BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046838
(349 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 175/337 (51%), Gaps = 33/337 (9%)
Query: 29 IFRVPDVLRKLNEKAYEPELLAIGPYHHGKDNLSAFEEHKISYLQTLIEQT---GIPYPD 85
IFRVP+ LN KAY+P++++IGPYH+G+ +L ++HK LQ +++ +
Sbjct: 48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENV 107
Query: 86 YVRAMWALEERARNCYGGFISLGKNEFVQMMLFDGCFIVEVIRKFGLPHLRGDDDPIFKQ 145
V+A+ LE++ R Y + G ++ + MM+ DGCFI+ V ++ +DPIF
Sbjct: 108 LVKAVVDLEDKIRKSYSEELKTG-HDLMFMMVLDGCFILMVFLIMS-GNIELSEDPIFSI 165
Query: 146 GWMLPHIARDMILLENQLPFFVLWKLFIMSEMPNIPGNESFLVTI-LRFIYGILPGKGFR 204
W+L I D++LLENQ+PFFVL L++ S++ G S L I F + +G
Sbjct: 166 PWLLSSIQSDLLLLENQVPFFVLQTLYVGSKI----GVSSDLNRIAFHFFKNPIDKEG-- 219
Query: 205 RDGVERVNDYPINEIKHLVNLIHDNWLPSPSRIDAYGN--------NGKNNSDWSI---- 252
E+ +Y + KHL++LI + +LP+ S D + GK+ + S+
Sbjct: 220 -SYWEKHRNY---KAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKA 275
Query: 253 ---ICSATEIQKAGIKFQKVDNHRDGSLFDIKFKNGVMKIPTLEIGDATETIFQNLIVYE 309
I SA ++ GIKF ++ ++ S+ +++ K ++IP L + F N + +E
Sbjct: 276 VPLILSAKRLRLQGIKF-RLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFE 334
Query: 310 QCSHGINPKHILDYCKFLHCLINSSKDAELLRRRGII 346
Q + + I Y F+ CL+N+ +D LR +I
Sbjct: 335 QF-YTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLI 370
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 28 SIFRVPDVLRKLNEKAYEPELLAIGPYHHGKDNLSAFEEHKISYLQTLIEQ-TGIPYPDY 86
SIF VP L + +Y P ++IGPYH K L E +K+ + + Q + D
Sbjct: 44 SIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDL 103
Query: 87 VRAMWALEERARNCYGGFISLGKNEFVQMMLFDGCFIVEVIRKFGLPHLRGDDDPIFKQG 146
V + ++E + R CY +I + +M D F++E ++ + R + I + G
Sbjct: 104 VEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYS---FRKVETLINRVG 160
Query: 147 WMLPHIARDMILLENQLPFFVLWK 170
I RD++++ENQ+P FVL K
Sbjct: 161 H--NEILRDIMMIENQIPLFVLRK 182
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 253 ICSATEIQKAGIKFQKVDNHRDGSLFDIKFKNGVMKIPTLEIGDATETIFQNLIVYEQCS 312
I S +++ KAG++F K H + S +G +P + + TET+ +NL+ YE +
Sbjct: 345 IPSVSDLHKAGVRF-KPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYE-AT 402
Query: 313 HGINPKHILDYCKFLHCLINSSKDAELLRRRGII 346
+ P Y + ++ +I+S +D LLR +G++
Sbjct: 403 NTSGPLVFTRYTELINGIIDSEEDVRLLREQGVL 436
>sp|P26767|SP2G_BACTK Putative sporulation sigma factor-processing peptidase (Fragment)
OS=Bacillus thuringiensis subsp. kurstaki PE=3 SV=1
Length = 161
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 140 DPIFKQGWMLPHIARDMILLENQLPFFVLWKLFIMSEMPNIPGNESFLVTILRFIYGILP 199
DP+ K M+ H++ LE+ LP ++ +++ +E+P IP N+S T LR I
Sbjct: 45 DPLTKTPVMIMHVSS----LEHCLPSWLTEQIYSKTEIPQIPENDSGWATKLRLI----- 95
Query: 200 GKGFRRDGVE 209
FR GVE
Sbjct: 96 --PFRAVGVE 103
>sp|Q39152|FACR1_ARATH Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2
SV=1
Length = 491
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 6 PNKVLDLVGEKLHRLTPTCSQ-FSIFRVPD---VLRKLNEKAYEPELLAIGPYHHGKDNL 61
P + ++ EK+ RL P + + + R PD +++L + E +L + + G+DNL
Sbjct: 20 PGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSEVMEIDLFKVLRNNLGEDNL 79
Query: 62 SAFEEHKISYL--QTLIEQTGIPYPDYVRAMWA 92
+A KI + I+ G+ D ++ MW+
Sbjct: 80 NALMREKIVPVPGDISIDNLGLKDTDLIQRMWS 112
>sp|Q58295|DPOL_METJA DNA polymerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pol PE=3
SV=2
Length = 1634
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 17/171 (9%)
Query: 82 PYPDYVRAMWALEERARNCYGGFISLGKNEFVQMMLFDGCFIVEVIRKFGLPHLRGDDDP 141
Y + A+ L+E+ G F++ G+ ++ G + E+ LP + +
Sbjct: 1145 AYSGKINALLKLDEKLAKFLGFFVTRGR---LKKQKLKGETVYEISVYKSLPEYQKEIAE 1201
Query: 142 IFKQGWMLPHIARDMILLENQLPFFVLWKLFIM--SEMPNIPGNESFLVT---ILRFIYG 196
FK+ + + +D + ++N++ + VL +F + +IP E FL + I F+ G
Sbjct: 1202 TFKEVFGAGSMVKDKVTMDNKIVYLVLKYIFKCGDKDKKHIP-EELFLASESVIKSFLDG 1260
Query: 197 ILPGKGFRRDGVERV---NDYPINEIKHLVNLIHDNWLPSPSRIDAYGNNG 244
L K G ++ +N++ L NL+ P+R N G
Sbjct: 1261 FLKAKKNSHKGTSTFMAKDEKYLNQLMILFNLV-----GIPTRFTPVKNKG 1306
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 47 ELLAIGPYHHGKDNLSAFEEHKISYLQTLIEQTGIPYPDYVRAMWALEERARNCYGGFIS 106
ELL GP G ++ F + S + + + + Y DY R + L E RN F+S
Sbjct: 1210 ELLCGGPPCQGFSGMNRFNSREYSKFKNSLISSYLSYCDYYRPRFFLLENVRN----FVS 1265
Query: 107 LGKNEFVQMML-------FDGCFIVEVIRKFGLPHLR 136
KN +++ L + F + ++G+P R
Sbjct: 1266 YKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVPQTR 1302
>sp|P18408|MET16_YEAST Phosphoadenosine phosphosulfate reductase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MET16 PE=1
SV=2
Length = 261
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 34 DVLRKLNEKAYEPELLAIGPYHHGKDNLSAFEEHKISYLQTLIEQTGIPYPDYVRAMWAL 93
D+L KL+EK Y PELL I HH L+ E + Y Q + + PD +
Sbjct: 59 DMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES---- 114
Query: 94 EERARNCYGGFI 105
E + YG F+
Sbjct: 115 EADFASKYGDFL 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,864,902
Number of Sequences: 539616
Number of extensions: 6557851
Number of successful extensions: 12181
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12170
Number of HSP's gapped (non-prelim): 9
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)