Query 046844
Match_columns 967
No_of_seqs 1011 out of 5802
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5E-67 1.1E-71 660.8 48.1 565 16-897 46-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-54 6.3E-59 544.7 43.1 512 272-893 70-584 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-35 2.3E-40 314.5 8.5 316 363-743 145-465 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 1.5E-38 3.3E-43 322.1 -15.8 490 247-846 45-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.4E-34 3E-39 306.1 9.0 366 69-482 80-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 4.1E-37 8.9E-42 311.8 -10.3 474 223-730 45-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 6.3E-36 1.4E-40 333.5 -5.5 482 228-868 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.9E-34 4E-39 321.8 -4.5 458 180-729 3-464 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.6E-31 3.4E-36 284.2 -3.5 368 64-452 4-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 2.4E-30 5.1E-35 275.4 -3.5 364 271-704 7-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 8.3E-25 1.8E-29 222.7 -2.1 222 633-867 264-498 (498)
12 PRK15387 E3 ubiquitin-protein 99.9 2.1E-22 4.6E-27 234.7 17.3 174 475-705 203-376 (788)
13 PRK15387 E3 ubiquitin-protein 99.9 3.5E-22 7.7E-27 232.8 18.3 263 500-876 202-464 (788)
14 PLN03210 Resistant to P. syrin 99.9 2.4E-20 5.2E-25 235.7 26.6 334 41-402 532-880 (1153)
15 PLN03210 Resistant to P. syrin 99.9 5.2E-20 1.1E-24 232.7 27.6 340 358-728 549-904 (1153)
16 KOG4237 Extracellular matrix p 99.9 2.9E-23 6.3E-28 211.5 -2.0 275 177-454 69-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 5.8E-20 1.3E-24 216.2 13.7 118 593-730 242-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.4E-20 1.2E-24 216.5 12.5 202 474-730 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-17 4.6E-22 181.9 5.5 185 72-258 3-204 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-17 2.6E-22 183.8 2.2 257 45-308 2-291 (319)
21 PLN03150 hypothetical protein; 99.7 3.5E-16 7.6E-21 184.3 12.6 118 786-903 419-538 (623)
22 KOG0617 Ras suppressor protein 99.6 3.8E-18 8.3E-23 154.3 -5.7 181 642-874 32-216 (264)
23 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 149.4 -5.2 186 589-853 30-219 (264)
24 KOG0532 Leucine-rich repeat (L 99.3 2.2E-13 4.7E-18 146.3 -3.4 111 588-706 94-204 (722)
25 PLN03150 hypothetical protein; 99.2 2.6E-11 5.7E-16 143.3 9.2 113 718-874 419-532 (623)
26 KOG1909 Ran GTPase-activating 99.2 3.2E-12 7E-17 130.1 0.7 46 114-163 90-135 (382)
27 KOG0532 Leucine-rich repeat (L 99.1 4.5E-12 9.8E-17 136.4 -2.4 174 543-732 76-249 (722)
28 COG4886 Leucine-rich repeat (L 99.1 8.6E-11 1.9E-15 133.1 7.6 200 596-853 97-297 (394)
29 KOG1909 Ran GTPase-activating 99.1 2.8E-11 6.1E-16 123.3 1.6 243 41-307 30-310 (382)
30 COG4886 Leucine-rich repeat (L 99.0 2.4E-10 5.2E-15 129.5 7.2 188 589-832 113-300 (394)
31 PF14580 LRR_9: Leucine-rich r 99.0 1.9E-10 4.2E-15 110.7 4.6 128 590-724 17-147 (175)
32 KOG3207 Beta-tubulin folding c 99.0 5.1E-11 1.1E-15 124.7 0.3 87 222-308 196-284 (505)
33 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 122.5 1.8 162 172-333 169-340 (505)
34 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.2E-15 114.9 1.5 134 591-734 283-416 (490)
35 KOG4658 Apoptotic ATPase [Sign 98.9 7.8E-10 1.7E-14 133.3 5.0 180 41-236 545-730 (889)
36 KOG1259 Nischarin, modulator o 98.9 5.1E-10 1.1E-14 111.1 1.6 204 588-873 210-415 (490)
37 PF14580 LRR_9: Leucine-rich r 98.9 2.1E-09 4.6E-14 103.6 5.6 108 619-732 20-128 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.8 3.5E-09 7.6E-14 127.7 3.9 228 41-285 571-808 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 5.2E-09 1.1E-13 82.7 3.3 58 645-702 3-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 7.5E-09 1.6E-13 81.8 3.3 60 619-679 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 2.9E-09 6.3E-14 120.6 0.4 225 588-874 91-322 (414)
42 KOG0531 Protein phosphatase 1, 98.7 2.5E-09 5.4E-14 121.2 -0.7 218 590-870 70-290 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.9E-09 4.1E-14 107.3 -3.7 186 68-282 186-374 (419)
44 KOG2120 SCF ubiquitin ligase, 98.5 9.5E-09 2.1E-13 102.4 -2.9 236 29-306 125-374 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.2 2.6E-07 5.5E-12 91.2 0.6 36 90-125 90-129 (388)
46 KOG1859 Leucine-rich repeat pr 98.2 5.6E-08 1.2E-12 108.1 -6.1 80 644-730 165-245 (1096)
47 KOG4341 F-box protein containi 98.2 1.3E-07 2.9E-12 99.0 -3.3 280 67-354 138-438 (483)
48 KOG4579 Leucine-rich repeat (L 98.2 7.6E-08 1.6E-12 85.0 -4.6 89 785-876 77-165 (177)
49 COG5238 RNA1 Ran GTPase-activa 98.1 1.7E-06 3.6E-11 85.6 3.4 113 245-357 155-287 (388)
50 KOG1859 Leucine-rich repeat pr 98.1 7E-08 1.5E-12 107.3 -8.1 127 594-730 166-292 (1096)
51 KOG2982 Uncharacterized conser 98.0 2.5E-06 5.5E-11 85.5 2.4 68 143-211 66-133 (418)
52 KOG4341 F-box protein containi 97.9 1.5E-06 3.4E-11 91.3 -2.1 296 92-398 138-459 (483)
53 KOG3665 ZYG-1-like serine/thre 97.8 2.9E-05 6.4E-10 91.8 5.8 109 116-235 122-232 (699)
54 KOG2982 Uncharacterized conser 97.7 3.2E-06 6.9E-11 84.8 -2.1 157 315-486 93-262 (418)
55 PF12799 LRR_4: Leucine Rich r 97.7 1.9E-05 4.1E-10 56.9 2.3 36 810-846 2-37 (44)
56 KOG1644 U2-associated snRNP A' 97.7 5.5E-05 1.2E-09 72.2 6.0 107 619-728 43-151 (233)
57 PRK15386 type III secretion pr 97.7 0.00015 3.3E-09 78.8 9.3 56 469-531 48-104 (426)
58 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.6E-10 55.2 3.1 36 644-680 2-37 (44)
59 KOG4579 Leucine-rich repeat (L 97.6 2.6E-06 5.6E-11 75.6 -3.8 112 590-707 51-162 (177)
60 KOG3665 ZYG-1-like serine/thre 97.6 4.3E-05 9.3E-10 90.5 3.6 150 92-253 122-281 (699)
61 KOG1644 U2-associated snRNP A' 97.4 0.00037 8E-09 66.7 7.1 86 642-730 41-126 (233)
62 PRK15386 type III secretion pr 97.4 0.00045 9.9E-09 75.2 8.4 74 641-729 50-124 (426)
63 PF08263 LRRNT_2: Leucine rich 96.9 0.0005 1.1E-08 49.4 2.1 21 16-38 21-43 (43)
64 KOG1947 Leucine rich repeat pr 96.9 0.00034 7.3E-09 81.9 1.5 14 390-403 426-439 (482)
65 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.4E-08 66.4 3.0 59 65-126 41-101 (260)
66 PF13306 LRR_5: Leucine rich r 96.7 0.0041 8.8E-08 57.7 6.6 105 588-700 8-112 (129)
67 PF13306 LRR_5: Leucine rich r 96.6 0.0043 9.4E-08 57.5 6.4 83 218-304 30-112 (129)
68 KOG2123 Uncharacterized conser 96.3 0.00029 6.2E-09 70.5 -3.7 37 66-105 18-54 (388)
69 KOG2739 Leucine-rich acidic nu 96.2 0.0037 8.1E-08 62.8 3.1 60 619-681 44-105 (260)
70 KOG1947 Leucine rich repeat pr 96.1 0.0026 5.7E-08 74.3 2.4 239 65-331 186-439 (482)
71 PF00560 LRR_1: Leucine Rich R 95.7 0.0031 6.7E-08 37.7 0.1 12 835-846 2-13 (22)
72 KOG2123 Uncharacterized conser 95.7 0.00031 6.8E-09 70.2 -6.7 82 619-705 20-102 (388)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.0043 9.3E-08 37.1 0.6 22 810-832 1-22 (22)
74 KOG4308 LRR-containing protein 93.8 0.001 2.2E-08 75.5 -9.7 73 139-211 106-184 (478)
75 KOG0473 Leucine-rich repeat pr 91.9 0.0066 1.4E-07 59.5 -5.7 80 41-126 42-121 (326)
76 KOG4308 LRR-containing protein 91.8 0.0059 1.3E-07 69.4 -7.3 191 67-261 87-304 (478)
77 KOG0473 Leucine-rich repeat pr 90.4 0.011 2.4E-07 57.9 -5.8 83 784-869 41-123 (326)
78 PF13504 LRR_7: Leucine rich r 88.3 0.28 6E-06 27.1 1.1 13 93-105 2-14 (17)
79 PF13516 LRR_6: Leucine Rich r 86.5 0.29 6.2E-06 29.9 0.6 22 666-687 1-22 (24)
80 smart00369 LRR_TYP Leucine-ric 85.9 0.68 1.5E-05 28.8 2.1 20 667-686 2-21 (26)
81 smart00370 LRR Leucine-rich re 85.9 0.68 1.5E-05 28.8 2.1 20 667-686 2-21 (26)
82 smart00370 LRR Leucine-rich re 84.8 0.69 1.5E-05 28.8 1.8 14 833-846 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 84.8 0.69 1.5E-05 28.8 1.8 14 833-846 2-15 (26)
84 KOG3864 Uncharacterized conser 84.0 0.31 6.7E-06 47.4 -0.1 38 93-130 102-139 (221)
85 PF13516 LRR_6: Leucine Rich r 83.6 0.23 5E-06 30.3 -0.8 16 833-848 2-17 (24)
86 KOG3864 Uncharacterized conser 82.1 0.25 5.4E-06 48.0 -1.5 32 247-278 151-183 (221)
87 KOG4242 Predicted myosin-I-bin 75.1 10 0.00022 42.0 7.7 60 272-331 215-280 (553)
88 smart00365 LRR_SD22 Leucine-ri 69.6 3.8 8.3E-05 25.6 1.8 15 667-681 2-16 (26)
89 PF08693 SKG6: Transmembrane a 62.8 6.8 0.00015 27.2 2.1 8 927-934 16-23 (40)
90 smart00364 LRR_BAC Leucine-ric 62.0 5.6 0.00012 24.8 1.4 18 542-559 2-19 (26)
91 PF01102 Glycophorin_A: Glycop 60.4 5.5 0.00012 35.8 1.8 27 924-950 65-91 (122)
92 PF04478 Mid2: Mid2 like cell 57.8 6.2 0.00013 36.6 1.7 22 924-945 50-71 (154)
93 smart00368 LRR_RI Leucine rich 56.2 9.2 0.0002 24.3 1.8 13 810-822 3-15 (28)
94 PTZ00382 Variant-specific surf 50.6 7.4 0.00016 33.5 1.0 24 924-947 67-90 (96)
95 PF02439 Adeno_E3_CR2: Adenovi 50.5 14 0.0003 25.3 2.0 20 926-945 6-25 (38)
96 smart00367 LRR_CC Leucine-rich 46.4 17 0.00037 22.5 1.9 16 115-130 1-16 (26)
97 KOG3763 mRNA export factor TAP 43.6 13 0.00028 42.2 1.7 68 438-512 215-283 (585)
98 KOG3763 mRNA export factor TAP 43.2 12 0.00025 42.5 1.3 64 473-536 218-285 (585)
99 TIGR00864 PCC polycystin catio 41.4 17 0.00036 49.6 2.5 30 713-742 15-44 (2740)
100 PF12606 RELT: Tumour necrosis 37.1 20 0.00044 26.4 1.3 27 933-959 9-35 (50)
101 PF01034 Syndecan: Syndecan do 32.0 13 0.00029 28.7 -0.3 23 925-947 11-33 (64)
102 PF08093 Toxin_23: Magi 5 toxi 30.1 45 0.00098 21.3 1.8 19 17-35 3-21 (30)
103 PF08374 Protocadherin: Protoc 29.6 30 0.00065 34.1 1.5 12 924-935 39-50 (221)
104 PRK10132 hypothetical protein; 28.2 38 0.00082 29.9 1.8 20 927-946 87-106 (108)
105 PF15176 LRR19-TM: Leucine-ric 27.1 1.5E+02 0.0032 25.6 4.9 9 928-936 19-27 (102)
106 PF05808 Podoplanin: Podoplani 25.8 23 0.00049 33.3 0.0 26 924-949 130-155 (162)
107 PF14986 DUF4514: Domain of un 24.9 1.6E+02 0.0036 21.7 4.1 28 921-948 18-45 (61)
108 TIGR00864 PCC polycystin catio 23.3 49 0.0011 45.5 2.3 33 649-681 1-33 (2740)
109 PF03302 VSP: Giardia variant- 23.0 48 0.001 37.2 1.9 24 924-947 368-391 (397)
110 PHA03265 envelope glycoprotein 22.5 67 0.0015 34.2 2.6 29 924-952 348-376 (402)
111 PRK10404 hypothetical protein; 21.8 59 0.0013 28.3 1.8 19 927-945 81-99 (101)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5e-67 Score=660.77 Aligned_cols=565 Identities=35% Similarity=0.564 Sum_probs=378.4
Q ss_pred CCcCCCCCCCCCCCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCcccc-CCCCC
Q 046844 16 TKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLG-NLTNL 94 (967)
Q Consensus 16 ~~l~~w~~~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L 94 (967)
..+++| ..+.|||.|.||+|+..++|+.|+|+++.+.|.+ ++.+..+++|++|+|++|.+.+. +|..+. .+++|
T Consensus 46 ~~~~~w--~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L 120 (968)
T PLN00113 46 KYLSNW--NSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSL 120 (968)
T ss_pred ccCCCC--CCCCCCCcCcceecCCCCcEEEEEecCCCccccC--ChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCC
Confidence 468899 6678999999999987789999999999998877 67888999999999999998876 886654 88999
Q ss_pred CEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCC
Q 046844 95 TYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFL 174 (967)
Q Consensus 95 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l 174 (967)
++|+|++|.+.+.+|. +.+++|++|++++
T Consensus 121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~------------------------------------------------- 149 (968)
T PLN00113 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSN------------------------------------------------- 149 (968)
T ss_pred CEEECcCCccccccCc--cccCCCCEEECcC-------------------------------------------------
Confidence 9999999988877774 3455555555554
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEec
Q 046844 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDL 254 (967)
Q Consensus 175 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (967)
|.+.+..|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 150 ----------n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 150 ----------NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred ----------CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 3333344444555555555555555555555555666666666666666666555555555555555544
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCcccccc
Q 046844 255 SINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP 334 (967)
Q Consensus 255 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 334 (967)
++|. +.+.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.
T Consensus 220 ~~n~------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 220 GYNN------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCc------------------------cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 4443 3344555566666666666666666666666666666666666666655443
Q ss_pred CccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccC
Q 046844 335 IPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVS 414 (967)
Q Consensus 335 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 414 (967)
+| .. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+
T Consensus 276 ~p-----------------------~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~------- 324 (968)
T PLN00113 276 IP-----------------------PS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI------- 324 (968)
T ss_pred Cc-----------------------hh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-------
Confidence 33 22 334445555555555555555555555566666665555544321
Q ss_pred CCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchh
Q 046844 415 SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494 (967)
Q Consensus 415 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~ 494 (967)
|..+ ..++ +|+.|++++|.+++.+|..+
T Consensus 325 ------------------~~~~-~~l~--------------------------------~L~~L~L~~n~l~~~~p~~l- 352 (968)
T PLN00113 325 ------------------PVAL-TSLP--------------------------------RLQVLQLWSNKFSGEIPKNL- 352 (968)
T ss_pred ------------------ChhH-hcCC--------------------------------CCCEEECcCCCCcCcCChHH-
Confidence 1111 2222 23333333333333333222
Q ss_pred ccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeee
Q 046844 495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFV 574 (967)
Q Consensus 495 ~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~ 574 (967)
T Consensus 353 -------------------------------------------------------------------------------- 352 (968)
T PLN00113 353 -------------------------------------------------------------------------------- 352 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844 575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654 (967)
Q Consensus 575 l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 654 (967)
..+++|+.|++++|++++.+|..+.... +|+.|++++|++.+.+|.. +..+++|+.|++++|+
T Consensus 353 --------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 353 --------------GKHNNLTVLDLSTNNLTGEIPEGLCSSG--NLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNS 415 (968)
T ss_pred --------------hCCCCCcEEECCCCeeEeeCChhHhCcC--CCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCE
Confidence 1222333333333333333333333222 3444444444444444443 4445555555555555
Q ss_pred cCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844 655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS 734 (967)
Q Consensus 655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p 734 (967)
+++.+|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.|.+ |..+ ..++|+.||+++|+++|.+|
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccC
Confidence 55555556666666666666666666666666666666666666666666654 4433 34678888888888888777
Q ss_pred HHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEE
Q 046844 735 QKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL 814 (967)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L 814 (967)
..+. .++.|+.|+|++|+++|.+|.+++.+++|++|
T Consensus 493 ~~~~--------------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 493 RKLG--------------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred hhhh--------------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 5431 35568889999999999999999999999999
Q ss_pred ECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCC
Q 046844 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLY 894 (967)
Q Consensus 815 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc 894 (967)
+|++|.++|.+|..|+++++|+.|||++|+++|.+|..+.+++.|+.+++++|+++|.+|...++.++...+|.||+++|
T Consensus 529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC 608 (968)
T ss_pred ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 046844 895 GPP 897 (967)
Q Consensus 895 g~~ 897 (967)
|.+
T Consensus 609 ~~~ 611 (968)
T PLN00113 609 GGD 611 (968)
T ss_pred CCc
Confidence 864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-54 Score=544.65 Aligned_cols=512 Identities=34% Similarity=0.510 Sum_probs=406.6
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccc-CCCCCcEEEccCccccccCccccccCcccEEECC
Q 046844 272 SLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMA-NLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLS 350 (967)
Q Consensus 272 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 350 (967)
.++.|++++|.+.+.++..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+++.+|. ...++|++|+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls 148 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS 148 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence 566677777777777777777777888888888777776766544 777788888887777766664 234578888888
Q ss_pred CCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCC
Q 046844 351 FNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG 430 (967)
Q Consensus 351 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 430 (967)
+|.+.+.+|.. ++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|.. ...+.+|+.|++++|.+.+
T Consensus 149 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCC
Confidence 88887777766 777888888888888887777888888888888888888777655542 2245666666666666666
Q ss_pred CCChhhhccCCCCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc
Q 046844 431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509 (967)
Q Consensus 431 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n 509 (967)
.+|..+ ..+++|++|++++|+++ +.+|. +.++++|++|++++|++++.+|..+..
T Consensus 227 ~~p~~l-~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-------------- 282 (968)
T PLN00113 227 EIPYEI-GGLTSLNHLDLVYNNLT---------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-------------- 282 (968)
T ss_pred cCChhH-hcCCCCCEEECcCceec---------cccChhHhCCCCCCEEECcCCeeeccCchhHhh--------------
Confidence 666655 66777777777777665 33444 666667777777777776666655543
Q ss_pred cccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhh
Q 046844 510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC 589 (967)
Q Consensus 510 ~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~ 589 (967)
+++|+.|++++|.+.+.+|.... .+..++. |++++|.+.+.+|..++
T Consensus 283 ----------l~~L~~L~Ls~n~l~~~~p~~~~---------------------~l~~L~~--L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 283 ----------LQKLISLDLSDNSLSGEIPELVI---------------------QLQNLEI--LHLFSNNFTGKIPVALT 329 (968)
T ss_pred ----------ccCcCEEECcCCeeccCCChhHc---------------------CCCCCcE--EECCCCccCCcCChhHh
Confidence 23455666666665555443211 1223333 66677777777888888
Q ss_pred cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
.+++|+.|++++|.+++.+|..+.... +|+.|++++|++++.+|.. +..+.+|+.|++++|++.+.+|..+..+++|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCC--CCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 999999999999999999999887776 9999999999999999988 8888999999999999999999999999999
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCC
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG 749 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~ 749 (967)
+.|++++|++++..|..|.++++|+.|++++|++++.+ |..+..+++|+.|++++|++.|.+|..+
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~p~~~------------ 472 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGGLPDSF------------ 472 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCceeeeecCccc------------
Confidence 99999999999999999999999999999999999987 8888899999999999999998888432
Q ss_pred cccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccc
Q 046844 750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSF 829 (967)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 829 (967)
....|+.||+++|+++|.+|..++.++.|+.|+|++|+++|.+|..+
T Consensus 473 ---------------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 473 ---------------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred ---------------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence 23568899999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCC-cCCccCCCccCCCCCC
Q 046844 830 GNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYEGNKGL 893 (967)
Q Consensus 830 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~-~~~~~~~~~~~gn~~l 893 (967)
+++++|++|||++|+++|.+|..+.+++.|+.||+++|+++|.+|... .+..+......+|+..
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 999999999999999999999999999999999999999999999753 2233334445566533
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=314.50 Aligned_cols=316 Identities=24% Similarity=0.279 Sum_probs=207.8
Q ss_pred hhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCC
Q 046844 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN 442 (967)
Q Consensus 363 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~ 442 (967)
+..++.|+.|||+.|.++..-...|..-.++++|+|++|+|+..- ...+..+.+|..|.++.|+++ .+|...|.++++
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPK 222 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchheeeecccCccc-ccCHHHhhhcch
Confidence 444555555555555554333334444445555555555554321 112223345555555555555 667777777777
Q ss_pred CCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCC--CCC
Q 046844 443 LYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP--YSI 520 (967)
Q Consensus 443 L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~--~~~ 520 (967)
|+.|+|..|+|..++.- .|..+++|+.|.+..|.|.......|+.+ .+++.|+|+.|+++.+... +.+
T Consensus 223 L~~LdLnrN~irive~l--------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l--~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGL--------TFQGLPSLQNLKLQRNDISKLDDGAFYGL--EKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred hhhhhccccceeeehhh--------hhcCchhhhhhhhhhcCcccccCcceeee--cccceeecccchhhhhhccccccc
Confidence 77777777776643221 16667777777777777765555555433 3466666666665554322 224
Q ss_pred CCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcc
Q 046844 521 SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600 (967)
Q Consensus 521 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls 600 (967)
+.|+.|++|+|.| ....++++..+.+|++|+||
T Consensus 293 t~L~~L~lS~NaI-----------------------------------------------~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 293 TSLEQLDLSYNAI-----------------------------------------------QRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred chhhhhccchhhh-----------------------------------------------heeecchhhhcccceeEecc
Confidence 4444444444433 33334455567788888888
Q ss_pred cCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc---ccccCCCCCCEEECCCC
Q 046844 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP---KSLANCNMLQVLDLRSN 677 (967)
Q Consensus 601 ~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N 677 (967)
+|+++..-++.+..+. .|++|+|++|.+. .+.+.+|.++++|+.|||++|.|+..+. ..|.++++|+.|++.+|
T Consensus 326 ~N~i~~l~~~sf~~L~--~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLS--QLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred ccccccCChhHHHHHH--HhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 8888855555665555 7888888888887 7777778888888888888888886554 35778888888888888
Q ss_pred ccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844 678 YISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV 743 (967)
Q Consensus 678 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 743 (967)
+|..+...+|.++++|+.|+|.+|.|.... |..|..+ .|+.|-+..-.|-+.+...|+..|+.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq--~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQ--PNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeec--ccccccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence 888888888888888999999888887766 7788888 88888888888888888888866554
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=322.10 Aligned_cols=490 Identities=24% Similarity=0.310 Sum_probs=238.0
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc
Q 046844 247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDF 326 (967)
Q Consensus 247 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 326 (967)
..|+.+.+++|.+.. ..+.+..+..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.+..+.+|++++.
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 445566666665422 2233444556666666666665 45555666666666666666665 45556666666666666
Q ss_pred cCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccc
Q 046844 327 SSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ 406 (967)
Q Consensus 327 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 406 (967)
++|.+....+....+..++.++..+|+++ ..|+. +..+.+|..+++.+|++....|..+ +++.|++||...|-+.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccc-cCchH-HHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh--
Confidence 66666555555555555666666666655 34444 4555556666666666553332222 3555555555555554
Q ss_pred cccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccC
Q 046844 407 LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS 486 (967)
Q Consensus 407 ~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~ 486 (967)
.+|..+ +.+.+|+.|++..|++. .+|.|..|..|+++.++.|+|.
T Consensus 197 ------------------------tlP~~l-g~l~~L~~LyL~~Nki~----------~lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 197 ------------------------TLPPEL-GGLESLELLYLRRNKIR----------FLPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred ------------------------cCChhh-cchhhhHHHHhhhcccc----------cCCCCCccHHHHHHHhcccHHH
Confidence 444444 55555555555555443 2333455555555555555554
Q ss_pred CCCCcchhccCCCCcceeecccccccCcCCCCC-CCCccEEeCCCCCCCCCCCCCC-CCCceeeccCCcCCCCCcchhcc
Q 046844 487 GEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYS-ISGIRFLDLHSNQLRGNIPYMS-PNTSYVDYSNNNFTSIPADIGNF 564 (967)
Q Consensus 487 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~ls~n~l~~i~~~~~~~ 564 (967)
.+|..... ..+++..||+.+|+++++|.... +++|++||+|+|.+++..+... -+++.|-+.+|.+..|..++...
T Consensus 242 -~lpae~~~-~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 242 -MLPAEHLK-HLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred -hhHHHHhc-ccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcc
Confidence 33333321 12345555555555555544333 4445555555555554333211 13444444555444333332211
Q ss_pred ccccceeeee--ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCC
Q 046844 565 MSETEYFYFV--AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD 642 (967)
Q Consensus 565 ~~~l~~~~l~--l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l 642 (967)
-+..-..|+. +..-.++..-. ..-..-+. ..+..|.... ..+.+.|++++-+++ .+|+.+|...
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~------~~e~~~t~----~~~~~~~~~~---~i~tkiL~~s~~qlt-~VPdEVfea~ 385 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEG------GTETAMTL----PSESFPDIYA---IITTKILDVSDKQLT-LVPDEVFEAA 385 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcc------cccccCCC----CCCcccchhh---hhhhhhhcccccccc-cCCHHHHHHh
Confidence 1100000010 00000000000 00000000 0001111100 013444445554444 4444434321
Q ss_pred C--cccEEeCCCCccCCCCcccccCCCCCCE-EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCC
Q 046844 643 C--GLQILDLSGNQLQGVVPKSLANCNMLQV-LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLL 719 (967)
Q Consensus 643 ~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L 719 (967)
. -....+++.|++. .+|..+..++.+.+ +++++|.++ -+|..+..+++|..|+|++|.+... |..++.+..|
T Consensus 386 ~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~L---P~e~~~lv~L 460 (565)
T KOG0472|consen 386 KSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDL---PEEMGSLVRL 460 (565)
T ss_pred hhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhc---chhhhhhhhh
Confidence 1 1444555555555 34444444443333 333444333 3555666666666666666666544 6666666667
Q ss_pred cEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC
Q 046844 720 QIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG 799 (967)
Q Consensus 720 ~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g 799 (967)
+.||+|.|+|. .+|..+. .+..+..+-.++|++..
T Consensus 461 q~LnlS~NrFr-~lP~~~y--------------------------------------------~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLY--------------------------------------------ELQTLETLLASNNQIGS 495 (565)
T ss_pred heecccccccc-cchHHHh--------------------------------------------hHHHHHHHHhccccccc
Confidence 77777777664 2343331 01112222234455544
Q ss_pred CCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc
Q 046844 800 PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846 (967)
Q Consensus 800 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 846 (967)
.-|..+++|.+|.+|||.+|.+. .||..+|+|++|++|++++|.|+
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 44444777777777777777776 67777777777777777777776
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=306.10 Aligned_cols=366 Identities=24% Similarity=0.257 Sum_probs=294.9
Q ss_pred CCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCC
Q 046844 69 LQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLT 148 (967)
Q Consensus 69 L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~ 148 (967)
-+.||+++|.+... -+..|.++++|+.+++.+|.++ .+|...+...+|++|+|.+|
T Consensus 80 t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N---------------------- 135 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN---------------------- 135 (873)
T ss_pred eeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc----------------------
Confidence 45578888877755 4566777888888888877777 77774444555666666654
Q ss_pred CCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEE
Q 046844 149 ELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKAL 228 (967)
Q Consensus 149 ~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 228 (967)
.|+.+. .+.+..+|.|+.||||.|.|+......|..-.++++|+|++|.++..-...|.++.+|..|
T Consensus 136 ----------~I~sv~---se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 136 ----------LISSVT---SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ----------cccccc---HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 333332 2456678889999999998888777788888899999999999998888889999999999
Q ss_pred eccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCC
Q 046844 229 DLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT 308 (967)
Q Consensus 229 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 308 (967)
.|+.|+++...+..|.++++|+.|+|..|++.....-.|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 99999999777778888999999999999988777788999999999999999999777788999999999999999999
Q ss_pred CCCCccccCCCCCcEEEccCccccccCc-cccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhc
Q 046844 309 GPIPPSMANLTQLFHMDFSSNHFFGPIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSL 387 (967)
Q Consensus 309 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 387 (967)
..-..++.++++|+.|++++|.+...-+ .|....+|++|+|++|+++. +++..+..+..|++|.|++|.++..-...|
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 7777889999999999999999976544 45555699999999999984 444448999999999999999987777788
Q ss_pred cCCCCCCEEeCcCCcCcccccc--ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCcc
Q 046844 388 FLLPNLEMLQLSNNQFENQLPE--ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRA 465 (967)
Q Consensus 388 ~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ 465 (967)
..+.+|++|||++|.+...+.+ ..+.++++|+.|++.+|++. .||...|.+++.|++|+|.+|.|..+....
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nA----- 435 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNA----- 435 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccc-----
Confidence 8899999999999998866543 33446788888888888887 788888888888888888888887665443
Q ss_pred CCCCCCCCCccEEECcC
Q 046844 466 IPILKNQSQLSVLDISD 482 (967)
Q Consensus 466 ip~l~~~~~L~~L~Ls~ 482 (967)
|..+ .|++|.+..
T Consensus 436 ---Fe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 436 ---FEPM-ELKELVMNS 448 (873)
T ss_pred ---cccc-hhhhhhhcc
Confidence 4444 566665543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.1e-37 Score=311.75 Aligned_cols=474 Identities=27% Similarity=0.342 Sum_probs=365.2
Q ss_pred CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302 (967)
Q Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 302 (967)
..|+.+.+++|.+. .+.+.+.++..|.+|++++|++.+ ..+++..+..++.++.++|++. .+|..++.+.+|..+++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 44566666666665 334445666666666666665432 2234445666667777777776 77888889999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC
Q 046844 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS 382 (967)
Q Consensus 303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 382 (967)
++|.+. .+|+.++.+..|+.++..+|++....++...+.++..+++.+|++. ..|+..+. ++.|++++...|.++ .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-c
Confidence 999988 6777888889999999999999887777777778999999999998 44555244 999999999999887 7
Q ss_pred cChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCC
Q 046844 383 IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSK 462 (967)
Q Consensus 383 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 462 (967)
+|+.++.+.+|..|++..|++. .+|+ +.+++.|+++++..|++. .+|.....+++++..||+.+|+++.++..
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde--- 270 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE--- 270 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH---
Confidence 8999999999999999999997 4554 346888999999999998 88888877999999999999999754332
Q ss_pred CccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCC-C------CCCccE----EeCCCC
Q 046844 463 PRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPY-S------ISGIRF----LDLHSN 531 (967)
Q Consensus 463 ~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~-~------~~~L~~----L~Ls~n 531 (967)
+.-+.+|++||+|+|.|+ ..|..++.+ .|+.|.+.+|.+..+.... . ++.|+. =.++.-
T Consensus 271 ------~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 271 ------ICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred ------HHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 666788999999999998 556555554 5899999999887652211 0 222221 011111
Q ss_pred CC----CCC-CCCCC------CCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcE-EEc
Q 046844 532 QL----RGN-IPYMS------PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQV-LDL 599 (967)
Q Consensus 532 ~l----~~~-~~~~~------~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~-L~L 599 (967)
+= .+. .+..+ .+.+.|++++-+++.+|.+++.....--....+++.|++. .+|..+..+..+.+ +++
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL 419 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence 00 011 11111 2678899999999999999887655544556899999987 56777766666544 556
Q ss_pred ccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcc
Q 046844 600 SNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI 679 (967)
Q Consensus 600 s~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 679 (967)
++|.++ -+|..+...+ +|..|+|++|-+. .+|.. ++.+..||.|+++.|++. .+|.....+..|+.+-.++|++
T Consensus 420 snn~is-fv~~~l~~l~--kLt~L~L~NN~Ln-~LP~e-~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 420 SNNKIS-FVPLELSQLQ--KLTFLDLSNNLLN-DLPEE-MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred hcCccc-cchHHHHhhh--cceeeecccchhh-hcchh-hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence 666664 7888887766 9999999999998 89998 888889999999999998 7888888888899999999999
Q ss_pred ccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844 680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730 (967)
Q Consensus 680 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~ 730 (967)
....|+.+.++.+|..|||.+|.+... |..++++.+|+.|++.+|+|.
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~I---Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQI---PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhC---ChhhccccceeEEEecCCccC
Confidence 998888899999999999999998754 999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-36 Score=333.50 Aligned_cols=482 Identities=29% Similarity=0.380 Sum_probs=262.0
Q ss_pred EeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCC
Q 046844 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF 307 (967)
Q Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 307 (967)
+|++.+.+. .+|..+..-..++.|++..|-+...+.+...+.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455666665 55655555555777777777655444444444445666666666665 5566666666666666666666
Q ss_pred CCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhc
Q 046844 308 TGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSL 387 (967)
Q Consensus 308 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 387 (967)
. ..|....++.+|+++.|.+|.+. ..|.. +..+.+|++|+++.|++. .+|..+
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~------------------------~lP~~-~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ------------------------SLPAS-ISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh------------------------cCchh-HHhhhcccccccchhccC-CCchhH
Confidence 5 44555555666666666555554 33333 455555555555555554 455555
Q ss_pred cCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCC
Q 046844 388 FLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIP 467 (967)
Q Consensus 388 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip 467 (967)
..++.++.+..++|.....++. ..++.+++..|.+.+.++.++ ..+.. .|+|.+|.+..++
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~~~d---------- 194 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEMEVLD---------- 194 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcch-hhhhe--eeecccchhhhhh----------
Confidence 5555555666665521111111 115555666665555555554 44443 5777777665322
Q ss_pred CCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCC-CCCCce
Q 046844 468 ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYM-SPNTSY 546 (967)
Q Consensus 468 ~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~ 546 (967)
+..+.+|+.+..+.|+++... ...++++ .|+.++|.++...+.. +.++++
T Consensus 195 -ls~~~~l~~l~c~rn~ls~l~------~~g~~l~----------------------~L~a~~n~l~~~~~~p~p~nl~~ 245 (1081)
T KOG0618|consen 195 -LSNLANLEVLHCERNQLSELE------ISGPSLT----------------------ALYADHNPLTTLDVHPVPLNLQY 245 (1081)
T ss_pred -hhhccchhhhhhhhcccceEE------ecCcchh----------------------eeeeccCcceeecccccccccee
Confidence 445566666666666654211 1112344 4444444444322222 234555
Q ss_pred eeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECC
Q 046844 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626 (967)
Q Consensus 547 L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls 626 (967)
+++++|+++.+| ++++.+.+|+.++..+|+++ .+|..+...+ +|+.|.+.
T Consensus 246 ~dis~n~l~~lp---------------------------~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~--~L~~l~~~ 295 (1081)
T KOG0618|consen 246 LDISHNNLSNLP---------------------------EWIGACANLEALNANHNRLV-ALPLRISRIT--SLVSLSAA 295 (1081)
T ss_pred eecchhhhhcch---------------------------HHHHhcccceEecccchhHH-hhHHHHhhhh--hHHHHHhh
Confidence 555555555554 34455566666666666664 5555555444 56666666
Q ss_pred CCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC-CCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844 627 RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM-LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705 (967)
Q Consensus 627 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 705 (967)
+|.+. .+|.. ..+...|++|+|..|+|....+..|.-... |+.|+.+.|++....--.=...+.|+.|++.+|++++
T Consensus 296 ~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 296 YNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhh-hCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 66665 45554 444566666666666665433333333332 5555566666554321111124556666666666665
Q ss_pred ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCC
Q 046844 706 HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN 785 (967)
Q Consensus 706 ~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (967)
.. -..+..+.+|++|+|++|++. ++|...+ ..+.
T Consensus 374 ~c--~p~l~~~~hLKVLhLsyNrL~-~fpas~~-------------------------------------------~kle 407 (1081)
T KOG0618|consen 374 SC--FPVLVNFKHLKVLHLSYNRLN-SFPASKL-------------------------------------------RKLE 407 (1081)
T ss_pred cc--hhhhccccceeeeeecccccc-cCCHHHH-------------------------------------------hchH
Confidence 43 445556666666666666653 3443332 1234
Q ss_pred cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccccc-CCccccCCCCCCeEEc
Q 046844 786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK-IPAQLASLNFLSVLNL 864 (967)
Q Consensus 786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~l~l 864 (967)
.|+.|+||+|+++ .+|+++..++.|++|..-.|++. ..| .+.++++|+.+|+|.|+|+-. +|.... -+.|++||+
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdl 483 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDL 483 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeec
Confidence 4566666666665 55666666666666666666666 445 566666666666666666533 222221 256666666
Q ss_pred cCCc
Q 046844 865 SYNN 868 (967)
Q Consensus 865 s~N~ 868 (967)
++|.
T Consensus 484 SGN~ 487 (1081)
T KOG0618|consen 484 SGNT 487 (1081)
T ss_pred cCCc
Confidence 6664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-34 Score=321.80 Aligned_cols=458 Identities=28% Similarity=0.381 Sum_probs=261.1
Q ss_pred EEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCC
Q 046844 180 LSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQL 259 (967)
Q Consensus 180 L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 259 (967)
+|++++.+.- +|..+-.-..++.|+++.|.+.....+...+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLEL-IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCcc-cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 4455555543 4444444445777888888766655555556666888888888887 6788888888888888888876
Q ss_pred CCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCcccc
Q 046844 260 LQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLH 339 (967)
Q Consensus 260 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 339 (967)
...+ .....+.+|+++.|..|.+. ..|..+..+.+|+.|++++|++. .+|..+..++.+..+..++|......+.
T Consensus 81 ~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 81 RSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred hhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 5444 33445667777777777665 66777777777777777777776 5666666677777777766622211111
Q ss_pred ccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCccc
Q 046844 340 KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLF 419 (967)
Q Consensus 340 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 419 (967)
..++.+++..|.+.+.++.. +..++. .|+|.+|.+. ...+.++++|+.+....|++..
T Consensus 156 --~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~-------------- 213 (1081)
T KOG0618|consen 156 --TSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSE-------------- 213 (1081)
T ss_pred --ccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccce--------------
Confidence 12455555555555544443 333333 4555555554 1223444455555444444431
Q ss_pred EEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCC
Q 046844 420 DLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSG 499 (967)
Q Consensus 420 ~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 499 (967)
+. ..-++|+.|+.++|.++.+... .--.+|+++|+++|+++ .+|+|+..+ .
T Consensus 214 ------------l~----~~g~~l~~L~a~~n~l~~~~~~----------p~p~nl~~~dis~n~l~-~lp~wi~~~--~ 264 (1081)
T KOG0618|consen 214 ------------LE----ISGPSLTALYADHNPLTTLDVH----------PVPLNLQYLDISHNNLS-NLPEWIGAC--A 264 (1081)
T ss_pred ------------EE----ecCcchheeeeccCcceeeccc----------cccccceeeecchhhhh-cchHHHHhc--c
Confidence 11 2335666666666666533211 11246778888888877 455776554 4
Q ss_pred CcceeecccccccCcCCCC-CCCCccEEeCCCCCCCCCCCCC--CCCCceeeccCCcCCCCCcchhccccccceeeeeec
Q 046844 500 NLKFLNLSHNLVVSLQEPY-SISGIRFLDLHSNQLRGNIPYM--SPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAA 576 (967)
Q Consensus 500 ~L~~L~Ls~n~l~~l~~~~-~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~ 576 (967)
+|+.+++.+|.++.++... ...+|+.+.+..|.++-..|.. ...+++|++..|++..+|+.+..
T Consensus 265 nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~------------- 331 (1081)
T KOG0618|consen 265 NLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA------------- 331 (1081)
T ss_pred cceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh-------------
Confidence 5777777777776665432 3556666666666665544432 23455555555555555542211
Q ss_pred CCcccccCChhhhcC-CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCcc
Q 046844 577 NNSLAGVIPESVCKA-TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655 (967)
Q Consensus 577 ~n~l~~~~p~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 655 (967)
.. .+|..|..+.|++. ..|. ........|+.|++.+|.+++..-.. +.+...|++|+|++|++
T Consensus 332 -------------v~~~~l~~ln~s~n~l~-~lp~-~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 332 -------------VLNASLNTLNVSSNKLS-TLPS-YEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred -------------hhhHHHHHHhhhhcccc-cccc-ccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeeccccc
Confidence 01 12455555556554 3332 22112225666666666665443332 45555666666666666
Q ss_pred CCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccC
Q 046844 656 QGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKF 729 (967)
Q Consensus 656 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l 729 (967)
.......+.++..|+.|+||+|+++. +|..+.++..|++|...+|++... | .+..+++|+++|+|.|.+
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~f---P-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSF---P-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeec---h-hhhhcCcceEEecccchh
Confidence 64444455566666666666666654 445666666666666666665533 4 455555555555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-31 Score=284.24 Aligned_cols=368 Identities=28% Similarity=0.374 Sum_probs=297.2
Q ss_pred cCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHH
Q 046844 64 FDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLF 143 (967)
Q Consensus 64 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~ 143 (967)
+-|+..|-.|+++|.++|..+|..+..++.++.|.|....+. .+|+.++.|.+|+||.+++|+.. .+...
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~---------~vhGE 73 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI---------SVHGE 73 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH---------hhhhh
Confidence 445667778888888887678888888888888888888777 78888888888888888875432 33444
Q ss_pred hcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCC
Q 046844 144 LQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLT 223 (967)
Q Consensus 144 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 223 (967)
+..++.||.+.++.|++...+ .+..+-.+..|+.||||+|++.. .|..+..-+++.+|+|++|.+....-..|-+++
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsG--iP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSG--IPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hccchhhHHHhhhccccccCC--CCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 677788888888888776543 35667788899999999998875 677788888999999999998877667788999
Q ss_pred CCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCC-CCccccccCCCCCCEEEc
Q 046844 224 NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS-GTLPDSIGNLENLTRVEV 302 (967)
Q Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L 302 (967)
.|-.||||+|++. .+|..+..+.+|++|+|++|.+....+..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+
T Consensus 151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 9999999999998 67777889999999999999987777777888889999999886543 367888999999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCC-
Q 046844 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG- 381 (967)
Q Consensus 303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~- 381 (967)
|.|++. ..|+.+.++++|+.|+|++|.++..-.......+|++|+++.|+++ .+|.. +..+++|+.|.+.+|+++-
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCccccc
Confidence 999998 7899999999999999999999865444444458999999999998 67777 7889999999999998763
Q ss_pred CcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCc
Q 046844 382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNK 452 (967)
Q Consensus 382 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~ 452 (967)
-+|..++.+.+|+.+...+|.+. .+|+ ....|..|+.|.++.|.+. .+|..+ .-++.|+.||+..|.
T Consensus 307 GiPSGIGKL~~Levf~aanN~LE-lVPE-glcRC~kL~kL~L~~NrLi-TLPeaI-HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLE-LVPE-GLCRCVKLQKLKLDHNRLI-TLPEAI-HLLPDLKVLDLRENP 373 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccc-cCch-hhhhhHHHHHhccccccee-echhhh-hhcCCcceeeccCCc
Confidence 47889999999999999998886 3443 2335677888888888776 677777 778888888888775
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.4e-30 Score=275.37 Aligned_cols=364 Identities=27% Similarity=0.403 Sum_probs=235.1
Q ss_pred CCCCEEEccCCCCC-CCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEEC
Q 046844 271 SSLRDLILSHTGLS-GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDL 349 (967)
Q Consensus 271 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L 349 (967)
+-.+-.++++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++....-....++.|+.+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 33444555555555 355666666666666666666655 5566666666666666666666544444444556666666
Q ss_pred CCCCCCC-CCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcC
Q 046844 350 SFNNLSG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRL 428 (967)
Q Consensus 350 ~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 428 (967)
..|++.. .||.. +-.+..|+.|+|++|++. ..|..+....++-.|+|++|+|. .+|.-.+..+..|-.||+++|++
T Consensus 86 R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 6665542 34444 455666666666666665 45666666666666666666665 23333334455555556666665
Q ss_pred CCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccC-CCCCcchhccCCCCcceeecc
Q 046844 429 EGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQIS-GEVPNWIWEVGSGNLKFLNLS 507 (967)
Q Consensus 429 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~L~~L~Ls 507 (967)
. .+|+.+ ..+..|++|.|++|.+....+. . +..+++|+.|.+++.+=+ ..+|..+..+ .+|..+|+|
T Consensus 163 e-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLr-----Q---LPsmtsL~vLhms~TqRTl~N~Ptsld~l--~NL~dvDlS 230 (1255)
T KOG0444|consen 163 E-MLPPQI-RRLSMLQTLKLSNNPLNHFQLR-----Q---LPSMTSLSVLHMSNTQRTLDNIPTSLDDL--HNLRDVDLS 230 (1255)
T ss_pred h-hcCHHH-HHHhhhhhhhcCCChhhHHHHh-----c---CccchhhhhhhcccccchhhcCCCchhhh--hhhhhcccc
Confidence 5 666666 6777777888888776644332 1 344556777777765433 3455554433 346666666
Q ss_pred cccccCcCCCC-CCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCCh
Q 046844 508 HNLVVSLQEPY-SISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE 586 (967)
Q Consensus 508 ~n~l~~l~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~ 586 (967)
+|.+..+|+.. .+++|+.|+||+|+|+ ++..
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~it---------------------eL~~--------------------------- 262 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKIT---------------------ELNM--------------------------- 262 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCcee---------------------eeec---------------------------
Confidence 66666655432 2455555555555444 2211
Q ss_pred hhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCc-ccCCCCCCCCCCcccEEeCCCCccCCCCcccccC
Q 046844 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLN-GTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLAN 665 (967)
Q Consensus 587 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~-~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 665 (967)
......+|++|++|.|+++ .+|.+++.++ .|+.|++.+|+++ .-||.. ++.+.+|+++..++|++. ..|+.+..
T Consensus 263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~--kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~LE-lVPEglcR 337 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLT-VLPDAVCKLT--KLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNKLE-LVPEGLCR 337 (1255)
T ss_pred cHHHHhhhhhhccccchhc-cchHHHhhhH--HHHHHHhccCcccccCCccc-hhhhhhhHHHHhhccccc-cCchhhhh
Confidence 1223457888999999998 8898888776 8999999999876 247777 788888999999998888 77888999
Q ss_pred CCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccc
Q 046844 666 CNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFS 704 (967)
Q Consensus 666 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 704 (967)
|..|+.|.|+.|++.. .|+.+.-++.|++|+++.|+=-
T Consensus 338 C~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 338 CVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 9999999999998875 7888888899999999988643
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=8.3e-25 Score=222.68 Aligned_cols=222 Identities=23% Similarity=0.258 Sum_probs=147.2
Q ss_pred cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC
Q 046844 633 TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN 712 (967)
Q Consensus 633 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~ 712 (967)
.-|...|..+++|+.|+|++|+|+++-+.+|.+...++.|.|..|+|..+....|.++..|+.|+|.+|+|+... |..
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~a 341 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGA 341 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe--ccc
Confidence 556555888888888888888888888888888888999999999888887888888999999999999998877 888
Q ss_pred CCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcc-cc----cccccCCCCceeeEEEEEEEcccee-e---ecc-
Q 046844 713 KVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE-VN----HLGIEMPSNQFYEVRVTVTVKGIEI-K---LLK- 782 (967)
Q Consensus 713 ~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~- 782 (967)
|..+..|..|.+-.|+|.+.+-..|+..|+......+.. .. ..++++..-.+...+ ..+.+- . -..
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~----c~~~ee~~~~~s~~c 417 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFR----CGGPEELGCLTSSPC 417 (498)
T ss_pred ccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccc----cCCccccCCCCCCCC
Confidence 888899999999999999999888887777654322110 00 001111000000000 000000 0 000
Q ss_pred --cCCcc-eEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCC
Q 046844 783 --VPNIF-TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFL 859 (967)
Q Consensus 783 --~~~~l-~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 859 (967)
..+-+ +...-|++.+. .+|..+- ..-..|+|.+|.++ .+|.+ .+++| .+|+|+|+++-.--..|++|+.|
T Consensus 418 P~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql 490 (498)
T KOG4237|consen 418 PPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQL 490 (498)
T ss_pred CCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhh
Confidence 01112 12223444333 4443332 13456778888887 67776 66777 88888888887777778888888
Q ss_pred CeEEccCC
Q 046844 860 SVLNLSYN 867 (967)
Q Consensus 860 ~~l~ls~N 867 (967)
.+|-+|||
T Consensus 491 ~tlilsyn 498 (498)
T KOG4237|consen 491 STLILSYN 498 (498)
T ss_pred heeEEecC
Confidence 88888876
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=2.1e-22 Score=234.71 Aligned_cols=174 Identities=24% Similarity=0.327 Sum_probs=82.5
Q ss_pred ccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcC
Q 046844 475 LSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNF 554 (967)
Q Consensus 475 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l 554 (967)
-..|+++++.++ .+|..+. ++++.|++++|+++.+|.. +++|++|++++|+++.. |..+++++.|++++|.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcc-cCcccccceeeccCCch
Confidence 445566666665 4454432 2455566666655555432 34555555555555532 33334445555555544
Q ss_pred CCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccC
Q 046844 555 TSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTL 634 (967)
Q Consensus 555 ~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~i 634 (967)
+.+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+
T Consensus 275 ~~Lp~l------------------------------p~~L~~L~Ls~N~Lt-~LP~~-----p~~L~~LdLS~N~L~-~L 317 (788)
T PRK15387 275 THLPAL------------------------------PSGLCKLWIFGNQLT-SLPVL-----PPGLQELSVSDNQLA-SL 317 (788)
T ss_pred hhhhhc------------------------------hhhcCEEECcCCccc-ccccc-----ccccceeECCCCccc-cC
Confidence 443320 123445555555555 34431 115555555555555 34
Q ss_pred CCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844 635 SDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705 (967)
Q Consensus 635 p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 705 (967)
|.. . .+|+.|++++|++++ +|.. ..+|+.|+|++|+|++ +|.. .++|+.|++++|++++
T Consensus 318 p~l-p---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 318 PAL-P---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred CCC-c---ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc
Confidence 432 1 235555555555553 2321 1345555555555554 2221 2344455555555543
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=3.5e-22 Score=232.82 Aligned_cols=263 Identities=27% Similarity=0.314 Sum_probs=194.0
Q ss_pred CcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCc
Q 046844 500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS 579 (967)
Q Consensus 500 ~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~ 579 (967)
.-..|++++|.++.+|.... ++++.|++.+|+++. +|..+++|++|++++|+++.+|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~-------------------- 259 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV-------------------- 259 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccC--------------------
Confidence 34566666666666655332 356666666666654 33344555555555555554432
Q ss_pred ccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCC
Q 046844 580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVV 659 (967)
Q Consensus 580 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 659 (967)
. .++|+.|++++|.++ .+|... .+|+.|++++|+++ .+|.. .++|+.|++++|++++.
T Consensus 260 -------l---p~sL~~L~Ls~N~L~-~Lp~lp-----~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~L- 317 (788)
T PRK15387 260 -------L---PPGLLELSIFSNPLT-HLPALP-----SGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL- 317 (788)
T ss_pred -------c---ccccceeeccCCchh-hhhhch-----hhcCEEECcCCccc-ccccc----ccccceeECCCCccccC-
Confidence 1 257889999999987 566532 27999999999998 67753 36899999999999964
Q ss_pred cccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHH
Q 046844 660 PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL 739 (967)
Q Consensus 660 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~ 739 (967)
|.. ..+|+.|++++|++++ +|.. ..+|+.|+|++|+|++. |.. .++|+.|++++|++++ +|.
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L~~-LP~---- 379 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA---- 379 (788)
T ss_pred CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC---CCC---Ccccceehhhcccccc-Ccc----
Confidence 432 2468889999999987 4532 25899999999999975 432 2567889999999874 441
Q ss_pred HHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC
Q 046844 740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN 819 (967)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N 819 (967)
.+..|+.|++++|+|++ +|... +.|+.|++|+|
T Consensus 380 -------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N 412 (788)
T PRK15387 380 -------------------------------------------LPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGN 412 (788)
T ss_pred -------------------------------------------cccccceEEecCCcccC-CCCcc---cCCCEEEccCC
Confidence 12357889999999995 66543 57999999999
Q ss_pred CCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844 820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 820 ~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 876 (967)
+|++ +|... .+|+.|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|..
T Consensus 413 ~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 413 RLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred cCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 9995 78653 46788999999998 78999999999999999999999998864
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.4e-20 Score=235.74 Aligned_cols=334 Identities=21% Similarity=0.265 Sum_probs=241.4
Q ss_pred CcEEEEECCCCCccc-ccCCCCCCcCCCCCCeeeCCCCCCCC-----CCCCccccCCC-CCCEEeCCCCCCCccCChhcc
Q 046844 41 GHVIGLDLSWEPIIG-GLENATGLFDLQYLQSLNLGFTLFKG-----FQIPSRLGNLT-NLTYLNLSQGGFAGEIPTEIS 113 (967)
Q Consensus 41 ~~v~~L~L~~~~l~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~l~~l~-~L~~L~Ls~~~~~~~lp~~l~ 113 (967)
.+|+.+.+.-..+.. .+ ...++..+++|++|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+
T Consensus 532 ~~v~~i~l~~~~~~~~~i-~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHI-HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred ceeeEEEeccCccceeee-cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 355555544333321 12 13467889999999997653221 13677777664 6999999998877 888877
Q ss_pred CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCcc-CCCcchhHHHHhcCCCCccEEEccCCCCCCCCc
Q 046844 114 SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVD-LSASGTEWCKALSFLPNLQVLSLSGCDLSGPIN 192 (967)
Q Consensus 114 ~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~ 192 (967)
...+|++|+++++. +..++..+..+++|+.|+++++. +... ..+..+++|++|++++|.....+|
T Consensus 609 ~~~~L~~L~L~~s~---------l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i-----p~ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 609 RPENLVKLQMQGSK---------LEKLWDGVHSLTGLRNIDLRGSKNLKEI-----PDLSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred CccCCcEEECcCcc---------ccccccccccCCCCCEEECCCCCCcCcC-----CccccCCcccEEEecCCCCccccc
Confidence 57899999999853 33445557789999999998764 3322 246778999999999987777788
Q ss_pred ccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCC
Q 046844 193 HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSS 272 (967)
Q Consensus 193 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 272 (967)
..+..+++|+.|++++|.....+|..+ ++++|++|++++|...+.+|.. .++|++|++++|.+.. +|....+++
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~~l~~ 748 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNLRLEN 748 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--ccccccccc
Confidence 889999999999999887767777655 7889999999998766566643 4678899999887643 344345778
Q ss_pred CCEEEccCCCCC-------CCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCccc
Q 046844 273 LRDLILSHTGLS-------GTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLN 345 (967)
Q Consensus 273 L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~ 345 (967)
|++|.+.++... ...+......++|+.|++++|.....+|..++++++|+.|++++|...+.+|....+.+|+
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~ 828 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLE 828 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccC
Confidence 888888764322 1112223345788999999988777888888899999999998887666667666666888
Q ss_pred EEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCc
Q 046844 346 NLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQ 402 (967)
Q Consensus 346 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 402 (967)
.|++++|.....+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|.
T Consensus 829 ~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred EEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 8888888665555432 467888888888887 567788888888888887754
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=5.2e-20 Score=232.73 Aligned_cols=340 Identities=21% Similarity=0.273 Sum_probs=264.0
Q ss_pred CChhhhhcccCccEEEcCCCcC------CCCcChhccCCC-CCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCC
Q 046844 358 ISSTFWEQLLNLQIVVLGHNSL------SGSIPRSLFLLP-NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG 430 (967)
Q Consensus 358 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 430 (967)
+....|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+......+ ...+|+.|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccc-
Confidence 3444478899999998876532 334566676664 6999999998886443332 4578999999999887
Q ss_pred CCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc-
Q 046844 431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN- 509 (967)
Q Consensus 431 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n- 509 (967)
.++..+ ..+++|+.|+++++... ..+|.+..+++|+.|++++|.....+|..+... ++|+.|++++|
T Consensus 625 ~L~~~~-~~l~~Lk~L~Ls~~~~l---------~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L--~~L~~L~L~~c~ 692 (1153)
T PLN03210 625 KLWDGV-HSLTGLRNIDLRGSKNL---------KEIPDLSMATNLETLKLSDCSSLVELPSSIQYL--NKLEDLDMSRCE 692 (1153)
T ss_pred cccccc-ccCCCCCEEECCCCCCc---------CcCCccccCCcccEEEecCCCCccccchhhhcc--CCCCEEeCCCCC
Confidence 677665 78999999999987532 456667888999999999987767888877654 46999999986
Q ss_pred cccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcc-------cc
Q 046844 510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL-------AG 582 (967)
Q Consensus 510 ~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l-------~~ 582 (967)
.++.+|....+++|+.|++++|...+.+|....++++|++++|.++.+|..+ .+..+.. |.+.++.. ..
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~--L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--RLENLDE--LILCEMKSEKLWERVQP 768 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc--ccccccc--ccccccchhhccccccc
Confidence 5777887777899999999999888888877889999999999999998754 2344444 55554321 11
Q ss_pred cCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCccc
Q 046844 583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662 (967)
Q Consensus 583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~ 662 (967)
..+......++|+.|++++|...+.+|..+..+. +|+.|++++|...+.+|.. . .+++|+.|++++|.....+|..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~--~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH--KLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCC--CCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccccc
Confidence 2222233457899999999988888999888776 9999999998766688886 3 6899999999998766566653
Q ss_pred ccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC-CccceecCCCCCCCCCCCCcEEecCCcc
Q 046844 663 LANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS-NNFSGHISCPRNKVSWPLLQIVDLACNK 728 (967)
Q Consensus 663 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~p~~~~~l~~L~~Ldls~N~ 728 (967)
.++|+.|+|++|.++. +|.++..+++|+.|++++ |++.+ + |..+..+++|+.+++++|.
T Consensus 845 ---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~-l--~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR-V--SLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc-c--CcccccccCCCeeecCCCc
Confidence 3689999999999986 788999999999999999 45554 3 7778889999999999885
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.9e-23 Score=211.53 Aligned_cols=275 Identities=17% Similarity=0.096 Sum_probs=154.4
Q ss_pred ccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccC-CCCCCccchhccCCCCCCEEecc
Q 046844 177 LQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSE-CGLQGKFPEKILHVPTLETLDLS 255 (967)
Q Consensus 177 L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~ 255 (967)
-.++.|..|.|+.+.+..|..+++|+.|||++|.++.+.|.+|.++++|.+|-+.+ |+|+......|+++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 44455555555555555555555555555555555555555555555555444433 55554444455555555555555
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCC------------CCCCccccCCCCCcE
Q 046844 256 INQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT------------GPIPPSMANLTQLFH 323 (967)
Q Consensus 256 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------------~~~~~~l~~l~~L~~ 323 (967)
-|++.......|..++++..|.+.+|.+...-...|..+..++.+.+..|.+. ...|..++...-..-
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 55544444444444555555555555544222224555555555555544421 011111222222222
Q ss_pred EEccCccccccCccccccCcccEE---ECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcC
Q 046844 324 MDFSSNHFFGPIPSLHKSRNLNNL---DLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSN 400 (967)
Q Consensus 324 L~L~~n~l~~~~~~~~~~~~L~~L---~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 400 (967)
..+.+.++...-+.-+.. .++.+ -.+.+...+..|...|..+++|++|++++|++++.-+.+|.....+++|.|..
T Consensus 229 ~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 222222222111111111 22222 22344455677888888999999999999999988888999999999999999
Q ss_pred CcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCccc
Q 046844 401 NQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFS 454 (967)
Q Consensus 401 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~ 454 (967)
|++. .+....+..+..|+.|++.+|+|+ .+....|..+.+|.+|.+-.|.+.
T Consensus 308 N~l~-~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLE-FVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHH-HHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCccc
Confidence 9886 344445556777888888888887 444455677777888877777653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=5.8e-20 Score=216.20 Aligned_cols=118 Identities=27% Similarity=0.456 Sum_probs=53.6
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
+|+.|++++|++. .+|..+. . +|+.|++++|+++ .+|.. +. .+|+.|++++|++++ +|..+. ++|+.|
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s--~L~~L~Ls~N~L~-~LP~~-l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L 309 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--S--ALQSLDLFHNKIS-CLPEN-LP--EELRYLSVYDNSIRT-LPAHLP--SGITHL 309 (754)
T ss_pred cccEEECcCCccC-cCChhHh--C--CCCEEECcCCccC-ccccc-cC--CCCcEEECCCCcccc-Ccccch--hhHHHH
Confidence 4555555555554 4444432 1 4555555555555 44544 21 245555555555553 232221 245555
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~ 730 (967)
++++|+++. +|..+ .++|+.|++++|.+++. |..+. ++|+.|++++|+++
T Consensus 310 ~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~L---P~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 310 NVQSNSLTA-LPETL--PPGLKTLEAGENALTSL---PASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred HhcCCcccc-CCccc--cccceeccccCCccccC---Chhhc--CcccEEECCCCCCC
Confidence 555555543 22222 13455555555554432 32221 34444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=5.4e-20 Score=216.47 Aligned_cols=202 Identities=26% Similarity=0.371 Sum_probs=117.4
Q ss_pred CccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCc
Q 046844 474 QLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN 553 (967)
Q Consensus 474 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~ 553 (967)
+...|++++++++ .+|..+. +.++.|++++|+++.+|... .++|+.|++++|+++......+..++.|++++|.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence 4567777777776 4554432 34677777777776665433 2466666666666654332233455555555555
Q ss_pred CCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc
Q 046844 554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT 633 (967)
Q Consensus 554 l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ 633 (967)
++.+|. .+. ++|+.|++++|+++ .+|..+. . +|+.|++++|+++ .
T Consensus 253 L~~LP~---------------------------~l~--s~L~~L~Ls~N~L~-~LP~~l~--~--sL~~L~Ls~N~Lt-~ 297 (754)
T PRK15370 253 ITELPE---------------------------RLP--SALQSLDLFHNKIS-CLPENLP--E--ELRYLSVYDNSIR-T 297 (754)
T ss_pred cCcCCh---------------------------hHh--CCCCEEECcCCccC-ccccccC--C--CCcEEECCCCccc-c
Confidence 555543 332 35666666666666 4555442 1 6667777777666 4
Q ss_pred CCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC
Q 046844 634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713 (967)
Q Consensus 634 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~ 713 (967)
+|.. +. .+|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+|+.. |..+
T Consensus 298 LP~~-lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L---P~~l 365 (754)
T PRK15370 298 LPAH-LP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL---PETL 365 (754)
T ss_pred Cccc-ch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC---Chhh
Confidence 5544 22 356667777777664 34333 2466777777777665 444442 5677777777776632 4433
Q ss_pred CCCCCCcEEecCCccCc
Q 046844 714 VSWPLLQIVDLACNKFS 730 (967)
Q Consensus 714 ~~l~~L~~Ldls~N~l~ 730 (967)
. +.|+.|++++|+++
T Consensus 366 p--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 366 P--PTITTLDVSRNALT 380 (754)
T ss_pred c--CCcCEEECCCCcCC
Confidence 2 46777777777766
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=2.1e-17 Score=181.94 Aligned_cols=185 Identities=24% Similarity=0.181 Sum_probs=72.8
Q ss_pred eeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCcc----CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCC
Q 046844 72 LNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGE----IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL 147 (967)
Q Consensus 72 L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l 147 (967)
|+|..+.+++...+..+..+.+|++|+++++.+++. ++..+...+.|++|+++++..-. .......++..+.++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR--IPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC--cchHHHHHHHHHHhc
Confidence 344444444333334444444455555555544321 33333444445555554431110 001112222334444
Q ss_pred CCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCC----CcccccCC-CCCCEEEccCCCCCCc----chhh
Q 046844 148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKS-RSLSVIRLHYNYGLSS----GTEF 218 (967)
Q Consensus 148 ~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l-~~L~~L~L~~n~~~~~----~~~~ 218 (967)
++|++|+++++.+..........+...++|++|++++|.+++. +...+..+ ++|+.|++++|.+.+. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 4555555544444322222222211113355555555544421 11223333 4444444444444421 1223
Q ss_pred hcCCCCCCEEeccCCCCCCc----cchhccCCCCCCEEeccCCC
Q 046844 219 LAHLTNLKALDLSECGLQGK----FPEKILHVPTLETLDLSINQ 258 (967)
Q Consensus 219 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 258 (967)
+..+++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 34444555555555554421 12223333444555544444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.2e-17 Score=183.83 Aligned_cols=257 Identities=26% Similarity=0.261 Sum_probs=166.6
Q ss_pred EEECCCCCccc-ccCCCCCCcCCCCCCeeeCCCCCCCCC---CCCccccCCCCCCEEeCCCCCCC------ccCChhccC
Q 046844 45 GLDLSWEPIIG-GLENATGLFDLQYLQSLNLGFTLFKGF---QIPSRLGNLTNLTYLNLSQGGFA------GEIPTEISS 114 (967)
Q Consensus 45 ~L~L~~~~l~g-~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~~~~~------~~lp~~l~~ 114 (967)
.|+|..+.+.+ .+ ...+..+.+|++|+++++.+.+. .++..+...++|++|+++++.+. ..++..+.+
T Consensus 2 ~l~L~~~~l~~~~~--~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERA--TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccch--HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 35666666653 22 33455677788999988887532 25566777788899998888766 224456677
Q ss_pred CCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhH-HHHhcCC-CCccEEEccCCCCCCC--
Q 046844 115 LTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFL-PNLQVLSLSGCDLSGP-- 190 (967)
Q Consensus 115 l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~l-~~L~~L~Ls~~~l~~~-- 190 (967)
+++|++|++++|.... .....+...... ++|++|+++++.+...+..+ ...+..+ ++|++|++++|.+++.
T Consensus 80 ~~~L~~L~l~~~~~~~----~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 80 GCGLQELDLSDNALGP----DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred cCceeEEEccCCCCCh----hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 8899999998864321 111112222333 55999999998887543333 3456677 8999999999998853
Q ss_pred --CcccccCCCCCCEEEccCCCCCCc----chhhhcCCCCCCEEeccCCCCCCc----cchhccCCCCCCEEeccCCCCC
Q 046844 191 --INHYLAKSRSLSVIRLHYNYGLSS----GTEFLAHLTNLKALDLSECGLQGK----FPEKILHVPTLETLDLSINQLL 260 (967)
Q Consensus 191 --~~~~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~ 260 (967)
++..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+. +...+..+++|++|++++|.+.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 334566778899999999988753 334456677999999999988744 3345567788888888888764
Q ss_pred CCCCCCCC-----CCCCCCEEEccCCCCCC----CccccccCCCCCCEEEccCCCCC
Q 046844 261 QGSLPNFP-----KNSSLRDLILSHTGLSG----TLPDSIGNLENLTRVEVSSCNFT 308 (967)
Q Consensus 261 ~~~~~~~~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~ 308 (967)
...+..+. ..+.|++|++++|.++. .+...+..+++|+++++++|.+.
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 32222211 13566666666666652 12233444556666666666665
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.66 E-value=3.5e-16 Score=184.35 Aligned_cols=118 Identities=32% Similarity=0.602 Sum_probs=105.7
Q ss_pred cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEcc
Q 046844 786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 865 (967)
Q Consensus 786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 865 (967)
.++.|+|++|.++|.+|.+++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCc--CCccCCCccCCCCCCCCCCCCCCCC
Q 046844 866 YNNLVGKIPTSTQ--LQSFSPTSYEGNKGLYGPPLTNESQ 903 (967)
Q Consensus 866 ~N~l~g~ip~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~ 903 (967)
+|+++|.+|.... ........+.||+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 1223345688999999977555664
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.8e-18 Score=154.30 Aligned_cols=181 Identities=29% Similarity=0.519 Sum_probs=137.2
Q ss_pred CCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcE
Q 046844 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI 721 (967)
Q Consensus 642 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~ 721 (967)
+.....|.|++|+++ .+|..++.+.+|++|++.+|+|.. .|..++.++.|+.|+++-|++.-. |..++.+|.|++
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~l---prgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNIL---PRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcC---ccccCCCchhhh
Confidence 445566666666666 445566777777777777777765 566777788888888888877644 888888888888
Q ss_pred EecCCccCcC-cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCC
Q 046844 722 VDLACNKFSG-RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGP 800 (967)
Q Consensus 722 Ldls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ 800 (967)
|||++|+++. .+|..+| .+..++.++|+.|.|. .
T Consensus 107 ldltynnl~e~~lpgnff--------------------------------------------~m~tlralyl~dndfe-~ 141 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF--------------------------------------------YMTTLRALYLGDNDFE-I 141 (264)
T ss_pred hhccccccccccCCcchh--------------------------------------------HHHHHHHHHhcCCCcc-c
Confidence 8888888864 3443332 2345677888999986 7
Q ss_pred CcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCC---CeEEccCCccccCCC
Q 046844 801 IPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFL---SVLNLSYNNLVGKIP 874 (967)
Q Consensus 801 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L---~~l~ls~N~l~g~ip 874 (967)
+|..+|++++|+.|-+..|.+- ..|..+|.++.|+.|.+.+|+++ .+|..++++.-+ +++.+.+|....+|-
T Consensus 142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 8888999999999999999987 78999999999999999999998 567777776533 456666777755554
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-17 Score=149.37 Aligned_cols=186 Identities=28% Similarity=0.454 Sum_probs=138.1
Q ss_pred hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668 (967)
Q Consensus 589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 668 (967)
.++..++.|.+|+|+++ .+|..+.... +|+.|++++|++. .+|.. ++.++.|+.|+++-|++. ..|..|+.++.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~--nlevln~~nnqie-~lp~~-issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELK--NLEVLNLSNNQIE-ELPTS-ISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhh--hhhhhhcccchhh-hcChh-hhhchhhhheecchhhhh-cCccccCCCch
Confidence 34567777888888887 6777777766 8888888888887 77777 777888888888888887 67888888888
Q ss_pred CCEEECCCCcccc-ccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccC
Q 046844 669 LQVLDLRSNYISD-NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETK 747 (967)
Q Consensus 669 L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~ 747 (967)
|++|||.+|.+.. ..|..|..++.|+.|+|++|.|.-. |..++++++|++|.+..|.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l---p~dvg~lt~lqil~lrdndl------------------ 162 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL---PPDVGKLTNLQILSLRDNDL------------------ 162 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC---ChhhhhhcceeEEeeccCch------------------
Confidence 8888888887764 4566677777777777777777533 66677777777776666654
Q ss_pred CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCc
Q 046844 748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPS 827 (967)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~ 827 (967)
- ..|.++|.+..|+.|.+.+|+++ .+|.
T Consensus 163 --------------------------------------------------l-~lpkeig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 163 --------------------------------------------------L-SLPKEIGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred --------------------------------------------------h-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence 2 57888999999999999999998 6777
Q ss_pred cccCCCCC---CeEeCcCccccccCCccc
Q 046844 828 SFGNLKEI---ESLDLSMNNLSGKIPAQL 853 (967)
Q Consensus 828 ~~~~l~~L---~~LdLs~N~l~g~ip~~l 853 (967)
.++++.-+ +.+.+.+|-....|.+.+
T Consensus 191 el~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 191 ELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred hhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 77776432 456667777766665554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2.2e-13 Score=146.30 Aligned_cols=111 Identities=29% Similarity=0.416 Sum_probs=58.3
Q ss_pred hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844 588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667 (967)
Q Consensus 588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 667 (967)
++.+..|+.+.+..|.+. .+|.++.... .|+.|||+.|+++ .+|.. +.. --|+.|.+++|+++ .+|..++...
T Consensus 94 ~~~f~~Le~liLy~n~~r-~ip~~i~~L~--~lt~l~ls~NqlS-~lp~~-lC~-lpLkvli~sNNkl~-~lp~~ig~~~ 166 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIR-TIPEAICNLE--ALTFLDLSSNQLS-HLPDG-LCD-LPLKVLIVSNNKLT-SLPEEIGLLP 166 (722)
T ss_pred HHHHHHHHHHHHHhccce-ecchhhhhhh--HHHHhhhccchhh-cCChh-hhc-CcceeEEEecCccc-cCCcccccch
Confidence 333444444555555554 4555554444 4555555555554 44443 221 23555555555555 4455555556
Q ss_pred CCCEEECCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844 668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706 (967)
Q Consensus 668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 706 (967)
.|..||.+.|.+.. +|..++++.+|+.|.++.|++...
T Consensus 167 tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 167 TLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred hHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhhC
Confidence 66666666666654 445566666666666666666543
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=2.6e-11 Score=143.27 Aligned_cols=113 Identities=31% Similarity=0.482 Sum_probs=101.2
Q ss_pred CCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcc
Q 046844 718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNF 797 (967)
Q Consensus 718 ~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l 797 (967)
.++.|+|++|.++|.+|..+. .++.|+.|+|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~--------------------------------------------~L~~L~~L~Ls~N~l 454 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDIS--------------------------------------------KLRHLQSINLSGNSI 454 (623)
T ss_pred EEEEEECCCCCccccCCHHHh--------------------------------------------CCCCCCEEECCCCcc
Confidence 467899999999999997652 467799999999999
Q ss_pred cCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCC-CCCCeEEccCCccccCCC
Q 046844 798 EGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 798 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~l~g~ip 874 (967)
+|.+|..++.++.|+.|||++|+++|.+|+.+++|++|+.|||++|+++|.+|..+..+ ..+..+++++|...+.+|
T Consensus 455 ~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999998874 467889999998655455
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=3.2e-12 Score=130.06 Aligned_cols=46 Identities=30% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCc
Q 046844 114 SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSAS 163 (967)
Q Consensus 114 ~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~ 163 (967)
.+++|++||||.|-.-. ..+..+...+.+++.|++|+|.+|.+...
T Consensus 90 ~~~~L~~ldLSDNA~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGP----KGIRGLEELLSSCTDLEELYLNNCGLGPE 135 (382)
T ss_pred cCCceeEeeccccccCc----cchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence 34455555555532111 22333444455566666666666655443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=4.5e-12 Score=136.36 Aligned_cols=174 Identities=30% Similarity=0.429 Sum_probs=133.7
Q ss_pred CCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccE
Q 046844 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV 622 (967)
Q Consensus 543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~ 622 (967)
.....|++.|++..+|..+..+ ..++. +.+..|.+. .+|..++++..|++|||+.|+++ .+|..++.+ -|+.
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f-~~Le~--liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l---pLkv 147 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAF-VSLES--LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL---PLKV 147 (722)
T ss_pred chhhhhccccccccCchHHHHH-HHHHH--HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC---ccee
Confidence 3456777888888887766542 23333 556666665 56778888888888888888887 788877776 5888
Q ss_pred EECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCc
Q 046844 623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702 (967)
Q Consensus 623 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 702 (967)
|.+++|+++ .+|.. ++.+..|..||.+.|.+. .+|..++++.+|+.|.++.|++.. .|+.+.. -.|..||++.|+
T Consensus 148 li~sNNkl~-~lp~~-ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNk 222 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEE-IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNK 222 (722)
T ss_pred EEEecCccc-cCCcc-cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCc
Confidence 888888887 78887 677888888888888888 667778888888888888888877 4555553 357888888888
Q ss_pred cceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844 703 FSGHISCPRNKVSWPLLQIVDLACNKFSGR 732 (967)
Q Consensus 703 l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~ 732 (967)
++.. |-.+..|+.|++|-|.+|+++..
T Consensus 223 is~i---Pv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 223 ISYL---PVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred eeec---chhhhhhhhheeeeeccCCCCCC
Confidence 8755 88888888888888888888643
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=8.6e-11 Score=133.13 Aligned_cols=200 Identities=33% Similarity=0.443 Sum_probs=116.2
Q ss_pred EEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCC-cccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC-GLQILDLSGNQLQGVVPKSLANCNMLQVLDL 674 (967)
Q Consensus 596 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 674 (967)
.++++.|.+...+... .... .++.|++.+|.++ .||.. ..... +|+.|++++|++. .+|..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~~~~~~-~~~~--~l~~L~l~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNISEL-LELT--NLTSLDLDNNNIT-DIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCchhh-hccc--ceeEEecCCcccc-cCccc-cccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 5666666664333222 2222 6777777777777 56654 33342 7777777777777 34455677777888888
Q ss_pred CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccc
Q 046844 675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNH 754 (967)
Q Consensus 675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~ 754 (967)
++|+++.. |...+..++|+.|++++|+++.. |........|+.+++++|+..-.+. .
T Consensus 171 ~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~~l---~~~~~~~~~L~~l~~~~N~~~~~~~-~------------------ 227 (394)
T COG4886 171 SFNDLSDL-PKLLSNLSNLNNLDLSGNKISDL---PPEIELLSALEELDLSNNSIIELLS-S------------------ 227 (394)
T ss_pred CCchhhhh-hhhhhhhhhhhheeccCCccccC---chhhhhhhhhhhhhhcCCcceecch-h------------------
Confidence 88877763 33334677777777777777654 4444444556666666664211110 0
Q ss_pred ccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCC
Q 046844 755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKE 834 (967)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 834 (967)
.+.+..+..+.+++|++.. +|..++.+..++.|++++|+++ .++. ++.+..
T Consensus 228 --------------------------~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~ 278 (394)
T COG4886 228 --------------------------LSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTN 278 (394)
T ss_pred --------------------------hhhcccccccccCCceeee-ccchhccccccceecccccccc-cccc-ccccCc
Confidence 0122334444455555542 2455666666666666666666 3333 666666
Q ss_pred CCeEeCcCccccccCCccc
Q 046844 835 IESLDLSMNNLSGKIPAQL 853 (967)
Q Consensus 835 L~~LdLs~N~l~g~ip~~l 853 (967)
++.||+++|.++..+|...
T Consensus 279 l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 279 LRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cCEEeccCccccccchhhh
Confidence 6666666666665555443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=2.8e-11 Score=123.33 Aligned_cols=243 Identities=23% Similarity=0.263 Sum_probs=154.7
Q ss_pred CcEEEEECCCCCcccc----cCCCCCCcCCCCCCeeeCCCCCCCCC---CCCcc-------ccCCCCCCEEeCCCCCCCc
Q 046844 41 GHVIGLDLSWEPIIGG----LENATGLFDLQYLQSLNLGFTLFKGF---QIPSR-------LGNLTNLTYLNLSQGGFAG 106 (967)
Q Consensus 41 ~~v~~L~L~~~~l~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~-------l~~l~~L~~L~Ls~~~~~~ 106 (967)
..+++++|+++.+... + ...+.+.+.|+..++|.- ++|. ++|+. +-.+++|++||||+|.|.-
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i--~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAI--AKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred CceEEEeccCCchhHHHHHHH--HHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 5799999999987522 3 345678889999999864 2221 35543 4467899999999999876
Q ss_pred cCChh----ccCCCCCCEEeCCCCCCCcccccccccc------HHHHhcCCCCCCEEEcCCccCCCcc-hhHHHHhcCCC
Q 046844 107 EIPTE----ISSLTRLVTLDLSGIVPIEYSYTVWIAN------LSLFLQNLTELTELHLDRVDLSASG-TEWCKALSFLP 175 (967)
Q Consensus 107 ~lp~~----l~~l~~L~~L~Ls~~~~l~~~~~~~~~~------l~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~l~ 175 (967)
..+.. +..+..|++|.|.+|- +.......+.. ....+..-++||.+...+|++.+.+ ..+...+...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 65543 4678999999999863 32111111111 2233556678999999998887654 44566677788
Q ss_pred CccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCcc----hhhhcCCCCCCEEeccCCCCCCccchhc----
Q 046844 176 NLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSSG----TEFLAHLTNLKALDLSECGLQGKFPEKI---- 243 (967)
Q Consensus 176 ~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---- 243 (967)
.|+.+.++.|.|... ....+..+++|++|||..|.++... ...+..+++|++|++++|.+...-..+|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999988877643 2245667777777777777766443 3344566677777777776654322222
Q ss_pred c-CCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCC
Q 046844 244 L-HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNF 307 (967)
Q Consensus 244 ~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 307 (967)
. ..|.|++|.+.+|.++..... .+..++...+.|+.|+|++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~--------------------~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAAL--------------------ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHH--------------------HHHHHHhcchhhHHhcCCcccc
Confidence 1 245555555555544322111 1222344566777777777766
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.4e-10 Score=129.49 Aligned_cols=188 Identities=30% Similarity=0.354 Sum_probs=144.1
Q ss_pred hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668 (967)
Q Consensus 589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 668 (967)
...+.++.|++.+|.++ .+|....... ++|+.|++++|++. .+|.. ...+++|+.|++++|+++ .+|.....++.
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~-~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLK-SNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccch-hhcccccccccchh-hhhhh-hhccccccccccCCchhh-hhhhhhhhhhh
Confidence 34477899999999998 6666554430 17999999999998 67544 778899999999999999 44555557889
Q ss_pred CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS 748 (967)
Q Consensus 669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~ 748 (967)
|+.|++++|+++. +|........|++|.+++|++... +..+..+..+..+.+++|++... +
T Consensus 188 L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~-~-------------- 248 (394)
T COG4886 188 LNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDL-P-------------- 248 (394)
T ss_pred hhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeec-c--------------
Confidence 9999999999987 455555667799999999964322 66778888888888888887532 1
Q ss_pred CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc
Q 046844 749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS 828 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 828 (967)
.....+..++.|++++|.++..- . ++.+..++.|++++|.++..+|..
T Consensus 249 ------------------------------~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ------------------------------ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ------------------------------chhccccccceeccccccccccc-c-ccccCccCEEeccCccccccchhh
Confidence 01124566899999999998544 3 999999999999999999887776
Q ss_pred ccCC
Q 046844 829 FGNL 832 (967)
Q Consensus 829 ~~~l 832 (967)
...-
T Consensus 297 ~~~~ 300 (394)
T COG4886 297 ALLL 300 (394)
T ss_pred hccc
Confidence 5433
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.9e-10 Score=110.71 Aligned_cols=128 Identities=32% Similarity=0.334 Sum_probs=43.1
Q ss_pred cCCCCcEEEcccCcCCCCCCcccc-cCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844 590 KATNFQVLDLSNNNLSGTIPACLI-TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668 (967)
Q Consensus 590 ~~~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 668 (967)
++..++.|+|++|.|+ .+. .+. .+. +|+.|+|++|.++ .++. +..++.|++|++++|+|+...+.....+++
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~--~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLD--KLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-T--T--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccc-ccc-chhhhhc--CCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 4456788888888886 343 232 223 7888888888887 5553 677788888888888887543322245778
Q ss_pred CCEEECCCCccccccc-hhhhcCCCCCEEEccCCccceecCC-CCCCCCCCCCcEEec
Q 046844 669 LQVLDLRSNYISDNFP-CWLRNASSLQVLVLRSNNFSGHISC-PRNKVSWPLLQIVDL 724 (967)
Q Consensus 669 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~-p~~~~~l~~L~~Ldl 724 (967)
|+.|++++|+|..... ..+..+++|++|+|.+|++...... ...+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888888888765322 4566677888888888877643100 112445667777664
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.1e-11 Score=124.66 Aligned_cols=87 Identities=30% Similarity=0.363 Sum_probs=38.0
Q ss_pred CCCCCEEeccCCCCCCccc-hhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCc-cccccCCCCCCE
Q 046844 222 LTNLKALDLSECGLQGKFP-EKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTL-PDSIGNLENLTR 299 (967)
Q Consensus 222 l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~ 299 (967)
+++|+.|.++.|+++.... .....+|+|+.|+|..|...........-+..|++|+|++|.+...- -...+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 4455555666665552211 12234555555555555321111112222444555555555443211 123344555555
Q ss_pred EEccCCCCC
Q 046844 300 VEVSSCNFT 308 (967)
Q Consensus 300 L~Ls~n~l~ 308 (967)
|+++.+.+.
T Consensus 276 Lnls~tgi~ 284 (505)
T KOG3207|consen 276 LNLSSTGIA 284 (505)
T ss_pred hhccccCcc
Confidence 555555444
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1e-10 Score=122.52 Aligned_cols=162 Identities=23% Similarity=0.190 Sum_probs=75.9
Q ss_pred cCCCCccEEEccCCCCCCCCccc-ccCCCCCCEEEccCCCCCCcchhh-hcCCCCCCEEeccCCCCCCccchhccCCCCC
Q 046844 172 SFLPNLQVLSLSGCDLSGPINHY-LAKSRSLSVIRLHYNYGLSSGTEF-LAHLTNLKALDLSECGLQGKFPEKILHVPTL 249 (967)
Q Consensus 172 ~~l~~L~~L~Ls~~~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (967)
..+|+|+.|+++.|.+....... -..+++|+.|.++.|.++.....+ ...+++|+.|+|..|...........-+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 44444444444444433321111 113445555555555544322222 2345555555555553222222233344555
Q ss_pred CEEeccCCCCCCCC-CCCCCCCCCCCEEEccCCCCCCC-cccc-----ccCCCCCCEEEccCCCCCCC-CCccccCCCCC
Q 046844 250 ETLDLSINQLLQGS-LPNFPKNSSLRDLILSHTGLSGT-LPDS-----IGNLENLTRVEVSSCNFTGP-IPPSMANLTQL 321 (967)
Q Consensus 250 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L 321 (967)
++|||++|++...+ .+....++.|+.|+++.+.+... .|+. ...+++|++|++..|++... .-..+..+++|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 56666655543322 12233455566666665555432 2222 24556777777777766421 11234445666
Q ss_pred cEEEccCccccc
Q 046844 322 FHMDFSSNHFFG 333 (967)
Q Consensus 322 ~~L~L~~n~l~~ 333 (967)
+.|.+..|.+..
T Consensus 329 k~l~~~~n~ln~ 340 (505)
T KOG3207|consen 329 KHLRITLNYLNK 340 (505)
T ss_pred hhhhcccccccc
Confidence 666666666543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.5e-10 Score=114.92 Aligned_cols=134 Identities=28% Similarity=0.281 Sum_probs=104.5
Q ss_pred CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCC
Q 046844 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ 670 (967)
Q Consensus 591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 670 (967)
...|+.+|||+|.|+ .+.++..-.+ .++.|++|+|.+. .+.. +..+++|+.|||++|.++. +..+=..+-+.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~P--kir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAP--KLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK 355 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhcc--ceeEEecccccee-eehh--hhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence 356888999999987 6666665544 8899999999987 5544 6778899999999999883 344445677889
Q ss_pred EEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844 671 VLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS 734 (967)
Q Consensus 671 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p 734 (967)
.|.|++|.|... ..++++-+|..||+++|+|...-. ...++++|-|+.+.|.+|++.+...
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccch
Confidence 999999988653 346778889999999999875422 4678899999999999999987543
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=7.8e-10 Score=133.26 Aligned_cols=180 Identities=24% Similarity=0.346 Sum_probs=104.6
Q ss_pred CcEEEEECCCCC--cccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCC
Q 046844 41 GHVIGLDLSWEP--IIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRL 118 (967)
Q Consensus 41 ~~v~~L~L~~~~--l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L 118 (967)
..++.|=+.++. +. .+ +...+..+++|++|||++|.-.+ ++|+.++.|-+||||+++++.+. .+|..+++|++|
T Consensus 545 ~~L~tLll~~n~~~l~-~i-s~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EI-SGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhh-hc-CHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 346666666654 22 22 02235678888888888764333 48888888888888888888888 888888888888
Q ss_pred CEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCC
Q 046844 119 VTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKS 198 (967)
Q Consensus 119 ~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l 198 (967)
.+|++..+..+. ..+.....|++||+|.+..... ..+......+..+.+|+.+....... .+...+..+
T Consensus 621 ~~Lnl~~~~~l~--------~~~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~ 689 (889)
T KOG4658|consen 621 IYLNLEVTGRLE--------SIPGILLELQSLRVLRLPRSAL-SNDKLLLKELENLEHLENLSITISSV--LLLEDLLGM 689 (889)
T ss_pred heeccccccccc--------cccchhhhcccccEEEeecccc-ccchhhHHhhhcccchhhheeecchh--HhHhhhhhh
Confidence 888888753322 2244466688888888766542 22223344555666666666544332 111112222
Q ss_pred CCCC----EEEccCCCCCCcchhhhcCCCCCCEEeccCCCCC
Q 046844 199 RSLS----VIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ 236 (967)
Q Consensus 199 ~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 236 (967)
+.|. .+.+.++. ....+..++.+.+|+.|.+.+|.+.
T Consensus 690 ~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCc
Confidence 2222 12221211 1222334556666666666666654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=5.1e-10 Score=111.14 Aligned_cols=204 Identities=22% Similarity=0.254 Sum_probs=110.3
Q ss_pred hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC-CccCCCCcccccCC
Q 046844 588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG-NQLQGVVPKSLANC 666 (967)
Q Consensus 588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l 666 (967)
+.-..+|+.+.+|.+.-. .|-..... .+.|+++...+..++ ..|.- .+ ...+..+.-+. .-..|..-......
T Consensus 210 l~~f~~l~~~~~s~~~~~-~i~~~~~~--kptl~t~~v~~s~~~-~~~~l-~p-e~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTE-NIVDIELL--KPTLQTICVHNTTIQ-DVPSL-LP-ETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred hHHhhhhheeeeeccchh-heeceeec--Cchhheeeeeccccc-ccccc-cc-hhhhcCccCCCCCccCCceEEecchH
Confidence 344556777777766532 22221111 226777766665554 22221 11 11111111111 11223333333344
Q ss_pred CCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhccc
Q 046844 667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAET 746 (967)
Q Consensus 667 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~ 746 (967)
..|+++|||+|.|+. +.++..-.+.++.|++++|.+... ..+..+++|+.||||+|.
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~------------------ 340 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNL------------------ 340 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee----hhhhhcccceEeecccch------------------
Confidence 567777777777765 334455566666666666666532 234444555555555554
Q ss_pred CCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCC
Q 046844 747 KSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP 826 (967)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip 826 (967)
++.. -..-..+-++++|+|+.|.+.. -
T Consensus 341 --------------------------------------------------Ls~~-~Gwh~KLGNIKtL~La~N~iE~--L 367 (490)
T KOG1259|consen 341 --------------------------------------------------LAEC-VGWHLKLGNIKTLKLAQNKIET--L 367 (490)
T ss_pred --------------------------------------------------hHhh-hhhHhhhcCEeeeehhhhhHhh--h
Confidence 4321 1122345566778888887752 3
Q ss_pred ccccCCCCCCeEeCcCccccccC-CccccCCCCCCeEEccCCccccCC
Q 046844 827 SSFGNLKEIESLDLSMNNLSGKI-PAQLASLNFLSVLNLSYNNLVGKI 873 (967)
Q Consensus 827 ~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~l~ls~N~l~g~i 873 (967)
+.++.|-+|+.||+++|++...- -..+++++.|+.+.+.+|.++|.+
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 45677778888888888876432 246788888888888888887744
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=2.1e-09 Score=103.57 Aligned_cols=108 Identities=31% Similarity=0.347 Sum_probs=45.3
Q ss_pred CccEEECCCCcCcccCCCCCCC-CCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEE
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFP-GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLV 697 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 697 (967)
.+++|+|++|.|+ .|.. ++ .+.+|+.|+|++|.|+.. +.+..++.|++|++++|+|+.+.+.....+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 7899999999998 6653 44 578999999999999965 3588899999999999999986443335799999999
Q ss_pred ccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844 698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR 732 (967)
Q Consensus 698 L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~ 732 (967)
+++|+|...-. -..+..+++|+.|++.+|++...
T Consensus 95 L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 95 LSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGS
T ss_pred CcCCcCCChHH-hHHHHcCCCcceeeccCCcccch
Confidence 99999986532 35677899999999999998643
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=3.5e-09 Score=127.70 Aligned_cols=228 Identities=26% Similarity=0.310 Sum_probs=144.6
Q ss_pred CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCE
Q 046844 41 GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT 120 (967)
Q Consensus 41 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 120 (967)
.+++.|||+++.-.+.+ |.++++|-|||||+|+++.+. .+|..+++|+.|.+||+..+.....+|..+..|.+||+
T Consensus 571 ~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred cceEEEECCCCCccCcC--ChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 68999999997666677 899999999999999999999 79999999999999999998877677777777999999
Q ss_pred EeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCcc----EEEccCCCCCCCCccccc
Q 046844 121 LDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQ----VLSLSGCDLSGPINHYLA 196 (967)
Q Consensus 121 L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~----~L~Ls~~~l~~~~~~~l~ 196 (967)
|.+.... . ......-..+.+++.|+.+....... .....+..++.|+ .+.+.++... ..+..+.
T Consensus 647 L~l~~s~-~-----~~~~~~l~el~~Le~L~~ls~~~~s~-----~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~ 714 (889)
T KOG4658|consen 647 LRLPRSA-L-----SNDKLLLKELENLEHLENLSITISSV-----LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLG 714 (889)
T ss_pred EEeeccc-c-----ccchhhHHhhhcccchhhheeecchh-----HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccc
Confidence 9998632 1 12222333345566666555533321 1222333344444 2332222222 2345677
Q ss_pred CCCCCCEEEccCCCCCCcchhhhcC------CCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCC
Q 046844 197 KSRSLSVIRLHYNYGLSSGTEFLAH------LTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKN 270 (967)
Q Consensus 197 ~l~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 270 (967)
.+.+|+.|.+.++.+......+... ++++..+...+|... ..+.+....++|+.|.+..+......++....+
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHh
Confidence 8889999999888776443333221 222333333333322 223333455778888888777666666655555
Q ss_pred CCCCEEEccCCCCCC
Q 046844 271 SSLRDLILSHTGLSG 285 (967)
Q Consensus 271 ~~L~~L~L~~n~l~~ 285 (967)
..++.+.+..+.+.+
T Consensus 794 ~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 794 LELKELILPFNKLEG 808 (889)
T ss_pred hhcccEEeccccccc
Confidence 555555555444443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.2e-09 Score=82.71 Aligned_cols=58 Identities=38% Similarity=0.493 Sum_probs=26.3
Q ss_pred ccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCc
Q 046844 645 LQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702 (967)
Q Consensus 645 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 702 (967)
|++|++++|+++...+..|.++++|++|++++|+++.+.|.+|.++++|+.|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333444444444444444444444444444444444444444443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=7.5e-09 Score=81.82 Aligned_cols=60 Identities=35% Similarity=0.522 Sum_probs=54.2
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYI 679 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 679 (967)
+|++|++++|+++ .+|..+|.++++|++|++++|+++...|.+|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 7889999999998 77877799999999999999999988888999999999999999975
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.9e-09 Score=120.65 Aligned_cols=225 Identities=24% Similarity=0.257 Sum_probs=110.6
Q ss_pred hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844 588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667 (967)
Q Consensus 588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 667 (967)
++.+.+|+.|++.+|++.. +...+..+. +|++|++++|.|+. +.. +..++.|+.|++++|.|+.. ..+..++
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~--~L~~L~ls~N~I~~-i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLV--NLQVLDLSFNKITK-LEG--LSTLTLLKELNLSGNLISDI--SGLESLK 162 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhh--cchheecccccccc-ccc--hhhccchhhheeccCcchhc--cCCccch
Confidence 3445555566666665552 222122222 55556666665552 221 33444455555555555532 2334455
Q ss_pred CCCEEECCCCccccccc-hhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhccc
Q 046844 668 MLQVLDLRSNYISDNFP-CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAET 746 (967)
Q Consensus 668 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~ 746 (967)
.|+.+++++|+++.+.+ . ...+.+++.+++.+|.+.. ..++..+..+..+++..|.++-.-+
T Consensus 163 ~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n~i~~~~~------------ 225 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDNKISKLEG------------ 225 (414)
T ss_pred hhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccccceeccC------------
Confidence 55555555555555433 2 3445555555555555542 1222233333333444444331100
Q ss_pred CCCcccccccccCCCCceeeEEEEEEEccceeeecccCC--cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc
Q 046844 747 KSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN--IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS 824 (967)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ 824 (967)
.. .+. .++.+++++|++. .+|..+..+..+..|+++.|+++..
T Consensus 226 -----------------------------l~-----~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 226 -----------------------------LN-----ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred -----------------------------cc-----cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc
Confidence 00 011 2556667777665 3334455666677777777776632
Q ss_pred CCccccCCCCCCeEeCcCcccccc---CCcc-ccCCCCCCeEEccCCccccCCC
Q 046844 825 IPSSFGNLKEIESLDLSMNNLSGK---IPAQ-LASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 825 ip~~~~~l~~L~~LdLs~N~l~g~---ip~~-l~~l~~L~~l~ls~N~l~g~ip 874 (967)
..+.....+..+.++.|.+... .... ......+....+.+|......+
T Consensus 271 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 271 --EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred --ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 2234455566666666665521 1111 4455666777777776665554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=2.5e-09 Score=121.22 Aligned_cols=218 Identities=27% Similarity=0.296 Sum_probs=149.4
Q ss_pred cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
.+..++.+++..|.+.. +-..+.... +|+.|++.+|+|. .+... +..+.+|++|++++|+|+.+.+ +..++.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~--~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLK--SLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh-hhccccccc--ceeeeeccccchh-hcccc-hhhhhcchheeccccccccccc--hhhccch
Confidence 34566666777787763 223333334 8888888888887 55543 5567888888888888886643 5667778
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC-CCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP-RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS 748 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p-~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~ 748 (967)
+.|++++|.|+.. ..+..+++|+.+++++|++...- + . ...+.+++.+++++|.+.-.-...
T Consensus 143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie--~~~-~~~~~~l~~l~l~~n~i~~i~~~~------------ 205 (414)
T KOG0531|consen 143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIE--NDE-LSELISLEELDLGGNSIREIEGLD------------ 205 (414)
T ss_pred hhheeccCcchhc--cCCccchhhhcccCCcchhhhhh--hhh-hhhccchHHHhccCCchhcccchH------------
Confidence 8888888888764 34555788888888888887543 2 1 466777888888888764221111
Q ss_pred CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCC--CCcEEECCCCCCcccCC
Q 046844 749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFR--SLYALNMSHNALTGSIP 826 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~--~L~~L~Ls~N~l~g~ip 826 (967)
....+..+++..|.++-.-+ +..+. .|+.+++++|++. .+|
T Consensus 206 ----------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~ 248 (414)
T KOG0531|consen 206 ----------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSP 248 (414)
T ss_pred ----------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccc
Confidence 11223334777787764333 22233 3889999999998 566
Q ss_pred ccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccc
Q 046844 827 SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 870 (967)
Q Consensus 827 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 870 (967)
..+..+..+..||+++|+++..- .+.....+..+..+.|.+.
T Consensus 249 ~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 77888999999999999998653 3455667778888888775
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.9e-09 Score=107.31 Aligned_cols=186 Identities=24% Similarity=0.214 Sum_probs=96.3
Q ss_pred CCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCC
Q 046844 68 YLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL 147 (967)
Q Consensus 68 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l 147 (967)
.|++||||...++...+-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+++.|.+++ ...+.-.+.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHhh
Confidence 366777777666544344456667777777777777776666666777777777777765554 22233335556
Q ss_pred CCCCEEEcCCccCCCcchhHHHHh-cCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCC
Q 046844 148 TELTELHLDRVDLSASGTEWCKAL-SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLK 226 (967)
Q Consensus 148 ~~L~~L~l~~~~l~~~~~~~~~~l-~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 226 (967)
+.|.+|++++|.+...... ..+ .--++|+.|+|+++.-. -....+..-...+++|.
T Consensus 260 s~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLV 316 (419)
T ss_pred hhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCcee
Confidence 6666666665554322110 001 11234444444444211 01111222234566666
Q ss_pred EEeccCCC-CCCccchhccCCCCCCEEeccCCCCCC-CCCCCCCCCCCCCEEEccCCC
Q 046844 227 ALDLSECG-LQGKFPEKILHVPTLETLDLSINQLLQ-GSLPNFPKNSSLRDLILSHTG 282 (967)
Q Consensus 227 ~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~ 282 (967)
+|||++|. ++......|.+++.|++|.++.|.... ...-.+...+.|.+|++.++-
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 66666653 333334455566666666666664211 111124446667777766543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.5e-09 Score=102.43 Aligned_cols=236 Identities=22% Similarity=0.298 Sum_probs=134.9
Q ss_pred CcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCC--CCCeeeCCCCCCCCCCCCccccCC-CCCCEEeCCCCCCC
Q 046844 29 CCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQ--YLQSLNLGFTLFKGFQIPSRLGNL-TNLTYLNLSQGGFA 105 (967)
Q Consensus 29 ~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~--~L~~L~Ls~n~~~~~~lp~~l~~l-~~L~~L~Ls~~~~~ 105 (967)
|=+|.|+.-+. .-=+.+|+.+..+. |..++++. ...++.+....+....+.+.+.-+ ..|++||||+..++
T Consensus 125 C~Rfyr~~~de-~lW~~lDl~~r~i~-----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it 198 (419)
T KOG2120|consen 125 CKRFYRLASDE-SLWQTLDLTGRNIH-----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT 198 (419)
T ss_pred HHHHhhccccc-cceeeeccCCCccC-----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhee
Confidence 44698876654 34577888887765 34444432 233444443333322122222111 23556666555444
Q ss_pred ccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCC
Q 046844 106 GEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGC 185 (967)
Q Consensus 106 ~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~ 185 (967)
. ..+...+..|.+|+.|.+.++.+.+ ..+..+.+-.+|+.|+|+.|
T Consensus 199 ~-------------------------------stl~~iLs~C~kLk~lSlEg~~LdD---~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 199 V-------------------------------STLHGILSQCSKLKNLSLEGLRLDD---PIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred H-------------------------------HHHHHHHHHHHhhhhccccccccCc---HHHHHHhccccceeeccccc
Confidence 2 2233334455555555555554432 23455566666666666665
Q ss_pred C-CCCC-CcccccCCCCCCEEEccCCCCCCcchhh-hcC-CCCCCEEeccCCCCC---CccchhccCCCCCCEEeccCCC
Q 046844 186 D-LSGP-INHYLAKSRSLSVIRLHYNYGLSSGTEF-LAH-LTNLKALDLSECGLQ---GKFPEKILHVPTLETLDLSINQ 258 (967)
Q Consensus 186 ~-l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~-l~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~ 258 (967)
. ++.. ..-.+.+++.|..|++++|......... +.. -++|+.|+++++.-. ..+..-...+++|.+|||+.|.
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 3 2221 1123456677777777777654433222 111 257888888887422 1222334589999999999985
Q ss_pred CCC-CCCCCCCCCCCCCEEEccCCCCCCCccc---cccCCCCCCEEEccCCC
Q 046844 259 LLQ-GSLPNFPKNSSLRDLILSHTGLSGTLPD---SIGNLENLTRVEVSSCN 306 (967)
Q Consensus 259 ~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~ 306 (967)
... +-...|.+++.|++|.++.|.. .+|. .+...|.|.+|++.++-
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 333 3334577799999999999974 4554 45678999999998763
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=2.6e-07 Score=91.21 Aligned_cols=36 Identities=42% Similarity=0.580 Sum_probs=16.1
Q ss_pred CCCCCCEEeCCCCCCCccCChh----ccCCCCCCEEeCCC
Q 046844 90 NLTNLTYLNLSQGGFAGEIPTE----ISSLTRLVTLDLSG 125 (967)
Q Consensus 90 ~l~~L~~L~Ls~~~~~~~lp~~----l~~l~~L~~L~Ls~ 125 (967)
+|++|+..+||+|.|....|.. |++-+.|+||.+++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeec
Confidence 4455555555555544444322 23334444444443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=5.6e-08 Score=108.06 Aligned_cols=80 Identities=28% Similarity=0.271 Sum_probs=43.5
Q ss_pred cccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC-CCCCCCCcEE
Q 046844 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN-KVSWPLLQIV 722 (967)
Q Consensus 644 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~-~~~l~~L~~L 722 (967)
.|...+.+.|.+. ....++.-++.|+.|||++|+++... .+..|+.|+.|||++|++.-. |.. ...+ .|+.|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~v---p~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHV---PQLSMVGC-KLQLL 237 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccc---cccchhhh-hheee
Confidence 4555566666665 33445555666666666666665533 455566666666666666533 221 1122 26666
Q ss_pred ecCCccCc
Q 046844 723 DLACNKFS 730 (967)
Q Consensus 723 dls~N~l~ 730 (967)
.+++|.++
T Consensus 238 ~lrnN~l~ 245 (1096)
T KOG1859|consen 238 NLRNNALT 245 (1096)
T ss_pred eecccHHH
Confidence 66666553
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=1.3e-07 Score=99.04 Aligned_cols=280 Identities=20% Similarity=0.169 Sum_probs=140.4
Q ss_pred CCCCeeeCCCCCCCC-CCCCccccCCCCCCEEeCCCCC-CCccCChhc-cCCCCCCEEeCCCCCCCccccccccccHHHH
Q 046844 67 QYLQSLNLGFTLFKG-FQIPSRLGNLTNLTYLNLSQGG-FAGEIPTEI-SSLTRLVTLDLSGIVPIEYSYTVWIANLSLF 143 (967)
Q Consensus 67 ~~L~~L~Ls~n~~~~-~~lp~~l~~l~~L~~L~Ls~~~-~~~~lp~~l-~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~ 143 (967)
..|+.|.|.++.-.+ ..+-....+++++++|++.+|. +++..-..+ ..+++|++|++..|..++ ...+...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT------~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT------DVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH------HHHHHHH
Confidence 456777777764222 2233445567777777777774 232222223 457777777777765444 2223334
Q ss_pred hcCCCCCCEEEcCCccC-CCcchhHHHHhcCCCCccEEEccCCCCCCC--CcccccCCCCCCEEEccCCCC-CCcch-hh
Q 046844 144 LQNLTELTELHLDRVDL-SASGTEWCKALSFLPNLQVLSLSGCDLSGP--INHYLAKSRSLSVIRLHYNYG-LSSGT-EF 218 (967)
Q Consensus 144 l~~l~~L~~L~l~~~~l-~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~--~~~~l~~l~~L~~L~L~~n~~-~~~~~-~~ 218 (967)
...+++|++|+++++.- +..+. -.-...+..++.+.+.+|.=.+. +...=+.+..+.++++..+.. ++... ..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv--~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGV--QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcc--hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 56677777777777642 22111 11224455566665555431111 001112233344455444422 22111 11
Q ss_pred hcCCCCCCEEeccCCCCCCc-cchhc-cCCCCCCEEeccCCCCC-CCCCCCCC-CCCCCCEEEccCCCCCC--Ccccccc
Q 046844 219 LAHLTNLKALDLSECGLQGK-FPEKI-LHVPTLETLDLSINQLL-QGSLPNFP-KNSSLRDLILSHTGLSG--TLPDSIG 292 (967)
Q Consensus 219 l~~l~~L~~L~Ls~n~l~~~-~~~~l-~~l~~L~~L~L~~n~~~-~~~~~~~~-~l~~L~~L~L~~n~l~~--~~~~~l~ 292 (967)
-..+..|+.|+.+++.-.+. .-.++ .+.++|+.|.++.|+.. ......+. .++.|+.+++.++.... .+...-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 12456667777666643221 11122 35567777777776532 12222222 26667777776665421 1222234
Q ss_pred CCCCCCEEEccCCCCCCCC-----CccccCCCCCcEEEccCcccccc--CccccccCcccEEECCCCCC
Q 046844 293 NLENLTRVEVSSCNFTGPI-----PPSMANLTQLFHMDFSSNHFFGP--IPSLHKSRNLNNLDLSFNNL 354 (967)
Q Consensus 293 ~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~L~~L~L~~n~l 354 (967)
+++.|++|.+++|...... ...-..+..|+.+.++++..... ......+++|+.+++.+++-
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 5677777777776543211 11223456677777777765431 22233445788888877754
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=7.6e-08 Score=85.03 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=50.7
Q ss_pred CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEc
Q 046844 785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL 864 (967)
Q Consensus 785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 864 (967)
+.++.++|++|.++ .+|.++..++.|+.||++.|.|. ..|.-|..|.++..||...|.+- +||..+-.-+.....++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 34555666666665 56666666666666676666666 45666666666666666666654 44443322222333344
Q ss_pred cCCccccCCCCC
Q 046844 865 SYNNLVGKIPTS 876 (967)
Q Consensus 865 s~N~l~g~ip~~ 876 (967)
.++.+.|.-|.+
T Consensus 154 gnepl~~~~~~k 165 (177)
T KOG4579|consen 154 GNEPLGDETKKK 165 (177)
T ss_pred cCCcccccCccc
Confidence 555555555543
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=1.7e-06 Score=85.59 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=63.1
Q ss_pred CCCCCCEEeccCCCCCCCCCCC----CCCCCCCCEEEccCCCCCCCcc-----ccccCCCCCCEEEccCCCCCCC----C
Q 046844 245 HVPTLETLDLSINQLLQGSLPN----FPKNSSLRDLILSHTGLSGTLP-----DSIGNLENLTRVEVSSCNFTGP----I 311 (967)
Q Consensus 245 ~l~~L~~L~L~~n~~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~Ls~n~l~~~----~ 311 (967)
.-|.|++.....|++..++... +..-..|+++.+..|.|.-... ..+..+.+|+.|||..|.++.. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 3456666666666655544331 2223467777777776653211 1234567777777777776632 2
Q ss_pred CccccCCCCCcEEEccCccccccCc-------cccccCcccEEECCCCCCCCC
Q 046844 312 PPSMANLTQLFHMDFSSNHFFGPIP-------SLHKSRNLNNLDLSFNNLSGG 357 (967)
Q Consensus 312 ~~~l~~l~~L~~L~L~~n~l~~~~~-------~~~~~~~L~~L~L~~n~l~~~ 357 (967)
...+..++.|+.|.+..|-++..-. .-...++|..|...+|...+.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 2334455667777777776643211 112344777777777766543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.07 E-value=7e-08 Score=107.33 Aligned_cols=127 Identities=30% Similarity=0.292 Sum_probs=64.8
Q ss_pred CcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEE
Q 046844 594 FQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD 673 (967)
Q Consensus 594 L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 673 (967)
|.+.+.++|.+. .+...+...+ .|+.|+|++|+++ .+. . +..++.|++|||++|.++...--...+|. |+.|.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~--ale~LnLshNk~~-~v~-~-Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLP--ALESLNLSHNKFT-KVD-N-LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHH--Hhhhhccchhhhh-hhH-H-HHhcccccccccccchhccccccchhhhh-heeee
Confidence 444555555554 3444444433 5556666666655 222 1 45555666666666666533222333444 66666
Q ss_pred CCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844 674 LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730 (967)
Q Consensus 674 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~ 730 (967)
+++|.++.. ..+.++.+|+-||+++|-+.+.-. -.-+..+..|+.|.|.+|++-
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence 666655542 234555666666666665555421 122334455566666666653
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=2.5e-06 Score=85.49 Aligned_cols=68 Identities=29% Similarity=0.260 Sum_probs=41.6
Q ss_pred HhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCC
Q 046844 143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYG 211 (967)
Q Consensus 143 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~ 211 (967)
+-..++.++++|+.+|.+++- .+...-+.++|.|+.|+|+.|.+...+...-....+|++|-|.+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdW-seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDW-SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred HHHHhhhhhhhhcccchhccH-HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 344566777777777777653 34455567788888888888877764432213445555555555443
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.87 E-value=1.5e-06 Score=91.27 Aligned_cols=296 Identities=20% Similarity=0.162 Sum_probs=184.0
Q ss_pred CCCCEEeCCCCCCCcc--CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCc-cCCCcchhHH
Q 046844 92 TNLTYLNLSQGGFAGE--IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRV-DLSASGTEWC 168 (967)
Q Consensus 92 ~~L~~L~Ls~~~~~~~--lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~~~~~~~ 168 (967)
..|+.|.++++.-.+. +-....+++++++|++.+|..++ ....-..-..+++|++|++..| .+++. ..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT------d~s~~sla~~C~~l~~l~L~~c~~iT~~---~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT------DSSLLSLARYCRKLRHLNLHSCSSITDV---SL 208 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc------HHHHHHHHHhcchhhhhhhcccchhHHH---HH
Confidence 4678888888864432 22334689999999999987655 3344555678999999999884 34332 12
Q ss_pred H-HhcCCCCccEEEccCCC-CCCC-CcccccCCCCCCEEEccCCCCCCcchhhh----cCCCCCCEEeccCCCC-CCcc-
Q 046844 169 K-ALSFLPNLQVLSLSGCD-LSGP-INHYLAKSRSLSVIRLHYNYGLSSGTEFL----AHLTNLKALDLSECGL-QGKF- 239 (967)
Q Consensus 169 ~-~l~~l~~L~~L~Ls~~~-l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~L~~L~Ls~n~l-~~~~- 239 (967)
+ -...+++|++|++++|. +++. +.....+++.++.+.+.+|.-.+. +.+ +.+..+.++++..|.. +..-
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHH
Confidence 2 33568999999999984 4442 223455677777777776632221 222 3455577777767643 2221
Q ss_pred chhccCCCCCCEEeccCCCCC-CCCCCCC-CCCCCCCEEEccCCCC-CCCccccc-cCCCCCCEEEccCCCCC--CCCCc
Q 046844 240 PEKILHVPTLETLDLSINQLL-QGSLPNF-PKNSSLRDLILSHTGL-SGTLPDSI-GNLENLTRVEVSSCNFT--GPIPP 313 (967)
Q Consensus 240 ~~~l~~l~~L~~L~L~~n~~~-~~~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~Ls~n~l~--~~~~~ 313 (967)
-..-..+..|+.|+.+++... ...+.++ .++++|+.|-++.++- +..--..+ .+++.|+.+++..+... +.+..
T Consensus 287 ~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 111235678899998887531 1112223 3488999999998873 22211222 36788999999888653 22233
Q ss_pred cccCCCCCcEEEccCccccccC--cc----ccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC--cCh
Q 046844 314 SMANLTQLFHMDFSSNHFFGPI--PS----LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS--IPR 385 (967)
Q Consensus 314 ~l~~l~~L~~L~L~~n~l~~~~--~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 385 (967)
.-.+++.|+.+.++.|.....- .. .-....|+.+.+++++......-..+..+++|+.+++.++.-... +..
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 3356889999999988653221 11 122337889999999876544444467888999999988764321 222
Q ss_pred hccCCCCCCEEeC
Q 046844 386 SLFLLPNLEMLQL 398 (967)
Q Consensus 386 ~l~~l~~L~~L~L 398 (967)
.-.++|+++...+
T Consensus 447 ~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 447 FATHLPNIKVHAY 459 (483)
T ss_pred HHhhCccceehhh
Confidence 3346777776543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=2.9e-05 Score=91.81 Aligned_cols=109 Identities=22% Similarity=0.266 Sum_probs=65.4
Q ss_pred CCCCEEeCCCCCCCccccccccccHHHHhc-CCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCccc
Q 046844 116 TRLVTLDLSGIVPIEYSYTVWIANLSLFLQ-NLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHY 194 (967)
Q Consensus 116 ~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~ 194 (967)
.+|++||++|... ....|+..++ .+|.|++|.+.+..+.. .++......+|+|+.||+|+++++.. ..
T Consensus 122 ~nL~~LdI~G~~~-------~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl--~G 190 (699)
T KOG3665|consen 122 QNLQHLDISGSEL-------FSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL--SG 190 (699)
T ss_pred HhhhhcCccccch-------hhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc--HH
Confidence 4677777776332 2344554443 46777777777765543 23445556777888888887777654 45
Q ss_pred ccCCCCCCEEEccCCCCCC-cchhhhcCCCCCCEEeccCCCC
Q 046844 195 LAKSRSLSVIRLHYNYGLS-SGTEFLAHLTNLKALDLSECGL 235 (967)
Q Consensus 195 l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l 235 (967)
++.+++|++|.+.+-.+.. .....+.++++|+.||+|....
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 6667777777666554443 2223345566666666665543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=3.2e-06 Score=84.81 Aligned_cols=157 Identities=20% Similarity=0.161 Sum_probs=73.3
Q ss_pred ccCCCCCcEEEccCccccccCccc-cccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC--cChhcc-CC
Q 046844 315 MANLTQLFHMDFSSNHFFGPIPSL-HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS--IPRSLF-LL 390 (967)
Q Consensus 315 l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~-~l 390 (967)
+.++|.|++|+++.|++...+... ....+|++|-|.+..+.-.-..+++..+|.++.|.++.|.+... ...... .-
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 344445555555555444433332 12235566666555554333334455566666666666633210 000111 01
Q ss_pred CCCCEEeCcCC---------cCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCC
Q 046844 391 PNLEMLQLSNN---------QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461 (967)
Q Consensus 391 ~~L~~L~L~~n---------~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 461 (967)
+.+++|.+..| ++.. .++++..+.+..|.+...-...-+..+|.+..|+|+.|+|....
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r--------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa---- 240 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSR--------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA---- 240 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHh--------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHH----
Confidence 22333333333 2222 23345555555555543333333345566666666666665331
Q ss_pred CCccCCCCCCCCCccEEECcCCccC
Q 046844 462 KPRAIPILKNQSQLSVLDISDNQIS 486 (967)
Q Consensus 462 ~~~~ip~l~~~~~L~~L~Ls~n~i~ 486 (967)
.+..+..+++|..|.++++.+.
T Consensus 241 ---svD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 241 ---SVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ---HHHHHcCCchhheeeccCCccc
Confidence 2233556666666666666654
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=1.9e-05 Score=56.90 Aligned_cols=36 Identities=39% Similarity=0.662 Sum_probs=18.9
Q ss_pred CCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc
Q 046844 810 SLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS 846 (967)
Q Consensus 810 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 846 (967)
+|++|++++|+++ .+|..+++|++|+.||+++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34445555555555555555555
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=5.5e-05 Score=72.16 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=84.3
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccccc-chhhhcCCCCCEEE
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF-PCWLRNASSLQVLV 697 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 697 (967)
....+||++|.+. .++. |+.++.|.+|.|++|+|+.+-|.--..+++|+.|.|.+|.|.... -.-+..|+.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 6778999999986 4543 889999999999999999888876677889999999999887532 12366799999999
Q ss_pred ccCCccceecCC-CCCCCCCCCCcEEecCCcc
Q 046844 698 LRSNNFSGHISC-PRNKVSWPLLQIVDLACNK 728 (967)
Q Consensus 698 L~~N~l~~~~~~-p~~~~~l~~L~~Ldls~N~ 728 (967)
+-+|+.+..-.. -..+..+|+|++||+..=.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999998753211 1246788999999987644
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00015 Score=78.80 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc-cccCcCCCCCCCCccEEeCCCC
Q 046844 469 LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN-LVVSLQEPYSISGIRFLDLHSN 531 (967)
Q Consensus 469 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~l~~~~~~~~L~~L~Ls~n 531 (967)
+..+.+++.|++++|.++ .+|. . ..+|+.|++++| .++.+|... .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----L-P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----L-PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----C-CCCCcEEEccCCCCcccCCchh-hhhhhheEccCc
Confidence 344566777777777665 3342 1 124666666552 333333322 234555555544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=4e-05 Score=55.24 Aligned_cols=36 Identities=44% Similarity=0.601 Sum_probs=15.7
Q ss_pred cccEEeCCCCccCCCCcccccCCCCCCEEECCCCccc
Q 046844 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS 680 (967)
Q Consensus 644 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 680 (967)
+|++|++++|+|+. +|..+++|++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2333444455555555555444
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=2.6e-06 Score=75.56 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=78.4
Q ss_pred cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
....|+..+|++|.+. ..|..+... .+.++.|++++|.++ .+|.. +..++.|+.|+++.|.+. ..|+.+..+.+|
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~k-f~t~t~lNl~~neis-dvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIK-FPTATTLNLANNEIS-DVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhc-cchhhhhhcchhhhh-hchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 3455667788888887 566665443 237888888888888 78888 888888888888888888 556777778888
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEEccCCccceec
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHI 707 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 707 (967)
-.||..+|.+..+.-+.| .-+..-...++++.+.+.-
T Consensus 126 ~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 126 DMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLGDET 162 (177)
T ss_pred HHhcCCCCccccCcHHHh-ccccHHHHHhcCCcccccC
Confidence 889988888876544432 2222223345667676543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=4.3e-05 Score=90.45 Aligned_cols=150 Identities=24% Similarity=0.294 Sum_probs=106.4
Q ss_pred CCCCEEeCCCCCCC-ccCChhcc-CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHH
Q 046844 92 TNLTYLNLSQGGFA-GEIPTEIS-SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCK 169 (967)
Q Consensus 92 ~~L~~L~Ls~~~~~-~~lp~~l~-~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 169 (967)
.+|++||+++.... ..=|..++ .||.|++|.+++- . ....+......++++|+.||+++++++.. .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-Q------FDNDDFSQLCASFPNLRSLDISGTNISNL-----S 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-e------ecchhHHHHhhccCccceeecCCCCccCc-----H
Confidence 78999999886432 23344554 4899999999872 2 22334556678899999999999988764 6
Q ss_pred HhcCCCCccEEEccCCCCCC-CCcccccCCCCCCEEEccCCCCCCcc--h----hhhcCCCCCCEEeccCCCCCCccchh
Q 046844 170 ALSFLPNLQVLSLSGCDLSG-PINHYLAKSRSLSVIRLHYNYGLSSG--T----EFLAHLTNLKALDLSECGLQGKFPEK 242 (967)
Q Consensus 170 ~l~~l~~L~~L~Ls~~~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (967)
+++.+++|++|.+.+-.+.. ..-..+.++++|++||+|........ . +.-..+|+|+.||.|+..+.+.+-+.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 78899999999998877765 22346778999999999987544332 1 22246899999999999888665554
Q ss_pred cc-CCCCCCEEe
Q 046844 243 IL-HVPTLETLD 253 (967)
Q Consensus 243 l~-~l~~L~~L~ 253 (967)
+- ..++|+.+.
T Consensus 270 ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 270 LLNSHPNLQQIA 281 (699)
T ss_pred HHHhCccHhhhh
Confidence 32 345555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00037 Score=66.68 Aligned_cols=86 Identities=23% Similarity=0.220 Sum_probs=71.5
Q ss_pred CCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcE
Q 046844 642 DCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQI 721 (967)
Q Consensus 642 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~ 721 (967)
+.+...+||++|.+... ..|..++.|.+|.+++|+|+.+.|..-.-+++|+.|.|.+|.|...-. -.-+..+|.|+.
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCccce
Confidence 35678899999999754 457789999999999999999988776678999999999999975432 345678899999
Q ss_pred EecCCccCc
Q 046844 722 VDLACNKFS 730 (967)
Q Consensus 722 Ldls~N~l~ 730 (967)
|.+-+|+..
T Consensus 118 Ltll~Npv~ 126 (233)
T KOG1644|consen 118 LTLLGNPVE 126 (233)
T ss_pred eeecCCchh
Confidence 999999864
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.00045 Score=75.21 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=50.7
Q ss_pred CCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCC-ccceecCCCCCCCCCCCC
Q 046844 641 GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN-NFSGHISCPRNKVSWPLL 719 (967)
Q Consensus 641 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~p~~~~~l~~L 719 (967)
.+.+++.|++++|.++. +| . --.+|+.|+++++.--..+|+.+ .++|+.|++++| .+... | +.|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL---P------~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL---P------ESV 114 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc---c------ccc
Confidence 35789999999998884 45 2 23469999998855445566655 368999999988 44422 4 346
Q ss_pred cEEecCCccC
Q 046844 720 QIVDLACNKF 729 (967)
Q Consensus 720 ~~Ldls~N~l 729 (967)
+.|+++.|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777776654
No 63
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.95 E-value=0.0005 Score=49.44 Aligned_cols=21 Identities=62% Similarity=1.255 Sum_probs=14.8
Q ss_pred CCcCCCCCCCC--CCCcccceeEeC
Q 046844 16 TKLSQWSSHQS--SDCCDWSGVRCD 38 (967)
Q Consensus 16 ~~l~~w~~~~~--~~~c~w~gv~C~ 38 (967)
..+++| ... .+||+|.||+|+
T Consensus 21 ~~l~~W--~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 21 GVLSSW--NPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp CCCTT----TT--S-CCCSTTEEE-
T ss_pred cccccC--CCcCCCCCeeeccEEeC
Confidence 579999 444 799999999996
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.91 E-value=0.00034 Score=81.89 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=7.1
Q ss_pred CCCCCEEeCcCCcC
Q 046844 390 LPNLEMLQLSNNQF 403 (967)
Q Consensus 390 l~~L~~L~L~~n~l 403 (967)
+..++.+++.++..
T Consensus 426 ~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRV 439 (482)
T ss_pred hhccccCCccCccc
Confidence 44455555555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.0011 Score=66.43 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=32.7
Q ss_pred CCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCC--CCCccCChhccCCCCCCEEeCCCC
Q 046844 65 DLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQG--GFAGEIPTEISSLTRLVTLDLSGI 126 (967)
Q Consensus 65 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~L~Ls~~ 126 (967)
.+..|+.|++.+..++.. ..+-.|++|+.|.+|.| ++.+.++....++++|++|++++|
T Consensus 41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 444555555554444422 23445666777777766 445555544455566666666664
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.68 E-value=0.0041 Score=57.73 Aligned_cols=105 Identities=19% Similarity=0.357 Sum_probs=45.3
Q ss_pred hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844 588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667 (967)
Q Consensus 588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 667 (967)
|.++++|+.+.+.. .+...-...+..+. +|+.+++.++ +. .++..+|.++.+|+.+.+.+ .+.......|..++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~--~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCT--SLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-T--T-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccc--cccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 44455555555553 33322223333333 5666666553 43 55555566665666666654 33333445566666
Q ss_pred CCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844 668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700 (967)
Q Consensus 668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 700 (967)
+|+.+++..+ ++.+...+|.++ .|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6666666554 554455556555 666666554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.62 E-value=0.0043 Score=57.54 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=29.1
Q ss_pred hhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCC
Q 046844 218 FLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENL 297 (967)
Q Consensus 218 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 297 (967)
.|.++++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++|+.+.+..+ +.......|.++ .|
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 3444444444444442 3322333344444445554433 222233334444455555555432 222223344444 55
Q ss_pred CEEEccC
Q 046844 298 TRVEVSS 304 (967)
Q Consensus 298 ~~L~Ls~ 304 (967)
+.+.+..
T Consensus 106 ~~i~~~~ 112 (129)
T PF13306_consen 106 KEINIPS 112 (129)
T ss_dssp -EEE-TT
T ss_pred eEEEECC
Confidence 5555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00029 Score=70.51 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=21.4
Q ss_pred CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCC
Q 046844 66 LQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFA 105 (967)
Q Consensus 66 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~ 105 (967)
+.+.+.|+..++.+.++ ....+++.|++|.||-|.++
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs 54 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS 54 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccc
Confidence 44555666666666544 23345666666666666655
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0037 Score=62.77 Aligned_cols=60 Identities=35% Similarity=0.453 Sum_probs=36.8
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCC--ccCCCCcccccCCCCCCEEECCCCcccc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN--QLQGVVPKSLANCNMLQVLDLRSNYISD 681 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 681 (967)
.|+.|.+.+..++ ++.. |+.+++|+.|.++.| ++++.++.....+++|++|++++|+|+.
T Consensus 44 ~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 44 ELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred chhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 6666666666665 3322 666677777777777 5555555445556666666666666653
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.0026 Score=74.31 Aligned_cols=239 Identities=22% Similarity=0.205 Sum_probs=132.5
Q ss_pred CCCCCCeeeCCCCC-CCCCCCCccccCCCCCCEEeCCCC-CCCccCC----hhccCCCCCCEEeCCCCCCCccccccccc
Q 046844 65 DLQYLQSLNLGFTL-FKGFQIPSRLGNLTNLTYLNLSQG-GFAGEIP----TEISSLTRLVTLDLSGIVPIEYSYTVWIA 138 (967)
Q Consensus 65 ~l~~L~~L~Ls~n~-~~~~~lp~~l~~l~~L~~L~Ls~~-~~~~~lp----~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~ 138 (967)
..+.|+.|.+..+. +....+-.....+++|+.|+++++ ......+ .....+.+|++|+++++..++ ..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is------d~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT------DI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC------ch
Confidence 47888999888773 332213345668899999999873 2221222 234567899999999875443 23
Q ss_pred cHHHHhcCCCCCCEEEcCCcc-CCCcchhHHHHhcCCCCccEEEccCCCCCCC--CcccccCCCCCCEEEccCCCCCCcc
Q 046844 139 NLSLFLQNLTELTELHLDRVD-LSASGTEWCKALSFLPNLQVLSLSGCDLSGP--INHYLAKSRSLSVIRLHYNYGLSSG 215 (967)
Q Consensus 139 ~l~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~ 215 (967)
.+......+++|++|.+..+. +++. .+......++.|++|++++|..... ......++++|+.|.+.....
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~--gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---- 333 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDE--GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---- 333 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchh--HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----
Confidence 333445558999999988776 4543 3344557789999999999875421 223344566666655443221
Q ss_pred hhhhcCCCCCCEEeccCCCCC---CccchhccCCCCCCEEeccCCCCCCCCC-CCCCCCCCCCEEEccCCCCCCCccccc
Q 046844 216 TEFLAHLTNLKALDLSECGLQ---GKFPEKILHVPTLETLDLSINQLLQGSL-PNFPKNSSLRDLILSHTGLSGTLPDSI 291 (967)
Q Consensus 216 ~~~l~~l~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l 291 (967)
+..++.+.+..+... ......+..+++++.+.+..+....... ..+.+++.|. ..+.. ..
T Consensus 334 ------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~ 397 (482)
T KOG1947|consen 334 ------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RL 397 (482)
T ss_pred ------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------Hh
Confidence 344444444443321 1222234566777777777665333331 2334455552 21111 11
Q ss_pred cCCCCCCEEEccCCCCCCC-CCccccC-CCCCcEEEccCccc
Q 046844 292 GNLENLTRVEVSSCNFTGP-IPPSMAN-LTQLFHMDFSSNHF 331 (967)
Q Consensus 292 ~~l~~L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l 331 (967)
.....++.|+++.+..... .-..... +..++.+++.++..
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 1122267777777654311 1111111 45566666666543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0031 Score=37.70 Aligned_cols=12 Identities=67% Similarity=0.805 Sum_probs=5.0
Q ss_pred CCeEeCcCcccc
Q 046844 835 IESLDLSMNNLS 846 (967)
Q Consensus 835 L~~LdLs~N~l~ 846 (967)
|+.|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.00031 Score=70.21 Aligned_cols=82 Identities=32% Similarity=0.372 Sum_probs=45.8
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccc-hhhhcCCCCCEEE
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFP-CWLRNASSLQVLV 697 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ 697 (967)
+.+.|++.++.++ .|.- ...++.|++|.|+-|+|+..-| |..|+.|++|+|..|.|..... .-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~-DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4456666666665 3332 2445666666666666664433 5566666666666666654322 2344556666666
Q ss_pred ccCCccce
Q 046844 698 LRSNNFSG 705 (967)
Q Consensus 698 L~~N~l~~ 705 (967)
|..|+-.|
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 66665444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.63 E-value=0.0043 Score=37.07 Aligned_cols=22 Identities=64% Similarity=0.806 Sum_probs=15.0
Q ss_pred CCcEEECCCCCCcccCCccccCC
Q 046844 810 SLYALNMSHNALTGSIPSSFGNL 832 (967)
Q Consensus 810 ~L~~L~Ls~N~l~g~ip~~~~~l 832 (967)
+|++||||+|+|+ .||.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3677777777777 677776653
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.85 E-value=0.001 Score=75.54 Aligned_cols=73 Identities=29% Similarity=0.423 Sum_probs=33.6
Q ss_pred cHHHHhcCCCCCCEEEcCCccCCCcchhH-HHHhcCC-CCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCC
Q 046844 139 NLSLFLQNLTELTELHLDRVDLSASGTEW-CKALSFL-PNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYG 211 (967)
Q Consensus 139 ~l~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~l-~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~ 211 (967)
.+...+..+..|+.|+++++.+.+.+... +..+... ..+++|++..|.++.. +.+.+.....++.++++.|.+
T Consensus 106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 34444455555555555555554333222 2222222 3455555555555543 223344455555555555544
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.92 E-value=0.0066 Score=59.45 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=69.3
Q ss_pred CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCE
Q 046844 41 GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT 120 (967)
Q Consensus 41 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 120 (967)
.||+.||++.+.+... ...+..++.|..||++.|.+. .+|..++++..++.+++.+|..+ ..|.+.++++++++
T Consensus 42 kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 5899999999887632 356778889999999999888 68999999999999999988887 88999999999999
Q ss_pred EeCCCC
Q 046844 121 LDLSGI 126 (967)
Q Consensus 121 L~Ls~~ 126 (967)
+++.++
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 999885
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.79 E-value=0.0059 Score=69.44 Aligned_cols=191 Identities=29% Similarity=0.272 Sum_probs=115.3
Q ss_pred CCCCeeeCCCCCCCCCC---CCccccCCCCCCEEeCCCCCCCccCChhc----cCC-CCCCEEeCCCCCCCccccccccc
Q 046844 67 QYLQSLNLGFTLFKGFQ---IPSRLGNLTNLTYLNLSQGGFAGEIPTEI----SSL-TRLVTLDLSGIVPIEYSYTVWIA 138 (967)
Q Consensus 67 ~~L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l----~~l-~~L~~L~Ls~~~~l~~~~~~~~~ 138 (967)
..++.|.|.+|.+.... +-..+....+|..|+++.|.+.+.--..+ ... ..|++|++..|.... ....
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~----~g~~ 162 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS----EGAA 162 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc----cchH
Confidence 34677777777776541 22345566777778888777764322222 222 456667766653322 2333
Q ss_pred cHHHHhcCCCCCCEEEcCCccCCCcchh-HHHHhc----CCCCccEEEccCCCCCCCCc----ccccCCCC-CCEEEccC
Q 046844 139 NLSLFLQNLTELTELHLDRVDLSASGTE-WCKALS----FLPNLQVLSLSGCDLSGPIN----HYLAKSRS-LSVIRLHY 208 (967)
Q Consensus 139 ~l~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~l~----~l~~L~~L~Ls~~~l~~~~~----~~l~~l~~-L~~L~L~~ 208 (967)
.+...+.+...++.++++.|.+...+.. .+.++. ...++++|.+++|.++.... ..+...+. +..+++..
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 4455566677777777777766533322 223333 46778888888887764322 33444555 66688888
Q ss_pred CCCCCcch----hhhcCC-CCCCEEeccCCCCCCcc----chhccCCCCCCEEeccCCCCCC
Q 046844 209 NYGLSSGT----EFLAHL-TNLKALDLSECGLQGKF----PEKILHVPTLETLDLSINQLLQ 261 (967)
Q Consensus 209 n~~~~~~~----~~l~~l-~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~ 261 (967)
|.+.+... +.+..+ ..+++++++.|.++..- ...+..++.++++.++.|.+..
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 87765532 234444 57788888888887543 4455677788888888887644
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.38 E-value=0.011 Score=57.92 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEE
Q 046844 784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863 (967)
Q Consensus 784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ 863 (967)
....+.||+|.|++.. .-..|.-++.+..||+|.|++. ..|..++++..+..+++-.|+++ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3457889999999863 3455777888999999999998 78999999999999999999998 6799999999999999
Q ss_pred ccCCcc
Q 046844 864 LSYNNL 869 (967)
Q Consensus 864 ls~N~l 869 (967)
+..|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 999876
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.28 E-value=0.28 Score=27.10 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=4.7
Q ss_pred CCCEEeCCCCCCC
Q 046844 93 NLTYLNLSQGGFA 105 (967)
Q Consensus 93 ~L~~L~Ls~~~~~ 105 (967)
+|++|+|++|++.
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444433
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.54 E-value=0.29 Score=29.86 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=11.3
Q ss_pred CCCCCEEECCCCccccccchhh
Q 046844 666 CNMLQVLDLRSNYISDNFPCWL 687 (967)
Q Consensus 666 l~~L~~L~Ls~N~l~~~~p~~l 687 (967)
+++|++|+|++|+|++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3566677777776665444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.89 E-value=0.68 Score=28.80 Aligned_cols=20 Identities=35% Similarity=0.280 Sum_probs=11.0
Q ss_pred CCCCEEECCCCccccccchh
Q 046844 667 NMLQVLDLRSNYISDNFPCW 686 (967)
Q Consensus 667 ~~L~~L~Ls~N~l~~~~p~~ 686 (967)
++|+.|+|++|+|+.+.+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666665544433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.89 E-value=0.68 Score=28.80 Aligned_cols=20 Identities=35% Similarity=0.280 Sum_probs=11.0
Q ss_pred CCCCEEECCCCccccccchh
Q 046844 667 NMLQVLDLRSNYISDNFPCW 686 (967)
Q Consensus 667 ~~L~~L~Ls~N~l~~~~p~~ 686 (967)
++|+.|+|++|+|+.+.+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45566666666665544433
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.81 E-value=0.69 Score=28.78 Aligned_cols=14 Identities=50% Similarity=0.646 Sum_probs=7.6
Q ss_pred CCCCeEeCcCcccc
Q 046844 833 KEIESLDLSMNNLS 846 (967)
Q Consensus 833 ~~L~~LdLs~N~l~ 846 (967)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.81 E-value=0.69 Score=28.78 Aligned_cols=14 Identities=50% Similarity=0.646 Sum_probs=7.6
Q ss_pred CCCCeEeCcCcccc
Q 046844 833 KEIESLDLSMNNLS 846 (967)
Q Consensus 833 ~~L~~LdLs~N~l~ 846 (967)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=0.31 Score=47.35 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=23.4
Q ss_pred CCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCc
Q 046844 93 NLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIE 130 (967)
Q Consensus 93 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~ 130 (967)
.++.+|-+++.+..+--+.+.+++.++.|.+.+|..+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d 139 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD 139 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh
Confidence 45666666666665555556666666666666665444
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.57 E-value=0.23 Score=30.28 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=7.1
Q ss_pred CCCCeEeCcCcccccc
Q 046844 833 KEIESLDLSMNNLSGK 848 (967)
Q Consensus 833 ~~L~~LdLs~N~l~g~ 848 (967)
++|++|||++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.12 E-value=0.25 Score=47.98 Aligned_cols=32 Identities=41% Similarity=0.524 Sum_probs=12.7
Q ss_pred CCCCEEeccCCC-CCCCCCCCCCCCCCCCEEEc
Q 046844 247 PTLETLDLSINQ-LLQGSLPNFPKNSSLRDLIL 278 (967)
Q Consensus 247 ~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L 278 (967)
++|+.|+|++|. |++..+..+..+++|+.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 344444444332 23333333333444444444
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.05 E-value=10 Score=41.99 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=28.6
Q ss_pred CCCEEEccCCCCCCCccccccC---CCCCCEEEccCCCCCC---CCCccccCCCCCcEEEccCccc
Q 046844 272 SLRDLILSHTGLSGTLPDSIGN---LENLTRVEVSSCNFTG---PIPPSMANLTQLFHMDFSSNHF 331 (967)
Q Consensus 272 ~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l 331 (967)
.+.+++++.|.....+|..+.. -.-+++++.+.-.+.- .-+...+.-+++.+.+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 4556666666655555543321 1234555555544331 1122233445666666665544
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.64 E-value=3.8 Score=25.57 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=8.4
Q ss_pred CCCCEEECCCCcccc
Q 046844 667 NMLQVLDLRSNYISD 681 (967)
Q Consensus 667 ~~L~~L~Ls~N~l~~ 681 (967)
++|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455566666665543
No 89
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=62.83 E-value=6.8 Score=27.23 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.0
Q ss_pred eehhHHHH
Q 046844 927 AMSIGFAV 934 (967)
Q Consensus 927 ~~~~~~~~ 934 (967)
++++++++
T Consensus 16 ~VvVPV~v 23 (40)
T PF08693_consen 16 GVVVPVGV 23 (40)
T ss_pred EEEechHH
Confidence 33333333
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.03 E-value=5.6 Score=24.78 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=13.3
Q ss_pred CCCceeeccCCcCCCCCc
Q 046844 542 PNTSYVDYSNNNFTSIPA 559 (967)
Q Consensus 542 ~~l~~L~ls~n~l~~i~~ 559 (967)
+.++.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777788888877775
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.38 E-value=5.5 Score=35.78 Aligned_cols=27 Identities=11% Similarity=0.269 Sum_probs=15.9
Q ss_pred eEEeehhHHHHHHHHHHHHHHHhhhhH
Q 046844 924 FFIAMSIGFAVGFGAVVSPLMFSVQVN 950 (967)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (967)
..+++++|++.|+++++++++|+.+++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777666665555555433
No 92
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=57.82 E-value=6.2 Score=36.57 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=13.1
Q ss_pred eEEeehhHHHHHHHHHHHHHHH
Q 046844 924 FFIAMSIGFAVGFGAVVSPLMF 945 (967)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~ 945 (967)
.+++++||+++++++++++++|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred EEEEEEecccHHHHHHHHHhhe
Confidence 5677777776665555444444
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.22 E-value=9.2 Score=24.30 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=6.8
Q ss_pred CCcEEECCCCCCc
Q 046844 810 SLYALNMSHNALT 822 (967)
Q Consensus 810 ~L~~L~Ls~N~l~ 822 (967)
.|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=50.61 E-value=7.4 Score=33.50 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=13.5
Q ss_pred eEEeehhHHHHHHHHHHHHHHHhh
Q 046844 924 FFIAMSIGFAVGFGAVVSPLMFSV 947 (967)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~ 947 (967)
.+++++||+++++++++++++++.
T Consensus 67 aiagi~vg~~~~v~~lv~~l~w~f 90 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLCWWF 90 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHhhee
Confidence 455666666655555555554433
No 95
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=50.51 E-value=14 Score=25.28 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=12.4
Q ss_pred EeehhHHHHHHHHHHHHHHH
Q 046844 926 IAMSIGFAVGFGAVVSPLMF 945 (967)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~ 945 (967)
+++++|+++|+++++-.+++
T Consensus 6 IaIIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFY 25 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 56777777777665544433
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.42 E-value=17 Score=22.48 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=10.5
Q ss_pred CCCCCEEeCCCCCCCc
Q 046844 115 LTRLVTLDLSGIVPIE 130 (967)
Q Consensus 115 l~~L~~L~Ls~~~~l~ 130 (967)
+++|++|++++|..++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3567777777775554
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.64 E-value=13 Score=42.17 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=36.8
Q ss_pred ccCCCCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeeccccccc
Q 046844 438 FELRNLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVV 512 (967)
Q Consensus 438 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 512 (967)
.+.+.+..+.|++|++..++.- .. -...++|+.|+|++|...-....+++..+...|++|.+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~-------sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDAL-------SSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhh-------hHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 5667788888888888765422 12 23446677777777732212222333333334555555555443
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.15 E-value=12 Score=42.53 Aligned_cols=64 Identities=25% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCccEEECcCCccCCCCCcchhccCCCCcceeecccc--cccCcCCCCC--CCCccEEeCCCCCCCCC
Q 046844 473 SQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN--LVVSLQEPYS--ISGIRFLDLHSNQLRGN 536 (967)
Q Consensus 473 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~l~~~~~--~~~L~~L~Ls~n~l~~~ 536 (967)
+.+..+.+++|++...-.-.-.....|+|+.|+|++| .+.+..+... ...|++|.+.+|++...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4455566666655422211111223356666666666 3333222221 33456666666666543
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.42 E-value=17 Score=49.61 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=15.5
Q ss_pred CCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844 713 KVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742 (967)
Q Consensus 713 ~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~ 742 (967)
+..+++|+.|+|++|+|.|.+...|+..++
T Consensus 15 F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL 44 (2740)
T TIGR00864 15 CANLCNLSEIDLSGNPFECDCGLARLPRWA 44 (2740)
T ss_pred hccCCCceEEEeeCCccccccccHHHHHHH
Confidence 333444555555555555655555554443
No 100
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=37.13 E-value=20 Score=26.43 Aligned_cols=27 Identities=4% Similarity=-0.091 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 046844 933 AVGFGAVVSPLMFSVQVNKWYNDLIYK 959 (967)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (967)
++.+.+++|++++...+++.|.+.+|.
T Consensus 9 i~iv~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 9 IFIVMGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCC
Confidence 333445566666677777778887765
No 101
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=31.98 E-value=13 Score=28.75 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=0.0
Q ss_pred EEeehhHHHHHHHHHHHHHHHhh
Q 046844 925 FIAMSIGFAVGFGAVVSPLMFSV 947 (967)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~ 947 (967)
..++++|.++|+++++.+++|..
T Consensus 11 laavIaG~Vvgll~ailLIlf~i 33 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAILLILFLI 33 (64)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777776655555444443
No 102
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=30.08 E-value=45 Score=21.28 Aligned_cols=19 Identities=37% Similarity=1.073 Sum_probs=10.6
Q ss_pred CcCCCCCCCCCCCccccee
Q 046844 17 KLSQWSSHQSSDCCDWSGV 35 (967)
Q Consensus 17 ~l~~w~~~~~~~~c~w~gv 35 (967)
.+..|.=.+..|||.|..+
T Consensus 3 ~l~~~~Cssdk~CCg~tp~ 21 (30)
T PF08093_consen 3 VLTFWRCSSDKDCCGWTPV 21 (30)
T ss_dssp C-SSSB-SSCCCCCTT--E
T ss_pred EeeceeecCCcccccCccc
Confidence 3567743456799999853
No 103
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.60 E-value=30 Score=34.14 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=5.2
Q ss_pred eEEeehhHHHHH
Q 046844 924 FFIAMSIGFAVG 935 (967)
Q Consensus 924 ~~~~~~~~~~~~ 935 (967)
.++++++|++++
T Consensus 39 I~iaiVAG~~tV 50 (221)
T PF08374_consen 39 IMIAIVAGIMTV 50 (221)
T ss_pred eeeeeecchhhh
Confidence 344444444443
No 104
>PRK10132 hypothetical protein; Provisional
Probab=28.19 E-value=38 Score=29.89 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=14.7
Q ss_pred eehhHHHHHHHHHHHHHHHh
Q 046844 927 AMSIGFAVGFGAVVSPLMFS 946 (967)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~ 946 (967)
|..+|++.|+++++|+++..
T Consensus 87 w~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56777777778888887553
No 105
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=27.12 E-value=1.5e+02 Score=25.55 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=4.6
Q ss_pred ehhHHHHHH
Q 046844 928 MSIGFAVGF 936 (967)
Q Consensus 928 ~~~~~~~~~ 936 (967)
+.||+++++
T Consensus 19 ~LVGVv~~a 27 (102)
T PF15176_consen 19 FLVGVVVTA 27 (102)
T ss_pred hHHHHHHHH
Confidence 455555543
No 106
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=25.80 E-value=23 Score=33.29 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=0.0
Q ss_pred eEEeehhHHHHHHHHHHHHHHHhhhh
Q 046844 924 FFIAMSIGFAVGFGAVVSPLMFSVQV 949 (967)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (967)
..++++||++++++++.|++++..++
T Consensus 130 tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 130 TLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp --------------------------
T ss_pred eeeeehhhHHHHHHHHhheeeEEeeh
Confidence 46788888888888888877766543
No 107
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=24.95 E-value=1.6e+02 Score=21.73 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=12.8
Q ss_pred CceeEEeehhHHHHHHHHHHHHHHHhhh
Q 046844 921 IDWFFIAMSIGFAVGFGAVVSPLMFSVQ 948 (967)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (967)
.+..|..++.+++++....+.++-+|..
T Consensus 18 id~KYa~IGtalGvaisAgFLaLKicmI 45 (61)
T PF14986_consen 18 IDIKYAIIGTALGVAISAGFLALKICMI 45 (61)
T ss_pred eeeeeeeehhHHHHHHHHHHHHHHHHHH
Confidence 4445655555554444333333434433
No 108
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.30 E-value=49 Score=45.49 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=28.5
Q ss_pred eCCCCccCCCCcccccCCCCCCEEECCCCcccc
Q 046844 649 DLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD 681 (967)
Q Consensus 649 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 681 (967)
||++|+|+.+.+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999998888889999999999999998763
No 109
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=23.00 E-value=48 Score=37.22 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=13.3
Q ss_pred eEEeehhHHHHHHHHHHHHHHHhh
Q 046844 924 FFIAMSIGFAVGFGAVVSPLMFSV 947 (967)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~ 947 (967)
.+++|.|+++++++.++|++.+|.
T Consensus 368 aIaGIsvavvvvVgglvGfLcWwf 391 (397)
T PF03302_consen 368 AIAGISVAVVVVVGGLVGFLCWWF 391 (397)
T ss_pred ceeeeeehhHHHHHHHHHHHhhhe
Confidence 455555665555555666554443
No 110
>PHA03265 envelope glycoprotein D; Provisional
Probab=22.55 E-value=67 Score=34.16 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=16.9
Q ss_pred eEEeehhHHHHHHHHHHHHHHHhhhhHHH
Q 046844 924 FFIAMSIGFAVGFGAVVSPLMFSVQVNKW 952 (967)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (967)
.++++++|.+++.++++|+++|..++|++
T Consensus 348 ~~~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 348 TFVGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred cccceEEccchhhhhhhhHHHHHHhhhhh
Confidence 46677777766656666665554433333
No 111
>PRK10404 hypothetical protein; Provisional
Probab=21.80 E-value=59 Score=28.31 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=13.4
Q ss_pred eehhHHHHHHHHHHHHHHH
Q 046844 927 AMSIGFAVGFGAVVSPLMF 945 (967)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~ 945 (967)
|-++|++.|+++++|+++.
T Consensus 81 w~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 81 WQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567777777788887743
Done!