BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046844
(967 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 177/707 (25%), Positives = 277/707 (39%), Gaps = 112/707 (15%)
Query: 257 NQLLQGSLPNFPKNSSLRDLILSHTGLSG--TLPDSIGNLENLTRVEVSS--CNFTGPIP 312
N + GS+ F ++SL L LS LSG T S+G+ L + VSS +F G +
Sbjct: 83 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 142
Query: 313 PSMANLTQLFHMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIV 372
+ L L +D S+N G G + S +L +L I
Sbjct: 143 GGLK-LNSLEVLDLSANSISG------------------ANVVGWVLSDGCGELKHLAI- 182
Query: 373 VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPV 432
N +SG + S + NLE L +S+N F +P + GN+L G
Sbjct: 183 --SGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDIS--GNKLSGDF 236
Query: 433 --PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
IS EL+ L++SSN+F IP L +S L L +++N+ +GE+P
Sbjct: 237 SRAISTCTELK---LLNISSNQFVG---------PIPPLPLKS-LQYLSLAENKFTGEIP 283
Query: 491 NWIWEVGSGNLKFLNLSHNLVVSLQEPY---------------------------SISGI 523
+++ L L+LS N P+ + G+
Sbjct: 284 DFL-SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 524 RFLDLHSNQLRGNIPYMSPNTSY----VDYSNNNFTS--IPADIGNFMSETEYFYFVAAN 577
+ LDL N+ G +P N S +D S+NNF+ +P N + + Y N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL--QN 400
Query: 578 NSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
N G IP ++ + L LS N LSGTIP+ L + S ++ +
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQEL 459
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
++ ILD N L G +P L+NC L + L +N ++ P W+ +L +L
Sbjct: 460 MYVKTLETLILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT--MMVAETKSGSEVNHL 755
L +N+FSG+I P L +DL N F+G + + A +G ++
Sbjct: 518 LSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALN 815
+ + + + +GI + L + + +S + G S+ L+
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 816 MSHNAL------------------------TGSIPSSFGNLKEIESLDLSMNNLSGKIPA 851
MS+N L +GSIP G+L+ + LDLS N L G+IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 852 QXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 898
G IP Q ++F P + N GL G PL
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 237/591 (40%), Gaps = 88/591 (14%)
Query: 160 LSASGTEWCKALSFLPN---LQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGT 216
L S + + FL + LQ L +SG LSG + ++ L ++ + N
Sbjct: 202 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN------- 254
Query: 217 EFLA-----HLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLSINQLLQGSLPNFPKN 270
+F+ L +L+ L L+E G+ P+ + TL LDLS N P F
Sbjct: 255 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 271 SSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSCNFTGPIPPSMANLT-QLFHMDFSS 328
S L L LS SG LP D++ + L +++S F+G +P S+ NL+ L +D SS
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 329 NHFFGPI-PSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSL 387
N+F GPI P+L + LQ + L +N +G IP +L
Sbjct: 375 NNFSGPILPNLCQNPKNT-----------------------LQELYLQNNGFTGKIPPTL 411
Query: 388 FLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLD 447
L L LS N +P N LEG +P + + ++ L TL
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-NMLEGEIPQELMY-VKTLETLI 469
Query: 448 LSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
L N L P L N + L+ + +S+N+++GE+P WI + NL L LS
Sbjct: 470 LDFN-----DLTGEIPSG---LSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLS 519
Query: 508 HNLVVSLQEPYSISGIR---FLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNF 564
+N S P + R +LDL++N G IP F NF
Sbjct: 520 NN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM------------FKQSGKIAANF 566
Query: 565 MSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXX 624
++ Y Y N+ + FQ + N T C IT
Sbjct: 567 IAGKRYVYI--KNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-------- 615
Query: 625 XXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
+ F + + LD+S N L G +PK + + L +L+L N IS + P
Sbjct: 616 -----VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 685 CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ 735
+ + L +L L SN G I P+ + +L +DL+ N SG + +
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 25/243 (10%)
Query: 104 FAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSAS 163
F+GE+P + L + G+ ++ S+ + L L NL+ + L LD + S
Sbjct: 327 FSGELPMD-------TLLKMRGLKVLDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNFS 378
Query: 164 GTEWCKALSFLPNL--------QVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSG 215
G LPNL Q L L +G I L+ L + L +NY +
Sbjct: 379 GP-------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 216 TEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN-SSLR 274
L L+ L+ L L L+G+ P+++++V TLETL L N L G +P+ N ++L
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLN 490
Query: 275 DLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP 334
+ LS+ L+G +P IG LENL +++S+ +F+G IP + + L +D ++N F G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 335 IPS 337
IP+
Sbjct: 551 IPA 553
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 119/301 (39%), Gaps = 69/301 (22%)
Query: 104 FAGEIPTEISSLTRLVTLDL-----SGIVPIEYSYTVWIANLSL-----------FLQNL 147
+G IP+ + SL++L L L G +P E Y + L L L N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLH 207
T L + L L+ +W + L NL +L LS SG I L RSL I L
Sbjct: 487 TNLNWISLSNNRLTGEIPKW---IGRLENLAILKLSNNSFSGNIPAELGDCRSL--IWLD 541
Query: 208 YNYGLSSGT--------------EFLA--HLTNLKALDLS-ECG-------LQGKFPEKI 243
N L +GT F+A +K + EC QG E++
Sbjct: 542 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 244 LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILS------------------------ 279
+ T +++ + P F N S+ L +S
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 280 HTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLH 339
H +SG++PD +G+L L +++SS G IP +M+ LT L +D S+N+ GPIP +
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 340 K 340
+
Sbjct: 722 Q 722
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 38 DEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRXXXXXXXXXX 97
D G ++ LD+S+ + G + G + YL LNLG G IP
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHNDISG-SIPDEVGDLRGLNIL 682
Query: 98 XXSQGGFAGEIPTEISSLTRLVTLDLS 124
S G IP +S+LT L +DLS
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLS 709
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 177/707 (25%), Positives = 277/707 (39%), Gaps = 112/707 (15%)
Query: 257 NQLLQGSLPNFPKNSSLRDLILSHTGLSG--TLPDSIGNLENLTRVEVSS--CNFTGPIP 312
N + GS+ F ++SL L LS LSG T S+G+ L + VSS +F G +
Sbjct: 86 NSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145
Query: 313 PSMANLTQLFHMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIV 372
+ L L +D S+N G G + S +L +L I
Sbjct: 146 GGLK-LNSLEVLDLSANSISG------------------ANVVGWVLSDGCGELKHLAI- 185
Query: 373 VLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPV 432
N +SG + S + NLE L +S+N F +P + GN+L G
Sbjct: 186 --SGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDIS--GNKLSGDF 239
Query: 433 --PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVP 490
IS EL+ L++SSN+F IP L +S L L +++N+ +GE+P
Sbjct: 240 SRAISTCTELK---LLNISSNQFVG---------PIPPLPLKS-LQYLSLAENKFTGEIP 286
Query: 491 NWIWEVGSGNLKFLNLSHNLVVSLQEPY---------------------------SISGI 523
+++ L L+LS N P+ + G+
Sbjct: 287 DFL-SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 524 RFLDLHSNQLRGNIPYMSPNTSY----VDYSNNNFTS--IPADIGNFMSETEYFYFVAAN 577
+ LDL N+ G +P N S +D S+NNF+ +P N + + Y N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL--QN 403
Query: 578 NSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
N G IP ++ + L LS N LSGTIP+ L + S ++ +
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQEL 462
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
++ ILD N L G +P L+NC L + L +N ++ P W+ +L +L
Sbjct: 463 MYVKTLETLILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT--MMVAETKSGSEVNHL 755
L +N+FSG+I P L +DL N F+G + + A +G ++
Sbjct: 521 LSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 756 GIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALN 815
+ + + + +GI + L + + +S + G S+ L+
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 816 MSHNAL------------------------TGSIPSSFGNLKEIESLDLSMNNLSGKIPA 851
MS+N L +GSIP G+L+ + LDLS N L G+IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 852 QXXXXXXXXXXXXXXXXXVGKIPTSTQLQSFSPTSYEGNKGLYGPPL 898
G IP Q ++F P + N GL G PL
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 237/591 (40%), Gaps = 88/591 (14%)
Query: 160 LSASGTEWCKALSFLPN---LQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGT 216
L S + + FL + LQ L +SG LSG + ++ L ++ + N
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN------- 257
Query: 217 EFLA-----HLTNLKALDLSECGLQGKFPEKIL-HVPTLETLDLSINQLLQGSLPNFPKN 270
+F+ L +L+ L L+E G+ P+ + TL LDLS N P F
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 271 SSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSCNFTGPIPPSMANLT-QLFHMDFSS 328
S L L LS SG LP D++ + L +++S F+G +P S+ NL+ L +D SS
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 329 NHFFGPI-PSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSL 387
N+F GPI P+L + LQ + L +N +G IP +L
Sbjct: 378 NNFSGPILPNLCQNPKNT-----------------------LQELYLQNNGFTGKIPPTL 414
Query: 388 FLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLD 447
L L LS N +P N LEG +P + + ++ L TL
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-NMLEGEIPQELMY-VKTLETLI 472
Query: 448 LSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
L N L P L N + L+ + +S+N+++GE+P WI + NL L LS
Sbjct: 473 LDFN-----DLTGEIPSG---LSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLS 522
Query: 508 HNLVVSLQEPYSISGIR---FLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNF 564
+N S P + R +LDL++N G IP F NF
Sbjct: 523 NN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM------------FKQSGKIAANF 569
Query: 565 MSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXX 624
++ Y Y N+ + FQ + N T C IT
Sbjct: 570 IAGKRYVYI--KNDGMKKEC-HGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-------- 618
Query: 625 XXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP 684
+ F + + LD+S N L G +PK + + L +L+L N IS + P
Sbjct: 619 -----VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 685 CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ 735
+ + L +L L SN G I P+ + +L +DL+ N SG + +
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 25/243 (10%)
Query: 104 FAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSAS 163
F+GE+P + L + G+ ++ S+ + L L NL+ + L LD + S
Sbjct: 330 FSGELPMD-------TLLKMRGLKVLDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNFS 381
Query: 164 GTEWCKALSFLPNL--------QVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSG 215
G LPNL Q L L +G I L+ L + L +NY +
Sbjct: 382 GP-------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 216 TEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN-SSLR 274
L L+ L+ L L L+G+ P+++++V TLETL L N L G +P+ N ++L
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLN 493
Query: 275 DLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP 334
+ LS+ L+G +P IG LENL +++S+ +F+G IP + + L +D ++N F G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 335 IPS 337
IP+
Sbjct: 554 IPA 556
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 119/301 (39%), Gaps = 69/301 (22%)
Query: 104 FAGEIPTEISSLTRLVTLDL-----SGIVPIEYSYTVWIANLSL-----------FLQNL 147
+G IP+ + SL++L L L G +P E Y + L L L N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLH 207
T L + L L+ +W + L NL +L LS SG I L RSL I L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW---IGRLENLAILKLSNNSFSGNIPAELGDCRSL--IWLD 544
Query: 208 YNYGLSSGT--------------EFLA--HLTNLKALDLS-ECG-------LQGKFPEKI 243
N L +GT F+A +K + EC QG E++
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 244 LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILS------------------------ 279
+ T +++ + P F N S+ L +S
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 280 HTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLH 339
H +SG++PD +G+L L +++SS G IP +M+ LT L +D S+N+ GPIP +
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 340 K 340
+
Sbjct: 725 Q 725
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 38 DEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRXXXXXXXXXX 97
D G ++ LD+S+ + G + G + YL LNLG G IP
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIG--SMPYLFILNLGHNDISG-SIPDEVGDLRGLNIL 685
Query: 98 XXSQGGFAGEIPTEISSLTRLVTLDLS 124
S G IP +S+LT L +DLS
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLS 712
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 219 LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLI- 277
+A LT L L ++ + G P+ + + TL TLD S N L G+LP P SSL +L+
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLP--PSISSLPNLVG 153
Query: 278 --LSHTGLSGTLPDSIGNLENL-TRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP 334
+SG +PDS G+ L T + +S TG IPP+ ANL F +D S N
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNML--- 209
Query: 335 IPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLE 394
G +S + N Q + L NSL+ + + + L NL
Sbjct: 210 ---------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN 247
Query: 395 MLQLSNNQFENQLPE 409
L L NN+ LP+
Sbjct: 248 GLDLRNNRIYGTLPQ 262
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 119/286 (41%), Gaps = 50/286 (17%)
Query: 228 LDLSECGLQGKFP--EKILHVPTLETLDLS-INQLLQGSLPNFPKNSSLRDLILSHTGLS 284
LDLS L +P + ++P L L + IN L+ P K + L L ++HT +S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKXXXX 344
G +PD + ++ L ++ S +G +PPS+++L L + F N G IP +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY----- 169
Query: 345 XXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFE 404
G S F + + N L+G IP + L NL + LS N E
Sbjct: 170 -----------GSFSKLFTS-------MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 405 NQLPEIXXXXXXXXXXXXXXGNRLE---GPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461
+ N L G V +S +NL LDL +N ++ +
Sbjct: 211 GD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-----KNLNGLDLRNN-----RIYGT 259
Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLS 507
P+ + LK L L++S N + GE+P GNL+ ++S
Sbjct: 260 LPQGLTQLK---FLHSLNVSFNNLCGEIPQ------GGNLQRFDVS 296
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 118/329 (35%), Gaps = 100/329 (30%)
Query: 571 FYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXX 630
F ++ N+L G IP ++ K T L +++ N+SG IP L S ++
Sbjct: 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-----SQIKT-------- 126
Query: 631 XXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNA 690
L LD S N L G +P S+++ L + N IS P +
Sbjct: 127 --------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 691 SSL-QVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG 749
S L + + N +G I ++ L VDL+ N G S + G
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLF-----------G 218
Query: 750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR 809
S+ N I + N + D ++G +
Sbjct: 219 SDKNTQKIHLAKNSL------------------------AFDLG----------KVGLSK 244
Query: 810 SLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXX 869
+L L++ +N + G++P LK + SL++S NNL
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL------------------------ 280
Query: 870 VGKIPTSTQLQSFSPTSYEGNKGLYGPPL 898
G+IP LQ F ++Y NK L G PL
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 112/303 (36%), Gaps = 82/303 (27%)
Query: 535 GNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNF 594
N+PY+ N Y+ NN IP I +++ Y Y N ++G IP+ + +
Sbjct: 73 ANLPYL--NFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTN--VSGAIPDFLSQIKTL 127
Query: 595 QVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQ 654
LD S N LSGT+P S + P G+ GN+
Sbjct: 128 VTLDFSYNALSGTLPP------------------------SISSLPNLVGIT---FDGNR 160
Query: 655 LQGVVPKSLAN-CNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713
+ G +P S + + + + N ++ P N +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------------------- 198
Query: 714 VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTV 773
L VDL+ N G S ++ K+ ++ HL + +V ++ +
Sbjct: 199 -----LAFVDLSRNMLEGDAS------VLFGSDKNTQKI-HLAKNSLAFDLGKVGLSKNL 246
Query: 774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLK 833
G++++ +N G +P + + + L++LN+S N L G IP GNL+
Sbjct: 247 NGLDLR--------------NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Query: 834 EIE 836
+
Sbjct: 292 RFD 294
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 136/567 (23%), Positives = 213/567 (37%), Gaps = 84/567 (14%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNH----FFGPIPSLH 339
IG+L+ L + V+ +P +NLT L H+D SSN + + LH
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 340 KXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQL 398
+ I +++ + L + L +N S ++ ++ L LE+ +L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 399 SNNQFENQ--LPEIXXXXXXXXXXXXXXGNRLEG-----PVPISIFFELRNLYTLDLSSN 451
+F N+ L + RL I +F L N+ + L S
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 452 KFSRLK------------LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499
R+K L + K P LK +S L L + N+ N EV
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKRLTFTSNKGG----NAFSEVDLP 347
Query: 500 NLKFLNLSHNLV----VSLQEPYSISGIRFLDL-------------------HSNQLRGN 536
+L+FL+LS N + Q + + +++LDL H + N
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 537 IPYMSP--------NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESV 588
+ MS N Y+D S+ + I N +S E +A N+ +P+
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-MAGNSFQENFLPDIF 466
Query: 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDC--GLQ 646
+ N LDLS L P S S+L+V DT FP C LQ
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSL--DT-FPYKCLNSLQ 521
Query: 647 ILDLSGNQLQGV-------VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR 699
+LD S N + P SLA N+ Q D +F W+++ L V V R
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-DFACTCEHQSFLQWIKDQRQLLVEVER 580
Query: 700 SNNFSGHISCPRNKVSWPLLQIVDLAC 726
+ P +K P+L + ++ C
Sbjct: 581 M-----ECATPSDKQGMPVLSL-NITC 601
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Query: 174 LPNLQVLSLS--GCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS 231
LP+L+ L LS G G + + SL + L +N ++ + FL L L+ LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 232 ECGLQGKFPEKI-LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGT-LPD 289
L+ + L + L LD+S F SSL L ++ LPD
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 290 SIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG 333
L NLT +++S C P + +L+ L ++ S N+FF
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 638 IFPGDCGLQILDLSGNQLQ-GVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
IF G L++L ++GN Q +P L LDL + P + SSLQVL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 697 VLRSNNFSGHISCPRNKVSWPLLQIVDLACN 727
+ NNF + P ++ LQ++D + N
Sbjct: 500 NMSHNNFFSLDTFPYKCLNS--LQVLDYSLN 528
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 783 VPNIFTSI------DFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIE 836
+P+IFT + D S E P SL LNMSHN + L ++
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 837 SLDLSMNNL 845
LD S+N++
Sbjct: 522 VLDYSLNHI 530
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 27/129 (20%)
Query: 158 VDLSASGTEWCKALSFL--PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN------ 209
+DLS + + SF P LQVL LS C++ + LS + L N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 210 ----YGLSSGTEFLA--------------HLTNLKALDLSECGLQG-KFPEKILHVPTLE 250
GLSS + +A HL LK L+++ +Q K PE ++ LE
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 251 TLDLSINQL 259
LDLS N++
Sbjct: 153 HLDLSSNKI 161
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 123/522 (23%), Positives = 202/522 (38%), Gaps = 74/522 (14%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNH----FFGPIPSLH 339
IG+L+ L + V+ +P +NLT L H+D SSN + + LH
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 340 KXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQL 398
+ I +++ + L + L +N S ++ ++ L LE+ +L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232
Query: 399 SNNQFENQ--LPEIXXXXXXXXXXXXXXGNRLEG-----PVPISIFFELRNLYTLDLSSN 451
+F N+ L + RL I +F L N+ + L S
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 452 KFSRLK------------LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499
R+K L + K P LK +S L L + N+ N EV
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKRLTFTSNKGG----NAFSEVDLP 347
Query: 500 NLKFLNLSHNLV----VSLQEPYSISGIRFLDLHSNQLRGNIPYMSPN------TSYVDY 549
+L+FL+LS N + Q + + +++LDL N + MS N ++D+
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN----GVITMSSNFLGLEQLEHLDF 403
Query: 550 SNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP 609
++N + +E+ F++ N + LD+S+ +
Sbjct: 404 QHSNLKQM----------SEFSVFLSLRNLI---------------YLDISHTHTRVAFN 438
Query: 610 ACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669
I S+LEV IF L LDLS QL+ + P + + + L
Sbjct: 439 G--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPR 711
QVL++ SN + +SLQ + L +N + SCPR
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD--CSCPR 536
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 174 LPNLQVLSLS--GCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS 231
LP+L+ L LS G G + + SL + L +N ++ + FL L L+ LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 232 ECGLQGKFPEKI-LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGT-LPD 289
L+ + L + L LD+S F SSL L ++ LPD
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 290 SIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNH 330
L NLT +++S C P + +L+ L ++ +SN
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 217 EFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLR 274
+ L NL LDLS+C L+ P + +L+ L+++ NQL S+P+ F + +SL+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL--KSVPDGIFDRLTSLQ 521
Query: 275 DLILSHT 281
+ L HT
Sbjct: 522 KIWL-HT 527
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 27/129 (20%)
Query: 158 VDLSASGTEWCKALSFL--PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN------ 209
+DLS + + SF P LQVL LS C++ + LS + L N
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 210 ----YGLSSGTEFLA--------------HLTNLKALDLSECGLQG-KFPEKILHVPTLE 250
GLSS + +A HL LK L+++ +Q K PE ++ LE
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 251 TLDLSINQL 259
LDLS N++
Sbjct: 153 HLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 136/564 (24%), Positives = 211/564 (37%), Gaps = 87/564 (15%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNH----FFGPIPSLH 339
IG+L+ L + V+ +P +NLT L H+D SSN + + LH
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197
Query: 340 KXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LPNLEMLQL 398
+ I +++ + L + L +N S ++ ++ L LE+ +L
Sbjct: 198 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256
Query: 399 SNNQFENQ--LPEIXXXXXXXXXXXXXXGNR-------LEGPVPISIFFELRNLYTLDLS 449
+F N+ L + R L+G I +F L N+ + L
Sbjct: 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG--IIDLFNCLTNVSSFSLV 314
Query: 450 SNKFSRLK------------LASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVG 497
S R+K L + K P LK +S L L + N+ N EV
Sbjct: 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKRLTFTSNKGG----NAFSEVD 369
Query: 498 SGNLKFLNLSHNLV----VSLQEPYSISGIRFLDL-------------------HSNQLR 534
+L+FL+LS N + Q + +++LDL H +
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429
Query: 535 GNIPYMSP--------NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE 586
N+ MS N Y+D S+ + I N +S E +A N+ +P+
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-MAGNSFQENFLPD 488
Query: 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDC--G 644
+ N LDLS L P S S+L+V DT FP C
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMSHNNFFSL--DT-FPYKCLNS 543
Query: 645 LQILDLSGNQLQGV-------VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
LQ+LD S N + P SLA N+ Q D +F W+++ L V V
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-DFACTCEHQSFLQWIKDQRQLLVEV 602
Query: 698 LRSNNFSGHISCPRNKVSWPLLQI 721
R + P +K P+L +
Sbjct: 603 ERM-----ECATPSDKQGMPVLSL 621
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 5/164 (3%)
Query: 174 LPNLQVLSLS--GCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS 231
LP+L+ L LS G G + + SL + L +N ++ + FL L L+ LD
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 428
Query: 232 ECGLQGKFPEKI-LHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGT-LPD 289
L+ + L + L LD+S F SSL L ++ LPD
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 290 SIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFG 333
L NLT +++S C P + +L+ L ++ S N+FF
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 638 IFPGDCGLQILDLSGNQLQ-GVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
IF G L++L ++GN Q +P L LDL + P + SSLQVL
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 697 VLRSNNFSGHISCPRNKVSWPLLQIVDLACN 727
+ NNF + P ++ LQ++D + N
Sbjct: 524 NMSHNNFFSLDTFPYKCLNS--LQVLDYSLN 552
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 783 VPNIFTSI------DFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIE 836
+P+IFT + D S E P SL LNMSHN + L ++
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 837 SLDLSMNNL 845
LD S+N++
Sbjct: 546 VLDYSLNHI 554
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 27/129 (20%)
Query: 158 VDLSASGTEWCKALSFL--PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN------ 209
+DLS + + SF P LQVL LS C++ + LS + L N
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 210 ----YGLSSGTEFLA--------------HLTNLKALDLSECGLQG-KFPEKILHVPTLE 250
GLSS + +A HL LK L+++ +Q K PE ++ LE
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 251 TLDLSINQL 259
LDLS N++
Sbjct: 177 HLDLSSNKI 185
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 10/151 (6%)
Query: 168 CKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKA 227
C L+ LP L+ D SG + +L +RL + G+ S +A+L NLK+
Sbjct: 160 CPELTELPE----PLASTDASGEHQGLV----NLQSLRLEWT-GIRSLPASIANLQNLKS 210
Query: 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTL 287
L + L P I H+P LE LDL L+ P F + L+ LIL TL
Sbjct: 211 LKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 288 PDSIGNLENLTRVEVSSCNFTGPIPPSMANL 318
P I L L ++++ C +P +A L
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSN 329
IG+L+ L + V+ +P +NLT L H+D SSN
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSN 329
IG+L+ L + V+ +P +NLT L H+D SSN
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 27/129 (20%)
Query: 158 VDLSASGTEWCKALSFL--PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYN------ 209
+DLS + + SF P LQVL LS C++ + LS + L N
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 210 ----YGLSSGTEFLA--------------HLTNLKALDLSECGLQG-KFPEKILHVPTLE 250
GLSS + +A HL LK L+++ +Q K PE ++ LE
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 251 TLDLSINQL 259
LDLS N++
Sbjct: 154 HLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSN 329
IG+L+ L + V+ +P +NLT L H+D SSN
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 119/524 (22%), Positives = 205/524 (39%), Gaps = 90/524 (17%)
Query: 361 TFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXX 420
T + QL +L + G N++S P LP L++L L +N+ +QL +
Sbjct: 56 TRYSQLTSLDV---GFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTE 111
Query: 421 XXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS------------------- 461
N ++ + + F + +NL TLDLS N S KL +
Sbjct: 112 LHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 170
Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLN---LSHNLVVSLQEPY 518
K + I N S L L++S NQI P +G FLN L +L L
Sbjct: 171 KSEELDIFANSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 229
Query: 519 SISGIRFLDLHSNQL--RGNIPYMS---PNTSYVDYSNNNFTSIPADIGNFMSETEYFYF 573
+ + IR L L ++QL N ++ N + +D S NN + D ++ + EYF+
Sbjct: 230 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 289
Query: 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXX 633
N++ + S+ N + L+L + TK S +L
Sbjct: 290 --EYNNIQHLFSHSLHGLFNVRYLNLKRS----------FTKQSISL--------ASLPK 329
Query: 634 XSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS----DNFPCWLRN 689
D F L+ L++ N + G+ L+ L L +++ S N
Sbjct: 330 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 389
Query: 690 ASSLQVLVLRSNNFSGHISCPRNKVSW-PLLQIVDLACNKFSGRLS-QKWLLTMMVAETK 747
S L +L L N S + SW L+++DL N+ L+ Q+W
Sbjct: 390 HSPLHILNLTKNKIS---KIESDAFSWLGHLEVLDLGLNEIGQELTGQEW---------- 436
Query: 748 SGSEVNHLGIEMPSNQFYEVR-----VTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP 802
G E N I + N++ ++ + +++ + ++ + + N+ +S P
Sbjct: 437 RGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS------------P 483
Query: 803 VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
R+L L++S+N + L+++E LDL NNL+
Sbjct: 484 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 433 PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW 492
PI L +L+ L+L SN F + + + K+ +L ++D+ N ++ +P
Sbjct: 538 PIYFLKGLSHLHILNLESNGFDEI--------PVEVFKDLFELKIIDLGLNNLNT-LPAS 588
Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS---YVDY 549
++ +LK LNL NL+ S+++ + G F +L +R N P+ S +V++
Sbjct: 589 VFN-NQVSLKSLNLQKNLITSVEK--KVFGPAFRNLTELDMRFN-PFDCTCESIAWFVNW 644
Query: 550 SNNNFTSIPADIGNFMSETEYFY 572
N T+IP +++ T Y
Sbjct: 645 INETHTNIPELSSHYLCNTPPHY 667
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSN 329
IG+L+ L + V+ +P +NLT L H+D SSN
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 119/526 (22%), Positives = 206/526 (39%), Gaps = 94/526 (17%)
Query: 361 TFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXX 420
T + QL +L + G N++S P LP L++L L +N+ +QL +
Sbjct: 46 TRYSQLTSLDV---GFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTE 101
Query: 421 XXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS------------------- 461
N ++ + + F + +NL TLDLS N S KL +
Sbjct: 102 LHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160
Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLN---LSHNLVVSLQEPY 518
K + I N S L L++S NQI P +G FLN L +L L
Sbjct: 161 KSEELDIFANSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 519 SISGIRFLDLHSNQL--RGNIPYMS---PNTSYVDYSNNNFTSIPADIGNFMSETEYFYF 573
+ + IR L L ++QL N ++ N + +D S NN + D ++ + EYF+
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279
Query: 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXX 633
N++ + S+ N + L+L + TK S +L
Sbjct: 280 --EYNNIQHLFSHSLHGLFNVRYLNLKRS----------FTKQSISL--------ASLPK 319
Query: 634 XSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS------DNFPCWL 687
D F L+ L++ N + G+ L+ L L +++ S + F
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 688 RNASSLQVLVLRSNNFSGHISCPRNKVSW-PLLQIVDLACNKFSGRLS-QKWLLTMMVAE 745
S L +L L N S + SW L+++DL N+ L+ Q+W
Sbjct: 380 H--SPLHILNLTKNKIS---KIESDAFSWLGHLEVLDLGLNEIGQELTGQEW-------- 426
Query: 746 TKSGSEVNHLGIEMPSNQFYEVR-----VTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGP 800
G E N I + N++ ++ + +++ + ++ + + N+ +S
Sbjct: 427 --RGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS----------- 472
Query: 801 IPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
P R+L L++S+N + L+++E LDL NNL+
Sbjct: 473 -PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 433 PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW 492
PI L +L+ L+L SN F + + + K+ +L ++D+ N ++ +P
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEI--------PVEVFKDLFELKIIDLGLNNLNT-LPAS 578
Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS---YVDY 549
++ +LK LNL NL+ S+++ + G F +L +R N P+ S +V++
Sbjct: 579 VFN-NQVSLKSLNLQKNLITSVEK--KVFGPAFRNLTELDMRFN-PFDCTCESIAWFVNW 634
Query: 550 SNNNFTSIPADIGNFMSETEYFY 572
N T+IP +++ T Y
Sbjct: 635 INETHTNIPELSSHYLCNTPPHY 657
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 225 LKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS 284
L+ LDLS C +Q + L TL L+ N + +L F SSL+ L+ T L+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 285 GTLPDSIGNLENLTRVEVSSCNFTG-PIPPSMANLTQLFHMDFSSN 329
IG+L+ L + V+ +P +NLT L H+D SSN
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 805 MGRFRSLYALNMSHNALTG-SIPSSFGNLKEIESLDLSMNNL 845
+G ++L LN++HN + +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 131/348 (37%), Gaps = 79/348 (22%)
Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXX 417
+S T +Q+ LQ LG S+ G + L NL + SNNQ + P
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---LKNLTK 86
Query: 418 XXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
N++ P++ L NL L L +N+ + I LKN + L+
Sbjct: 87 LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD----------IDPLKNLTNLNR 133
Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537
L++S N IS + G +L+ LN S N V L+ +++ + LD+ SN++
Sbjct: 134 LELSSNTIS----DISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKV---- 185
Query: 538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP------------ 585
+DI T +A NN ++ + P
Sbjct: 186 ---------------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 586 --------ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
++ TN LDL+NN +S P +TK + L++
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-LKLGANQISNISP----- 278
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
G L L+L+ NQL+ + P ++N L L L N ISD P
Sbjct: 279 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 56/259 (21%)
Query: 289 DSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHF--FGPIPSLHKXXXXXX 346
D + NL NL R+E+SS + +++ LT L ++FSSN P+ +L
Sbjct: 123 DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 180
Query: 347 XXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
+ +L NL+ ++ +N +S P L +L NL+ L L+ NQ ++
Sbjct: 181 SSNKVSDI------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 231
Query: 407 LPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSN------------KFS 454
I L NL LDL++N K +
Sbjct: 232 ---------------------------IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 455 RLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSL 514
LKL +++ I L + L+ L++++NQ+ P I + NL +L L N + +
Sbjct: 265 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNL--KNLTYLTLYFNNISDI 320
Query: 515 QEPYSISGIRFLDLHSNQL 533
S++ ++ L ++N++
Sbjct: 321 SPVSSLTKLQRLFFYNNKV 339
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 119/526 (22%), Positives = 206/526 (39%), Gaps = 94/526 (17%)
Query: 361 TFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXX 420
T + QL +L + G N++S P LP L++L L +N+ +QL +
Sbjct: 51 TRYSQLTSLDV---GFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTE 106
Query: 421 XXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS------------------- 461
N ++ + + F + +NL TLDLS N S KL +
Sbjct: 107 LHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 165
Query: 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLN---LSHNLVVSLQEPY 518
K + I N S L L++S NQI P +G FLN L +L L
Sbjct: 166 KSEELDIFANSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 224
Query: 519 SISGIRFLDLHSNQL--RGNIPYMS---PNTSYVDYSNNNFTSIPADIGNFMSETEYFYF 573
+ + IR L L ++QL N ++ N + +D S NN + D ++ + EYF+
Sbjct: 225 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 284
Query: 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXX 633
N++ + S+ N + L+L + TK S +L
Sbjct: 285 --EYNNIQHLFSHSLHGLFNVRYLNLKRS----------FTKQSISL--------ASLPK 324
Query: 634 XSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS------DNFPCWL 687
D F L+ L++ N + G+ L+ L L +++ S + F
Sbjct: 325 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 384
Query: 688 RNASSLQVLVLRSNNFSGHISCPRNKVSW-PLLQIVDLACNKFSGRLS-QKWLLTMMVAE 745
S L +L L N S + SW L+++DL N+ L+ Q+W
Sbjct: 385 H--SPLHILNLTKNKIS---KIESDAFSWLGHLEVLDLGLNEIGQELTGQEW-------- 431
Query: 746 TKSGSEVNHLGIEMPSNQFYEVR-----VTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGP 800
G E N I + N++ ++ + +++ + ++ + + N+ +S
Sbjct: 432 --RGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS----------- 477
Query: 801 IPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
P R+L L++S+N + L+++E LDL NNL+
Sbjct: 478 -PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 433 PISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW 492
PI L +L+ L+L SN F + + + K+ +L ++D+ N ++ +P
Sbjct: 533 PIYFLKGLSHLHILNLESNGFDEI--------PVEVFKDLFELKIIDLGLNNLNT-LPAS 583
Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTS---YVDY 549
++ +LK LNL NL+ S+++ + G F +L +R N P+ S +V++
Sbjct: 584 VFN-NQVSLKSLNLQKNLITSVEK--KVFGPAFRNLTELDMRFN-PFDCTCESIAWFVNW 639
Query: 550 SNNNFTSIPADIGNFMSETEYFY 572
N T+IP +++ T Y
Sbjct: 640 INETHTNIPELSSHYLCNTPPHY 662
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 67/304 (22%)
Query: 289 DSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHF--FGPIPSLHKXXXXXX 346
D + NL NL R+E+SS + +++ LT L + FSSN P+ +L
Sbjct: 123 DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 347 XXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
+ +L NL+ ++ +N +S P L +L NL+ L L+ NQ ++
Sbjct: 181 SSNKVSDI------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 231
Query: 407 LPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAI 466
I L NL LDL++N+ S L P
Sbjct: 232 ---------------------------IGTLASLTNLTDLDLANNQISNL-----AP--- 256
Query: 467 PILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFL 526
L ++L+ L + NQIS P G L L L+ N + + ++ + +L
Sbjct: 257 --LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPISNLKNLTYL 310
Query: 527 DLHSNQLRGNIPYMSPNTSYVD-----YSNNNFTSIPADIGNFMSETEYFYFVAANNSLA 581
L+ N NI +SP +S +SNN +D+ + + T + A +N ++
Sbjct: 311 TLYFN----NISDISPVSSLTKLQRLFFSNNKV----SDVSSLANLTNINWLSAGHNQIS 362
Query: 582 GVIP 585
+ P
Sbjct: 363 DLTP 366
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 131/348 (37%), Gaps = 79/348 (22%)
Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXX 417
+S T +Q+ LQ LG S+ G + L NL + SNNQ + P
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---LKNLTK 86
Query: 418 XXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
N++ P++ L NL L L +N+ + I LKN + L+
Sbjct: 87 LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD----------IDPLKNLTNLNR 133
Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537
L++S N IS + G +L+ L+ S N V L+ +++ + LD+ SN++
Sbjct: 134 LELSSNTIS----DISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKV---- 185
Query: 538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP------------ 585
+DI T +A NN ++ + P
Sbjct: 186 ---------------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 586 --------ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
++ TN LDL+NN +S P +TK + L++
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-LKLGANQISNISP----- 278
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
G L L+L+ NQL+ + P ++N L L L N ISD P
Sbjct: 279 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 131/348 (37%), Gaps = 79/348 (22%)
Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXX 417
+S T +Q+ LQ LG S+ G + L NL + SNNQ + P
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---LKNLTK 86
Query: 418 XXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
N++ P++ L NL L L +N+ + I LKN + L+
Sbjct: 87 LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD----------IDPLKNLTNLNR 133
Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537
L++S N IS + G +L+ L+ S N V L+ +++ + LD+ SN++
Sbjct: 134 LELSSNTIS----DISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKV---- 185
Query: 538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP------------ 585
+DI T +A NN ++ + P
Sbjct: 186 ---------------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 586 --------ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
++ TN LDL+NN +S P +TK + L++
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-LKLGANQISNISP----- 278
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
G L L+L+ NQL+ + P ++N L L L N ISD P
Sbjct: 279 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 323
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 107/259 (41%), Gaps = 56/259 (21%)
Query: 289 DSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHF--FGPIPSLHKXXXXXX 346
D + NL NL R+E+SS + +++ LT L + FSSN P+ +L
Sbjct: 123 DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 347 XXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406
+ +L NL+ ++ +N +S P L +L NL+ L L+ NQ ++
Sbjct: 181 SSNKVSDI------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 231
Query: 407 LPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSN------------KFS 454
I L NL LDL++N K +
Sbjct: 232 ---------------------------IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 455 RLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSL 514
LKL +++ I L + L+ L++++NQ+ P I + NL +L L N + +
Sbjct: 265 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNL--KNLTYLTLYFNNISDI 320
Query: 515 QEPYSISGIRFLDLHSNQL 533
S++ ++ L ++N++
Sbjct: 321 SPVSSLTKLQRLFFYNNKV 339
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 64/319 (20%)
Query: 454 SRLKLASSKPRAIP--ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV 511
+RL+L S+K +++P + +QL+ L +S N +S + + G+ +LK+L+LS N V
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 512 VSLQEPY-SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEY 570
+++ + + + LD N+ MS + ++ N I DI + +
Sbjct: 91 ITMSSNFLGLEQLEHLDFQ----HSNLKQMSEFSVFLSLRN----LIYLDISHTHTR--- 139
Query: 571 FYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT-IPACLITKSSSTLEVXXXXXXX 629
VA N G+ ++ +VL ++ N+ +P
Sbjct: 140 ---VAFNGIFNGL--------SSLEVLKMAGNSFQENFLP-------------------- 168
Query: 630 XXXXXSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL-RSNYIS-DNFPCWL 687
IF L LDLS QL+ + P + + + LQVL++ +N+ S D FP
Sbjct: 169 -------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--Y 219
Query: 688 RNASSLQVLVLRSNNFSGHISCPRNK--VSWP-LLQIVDLACNKFSGRLSQKWLLTMMVA 744
+ +SLQVL N HI + + +P L ++L N F+ + L +
Sbjct: 220 KCLNSLQVLDYSLN----HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275
Query: 745 ETKSGSEVNHLGIEMPSNQ 763
+ + EV + PS++
Sbjct: 276 QRQLLVEVERMECATPSDK 294
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 23/212 (10%)
Query: 648 LDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRN--ASSLQVLVLRSNNFSG 705
L+L N+LQ + L L L SN +S C + +SL+ L L +F+G
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL---SFNG 89
Query: 706 HISCPRNKVSWPLLQIVDLA------CNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM 759
I+ N + L+ +D ++FS LS + L+ + ++ T + N + +
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSI------DFSSNNFEGPIPVEMGRFRSLYA 813
S EV + + G + +P+IFT + D S E P SL
Sbjct: 150 SS---LEV---LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 814 LNMSHNALTGSIPSSFGNLKEIESLDLSMNNL 845
LNMSHN + L ++ LD S+N++
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 59/139 (42%), Gaps = 31/139 (22%)
Query: 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLI---LS 279
T+LK LDLS G+ L + LE LD + L Q S F SLR+LI +S
Sbjct: 78 TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDIS 134
Query: 280 HT-----------GLSGT--------------LPDSIGNLENLTRVEVSSCNFTGPIPPS 314
HT GLS LPD L NLT +++S C P +
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 315 MANLTQLFHMDFSSNHFFG 333
+L+ L ++ S N+FF
Sbjct: 195 FNSLSSLQVLNMSHNNFFS 213
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 25/144 (17%)
Query: 434 ISIFFELRNLYTLDLSS--------------NKFSRLKLA--SSKPRAIP-ILKNQSQLS 476
S+F LRNL LD+S + LK+A S + +P I L+
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178
Query: 477 VLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE-PYS-ISGIRFLDLHSNQL- 533
LD+S Q+ P + S L+ LN+SHN SL PY ++ ++ LD N +
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSS--LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 534 ---RGNIPYMSPNTSYVDYSNNNF 554
+ + + + ++++ + N+F
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDF 260
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 219 LAHLTNLKALDLSECGLQGKFPEKILH-VPTLETLDLSINQLLQGSLPNFPKNSSLRDLI 277
++ + L+ LDLS C ++ +K H + L L L+ N + S +F +SL +L+
Sbjct: 52 FSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNF--TGPIPPSMANLTQLFHMDFSSNH 330
T L+ IG L L ++ V+ NF + +P +NLT L H+D S N+
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNY 164
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 436 IFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQ--SQLSVLDISDNQISGE-VPNW 492
+F++L +Y+L K R+ + +SK +P +Q L LD+S+N + E + N
Sbjct: 324 LFYDLSTVYSL---LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 380
Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNN 552
+ +L+ L LS N + S+Q+ G I N + +D S N
Sbjct: 381 ACKGAWPSLQTLVLSQNHLRSMQKT-----------------GEILLTLKNLTSLDISRN 423
Query: 553 NFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNL 604
F +P D + + + N S G+ C +VLD+SNNNL
Sbjct: 424 TFHPMP-DSCQWPEKMRFL-----NLSSTGIRVVKTCIPQTLEVLDVSNNNL 469
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 219 LAHLTNLKALDLSECGLQGKFPEKILH-VPTLETLDLSINQLLQGSLPNFPKNSSLRDLI 277
++ + L+ LDLS C ++ +K H + L L L+ N + S +F +SL +L+
Sbjct: 47 FSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 278 LSHTGLSGTLPDSIGNLENLTRVEVSSCNF--TGPIPPSMANLTQLFHMDFSSNH 330
T L+ IG L L ++ V+ NF + +P +NLT L H+D S N+
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNY 159
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 29/172 (16%)
Query: 436 IFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQ--SQLSVLDISDNQISGE-VPNW 492
+F++L +Y+L K R+ + +SK +P +Q L LD+S+N + E + N
Sbjct: 298 LFYDLSTVYSL---LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNN 552
+ +L+ L LS N + S+Q+ G I N + +D S N
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKT-----------------GEILLTLKNLTSLDISRN 397
Query: 553 NFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNL 604
F +P D + + + N S G+ C +VLD+SNNNL
Sbjct: 398 TFHPMP-DSCQWPEKMRFL-----NLSSTGIRVVKTCIPQTLEVLDVSNNNL 443
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 170 ALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALD 229
AL L NL L L+G L N K +L + L N S LTNL L+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 230 LSECGLQGKFPEKILHVPT-LETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGT 286
L+ LQ P+ + T L LDLS NQL SLP F K + L+DL L L +
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQL--QSLPEGVFDKLTQLKDLRLYQNQLK-S 195
Query: 287 LPDSI 291
+PD +
Sbjct: 196 VPDGV 200
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 51/202 (25%)
Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXX 421
+++L NL+ +VL N L S+P +F L NL L L++NQ ++
Sbjct: 105 FDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS---------------- 147
Query: 422 XXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS 481
+P +F +L NL LDLS N+ L P + +QL L +
Sbjct: 148 ----------LPKGVFDKLTNLTELDLSYNQLQSL------PEG--VFDKLTQLKDLRLY 189
Query: 482 DNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSIS--GIRFL----DLHSNQLRG 535
NQ+ VP+ +++ + +L+++ L N P+ + GIR+L + HS +R
Sbjct: 190 QNQLKS-VPDGVFDRLT-SLQYIWLHDN-------PWDCTCPGIRYLSEWINKHSGVVRN 240
Query: 536 NIPYMSPNTSYVDYSNNNFTSI 557
+ ++P+++ S SI
Sbjct: 241 SAGSVAPDSAKCSGSGKPVRSI 262
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Query: 501 LKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPAD 560
L+ LNLS N++ + S+S +R LDL++N ++ + + P+ + +NNN + +
Sbjct: 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--VGPSIETLHAANNNISRVSCS 117
Query: 561 IGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTL 620
G + Y ANN + + + Q LDL N + T+ + SS TL
Sbjct: 118 RG---QGKKNIYL--ANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171
Query: 621 EVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPK 661
E +F L+ LDLS N+L + P+
Sbjct: 172 EHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLAFMGPE 209
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 13/162 (8%)
Query: 501 LKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPAD 560
L+ LNLS N++ + S+S +R LDL++N ++ + + P+ + +NNN + +
Sbjct: 60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--VGPSIETLHAANNNISRVSCS 117
Query: 561 IGNFMSETEYFYFVAANNSLAGVIP-ESVCKATNFQVLDLSNNNLSGTIPACLITKSSST 619
G + Y ANN + + + C+ + Q LDL N + T+ + SS T
Sbjct: 118 RGQG---KKNIYL--ANNKITMLRDLDEGCR-SRVQYLDLKLNEID-TVNFAELAASSDT 170
Query: 620 LEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPK 661
LE +F L+ LDLS N+L + P+
Sbjct: 171 LEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLAFMGPE 209
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 31/169 (18%)
Query: 436 IFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQ--SQLSVLDISDNQISGE-VPNW 492
+F++L LY+L + + R+ + +SK +P L +Q L LD+S+N + E + N
Sbjct: 298 LFYDLSTLYSL---TERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNS 354
Query: 493 IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNN 552
E +L+ L L N + SL++ +G L L N + +D S N
Sbjct: 355 ACEDAWPSLQTLILRQNHLASLEK----TGETLLTL-------------KNLTNIDISKN 397
Query: 553 NFTSIPADIGNFMSETEYFYFVAAN-NSLAGVIPESVCKATNFQVLDLS 600
+F S+P + + + +Y + +S+ G IP+++ ++LD+S
Sbjct: 398 SFHSMP-ETCQWPEKMKYLNLSSTRIHSVTGCIPKTL------EILDVS 439
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 111 EISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKA 170
++ +L+ L TL+LS P+ + L EL +L R+ ++A + + +
Sbjct: 368 QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL------ELLDLAFTRLHINAPQSPF-QN 420
Query: 171 LSFLPNLQVLSLSGCDLSGPINHYLAKS---RSLSVIRLHYNYGLSSGTEFLAHLTNLKA 227
L FL QVL+L+ C L H LA R L++ H+ G + T L + +L+
Sbjct: 421 LHFL---QVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEV 477
Query: 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQL 259
L LS CGL + + + +DLS N L
Sbjct: 478 LILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 26/157 (16%)
Query: 248 TLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF 307
++E+L+L ++ S F + L++L L+ T L G LP + L L ++ +S +F
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 308 TGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLL 367
S AN L H+ + G + LH + E+L
Sbjct: 311 DQLCQISAANFPSLTHL-----YIRGNVKKLH------------------LGVGCLEKLG 347
Query: 368 NLQIVVLGHNSLSGSIPRSLFL--LPNLEMLQLSNNQ 402
NLQ + L HN + S SL L L +L+ L LS+N+
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE 384
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGP--IPVEMGRFRSLYALNMS 817
PS +R V + + L+ ++D S N+ E +++ L LN+S
Sbjct: 322 PSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLS 381
Query: 818 HNALTGSIPSSFGNLKEIESLDLSMNNLSGKIP 850
HN G +F ++E LDL+ L P
Sbjct: 382 HNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 117/497 (23%), Positives = 177/497 (35%), Gaps = 136/497 (27%)
Query: 369 LQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRL 428
L I+ G NS+S P +LP L++L L +N+
Sbjct: 51 LAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL------------------------- 85
Query: 429 EGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGE 488
+ F NL LDL SN ++K S P KNQ L LD+S N +S
Sbjct: 86 -SQISDQTFVFCTNLTELDLMSNSIHKIK---SNP-----FKNQKNLIKLDLSHNGLSST 136
Query: 489 VPNWIWEVGSG----NLKFLNLSHNLVVSLQ----EPYSISGIRFLDLHSNQLRGNIPYM 540
++G+G NL+ L L+ N +++L+ E S +R LDL SN L+ P
Sbjct: 137 ------KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSP-- 188
Query: 541 SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC---KATNFQVL 597
G F + + F + N L + E +C T+ Q L
Sbjct: 189 ---------------------GCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNL 227
Query: 598 DLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGD--CGLQILDLSGNQL 655
L+NN L T S++ F G L LDLS N L
Sbjct: 228 SLANNQLLAT---------------------------SESTFSGLKWTNLTQLDLSYNNL 260
Query: 656 QGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVS 715
V S + L+ L L N I P S+L+ L L+ F+
Sbjct: 261 HDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR-AFTK---------- 309
Query: 716 WPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKG 775
Q V LA + S +WL + + M N +
Sbjct: 310 ----QSVSLASHPNIDDFSFQWLKYLEY-------------LNMDDNNIPSTKSNTFTGL 352
Query: 776 IEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEI 835
+ +K L + FTS+ +N E + + L LN++ N ++ +F L ++
Sbjct: 353 VSLKYLSLSKTFTSLQTLTN--ETFVSLAHS---PLLTLNLTKNHISKIANGTFSWLGQL 407
Query: 836 ESLDLSMNNLSGKIPAQ 852
LDL +N + K+ Q
Sbjct: 408 RILDLGLNEIEQKLSGQ 424
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 33/200 (16%)
Query: 170 ALSFLPNLQVLSLSGCDL--SGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKA 227
L L NL+ L LS D+ S N L L + L YN LS TE L+
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 228 LDLSECGLQGK---FPEKILHVPTL-----ETLDLSINQLLQGSLP----------NFPK 269
LDL+ L+ K P + LH+ + LD+S QL G LP +FPK
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPK 463
Query: 270 NS-----------SLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANL 318
+ L L+LS LS + +L+ + V++S T ++++L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
Query: 319 TQLFHMDFSSNHFFGPIPSL 338
++ ++ +SNH +PSL
Sbjct: 524 KGIY-LNLASNHISIILPSL 542
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 73/356 (20%), Positives = 126/356 (35%), Gaps = 64/356 (17%)
Query: 537 IPYMSPNTSYVDYSNNNFTSIPA-------DIGNFMSETEYFYFVAANNSLAGVIPESVC 589
+P + + +YVD S N+ + D+ E + V NN+ G+ +
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 590 KA----------------TNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXX 633
K N +VL L+ NL G + + K ++LE+
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144
Query: 634 XSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC--NMLQVLDLRSNYISDNFPCWLRNAS 691
+ F +LDL+ N+++ + + L N +L L S + D WL
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL---- 200
Query: 692 SLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS--- 748
G C N + +DL+ N F +++++ + + +S
Sbjct: 201 -------------GWEKCG-NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 749 ------GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSI----------DF 792
GS H + P N ++ VK ++ K+ + S+
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 793 SSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS-FGNLKEIESLDLSMNNLSG 847
+ N L LN+S N L GSI S F NL ++E LDLS N++
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 356 GGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFE 404
G I S +E L L+++ L +N + +S LPNL+ L L NQ +
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 154 HLDRVDLSASGTEWCKALSF--LPNLQVLSLSGCDLSGPI-NHYLAKSRSLSVIRLHYNY 210
H++ VDLS + SF L +LQ L + I N+ SL +++L YN
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 211 GLSSGTEFLAHLTNLKALDLSECGLQG 237
L T L NL+ L L++C L G
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDG 117
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNN 602
N +D S+N TS+PA++G+ + +YFYF +++ +P N Q L + N
Sbjct: 271 NLRVLDLSHNRLTSLPAELGSCF-QLKYFYFF---DNMVTTLPWEFGNLCNLQFLGVEGN 326
Query: 603 NLSGTIPACLITKSSSTL 620
L L KS + L
Sbjct: 327 PLEKQFLKILTEKSVTGL 344
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 439 ELRNLYTLDLSSNKF-----SRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNW 492
+L NL ++S+N F +RL L + +P +KN S L VLD+S N+++ +P
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPA- 287
Query: 493 IWEVGSG-NLKFLNLSHNLVVSLQEPY-SISGIRFLDLHSNQLR 534
E+GS LK+ N+V +L + ++ ++FL + N L
Sbjct: 288 --ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 769 VTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS 828
V + KG+++ +P T + N F +P E+ ++ L +++S+N ++ S
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 829 FGNLKEIESLDLSMNNL 845
F N+ ++ +L LS N L
Sbjct: 74 FSNMTQLLTLILSYNRL 90
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 130/348 (37%), Gaps = 80/348 (22%)
Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXX 417
+S T +Q+ LQ LG S+ G + L NL + SNNQ + P
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---LKNLTK 86
Query: 418 XXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
N++ P++ L NL L L +N+ + I LKN + L+
Sbjct: 87 LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD----------IDPLKNLTNLNR 133
Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537
L++S N IS + G +L+ LN N V L+ +++ + LD+ SN++
Sbjct: 134 LELSSNTIS----DISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKV---- 184
Query: 538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP------------ 585
+DI T +A NN ++ + P
Sbjct: 185 ---------------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Query: 586 --------ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
++ TN LDL+NN +S P +TK + L++
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-LKLGANQISNISP----- 277
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
G L L+L+ NQL+ + P ++N L L L N ISD P
Sbjct: 278 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 106/276 (38%), Gaps = 91/276 (32%)
Query: 289 DSIGNLENLTRVEVSS-----------------CNFTGPIP--PSMANLTQLFHMDFSSN 329
D + NL NL R+E+SS NF + +ANLT L +D SSN
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSN 182
Query: 330 HFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389
I L K L NL+ ++ +N +S P L +
Sbjct: 183 KV-SDISVLAK-------------------------LTNLESLIATNNQISDITP--LGI 214
Query: 390 LPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLS 449
L NL+ L L+ NQ ++ I L NL LDL+
Sbjct: 215 LTNLDELSLNGNQLKD----------------------------IGTLASLTNLTDLDLA 246
Query: 450 SN------------KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVG 497
+N K + LKL +++ I L + L+ L++++NQ+ P I +
Sbjct: 247 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNL- 303
Query: 498 SGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQL 533
NL +L L N + + S++ ++ L ++N++
Sbjct: 304 -KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 338
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 35/225 (15%)
Query: 648 LDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706
L L NQ+ + P K+L N N L+ L SN ISD L +SLQ L NF
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQL-----NFGNQ 161
Query: 707 ISCPRNKVSWPLLQIVDLACNKFS--GRLSQKWLLTMMVAETKSGSEVNHLGI------- 757
++ + + L+ +D++ NK S L++ L ++A S++ LGI
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 221
Query: 758 EMPSNQFYEVRVTVTVKGI---EIKLLKVPNI--------FTSIDFSSNNFEGPIPVEMG 806
+ NQ ++ ++ + ++ ++ N+ T + +N P +
Sbjct: 222 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LA 279
Query: 807 RFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPA 851
+L L ++ N L P NLK + L L NN+S P
Sbjct: 280 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 120/321 (37%), Gaps = 102/321 (31%)
Query: 289 DSIGNLENLTRVEVSS-----------------CNFTGPIP--PSMANLTQLFHMDFSSN 329
D + NL NL R+E+SS NF + +ANLT L +D SSN
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSN 182
Query: 330 HFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389
I L K L NL+ ++ +N +S P L +
Sbjct: 183 KV-SDISVLAK-------------------------LTNLESLIATNNQISDITP--LGI 214
Query: 390 LPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDLS 449
L NL+ L L+ NQ ++ I L NL LDL+
Sbjct: 215 LTNLDELSLNGNQLKD----------------------------IGTLASLTNLTDLDLA 246
Query: 450 SNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509
+N+ S L P L ++L+ L + NQIS P G L L L+ N
Sbjct: 247 NNQISNL-----AP-----LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNEN 292
Query: 510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVD-----YSNNNFTSIPADIGNF 564
+ + ++ + +L L+ N NI +SP +S +SNN +D+ +
Sbjct: 293 QLEDISPISNLKNLTYLTLYFN----NISDISPVSSLTKLQRLFFSNNKV----SDVSSL 344
Query: 565 MSETEYFYFVAANNSLAGVIP 585
+ T + A +N ++ + P
Sbjct: 345 ANLTNINWLSAGHNQISDLTP 365
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 138/367 (37%), Gaps = 82/367 (22%)
Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXX 417
+S T +Q+ LQ LG S+ G + L NL + SNNQ + P
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---LKNLTK 86
Query: 418 XXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
N++ P++ L NL L L +N+ + I LKN + L+
Sbjct: 87 LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD----------IDPLKNLTNLNR 133
Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537
L++S N IS + G +L+ LN N V L+ +++ + LD+ SN++
Sbjct: 134 LELSSNTIS----DISALSGLTSLQQLNFG-NQVTDLKPLANLTTLERLDISSNKV---- 184
Query: 538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP------------ 585
+DI T +A NN ++ + P
Sbjct: 185 ---------------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Query: 586 --------ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDT 637
++ TN LDL+NN +S P +TK + L++
Sbjct: 224 NGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-LKLGANQISNISP----- 277
Query: 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697
G L L+L+ NQL+ + P ++N L L L N ISD P + + LQ L
Sbjct: 278 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLF 332
Query: 698 LRSNNFS 704
+N S
Sbjct: 333 FSNNKVS 339
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 35/225 (15%)
Query: 648 LDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706
L L NQ+ + P K+L N N L+ L SN ISD L +SLQ L NF
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLE---LSSNTISD--ISALSGLTSLQQL-----NFGNQ 161
Query: 707 ISCPRNKVSWPLLQIVDLACNKFS--GRLSQKWLLTMMVAETKSGSEVNHLGI------- 757
++ + + L+ +D++ NK S L++ L ++A S++ LGI
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 221
Query: 758 EMPSNQFYEVRVTVTVKGI---EIKLLKVPNI--------FTSIDFSSNNFEGPIPVEMG 806
+ NQ ++ ++ + ++ ++ N+ T + +N P +
Sbjct: 222 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LA 279
Query: 807 RFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPA 851
+L L ++ N L P NLK + L L NN+S P
Sbjct: 280 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 322
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 150 LTELHLDRVDLSASGTEWCK---ALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRL 206
L E + +DLS S E LS LQ LSL G LS PI + LAK+ +L +RL
Sbjct: 52 LDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL--VRL 109
Query: 207 HYNYGLSSGTEF-----LAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL-L 260
+ + G S +EF L+ + L L+LS C F EK + V + +I QL L
Sbjct: 110 NLS-GCSGFSEFALQTLLSSCSRLDELNLSWC---FDFTEKHVQVAVAHVSE-TITQLNL 164
Query: 261 QGSLPNFPKN 270
G N K+
Sbjct: 165 SGYRKNLQKS 174
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 135/368 (36%), Gaps = 84/368 (22%)
Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXX 417
+S T +Q+ LQ LG S+ G + L NL + SNNQ + P
Sbjct: 39 VSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---LKNLTK 90
Query: 418 XXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
N++ P++ L NL L L +N+ + I LKN + L+
Sbjct: 91 LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD----------IDPLKNLTNLNR 137
Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSH-NLVVSLQEPYSISGIRFLDLHSNQLRGN 536
L++S N IS SG LS N V L+ +++ + LD+ SN++
Sbjct: 138 LELSSNTISD------ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--- 188
Query: 537 IPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP----------- 585
+DI T +A NN ++ + P
Sbjct: 189 ----------------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 226
Query: 586 ---------ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSD 636
++ TN LDL+NN +S P +TK + L++
Sbjct: 227 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-LKLGANQISNISP---- 281
Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVL 696
G L L+L+ NQL+ + P ++N L L L N ISD P + + LQ L
Sbjct: 282 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRL 335
Query: 697 VLRSNNFS 704
+N S
Sbjct: 336 FFANNKVS 343
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 120/322 (37%), Gaps = 104/322 (32%)
Query: 289 DSIGNLENLTRVEVSS--------------------CNFTGPIPPSMANLTQLFHMDFSS 328
D + NL NL R+E+SS N + P +ANLT L +D SS
Sbjct: 127 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISS 185
Query: 329 NHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF 388
N I L K L NL+ ++ +N +S P L
Sbjct: 186 NKV-SDISVLAK-------------------------LTNLESLIATNNQISDITP--LG 217
Query: 389 LLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDL 448
+L NL+ L L+ NQ ++ I L NL LDL
Sbjct: 218 ILTNLDELSLNGNQLKD----------------------------IGTLASLTNLTDLDL 249
Query: 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSH 508
++N+ S L P L ++L+ L + NQIS P G L L L+
Sbjct: 250 ANNQISNL-----AP-----LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNE 295
Query: 509 NLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVD-----YSNNNFTSIPADIGN 563
N + + ++ + +L L+ N NI +SP +S ++NN +D+ +
Sbjct: 296 NQLEDISPISNLKNLTYLTLYFN----NISDISPVSSLTKLQRLFFANNKV----SDVSS 347
Query: 564 FMSETEYFYFVAANNSLAGVIP 585
+ T + A +N ++ + P
Sbjct: 348 LANLTNINWLSAGHNQISDLTP 369
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 522 GIRFLDLHSNQLRGNI-PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL 580
I L+L SN L G++ + P +D NN SIP D+ + + E A+N L
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE---LNVASNQL 485
Query: 581 AGVIPESVCKATNFQVLDLSNNNLSGTIPA 610
V + T+ Q + L +N T P
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 127/349 (36%), Gaps = 82/349 (23%)
Query: 358 ISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXX 417
+S T +Q+ LQ LG S+ G + L NL + SNNQ + P
Sbjct: 40 VSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDITP---LKNLTK 91
Query: 418 XXXXXXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSV 477
N++ P++ L NL L L +N+ + I LKN + L+
Sbjct: 92 LVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD----------IDPLKNLTNLNR 138
Query: 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSH-NLVVSLQEPYSISGIRFLDLHSNQLRGN 536
L++S N IS SG LS N V L+ +++ + LD+ SN++
Sbjct: 139 LELSSNTISD------ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--- 189
Query: 537 IPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIP----------- 585
+DI T +A NN ++ + P
Sbjct: 190 ----------------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 227
Query: 586 ---------ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSD 636
++ TN LDL+NN +S P +TK + L++
Sbjct: 228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE-LKLGANQISNISP---- 282
Query: 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC 685
G L L+L+ NQL+ + P ++N L L L N ISD P
Sbjct: 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 327
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 106/277 (38%), Gaps = 93/277 (33%)
Query: 289 DSIGNLENLTRVEVSS--------------------CNFTGPIPPSMANLTQLFHMDFSS 328
D + NL NL R+E+SS N + P +ANLT L +D SS
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISS 186
Query: 329 NHFFGPIPSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF 388
N I L K L NL+ ++ +N +S P L
Sbjct: 187 NKV-SDISVLAK-------------------------LTNLESLIATNNQISDITP--LG 218
Query: 389 LLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIFFELRNLYTLDL 448
+L NL+ L L+ NQ ++ I L NL LDL
Sbjct: 219 ILTNLDELSLNGNQLKD----------------------------IGTLASLTNLTDLDL 250
Query: 449 SSN------------KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV 496
++N K + LKL +++ I L + L+ L++++NQ+ P I +
Sbjct: 251 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNL 308
Query: 497 GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQL 533
NL +L L N + + S++ ++ L ++N++
Sbjct: 309 --KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKV 343
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 479 DISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQ--EP-YSISGIRFLDLHS----- 530
++S+N+ISG++ + NLK LNLS N + L EP + ++ LDL +
Sbjct: 75 ELSENRISGDL--EVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 132
Query: 531 -NQLRGNIPYMSPNTSYVD-YSNNNFTSIPADIGNFM 565
N R N+ + P Y+D Y +N + +D+ ++
Sbjct: 133 LNAYRENVFKLLPQVMYLDGYDRDNKEAPDSDVEGYV 169
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 37/134 (27%)
Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXX 421
+++L NL+ +VL N L S+P +F L NL L L +NQ ++
Sbjct: 105 FDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQS---------------- 147
Query: 422 XXXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS 481
+P +F +L NL LDL +N+ L P + +QL L ++
Sbjct: 148 ----------LPKGVFDKLTNLTRLDLDNNQLQSL------PEG--VFDKLTQLKQLSLN 189
Query: 482 DNQISGEVPNWIWE 495
DNQ+ VP+ +++
Sbjct: 190 DNQLKS-VPDGVFD 202
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLF-LLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXX 421
+++L NL + L HN L S+P+ +F L NL L L NNQ ++ LPE
Sbjct: 129 FDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQL 186
Query: 422 XXXGNRLEGPVPISIFFELRNL 443
N+L+ VP +F L +L
Sbjct: 187 SLNDNQLKS-VPDGVFDRLTSL 207
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 93/237 (39%), Gaps = 25/237 (10%)
Query: 635 SDTIFPGDCGLQILDLSGNQLQGV-VPKSLANCNMLQVLDLRSNYISDNFPCWLR--NAS 691
D F L LDLS NQ++ + + S N L+ +D SN I L
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174
Query: 692 SLQVLVLRSNNFSGHISCPRNKVSWP----LLQIVDLACN--------KFSGRLSQKWLL 739
+L L +N+ +S K P +L+I+D++ N FS +S+
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI----------KLLKVPNIFTS 789
++++A G+ I+ P + +V+ +++ ++ +
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Query: 790 IDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846
++ + N +L LN+S+N L S+F L ++ +DL N+++
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 241 EKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS-GTLPDS-IGNLENLT 298
E ++P L LDL +++ F L +L L GLS L D NL+ LT
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 299 RVEVSSCNFTG-PIPPSMANLTQLFHMDFSSNHFF 332
R+++S + PS L L +DFSSN F
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXX 422
++QL+NL + L N L PR L L L L N+ ++ LP+
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELR 163
Query: 423 XXGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456
N+L+ VP F +L L TL L +N+ R+
Sbjct: 164 LYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 432 VPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPN 491
+P IF EL+NL TL ++ NK L I + L+ L + NQ+ +P
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQAL--------PIGVFDQLVNLAELRLDRNQLKS-LPP 126
Query: 492 WIWEVGSGNLKFLNLSHNLVVSLQEPY--SISGIRFLDLHSNQLR 534
+++ + L +L+L +N + SL + ++ ++ L L++NQL+
Sbjct: 127 RVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 545 SYVDYSNNNFTSIPADIGNFMSE---TEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601
+ VD + IP DI +E + +++ L G +P V L+L
Sbjct: 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLV-------KLELKR 63
Query: 602 NNLSGTIPACLITKSSSTLEVXXXXXXXXXXXXSDTIFPGDCGLQILDLSGNQLQGVVPK 661
N L+G P +S E+ S+ +F G L+ L+L NQ+ V+P
Sbjct: 64 NQLTGIEPN-AFEGASHIQELQLGENKIKEI--SNKMFLGLHQLKTLNLYDNQISCVMPG 120
Query: 662 SLANCNMLQVLDLRSNYISDN-----FPCWLRNAS 691
S + N L L+L SN + N F WLR S
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 155
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 79/202 (39%), Gaps = 18/202 (8%)
Query: 212 LSSGTEFLAHLTNLKALDLSE--------CGLQGKFPEKILHVPTLETLDLSINQLLQGS 263
L GT L L NL+ LDLS C LQ K ++ L+ L+LS N+ L
Sbjct: 338 LDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLK------NLRHLQYLNLSYNEPLGLE 391
Query: 264 LPNFPKNSSLRDLILSHTGLSGTLPDS-IGNLENLTRVEVSSCNFTGPIPPSMANLTQLF 322
F + L L ++ T L P S NL L + +S C +A L L
Sbjct: 392 DQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLR 451
Query: 323 HMDFSSNHFF-GPI--PSLHKXXXXXXXXXXXXXXXGGISSTFWEQLLNLQIVVLGHNSL 379
H++ N F G I +L + I + L N+ + L HNSL
Sbjct: 452 HLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
Query: 380 SGSIPRSLFLLPNLEMLQLSNN 401
+G +L L L + SNN
Sbjct: 512 TGDSMDALSHLKGLYLNMASNN 533
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 246 VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVS-S 304
+PTL+ LDLS N LL N P+ L +L L H + + L+NLT
Sbjct: 300 IPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358
Query: 305 CN-----FTGPIPPSMANLTQLFHMDFSSNH 330
CN F P++ + Q +D+ H
Sbjct: 359 CNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 461 SKPRAIPILKNQSQ-LSVLDISDNQISGEVPNWIWEVGS-GNLKFLNLSHNLVVSLQEPY 518
SK I + K+ SQ ++L+IS N IS W ++ S L+ L +SHN + L
Sbjct: 8 SKNGLIHVPKDLSQKTTILNISQNYISEL---WTSDILSLSKLRILIISHNRIQYL---- 60
Query: 519 SISGIRF------LDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP--ADIGNFMSETEY 570
IS +F LDL N+L + + N ++D S N F ++P + GN MS+ ++
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGN-MSQLKF 119
Query: 571 FYFVAANNSLAGVIP 585
+ + V+P
Sbjct: 120 LGLSTTHLEKSSVLP 134
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 783 VPNIFTSIDFSSNNFEGPIPVEM---GRFRSLYALNMSHNALTGSIPSSFGNLKEIESLD 839
+ IF++++ + G V M + L+ S+N LT ++ + G+L E+E+L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 840 LSMNNL 845
L MN L
Sbjct: 355 LQMNQL 360
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 246 VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVS-S 304
+PTL+ LDLS N LL N P+ L +L L H + + L+NLT
Sbjct: 294 IPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352
Query: 305 CN-----FTGPIPPSMANLTQLFHMDFSSNH 330
CN F P++ + Q +D+ H
Sbjct: 353 CNSLRALFRNVARPAVDDADQHCKIDYQLEH 383
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 23/193 (11%)
Query: 437 FFELRNLYTLDLSSNKFSRL------------KLASSKPRAIPILKN-QSQLSVLDISDN 483
F L++LY L L +NK S++ KL SK + I N S L L I DN
Sbjct: 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133
Query: 484 QISGEVPNWIWEVGSGNLKFLNLSHN-LVVSLQEPYSISGIR--FLDLHSNQLRGNIPYM 540
+I +VP ++ G N+ + + N L S EP + G++ +L + +L G IP
Sbjct: 134 RIR-KVPKGVFS-GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKD 190
Query: 541 SPNT-SYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDL 599
P T + + +N +I ++ + + ++ + +N + + S+ + L L
Sbjct: 191 LPETLNELHLDHNKIQAI--ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
Query: 600 SNNNLSGTIPACL 612
NN LS +PA L
Sbjct: 249 DNNKLS-RVPAGL 260
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 540 MSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDL 599
+SP+T+ +D NN+ + + D +F + V NN ++ + ++ Q L +
Sbjct: 52 ISPDTTLLDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109
Query: 600 SNNNLSGTIP 609
S N+L P
Sbjct: 110 SKNHLVEIPP 119
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 171 LSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEF-----LAHLTNL 225
LS LQ LSL G LS PI + LAK+ +L +RL+ + G S +EF L+ + L
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL--VRLNLS-GCSGFSEFALQTLLSSCSRL 170
Query: 226 KALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDL 276
L+LS C F EK + V + +I QL +L + KN DL
Sbjct: 171 DELNLSWC---FDFTEKHVQVAVAHVSE-TITQL---NLSGYRKNLQKSDL 214
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 456 LKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQ 515
L L ++K I +L ++L L + DNQIS VP G L+ L LS N + L+
Sbjct: 136 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDLR 191
Query: 516 EPYSISGIRFLDL 528
+++G++ LD+
Sbjct: 192 ---ALAGLKNLDV 201
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 452 KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV 511
+ L L ++K I +L ++L L + DNQIS VP G L+ L LS N +
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHI 190
Query: 512 VSLQEPYSISGIRFLDL 528
L+ +++G++ LD+
Sbjct: 191 SDLR---ALAGLKNLDV 204
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 365 QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIXXXXXXXXXXXXXX 424
+L NL ++L HN L+ + +PNL L LS+N L E
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLY 120
Query: 425 GNRLEGPVPISIFFELRNLYTLDLSSNKFSR-----LKLASSKPRAIPILKNQSQLSVLD 479
N + V + F ++ L L LS N+ SR +K + P+ + + + ++L L
Sbjct: 121 NNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Query: 480 ISDNQISGEVPNWI 493
++D Q ++P W+
Sbjct: 180 LTDLQ---KLPAWV 190
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 154 HLDRVDLSASGTEWCKALSF--LPNLQVLSLSGCDLSGPI-NHYLAKSRSLSVIRLHYNY 210
H++ VDLS + SF L +LQ L + I N+ SL +++L YN
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 211 GLSSGTEFLAHLTNLKALDLSECGLQG 237
L T L NL+ L L++C L G
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDG 117
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 452 KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV 511
+ L L ++K I +L ++L L + DNQIS VP G L+ L LS N +
Sbjct: 155 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHI 210
Query: 512 VSLQEPYSISGIRFLDL 528
L+ +++G++ LD+
Sbjct: 211 SDLR---ALAGLKNLDV 224
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 452 KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV 511
+ L L ++K I +L ++L L + DNQIS VP G L+ L LS N +
Sbjct: 153 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHI 208
Query: 512 VSLQEPYSISGIRFLDL 528
L+ +++G++ LD+
Sbjct: 209 SDLR---ALAGLKNLDV 222
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 452 KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV 511
+ L L ++K I +L ++L L + DNQIS VP G L+ L LS N +
Sbjct: 133 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHI 188
Query: 512 VSLQEPYSISGIRFLDL 528
L+ +++G++ LD+
Sbjct: 189 SDLR---ALAGLKNLDV 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,664,681
Number of Sequences: 62578
Number of extensions: 976870
Number of successful extensions: 3055
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 2179
Number of HSP's gapped (non-prelim): 525
length of query: 967
length of database: 14,973,337
effective HSP length: 108
effective length of query: 859
effective length of database: 8,214,913
effective search space: 7056610267
effective search space used: 7056610267
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)