Query 046838
Match_columns 349
No_of_seqs 130 out of 669
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kru_A Light-independent proto 17.9 34 0.0012 24.1 0.6 13 161-173 15-27 (63)
2 2l27_B Peptide agonist; CRF, E 17.7 24 0.0008 22.2 -0.3 21 290-311 1-21 (38)
3 2rmf_A Urocortin, HUCN1; CRF l 15.0 19 0.00065 22.9 -1.2 20 290-310 3-22 (40)
4 3drx_A BTB/POZ domain-containi 12.2 1.6E+02 0.0054 25.5 3.5 53 7-59 100-164 (202)
5 2l09_A ASR4154 protein; proto- 11.3 35 0.0012 24.0 -0.9 13 161-173 14-26 (62)
6 1ceu_A Protein (HIV-1 regulato 11.0 1.3E+02 0.0045 20.2 1.9 18 2-19 11-28 (51)
7 1v54_I STA, cytochrome C oxida 9.5 2E+02 0.007 20.7 2.7 31 318-349 42-72 (73)
8 1u9l_A Transcription elongatio 7.8 3E+02 0.01 19.4 3.0 23 324-346 6-28 (70)
9 2yj3_A Copper-transporting ATP 10.0 93 0.0032 27.3 0.0 88 255-345 5-99 (263)
10 1whz_A Hypothetical protein; a 6.9 3.4E+02 0.012 18.5 3.0 21 68-88 49-69 (70)
No 1
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=17.88 E-value=34 Score=24.14 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=9.8
Q ss_pred ccchHHHHHHHHH
Q 046838 161 NQLPFFVLWKLFI 173 (349)
Q Consensus 161 NQIPffVL~~L~~ 173 (349)
++|||||=.++=.
T Consensus 15 kkIP~FVR~kvrr 27 (63)
T 2kru_A 15 GKVPFFVRKKVRK 27 (63)
T ss_dssp TTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 5699999777644
No 2
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=17.65 E-value=24 Score=22.22 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=16.2
Q ss_pred ceEEecccchhhhhhHHHHhhh
Q 046838 290 PTLEIGDATETIFQNLIVYEQC 311 (349)
Q Consensus 290 P~l~id~~T~~llrNLiA~Eq~ 311 (349)
|++.|| -|--+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 677777 588999999876543
No 3
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=15.04 E-value=19 Score=22.91 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=15.5
Q ss_pred ceEEecccchhhhhhHHHHhh
Q 046838 290 PTLEIGDATETIFQNLIVYEQ 310 (349)
Q Consensus 290 P~l~id~~T~~llrNLiA~Eq 310 (349)
|++.|| -|--+||||+-...
T Consensus 3 PpiSiD-LTFHlLR~miemar 22 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELAR 22 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHH
Confidence 677777 58899999986643
No 4
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=12.21 E-value=1.6e+02 Score=25.53 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=25.7
Q ss_pred chHHHHHHHHhhc---cCCCCCCCeeeecCch-------hhhcCcCCc-cceeeeec-ccCCCCC
Q 046838 7 NKVLDLVGEKLHR---LTPTCSQFSIFRVPDV-------LRKLNEKAY-EPELLAIG-PYHHGKD 59 (349)
Q Consensus 7 ~~~~~~i~~~l~~---~~~~~~~~~I~rVP~~-------lr~~~~~aY-~P~~VsIG-PyHhg~~ 59 (349)
.++.+.++++|.. .......-++|||=.. +.....+.+ -.++|+|| .|.+|++
T Consensus 100 ~~Lv~~l~~~i~ere~~~~~~~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~~~~~~~~~~~~~ 164 (202)
T 3drx_A 100 TSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNE 164 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSCCCEEEEEEECSTHHHHHHHTCCTTCEEEEEEEC---------
T ss_pred HHHHHHHHHHHHHHhcccccCCCcceeeeeeCCHHHHHHHHHhhccccChhheEeccccccCCCc
Confidence 3566777777765 1111111258888443 334456666 46899999 8988865
No 5
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=11.31 E-value=35 Score=24.00 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=9.6
Q ss_pred ccchHHHHHHHHH
Q 046838 161 NQLPFFVLWKLFI 173 (349)
Q Consensus 161 NQIPffVL~~L~~ 173 (349)
++|||||=.++=.
T Consensus 14 kkIP~FVR~kvrr 26 (62)
T 2l09_A 14 KNIPFFARSQAKA 26 (62)
T ss_dssp HTSCGGGHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 5699999776544
No 6
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=10.99 E-value=1.3e+02 Score=20.20 Aligned_cols=18 Identities=33% Similarity=0.248 Sum_probs=15.7
Q ss_pred CCCCcchHHHHHHHHhhc
Q 046838 2 AREPPNKVLDLVGEKLHR 19 (349)
Q Consensus 2 ~~~~~~~~~~~i~~~l~~ 19 (349)
.|||.|+|+..+-++|++
T Consensus 11 ~ReP~~eW~le~LeElk~ 28 (51)
T 1ceu_A 11 QREPYNDWTLELLEELKN 28 (51)
T ss_dssp CCCTTSHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHH
Confidence 489999999988888887
No 7
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=9.46 E-value=2e+02 Score=20.68 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=25.3
Q ss_pred cchhhHHHHHHhhcCChHHHHHHHHCCCccCC
Q 046838 318 KHILDYCKFLHCLINSSKDAELLRRRGIIDNC 349 (349)
Q Consensus 318 ~~vtsYv~fM~~LI~t~eDV~lL~~~gIi~n~ 349 (349)
..-..|..|+... |..+|.+..++.||+++.
T Consensus 42 pRK~aYadFYknY-D~~k~ferMk~aG~fqS~ 72 (73)
T 1v54_I 42 KRKKAYADFYRNY-DSMKDFEEMRKAGIFQSA 72 (73)
T ss_dssp HHHHHHHHHHHTC-CHHHHHHHHHHTTCCSSC
T ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHccccccC
Confidence 3456788998885 888999999999998763
No 8
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=7.83 E-value=3e+02 Score=19.36 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHhhcCChHHHHHHHHCCCc
Q 046838 324 CKFLHCLINSSKDAELLRRRGII 346 (349)
Q Consensus 324 v~fM~~LI~t~eDV~lL~~~gIi 346 (349)
-.||..|=-++.|++.|.+.|+-
T Consensus 6 ~~f~~~lgI~e~~a~~L~~~Gf~ 28 (70)
T 1u9l_A 6 DTFTKYLDIDEDFATVLVEEGFS 28 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCHHHHHHHHHcCcC
Confidence 36888888889999999999973
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=9.99 E-value=93 Score=27.27 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=47.7
Q ss_pred CHHHHHhcCcEEEeecCCCC----CceeeeEEcC-ceeeeceEEeccc--chhhhhhHHHHhhhcCCCCCcchhhHHHHH
Q 046838 255 SATEIQKAGIKFQKVDNHRD----GSLFDIKFKN-GVMKIPTLEIGDA--TETIFQNLIVYEQCSHGINPKHILDYCKFL 327 (349)
Q Consensus 255 sAteL~~aGVkfk~~~~~~~----~~llDI~F~~-G~L~IP~l~id~~--T~~llrNLiA~Eq~~~~~~~~~vtsYv~fM 327 (349)
+...+...||-+|. ... ..+--|-|++ |||.-....+.+. .+.+++=+.++|+...+.-...+..|+.=.
T Consensus 5 a~~~~~~~gil~k~---~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~~~~~~l~~~~~~e~~s~hp~a~ai~~~~~~~ 81 (263)
T 2yj3_A 5 LYEKMLHKGMIIKN---SNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLSLAYAASVEALSSHPIAKAIVKYAKEQ 81 (263)
Confidence 44566778998876 322 2344577886 9887766666543 456677777788743321102333333211
Q ss_pred HhhcCChHHHHHHHHCCC
Q 046838 328 HCLINSSKDAELLRRRGI 345 (349)
Q Consensus 328 ~~LI~t~eDV~lL~~~gI 345 (349)
+.=..+.++++.+...|+
T Consensus 82 g~~~~~~~~~~~~~G~g~ 99 (263)
T 2yj3_A 82 GVKILEVKDFKEISGIGV 99 (263)
Confidence 111224455655555554
No 10
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=6.93 E-value=3.4e+02 Score=18.51 Aligned_cols=21 Identities=5% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHH
Q 046838 68 KISYLQTLIEQTGIPYPDYVR 88 (349)
Q Consensus 68 K~~~~~~~l~r~~~~~~~~~~ 88 (349)
|.-.++.++++.|.+.++|.+
T Consensus 49 ~~g~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 49 PKGTFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHhh
Confidence 567888999999988888753
Done!