BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046838
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OQ2|A Chain A, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|B Chain B, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|C Chain C, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|D Chain D, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
Length = 261
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 34 DVLRKLNEKAYEPELLAIGPYHHGKDNLSAFEEHKISYLQTLIEQTGIPYPDYVRAMWAL 93
D+L KL+EK Y PELL I HH L+ E + Y Q + + PD +
Sbjct: 59 DMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES---- 114
Query: 94 EERARNCYGGFI 105
E + YG F+
Sbjct: 115 EADFASKYGDFL 126
>pdb|3NZT|A Chain A, 2.0 Angstrom Crystal Structure Of Glutamate--Cysteine
Ligase (Gsha) Ftom Francisella Tularensis In Complex
With Amp
Length = 525
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 21 TPTCSQFSIFRVPDVLRKLNEKAYEPELLA------IGPYHHGKDNLSAFEEHKISYLQT 74
+P C++ S+ PD L L++K Y E +G + +L+ ++ +Y++
Sbjct: 207 SPICAKTSVKNKPDYLSVLDDKFYVGEYATSLRMSDLGYTSPAQKDLAISYDNVKAYVKD 266
Query: 75 LIEQTGIPYPDYVR 88
LI+ T + DY R
Sbjct: 267 LIQATDDTFADYKR 280
>pdb|3OO8|A Chain A, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
Length = 415
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 210 RVN--DYPINEIKHLV-------NLIHDNWLPSPSRIDAYGNNGKNNSDWSIICSATEIQ 260
R+N DY I +KH V + D W + AY G N W A E +
Sbjct: 200 RINGYDYHIKLMKHEVPWTDPGVTKVFDQW----RELAAYQQKGANGRTWQDAAKALENK 255
Query: 261 KAGIKFQKVD----NHRDGSLFDIKF 282
+AG+ FQ + N+ +L D+ F
Sbjct: 256 QAGMMFQGSNQVAANYSAKNLPDLDF 281
>pdb|3OO7|A Chain A, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
Length = 415
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 210 RVN--DYPINEIKHLV-------NLIHDNWLPSPSRIDAYGNNGKNNSDWSIICSATEIQ 260
R+N DY I +KH V + D W + AY G N W A E +
Sbjct: 200 RINGYDYHIKLMKHEVPWTDPGVTKVFDQW----RELAAYQQKGANGRTWQDAAKALENK 255
Query: 261 KAGIKFQKVD----NHRDGSLFDIKF 282
+AG+ FQ + N+ +L D+ F
Sbjct: 256 QAGMMFQGSNQVAANYSAKNLPDLDF 281
>pdb|3OO6|A Chain A, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
pdb|3OO6|B Chain B, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
Length = 415
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 210 RVN--DYPINEIKHLV-------NLIHDNWLPSPSRIDAYGNNGKNNSDWSIICSATEIQ 260
R+N DY I +KH V + D W + AY G N W A E +
Sbjct: 200 RINGYDYHIKLMKHEVPWTDPGVTKVFDQW----RELAAYQQKGANGRTWQDAAKALENK 255
Query: 261 KAGIKFQKVD----NHRDGSLFDIKF 282
+AG+ FQ + N+ +L D+ F
Sbjct: 256 QAGMMFQGSNQVAANYSAKNLPDLDF 281
>pdb|3OOA|A Chain A, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
pdb|3OOA|B Chain B, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
Length = 415
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 210 RVN--DYPINEIKHLV-------NLIHDNWLPSPSRIDAYGNNGKNNSDWSIICSATEIQ 260
R+N DY I +KH V + D W + AY G N W A E +
Sbjct: 200 RINGYDYHIKLMKHEVPWTDPGVTKVFDQW----RELAAYQQKGANGRTWQDAAKALENK 255
Query: 261 KAGIKFQKVD----NHRDGSLFDIKF 282
+AG+ FQ + N+ +L D+ F
Sbjct: 256 QAGMMFQGSNQVAANYSAKNLPDLDF 281
>pdb|3OO9|A Chain A, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
pdb|3OO9|B Chain B, Crystal Structures And Biochemical Characterization Of The
Bacterial Solute Receptor Acbh Reveal An Unprecedented
Exclusive Substrate Preference For B-D-Galactopyranose
Length = 415
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 210 RVN--DYPINEIKHLV-------NLIHDNWLPSPSRIDAYGNNGKNNSDWSIICSATEIQ 260
R+N DY I +KH V + D W + AY G N W A E +
Sbjct: 200 RINGYDYHIKLMKHEVPWTDPGVTKVFDQW----RELAAYQQKGANGRTWQDAAKALENK 255
Query: 261 KAGIKFQKVD----NHRDGSLFDIKF 282
+AG+ FQ + N+ +L D+ F
Sbjct: 256 QAGMMFQGSNQVAANYSAKNLPDLDF 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,635,247
Number of Sequences: 62578
Number of extensions: 527577
Number of successful extensions: 1017
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 9
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)