Query 046838
Match_columns 349
No_of_seqs 130 out of 669
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 08:13:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i4ra1 c.149.1.1 (A:4-79) V-t 36.4 9.3 0.00068 26.1 2.4 44 5-52 26-76 (76)
2 d1eg3a2 a.39.1.7 (A:210-306) D 33.6 15 0.0011 26.4 3.2 53 66-118 3-78 (97)
3 d1eeja2 d.17.3.1 (A:1-60) Disu 15.5 86 0.0063 19.9 4.0 32 258-289 8-39 (60)
4 d1v8ca2 d.129.5.1 (A:88-165) M 9.7 54 0.0039 21.5 1.3 12 285-296 49-60 (78)
5 d2outa1 a.140.3.2 (A:94-131) U 8.5 47 0.0034 18.7 0.6 12 257-268 6-17 (38)
6 d1t3ba2 d.17.3.1 (A:2-60) Disu 7.7 1.1E+02 0.0077 19.4 2.2 32 258-289 7-38 (59)
7 d1oy5a_ c.116.1.4 (A:) tRNA(m1 6.7 81 0.0059 25.9 1.5 29 93-121 117-150 (232)
8 d1ctda_ a.39.1.5 (A:) Troponin 6.6 1.8E+02 0.013 16.1 2.4 24 94-117 3-31 (34)
9 d1alva_ a.39.1.8 (A:) Calpain 5.9 2.4E+02 0.018 20.4 4.0 23 95-117 116-139 (173)
10 d3erja1 c.131.1.1 (A:2-117) Hy 5.5 1.8E+02 0.013 20.7 2.8 12 45-56 89-100 (116)
No 1
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=36.37 E-value=9.3 Score=26.15 Aligned_cols=44 Identities=23% Similarity=0.514 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHhhc-------cCCCCCCCeeeecCchhhhcCcCCccceeeeec
Q 046838 5 PPNKVLDLVGEKLHR-------LTPTCSQFSIFRVPDVLRKLNEKAYEPELLAIG 52 (349)
Q Consensus 5 ~~~~~~~~i~~~l~~-------~~~~~~~~~I~rVP~~lr~~~~~aY~P~~VsIG 52 (349)
.+++..+.+++-++. .++. ..-++|+.+++.-.+.-.|.++.||
T Consensus 26 ~~ee~~~~i~~~~~~~digII~Ite~----~a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 26 SDEEIVKAVEDVLKRDDVGVVIMKQE----YLKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp SHHHHHHHHHHHHHCSSEEEEEEEGG----GSTTSCHHHHTTTTTCCSSEEEEEC
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEeHH----HHHHhhHHHHHHHhcCCCCEEEecC
Confidence 345677777776665 2233 2567799999888888999999998
No 2
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.65 E-value=15 Score=26.40 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcC-C----CHHHHHHHHH---------------HHHHHHhcccc---CCcCCChHHHHHHHHh
Q 046838 66 EHKISYLQTLIEQTG-I----PYPDYVRAMW---------------ALEERARNCYG---GFISLGKNEFVQMMLF 118 (349)
Q Consensus 66 ~~K~~~~~~~l~r~~-~----~~~~~~~~i~---------------~~e~~aR~cY~---~~~~~~~~ef~~Mmll 118 (349)
+-|.||+-+.+..++ . .++.++..+. .+|..+|+|+. +.-+++.++|+..|..
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~~ 78 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRL 78 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHHh
Confidence 358889888887653 2 2444443332 24778888884 2334777777766653
No 3
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.54 E-value=86 Score=19.90 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHhcCcEEEeecCCCCCceeeeEEcCceeee
Q 046838 258 EIQKAGIKFQKVDNHRDGSLFDIKFKNGVMKI 289 (349)
Q Consensus 258 eL~~aGVkfk~~~~~~~~~llDI~F~~G~L~I 289 (349)
.|.+.|+++.....+.-.++..|..++|++.+
T Consensus 8 ~L~~~~~~v~sV~~spi~GlyeV~~~~~i~Yv 39 (60)
T d1eeja2 8 TLAKMGIKSSDIQPAPVAGMKTVLTNSGVLYI 39 (60)
T ss_dssp HHHHTTCCEEEEEECSSTTEEEEEETTEEEEE
T ss_pred HHHhcCCceeEEecCCCCCeEEEEECCEEEEE
Confidence 56777988876544666889999998885543
No 4
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.72 E-value=54 Score=21.52 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.2
Q ss_pred ceeeeceEEecc
Q 046838 285 GVMKIPTLEIGD 296 (349)
Q Consensus 285 G~L~IP~l~id~ 296 (349)
|.|+||+|.+.-
T Consensus 49 gsl~ip~lrvev 60 (78)
T d1v8ca2 49 GSLSIPQLRVEV 60 (78)
T ss_dssp TTEEEEEEEEEE
T ss_pred cceecceEEEEe
Confidence 889999998864
No 5
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=8.52 E-value=47 Score=18.68 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=10.4
Q ss_pred HHHHhcCcEEEe
Q 046838 257 TEIQKAGIKFQK 268 (349)
Q Consensus 257 teL~~aGVkfk~ 268 (349)
.+|-+.||.||.
T Consensus 6 aqltergitfkq 17 (38)
T d2outa1 6 AQLTERGITFKQ 17 (38)
T ss_dssp HHHHHHTCCCSS
T ss_pred HHHHHcCceeec
Confidence 478899999988
No 6
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=7.67 E-value=1.1e+02 Score=19.39 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=22.1
Q ss_pred HHHhcCcEEEeecCCCCCceeeeEEcCceeee
Q 046838 258 EIQKAGIKFQKVDNHRDGSLFDIKFKNGVMKI 289 (349)
Q Consensus 258 eL~~aGVkfk~~~~~~~~~llDI~F~~G~L~I 289 (349)
+|+..|+++.....++-.++..|...+|++.+
T Consensus 7 kl~~l~~~v~~i~~spi~GlyeV~~~~gi~Yv 38 (59)
T d1t3ba2 7 KLQSFNISNIVIKSSPISGIKTAVTDQGILYV 38 (59)
T ss_dssp HHHTTTCCSCCCCBCSSTTEECCEETTEECEE
T ss_pred HHHHcCCeeeEEecCCCCCeEEEEECCEEEEE
Confidence 56667887766444556788899888875543
No 7
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=6.73 E-value=81 Score=25.88 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=22.0
Q ss_pred HHHHHhccccCCcC-----CChHHHHHHHHhhHH
Q 046838 93 LEERARNCYGGFIS-----LGKNEFVQMMLFDGC 121 (349)
Q Consensus 93 ~e~~aR~cY~~~~~-----~~~~ef~~MmllDgc 121 (349)
..+++..++++.+. ++.-|++-|+++|++
T Consensus 117 iDeRv~~~~d~EiSiGDyVLsGGElaA~v~iDai 150 (232)
T d1oy5a_ 117 VDERVKKIVDMEISLGDFILSGGEIVALAVIDAV 150 (232)
T ss_dssp BCGGGGGGCCEECCBCSSCCSBSHHHHHHHHHHH
T ss_pred HhhHhhcCCceEEEeccEEEeCCcchhhhHHHHH
Confidence 34566776665443 788999999999998
No 8
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.55 E-value=1.8e+02 Score=16.10 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=14.7
Q ss_pred HHHHhcccc---CCc--CCChHHHHHHHH
Q 046838 94 EERARNCYG---GFI--SLGKNEFVQMML 117 (349)
Q Consensus 94 e~~aR~cY~---~~~--~~~~~ef~~Mml 117 (349)
|++.-.|+. ..- -++.+||.+|+-
T Consensus 3 EeELae~FRifDkNaDGyiD~eEl~~ilr 31 (34)
T d1ctda_ 3 EEELANAFRIFDKNADGYIDIEELGEILR 31 (34)
T ss_dssp HHHHHHHHHTTCCSSSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccccHHHHHHHHH
Confidence 445555552 222 288899988874
No 9
>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.89 E-value=2.4e+02 Score=20.43 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=14.5
Q ss_pred HHHhcccc-CCcCCChHHHHHHHH
Q 046838 95 ERARNCYG-GFISLGKNEFVQMML 117 (349)
Q Consensus 95 ~~aR~cY~-~~~~~~~~ef~~Mml 117 (349)
+.....+. ++-.++-+||+.+|.
T Consensus 116 ~~~~~~d~d~~G~i~~~EF~~~~~ 139 (173)
T d1alva_ 116 SMIIRRYSDEGGNMDFDNFISCLV 139 (173)
T ss_dssp HHHHHHHTCSSSCBCHHHHHHHHH
T ss_pred HHhhccccCCCCeEeHHHHHHHHH
Confidence 34444554 334488899998874
No 10
>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.54 E-value=1.8e+02 Score=20.75 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=9.8
Q ss_pred cceeeeecccCC
Q 046838 45 EPELLAIGPYHH 56 (349)
Q Consensus 45 ~P~~VsIGPyHh 56 (349)
++.+++|||+-.
T Consensus 89 t~TvlaigP~~~ 100 (116)
T d3erja1 89 TITAVVIGPDEE 100 (116)
T ss_dssp CCCEEEEEEEEH
T ss_pred CeEEEEECCCCH
Confidence 677999999864
Done!