=49.14 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=45.5
Q ss_pred cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+++.|+++|.|. ||+||.. |.|.++-++.. .+.+++.|=+. +..++
T Consensus 13 ~~~~vvV~F~A~-WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd---------~~~~d-------------------- 60 (103)
T PHA02278 13 QKKDVIVMITQD-NCGKCEILKSVIPMFQESGD--IKKPILTLNLD---------AEDVD-------------------- 60 (103)
T ss_pred CCCcEEEEEECC-CCHHHHhHHHHHHHHHhhhc--CCceEEEEECC---------ccccc--------------------
Confidence 578899999999 9999873 45666544421 23445555541 11010
Q ss_pred HHHHHHHhhccCCceEEEEECCCCcee
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
...+.+.|+++++|+++++. +|+.+
T Consensus 61 -~~~l~~~~~I~~iPT~i~fk-~G~~v 85 (103)
T PHA02278 61 -REKAVKLFDIMSTPVLIGYK-DGQLV 85 (103)
T ss_pred -cHHHHHHCCCccccEEEEEE-CCEEE
Confidence 11255679999999999996 35554
No 78
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=94.69 E-value=0.081 Score=46.61 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=45.6
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+++.|+++|.+. ||++|. .+.|.+++++++.. ...+.+..+ | . +. +
T Consensus 14 ~~~~vlv~f~a~-wC~~C~~~~p~l~~l~~~~~~~-~~~~~~~~v-d----~--~~----------------~------- 61 (104)
T cd03000 14 KEDIWLVDFYAP-WCGHCKKLEPVWNEVGAELKSS-GSPVRVGKL-D----A--TA----------------Y------- 61 (104)
T ss_pred cCCeEEEEEECC-CCHHHHhhChHHHHHHHHHHhc-CCcEEEEEE-E----C--cc----------------C-------
Confidence 467899999999 998765 66798988887532 234666555 1 0 11 1
Q ss_pred HHHHHHHhhccCCceEEEEEC
Q 046837 407 VIKYVKEEWKYSKKAIIVSVD 427 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~ 427 (658)
..+.+.|++++.|+++++.
T Consensus 62 --~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 62 --SSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred --HhHHhhcCCccccEEEEEc
Confidence 1345669999999999994
No 79
>PRK09381 trxA thioredoxin; Provisional
Probab=94.69 E-value=0.15 Score=44.99 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|+++|.+. ||++|. .+.|.++.++.. +++.+.-|-.. +..
T Consensus 21 ~~~vvv~f~~~-~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~-------~~~------------------------- 65 (109)
T PRK09381 21 DGAILVDFWAE-WCGPCKMIAPILDEIADEYQ--GKLTVAKLNID-------QNP------------------------- 65 (109)
T ss_pred CCeEEEEEECC-CCHHHHHHhHHHHHHHHHhC--CCcEEEEEECC-------CCh-------------------------
Confidence 67899999999 998765 678999998875 34444444331 111
Q ss_pred HHHHHHhhccCCceEEEEECCCCceec
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRILN 434 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~~ 434 (658)
.+.++|++++.|+++++ ++|+++.
T Consensus 66 --~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 66 --GTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred --hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 13356899999999999 6888763
No 80
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=94.55 E-value=0.14 Score=45.65 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=47.2
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+||.|++.|.+. ||++|. .+.+.++.++++ +.++.+.-|-+ | .+.
T Consensus 20 ~~k~vlv~f~a~-wC~~C~~~~~~~~~la~~~~-~~~~~~~~vd~-d------~~~------------------------ 66 (109)
T cd02993 20 RNQSTLVVLYAP-WCPFCQAMEASYEELAEKLA-GSNVKVAKFNA-D------GEQ------------------------ 66 (109)
T ss_pred cCCCEEEEEECC-CCHHHHHHhHHHHHHHHHhc-cCCeEEEEEEC-C------ccc------------------------
Confidence 378999999999 998765 456888887776 33455555443 1 000
Q ss_pred HHHHHHHhhccCCceEEEEECCCCc
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGR 431 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGk 431 (658)
....++.|++++.|+++++++.|+
T Consensus 67 -~~~~~~~~~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 67 -REFAKEELQLKSFPTILFFPKNSR 90 (109)
T ss_pred -hhhHHhhcCCCcCCEEEEEcCCCC
Confidence 112234589999999999988764
No 81
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=94.41 E-value=0.15 Score=44.68 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=47.5
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
||.|+|+|.+. ||++|. .+.+.++.++++ ..+.++.|-+. +++
T Consensus 18 ~~~~lv~f~a~-wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~-------~~~------------------------- 62 (109)
T cd03002 18 NYTTLVEFYAP-WCGHCKNLKPEYAKAAKELD--GLVQVAAVDCD-------EDK------------------------- 62 (109)
T ss_pred CCeEEEEEECC-CCHHHHhhChHHHHHHHHhc--CCceEEEEecC-------ccc-------------------------
Confidence 67799999999 997754 456777777764 44666665541 111
Q ss_pred HHHHHHhhccCCceEEEEECCCCc
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGR 431 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGk 431 (658)
.+.+.+.|++++.|+++++++.|+
T Consensus 63 ~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 NKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred cHHHHHHcCCCcCCEEEEEeCCCc
Confidence 123455699999999999998874
No 82
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=94.36 E-value=0.093 Score=60.62 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=48.9
Q ss_pred cCcEEEEEEecCCCCChHHHH--H-H--HHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837 329 KKKHVLLLISRPDDISQEEIL--F-L--SNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI 403 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~--~-L--~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i 403 (658)
+||.|.+.|.+. ||++|... . + .++.++++ + ++++-+ | |+++.+
T Consensus 473 ~gK~VlVdF~A~-WC~~Ck~~e~~~~~~~~v~~~l~---~--~~~v~v-D----vt~~~~-------------------- 521 (571)
T PRK00293 473 KGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQQALA---D--TVLLQA-D----VTANNA-------------------- 521 (571)
T ss_pred cCCcEEEEEECC-cCHhHHHHHHHhcCCHHHHHHhc---C--CEEEEE-E----CCCCCh--------------------
Confidence 379999999999 99887542 1 2 45555553 3 456655 2 333111
Q ss_pred cHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILN 434 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 434 (658)
..+.+.++|++.+.|+++++|++|+.++
T Consensus 522 ---~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 522 ---EDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred ---hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 1234556799999999999999999853
No 83
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=94.33 E-value=0.22 Score=41.58 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=45.2
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.++++|.+. ||++|. .+.+.++.+.++.+..+.++=|.. ++
T Consensus 15 ~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~------------------------- 59 (101)
T cd02961 15 SKDVLVEFYAP-WCGHCKALAPEYEKLAKELKGDGKVVVAKVDC---------TA------------------------- 59 (101)
T ss_pred CCcEEEEEECC-CCHHHHhhhHHHHHHHHHhccCCceEEEEeec---------cc-------------------------
Confidence 45899999999 997654 556888877775334444333332 11
Q ss_pred HHHHHHhhccCCceEEEEECCCC
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQG 430 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqG 430 (658)
...+.+.|++++.|++++++++|
T Consensus 60 ~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 60 NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred hHHHHHhCCCCCCCEEEEEcCCC
Confidence 12345568999999999999886
No 84
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.81 E-value=0.25 Score=43.05 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=44.7
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
++|.|+++|.+. ||++|. .+.+.++-++++ +. +.+.-+ | .++.
T Consensus 17 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~a~~~~--~~--~~~~~v-d----~~~~------------------------- 61 (101)
T cd03003 17 SGEIWFVNFYSP-RCSHCHDLAPTWREFAKEMD--GV--IRIGAV-N----CGDD------------------------- 61 (101)
T ss_pred CCCeEEEEEECC-CChHHHHhHHHHHHHHHHhc--Cc--eEEEEE-e----CCcc-------------------------
Confidence 468899999999 998765 556777766664 33 444444 1 0111
Q ss_pred HHHHHHHhhccCCceEEEEECCCCce
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
+.+.+.+++++.|+++++ ++|+.
T Consensus 62 --~~~~~~~~v~~~Pt~~~~-~~g~~ 84 (101)
T cd03003 62 --RMLCRSQGVNSYPSLYVF-PSGMN 84 (101)
T ss_pred --HHHHHHcCCCccCEEEEE-cCCCC
Confidence 124556899999999999 78864
No 85
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=93.73 E-value=0.22 Score=42.77 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
+|.|+++|.+. ||++| +.+.+.++.++++...+ +.++.++ -+++ +
T Consensus 18 ~~~~~v~f~a~-~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~id-------~~~~---------------~-------- 64 (105)
T cd02998 18 KKDVLVEFYAP-WCGHCKNLAPEYEKLAAVFANEDD--VVIAKVD-------ADEA---------------N-------- 64 (105)
T ss_pred CCcEEEEEECC-CCHHHHhhChHHHHHHHHhCCCCC--EEEEEEE-------CCCc---------------c--------
Confidence 56899999999 99765 45678888888763334 5555551 1110 1
Q ss_pred HHHHHHhhccCCceEEEEECCCCc
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGR 431 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGk 431 (658)
..+.+.|++++.|+++++++.|+
T Consensus 65 -~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 65 -KDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred -hhhHHhCCCCCcCEEEEEeCCCC
Confidence 13455689999999999998764
No 86
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=93.50 E-value=0.15 Score=47.44 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=44.1
Q ss_pred cCcEEEEEEecCCCCChHHHHHHHHHHHHhcCC-CCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 329 KKKHVLLLISRPDDISQEEILFLSNMYKDLKES-KECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~-~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
.+|.|.+.|+|. ||+||. .+..+++++.++ .+. +.|+-+ |. |+
T Consensus 13 ~~~~vVV~F~A~-WCgpCk--~m~P~le~la~~~~~~-v~f~kV-Dv------D~------------------------- 56 (114)
T cd02954 13 EEKVVVIRFGRD-WDPVCM--QMDEVLAKIAEDVSNF-AVIYLV-DI------DE------------------------- 56 (114)
T ss_pred CCCEEEEEEECC-CChhHH--HHHHHHHHHHHHccCc-eEEEEE-EC------CC-------------------------
Confidence 367899999999 999987 334444444322 111 334444 20 11
Q ss_pred HHHHHHhhccCCceEEEEECCCCceecc
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
..-|.++|+++++|+++++- +|+.+..
T Consensus 57 ~~~la~~~~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 57 VPDFNKMYELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence 11345669999999999997 6777644
No 87
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=93.46 E-value=0.21 Score=44.24 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=47.8
Q ss_pred CcEEEEEEecCCCCChH--HHHHHHHHHHHhcCC-C-CeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837 330 KKHVLLLISRPDDISQE--EILFLSNMYKDLKES-K-ECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP 405 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~-~-~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~ 405 (658)
++.|+++|.+. ||++| ..+.+.+++++++.+ . .-.+.|..++- ++
T Consensus 18 ~~~vlv~F~a~-wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~-------d~----------------------- 66 (108)
T cd02996 18 AELVLVNFYAD-WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDC-------DK----------------------- 66 (108)
T ss_pred CCEEEEEEECC-CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEEC-------CC-----------------------
Confidence 57899999999 99765 466788888887532 1 12466766620 11
Q ss_pred HHHHHHHHhhccCCceEEEEECCCCce
Q 046837 406 AVIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 406 ~~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
-+.+.+.|++++.|+++++ ++|+.
T Consensus 67 --~~~l~~~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 67 --ESDIADRYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred --CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence 1235566999999999999 67874
No 88
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=93.36 E-value=0.39 Score=40.62 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=45.0
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
+|.|.++|.+. ||+.|. .+.|.++.+++. ++..++.|-.. ++
T Consensus 14 ~~~vvi~f~~~-~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~-------~~-------------------------- 57 (101)
T TIGR01068 14 DKPVLVDFWAP-WCGPCKMIAPILEELAKEYE--GKVKFVKLNVD-------EN-------------------------- 57 (101)
T ss_pred CCcEEEEEECC-CCHHHHHhCHHHHHHHHHhc--CCeEEEEEECC-------CC--------------------------
Confidence 56899999999 997654 456777766653 34555555431 11
Q ss_pred HHHHHHhhccCCceEEEEECCCCcee
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
+.+.+.|++++.|+++++ ++|+++
T Consensus 58 -~~~~~~~~v~~~P~~~~~-~~g~~~ 81 (101)
T TIGR01068 58 -PDIAAKYGIRSIPTLLLF-KNGKEV 81 (101)
T ss_pred -HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence 123456899999999999 678754
No 89
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=92.92 E-value=0.52 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.2
Q ss_pred HHHhhccCCceEEEEECC-CCceec
Q 046837 411 VKEEWKYSKKAIIVSVDP-QGRILN 434 (658)
Q Consensus 411 ike~f~~~~iP~LVvL~p-qGkv~~ 434 (658)
+.+.+++.+.|+++++|| +|+++.
T Consensus 68 ~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 68 FLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred HHHHhCccCCCeEEEEeCccCcEeE
Confidence 455688999999999999 798875
No 90
>PTZ00102 disulphide isomerase; Provisional
Probab=92.91 E-value=0.2 Score=55.21 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=47.5
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
.||.|+|+|.|. ||++|. .+.+.++-++.+..+.+-+.+|-. +.++
T Consensus 374 ~~k~vlv~f~a~-wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~-------~~~~------------------------ 421 (477)
T PTZ00102 374 SDKDVLLEIYAP-WCGHCKNLEPVYNELGEKYKDNDSIIVAKMNG-------TANE------------------------ 421 (477)
T ss_pred CCCCEEEEEECC-CCHHHHHHHHHHHHHHHHhccCCcEEEEEEEC-------CCCc------------------------
Confidence 478899999999 997654 556777766665445565665543 1111
Q ss_pred HHHHHHHhhccCCceEEEEECCCCce
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
.+.+.|++++.|+++++++.|++
T Consensus 422 ---~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 422 ---TPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred ---cchhcCCCcccCeEEEEECCCcc
Confidence 01335888999999999987775
No 91
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.90 E-value=0.97 Score=43.42 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCcEEeccc-ccCcEEEEEEecCCCCC--hHH-HHHHHHHHHHhcCCCCe-eEEEEecccCCCcchhhHHHHHHhhcC-C
Q 046837 319 TRTTVQIHV-LKKKHVLLLISRPDDIS--QEE-ILFLSNMYKDLKESKEC-RIVWLPIVDGSIDRQQALDKFKNLQKR-M 392 (658)
Q Consensus 319 ~~~kV~Is~-L~gK~VlLyfSa~~~~~--~~~-~~~L~~iY~~lk~~~~f-EIVwIpivD~s~~W~dde~~F~~~~~~-M 392 (658)
+|..|.+++ ++||.|.|||--..||| ..+ +..|.+.|++++. .+. +|+=||.++ -...++|.+-..- .
T Consensus 17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~-~g~~~V~~iS~D~-----~~~~~~~~~~~~~~~ 90 (155)
T cd03013 17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA-KGVDEVICVSVND-----PFVMKAWGKALGAKD 90 (155)
T ss_pred CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH-CCCCEEEEEECCC-----HHHHHHHHHhhCCCC
Confidence 467899999 68987666666554775 567 7789999999964 356 699999732 1266667665543 1
Q ss_pred CceeecCCCCCcHHHHHHHHHhhccC------C-----ceEEEEECCCCceecc
Q 046837 393 PWYSIQDPAMIQPAVIKYVKEEWKYS------K-----KAIIVSVDPQGRILNQ 435 (658)
Q Consensus 393 PWyAVpf~~~i~~~~~r~ike~f~~~------~-----iP~LVvL~pqGkv~~~ 435 (658)
|+.-+--++ +.+.+.|++. + ....+|+| +|++...
T Consensus 91 ~f~lLsD~~-------~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 91 KIRFLADGN-------GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred cEEEEECCC-------HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 222222222 2333335541 1 46678889 6998753
No 92
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=92.71 E-value=0.4 Score=41.25 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=46.0
Q ss_pred cCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+++.++++|.+. ||++| ..+.+.++.++++.... ++++-+ | .+++ .+
T Consensus 16 ~~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~i-d----~~~~----------------~~------- 64 (104)
T cd02997 16 KEKHVLVMFYAP-WCGHCKKMKPEFTKAATELKEDGK--GVLAAV-D----CTKP----------------EH------- 64 (104)
T ss_pred hCCCEEEEEECC-CCHHHHHhCHHHHHHHHHHhhCCc--eEEEEE-E----CCCC----------------cc-------
Confidence 367899999999 99765 46678888887754333 455544 1 1111 01
Q ss_pred HHHHHHHhhccCCceEEEEECCCCcee
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
..+.+.+++++.|++++.. +|+++
T Consensus 65 --~~~~~~~~i~~~Pt~~~~~-~g~~~ 88 (104)
T cd02997 65 --DALKEEYNVKGFPTFKYFE-NGKFV 88 (104)
T ss_pred --HHHHHhCCCccccEEEEEe-CCCee
Confidence 1244568999999987764 77753
No 93
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=92.57 E-value=0.22 Score=47.43 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=58.4
Q ss_pred cCcEEEEEEecCCCCChHHHHH-----HHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837 329 KKKHVLLLISRPDDISQEEILF-----LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI 403 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~~-----L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i 403 (658)
+||.|+|+|.+. ||+.|.... =.++-+.++ ++| |.|.+.. +++| ...+ | +
T Consensus 22 ~~Kpvmv~f~sd-wC~~Ck~l~k~~f~~~eV~~~l~--~~F--v~V~l~~---d~td---------~~~~----~--~-- 76 (130)
T cd02960 22 SNKPLMVIHHLE-DCPHSQALKKAFAEHKEIQKLAQ--EDF--IMLNLVH---ETTD---------KNLS----P--D-- 76 (130)
T ss_pred CCCeEEEEEeCC-cCHhHHHHHHHhhCCHHHHHHHH--hCe--EEEEEEe---ccCC---------CCcC----c--c--
Confidence 389999999999 998765331 223333332 456 5566531 1121 0000 0 1
Q ss_pred cHHHHHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhh
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWK 461 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~ 461 (658)
+ .++|+++++||+|+++.+ +.--++...|-+.+++.+.|.+
T Consensus 77 ------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~ 117 (130)
T cd02960 77 ------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIE 117 (130)
T ss_pred ------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHH
Confidence 1 368999999999998764 3566788888888888887764
No 94
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.27 E-value=0.69 Score=40.14 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=43.2
Q ss_pred ccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837 328 LKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP 405 (658)
Q Consensus 328 L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~ 405 (658)
++|+ ++|+|.+. ||++|. .+.+.++.+..+ ...|.+..+ | .+++.
T Consensus 15 ~~~~-~lv~f~a~-wC~~C~~~~p~~~~l~~~~~---~~~v~~~~v-d----~~~~~----------------------- 61 (101)
T cd02994 15 LEGE-WMIEFYAP-WCPACQQLQPEWEEFADWSD---DLGINVAKV-D----VTQEP----------------------- 61 (101)
T ss_pred hCCC-EEEEEECC-CCHHHHHHhHHHHHHHHhhc---cCCeEEEEE-E----ccCCH-----------------------
Confidence 4565 67999999 998754 566777776543 223444444 1 01111
Q ss_pred HHHHHHHHhhccCCceEEEEECCCCce
Q 046837 406 AVIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 406 ~~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
.+.+.|++++.|+++++ ++|++
T Consensus 62 ----~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 62 ----GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred ----hHHHHcCCcccCEEEEe-CCCCE
Confidence 13456899999999886 88975
No 95
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=91.84 E-value=0.81 Score=41.17 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|.++|.+. ||++|.. +.|.++-++. .+ +.|+-+ | -++ .
T Consensus 24 ~~~vvv~F~a~-~c~~C~~l~~~l~~la~~~---~~--v~f~~v-d------~~~------------------------~ 66 (113)
T cd02957 24 GTRVVVHFYEP-GFPRCKILDSHLEELAAKY---PE--TKFVKI-N------AEK------------------------A 66 (113)
T ss_pred CCEEEEEEeCC-CCCcHHHHHHHHHHHHHHC---CC--cEEEEE-E------chh------------------------h
Confidence 57899999999 9988763 3455444443 22 445554 2 011 1
Q ss_pred HHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHH
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEA 458 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~ee 458 (658)
.|.+.|++++.|+++++. +|+.+. .-.+.....| ..|+.+.++.
T Consensus 67 --~l~~~~~i~~~Pt~~~f~-~G~~v~-~~~G~~~~~~---~~~~~~~l~~ 110 (113)
T cd02957 67 --FLVNYLDIKVLPTLLVYK-NGELID-NIVGFEELGG---DDFTTEDLEK 110 (113)
T ss_pred --HHHHhcCCCcCCEEEEEE-CCEEEE-EEecHHHhCC---CCCCHHHHHH
Confidence 456679999999999886 577663 2223444455 6777666654
No 96
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=91.79 E-value=0.3 Score=41.59 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=45.3
Q ss_pred CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
+|.|+++|.+. ||++|.. +.|.++-++... .|.|+-++- + .
T Consensus 17 ~~~vvv~f~~~-~C~~C~~~~~~~~~~~~~~~~----~v~~~~vd~------~--------------------~------ 59 (103)
T PF00085_consen 17 DKPVVVYFYAP-WCPPCKAFKPILEKLAKEYKD----NVKFAKVDC------D--------------------E------ 59 (103)
T ss_dssp SSEEEEEEEST-TSHHHHHHHHHHHHHHHHTTT----TSEEEEEET------T--------------------T------
T ss_pred CCCEEEEEeCC-CCCccccccceeccccccccc----ccccchhhh------h--------------------c------
Confidence 68999999999 9987654 457777666543 455555410 1 0
Q ss_pred HHHHHHhhccCCceEEEEECCCCcee
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
-+.+.+.|++++.|+++++...+.+.
T Consensus 60 ~~~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 60 NKELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred cchhhhccCCCCCCEEEEEECCcEEE
Confidence 12355669999999999997655443
No 97
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=91.75 E-value=0.8 Score=37.22 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=41.7
Q ss_pred cEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837 331 KHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI 408 (658)
Q Consensus 331 K~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~ 408 (658)
+.++|+|.+. ||+.|. .+.|.++.++ ..++.++.|... + .
T Consensus 11 ~~~ll~~~~~-~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~-------~---------------------------~ 52 (93)
T cd02947 11 KPVVVDFWAP-WCGPCKAIAPVLEELAEE---YPKVKFVKVDVD-------E---------------------------N 52 (93)
T ss_pred CcEEEEEECC-CChhHHHhhHHHHHHHHH---CCCceEEEEECC-------C---------------------------C
Confidence 7899999999 997754 3456666554 456666666641 1 1
Q ss_pred HHHHHhhccCCceEEEEECCCCc
Q 046837 409 KYVKEEWKYSKKAIIVSVDPQGR 431 (658)
Q Consensus 409 r~ike~f~~~~iP~LVvL~pqGk 431 (658)
+.+.+.|++.+.|+++++. +|+
T Consensus 53 ~~~~~~~~v~~~P~~~~~~-~g~ 74 (93)
T cd02947 53 PELAEEYGVRSIPTFLFFK-NGK 74 (93)
T ss_pred hhHHHhcCcccccEEEEEE-CCE
Confidence 1123458999999999995 555
No 98
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=91.33 E-value=0.65 Score=43.15 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=28.5
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEec
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPI 371 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpi 371 (658)
|+.+.+||++. |||+|. .|.|.++=++ .+.+|.+|-+
T Consensus 23 ~~~~iv~f~~~-~Cp~C~~~~P~l~~~~~~----~~~~~y~vdv 61 (122)
T TIGR01295 23 KETATFFIGRK-TCPYCRKFSGTLSGVVAQ----TKAPIYYIDS 61 (122)
T ss_pred CCcEEEEEECC-CChhHHHHhHHHHHHHHh----cCCcEEEEEC
Confidence 67899999999 998765 4567766554 4577888887
No 99
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=90.95 E-value=1.2 Score=38.36 Aligned_cols=63 Identities=10% Similarity=-0.017 Sum_probs=41.8
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|+|+|.+. ||++|. .+.+.++.++.+ +.+.+.-+-. ++
T Consensus 18 ~~~vlv~f~a~-~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~---------~~------------------------- 60 (103)
T cd03001 18 DDVWLVEFYAP-WCGHCKNLAPEWKKAAKALK--GIVKVGAVDA---------DV------------------------- 60 (103)
T ss_pred CCcEEEEEECC-CCHHHHHHhHHHHHHHHHhc--CCceEEEEEC---------cc-------------------------
Confidence 45699999999 997654 567877777764 2333333221 11
Q ss_pred HHHHHHhhccCCceEEEEECCC
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQ 429 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pq 429 (658)
...+.+.|++++.|+++++++.
T Consensus 61 ~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 61 HQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred hHHHHHHCCCCccCEEEEECCC
Confidence 1234567899999999999755
No 100
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=90.86 E-value=1.2 Score=38.80 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=42.6
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|+++|.+. ||++|. .+.+.++-++.+ +. +.+.-+ |- + .
T Consensus 19 ~~~v~v~f~a~-wC~~C~~~~p~~~~~~~~~~--~~--~~~~~v-d~------~-------------------~------ 61 (104)
T cd03004 19 KEPWLVDFYAP-WCGPCQALLPELRKAARALK--GK--VKVGSV-DC------Q-------------------K------ 61 (104)
T ss_pred CCeEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CC--cEEEEE-EC------C-------------------c------
Confidence 56899999999 998764 445555555542 23 344443 10 1 0
Q ss_pred HHHHHHhhccCCceEEEEECCCCce
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
.+.+.+.|++++.|+++++.+.|+.
T Consensus 62 ~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 62 YESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred hHHHHHHcCCCcccEEEEEcCCCCC
Confidence 1234566899999999999877443
No 101
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=90.54 E-value=0.54 Score=42.79 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=39.9
Q ss_pred CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|.++|++. ||++|.. +.|.++-.+. +..+++.|-+ ++ +
T Consensus 22 ~~~vvv~f~a~-wC~~C~~~~~~l~~la~~~---~~i~~~~vd~---------d~--~---------------------- 64 (113)
T cd02975 22 PVDLVVFSSKE-GCQYCEVTKQLLEELSELS---DKLKLEIYDF---------DE--D---------------------- 64 (113)
T ss_pred CeEEEEEeCCC-CCCChHHHHHHHHHHHHhc---CceEEEEEeC---------Cc--C----------------------
Confidence 45688999999 9988763 3455554332 3344444433 11 0
Q ss_pred HHHHHHhhccCCceEEEEECCC
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQ 429 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pq 429 (658)
+.+.+.|++++.|++++++..
T Consensus 65 -~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 65 -KEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred -HHHHHHcCCCcCCEEEEEeCC
Confidence 124566999999999999753
No 102
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=89.75 E-value=2.5 Score=44.87 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=45.4
Q ss_pred ccCCCCcEEecccccCcEEEEEEecCCCC---ChHHHHHHHHHHHHhcCCCCee--EEEEecc
Q 046837 315 VDGETRTTVQIHVLKKKHVLLLISRPDDI---SQEEILFLSNMYKDLKESKECR--IVWLPIV 372 (658)
Q Consensus 315 ~~g~~~~kV~Is~L~gK~VlLyfSa~~~~---~~~~~~~L~~iY~~lk~~~~fE--IVwIpiv 372 (658)
+...+|+.|.-.+|.||-+++||.=. -| ||||+-.|.++-+++..+..-. =|||+++
T Consensus 124 L~d~~Gk~~te~df~Gkw~LiYFGFT-hCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD 185 (280)
T KOG2792|consen 124 LVDHDGKRVTEKDFLGKWSLIYFGFT-HCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD 185 (280)
T ss_pred EEecCCCeecccccccceEEEEeccc-CCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC
Confidence 34446667899999999999999987 66 6899999999999997642222 6899984
No 103
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=89.60 E-value=1.8 Score=39.40 Aligned_cols=75 Identities=11% Similarity=0.048 Sum_probs=46.4
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
+|.|+++|.+. ||++|. .+.+.++.++++... ..|-+..+| -+.+.
T Consensus 19 ~~~vvV~f~a~-wC~~C~~~~~~~~~la~~~~~~~--~~v~~~~vd------~~~~~----------------------- 66 (114)
T cd02992 19 PSAWLVEFYAS-WCGHCRAFAPTWKKLARDLRKWR--PVVRVAAVD------CADEE----------------------- 66 (114)
T ss_pred CCeEEEEEECC-CCHHHHHHhHHHHHHHHHHHhcC--CceEEEEEe------ccchh-----------------------
Confidence 47899999999 998754 566888877775322 122223222 11111
Q ss_pred HHHHHHhhccCCceEEEEECCCCceeccch
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNA 437 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA 437 (658)
.+.+.+.|++++.|+++++.+.+ ....+|
T Consensus 67 ~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~ 95 (114)
T cd02992 67 NVALCRDFGVTGYPTLRYFPPFS-KEATDG 95 (114)
T ss_pred hHHHHHhCCCCCCCEEEEECCCC-ccCCCC
Confidence 12334569999999999996544 444444
No 104
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=89.37 E-value=1.4 Score=43.60 Aligned_cols=86 Identities=14% Similarity=0.131 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|.++|.+. ||++|.. +.|.++-.+. . ++.|+-| | -++ .
T Consensus 83 ~~~VVV~Fya~-wc~~Ck~m~~~l~~LA~~~---~--~vkF~kV-d------~d~-----------------------~- 125 (175)
T cd02987 83 DTTVVVHIYEP-GIPGCAALNSSLLCLAAEY---P--AVKFCKI-R------ASA-----------------------T- 125 (175)
T ss_pred CcEEEEEEECC-CCchHHHHHHHHHHHHHHC---C--CeEEEEE-e------ccc-----------------------h-
Confidence 35899999999 9999873 2344444332 2 4778877 1 011 0
Q ss_pred HHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHh
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEAL 459 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL 459 (658)
.+.+.|+++.+|+++++- +|+.+.. -.+ ....|.. -|+.+++|..
T Consensus 126 --~l~~~f~v~~vPTlllyk-~G~~v~~-~vG-~~~~~g~--~f~~~~le~~ 170 (175)
T cd02987 126 --GASDEFDTDALPALLVYK-GGELIGN-FVR-VTEDLGE--DFDAEDLESF 170 (175)
T ss_pred --hhHHhCCCCCCCEEEEEE-CCEEEEE-Eec-hHHhcCC--CCCHHHHHHH
Confidence 345669999999999986 5777642 122 1234444 6777776654
No 105
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=88.93 E-value=1.1 Score=40.76 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=43.3
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.|.++|.+. ||++|. -+.|.++-++. .+ +.|+-+ |. ++
T Consensus 22 ~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~---~~--i~f~~V-d~------~~------------------------- 63 (113)
T cd02989 22 SERVVCHFYHP-EFFRCKIMDKHLEILAKKH---LE--TKFIKV-NA------EK------------------------- 63 (113)
T ss_pred CCcEEEEEECC-CCccHHHHHHHHHHHHHHc---CC--CEEEEE-Ec------cc-------------------------
Confidence 46899999999 998876 34555554443 22 445554 10 11
Q ss_pred HHHHHHhhccCCceEEEEECCCCcee
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
...|.+.|+++++|+++++. +|+.+
T Consensus 64 ~~~l~~~~~v~~vPt~l~fk-~G~~v 88 (113)
T cd02989 64 APFLVEKLNIKVLPTVILFK-NGKTV 88 (113)
T ss_pred CHHHHHHCCCccCCEEEEEE-CCEEE
Confidence 12355779999999999987 67766
No 106
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=88.43 E-value=0.95 Score=41.61 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=43.5
Q ss_pred cccCC-ChhhhhhhcCCcEEEEEccCCchHH---HHHHHHHHHHHhhcC---CceeEEEeeccChhhHHHHhhc
Q 046837 470 LVGDI-DATILEWMKEERFICLYGGNDEAWI---RKFRNSAKDVASKAQ---INWGMAYVGKKNAKKRLEEISS 536 (658)
Q Consensus 470 Lv~~i-d~~I~~~i~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~---~~~E~v~Vgkdn~~e~v~~~~~ 536 (658)
|+|+- ...+.++ .||.+.|||.+ .|| ++..+.+.+++++.+ ..+++++|+-|...+.+++-++
T Consensus 3 ~~~~~~~v~l~~~--~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~ 72 (132)
T cd02964 3 LLDGEGVVPVSAL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFS 72 (132)
T ss_pred cccCCccccHHHh--CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHh
Confidence 33443 2344554 89999999998 666 777788887766422 4799999998866555555544
No 107
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=87.81 E-value=0.71 Score=42.89 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=37.2
Q ss_pred hhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 480 EWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 480 ~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
+.++.|+++.+|||+.+ .|||.|.+.+.+++++ ....++||..|.
T Consensus 18 ~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~ 63 (122)
T TIGR01295 18 EALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSEN 63 (122)
T ss_pred HHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCC
Confidence 44678999999999964 7789999999999876 456789998873
No 108
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=86.79 E-value=1.8 Score=44.64 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=46.0
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.++++|.+. ||++|. .+.+.++.++++. . |.+.-+ | . ++.
T Consensus 52 ~~~vlV~FyAp-WC~~Ck~~~P~~e~la~~~~~--~--v~~~~V-D----~--~~~------------------------ 95 (224)
T PTZ00443 52 TGPWFVKFYAP-WCSHCRKMAPAWERLAKALKG--Q--VNVADL-D----A--TRA------------------------ 95 (224)
T ss_pred CCCEEEEEECC-CChHHHHHHHHHHHHHHHcCC--C--eEEEEe-c----C--ccc------------------------
Confidence 46899999999 998764 5678888877752 2 333333 2 1 110
Q ss_pred HHHHHHhhccCCceEEEEECCCCcee
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
..+.++|++++.|++++++ +|+++
T Consensus 96 -~~l~~~~~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 96 -LNLAKRFAIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred -HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence 1355679999999999998 78765
No 109
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=86.00 E-value=1.4 Score=42.93 Aligned_cols=39 Identities=3% Similarity=-0.077 Sum_probs=26.3
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEe
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLP 370 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIp 370 (658)
++.|+++|.+. ||++|. .+.|.++.++.. ..++.++-|-
T Consensus 47 ~~~vvV~Fya~-wC~~Ck~l~p~l~~la~~~~-~~~v~f~~VD 87 (152)
T cd02962 47 RVTWLVEFFTT-WSPECVNFAPVFAELSLKYN-NNNLKFGKID 87 (152)
T ss_pred CCEEEEEEECC-CCHHHHHHHHHHHHHHHHcc-cCCeEEEEEE
Confidence 57899999999 998865 456776666553 2235545444
No 110
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=85.94 E-value=3 Score=42.46 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=69.9
Q ss_pred cEEecccccCcEEEEEEecCCCC---ChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchh-hHHHHHHhhcCCCcee
Q 046837 321 TTVQIHVLKKKHVLLLISRPDDI---SQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMPWYS 396 (658)
Q Consensus 321 ~kV~Is~L~gK~VlLyfSa~~~~---~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~d-de~~F~~~~~~MPWyA 396 (658)
.+|..++..||.+.|||=-. |. ||-|+..+.+.|++.+ +.+-||+-||++. . ...+..+.-.+-.=+.
T Consensus 24 ~~i~l~d~~gkw~VLff~P~-DFTfVCpTEi~af~~~y~eF~-~~g~eVigvS~Ds------~fsH~aW~~~~~~~~gi~ 95 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPA-DFTFVCPTEIIAFAKRYEEFQ-KRGVEVIGVSTDS------VFSHKAWKATIREAGGIG 95 (194)
T ss_pred eEEechhhcCcEEEEEeccC-CCCccCcchHHHHHhhhHHHH-HcCCEEEEEecCc------HHHHHHHHhcHHhcCCcc
Confidence 47999999999999999888 73 7888889999999986 5679999999832 2 3444433311111111
Q ss_pred -ecCCCCCcHHHHHHHHHhhccCC------ceEEEEECCCCcee
Q 046837 397 -IQDPAMIQPAVIKYVKEEWKYSK------KAIIVSVDPQGRIL 433 (658)
Q Consensus 397 -Vpf~~~i~~~~~r~ike~f~~~~------iP~LVvL~pqGkv~ 433 (658)
|+||=.- ...+.|.+.|++-. .=.+.|+||+|++-
T Consensus 96 ~i~~Pmia--D~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir 137 (194)
T COG0450 96 KIKFPMIA--DPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIR 137 (194)
T ss_pred ceecceEE--cCchhHHHHcCCcccCCCcceeEEEEECCCCeEE
Confidence 4554321 23456677788753 23578999999874
No 111
>smart00594 UAS UAS domain.
Probab=85.69 E-value=2.8 Score=38.60 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=41.8
Q ss_pred cCcEEEEEEecCCCCChHHHHH-----HHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837 329 KKKHVLLLISRPDDISQEEILF-----LSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI 403 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~~-----L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i 403 (658)
+||.+++||.+. ||+.+.... =.++-+-++ ++ .|.+.. | +++.+
T Consensus 26 ~~K~~lv~~~~~-~c~~c~~~~r~vl~~~~V~~~i~--~~--fv~~~~-d----v~~~e--------------------- 74 (122)
T smart00594 26 QRRLLWLYLHSQ-DSPDSQVFNRDVLCNEAVKSLIR--EN--FIFWQV-D----VDTSE--------------------- 74 (122)
T ss_pred hcCCEEEEEeCC-CCchHHHHHHHHccCHHHHHHHH--cC--EEEEEe-c----CCChh---------------------
Confidence 489999999999 998654331 122222232 22 444443 1 11211
Q ss_pred cHHHHHHHHHhhccCCceEEEEECCCC
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVDPQG 430 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~pqG 430 (658)
+ ..+.+.+++.+-|+++++||+|
T Consensus 75 ---g-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 ---G-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred ---H-HHHHHhcCcCCCCEEEEEecCC
Confidence 2 3456668999999999999997
No 112
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=85.66 E-value=1.5 Score=39.84 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=43.1
Q ss_pred CCChhhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc---CCceeEEEeeccChhhHHHHhhc
Q 046837 473 DIDATILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA---QINWGMAYVGKKNAKKRLEEISS 536 (658)
Q Consensus 473 ~id~~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~---~~~~E~v~Vgkdn~~e~v~~~~~ 536 (658)
|-...+.+. .||++.|||.+. -..|++..+.+.+++++. +..+++++|+-|...+.+++-.+
T Consensus 8 G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 73 (131)
T cd03009 8 GGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFS 73 (131)
T ss_pred CCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHH
Confidence 334445554 899999999883 233488888887776542 34799999999977666655443
No 113
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=85.63 E-value=2.3 Score=39.93 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=57.5
Q ss_pred hcCCcEEEEEccCCc-hHHHHHHHHH---HHHHhhcCCceeEEEeeccChhhHHHHhhcccccccccccccCcchhhHHH
Q 046837 482 MKEERFICLYGGNDE-AWIRKFRNSA---KDVASKAQINWGMAYVGKKNAKKRLEEISSSITKTESSHIVIDATKMWFFW 557 (658)
Q Consensus 482 i~egK~I~LYgg~d~-~Wir~FT~~~---~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~~~i~~e~ls~~~~d~t~v~~FW 557 (658)
.++||.|+|++|+|+ .||+.+.... .+|++..+..|..|.|..+.. |..-..
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~----------------------~~~~~~-- 67 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER----------------------PDVDKI-- 67 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC----------------------cHHHHH--
Confidence 569999999999974 7788776422 356655566888888866521 111100
Q ss_pred HHHHHHHHHHHhcCCCC--ccceeccccchHHHHHHhhccchhhhhhccHHHHH
Q 046837 558 ARLERMLYWKLQHGMGK--TQETARAKGTAAIDCMEKFHEWQDDALRNGFIQAL 609 (658)
Q Consensus 558 ~rlesm~~sK~q~~~~G--s~~~~~g~G~~~~~~l~~f~~Wk~~v~~kGF~~Af 609 (658)
-+-.-+.+.|..| ..+++..+|..+..+ -|--+.++..+.||-.-|
T Consensus 68 ----~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~--~~~~~~~~~~~~~~~~~~ 115 (124)
T cd02955 68 ----YMNAAQAMTGQGGWPLNVFLTPDLKPFFGG--TYFPPEDRYGRPGFKTVL 115 (124)
T ss_pred ----HHHHHHHhcCCCCCCEEEEECCCCCEEeee--eecCCCCcCCCcCHHHHH
Confidence 0101112346666 337777888877776 333345555556655433
No 114
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=85.42 E-value=4.6 Score=34.50 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEec
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPI 371 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpi 371 (658)
+|.|+|+|.+. ||++|. .+.+.++.+.++...+ +.+..+
T Consensus 18 ~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~i 58 (104)
T cd02995 18 DKDVLVEFYAP-WCGHCKALAPIYEELAEKLKGDDN--VVIAKM 58 (104)
T ss_pred CCcEEEEEECC-CCHHHHHHhhHHHHHHHHhcCCCC--EEEEEE
Confidence 57899999999 997654 5678888777754333 455554
No 115
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=85.10 E-value=4.5 Score=34.88 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=42.7
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
|+.++++|.+. ||+++. .+.|.++=++.+ +++.++||-. | + |.
T Consensus 12 ~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~--------~-~--~~--------------------- 56 (103)
T cd02982 12 GKPLLVLFYNK-DDSESEELRERFKEVAKKFK--GKLLFVVVDA--------D-D--FG--------------------- 56 (103)
T ss_pred CCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhC--CeEEEEEEch--------H-h--hH---------------------
Confidence 78999999999 996543 345665555554 5677777664 1 1 11
Q ss_pred HHHHHHhhccC--CceEEEEECC
Q 046837 408 IKYVKEEWKYS--KKAIIVSVDP 428 (658)
Q Consensus 408 ~r~ike~f~~~--~iP~LVvL~p 428 (658)
.+.+.|+++ +.|++++++.
T Consensus 57 --~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 57 --RHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred --HHHHHcCCChhhCCEEEEEec
Confidence 134458888 9999999987
No 116
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=85.09 E-value=4.4 Score=33.42 Aligned_cols=34 Identities=9% Similarity=0.218 Sum_probs=23.2
Q ss_pred EEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEec
Q 046837 335 LLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPI 371 (658)
Q Consensus 335 LyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpi 371 (658)
.+|++. ||+.|. .+.|.++.++.+ .+++++.|-+
T Consensus 4 ~~f~~~-~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~ 39 (82)
T TIGR00411 4 ELFTSP-TCPYCPAAKRVVEEVAKEMG--DAVEVEYINV 39 (82)
T ss_pred EEEECC-CCcchHHHHHHHHHHHHHhc--CceEEEEEeC
Confidence 466778 998765 567888877764 4466666664
No 117
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=84.83 E-value=3.5 Score=36.29 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=42.9
Q ss_pred cccccCcEEEEEEecCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837 325 IHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI 403 (658)
Q Consensus 325 Is~L~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i 403 (658)
+..|++..-..+|.+. ||+.|.. +.++.+++.+ ..++++..+-+. + +
T Consensus 7 ~~~l~~pv~i~~F~~~-~C~~C~~--~~~~~~~l~~~~~~i~~~~vd~~-------~----~------------------ 54 (89)
T cd03026 7 IRRLNGPINFETYVSL-SCHNCPD--VVQALNLMAVLNPNIEHEMIDGA-------L----F------------------ 54 (89)
T ss_pred HHhcCCCEEEEEEECC-CCCCcHH--HHHHHHHHHHHCCCceEEEEEhH-------h----C------------------
Confidence 3468888877778888 9987652 2334455432 234444444431 1 1
Q ss_pred cHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
..+.++|++.++|++|+ +|+++..
T Consensus 55 -----~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 55 -----QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred -----HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 12233589999999986 6877663
No 118
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=84.20 E-value=5.2 Score=37.27 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=43.0
Q ss_pred CcEEEEEEecCCC--CChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcH
Q 046837 330 KKHVLLLISRPDD--ISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQP 405 (658)
Q Consensus 330 gK~VlLyfSa~~~--~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~ 405 (658)
|..+.|+|++. | ||+|. -+.|.++=++.. +...++-|=+ |+ +
T Consensus 27 ~~~~v~~f~~~-~~~cp~c~~i~P~leela~e~~--~~v~f~kVdi--------d~----------------------~- 72 (111)
T cd02965 27 GGDLVLLLAGD-PVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGR--------AD----------------------E- 72 (111)
T ss_pred CCCEEEEecCC-cccCcchhhhHhHHHHHHHHCC--CcEEEEEEEC--------CC----------------------C-
Confidence 45688899999 6 98754 345666555442 3344444433 11 1
Q ss_pred HHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 406 AVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 406 ~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
..|.++|+++++|+|+++. +|+.+..
T Consensus 73 ---~~la~~f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 73 ---QALAARFGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred ---HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence 1455669999999999986 6776643
No 119
>PTZ00062 glutaredoxin; Provisional
Probab=84.00 E-value=2 Score=43.80 Aligned_cols=127 Identities=13% Similarity=0.208 Sum_probs=71.1
Q ss_pred cEEEEEEecCCCCChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHH
Q 046837 331 KHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKY 410 (658)
Q Consensus 331 K~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~ 410 (658)
+.+.|||.|. ||++|. .+..+.++|.++ --+|.|+.+ | .+
T Consensus 18 g~~vl~f~a~-w~~~C~--~m~~vl~~l~~~-~~~~~F~~V-~------~d----------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSS-KEPEYE--QLMDVCNALVED-FPSLEFYVV-N------LA----------------------------- 57 (204)
T ss_pred CcEEEEEeCC-CCcchH--HHHHHHHHHHHH-CCCcEEEEE-c------cc-----------------------------
Confidence 4578999999 999986 344555555321 124778876 1 01
Q ss_pred HHHhhccCCceEEEEECCCCcee----ccchHHHHH---HhCCccccCChhhHHHhhhcCCCchhhcccCCChhhhhhhc
Q 046837 411 VKEEWKYSKKAIIVSVDPQGRIL----NQNAFHTLW---IWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMK 483 (658)
Q Consensus 411 ike~f~~~~iP~LVvL~pqGkv~----~~nA~~mI~---~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~ 483 (658)
|++.++|++|++. +|+.+ ..|+..+.. .|-.. .. . + .+...+.++|+
T Consensus 58 ----~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~-----------~----~~~~~v~~li~ 111 (204)
T PTZ00062 58 ----DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-S-----------E----DTVEKIERLIR 111 (204)
T ss_pred ----cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-H-----------H----HHHHHHHHHHh
Confidence 8999999999995 55554 445544321 11110 00 0 0 11223444454
Q ss_pred CCcEEEEE--ccCCchHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 484 EERFICLY--GGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 484 egK~I~LY--gg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
. +-|.|| |.....||. |..++..+-+..+++++.+-|.+|
T Consensus 112 ~-~~Vvvf~Kg~~~~p~C~-~C~~~k~~L~~~~i~y~~~DI~~d 153 (204)
T PTZ00062 112 N-HKILLFMKGSKTFPFCR-FSNAVVNMLNSSGVKYETYNIFED 153 (204)
T ss_pred c-CCEEEEEccCCCCCCCh-hHHHHHHHHHHcCCCEEEEEcCCC
Confidence 4 344444 433435563 334455554555899998877755
No 120
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=83.32 E-value=3.5 Score=38.00 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=43.3
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+++.|++.|.|. ||++|. .+.+.++-++++ +. +.++-+ |- | + +.
T Consensus 28 ~~~~vlV~FyA~-WC~~Ck~l~p~~~~la~~~~--~~--v~~~~V-d~-----d-~---------------------~~- 73 (113)
T cd03006 28 DAEVSLVMYYAP-WDAQSQAARQEFEQVAQKLS--DQ--VLFVAI-NC-----W-W---------------------PQ- 73 (113)
T ss_pred CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHhc--CC--eEEEEE-EC-----C-C---------------------Ch-
Confidence 467899999999 998765 455666666664 22 556665 21 1 0 01
Q ss_pred HHHHHHHhhccCCceEEEEECCCCc
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGR 431 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGk 431 (658)
...++++++++.|++.++ .+|+
T Consensus 74 --~l~~~~~~I~~~PTl~lf-~~g~ 95 (113)
T cd03006 74 --GKCRKQKHFFYFPVIHLY-YRSR 95 (113)
T ss_pred --HHHHHhcCCcccCEEEEE-ECCc
Confidence 112345899999999999 5665
No 121
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=83.28 E-value=4.6 Score=37.38 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=44.1
Q ss_pred CCCcEEecccccCcEEEEEEecCCCCCh-HHHHHHHHHHHHhcCCCCeeEEEEecc
Q 046837 318 ETRTTVQIHVLKKKHVLLLISRPDDISQ-EEILFLSNMYKDLKESKECRIVWLPIV 372 (658)
Q Consensus 318 ~~~~kV~Is~L~gK~VlLyfSa~~~~~~-~~~~~L~~iY~~lk~~~~fEIVwIpiv 372 (658)
.+|+.|+++.++||.+++.=-|. -|.- .....|.++|++.+. ..|+|+-.|..
T Consensus 9 ~~G~~v~l~~y~Gkv~LIVNvAs-~Cg~t~qy~~L~~L~~ky~~-~gl~ILaFPcn 62 (108)
T PF00255_consen 9 IDGKPVSLSKYKGKVLLIVNVAS-KCGYTKQYKQLNELYEKYKD-KGLEILAFPCN 62 (108)
T ss_dssp TTSSEEEGGGGTTSEEEEEEEES-SSTTHHHHHHHHHHHHHHGG-GTEEEEEEEBS
T ss_pred CCCCEECHHHcCCCEEEEEeccc-ccCCccccHHHHHHHHHHhc-CCeEEEeeehH
Confidence 36788999999999999988888 8863 355579999999874 46999999984
No 122
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=81.70 E-value=3 Score=39.60 Aligned_cols=45 Identities=4% Similarity=-0.105 Sum_probs=35.8
Q ss_pred hhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 481 WMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 481 ~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
-+..||.+.|||.+.+ .+|+.+.+.+.++++..+..+.++.|.-|
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd 61 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVD 61 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcC
Confidence 3569999999999953 56699999999998775556778887665
No 123
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=81.57 E-value=4.1 Score=37.40 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=46.9
Q ss_pred CcEEEEEEecCCCCChHHHHHHHHHHHHhcC-CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHH
Q 046837 330 KKHVLLLISRPDDISQEEILFLSNMYKDLKE-SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVI 408 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~-~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~ 408 (658)
+|-|.+.|+|. ||+||.. +...|++|.. ..+ ++|+=+ | -|+ .
T Consensus 21 ~kliVvdF~a~-wCgPCk~--i~P~~~~La~~y~~--v~Flkv-d------vde-------------------------~ 63 (106)
T KOG0907|consen 21 DKLVVVDFYAT-WCGPCKA--IAPKFEKLAEKYPD--VVFLKV-D------VDE-------------------------L 63 (106)
T ss_pred CCeEEEEEECC-CCcchhh--hhhHHHHHHHHCCC--CEEEEE-e------ccc-------------------------C
Confidence 68899999999 9999864 3456666643 244 666554 1 021 3
Q ss_pred HHHHHhhccCCceEEEEECC---CCceeccchH
Q 046837 409 KYVKEEWKYSKKAIIVSVDP---QGRILNQNAF 438 (658)
Q Consensus 409 r~ike~f~~~~iP~LVvL~p---qGkv~~~nA~ 438 (658)
+-+.+.|+++..|+++.+-. .|+++-.|..
T Consensus 64 ~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 64 EEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred HhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 33455699999999999942 2455544444
No 124
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=81.55 E-value=1.5 Score=40.97 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=19.3
Q ss_pred HHHHhhccCCceEEEEECCCCceec
Q 046837 410 YVKEEWKYSKKAIIVSVDPQGRILN 434 (658)
Q Consensus 410 ~ike~f~~~~iP~LVvL~pqGkv~~ 434 (658)
.|.++|+++++|+|+++. +|+.+.
T Consensus 78 ~La~~~~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 78 KVAKKLGLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred HHHHHcCCccccEEEEEE-CCEEEE
Confidence 345569999999999995 888664
No 125
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=81.22 E-value=8.3 Score=27.89 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=39.3
Q ss_pred EEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHHHH
Q 046837 335 LLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVK 412 (658)
Q Consensus 335 LyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~ik 412 (658)
++|.+. ||+.+. ...+.++ . ....++.++++++.+ . .+...+ .
T Consensus 2 ~~~~~~-~c~~c~~~~~~~~~~-~--~~~~~~~~~~~~~~~----~-~~~~~~--------------------------~ 46 (69)
T cd01659 2 VLFYAP-WCPFCQALRPVLAEL-A--LLNKGVKFEAVDVDE----D-PALEKE--------------------------L 46 (69)
T ss_pred EEEECC-CChhHHhhhhHHHHH-H--hhCCCcEEEEEEcCC----C-hHHhhH--------------------------H
Confidence 567788 887654 3456665 2 234789999999732 1 111112 4
Q ss_pred HhhccCCceEEEEECCC
Q 046837 413 EEWKYSKKAIIVSVDPQ 429 (658)
Q Consensus 413 e~f~~~~iP~LVvL~pq 429 (658)
..+++...|.+++.+++
T Consensus 47 ~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 47 KRYGVGGVPTLVVFGPG 63 (69)
T ss_pred HhCCCccccEEEEEeCC
Confidence 45888899999999887
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=81.16 E-value=2.9 Score=46.21 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=48.8
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
+++.++++|-+. ||++|. .+.+.++.++++.. ...|++..+ |- ++
T Consensus 48 ~~~~~lv~f~a~-wC~~Ck~~~p~~~~~a~~~~~~-~~~i~~~~v-d~------~~------------------------ 94 (477)
T PTZ00102 48 ENEIVLVKFYAP-WCGHCKRLAPEYKKAAKMLKEK-KSEIVLASV-DA------TE------------------------ 94 (477)
T ss_pred cCCcEEEEEECC-CCHHHHHhhHHHHHHHHHHHhc-CCcEEEEEE-EC------CC------------------------
Confidence 367899999999 998765 45577777776532 346888886 21 11
Q ss_pred HHHHHHHhhccCCceEEEEECCCCce
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
-+.+.++|++++.|+++++.+.+.+
T Consensus 95 -~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 95 -EMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred -CHHHHHhcCCCcccEEEEEECCceE
Confidence 1235566999999999999876554
No 127
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=80.47 E-value=2.3 Score=40.14 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=39.7
Q ss_pred cccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837 327 VLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ 404 (658)
Q Consensus 327 ~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~ 404 (658)
.+.++.-.|.|... |||. .++|.|.++=+.. .+.++=+|+- +++.+-.+.
T Consensus 38 ~~~~~~~ilvi~e~-WCgD~~~~vP~l~kiae~~---p~i~~~~i~r-------d~~~el~~~----------------- 89 (129)
T PF14595_consen 38 SIQKPYNILVITET-WCGDCARNVPVLAKIAEAN---PNIEVRIILR-------DENKELMDQ----------------- 89 (129)
T ss_dssp T--S-EEEEEE--T-T-HHHHHHHHHHHHHHHH----TTEEEEEE-H-------HHHHHHTTT-----------------
T ss_pred hcCCCcEEEEEECC-CchhHHHHHHHHHHHHHhC---CCCeEEEEEe-------cCChhHHHH-----------------
Confidence 45567788999999 9976 5678888887764 4677777774 223322221
Q ss_pred HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837 405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
|+. .+.+.||++|++|.+|+++
T Consensus 90 -----~lt--~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 90 -----YLT--NGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp -----TTT---SS--SSEEEEE-TT--EE
T ss_pred -----HHh--CCCeecCEEEEEcCCCCEe
Confidence 111 5667799999999999986
No 128
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=78.83 E-value=25 Score=38.26 Aligned_cols=43 Identities=9% Similarity=-0.040 Sum_probs=31.9
Q ss_pred cCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCC---ceeEEEeecc
Q 046837 483 KEERFICLYGGNDE-AWIRKFRNSAKDVASKAQI---NWGMAYVGKK 525 (658)
Q Consensus 483 ~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~---~~E~v~Vgkd 525 (658)
..|+.+++||.+.+ ..|+.|.+.+.++++..+. .+-++.+..+
T Consensus 362 ~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~ 408 (462)
T TIGR01130 362 DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDAT 408 (462)
T ss_pred cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECC
Confidence 37899999999942 4448999999999876443 5777777655
No 129
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=78.69 E-value=1.3 Score=32.98 Aligned_cols=30 Identities=17% Similarity=0.484 Sum_probs=21.4
Q ss_pred Cccc-eeccCCCCCCCceeeCCCCCcccceee
Q 046837 621 HCNR-LILAGVNGAIPGTVQCADCGRDMEMFF 651 (658)
Q Consensus 621 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~v 651 (658)
.|.+ +++....+. ++.+.||+||..+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~r~~ 40 (41)
T smart00834 10 DCGHTFEVLQKISD-DPLATCPECGGDVRRLI 40 (41)
T ss_pred CCCCEEEEEEecCC-CCCCCCCCCCCcceecc
Confidence 4666 555543444 88999999999887754
No 130
>PF13728 TraF: F plasmid transfer operon protein
Probab=76.48 E-value=8.8 Score=39.30 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=55.5
Q ss_pred ecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCC
Q 046837 324 QIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPA 401 (658)
Q Consensus 324 ~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~ 401 (658)
-|..+.++.=++||-.. +|+- .+.++|..+=++ -.|+|+-||++. ..+| ++|.+-
T Consensus 114 ~l~~la~~~gL~~F~~~-~C~~C~~~~pil~~~~~~----yg~~v~~vs~DG----------------~~~~--~fp~~~ 170 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRS-DCPYCQQQAPILQQFADK----YGFSVIPVSLDG----------------RPIP--SFPNPR 170 (215)
T ss_pred HHHHHhhCeEEEEEEcC-CCchhHHHHHHHHHHHHH----hCCEEEEEecCC----------------CCCc--CCCCCC
Confidence 45567777777788888 8864 455566665554 469999999832 1233 222221
Q ss_pred CCcHHHHHHHHHhhccCCceEEEEECCCCceeccch
Q 046837 402 MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNA 437 (658)
Q Consensus 402 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA 437 (658)
.+. -+.+.|++...|.|++++|+++...+=|
T Consensus 171 -~~~----g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 171 -PDP----GQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred -CCH----HHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 122 2445699999999999999885544433
No 131
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=76.13 E-value=5.6 Score=43.30 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=45.9
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
++|.++++|.|. ||++|. .+.+.++.+.++.. .-.|.|+-+ |. ++
T Consensus 17 ~~~~~~v~f~a~-wC~~c~~~~~~~~~~a~~~~~~-~~~v~~~~v-d~------~~------------------------ 63 (462)
T TIGR01130 17 SHEFVLVEFYAP-WCGHCKSLAPEYEKAADELKKK-GPPIKLAKV-DA------TE------------------------ 63 (462)
T ss_pred cCCCEEEEEECC-CCHHHHhhhHHHHHHHHHHhhc-CCceEEEEE-EC------CC------------------------
Confidence 367799999999 997754 46788888777532 224666665 20 11
Q ss_pred HHHHHHHhhccCCceEEEEECCCC
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQG 430 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqG 430 (658)
-+.+.+.|++.+.|+++++...+
T Consensus 64 -~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 64 -EKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred -cHHHHHhCCCccccEEEEEeCCc
Confidence 01355669999999999996433
No 132
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=75.94 E-value=6.2 Score=34.50 Aligned_cols=45 Identities=4% Similarity=-0.112 Sum_probs=31.4
Q ss_pred hhcCCcEEEEEccCCc-hHHHHHHHHH---HHHHhhcCCceeEEEeecc
Q 046837 481 WMKEERFICLYGGNDE-AWIRKFRNSA---KDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 481 ~i~egK~I~LYgg~d~-~Wir~FT~~~---~~i~~~~~~~~E~v~Vgkd 525 (658)
.+++||.|.|||++++ .||+.|.+.+ .++++..+..+.++.|.-+
T Consensus 7 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 55 (104)
T cd02953 7 ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWT 55 (104)
T ss_pred HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecC
Confidence 3579999999999953 6668887665 4565543336777766644
No 133
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=75.54 E-value=6.9 Score=36.78 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=25.9
Q ss_pred cCcEEEEEEecCCCCChHHHHHHHHHHHHhcCC-CCeeEEEEec
Q 046837 329 KKKHVLLLISRPDDISQEEILFLSNMYKDLKES-KECRIVWLPI 371 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~-~~fEIVwIpi 371 (658)
.+|.|.|-|++. ||+||.. +.++++++.++ .++ +++.=+
T Consensus 13 ~~klVVVdF~a~-WC~pCk~--mdp~l~ela~~~~~~-~~f~kV 52 (114)
T cd02986 13 AEKVLVLRFGRD-EDAVCLQ--LDDILSKTSHDLSKM-ASIYLV 52 (114)
T ss_pred CCCEEEEEEeCC-CChhHHH--HHHHHHHHHHHccCc-eEEEEE
Confidence 589999999999 9999842 34445554322 444 666554
No 134
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=74.60 E-value=4.3 Score=41.06 Aligned_cols=131 Identities=19% Similarity=0.342 Sum_probs=86.2
Q ss_pred cccCCCCcEEecccccCcEEEEEEecCCC---CChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhc
Q 046837 314 LVDGETRTTVQIHVLKKKHVLLLISRPDD---ISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQK 390 (658)
Q Consensus 314 l~~g~~~~kV~Is~L~gK~VlLyfSa~~~---~~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~ 390 (658)
+++|.-+ .++++.++||+|+|+|=.+ + .||.|+......|.+.+ +-+-||+.+|. |+ .|+
T Consensus 18 VVdG~f~-e~~L~dy~gkyvvlfFypl-DftfVcPteIiafSd~~~eF~-~~n~eVig~S~-DS-------------~fs 80 (196)
T KOG0852|consen 18 VVDGEFK-EIKLSDYKGKYVVLFFYPL-DFTFVCPTEIIAFSDRAPEFR-KLNTEVLGIST-DS-------------VFS 80 (196)
T ss_pred EEcCcce-EEeehhhcccEEEEEecCC-ceeeECchhhhhhhhhHHHHH-hcCCeEEEEec-cc-------------hhh
Confidence 7788554 6999999999999999888 6 37899999999999886 46789999997 31 123
Q ss_pred CCCceeecCCCC--------CcHHHHHHHHHhhcc----CCce--EEEEECCCCceec--c----------chHHHHHHh
Q 046837 391 RMPWYSIQDPAM--------IQPAVIKYVKEEWKY----SKKA--IIVSVDPQGRILN--Q----------NAFHTLWIW 444 (658)
Q Consensus 391 ~MPWyAVpf~~~--------i~~~~~r~ike~f~~----~~iP--~LVvL~pqGkv~~--~----------nA~~mI~~w 444 (658)
-.-|-+.|-... +=....+.|.+.|++ .|++ -|.++||+|.+-. - .++.+|
T Consensus 81 hlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLv--- 157 (196)
T KOG0852|consen 81 HLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLV--- 157 (196)
T ss_pred hhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHH---
Confidence 334444442110 001245677777877 3554 5899999886532 2 234443
Q ss_pred CCccccCChhhHHHhhhcCCCchh
Q 046837 445 GISAFPFTAETEEALWKEKPWTLE 468 (658)
Q Consensus 445 G~~AFPFT~~r~eeL~~~e~w~le 468 (658)
+||-||.+..|-.-. .|++.
T Consensus 158 --qAfQ~td~~geVcPa--gW~pg 177 (196)
T KOG0852|consen 158 --QAFQFTDEHGEVCPA--GWKPG 177 (196)
T ss_pred --HHHhhhhccCccccC--CCCCC
Confidence 578887666553332 35553
No 135
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=73.91 E-value=13 Score=29.93 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=11.1
Q ss_pred HHhhccCCceEEEE
Q 046837 412 KEEWKYSKKAIIVS 425 (658)
Q Consensus 412 ke~f~~~~iP~LVv 425 (658)
.++++++++|++++
T Consensus 45 ~~~~~i~~vPti~i 58 (67)
T cd02973 45 ADEYGVMSVPAIVI 58 (67)
T ss_pred HHHcCCcccCEEEE
Confidence 34588999999876
No 136
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=73.18 E-value=26 Score=36.67 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEec--ccC-CC-----cchh-hH-HHHHHhhcCCCceee
Q 046837 330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPI--VDG-SI-----DRQQ-AL-DKFKNLQKRMPWYSI 397 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpi--vD~-s~-----~W~d-de-~~F~~~~~~MPWyAV 397 (658)
+|++...||+. .||-|.- ..+.+.. ..++.+|.|+|+ ..+ |. -|.. |+ +.++.+.....--.+
T Consensus 117 ak~~I~vFtDp-~CpyC~kl~~~l~~~~----~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 117 APRIVYVFADP-NCPYCKQFWQQARPWV----DSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCeEEEEEECC-CChhHHHHHHHHHHHh----hcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 78899999999 9986632 2233211 124577777764 221 11 1333 33 334444433321111
Q ss_pred cCCCCCcHHHHH------HHHHhhccCCceEEEEECCCCce
Q 046837 398 QDPAMIQPAVIK------YVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 398 pf~~~i~~~~~r------~ike~f~~~~iP~LVvL~pqGkv 432 (658)
.-......+..+ .+-+.++++|-|++|+.|.+|++
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 111111122222 34578999999999999999985
No 137
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=71.64 E-value=2.5 Score=32.57 Aligned_cols=31 Identities=16% Similarity=0.498 Sum_probs=21.2
Q ss_pred Cccc-eeccCCCCCCCceeeCCCCCc-ccceeee
Q 046837 621 HCNR-LILAGVNGAIPGTVQCADCGR-DMEMFFM 652 (658)
Q Consensus 621 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~v~ 652 (658)
.|.+ +++--.-+. ++.+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~S 42 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRVIS 42 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEecC
Confidence 4664 444333344 99999999999 8887553
No 138
>PRK10996 thioredoxin 2; Provisional
Probab=70.52 E-value=9.2 Score=36.03 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=34.5
Q ss_pred hhhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 479 LEWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 479 ~~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
.+.+++||.++|||.+++ .-|+.+.+.+.+++++.+..+.++.|..+
T Consensus 46 ~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~ 93 (139)
T PRK10996 46 DKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE 93 (139)
T ss_pred HHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 344678999999999932 33488999999998876666666666554
No 139
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=69.85 E-value=13 Score=31.52 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=34.9
Q ss_pred hcC-CcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 482 MKE-ERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 482 i~e-gK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
+.+ ++.+.+||++++ .-|+.|.+.+.++++..+.++.++.|..+.
T Consensus 13 i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~ 59 (103)
T PF00085_consen 13 INESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE 59 (103)
T ss_dssp HTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred HHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc
Confidence 455 899999999942 334999999999988755588888887763
No 140
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=69.36 E-value=12 Score=37.56 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=18.0
Q ss_pred ccCcEEEEEEecCCCCChHHHHHHHHHHHHh
Q 046837 328 LKKKHVLLLISRPDDISQEEILFLSNMYKDL 358 (658)
Q Consensus 328 L~gK~VlLyfSa~~~~~~~~~~~L~~iY~~l 358 (658)
+++..+.+.|++. ||++|... ..+.+++
T Consensus 131 ~~~pv~I~~F~a~-~C~~C~~~--~~~l~~l 158 (215)
T TIGR02187 131 LDEPVRIEVFVTP-TCPYCPYA--VLMAHKF 158 (215)
T ss_pred cCCCcEEEEEECC-CCCCcHHH--HHHHHHH
Confidence 4555677779999 99887632 2344444
No 141
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=69.16 E-value=9.1 Score=36.19 Aligned_cols=54 Identities=7% Similarity=-0.079 Sum_probs=41.1
Q ss_pred CCcEEEEEccCC-chHHHHHHHHHHHHHhhc-CCceeEEEeeccChhhHHHHhhcc
Q 046837 484 EERFICLYGGND-EAWIRKFRNSAKDVASKA-QINWGMAYVGKKNAKKRLEEISSS 537 (658)
Q Consensus 484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~-~~~~E~v~Vgkdn~~e~v~~~~~~ 537 (658)
+||.+.|||-+. -..|++....+.+++++. +..+.++.|+.|++.+.+++....
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHH
Confidence 799999999874 245588888888887653 456999999999887776666533
No 142
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=69.04 E-value=15 Score=31.79 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=34.1
Q ss_pred cCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 483 KEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 483 ~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
+.+|.+.+||.+. -.+|+.+.+.+.+++++.+..+.++.|.-+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~ 55 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE 55 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC
Confidence 4889999999885 4777999999999987765567667666653
No 143
>PHA02125 thioredoxin-like protein
Probab=68.74 E-value=15 Score=30.80 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=12.3
Q ss_pred HHHHhhccCCceEEE
Q 046837 410 YVKEEWKYSKKAIIV 424 (658)
Q Consensus 410 ~ike~f~~~~iP~LV 424 (658)
.+.+.|++++.|+++
T Consensus 37 ~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 37 ELTAKHHIRSLPTLV 51 (75)
T ss_pred HHHHHcCCceeCeEE
Confidence 456669999999987
No 144
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=68.59 E-value=15 Score=42.08 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=44.5
Q ss_pred cCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
++|.|++.|.+. ||++|. .+.+.++.++++. .+..++.|-++ .++
T Consensus 370 ~~k~VLV~FyAp-WC~~Ck~m~P~~eelA~~~~~-~~v~~~kVdvD-------~~~------------------------ 416 (463)
T TIGR00424 370 RKEAWLVVLYAP-WCPFCQAMEASYLELAEKLAG-SGVKVAKFRAD-------GDQ------------------------ 416 (463)
T ss_pred CCCeEEEEEECC-CChHHHHHHHHHHHHHHHhcc-CCcEEEEEECC-------CCc------------------------
Confidence 578899999999 998865 4567777776642 23444444431 111
Q ss_pred HHHHHHHhhccCCceEEEEECCCC
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQG 430 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqG 430 (658)
.....+.|++++.|+++++...+
T Consensus 417 -~~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 417 -KEFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred -cHHHHHHcCCCccceEEEEECCC
Confidence 11234568999999999996543
No 145
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=67.91 E-value=6.9 Score=33.19 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=33.7
Q ss_pred hcCCcEEEEEccCCc-hHHHHHHHHH---HHHHhhcCCceeEEEeeccChhh
Q 046837 482 MKEERFICLYGGNDE-AWIRKFRNSA---KDVASKAQINWGMAYVGKKNAKK 529 (658)
Q Consensus 482 i~egK~I~LYgg~d~-~Wir~FT~~~---~~i~~~~~~~~E~v~Vgkdn~~e 529 (658)
-++||.|++|||+++ .||+.|...+ .++.+..+.+|-.+.|--++.+.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~ 65 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP 65 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh
Confidence 469999999999974 7778887544 34444345678888877765543
No 146
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=67.51 E-value=14 Score=29.77 Aligned_cols=44 Identities=7% Similarity=-0.052 Sum_probs=32.7
Q ss_pred hcCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 482 MKEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 482 i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
+.+++.+.||++++ -.+|+++.+.+.++++. ...+.++.+.-++
T Consensus 7 ~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~ 51 (93)
T cd02947 7 IKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE 51 (93)
T ss_pred HhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC
Confidence 44667778888775 47789999999999776 5667777776653
No 147
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=66.44 E-value=11 Score=33.93 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=37.5
Q ss_pred CCcEEEEEccCCchHH---HHHHHHHHHHHhhcCCceeEEEeeccChhhHHHHhh
Q 046837 484 EERFICLYGGNDEAWI---RKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEIS 535 (658)
Q Consensus 484 egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~ 535 (658)
.||.+.|||-+ .|| ++..+.+.++++.. .+.++.|+.++..+.+++..
T Consensus 24 ~gk~vvv~F~a--~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 24 KGKPYLLNVWA--SWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCEEEEEEEc--CcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHH
Confidence 69999999987 565 77888888886653 49999999877777777654
No 148
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=66.14 E-value=11 Score=32.94 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=36.6
Q ss_pred cCCcEEEEEccCC-chHHHHHHHHHHH---HHhhcCCceeEEEeeccChhhHHHH
Q 046837 483 KEERFICLYGGND-EAWIRKFRNSAKD---VASKAQINWGMAYVGKKNAKKRLEE 533 (658)
Q Consensus 483 ~egK~I~LYgg~d-~~Wir~FT~~~~~---i~~~~~~~~E~v~Vgkdn~~e~v~~ 533 (658)
.+||++.+||++. -.||+++.+.+.+ +.......+.++++.-+.+++.-..
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEA 57 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccc
Confidence 3799999999885 4778999888875 4444455799999999877654444
No 149
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=65.47 E-value=18 Score=29.97 Aligned_cols=46 Identities=11% Similarity=-0.028 Sum_probs=35.8
Q ss_pred hhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc--CCceeEEEeecc
Q 046837 480 EWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA--QINWGMAYVGKK 525 (658)
Q Consensus 480 ~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~--~~~~E~v~Vgkd 525 (658)
+.+.+++.+.++|.++ -.+|+.|.+.+.++++.. +..+.++.|..+
T Consensus 10 ~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 10 ELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred HHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 3466787888888886 478899999999988765 577888877665
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=64.63 E-value=19 Score=30.43 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=14.3
Q ss_pred hccCCceEEEEECCCCcee
Q 046837 415 WKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 415 f~~~~iP~LVvL~pqGkv~ 433 (658)
+++.++|++++ +|+++
T Consensus 45 ~~v~~vPti~i---~G~~~ 60 (76)
T TIGR00412 45 AGVTATPGVAV---DGELV 60 (76)
T ss_pred cCCCcCCEEEE---CCEEE
Confidence 79999999999 88776
No 151
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=63.46 E-value=16 Score=31.79 Aligned_cols=46 Identities=4% Similarity=-0.067 Sum_probs=35.8
Q ss_pred hhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 481 WMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 481 ~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
-+++++.+.++|.+.+ ..|+++.+.+.++++..+..+.++.|.-++
T Consensus 14 ~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~ 60 (101)
T cd03003 14 AVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD 60 (101)
T ss_pred HhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc
Confidence 3568899999998842 456999999999988766667777777774
No 152
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=63.31 E-value=14 Score=32.45 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=38.0
Q ss_pred hhhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHHHhhcc
Q 046837 476 ATILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISSS 537 (658)
Q Consensus 476 ~~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~~~ 537 (658)
..+.+. ++||.+.|||-+. -..|++..+.+.+++++....+.++.++ ++..+..++..+.
T Consensus 13 ~~l~~~-~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~ 73 (114)
T cd02967 13 VRIGGI-SPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKK 73 (114)
T ss_pred EEcccc-cCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHH
Confidence 344443 2599999999772 2334777888888876544468888776 4444555554433
No 153
>PLN02309 5'-adenylylsulfate reductase
Probab=62.17 E-value=26 Score=40.07 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=43.3
Q ss_pred cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
++|.|+++|.+. ||++|.. +.+.++.++++. . .|.|.-+ | .+.++
T Consensus 364 ~~k~vlV~FyAp-WC~~Cq~m~p~~e~LA~~~~~-~--~V~f~kV-D----~d~~~------------------------ 410 (457)
T PLN02309 364 RKEPWLVVLYAP-WCPFCQAMEASYEELAEKLAG-S--GVKVAKF-R----ADGDQ------------------------ 410 (457)
T ss_pred CCCeEEEEEECC-CChHHHHHHHHHHHHHHHhcc-C--CeEEEEE-E----CCCcc------------------------
Confidence 588999999999 9988763 456666655542 2 3555554 1 01011
Q ss_pred HHHHHHHhhccCCceEEEEECCCC
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQG 430 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqG 430 (658)
....++.|++++.|+++++.+.+
T Consensus 411 -~~la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 411 -KEFAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred -hHHHHhhCCCceeeEEEEEeCCC
Confidence 11223458999999999996543
No 154
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=62.01 E-value=17 Score=30.50 Aligned_cols=55 Identities=5% Similarity=-0.087 Sum_probs=39.4
Q ss_pred CCcEEEEEccCC-chHHHHHHHHHHHHHhhcC-CceeEEEeeccCh-hhHHHHhhccc
Q 046837 484 EERFICLYGGND-EAWIRKFRNSAKDVASKAQ-INWGMAYVGKKNA-KKRLEEISSSI 538 (658)
Q Consensus 484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~-~~~E~v~Vgkdn~-~e~v~~~~~~i 538 (658)
.||++.++|.+. -..|+.+.+.+.++.+..+ ..+.++.|+.|.. .|.+++..+..
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 489999999883 2445888888888866533 5788899988865 56666555443
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=60.71 E-value=18 Score=34.22 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=40.9
Q ss_pred CcEEEEEEecC------CCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCC
Q 046837 330 KKHVLLLISRP------DDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPA 401 (658)
Q Consensus 330 gK~VlLyfSa~------~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~ 401 (658)
|+.+.|||.+. .|||.|.. +.+.+.+++.. ++.-+|.+.+=++ ..|.+....|..
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~--~~~~lv~v~VG~r-~~Wkdp~n~fR~-------------- 81 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP--ENARLVYVEVGDR-PEWKDPNNPFRT-------------- 81 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S--TTEEEEEEE---H-HHHC-TTSHHHH--------------
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC--CCceEEEEEcCCH-HHhCCCCCCceE--------------
Confidence 45555555432 27887654 56888888743 4666777665221 234332222321
Q ss_pred CCcHHHHHHHHHhhccCCceEEEEECCCCceecc
Q 046837 402 MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 402 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
...|+++++|+|+-.+..+|.+..
T Consensus 82 ----------~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 82 ----------DPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp ------------CC---SSSEEEECTSS-EEEHH
T ss_pred ----------cceeeeeecceEEEECCCCccchh
Confidence 123999999999999877776543
No 156
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=60.60 E-value=19 Score=30.76 Aligned_cols=42 Identities=10% Similarity=-0.083 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
.|+.+.+||.+++ ..|+.+.+.+.++++..+..+-++.|.-+
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~ 53 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD 53 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc
Confidence 5889999999932 34699999999998765555666666555
No 157
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=58.92 E-value=16 Score=33.13 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=34.8
Q ss_pred hhhhhcCC-cEEEEEccCCc-hHHHHHHHHHH---HHHhhcCCceeEEEeeccCh
Q 046837 478 ILEWMKEE-RFICLYGGNDE-AWIRKFRNSAK---DVASKAQINWGMAYVGKKNA 527 (658)
Q Consensus 478 I~~~i~eg-K~I~LYgg~d~-~Wir~FT~~~~---~i~~~~~~~~E~v~Vgkdn~ 527 (658)
+.+..++| |.|.++|++++ .||+++.+.+. ++++..+..+.++.|.-+..
T Consensus 6 ~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 60 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGD 60 (125)
T ss_pred HHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCC
Confidence 33446799 99999999964 77788887653 45443344688888876643
No 158
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=58.47 E-value=21 Score=31.42 Aligned_cols=45 Identities=4% Similarity=-0.103 Sum_probs=33.1
Q ss_pred hhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcC-CceeEEEeecc
Q 046837 481 WMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQ-INWGMAYVGKK 525 (658)
Q Consensus 481 ~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~-~~~E~v~Vgkd 525 (658)
.++.|+.+.+||.+.+ .-|+.+.+.+.+++++.+ ..+.++.|.-|
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 3568999999999932 334999999999977644 34666666666
No 159
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=58.36 E-value=5 Score=29.99 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=9.9
Q ss_pred ceeeCCCCCcccce
Q 046837 636 GTVQCADCGRDMEM 649 (658)
Q Consensus 636 ~~i~CpeC~R~ME~ 649 (658)
..+.||+|+|++--
T Consensus 3 ~~~~C~nC~R~v~a 16 (33)
T PF08209_consen 3 PYVECPNCGRPVAA 16 (33)
T ss_dssp -EEE-TTTSSEEEG
T ss_pred CeEECCCCcCCcch
Confidence 46899999998753
No 160
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=58.14 E-value=27 Score=29.82 Aligned_cols=43 Identities=7% Similarity=-0.144 Sum_probs=31.7
Q ss_pred CCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 484 EERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
.++.+.+||+++ -..|++|.+.+.+++++....+.++.+..++
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~ 60 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc
Confidence 566688888885 3556999999999987755567777776553
No 161
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=57.14 E-value=7.9 Score=30.55 Aligned_cols=31 Identities=13% Similarity=0.426 Sum_probs=19.8
Q ss_pred Cccc-eeccCCCCCCCceeeCCCCCc-ccceeee
Q 046837 621 HCNR-LILAGVNGAIPGTVQCADCGR-DMEMFFM 652 (658)
Q Consensus 621 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~v~ 652 (658)
.|.+ +++-...+. .+.+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~s 42 (52)
T TIGR02605 10 ACGHRFEVLQKMSD-DPLATCPECGGEKLRRLLS 42 (52)
T ss_pred CCCCEeEEEEecCC-CCCCCCCCCCCCceeEEec
Confidence 3666 544322233 67889999998 6776544
No 162
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=56.85 E-value=17 Score=35.14 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=35.9
Q ss_pred cCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHHHh
Q 046837 483 KEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEI 534 (658)
Q Consensus 483 ~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~~~ 534 (658)
..||.+.|||-++ -..|+++.+.+.++++. .++++.|+.+...+..++.
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~ 110 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKF 110 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHH
Confidence 4799999999884 24458888888888654 5899999876555555443
No 163
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=56.67 E-value=18 Score=30.44 Aligned_cols=43 Identities=2% Similarity=-0.118 Sum_probs=32.8
Q ss_pred CCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 484 EERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
.++.+.|||.++ -..|++|.+.+.++++..+..+.++.|..++
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 56 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE 56 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC
Confidence 567999999883 2445999999999987666668888887664
No 164
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=52.06 E-value=7.4 Score=31.51 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=11.3
Q ss_pred CceeeCCCCCccc
Q 046837 635 PGTVQCADCGRDM 647 (658)
Q Consensus 635 p~~i~CpeC~R~M 647 (658)
.+.+.||+|||.+
T Consensus 44 ~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 44 DEIVFCPNCGRIL 56 (56)
T ss_pred CCeEECcCCCccC
Confidence 6789999999975
No 165
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=51.72 E-value=24 Score=34.94 Aligned_cols=50 Identities=10% Similarity=-0.034 Sum_probs=33.7
Q ss_pred cCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHHHhh
Q 046837 483 KEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEIS 535 (658)
Q Consensus 483 ~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~ 535 (658)
..||.+.|||.+. -..|++..+.+.+++++. .+.++.|+.+++ +..++.+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~--~~~vv~Is~~~~-~~~~~~~ 122 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE--ETDVVMISDGTP-AEHRRFL 122 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHHH
Confidence 3899999999873 244488888888886553 467888986644 3444333
No 166
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=51.31 E-value=53 Score=33.07 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=51.5
Q ss_pred CcEEEEEEecCCCCChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHH
Q 046837 330 KKHVLLLISRPDDISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIK 409 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r 409 (658)
++.|.+.|++. ||++|..- .+++++|..+- .++.|+-+. -++ .
T Consensus 102 ~~~VVV~Fya~-wc~~C~~m--~~~l~~LA~k~-~~vkFvkI~-------ad~-----------------------~--- 144 (192)
T cd02988 102 DTWVVVHLYKD-GIPLCRLL--NQHLSELARKF-PDTKFVKII-------STQ-----------------------C--- 144 (192)
T ss_pred CCEEEEEEECC-CCchHHHH--HHHHHHHHHHC-CCCEEEEEE-------hHH-----------------------h---
Confidence 46899999999 99998743 33444442211 146777761 011 0
Q ss_pred HHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHh
Q 046837 410 YVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEAL 459 (658)
Q Consensus 410 ~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL 459 (658)
.+.|+++++|++++.- +|+++..= ++ ....|.. =||.+.+|.+
T Consensus 145 --~~~~~i~~lPTlliyk-~G~~v~~i-vG-~~~~gg~--~~~~~~lE~~ 187 (192)
T cd02988 145 --IPNYPDKNLPTILVYR-NGDIVKQF-IG-LLEFGGM--NTTMEDLEWL 187 (192)
T ss_pred --HhhCCCCCCCEEEEEE-CCEEEEEE-eC-chhhCCC--CCCHHHHHHH
Confidence 1458999999999985 66655321 12 1224555 6677776654
No 167
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.20 E-value=45 Score=36.37 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=59.2
Q ss_pred ccccCcEEEEEEecCCCCChH--HHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 046837 326 HVLKKKHVLLLISRPDDISQE--EILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMI 403 (658)
Q Consensus 326 s~L~gK~VlLyfSa~~~~~~~--~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i 403 (658)
..-+.+.|+++|=+. ||++| .++.|.++=.+-+ +.|+.+=|=+++ +
T Consensus 39 ~~S~~~PVlV~fWap-~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~--------~--------------------- 86 (304)
T COG3118 39 QSSREVPVLVDFWAP-WCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDA--------E--------------------- 86 (304)
T ss_pred HHccCCCeEEEecCC-CCchHHHHHHHHHHHHHHhC--CceEEEEecCCc--------c---------------------
Confidence 344566899999999 99775 4677888777765 889998887621 1
Q ss_pred cHHHHHHHHHhhccCCceEEEEEC---C----CCceeccchHHHHHHhCCc
Q 046837 404 QPAVIKYVKEEWKYSKKAIIVSVD---P----QGRILNQNAFHTLWIWGIS 447 (658)
Q Consensus 404 ~~~~~r~ike~f~~~~iP~LVvL~---p----qGkv~~~nA~~mI~~wG~~ 447 (658)
+ -|.-.|+++.||+++.+- | +|-.=.+--++++...+..
T Consensus 87 -p----~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 87 -P----MVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred -h----hHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 1 233459999999999883 2 4444344566777777766
No 168
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=50.94 E-value=12 Score=31.72 Aligned_cols=20 Identities=20% Similarity=0.028 Sum_probs=17.0
Q ss_pred cCcEEEEEEecCCCCChHHHH
Q 046837 329 KKKHVLLLISRPDDISQEEIL 349 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~~ 349 (658)
+||.|+++|++. ||+.|...
T Consensus 16 ~~kpvlv~f~a~-wC~~C~~l 35 (82)
T PF13899_consen 16 EGKPVLVDFGAD-WCPPCKKL 35 (82)
T ss_dssp HTSEEEEEEETT-TTHHHHHH
T ss_pred cCCCEEEEEECC-CCHhHHHH
Confidence 589999999999 99876544
No 169
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=50.52 E-value=26 Score=34.89 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=43.4
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCC-hHHHHHHHHHHHHhcCCCCeeEEEEec
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDIS-QEEILFLSNMYKDLKESKECRIVWLPI 371 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~-~~~~~~L~~iY~~lk~~~~fEIVwIpi 371 (658)
..+|..++++.++||.|++.=.|. -|. .....-|..+|++.+ +..|||+=.|.
T Consensus 12 ~~~G~~~~l~~~~GkVlLIVNtAS-kCGfTpQYegLe~Ly~ky~-~~Gf~VLgFPc 65 (162)
T COG0386 12 DIDGEPVSLSDYKGKVLLIVNTAS-KCGFTPQYEGLEALYKKYK-DKGFEVLGFPC 65 (162)
T ss_pred ccCCCCccHHHhCCcEEEEEEccc-ccCCcHhHHHHHHHHHHHh-hCCcEEEeccc
Confidence 346788999999999999999998 774 224446899999987 57899999998
No 170
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=50.48 E-value=23 Score=37.59 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=55.5
Q ss_pred ecccccCcEEEEEEecCCCCCh--HHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCC
Q 046837 324 QIHVLKKKHVLLLISRPDDISQ--EEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPA 401 (658)
Q Consensus 324 ~Is~L~gK~VlLyfSa~~~~~~--~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~ 401 (658)
-|..|.+++=++||-.. +|+- .+.++|..+=++- .++|+-||++. .--..|.+. . +
T Consensus 144 ~i~~la~~~gL~fFy~~-~C~~C~~~apil~~fa~~y----gi~v~~VS~DG------~~~p~fp~~---~-------~- 201 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRG-KSPISQKMAPVIQAFAKEY----GISVIPISVDG------TLIPGLPNS---R-------S- 201 (256)
T ss_pred HHHHHHhceeEEEEECC-CCchhHHHHHHHHHHHHHh----CCeEEEEecCC------CCCCCCCCc---c-------C-
Confidence 34456677777777777 8864 5566777665554 49999999831 111112211 0 1
Q ss_pred CCcHHHHHHHHHhhccCCceEEEEECCCCceeccchHH
Q 046837 402 MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFH 439 (658)
Q Consensus 402 ~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~ 439 (658)
|. -+.+.|+++..|.|++++|+++...+=|.+
T Consensus 202 --d~----gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 202 --DS----GQAQHLGVKYFPALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred --Ch----HHHHhcCCccCceEEEEECCCCcEEEEeec
Confidence 12 234568999999999999996655444444
No 171
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=50.21 E-value=28 Score=29.43 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=30.5
Q ss_pred hhhcCCcEEEEEccCCchHH---HHHHHHHHHHHhhcCC--ceeEEEeecc
Q 046837 480 EWMKEERFICLYGGNDEAWI---RKFRNSAKDVASKAQI--NWGMAYVGKK 525 (658)
Q Consensus 480 ~~i~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~~--~~E~v~Vgkd 525 (658)
+-++.|+.++|+|.+ .|| |+|.+.+.++++..+. .+-++.+.-+
T Consensus 8 ~~~~~~~~~~i~f~~--~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 8 DIVLSNKDVLVEFYA--PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred HHhccCCcEEEEEEC--CCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 335689999999998 566 8888888888765322 3555544444
No 172
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=49.97 E-value=26 Score=34.45 Aligned_cols=51 Identities=6% Similarity=-0.040 Sum_probs=37.5
Q ss_pred cCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccChhhHHHHhhc
Q 046837 483 KEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKNAKKRLEEISS 536 (658)
Q Consensus 483 ~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v~~~~~ 536 (658)
..||.+.|+|-+.+ ..|++..+.+.++++. .++++.|+-++..+.+++.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHH
Confidence 37999999998842 5558888888888643 588999997655566665543
No 173
>PHA02278 thioredoxin-like protein
Probab=49.26 E-value=20 Score=32.45 Aligned_cols=44 Identities=5% Similarity=0.050 Sum_probs=32.0
Q ss_pred hcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 482 MKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 482 i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
+++++.+.+||.+++ ..||.+.+.+.+++++.+....++.|--|
T Consensus 11 i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd 55 (103)
T PHA02278 11 IRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLD 55 (103)
T ss_pred HhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECC
Confidence 468999999999942 44499999999997653334455666555
No 174
>PTZ00051 thioredoxin; Provisional
Probab=48.83 E-value=35 Score=29.10 Aligned_cols=31 Identities=0% Similarity=-0.014 Sum_probs=24.8
Q ss_pred hcCCcEEEEEccCCc-hHHHHHHHHHHHHHhh
Q 046837 482 MKEERFICLYGGNDE-AWIRKFRNSAKDVASK 512 (658)
Q Consensus 482 i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~ 512 (658)
+++++.+.|||++++ ..||+|.+.+.++++.
T Consensus 15 ~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~ 46 (98)
T PTZ00051 15 LSQNELVIVDFYAEWCGPCKRIAPFYEECSKE 46 (98)
T ss_pred HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHH
Confidence 568899999999942 4458999999998775
No 175
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.53 E-value=23 Score=34.90 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=32.2
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCC---------------CCeeEEEEecc
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKES---------------KECRIVWLPIV 372 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~---------------~~fEIVwIpiv 372 (658)
+..|++=|.|. ||.||. .|+|.++=.+.+.. ++|+|=-||.+
T Consensus 61 ~~PVlVdF~A~-WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 61 DVPVLVDFHAE-WCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred CCCEEEEEecC-cCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 34699999999 998876 46788877775311 78999888865
No 176
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=48.17 E-value=32 Score=30.12 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=33.7
Q ss_pred CCChhhhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc---CCceeEEEeecc
Q 046837 473 DIDATILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA---QINWGMAYVGKK 525 (658)
Q Consensus 473 ~id~~I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~---~~~~E~v~Vgkd 525 (658)
+.+....+ +.+++.+.|+|.+. -.-||++.+.+.++++.. +..+.+..+.-+
T Consensus 4 ~~~~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 4 DLDDSFKD-VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred echhhhhh-hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 34444444 45678999999993 133488888888887753 344666656544
No 177
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.90 E-value=32 Score=34.53 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=53.3
Q ss_pred ccCcEEEEEEecCCCCChHHHHH-HHHHHHHhcC--CCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCc
Q 046837 328 LKKKHVLLLISRPDDISQEEILF-LSNMYKDLKE--SKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQ 404 (658)
Q Consensus 328 L~gK~VlLyfSa~~~~~~~~~~~-L~~iY~~lk~--~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~ 404 (658)
-+||+.+|.|+.. .|+-|+... -..-=.++++ .+.|-++.+-+-+. ..-.|..- ++-.
T Consensus 40 ~~~Kylllmfes~-~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~s------kpv~f~~g------------~kee 100 (182)
T COG2143 40 PNDKYLLLMFESN-GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYS------KPVLFKVG------------DKEE 100 (182)
T ss_pred ccCcEEEEEEcCC-CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccC------cceEeecC------------ceee
Confidence 3589999999999 998776542 1111112222 26677777776221 22122210 0001
Q ss_pred HHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837 405 PAVIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 405 ~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
..-.+-|...|.+++-|++|..|..|+.+
T Consensus 101 ~~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 101 KMSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred eecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 12345677789999999999999999985
No 178
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=47.49 E-value=1.9e+02 Score=28.55 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=50.0
Q ss_pred CcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEE--ecccC--CC-----cchh-h-HHHHHHhhcCCC-ce
Q 046837 330 KKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWL--PIVDG--SI-----DRQQ-A-LDKFKNLQKRMP-WY 395 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwI--pivD~--s~-----~W~d-d-e~~F~~~~~~MP-Wy 395 (658)
+|+...+|++. +||.|.- ..|.+ ...++.|.++ |+..+ |. -|.. + .+.+.++....+ .-
T Consensus 77 ~~~~i~~f~D~-~Cp~C~~~~~~l~~------~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 77 GKRVVYVFTDP-DCPYCRKLEKELKP------NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCEEEEEEECC-CCccHHHHHHHHhh------ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 78899999999 9987632 23433 2345555555 44321 11 1322 2 233444443321 10
Q ss_pred eecCCCCCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837 396 SIQDPAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 396 AVpf~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
....-. .+......+-+.+++++.|++|+ ++|+++
T Consensus 150 ~~~~~~-~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 150 PAASCD-NPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred CccccC-chHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 111111 12334456678899999999984 447764
No 179
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=47.36 E-value=23 Score=32.24 Aligned_cols=44 Identities=5% Similarity=-0.016 Sum_probs=31.1
Q ss_pred CCcEEEEEccCC-chH-HHHHHHHHHHHHhhcC----CceeEEEeeccCh
Q 046837 484 EERFICLYGGND-EAW-IRKFRNSAKDVASKAQ----INWGMAYVGKKNA 527 (658)
Q Consensus 484 egK~I~LYgg~d-~~W-ir~FT~~~~~i~~~~~----~~~E~v~Vgkdn~ 527 (658)
.||++.|+|... -.. |+.-...+++++++.+ ..++++.|+.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 799999998773 233 5666677777766533 3599999998753
No 180
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=47.24 E-value=40 Score=31.56 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=34.5
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccChh
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKNAK 528 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~ 528 (658)
.++.+.++|++++ ..|+.+.+.+.+++++....+..+.|--|+-.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~ 58 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP 58 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH
Confidence 5789999999932 33499999999998875555778888887543
No 181
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=46.08 E-value=9.3 Score=30.15 Aligned_cols=14 Identities=36% Similarity=0.997 Sum_probs=11.9
Q ss_pred ceeeCCCCCcccce
Q 046837 636 GTVQCADCGRDMEM 649 (658)
Q Consensus 636 ~~i~CpeC~R~ME~ 649 (658)
..+.|++||++|=.
T Consensus 4 g~l~C~~CG~~m~~ 17 (58)
T PF13408_consen 4 GLLRCGHCGSKMTR 17 (58)
T ss_pred CcEEcccCCcEeEE
Confidence 57899999999954
No 182
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=45.92 E-value=43 Score=29.02 Aligned_cols=42 Identities=5% Similarity=-0.209 Sum_probs=31.5
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
.++.+.++|.+++ .-|+.+.+.+.++++..+..+.+..|.-+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~ 60 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ 60 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 6789999999942 44599999999998875555666666655
No 183
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=45.64 E-value=33 Score=29.80 Aligned_cols=43 Identities=7% Similarity=-0.155 Sum_probs=32.6
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
.|+.+.++|.+++ ..|+++.+.+.++++..+..+.++.|.-++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 6888999999942 445899999999987766567777776663
No 184
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.60 E-value=12 Score=31.23 Aligned_cols=29 Identities=28% Similarity=0.731 Sum_probs=19.3
Q ss_pred CCCCCc--cceeccCCCCCCCceeeCCCCCccc
Q 046837 617 HPGKHC--NRLILAGVNGAIPGTVQCADCGRDM 647 (658)
Q Consensus 617 ~~~~~C--~~~~~p~~~g~ip~~i~CpeC~R~M 647 (658)
+-||+| ||..+--.-.+| +|+|.+|||+.
T Consensus 14 KK~H~Cg~NrwkIiRvGaDI--kikC~nC~h~v 44 (60)
T COG4481 14 KKPHACGTNRWKIIRVGADI--KIKCENCGHSV 44 (60)
T ss_pred cCCCccccceEEEEEecCcE--EEEecCCCcEE
Confidence 348888 455554433444 79999999963
No 185
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=45.31 E-value=63 Score=27.39 Aligned_cols=40 Identities=8% Similarity=-0.017 Sum_probs=29.1
Q ss_pred CcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeec
Q 046837 485 ERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGK 524 (658)
Q Consensus 485 gK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgk 524 (658)
+|.+.++|.++ -.+|+++.+.+.++++.....+-++.|.-
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~ 54 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA 54 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc
Confidence 69999999885 36669999999999776444555555543
No 186
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=44.50 E-value=59 Score=26.77 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=36.2
Q ss_pred EEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHHHHHHH
Q 046837 335 LLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVK 412 (658)
Q Consensus 335 LyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~~r~ik 412 (658)
..|++. |||.|.- +.|.+.+ ....|+++.|... ++. ....+++.
T Consensus 2 ~~f~~~-~Cp~C~~~~~~L~~~~----i~~~~~~~~v~~~-------~~~----------------------~~~~~~l~ 47 (84)
T TIGR02180 2 VVFSKS-YCPYCKKAKEILAKLN----VKPAYEVVELDQL-------SNG----------------------SEIQDYLE 47 (84)
T ss_pred EEEECC-CChhHHHHHHHHHHcC----CCCCCEEEEeeCC-------CCh----------------------HHHHHHHH
Confidence 467888 9988653 3465544 2345888888752 111 12345666
Q ss_pred HhhccCCceEEEE
Q 046837 413 EEWKYSKKAIIVS 425 (658)
Q Consensus 413 e~f~~~~iP~LVv 425 (658)
+.+++..+|.+.+
T Consensus 48 ~~~g~~~vP~v~i 60 (84)
T TIGR02180 48 EITGQRTVPNIFI 60 (84)
T ss_pred HHhCCCCCCeEEE
Confidence 6788888999854
No 187
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=44.14 E-value=45 Score=30.22 Aligned_cols=44 Identities=9% Similarity=-0.099 Sum_probs=33.3
Q ss_pred hhhhhhcCCcEEEEEccCCchHH---HHHHHHHHHHHhhc-CCceeEEEeec
Q 046837 477 TILEWMKEERFICLYGGNDEAWI---RKFRNSAKDVASKA-QINWGMAYVGK 524 (658)
Q Consensus 477 ~I~~~i~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~-~~~~E~v~Vgk 524 (658)
.+++. .||.+.|||-+ .|| ++-.+.+.+++++. +..++++.|+.
T Consensus 17 ~l~~~--~gk~vvl~F~a--~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 17 SLAQL--RGKVVLLDFWT--YCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CHHHh--CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 44454 78999999977 565 77788888887764 46799999975
No 188
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=44.07 E-value=1.7e+02 Score=27.24 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=50.2
Q ss_pred ecccccCcE-EEEEEecCCCCChHH---HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecC
Q 046837 324 QIHVLKKKH-VLLLISRPDDISQEE---ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQD 399 (658)
Q Consensus 324 ~Is~L~gK~-VlLyfSa~~~~~~~~---~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf 399 (658)
+++.+++|+ ++++|+.. .--+.. ...|.+-...| .+=.|+++.+++. .....+
T Consensus 2 ~L~~~~w~~R~lvv~aps-~~d~~~~~q~~~L~~~~~~l---~eRdi~v~~i~~~-----~~~~~~-------------- 58 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPS-ADDPRYQQQLEELQNNRCGL---DERDIVVIVITGD-----GARSPG-------------- 58 (118)
T ss_pred ChhHhcCcCceEEEECCC-CCCHHHHHHHHHHHhhhhcc---ccCceEEEEEeCC-----cccccc--------------
Confidence 467788888 55555544 222222 22233333333 4456888888642 111111
Q ss_pred CCCCcHHHHHHHHHhhccC-CceEEEEECCCCceec
Q 046837 400 PAMIQPAVIKYVKEEWKYS-KKAIIVSVDPQGRILN 434 (658)
Q Consensus 400 ~~~i~~~~~r~ike~f~~~-~iP~LVvL~pqGkv~~ 434 (658)
...+....+.|++.|++. +--.+|++|.||.+=.
T Consensus 59 -~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~ 93 (118)
T PF13778_consen 59 -KPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKL 93 (118)
T ss_pred -CcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEE
Confidence 223556788889999974 3378999999997743
No 189
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=43.97 E-value=51 Score=29.94 Aligned_cols=44 Identities=5% Similarity=0.111 Sum_probs=32.1
Q ss_pred hcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 482 MKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 482 i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
+..++.+.+||++++ ..|+.+-+.+.++++.. ..++++.|..|.
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~ 63 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE 63 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc
Confidence 467888999999843 45588888998887664 446666666663
No 190
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=43.86 E-value=1.1e+02 Score=29.82 Aligned_cols=67 Identities=9% Similarity=0.051 Sum_probs=41.3
Q ss_pred cCcEEEEEEecCCCCChHHH--HHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH
Q 046837 329 KKKHVLLLISRPDDISQEEI--LFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA 406 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~~~~--~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~ 406 (658)
.+|.|.+-|+|. ||+||.. +.|.++=++++ +...|+=|=+ |+
T Consensus 22 ~~~lVVvdF~A~-WCgpCk~m~p~l~~la~~~~--~~~~~~kVDV--------De------------------------- 65 (142)
T PLN00410 22 EERLVVIRFGHD-WDETCMQMDEVLASVAETIK--NFAVIYLVDI--------TE------------------------- 65 (142)
T ss_pred CCCEEEEEEECC-CChhHHHHHHHHHHHHHHcC--CceEEEEEEC--------CC-------------------------
Confidence 367899999999 9999853 35555544442 2233333333 11
Q ss_pred HHHHHHHhhccCCceEEEEECCCCce
Q 046837 407 VIKYVKEEWKYSKKAIIVSVDPQGRI 432 (658)
Q Consensus 407 ~~r~ike~f~~~~iP~LVvL~pqGkv 432 (658)
..-+.+.|++++.|+++.+=.+|+.
T Consensus 66 -~~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 66 -VPDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred -CHHHHHHcCccCCCcEEEEEECCeE
Confidence 1123445899988888866667763
No 191
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=92 Score=34.18 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=77.4
Q ss_pred CcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 330 KKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
++.+.+.|-+. ||.+|. .+...++=+.++ + +|-+.-|| ...
T Consensus 47 ~~~~~v~fyap-wc~~c~~l~~~~~~~~~~l~--~---~~~~~~vd-------------------------------~~~ 89 (383)
T KOG0191|consen 47 DSPWLVEFYAP-WCGHCKKLAPTYKKLAKALK--G---KVKIGAVD-------------------------------CDE 89 (383)
T ss_pred CCceEEEEECC-CCcchhhhchHHHHHHHHhc--C---ceEEEEeC-------------------------------chh
Confidence 45688899999 998764 233333333333 2 55555543 244
Q ss_pred HHHHHHhhccCCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhcCCCc-h-hhcccCCChhhhhhhcCC
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWT-L-ELLVGDIDATILEWMKEE 485 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w~-l-e~Lv~~id~~I~~~i~eg 485 (658)
.+.+.+.+++.|-|++++..|..+.+...+. .-....++|-....+..-..-.-. . +++.++.+..+.+ .++.
T Consensus 90 ~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~ 164 (383)
T KOG0191|consen 90 HKDLCEKYGIQGFPTLKVFRPGKKPIDYSGP----RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKD-SDAD 164 (383)
T ss_pred hHHHHHhcCCccCcEEEEEcCCCceeeccCc----ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhc-cCcc
Confidence 5667778999999999999988545433330 000111222111111111111111 1 1121223333322 2344
Q ss_pred cEEEEEccCCchHH---HHHHHHHHHHHhhc--CCceeEEEeecc
Q 046837 486 RFICLYGGNDEAWI---RKFRNSAKDVASKA--QINWGMAYVGKK 525 (658)
Q Consensus 486 K~I~LYgg~d~~Wi---r~FT~~~~~i~~~~--~~~~E~v~Vgkd 525 (658)
+.|-+| + .|| +.+.+.+.++++.. +..+++.-+..+
T Consensus 165 ~lv~f~--a--Pwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 165 WLVEFY--A--PWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred eEEEEe--c--cccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 566664 3 666 77777777776643 466666666644
No 192
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=42.30 E-value=41 Score=28.64 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=29.8
Q ss_pred hcCCcEEEEEccCCchHH---HHHHHHHHHHHhhcC---CceeEEEeecc
Q 046837 482 MKEERFICLYGGNDEAWI---RKFRNSAKDVASKAQ---INWGMAYVGKK 525 (658)
Q Consensus 482 i~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~---~~~E~v~Vgkd 525 (658)
+..|+ +.++|.+ .|| +++.+.+.++++..+ ..+.++.|.-+
T Consensus 14 ~~~~~-~lv~f~a--~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~ 60 (102)
T cd03005 14 IAEGN-HFVKFFA--PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60 (102)
T ss_pred hhcCC-EEEEEEC--CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC
Confidence 45665 8888888 564 899999999977643 36777777655
No 193
>PRK09381 trxA thioredoxin; Provisional
Probab=42.07 E-value=48 Score=29.04 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=33.3
Q ss_pred cCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 483 KEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 483 ~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
..++.+.++|-+. -.-|+.+.+.+.++++..+..+.++.|.-+.
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~ 63 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC
Confidence 3678899999883 1335999999999988765567778777663
No 194
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=41.62 E-value=37 Score=34.15 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=43.2
Q ss_pred CCCCcEEecccccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEec
Q 046837 317 GETRTTVQIHVLKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPI 371 (658)
Q Consensus 317 g~~~~kV~Is~L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpi 371 (658)
..+|..|+++.++||.|++.=-|. -|. +..-..|.+.|++.+ ...|+|+-.|.
T Consensus 21 d~~G~~v~l~~yrGkV~LiVNVAS-~Cg~T~~~Y~~l~~L~~ky~-~~Gl~ILaFPC 75 (171)
T KOG1651|consen 21 DLDGEYVSLSQYRGKVVLIVNVAS-QCGLTESQYTELNELYEKYK-DQGLEILAFPC 75 (171)
T ss_pred cCCCCCccHHHhCCeEEEEEEccc-ccccchhcchhHHHHHHHHh-hCCeEEEEecc
Confidence 446788999999999999988888 885 334457888888886 46799999998
No 195
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=41.43 E-value=38 Score=29.90 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCchHH---HHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 484 EERFICLYGGNDEAWI---RKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 484 egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
.||.+.++|.+ .|| +.+.+.+.+++++. ..+.++.|..|
T Consensus 14 ~~k~vvv~F~a--~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d 55 (103)
T cd02985 14 KGRLVVLEFAL--KHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGD 55 (103)
T ss_pred CCCEEEEEEEC--CCCHhHHHHhHHHHHHHHHC-CCCEEEEEECC
Confidence 49999999999 565 99999999998775 45666667655
No 196
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=41.04 E-value=12 Score=25.87 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=10.5
Q ss_pred ceeeCCCCCcccc
Q 046837 636 GTVQCADCGRDME 648 (658)
Q Consensus 636 ~~i~CpeC~R~ME 648 (658)
+.+.||.|||.+.
T Consensus 1 ~l~~C~~CgR~F~ 13 (25)
T PF13913_consen 1 ELVPCPICGRKFN 13 (25)
T ss_pred CCCcCCCCCCEEC
Confidence 3678999999864
No 197
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=40.87 E-value=35 Score=31.31 Aligned_cols=30 Identities=3% Similarity=-0.056 Sum_probs=24.1
Q ss_pred hcCCcEEEEEccCCc-hHHHHHHHHHHHHHh
Q 046837 482 MKEERFICLYGGNDE-AWIRKFRNSAKDVAS 511 (658)
Q Consensus 482 i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~ 511 (658)
..+||-|+++|++++ .||+.+.+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~ 46 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKE 46 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHH
Confidence 458999999999974 778988887777644
No 198
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=40.65 E-value=43 Score=33.39 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=35.7
Q ss_pred cCcEEEEEEecCCCCCh-----HHHH---HHHHHHHHhcCCCCeeEEEEecc-cCCCcchhhHHHHHHhhcCCCceeecC
Q 046837 329 KKKHVLLLISRPDDISQ-----EEIL---FLSNMYKDLKESKECRIVWLPIV-DGSIDRQQALDKFKNLQKRMPWYSIQD 399 (658)
Q Consensus 329 ~gK~VlLyfSa~~~~~~-----~~~~---~L~~iY~~lk~~~~fEIVwIpiv-D~s~~W~dde~~F~~~~~~MPWyAVpf 399 (658)
++|-|+|.|... ||.- .+++ .+.++.|+- |||+- |+ |.+...+.
T Consensus 36 e~KpIfl~ig~~-~C~wChvM~~esf~d~eVa~~lN~~---------FI~VkvDr-----ee~Pdid~------------ 88 (163)
T PF03190_consen 36 ENKPIFLSIGYS-WCHWCHVMERESFSDPEVAEYLNRN---------FIPVKVDR-----EERPDIDK------------ 88 (163)
T ss_dssp HT--EEEEEE-T-T-HHHHHHHHHTTT-HHHHHHHHHH----------EEEEEET-----TT-HHHHH------------
T ss_pred cCCcEEEEEEec-CCcchhhhcccCcCCHHHHHHHhCC---------EEEEEecc-----ccCccHHH------------
Confidence 478999999999 9842 2333 356666653 67762 21 11111221
Q ss_pred CCCCcHHHHHHHHHhhccCCceEEEEECCCCceec
Q 046837 400 PAMIQPAVIKYVKEEWKYSKKAIIVSVDPQGRILN 434 (658)
Q Consensus 400 ~~~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~ 434 (658)
....+..-..+..|=|+-|+|+|+|+.+.
T Consensus 89 ------~y~~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 89 ------IYMNAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp ------HHHHHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred ------HHHHHHHHhcCCCCCCceEEECCCCCeee
Confidence 22223333346779999999999999864
No 199
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=40.43 E-value=59 Score=27.61 Aligned_cols=43 Identities=9% Similarity=-0.049 Sum_probs=32.6
Q ss_pred CCcEEEEEccCC-chHHHHHHHHHHHHHhhc-C-CceeEEEeeccC
Q 046837 484 EERFICLYGGND-EAWIRKFRNSAKDVASKA-Q-INWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~-~-~~~E~v~Vgkdn 526 (658)
.||.+.|+|.++ -.+|+.|.+.+.++++.. + ..+.++.|..+.
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 678999988885 367799999999998753 2 367777777653
No 200
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=40.09 E-value=49 Score=29.06 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=32.0
Q ss_pred hhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcC------CceeEEEeeccC
Q 046837 480 EWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQ------INWGMAYVGKKN 526 (658)
Q Consensus 480 ~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~------~~~E~v~Vgkdn 526 (658)
+-+++++.++++|.+.+ ..|++|.+.+.++++... ..+.+..|.-|+
T Consensus 13 ~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~ 66 (108)
T cd02996 13 DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK 66 (108)
T ss_pred HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 34678899999999942 345888888887765421 246666676653
No 201
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=39.55 E-value=1.4e+02 Score=33.18 Aligned_cols=26 Identities=31% Similarity=0.745 Sum_probs=18.6
Q ss_pred CCCCCceeeCCCCCcc---c------ceeeeecc-C
Q 046837 631 NGAIPGTVQCADCGRD---M------EMFFMYHC-C 656 (658)
Q Consensus 631 ~g~ip~~i~CpeC~R~---M------E~~v~Y~C-C 656 (658)
.+..|=...||+|||. + ...|.|+| |
T Consensus 163 ~~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~c 198 (353)
T cd00674 163 ETWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCEC 198 (353)
T ss_pred CCceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCC
Confidence 6778889999999963 1 12277887 5
No 202
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=39.42 E-value=42 Score=28.59 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=26.6
Q ss_pred hhhhhcCCcEEEEEccCC-chHHHHHHHHHHHHHhhc
Q 046837 478 ILEWMKEERFICLYGGND-EAWIRKFRNSAKDVASKA 513 (658)
Q Consensus 478 I~~~i~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~ 513 (658)
+.+.++.++.++++|.++ -..|+++.+.+.++++..
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~ 46 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATEL 46 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 444467889999999885 255688888888886653
No 203
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=38.92 E-value=40 Score=29.92 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=32.8
Q ss_pred cCCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccCh-hhHHHHhhc
Q 046837 483 KEERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKNA-KKRLEEISS 536 (658)
Q Consensus 483 ~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~-~e~v~~~~~ 536 (658)
..||.+.|||.+. -..|+.+.+.+.+++++ ++++.|+-++. .+.++...+
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~~ 69 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFMQ 69 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHHH
Confidence 3789999999873 24458888888888755 56666665532 445544443
No 204
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=38.77 E-value=79 Score=33.51 Aligned_cols=87 Identities=8% Similarity=0.077 Sum_probs=55.2
Q ss_pred cccccCcEEEEEEecCCCCC--hHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 046837 325 IHVLKKKHVLLLISRPDDIS--QEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAM 402 (658)
Q Consensus 325 Is~L~gK~VlLyfSa~~~~~--~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~ 402 (658)
|..|.+++=++||-.. +|| ..+.++|..+=++- .++|+-||++. .-...|.+. -+
T Consensus 138 i~~la~~~GL~fFy~s-~Cp~C~~~aPil~~fa~~y----g~~v~~VS~DG------~~~p~fp~~----------~~-- 194 (248)
T PRK13703 138 IAKLAEHYGLMFFYRG-QDPIDGQLAQVINDFRDTY----GLSVIPVSVDG------VINPLLPDS----------RT-- 194 (248)
T ss_pred HHHHHhcceEEEEECC-CCchhHHHHHHHHHHHHHh----CCeEEEEecCC------CCCCCCCCC----------cc--
Confidence 4456667777788888 885 45677888776665 49999999831 111112111 11
Q ss_pred CcHHHHHHHHHhhccCCceEEEEECCCCceeccchHH
Q 046837 403 IQPAVIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFH 439 (658)
Q Consensus 403 i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~ 439 (658)
|.. ..+.++++..|.|++++|+++..-+=|.+
T Consensus 195 -d~g----qa~~l~v~~~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 195 -DQG----QAQRLGVKYFPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred -Chh----HHHhcCCcccceEEEEECCCCcEEEEeec
Confidence 121 12579999999999999987555444443
No 205
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.16 E-value=15 Score=31.44 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=13.6
Q ss_pred CCceeeCCCCCcccce
Q 046837 634 IPGTVQCADCGRDMEM 649 (658)
Q Consensus 634 ip~~i~CpeC~R~ME~ 649 (658)
..-++.||.||++.+-
T Consensus 4 ~~~~v~CP~Cgkpv~w 19 (65)
T COG3024 4 LRITVPCPTCGKPVVW 19 (65)
T ss_pred ccccccCCCCCCcccc
Confidence 3568999999999887
No 206
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=37.13 E-value=54 Score=29.02 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCchHH---HHHHHHHHHHHhhcCCceeEEEeec
Q 046837 484 EERFICLYGGNDEAWI---RKFRNSAKDVASKAQINWGMAYVGK 524 (658)
Q Consensus 484 egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~~~~E~v~Vgk 524 (658)
.||.+.++|.+ .|| +.+.+.+.++++..+ .+..+-|..
T Consensus 17 ~g~~vlV~F~a--~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~ 57 (100)
T cd02999 17 REDYTAVLFYA--SWCPFSASFRPHFNALSSMFP-QIRHLAIEE 57 (100)
T ss_pred CCCEEEEEEEC--CCCHHHHhHhHHHHHHHHHhc-cCceEEEEC
Confidence 89999999999 665 999999999987643 345555543
No 207
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=36.90 E-value=2.2e+02 Score=29.39 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCCCChHHHH--HHHHHHHHhcCCCCeeEEEE--eccc-CC-------Ccchh--hHHHHHHhhcCCCce
Q 046837 330 KKHVLLLISRPDDISQEEIL--FLSNMYKDLKESKECRIVWL--PIVD-GS-------IDRQQ--ALDKFKNLQKRMPWY 395 (658)
Q Consensus 330 gK~VlLyfSa~~~~~~~~~~--~L~~iY~~lk~~~~fEIVwI--pivD-~s-------~~W~d--de~~F~~~~~~MPWy 395 (658)
||++...||+. .||-|.-. .|.++- +.+.+|.++ |+.. ++ .-|-. ..+.|+..+..-+
T Consensus 107 ~k~~I~vFtDp-~CpyCkkl~~~l~~~~-----~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~-- 178 (232)
T PRK10877 107 EKHVITVFTDI-TCGYCHKLHEQMKDYN-----ALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD-- 178 (232)
T ss_pred CCEEEEEEECC-CChHHHHHHHHHHHHh-----cCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC--
Confidence 78889999999 99866322 233321 134667665 5421 11 01322 3345655443321
Q ss_pred eecCCC-CCcHHHHHHHHHhhccCCceEEEEECCCCcee
Q 046837 396 SIQDPA-MIQPAVIKYVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 396 AVpf~~-~i~~~~~r~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
++-.. ..+.+....+-+.++++|.|++|+ ++|+++
T Consensus 179 -~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 179 -VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred -CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 11111 113345667779999999999995 468776
No 208
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=36.31 E-value=57 Score=31.32 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=27.4
Q ss_pred hhhhhcCCcEEEEEccCCc-hHHHHHHHHH---HHHHhhcCCceeEEEe
Q 046837 478 ILEWMKEERFICLYGGNDE-AWIRKFRNSA---KDVASKAQINWGMAYV 522 (658)
Q Consensus 478 I~~~i~egK~I~LYgg~d~-~Wir~FT~~~---~~i~~~~~~~~E~v~V 522 (658)
+...-++||.|+||+++|+ .||+++.... .+|++.++..|=+|.+
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l 64 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNL 64 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEE
Confidence 3333569999999999963 6666666433 3444444445644433
No 209
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=36.10 E-value=58 Score=29.23 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=31.5
Q ss_pred CCcEEEEEccCCchHH---HHHHHHHHHHHhhc-CCceeEEEeeccC
Q 046837 484 EERFICLYGGNDEAWI---RKFRNSAKDVASKA-QINWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~-~~~~E~v~Vgkdn 526 (658)
.||.+.++|-+ .|| +.+.+.+.++++.. +..+.++.|.-++
T Consensus 23 ~~~~vlV~F~a--~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~ 67 (111)
T cd02963 23 FKKPYLIKITS--DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH 67 (111)
T ss_pred CCCeEEEEEEC--CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc
Confidence 78999999999 666 88888888887764 3357777776653
No 210
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=36.03 E-value=33 Score=28.34 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=20.7
Q ss_pred Cccc-eeccCCCCCCCceeeCCCCCccccee
Q 046837 621 HCNR-LILAGVNGAIPGTVQCADCGRDMEMF 650 (658)
Q Consensus 621 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~ 650 (658)
.|.. +.+|.... -+.+.||+||-..|+.
T Consensus 7 ~CG~~iev~~~~~--GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 7 DCGAEIELENPEL--GELVICDECGAELEVV 35 (54)
T ss_pred CCCCEEecCCCcc--CCEEeCCCCCCEEEEE
Confidence 3666 67775432 7788999999999884
No 211
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=34.83 E-value=41 Score=35.63 Aligned_cols=41 Identities=2% Similarity=-0.100 Sum_probs=33.4
Q ss_pred CCcEEEEEccCC-chHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 484 EERFICLYGGND-EAWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
.||++.+||.+. -..|+++.+.+.+++++.+ ++++.|+.|.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~ 206 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDG 206 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCC
Confidence 699999999883 2334999999999988755 8899999884
No 212
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=34.72 E-value=24 Score=30.67 Aligned_cols=25 Identities=28% Similarity=0.713 Sum_probs=16.5
Q ss_pred CCCceeeCCCCCccccee-----eeeccCC
Q 046837 633 AIPGTVQCADCGRDMEMF-----FMYHCCP 657 (658)
Q Consensus 633 ~ip~~i~CpeC~R~ME~~-----v~Y~CCh 657 (658)
+......||+||.++|+- +.|-|=|
T Consensus 26 ~~~~~a~CPdC~~~Le~LkACGAvdYFC~~ 55 (70)
T PF07191_consen 26 DYKKEAFCPDCGQPLEVLKACGAVDYFCNH 55 (70)
T ss_dssp EEEEEEE-TTT-SB-EEEEETTEEEEE-TT
T ss_pred cceecccCCCcccHHHHHHHhcccceeecc
Confidence 456778999999999995 7787744
No 213
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=34.43 E-value=95 Score=28.19 Aligned_cols=51 Identities=8% Similarity=0.217 Sum_probs=32.9
Q ss_pred hhhhhcCCcEEEEEccC-CchHHHHHHHHHHHHHhhc-CCceeEEEeeccChh
Q 046837 478 ILEWMKEERFICLYGGN-DEAWIRKFRNSAKDVASKA-QINWGMAYVGKKNAK 528 (658)
Q Consensus 478 I~~~i~egK~I~LYgg~-d~~Wir~FT~~~~~i~~~~-~~~~E~v~Vgkdn~~ 528 (658)
+++....++.|.+++.+ .-.-|++-.+.+.+++++. +..++++.|+.|++.
T Consensus 17 l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 17 LSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred hHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 34432345676776644 3455577777777776653 457999999988653
No 214
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=34.32 E-value=4.9e+02 Score=30.22 Aligned_cols=163 Identities=15% Similarity=0.097 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHH-HHhhcCCCceeecCCCCCcHHHHHHHHHhhccCCceE
Q 046837 344 SQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKF-KNLQKRMPWYSIQDPAMIQPAVIKYVKEEWKYSKKAI 422 (658)
Q Consensus 344 ~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F-~~~~~~MPWyAVpf~~~i~~~~~r~ike~f~~~~iP~ 422 (658)
.++....|.++.++|+ +..++++.- |.+.+..++-++| +++.+-=|.+.+.+-+. ..-+.+.+.|+++..|.
T Consensus 350 ~~~~~~~l~~~~~~l~--~~v~l~~~~--~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~---~~~~~~~~~~~v~~~P~ 422 (555)
T TIGR03143 350 DDSLRQQLVGIFGRLE--NPVTLLLFL--DGSNEKSAELQSFLGEFASLSEKLNSEAVNR---GEEPESETLPKITKLPT 422 (555)
T ss_pred CHHHHHHHHHHHHhcC--CCEEEEEEE--CCCchhhHHHHHHHHHHHhcCCcEEEEEecc---ccchhhHhhcCCCcCCE
Confidence 3444556888888775 677775543 2232344444455 44444448888766432 12345556799999999
Q ss_pred EEEECCCCceeccchHHHHHHhCC-ccccCChhhHHHhhhcCCCchhhcccCCChhhhhhhc--CCc-EEEEEccCCchH
Q 046837 423 IVSVDPQGRILNQNAFHTLWIWGI-SAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMK--EER-FICLYGGNDEAW 498 (658)
Q Consensus 423 LVvL~pqGkv~~~nA~~mI~~wG~-~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~--egK-~I~LYgg~d~~W 498 (658)
+++++.+|+-.+ |.=+|+ .++-|++-=+.-+..--.= .+++..+.+.|+ +++ .|=+|-|..-.+
T Consensus 423 ~~i~~~~~~~~~------i~f~g~P~G~Ef~s~i~~i~~~~~~~------~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~ 490 (555)
T TIGR03143 423 VALLDDDGNYTG------LKFHGVPSGHELNSFILALYNAAGPG------QPLGEELLEKIKKITKPVNIKIGVSLSCTL 490 (555)
T ss_pred EEEEeCCCcccc------eEEEecCccHhHHHHHHHHHHhcCCC------CCCCHHHHHHHHhcCCCeEEEEEECCCCCC
Confidence 999986664211 334453 3466644222222111000 123443333333 444 577888888889
Q ss_pred HHHHHHHHHHHHhhc-CCceeEEEeecc
Q 046837 499 IRKFRNSAKDVASKA-QINWGMAYVGKK 525 (658)
Q Consensus 499 ir~FT~~~~~i~~~~-~~~~E~v~Vgkd 525 (658)
|.+=..++.+++... ++..||+-+..-
T Consensus 491 Cp~~~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 491 CPDVVLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 977667777777765 788888877653
No 215
>PRK02935 hypothetical protein; Provisional
Probab=34.16 E-value=21 Score=33.35 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=15.5
Q ss_pred eeeCCCCCccccee-eeeccCC
Q 046837 637 TVQCADCGRDMEMF-FMYHCCP 657 (658)
Q Consensus 637 ~i~CpeC~R~ME~~-v~Y~CCh 657 (658)
.|.||+|+++...- -.+.|-|
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~ 91 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMH 91 (110)
T ss_pred eeECCCCCchhhhccceeecCc
Confidence 46899999988776 5566644
No 216
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=33.89 E-value=1.2e+02 Score=24.83 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=31.6
Q ss_pred EEEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeeccCh
Q 046837 487 FICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNA 527 (658)
Q Consensus 487 ~I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~ 527 (658)
.|-+|.+.+-..|++..+.+.+++++.+..++++.|.-+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~ 42 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN 42 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC
Confidence 35678777778889999999999877666688888876643
No 217
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=33.69 E-value=63 Score=27.40 Aligned_cols=43 Identities=7% Similarity=-0.053 Sum_probs=31.8
Q ss_pred CCcEEEEEccCC-chHHHHHHHHHHHHHhhcC--CceeEEEeeccC
Q 046837 484 EERFICLYGGND-EAWIRKFRNSAKDVASKAQ--INWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~--~~~E~v~Vgkdn 526 (658)
.+|.++++|.++ -..|++|.+.+.++++..+ ..+.++.+.-++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 567889999884 2555899999999887643 467777777664
No 218
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=32.54 E-value=86 Score=28.91 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=33.2
Q ss_pred hcCCcEEEEEccCCchHH---HHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 482 MKEERFICLYGGNDEAWI---RKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 482 i~egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
+++++.+.+.|-+ .|| +.+.+.+.++++..+..+.++-|.-+
T Consensus 26 ~~~~~~vlV~FyA--~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d 70 (113)
T cd03006 26 RTDAEVSLVMYYA--PWDAQSQAARQEFEQVAQKLSDQVLFVAINCW 70 (113)
T ss_pred ccCCCEEEEEEEC--CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 3688999999999 666 89999999998875555666777655
No 219
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=31.27 E-value=21 Score=24.82 Aligned_cols=13 Identities=23% Similarity=0.920 Sum_probs=7.6
Q ss_pred eeeCCCCCcccce
Q 046837 637 TVQCADCGRDMEM 649 (658)
Q Consensus 637 ~i~CpeC~R~ME~ 649 (658)
++.||+||.+.+.
T Consensus 2 ~~~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 2 EMFCPNCGAEIDP 14 (26)
T ss_pred cCCCcccCCcCCc
Confidence 3567777765443
No 220
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=24 Score=33.56 Aligned_cols=14 Identities=36% Similarity=0.817 Sum_probs=11.6
Q ss_pred CCceeeCCCCCccc
Q 046837 634 IPGTVQCADCGRDM 647 (658)
Q Consensus 634 ip~~i~CpeC~R~M 647 (658)
+-+..+||||||.-
T Consensus 95 ~EG~l~CpetG~vf 108 (124)
T KOG1088|consen 95 IEGELVCPETGRVF 108 (124)
T ss_pred ccceEecCCCCcEe
Confidence 56789999999964
No 221
>PF14369 zf-RING_3: zinc-finger
Probab=30.50 E-value=38 Score=25.44 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=14.6
Q ss_pred CCccceeccCCCCCCCceeeCCCCCc
Q 046837 620 KHCNRLILAGVNGAIPGTVQCADCGR 645 (658)
Q Consensus 620 ~~C~~~~~p~~~g~ip~~i~CpeC~R 645 (658)
|.|++.+-+...+ .+.+.||.|+-
T Consensus 6 h~C~~~V~~~~~~--~~~~~CP~C~~ 29 (35)
T PF14369_consen 6 HQCNRFVRIAPSP--DSDVACPRCHG 29 (35)
T ss_pred ccCCCEeEeCcCC--CCCcCCcCCCC
Confidence 6799866653221 12247999973
No 222
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=30.30 E-value=1.1e+02 Score=28.62 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=33.4
Q ss_pred hhhcCCcEEEEEccCCchH---HHHHHHHHHHHHhhcCCceeEEEeeccCh
Q 046837 480 EWMKEERFICLYGGNDEAW---IRKFRNSAKDVASKAQINWGMAYVGKKNA 527 (658)
Q Consensus 480 ~~i~egK~I~LYgg~d~~W---ir~FT~~~~~i~~~~~~~~E~v~Vgkdn~ 527 (658)
+++..|....+.|++++.| |+.+.+.+.+++++.+..+.++.|.-|..
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~ 72 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE 72 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC
Confidence 5566655555555664333 59999999999988666777777777743
No 223
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=30.05 E-value=55 Score=30.48 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=24.5
Q ss_pred HHHHHhhccCCCCCccc--eeccCCCCCCCceeeCCCCCccccee-eeecc
Q 046837 608 ALNNYLQKIHPGKHCNR--LILAGVNGAIPGTVQCADCGRDMEMF-FMYHC 655 (658)
Q Consensus 608 Af~~y~~~~~~~~~C~~--~~~p~~~g~ip~~i~CpeC~R~ME~~-v~Y~C 655 (658)
+++.+|+-......|.. +++- .+|....|++||+..+.- ..+.|
T Consensus 43 ~L~faf~~~~~~t~~ega~L~I~----~~p~~~~C~~Cg~~~~~~~~~~~C 89 (115)
T TIGR00100 43 QLQFAFEVVREGTVAEGAKLNIE----DEPVECECEDCSEEVSPEIDLYRC 89 (115)
T ss_pred HHHHHHHHHhCCCccCCCEEEEE----eeCcEEEcccCCCEEecCCcCccC
Confidence 35555554433334433 4432 467778888888776664 34445
No 224
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=30.00 E-value=90 Score=28.36 Aligned_cols=47 Identities=15% Similarity=0.003 Sum_probs=34.9
Q ss_pred hhhcCCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccCh
Q 046837 480 EWMKEERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKNA 527 (658)
Q Consensus 480 ~~i~egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~ 527 (658)
+.|.+++.|.+||.+++ ..|+...+.+.+++++.. .+-++.|.-++.
T Consensus 17 ~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~ 64 (113)
T cd02989 17 EIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKA 64 (113)
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccC
Confidence 34667889999998843 556999999999987632 367788877753
No 225
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=29.65 E-value=40 Score=28.57 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.2
Q ss_pred CCCCceeeCCCCCcccceeeeec
Q 046837 632 GAIPGTVQCADCGRDMEMFFMYH 654 (658)
Q Consensus 632 g~ip~~i~CpeC~R~ME~~v~Y~ 654 (658)
|+-|..+.||.|+...+.-|.|+
T Consensus 2 ~~~p~~~~CP~C~~~~~T~v~~~ 24 (73)
T PF10601_consen 2 GPEPVRIYCPYCQQQVQTRVEYK 24 (73)
T ss_pred CCCceeeECCCCCCEEEEEEEEE
Confidence 67799999999999998888775
No 226
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=29.41 E-value=32 Score=39.89 Aligned_cols=26 Identities=38% Similarity=0.885 Sum_probs=20.6
Q ss_pred CCCCCceeeCCCCCcccce--------eeeecc-C
Q 046837 631 NGAIPGTVQCADCGRDMEM--------FFMYHC-C 656 (658)
Q Consensus 631 ~g~ip~~i~CpeC~R~ME~--------~v~Y~C-C 656 (658)
.+..|=...||+|||.... .|.|+| |
T Consensus 162 ~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~c 196 (515)
T TIGR00467 162 ENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCEC 196 (515)
T ss_pred CCceeeeeecCCcCccCceEEEecCCceEEEEcCC
Confidence 6778889999999998743 377887 6
No 227
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=29.01 E-value=26 Score=26.67 Aligned_cols=12 Identities=33% Similarity=1.046 Sum_probs=10.8
Q ss_pred eCCCCCccccee
Q 046837 639 QCADCGRDMEMF 650 (658)
Q Consensus 639 ~CpeC~R~ME~~ 650 (658)
.||.|+..|+..
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 599999999986
No 228
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=28.82 E-value=24 Score=26.92 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=9.8
Q ss_pred eeCCCCCcccce
Q 046837 638 VQCADCGRDMEM 649 (658)
Q Consensus 638 i~CpeC~R~ME~ 649 (658)
..||+||..|-.
T Consensus 2 ~~CP~Cg~~lv~ 13 (39)
T PF01396_consen 2 EKCPKCGGPLVL 13 (39)
T ss_pred cCCCCCCceeEE
Confidence 479999998854
No 229
>PRK07218 replication factor A; Provisional
Probab=28.01 E-value=25 Score=39.94 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=5.7
Q ss_pred cEEeccccc
Q 046837 321 TTVQIHVLK 329 (658)
Q Consensus 321 ~kV~Is~L~ 329 (658)
..++|.+|+
T Consensus 57 ~~~kI~Di~ 65 (423)
T PRK07218 57 SSKDIKELS 65 (423)
T ss_pred CCccHhhCC
Confidence 356677766
No 230
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.82 E-value=26 Score=33.10 Aligned_cols=22 Identities=27% Similarity=0.738 Sum_probs=13.6
Q ss_pred ceeeCCCCCccccee-eeeccCC
Q 046837 636 GTVQCADCGRDMEMF-FMYHCCP 657 (658)
Q Consensus 636 ~~i~CpeC~R~ME~~-v~Y~CCh 657 (658)
-.|.||+|||+-... =...|-|
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~ 90 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMH 90 (114)
T ss_pred eeeECCCCCChHhhhchhhccCc
Confidence 356788888876655 3345543
No 231
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=27.81 E-value=74 Score=28.25 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=32.2
Q ss_pred cCCcEEEEEccCC-chHHHHHHHHHHHHHhhcC-CceeEEEeecc
Q 046837 483 KEERFICLYGGND-EAWIRKFRNSAKDVASKAQ-INWGMAYVGKK 525 (658)
Q Consensus 483 ~egK~I~LYgg~d-~~Wir~FT~~~~~i~~~~~-~~~E~v~Vgkd 525 (658)
+.||.+++.|.++ -..|+++.+.+.++++..+ ..+.+..|..|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 4789999999984 2456999999999887643 45777777665
No 232
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=26.72 E-value=40 Score=38.98 Aligned_cols=27 Identities=26% Similarity=0.613 Sum_probs=21.5
Q ss_pred CCCCCceeeCCCCCccccee----------eeecc-CC
Q 046837 631 NGAIPGTVQCADCGRDMEMF----------FMYHC-CP 657 (658)
Q Consensus 631 ~g~ip~~i~CpeC~R~ME~~----------v~Y~C-Ch 657 (658)
.+..|=...||+|||...+- |.|.| |.
T Consensus 169 ~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG 206 (510)
T PRK00750 169 ATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECG 206 (510)
T ss_pred CCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCC
Confidence 67789999999999998643 57777 54
No 233
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.31 E-value=27 Score=28.05 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=5.3
Q ss_pred eCCCCCcccc
Q 046837 639 QCADCGRDME 648 (658)
Q Consensus 639 ~CpeC~R~ME 648 (658)
.||-|||++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7888999985
No 234
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=26.04 E-value=1.4e+02 Score=23.45 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=25.6
Q ss_pred EEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeecc
Q 046837 488 ICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKK 525 (658)
Q Consensus 488 I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkd 525 (658)
|-+|+...-.+|++....+ ++.|+++|.+-|+++
T Consensus 1 V~vy~~~~C~~C~~~~~~L----~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL----DEKGIPYEEVDVDED 34 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH----HHTTBEEEEEEGGGS
T ss_pred cEEEEcCCCcCHHHHHHHH----HHcCCeeeEcccccc
Confidence 5678877777886555555 444999999999998
No 235
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=25.92 E-value=52 Score=25.59 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=10.1
Q ss_pred eeeCCCCCcccc
Q 046837 637 TVQCADCGRDME 648 (658)
Q Consensus 637 ~i~CpeC~R~ME 648 (658)
.+.||.||.++.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 689999998775
No 236
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=25.71 E-value=2.1e+02 Score=27.78 Aligned_cols=61 Identities=28% Similarity=0.400 Sum_probs=44.7
Q ss_pred cchHHHHHHHhccCc--cccCCCCcEEecccccCcEEEEEEecCCCCChHHHHHHHHHHHHhc-CCCCeeEEEEec
Q 046837 299 RDNIKVLRALIYAED--LVDGETRTTVQIHVLKKKHVLLLISRPDDISQEEILFLSNMYKDLK-ESKECRIVWLPI 371 (658)
Q Consensus 299 ~dn~~vlk~Li~~kd--l~~g~~~~kV~Is~L~gK~VlLyfSa~~~~~~~~~~~L~~iY~~lk-~~~~fEIVwIpi 371 (658)
.|..=||+||-.+-| ++.|- ++.+ +=|+|++ ..-.+....|.++-+++- +.+.++.+|||.
T Consensus 41 vn~~fvl~Al~~GaDGV~v~GC-----~~ge------CHy~~GN-~ka~rR~~~lke~l~elgie~eRv~~~wiSa 104 (132)
T COG1908 41 VNPEFVLKALRKGADGVLVAGC-----KIGE------CHYISGN-YKAKRRMELLKELLKELGIEPERVRVLWISA 104 (132)
T ss_pred cCHHHHHHHHHcCCCeEEEecc-----cccc------eeeeccc-hHHHHHHHHHHHHHHHhCCCcceEEEEEEeh
Confidence 566778888887766 44432 2222 7899998 666677778999999984 468999999997
No 237
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=25.66 E-value=29 Score=28.76 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=7.2
Q ss_pred ceeeCCCCCcccce
Q 046837 636 GTVQCADCGRDMEM 649 (658)
Q Consensus 636 ~~i~CpeC~R~ME~ 649 (658)
..-+||+|++++..
T Consensus 23 ~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 23 QPATCPICGAVIRQ 36 (54)
T ss_dssp --EE-TTT--EESS
T ss_pred CCCCCCcchhhccc
Confidence 45689999998764
No 238
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=25.23 E-value=2e+02 Score=31.93 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=104.6
Q ss_pred ChHHHHH-HHHHHHHhc---C-CCCeeEEEEecccCCCcchh---hHHHHHHhhcCCCceeecCCCCCcHHHHHHHHHhh
Q 046837 344 SQEEILF-LSNMYKDLK---E-SKECRIVWLPIVDGSIDRQQ---ALDKFKNLQKRMPWYSIQDPAMIQPAVIKYVKEEW 415 (658)
Q Consensus 344 ~~~~~~~-L~~iY~~lk---~-~~~fEIVwIpivD~s~~W~d---de~~F~~~~~~MPWyAVpf~~~i~~~~~r~ike~f 415 (658)
|..|+.. ....|+=|. . ...|..+=||-++ ...| +...|.|--.=+| +=||.. ..+.-..|-+-|
T Consensus 94 P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDE---VYG~l~~~~~~FtE~tp~~P--sSPYSA--SKAasD~lVray 166 (340)
T COG1088 94 PAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDE---VYGDLGLDDDAFTETTPYNP--SSPYSA--SKAASDLLVRAY 166 (340)
T ss_pred hhhhhhcchHHHHHHHHHHHHhcccceEEEecccc---ccccccCCCCCcccCCCCCC--CCCcch--hhhhHHHHHHHH
Confidence 4567663 777777762 2 2459999999753 3333 2235665444444 567766 567777776666
Q ss_pred cc-CCceEEEEECCCCceeccchHHHHHHhCCccccCChhhHHHhhhcCCCchhhcccCCChhhhhhhcCCcEEEEEc-c
Q 046837 416 KY-SKKAIIVSVDPQGRILNQNAFHTLWIWGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEERFICLYG-G 493 (658)
Q Consensus 416 ~~-~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~egK~I~LYg-g 493 (658)
.- -|+|.++.=.++ .||.--||= .| |-..|.+ ...||.+=||| |
T Consensus 167 ~~TYglp~~ItrcSN-------------NYGPyqfpE-----------------Kl---IP~~I~n-al~g~~lpvYGdG 212 (340)
T COG1088 167 VRTYGLPATITRCSN-------------NYGPYQFPE-----------------KL---IPLMIIN-ALLGKPLPVYGDG 212 (340)
T ss_pred HHHcCCceEEecCCC-------------CcCCCcCch-----------------hh---hHHHHHH-HHcCCCCceecCC
Confidence 55 599998865543 367666653 33 2334443 56999999999 7
Q ss_pred CC-chHH--HHHHHHHHHHHhhcCCceeEEEeeccChh---hHHHHhhcccccccc
Q 046837 494 ND-EAWI--RKFRNSAKDVASKAQINWGMAYVGKKNAK---KRLEEISSSITKTES 543 (658)
Q Consensus 494 ~d-~~Wi--r~FT~~~~~i~~~~~~~~E~v~Vgkdn~~---e~v~~~~~~i~~e~l 543 (658)
.+ -+|+ .+...++..|-.+ |..=|++-||-+|.+ |-|+.+.+.+..++.
T Consensus 213 ~~iRDWl~VeDh~~ai~~Vl~k-g~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~ 267 (340)
T COG1088 213 LQIRDWLYVEDHCRAIDLVLTK-GKIGETYNIGGGNERTNLEVVKTICELLGKDKP 267 (340)
T ss_pred cceeeeEEeHhHHHHHHHHHhc-CcCCceEEeCCCccchHHHHHHHHHHHhCcccc
Confidence 77 4998 7888888888766 777999999998744 456666666655543
No 239
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=24.99 E-value=4.4e+02 Score=26.50 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=60.9
Q ss_pred ecccccCcE-EEEEEecCCCCChHHHHHHHHHHHHhc-CCCCeeEEEEecccCCCcchh---hHHHHHHhhcCCCceeec
Q 046837 324 QIHVLKKKH-VLLLISRPDDISQEEILFLSNMYKDLK-ESKECRIVWLPIVDGSIDRQQ---ALDKFKNLQKRMPWYSIQ 398 (658)
Q Consensus 324 ~Is~L~gK~-VlLyfSa~~~~~~~~~~~L~~iY~~lk-~~~~fEIVwIpivD~s~~W~d---de~~F~~~~~~MPWyAVp 398 (658)
+-..|.||. |.-||-+- -...+--.-|.+.-++.+ .++.|...=|==.|- ..|.- -+.+-+.-+..-||-.+-
T Consensus 31 ~s~~l~GKVrviq~iAGr-~sake~N~~l~~aik~a~f~~d~yqtttIiN~dD-Ai~gt~~fVrss~e~~kk~~p~s~~v 108 (160)
T PF09695_consen 31 NSAQLPGKVRVIQHIAGR-SSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDD-AIWGTGGFVRSSAEDSKKEFPWSQFV 108 (160)
T ss_pred CccccCCCEEEEEEeccC-CchhHhhHHHHHHHHHcCCCccceeEEEEEeccc-ccccchHHHHHHHHHhhhhCCCcEEE
Confidence 445699998 77777554 222222223554444443 235666544322221 12321 455566777889999887
Q ss_pred CCCCCcHHHHHHHHHhhccCCc-eEEEEECCCCceec
Q 046837 399 DPAMIQPAVIKYVKEEWKYSKK-AIIVSVDPQGRILN 434 (658)
Q Consensus 399 f~~~i~~~~~r~ike~f~~~~i-P~LVvL~pqGkv~~ 434 (658)
... +.. ++.-|++... -.+||||.+|+|.-
T Consensus 109 lD~--~G~----~~~aW~L~~~~SaiiVlDK~G~V~F 139 (160)
T PF09695_consen 109 LDS--NGV----VRKAWQLQEESSAIIVLDKQGKVQF 139 (160)
T ss_pred EcC--CCc----eeccccCCCCCceEEEEcCCccEEE
Confidence 744 223 3455999766 78899999999963
No 240
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.98 E-value=1.8e+02 Score=26.06 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=45.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHh-cCCCCeeEEEEecccCCCcchh-hHHHHHHhhcCCCceeecCCCCCcHHHHHHH
Q 046837 334 LLLISRPDDISQEEILFLSNMYKDL-KESKECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMPWYSIQDPAMIQPAVIKYV 411 (658)
Q Consensus 334 lLyfSa~~~~~~~~~~~L~~iY~~l-k~~~~fEIVwIpivD~s~~W~d-de~~F~~~~~~MPWyAVpf~~~i~~~~~r~i 411 (658)
-||+|.+ ||++- +.+ +.| +.+-+||-|=|-- +- .-+.|-.++.+|| .| | -.|.
T Consensus 5 ~lfgsn~--Cpdca-~a~----eyl~rl~v~yd~VeIt~-------Sm~NlKrFl~lRDs~~----~F-d-----~vk~- 59 (85)
T COG4545 5 KLFGSNL--CPDCA-PAV----EYLERLNVDYDFVEITE-------SMANLKRFLHLRDSRP----EF-D-----EVKS- 59 (85)
T ss_pred eeecccc--CcchH-HHH----HHHHHcCCCceeeehhh-------hhhhHHHHHhhhccch----hH-H-----hhhh-
Confidence 4677777 55443 322 223 2256888776552 23 7888999999998 33 2 1233
Q ss_pred HHhhccCCceEEEEECCCCceecc
Q 046837 412 KEEWKYSKKAIIVSVDPQGRILNQ 435 (658)
Q Consensus 412 ke~f~~~~iP~LVvL~pqGkv~~~ 435 (658)
++|-|||.|.+ +||+++--
T Consensus 60 ---~gyiGIPall~--~d~~vVl~ 78 (85)
T COG4545 60 ---NGYIGIPALLT--DDGKVVLG 78 (85)
T ss_pred ---cCcccceEEEe--CCCcEEEe
Confidence 88999999754 78888754
No 241
>PF09767 DUF2053: Predicted membrane protein (DUF2053); InterPro: IPR019164 This family of proteins is conserved from plants to humans. The function is unknown although some annotation suggests that it is a transmembrane protein.
Probab=24.91 E-value=88 Score=31.10 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=41.4
Q ss_pred hhcchhhhhhc---cCccHHHHHHHHHhCCCCCCCCCCCCCccchHHhHHHHHHHHHhhHHHhc
Q 046837 135 NYGEFWLVAQL---CTQNSLANSVAVLKQLPEIPTGYDALKPQFDELNNLIGAMLDLTNCIVEF 195 (658)
Q Consensus 135 ~YGeFwlL~q~---~~~n~LakSlA~Lkqlp~i~~~~~~lk~~~~~ln~LVk~m~dV~~cIie~ 195 (658)
|||.||.+.|- |--.|+.|.+.+=.=+|..- -.-++.+++++|...|++..+-=.
T Consensus 27 E~~~~~~~~~~~~~Y~~tql~Kml~lATf~P~~~------~~~~~~~~eilk~~~d~~Dl~gi~ 84 (159)
T PF09767_consen 27 EYGAFWKCLQAGIGYILTQLCKMLLLATFFPSSD------SSTFDFIQEILKSSVDLIDLIGIY 84 (159)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------cccchHHHHHHHHHHHHHHHHHHH
Confidence 78888888884 56778999988777888432 134678899999999988766433
No 242
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=24.80 E-value=6.1e+02 Score=28.99 Aligned_cols=157 Identities=11% Similarity=0.174 Sum_probs=85.4
Q ss_pred CCChHHHHHHHHHHHHhcCCCCeeEEEEecccCCCcch-------------h-hHHHHHHhhcCCCceeecCCCCCcHHH
Q 046837 342 DISQEEILFLSNMYKDLKESKECRIVWLPIVDGSIDRQ-------------Q-ALDKFKNLQKRMPWYSIQDPAMIQPAV 407 (658)
Q Consensus 342 ~~~~~~~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~-------------d-de~~F~~~~~~MPWyAVpf~~~i~~~~ 407 (658)
+..+..+..|.++.+++- .+++.+|-. | .+| + .-+.++..-+. .+.|-+....-...
T Consensus 171 ~~~~~D~~ei~~lL~~~G----l~v~~~~d~--~-~~d~~~~~~~~~~~~g~~~~~~i~~~~~A--~~niv~~~~~~~~~ 241 (454)
T cd01973 171 WVNPGDVVELKHYLSEMD----VEANILMDT--E-DFDSPMLPDKSAVTHGNTTIEDIADSANA--IATIALARYEGGKA 241 (454)
T ss_pred CCChHHHHHHHHHHHHcC----CCEEEeecc--c-cccCCCCCcccccCCCCCCHHHHHHhhhC--cEEEEEChhhhHHH
Confidence 445666777777777763 777777521 1 111 2 33344433332 34444422113467
Q ss_pred HHHHHHhhccCCceEEEEECCCCceeccchHHHHHH-hCCccccCChhhHHHhhhcCCCchhhcccCCChhhhhhhcCCc
Q 046837 408 IKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWI-WGISAFPFTAETEEALWKEKPWTLELLVGDIDATILEWMKEER 486 (658)
Q Consensus 408 ~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~-wG~~AFPFT~~r~eeL~~~e~w~le~Lv~~id~~I~~~i~egK 486 (658)
.++|+|+| |+|.+++--|=|---+..-+.-|-+ .|.+. | +.+.+++.+.++.+++-.+. ...||
T Consensus 242 A~~Le~~f---GiPyi~~~~P~G~~~T~~~l~~ia~~~g~~~-~------e~i~~er~~~~~~~~~~~~~-----~l~Gk 306 (454)
T cd01973 242 AEFLQKKF---DVPAILGPTPIGIKNTDAFLQNIKELTGKPI-P------ESLVRERGIAIDALADLAHM-----FFANK 306 (454)
T ss_pred HHHHHHHH---CCCeeccCCCcChHHHHHHHHHHHHHHCCCC-C------HHHHHHHHHHHHHHHHHHHH-----HhCCC
Confidence 88999999 6788765457786666665554444 47553 2 33444443333333210111 13799
Q ss_pred EEEEEccCCchHHHHHHHHHHHHHhhcCCceeEEEeeccChh
Q 046837 487 FICLYGGNDEAWIRKFRNSAKDVASKAQINWGMAYVGKKNAK 528 (658)
Q Consensus 487 ~I~LYgg~d~~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~ 528 (658)
.+.|||+. ++...++.-+. +.|.....+.++.+++.
T Consensus 307 rv~i~g~~--~~~~~l~~fl~----elGm~~~~~~~~~~~~~ 342 (454)
T cd01973 307 KVAIFGHP--DLVIGLAEFCL----EVEMKPVLLLLGDDNSK 342 (454)
T ss_pred eEEEEcCH--HHHHHHHHHHH----HCCCeEEEEEECCCCcc
Confidence 99999866 44433333333 34777777778876544
No 243
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.25 E-value=41 Score=25.29 Aligned_cols=20 Identities=30% Similarity=0.745 Sum_probs=13.2
Q ss_pred eeccCCCCCCCce---eeCCCCCcc
Q 046837 625 LILAGVNGAIPGT---VQCADCGRD 646 (658)
Q Consensus 625 ~~~p~~~g~ip~~---i~CpeC~R~ 646 (658)
+.+| ...||+. +.|+.||..
T Consensus 12 y~i~--d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 12 YEID--DEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EeCC--HHHCCCCCcEEECCCCCCE
Confidence 5555 3445554 999999864
No 244
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.77 E-value=35 Score=27.03 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=9.3
Q ss_pred eeCCCCCcccc
Q 046837 638 VQCADCGRDME 648 (658)
Q Consensus 638 i~CpeC~R~ME 648 (658)
-.||-|||||.
T Consensus 9 K~C~~C~rpf~ 19 (42)
T PF10013_consen 9 KICPVCGRPFT 19 (42)
T ss_pred CcCcccCCcch
Confidence 46999999985
No 245
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=23.43 E-value=4e+02 Score=21.56 Aligned_cols=85 Identities=8% Similarity=-0.093 Sum_probs=42.4
Q ss_pred EEEecCCCCChHHHH--HHHHHHHHhcCCCCeeEEEEecccCCCc--chh-hHHHHHHhhcCCCceeecCCCCCcHHHHH
Q 046837 335 LLISRPDDISQEEIL--FLSNMYKDLKESKECRIVWLPIVDGSID--RQQ-ALDKFKNLQKRMPWYSIQDPAMIQPAVIK 409 (658)
Q Consensus 335 LyfSa~~~~~~~~~~--~L~~iY~~lk~~~~fEIVwIpivD~s~~--W~d-de~~F~~~~~~MPWyAVpf~~~i~~~~~r 409 (658)
.+|++. .||.|... .|.++-. ....+.+++|.|+.-.... .+. ........... ...-.+-+ .-.-.
T Consensus 2 ~~f~d~-~Cp~C~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~l~~~ 73 (98)
T cd02972 2 VEFFDP-LCPYCYLFEPELEKLLY--ADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQ--GKFEALHE---ALADT 73 (98)
T ss_pred eEEECC-CCHhHHhhhHHHHHHHh--hcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHc--CcHHHHHH---HHHHH
Confidence 467777 88776543 3544431 2257899999987422110 111 11111111110 00011100 00233
Q ss_pred HHHHhhccCCceEEEEEC
Q 046837 410 YVKEEWKYSKKAIIVSVD 427 (658)
Q Consensus 410 ~ike~f~~~~iP~LVvL~ 427 (658)
.+-+.+++.|.|++|+-|
T Consensus 74 ~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 74 ALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHcCCCCCCEEEECC
Confidence 455779999999999977
No 246
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=23.38 E-value=4.4e+02 Score=27.96 Aligned_cols=147 Identities=24% Similarity=0.320 Sum_probs=78.6
Q ss_pred HhccCCcchHHHHHHHhccCccccCCCCcEEecc-cccCcE--EEEEEecCCCCChHHHHH-HHHHHHHhcCC--CCeeE
Q 046837 293 ILGKHNRDNIKVLRALIYAEDLVDGETRTTVQIH-VLKKKH--VLLLISRPDDISQEEILF-LSNMYKDLKES--KECRI 366 (658)
Q Consensus 293 lf~~~~~dn~~vlk~Li~~kdl~~g~~~~kV~Is-~L~gK~--VlLyfSa~~~~~~~~~~~-L~~iY~~lk~~--~~fEI 366 (658)
+|..| +-..+-=++|.+++=.-....|+++.+. .|+||. |+|+|++. .++.+.- .....++...+ +.+.+
T Consensus 85 ~f~ap-~~l~~~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~---ge~~~~sw~~p~~~~~~~~~~~~~q~ 160 (252)
T PF05176_consen 85 IFIAP-PSLFKADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAW---GEEMVDSWTSPFLEDFLQEPYGRVQI 160 (252)
T ss_pred cccCC-cccCcHHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHH---HHHHHHHHhhHHHHHHhhCCCCceEE
Confidence 44444 3444444555554211111234456655 589998 66666554 3322221 11222232222 38999
Q ss_pred EEEecccCCCcchh--hHHHH-HHhhcCCC---c--eeecCCCCCcHHHHHHHHHhhccCCc--eEEEEECCCCceeccc
Q 046837 367 VWLPIVDGSIDRQQ--ALDKF-KNLQKRMP---W--YSIQDPAMIQPAVIKYVKEEWKYSKK--AIIVSVDPQGRILNQN 436 (658)
Q Consensus 367 VwIpivD~s~~W~d--de~~F-~~~~~~MP---W--yAVpf~~~i~~~~~r~ike~f~~~~i--P~LVvL~pqGkv~~~n 436 (658)
|-|++.+ .|=- -..-| ..+++.+| | |.+-+.+ .....++|..++.+. .-+-++|++||+
T Consensus 161 v~In~~e---~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~----~~~~~iRe~Lgi~N~~~GYvyLVD~~grI---- 229 (252)
T PF05176_consen 161 VEINLIE---NWLKSWLVKLFMGSLRKSIPEERHDRYFIVYRG----QLSDDIREALGINNSYVGYVYLVDPNGRI---- 229 (252)
T ss_pred EEEecch---HHHHHHHHHHHhhhhhccCCHHHCceEEEEeCC----cccHHHHHHhCCCCCCcCeEEEECCCCeE----
Confidence 9999965 2321 22333 23445554 2 3333322 235678888888754 678899999998
Q ss_pred hHHHHHHhCCccccCChhhHHHhhh
Q 046837 437 AFHTLWIWGISAFPFTAETEEALWK 461 (658)
Q Consensus 437 A~~mI~~wG~~AFPFT~~r~eeL~~ 461 (658)
+|-.-++| |++..+.||+
T Consensus 230 ------RWagsG~A-t~~E~~~L~k 247 (252)
T PF05176_consen 230 ------RWAGSGPA-TPEELESLWK 247 (252)
T ss_pred ------EeCccCCC-CHHHHHHHHH
Confidence 56665554 6667777765
No 247
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=23.34 E-value=2.2e+02 Score=22.15 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=14.6
Q ss_pred HHHHhhccCCceEEEEECCCCcee
Q 046837 410 YVKEEWKYSKKAIIVSVDPQGRIL 433 (658)
Q Consensus 410 ~ike~f~~~~iP~LVvL~pqGkv~ 433 (658)
.+.+.+++.+.|++++- |+++
T Consensus 41 ~~~~~~~~~~vP~~~~~---~~~~ 61 (74)
T TIGR02196 41 EVLKVLGQRGVPVIVIG---HKII 61 (74)
T ss_pred HHHHHhCCCcccEEEEC---CEEE
Confidence 34456788999999873 6553
No 248
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.23 E-value=31 Score=36.44 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=17.2
Q ss_pred CCCc--cceeccCC-CC---CCCceeeCCCCCccc
Q 046837 619 GKHC--NRLILAGV-NG---AIPGTVQCADCGRDM 647 (658)
Q Consensus 619 ~~~C--~~~~~p~~-~g---~ip~~i~CpeC~R~M 647 (658)
.+-| ||..+|.. .. .=-+.|.||.|||..
T Consensus 197 g~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRIL 231 (239)
T COG1579 197 GRVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRIL 231 (239)
T ss_pred CCcccCCeeeecHHHHHHHhcCCCCccCCccchHH
Confidence 3445 56777721 11 224567899999863
No 249
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=23.06 E-value=36 Score=42.47 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=19.5
Q ss_pred eeeCCCCCcccceeeeeccCCC
Q 046837 637 TVQCADCGRDMEMFFMYHCCPE 658 (658)
Q Consensus 637 ~i~CpeC~R~ME~~v~Y~CCh~ 658 (658)
...||+|+||.|-.-.|-||-+
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~ 817 (1006)
T PRK12775 796 VATCPKCHRPLEGDEEYVCCAT 817 (1006)
T ss_pred CccCcccCCCCCCCceeEEecC
Confidence 3589999999999999999964
No 250
>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family. Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.
Probab=22.77 E-value=28 Score=39.15 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=39.9
Q ss_pred ceeccccchHHHHHHhhcc-chhhhhhccHHHHHHHHhhcc-CCCCCccceeccCCCCCCCceeeCCCCCcccceeeeec
Q 046837 577 ETARAKGTAAIDCMEKFHE-WQDDALRNGFIQALNNYLQKI-HPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFFMYH 654 (658)
Q Consensus 577 ~~~~g~G~~~~~~l~~f~~-Wk~~v~~kGF~~Af~~y~~~~-~~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~v~Y~ 654 (658)
+...+++.-++.+-.+=-. |+.++.+.|+++.=...|-+. +.-|| -..-+|--|||.|....+|-
T Consensus 33 ~~~s~~~~gF~~~~q~R~aWw~~Ka~elGi~~~~~~~~s~~ar~IHP-------------T~~kpC~~CG~~m~i~Y~Yp 99 (424)
T TIGR02986 33 QVSSKKTTGFYTYYQARRAWWEQKADELGIPSIENGRYSKAARLIHP-------------TGVKPCQTCGKTMSLGYSYP 99 (424)
T ss_pred EecCCCCccchHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhCC-------------CCCcchHhcCCeeeeeeecC
Confidence 6666666667766544444 788999889985423333331 11111 12235777999999998883
No 251
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=22.36 E-value=98 Score=34.36 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=40.1
Q ss_pred CcEEEEEEecCCCCC----------hHHHH-HHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHHhhcCCCceeec
Q 046837 330 KKHVLLLISRPDDIS----------QEEIL-FLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQ 398 (658)
Q Consensus 330 gK~VlLyfSa~~~~~----------~~~~~-~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~~~~~MPWyAVp 398 (658)
++.|.++|||| ..| +.|+. ....|-++|+.+..|..+|=|-| .-|||++=.
T Consensus 225 r~~VVIlFSAH-slPms~Vn~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkV-----------------GP~pWL~p~ 286 (395)
T KOG1321|consen 225 RDDVVILFSAH-SLPMSVVNAGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKV-----------------GPLPWLGPA 286 (395)
T ss_pred cccEEEEEecC-CCcHHHHhcCCCcHHHHHHHHHHHHHHhccCCcchhhhhccc-----------------CCccccccc
Confidence 56788999999 765 34554 37778889988899999998865 579999843
Q ss_pred C
Q 046837 399 D 399 (658)
Q Consensus 399 f 399 (658)
-
T Consensus 287 T 287 (395)
T KOG1321|consen 287 T 287 (395)
T ss_pred h
Confidence 3
No 252
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=22.31 E-value=59 Score=27.16 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.4
Q ss_pred CceeeCCCCCcccceeeeec
Q 046837 635 PGTVQCADCGRDMEMFFMYH 654 (658)
Q Consensus 635 p~~i~CpeC~R~ME~~v~Y~ 654 (658)
|..+.||.|+..+..-|.|+
T Consensus 1 p~~i~Cp~C~~~~~T~v~~~ 20 (67)
T smart00714 1 PYQLFCPRCQNNVTTRVETE 20 (67)
T ss_pred CcceECCCCCCEEEEEEEEE
Confidence 67899999999999888775
No 253
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=21.89 E-value=2e+02 Score=27.09 Aligned_cols=64 Identities=5% Similarity=-0.058 Sum_probs=36.5
Q ss_pred CCeeEEEEecccCCCcchh-hHHHHHHhhcCCCceeecCCCCCc---HHHHHHHHHhhccCCceEEEEECCC
Q 046837 362 KECRIVWLPIVDGSIDRQQ-ALDKFKNLQKRMPWYSIQDPAMIQ---PAVIKYVKEEWKYSKKAIIVSVDPQ 429 (658)
Q Consensus 362 ~~fEIVwIpivD~s~~W~d-de~~F~~~~~~MPWyAVpf~~~i~---~~~~r~ike~f~~~~iP~LVvL~pq 429 (658)
..|+|+-||+...+..=.+ -++-++.+.+. .+.|-..+.-+ ..+.|| ..|+..|+|.-+++||+
T Consensus 26 AP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~--gi~v~~D~r~~~~~~~G~k~--~~~dliGiP~~I~IG~~ 93 (128)
T cd02426 26 APYKVAIDCGKGDTAELRDLCQGLKNELREA--GLSVWPGYLETQHSSLEQLL--DKYDEMGVLFTLLISEQ 93 (128)
T ss_pred CCeEEEEEeccCChHHHHHHHHHHHHHHHHc--CCEEEeccCcccccCHHHHH--HhhhhcCCCEEEEECCC
Confidence 6788888888321100011 22334455443 34444333222 356665 56899999999999975
No 254
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=21.72 E-value=1.9e+02 Score=23.32 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=32.1
Q ss_pred EecccccCcEEEEEEecCCCCChHH--HHHHHHHHHHhcCCCCeeEEEEec
Q 046837 323 VQIHVLKKKHVLLLISRPDDISQEE--ILFLSNMYKDLKESKECRIVWLPI 371 (658)
Q Consensus 323 V~Is~L~gK~VlLyfSa~~~~~~~~--~~~L~~iY~~lk~~~~fEIVwIpi 371 (658)
.....++++.+.+.|-+. ||+.|. .+.|.++.++... ..+++.|-.
T Consensus 25 ~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~ 72 (127)
T COG0526 25 LSLSELKGKPVLVDFWAP-WCPPCRAEAPLLEELAEEYGG--DVEVVAVNV 72 (127)
T ss_pred eehhhcCCceEEEEEEcC-cCHHHHhhchhHHHHHHHhcC--CcEEEEEEC
Confidence 344444578888876688 998765 4678888888753 567777665
No 255
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=21.71 E-value=2.7e+02 Score=30.34 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=55.5
Q ss_pred ccccCCCCcEEecccccCcEEEE----EEecCCCCChHH-HHHHHHHHHHhcCCCCeeEEEEecccCCCcchhhHHHHHH
Q 046837 313 DLVDGETRTTVQIHVLKKKHVLL----LISRPDDISQEE-ILFLSNMYKDLKESKECRIVWLPIVDGSIDRQQALDKFKN 387 (658)
Q Consensus 313 dl~~g~~~~kV~Is~L~gK~VlL----yfSa~~~~~~~~-~~~L~~iY~~lk~~~~fEIVwIpivD~s~~W~dde~~F~~ 387 (658)
|+=.|.+.++.+.-+-.++.+.| |+++. ..-..+ ..--.+++.+++...+||.|||. |+ .-|...+..-++
T Consensus 188 d~~~~k~~KrFDFvi~~~~k~y~IE~NFY~~g-GSKlne~ArsY~~la~~~~~~~~~~FvWIT--DG-~GW~sak~~L~E 263 (286)
T PF04556_consen 188 DLSVGKSEKRFDFVIKTNKKIYLIETNFYGSG-GSKLNETARSYKELAQEIKSIDGFEFVWIT--DG-KGWKSAKNPLRE 263 (286)
T ss_pred cccCCCCceEEEEEEEcCCEEEEEEEeeecCC-CCcHHHHHHHHHHHHHHHhhcCCcEEEEEE--eC-hhHHhhHhHHHH
Confidence 34347777778877755555554 45665 433444 44588888888878999999998 54 468668888888
Q ss_pred hhcCCCce
Q 046837 388 LQKRMPWY 395 (658)
Q Consensus 388 ~~~~MPWy 395 (658)
.+..||.+
T Consensus 264 af~~i~~i 271 (286)
T PF04556_consen 264 AFDHIDHI 271 (286)
T ss_pred HHHhhhHh
Confidence 88888764
No 256
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.67 E-value=1.3e+02 Score=28.19 Aligned_cols=81 Identities=17% Similarity=0.389 Sum_probs=60.4
Q ss_pred EEEecccCCCcchhhHHHHHHhhcCCCceeecCCCCCcHH---HHHHHHHhhccCCceEEEEECCCCceeccchHHHHHH
Q 046837 367 VWLPIVDGSIDRQQALDKFKNLQKRMPWYSIQDPAMIQPA---VIKYVKEEWKYSKKAIIVSVDPQGRILNQNAFHTLWI 443 (658)
Q Consensus 367 VwIpivD~s~~W~dde~~F~~~~~~MPWyAVpf~~~i~~~---~~r~ike~f~~~~iP~LVvL~pqGkv~~~nA~~mI~~ 443 (658)
||++- +++-+.........|=.+|.||...|-. ..+.|+|+++|+|. |=.-|.|+- |=+.++..
T Consensus 2 v~l~~-------d~~~~~l~~~L~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~Ge-----lRA~Gdvl~-DQl~~l~R 68 (110)
T PF06073_consen 2 VWLAP-------DDDPEELADDLDRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGE-----LRAVGDVLR-DQLFYLRR 68 (110)
T ss_pred eecCC-------CCCHHHHHhhccCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCc-----EEEeccchH-HHHHHHHH
Confidence 67775 2366677888899999999999977765 56789999999998 333466664 55566889
Q ss_pred hCCccccCChhhHHHhh
Q 046837 444 WGISAFPFTAETEEALW 460 (658)
Q Consensus 444 wG~~AFPFT~~r~eeL~ 460 (658)
=|.++|-.+...--+.|
T Consensus 69 ~GFdsf~l~~~~~~~~~ 85 (110)
T PF06073_consen 69 CGFDSFELREDQDPEDA 85 (110)
T ss_pred cCCCEEEeCCCCCHHHH
Confidence 99999999864443333
No 257
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.54 E-value=74 Score=29.76 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHHHhhccCCCC-Cccc--eeccCCCCCCCceeeCCCCCccccee-eeec
Q 046837 607 QALNNYLQKIHPGK-HCNR--LILAGVNGAIPGTVQCADCGRDMEMF-FMYH 654 (658)
Q Consensus 607 ~Af~~y~~~~~~~~-~C~~--~~~p~~~g~ip~~i~CpeC~R~ME~~-v~Y~ 654 (658)
.||+-+|+...... .|.. +.+ -.+|....|++||...+.. ..|.
T Consensus 42 e~L~faf~~~~~~T~~~ega~L~I----e~vp~~~~C~~Cg~~~~~~~~~~~ 89 (117)
T PRK00564 42 SLFVSAFETFREESLVCKDAILDI----VDEKVELECKDCSHVFKPNALDYG 89 (117)
T ss_pred HHHHHHHHHHhcCCcccCCCEEEE----EecCCEEEhhhCCCccccCCccCC
Confidence 34555555543322 3444 333 2578889999999887775 4554
No 258
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=21.49 E-value=1.3e+02 Score=28.45 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCchHH---HHHHHHHHHHHhhcCCceeEEEeeccChhhHH
Q 046837 484 EERFICLYGGNDEAWI---RKFRNSAKDVASKAQINWGMAYVGKKNAKKRL 531 (658)
Q Consensus 484 egK~I~LYgg~d~~Wi---r~FT~~~~~i~~~~~~~~E~v~Vgkdn~~e~v 531 (658)
..++-.|.++. .|| +.+.+.+.++++.. -.+++-++..|...+..
T Consensus 40 ~~~~~ilvi~e--~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~ 87 (129)
T PF14595_consen 40 QKPYNILVITE--TWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELM 87 (129)
T ss_dssp -S-EEEEEE----TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHT
T ss_pred CCCcEEEEEEC--CCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHH
Confidence 34444444455 588 99999999998874 37888888888555444
No 259
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.42 E-value=43 Score=22.96 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=5.5
Q ss_pred CCCCCccccee
Q 046837 640 CADCGRDMEMF 650 (658)
Q Consensus 640 CpeC~R~ME~~ 650 (658)
||+||+..+.-
T Consensus 2 Cp~CG~~~~~~ 12 (23)
T PF13240_consen 2 CPNCGAEIEDD 12 (23)
T ss_pred CcccCCCCCCc
Confidence 55555555443
No 260
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=21.18 E-value=1.9e+02 Score=28.24 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccChh
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKNAK 528 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn~~ 528 (658)
++|-|.+-||+++ ..|+...+.+.+++++.+....++-|.-|.-.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~ 67 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP 67 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH
Confidence 6889999999953 44599999999999886666777888777433
No 261
>PF09665 RE_Alw26IDE: Type II restriction endonuclease (RE_Alw26IDE); InterPro: IPR014328 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family [], whose recognition sequences are 5'-GTCTC-3' (Alw26I), 5'-GGTCTC-3' (Eco31I) and 5'-CGTCTC-3' (Esp3I).
Probab=21.00 E-value=31 Score=39.57 Aligned_cols=62 Identities=26% Similarity=0.567 Sum_probs=39.2
Q ss_pred ceeccccchHHHHHHhhcc-chhhhhhccHHHHHHHHhhc----cCCCCCccceeccCCCCCCCceeeCCCCCcccceee
Q 046837 577 ETARAKGTAAIDCMEKFHE-WQDDALRNGFIQALNNYLQK----IHPGKHCNRLILAGVNGAIPGTVQCADCGRDMEMFF 651 (658)
Q Consensus 577 ~~~~g~G~~~~~~l~~f~~-Wk~~v~~kGF~~Af~~y~~~----~~~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~v 651 (658)
+...+++.-+..|-.+=-. |+.++.+.|++..=+..|-+ +|+. ..-+|--|||.|.+..
T Consensus 33 ~a~s~~~~gF~~t~q~R~~Ww~~Ka~elGip~~~~~~~s~~ar~IHPT----------------~~kpCk~CG~~m~i~Y 96 (511)
T PF09665_consen 33 EAPSNRTSGFYDTYQKRRAWWEKKADELGIPPSENGWISKAARLIHPT----------------KQKPCKTCGKIMSIYY 96 (511)
T ss_pred EecCCCCCcchHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhCCC----------------CCcchHhcCCeeeeee
Confidence 6666666666666544444 78899989997333333332 2331 1235777999999998
Q ss_pred eec
Q 046837 652 MYH 654 (658)
Q Consensus 652 ~Y~ 654 (658)
+|-
T Consensus 97 ~Yp 99 (511)
T PF09665_consen 97 SYP 99 (511)
T ss_pred ecC
Confidence 883
No 262
>PF14149 YhfH: YhfH-like protein
Probab=20.89 E-value=20 Score=27.59 Aligned_cols=13 Identities=31% Similarity=1.015 Sum_probs=10.5
Q ss_pred eeCCCCCccccee
Q 046837 638 VQCADCGRDMEMF 650 (658)
Q Consensus 638 i~CpeC~R~ME~~ 650 (658)
-.|++||..||--
T Consensus 14 K~C~~CG~~i~EQ 26 (37)
T PF14149_consen 14 KKCTECGKEIEEQ 26 (37)
T ss_pred cccHHHHHHHHHH
Confidence 3799999999754
No 263
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=20.75 E-value=56 Score=26.95 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=12.6
Q ss_pred CCCceeeCCCCCccccee
Q 046837 633 AIPGTVQCADCGRDMEMF 650 (658)
Q Consensus 633 ~ip~~i~CpeC~R~ME~~ 650 (658)
..|..+.||+||.++---
T Consensus 22 ~~p~l~~C~~cG~~~~~H 39 (55)
T TIGR01031 22 TAPTLVVCPNCGEFKLPH 39 (55)
T ss_pred cCCcceECCCCCCcccCe
Confidence 357778888888765433
No 264
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=20.68 E-value=33 Score=28.71 Aligned_cols=14 Identities=43% Similarity=0.862 Sum_probs=8.1
Q ss_pred ceeeCCCCCcccce
Q 046837 636 GTVQCADCGRDMEM 649 (658)
Q Consensus 636 ~~i~CpeC~R~ME~ 649 (658)
.++.||.||++-+.
T Consensus 1 m~v~CP~C~k~~~~ 14 (57)
T PF03884_consen 1 MTVKCPICGKPVEW 14 (57)
T ss_dssp -EEE-TTT--EEE-
T ss_pred CcccCCCCCCeecc
Confidence 37899999999887
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.61 E-value=1.3e+02 Score=32.86 Aligned_cols=43 Identities=9% Similarity=-0.038 Sum_probs=36.0
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcCCceeEEEeeccC
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQINWGMAYVGKKN 526 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~~~~E~v~Vgkdn 526 (658)
--+-|.+||++.+ .-|+++|+.+.+++.+.+..|..+.|-.|.
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~ 85 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA 85 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc
Confidence 4457999999942 445999999999999889999999998883
No 266
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=20.57 E-value=1.9e+02 Score=28.13 Aligned_cols=46 Identities=7% Similarity=-0.163 Sum_probs=34.7
Q ss_pred CCcEEEEEccCCc-hHHHHHHHHHHHHHhhcC-CceeEEEeeccChhh
Q 046837 484 EERFICLYGGNDE-AWIRKFRNSAKDVASKAQ-INWGMAYVGKKNAKK 529 (658)
Q Consensus 484 egK~I~LYgg~d~-~Wir~FT~~~~~i~~~~~-~~~E~v~Vgkdn~~e 529 (658)
.++.+.++|.+.+ ..|+++.+.+.+++++.+ .++.++.|.-|+-.+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH
Confidence 4678999999942 446999999999987643 468888888775443
Done!