Query 046844
Match_columns 967
No_of_seqs 1011 out of 5802
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.6E-87 1.9E-91 819.8 45.8 688 14-905 26-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.4E-69 8.2E-74 663.4 41.0 637 175-876 50-699 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-56 4.1E-61 546.4 52.8 524 193-875 91-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-55 2.7E-59 530.4 49.2 597 179-897 8-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 9.5E-52 3.2E-56 496.4 42.6 543 152-875 16-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.7E-50 9.2E-55 483.7 46.8 458 215-850 97-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-51 2.4E-55 488.8 39.2 539 151-875 14-563 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-50 9E-55 499.6 43.2 570 152-905 8-591 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-49 1.4E-53 473.4 37.4 515 248-897 33-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 7.8E-48 2.7E-52 477.5 38.2 482 172-742 70-572 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 8.3E-46 2.8E-50 441.7 35.5 501 175-877 28-538 (570)
12 4eco_A Uncharacterized protein 100.0 8.4E-47 2.9E-51 452.4 23.7 472 17-534 56-600 (636)
13 4ecn_A Leucine-rich repeat pro 100.0 1.8E-45 6.1E-50 446.6 34.4 325 33-404 315-710 (876)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-46 1.9E-50 440.8 29.3 482 223-875 26-515 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-44 1.8E-48 423.9 34.2 502 148-850 5-514 (549)
16 2z63_A TOLL-like receptor 4, v 100.0 1.3E-43 4.3E-48 422.8 37.5 268 572-895 261-533 (570)
17 4g8a_A TOLL-like receptor 4; l 100.0 6.9E-43 2.4E-47 422.5 39.7 525 175-744 52-594 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-43 5.6E-48 416.3 29.3 471 178-743 3-495 (520)
19 4eco_A Uncharacterized protein 100.0 3.7E-44 1.3E-48 429.5 20.5 467 271-870 81-600 (636)
20 4g8a_A TOLL-like receptor 4; l 100.0 9.2E-42 3.1E-46 412.6 39.0 523 223-874 52-584 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-43 1.3E-47 413.2 25.4 445 271-874 21-485 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 1.2E-42 4.1E-47 421.9 27.7 408 281-869 435-863 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-40 8.8E-45 392.2 29.3 472 174-739 30-519 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-40 1.2E-44 391.0 26.8 207 589-874 302-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 4E-39 1.4E-43 368.6 23.9 394 339-877 8-418 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 1E-38 3.4E-43 365.3 25.1 421 270-876 10-435 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 8.1E-37 2.8E-41 353.0 30.9 400 251-743 14-422 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 3.9E-36 1.3E-40 347.3 31.0 191 643-879 212-417 (455)
29 3bz5_A Internalin-J, INLJ; leu 100.0 6.3E-36 2.2E-40 342.4 25.1 357 267-737 38-394 (457)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2.8E-34 9.6E-39 328.7 27.0 347 414-876 40-393 (457)
31 1ogq_A PGIP-2, polygalacturona 100.0 5E-35 1.7E-39 318.7 16.1 259 592-902 50-312 (313)
32 1o6v_A Internalin A; bacterial 100.0 8.3E-33 2.8E-37 319.6 33.7 216 589-871 174-389 (466)
33 1ogq_A PGIP-2, polygalacturona 100.0 6.5E-35 2.2E-39 317.8 15.1 274 14-330 20-302 (313)
34 1o6v_A Internalin A; bacterial 100.0 3.5E-32 1.2E-36 314.3 35.7 346 41-457 46-391 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 1.6E-33 5.6E-38 327.1 24.7 345 476-897 14-360 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 2E-32 7E-37 317.9 25.6 321 524-895 14-335 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 5.6E-31 1.9E-35 297.1 27.2 349 18-487 3-353 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 2E-30 6.8E-35 292.6 27.3 334 415-896 44-377 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1.4E-30 4.9E-35 310.0 27.2 334 416-897 51-384 (597)
40 4fmz_A Internalin; leucine ric 100.0 3.4E-30 1.2E-34 286.0 27.4 306 438-870 41-346 (347)
41 4fmz_A Internalin; leucine ric 100.0 2.8E-29 9.5E-34 278.6 31.4 306 63-403 40-345 (347)
42 3oja_B Anopheles plasmodium-re 100.0 9.8E-30 3.4E-34 302.9 29.1 347 17-487 8-359 (597)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-29 9.9E-34 276.3 23.8 287 522-867 34-330 (332)
44 1xku_A Decorin; proteoglycan, 100.0 8.6E-29 2.9E-33 272.4 25.9 230 585-870 69-306 (330)
45 1xku_A Decorin; proteoglycan, 100.0 4.8E-28 1.6E-32 266.4 25.6 289 522-868 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-28 9.3E-33 268.5 21.7 267 542-870 33-307 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-31 9E-36 307.4 -3.9 63 343-405 4-70 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-30 7.3E-35 299.8 0.1 357 42-404 4-411 (461)
49 3ogk_B Coronatine-insensitive 100.0 1.2E-30 4.2E-35 312.0 -2.2 437 28-513 40-527 (592)
50 2z80_A TOLL-like receptor 2, v 99.9 6.9E-28 2.4E-32 267.7 16.2 274 547-875 36-319 (353)
51 4fcg_A Uncharacterized protein 99.9 2E-27 6.8E-32 260.1 17.4 225 591-869 80-313 (328)
52 2z66_A Variable lymphocyte rec 99.9 1.2E-27 4E-32 260.3 14.8 212 588-873 48-264 (306)
53 1wwl_A Monocyte differentiatio 99.9 1.1E-28 3.7E-33 268.8 6.2 245 573-872 48-311 (312)
54 2z66_A Variable lymphocyte rec 99.9 3.4E-27 1.2E-31 256.6 17.9 200 525-731 11-213 (306)
55 4fcg_A Uncharacterized protein 99.9 2.6E-27 8.9E-32 259.2 17.0 256 18-331 47-313 (328)
56 2z80_A TOLL-like receptor 2, v 99.9 1.3E-27 4.4E-32 265.6 12.2 279 522-850 32-318 (353)
57 3zyi_A Leucine-rich repeat-con 99.9 5.1E-26 1.8E-30 261.5 25.3 231 592-872 75-305 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 5.3E-26 1.8E-30 260.4 22.7 229 593-871 65-293 (440)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.7E-31 249.0 16.0 229 595-875 14-243 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-25 8.7E-30 261.6 26.6 194 474-730 41-234 (622)
61 3g06_A SSPH2 (leucine-rich rep 99.9 6.5E-25 2.2E-29 258.1 28.9 263 500-876 41-303 (622)
62 3o53_A Protein LRIM1, AGAP0063 99.9 9.9E-28 3.4E-32 261.8 3.7 264 547-875 15-281 (317)
63 3zyi_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 254.3 23.2 250 593-895 55-305 (452)
64 1wwl_A Monocyte differentiatio 99.9 5.5E-27 1.9E-31 255.3 7.1 248 543-848 44-311 (312)
65 3zyj_A Leucine-rich repeat-con 99.9 5.6E-25 1.9E-29 251.9 23.7 250 593-895 44-294 (440)
66 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-25 9.3E-30 238.8 19.3 234 573-856 37-271 (285)
67 3ogk_B Coronatine-insensitive 99.9 3.9E-27 1.3E-31 281.7 3.1 408 86-536 67-528 (592)
68 3oja_A Leucine-rich immune mol 99.9 9.3E-26 3.2E-30 260.5 10.2 82 785-870 169-250 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 2.8E-24 9.4E-29 229.8 20.0 228 596-876 11-243 (276)
70 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-25 8.9E-30 242.6 10.7 240 573-874 15-255 (317)
71 3oja_A Leucine-rich immune mol 99.9 3.2E-25 1.1E-29 256.1 11.4 245 556-865 21-270 (487)
72 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.9E-27 216.2 22.7 92 27-125 2-94 (270)
73 2o6q_A Variable lymphocyte rec 99.9 9.1E-23 3.1E-27 217.0 21.9 206 593-874 17-222 (270)
74 2p1m_B Transport inhibitor res 99.9 1.6E-26 5.4E-31 276.6 -8.2 435 28-486 33-519 (594)
75 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.5E-28 221.5 15.4 204 589-876 38-241 (272)
76 3rfs_A Internalin B, repeat mo 99.9 3E-23 1E-27 220.9 15.4 227 543-857 20-246 (272)
77 2z62_A TOLL-like receptor 4, v 99.9 1.2E-22 4.1E-27 217.0 19.4 212 593-850 29-241 (276)
78 4glp_A Monocyte differentiatio 99.9 1.2E-23 4.2E-28 228.7 11.4 232 592-871 64-308 (310)
79 1p9a_G Platelet glycoprotein I 99.9 6.8E-22 2.3E-26 211.9 20.3 199 619-871 11-209 (290)
80 3m19_A Variable lymphocyte rec 99.9 5.7E-22 1.9E-26 208.3 17.5 182 619-874 15-196 (251)
81 1p9a_G Platelet glycoprotein I 99.9 2.8E-21 9.6E-26 207.1 22.6 212 521-743 10-221 (290)
82 2p1m_B Transport inhibitor res 99.9 1E-24 3.6E-29 260.8 -5.7 427 41-484 66-542 (594)
83 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.4E-28 231.2 5.5 260 573-874 3-301 (362)
84 2ca6_A RAN GTPase-activating p 99.9 1.8E-23 6E-28 235.3 2.3 249 583-874 23-320 (386)
85 2ast_B S-phase kinase-associat 99.9 1E-22 3.4E-27 224.7 5.5 238 26-281 33-282 (336)
86 2xwt_C Thyrotropin receptor; s 99.9 7.3E-22 2.5E-26 205.9 11.4 196 619-867 32-236 (239)
87 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.1E-27 224.6 5.6 239 573-854 27-305 (362)
88 2ast_B S-phase kinase-associat 99.8 3E-22 1E-26 220.8 5.9 247 573-876 52-312 (336)
89 3m19_A Variable lymphocyte rec 99.8 3.7E-20 1.3E-24 194.4 20.6 187 546-742 18-205 (251)
90 2xwt_C Thyrotropin receptor; s 99.8 5E-21 1.7E-25 199.6 13.3 197 592-843 31-236 (239)
91 1h6u_A Internalin H; cell adhe 99.8 2E-20 6.8E-25 202.7 18.2 82 784-871 150-231 (308)
92 1h6u_A Internalin H; cell adhe 99.8 1.2E-20 4E-25 204.4 16.3 207 575-848 26-232 (308)
93 3cvr_A Invasion plasmid antige 99.8 5.2E-20 1.8E-24 213.7 17.5 191 591-858 58-255 (571)
94 2ca6_A RAN GTPase-activating p 99.8 9.8E-22 3.3E-26 221.0 2.5 228 83-333 23-288 (386)
95 3cvr_A Invasion plasmid antige 99.8 3.7E-20 1.3E-24 214.9 15.4 130 573-730 64-193 (571)
96 4glp_A Monocyte differentiatio 99.8 5.3E-20 1.8E-24 199.9 15.1 225 150-380 66-307 (310)
97 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.5E-24 201.1 17.3 222 592-867 30-256 (350)
98 2o6s_A Variable lymphocyte rec 99.8 6.4E-20 2.2E-24 186.7 14.1 133 593-730 29-161 (208)
99 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 185.0 14.1 81 789-876 104-184 (208)
100 4ay9_X Follicle-stimulating ho 99.8 2.7E-19 9.4E-24 197.7 15.5 239 587-880 5-246 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-18 1.4E-22 174.4 17.3 146 593-743 33-179 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 4.7E-18 1.6E-22 174.0 17.2 86 789-874 85-170 (220)
103 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7E-23 185.0 14.5 188 595-871 27-214 (291)
104 2v9t_B SLIT homolog 2 protein 99.8 8.1E-18 2.8E-22 172.3 17.0 146 592-742 32-177 (220)
105 2xot_A Amphoterin-induced prot 99.7 4.5E-18 1.6E-22 188.7 14.4 178 595-848 21-204 (361)
106 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.5E-22 170.0 16.8 80 621-704 14-93 (220)
107 1m9s_A Internalin B; cell inva 99.7 3.9E-18 1.3E-22 200.4 13.5 192 592-848 21-212 (605)
108 3e6j_A Variable lymphocyte rec 99.7 2.3E-17 7.8E-22 170.2 17.6 80 621-704 22-101 (229)
109 2xot_A Amphoterin-induced prot 99.7 7.9E-18 2.7E-22 186.7 14.7 127 573-705 23-150 (361)
110 3e6j_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 167.6 18.8 137 592-734 40-176 (229)
111 1h6t_A Internalin B; cell adhe 99.7 8.3E-18 2.9E-22 180.3 13.0 188 573-849 29-216 (291)
112 1m9s_A Internalin B; cell inva 99.7 6.3E-18 2.2E-22 198.6 12.8 221 573-858 26-259 (605)
113 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.8E-21 160.0 14.9 141 595-742 11-151 (192)
114 1dce_A Protein (RAB geranylger 99.7 1.8E-19 6.1E-24 210.6 -7.5 89 784-875 462-551 (567)
115 1dce_A Protein (RAB geranylger 99.7 5.8E-19 2E-23 206.3 -3.9 193 619-864 350-567 (567)
116 1xeu_A Internalin C; cellular 99.7 2.9E-17 9.9E-22 173.1 9.0 168 619-872 20-187 (263)
117 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6E-22 200.1 7.4 192 597-847 206-405 (727)
118 4ezg_A Putative uncharacterize 99.7 5E-17 1.7E-21 163.5 9.5 155 640-871 41-195 (197)
119 4b8c_D Glucose-repressible alc 99.7 5.1E-18 1.7E-22 204.8 2.6 224 592-874 173-408 (727)
120 1xeu_A Internalin C; cellular 99.7 5.1E-17 1.7E-21 171.2 9.5 171 590-848 17-187 (263)
121 4ezg_A Putative uncharacterize 99.7 2.7E-16 9.2E-21 158.1 13.4 151 619-847 45-195 (197)
122 1w8a_A SLIT protein; signaling 99.7 6.1E-17 2.1E-21 161.9 8.3 93 783-875 52-144 (192)
123 2wfh_A SLIT homolog 2 protein 99.6 1.2E-15 4E-20 152.5 14.2 140 595-743 13-152 (193)
124 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 142.8 15.7 135 593-735 8-142 (177)
125 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4E-19 142.0 11.7 84 787-870 73-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.5 8.6E-15 2.9E-19 139.8 8.9 129 591-726 16-149 (149)
127 2wfh_A SLIT homolog 2 protein 99.5 4.3E-14 1.5E-18 141.1 14.2 110 592-705 31-140 (193)
128 2ell_A Acidic leucine-rich nuc 99.5 1.3E-14 4.5E-19 141.6 10.3 133 591-730 23-160 (168)
129 3sb4_A Hypothetical leucine ri 99.5 4E-15 1.4E-19 162.8 7.1 102 591-697 225-327 (329)
130 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 3.9E-19 138.9 9.5 80 786-865 65-148 (149)
131 2o6r_A Variable lymphocyte rec 99.5 5.4E-14 1.8E-18 138.6 12.0 91 784-874 51-141 (177)
132 3sb4_A Hypothetical leucine ri 99.5 2.3E-14 8E-19 156.6 7.8 272 174-456 24-312 (329)
133 3g39_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 131.7 13.4 117 619-741 10-127 (170)
134 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-13 4.3E-18 135.7 10.1 133 588-730 15-153 (176)
135 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.7E-20 153.8 -6.5 81 785-869 93-184 (198)
136 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.6E-17 128.4 13.5 108 621-734 15-122 (174)
137 1a9n_A U2A', U2A'; complex (nu 99.4 5.1E-13 1.7E-17 131.3 10.6 64 805-870 84-153 (176)
138 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6E-20 152.2 -7.3 151 644-847 19-186 (198)
139 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 126.6 11.5 108 593-706 10-117 (170)
140 4fdw_A Leucine rich hypothetic 99.4 1.6E-11 5.6E-16 136.8 21.2 248 217-511 130-382 (401)
141 2r9u_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 124.4 12.0 107 594-706 14-120 (174)
142 4fdw_A Leucine rich hypothetic 99.3 1.5E-11 5.2E-16 137.1 18.1 80 785-867 300-380 (401)
143 4fs7_A Uncharacterized protein 99.3 9.1E-11 3.1E-15 131.5 19.8 78 619-700 298-375 (394)
144 4fs7_A Uncharacterized protein 99.3 1E-10 3.4E-15 131.2 20.1 311 170-509 66-376 (394)
145 2ifg_A High affinity nerve gro 99.2 4.2E-11 1.4E-15 131.9 12.4 116 622-743 12-129 (347)
146 3un9_A NLR family member X1; l 99.2 9.6E-13 3.3E-17 145.3 -1.6 50 804-853 206-259 (372)
147 3un9_A NLR family member X1; l 99.2 2.1E-12 7.1E-17 142.6 0.3 88 785-872 155-254 (372)
148 2ifg_A High affinity nerve gro 99.1 2.9E-10 1E-14 125.1 10.6 89 783-872 29-118 (347)
149 4gt6_A Cell surface protein; l 99.0 1.1E-08 3.8E-13 114.5 22.8 263 431-729 127-390 (394)
150 4gt6_A Cell surface protein; l 99.0 1.9E-08 6.5E-13 112.5 22.8 107 588-703 284-390 (394)
151 2ra8_A Uncharacterized protein 98.7 5.6E-09 1.9E-13 114.0 3.1 38 318-355 278-320 (362)
152 2ra8_A Uncharacterized protein 98.6 1.8E-08 6E-13 110.1 5.7 187 41-237 107-321 (362)
153 4h09_A Hypothetical leucine ri 98.6 2.5E-06 8.4E-11 94.8 21.8 83 363-449 236-318 (379)
154 4h09_A Hypothetical leucine ri 98.5 6.3E-06 2.1E-10 91.5 22.6 201 248-457 136-348 (379)
155 3rw6_A Nuclear RNA export fact 98.3 3.6E-07 1.2E-11 94.3 5.4 78 784-863 169-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 5.3E-07 1.8E-11 88.6 6.2 115 144-258 32-162 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 5.3E-07 1.8E-11 88.6 5.7 93 144-236 61-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 1.9E-07 6.3E-12 96.4 2.1 84 790-875 148-238 (267)
159 3e4g_A ATP synthase subunit S, 97.9 6.4E-06 2.2E-10 78.5 4.5 85 92-186 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1.3E-05 4.4E-10 76.4 4.2 83 176-258 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0007 2.4E-08 65.8 6.7 118 141-258 34-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0017 5.7E-08 63.1 6.5 93 88-184 37-135 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0043 1.5E-07 56.2 6.6 55 789-845 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0075 2.6E-07 54.6 7.1 56 622-680 12-68 (130)
165 2k1k_A Ephrin type-A receptor 56.6 5.3 0.00018 26.6 1.8 19 926-944 14-32 (38)
166 2l9u_A Receptor tyrosine-prote 55.6 12 0.0004 23.7 3.0 23 928-950 12-34 (40)
167 2lz0_A Uncharacterized protein 54.3 21 0.00071 29.9 5.6 43 633-676 10-52 (100)
168 2knc_B Integrin beta-3; transm 53.9 10 0.00035 30.1 3.3 30 928-957 12-48 (79)
169 2lz0_A Uncharacterized protein 50.3 14 0.00046 31.0 3.8 49 652-701 5-53 (100)
170 2klu_A T-cell surface glycopro 33.5 21 0.0007 26.7 1.9 23 928-950 12-35 (70)
171 2ks1_B Epidermal growth factor 27.4 24 0.00082 24.3 1.3 9 928-936 13-21 (44)
172 3ox7_P MH027; urokinase-type p 21.6 28 0.00096 19.1 0.6 11 26-36 4-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-87 Score=819.84 Aligned_cols=688 Identities=30% Similarity=0.450 Sum_probs=450.5
Q ss_pred CCCCcCCCCCCCCCCCcccceeEeCCCCcEEEEECCCCCcccc---cCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccC
Q 046844 14 PSTKLSQWSSHQSSDCCDWSGVRCDEAGHVIGLDLSWEPIIGG---LENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGN 90 (967)
Q Consensus 14 ~~~~l~~w~~~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~ 90 (967)
||.++++| +.++|||+|+||+|+ .+||++|+|++..+.|. + ++++.++++|++++++.+.+. .+|+.+++
T Consensus 26 ~~~~l~~W--~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l--~~~l~~L~~L~~l~~~~~~~~--~l~~~~~~ 98 (768)
T 3rgz_A 26 DKNLLPDW--SSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAV--SSSLLSLTGLESLFLSNSHIN--GSVSGFKC 98 (768)
T ss_dssp CTTSSTTC--CTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHH--HHHTTTCTTCCEEECTTSCEE--ECCCCCCC
T ss_pred CcccccCC--CCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCcc--ChhHhccCcccccCCcCCCcC--CCchhhcc
Confidence 44489999 677899999999998 68999999999999988 7 678999999999999998875 46788999
Q ss_pred CCCCCEEeCCCCCCCccCCh--hccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHH
Q 046844 91 LTNLTYLNLSQGGFAGEIPT--EISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWC 168 (967)
Q Consensus 91 l~~L~~L~Ls~~~~~~~lp~--~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 168 (967)
+++|++|+|++|.+.+.+|. .++++++|++|++++|..
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l---------------------------------------- 138 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL---------------------------------------- 138 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE----------------------------------------
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc----------------------------------------
Confidence 99999999999999998988 889999999999887521
Q ss_pred HHhcCCCCccEEEccCCCCCCCCcccc-cCCCCCCEEEccCCCCCCcchhh---hcCCCCCCEEeccCCCCCCccchhcc
Q 046844 169 KALSFLPNLQVLSLSGCDLSGPINHYL-AKSRSLSVIRLHYNYGLSSGTEF---LAHLTNLKALDLSECGLQGKFPEKIL 244 (967)
Q Consensus 169 ~~l~~l~~L~~L~Ls~~~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (967)
.+..|..+ .++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+. .
T Consensus 139 -------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~ 197 (768)
T 3rgz_A 139 -------------------DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--S 197 (768)
T ss_dssp -------------------ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--T
T ss_pred -------------------CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--c
Confidence 11111111 33444444444444444444444 45566666666666666544432 4
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 046844 245 HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM 324 (967)
Q Consensus 245 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 324 (967)
.+++|++|++++|.+.. ..+.+..+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|.. .+++|++|
T Consensus 198 ~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L 274 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFST-GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274 (768)
T ss_dssp TCTTCCEEECCSSCCCS-CCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEE
T ss_pred cCCcCCEEECcCCcCCC-CCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEE
Confidence 55666666666655432 2223555566666666666666666666666666666766666666555543 56666666
Q ss_pred EccCccccccCcccccc--CcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChh-ccCCCCCCEEeCcCC
Q 046844 325 DFSSNHFFGPIPSLHKS--RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRS-LFLLPNLEMLQLSNN 401 (967)
Q Consensus 325 ~L~~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n 401 (967)
++++|.+++.+|..... ++|++|++++|.+++.+|.. ++.+++|++|++++|.+.+.+|.. +..+++|++|++++|
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 66666666555543321 35666666666555555554 555555666666655555555543 555555555555555
Q ss_pred cCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCC-CCCEEECCCCcccccccCCCCCccCCC-CCC--CCCccE
Q 046844 402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELR-NLYTLDLSSNKFSRLKLASSKPRAIPI-LKN--QSQLSV 477 (967)
Q Consensus 402 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~--~~~L~~ 477 (967)
++.+ .+|..+ ..++ +|++|++++|+++ +.+|. +.. +++|++
T Consensus 354 ~l~~-------------------------~~p~~l-~~l~~~L~~L~Ls~N~l~---------~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 354 EFSG-------------------------ELPESL-TNLSASLLTLDLSSNNFS---------GPILPNLCQNPKNTLQE 398 (768)
T ss_dssp EEEE-------------------------CCCTTH-HHHTTTCSEEECCSSEEE---------EECCTTTTCSTTCCCCE
T ss_pred ccCc-------------------------cccHHH-HhhhcCCcEEEccCCCcC---------CCcChhhhhcccCCccE
Confidence 5544 344433 3333 5666666666554 22222 222 456666
Q ss_pred EECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCC
Q 046844 478 LDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSI 557 (967)
Q Consensus 478 L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i 557 (967)
|++++|++++.+|..+.... +|++|++++|++++.+|..
T Consensus 399 L~L~~n~l~~~~p~~l~~l~------------------------~L~~L~Ls~N~l~~~~p~~----------------- 437 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCS------------------------ELVSLHLSFNYLSGTIPSS----------------- 437 (768)
T ss_dssp EECCSSEEEEECCGGGGGCT------------------------TCCEEECCSSEEESCCCGG-----------------
T ss_pred EECCCCccccccCHHHhcCC------------------------CCCEEECcCCcccCcccHH-----------------
Confidence 66666666666665554321 2333333333333222210
Q ss_pred CcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCC
Q 046844 558 PADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDT 637 (967)
Q Consensus 558 ~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~ 637 (967)
+. .++.++. |++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+. +|++|+|++|++++.+|..
T Consensus 438 ---l~-~l~~L~~--L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 438 ---LG-SLSKLRD--LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp ---GG-GCTTCCE--EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCCSCCCGG
T ss_pred ---Hh-cCCCCCE--EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC--CCCEEEccCCccCCcCChH
Confidence 00 0111111 33333444444445555566666666666666666666655554 6666666666666666655
Q ss_pred CCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCC-c--------------
Q 046844 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN-N-------------- 702 (967)
Q Consensus 638 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~-------------- 702 (967)
|..+++|++|+|++|++++.+|..+..+++|++||+++|+++|.+|.++.....+..+++..+ +
T Consensus 510 -~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 510 -IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp -GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred -HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 556666666666666666666666666666666666666666666666655544443333221 0
Q ss_pred -------cceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcc
Q 046844 703 -------FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKG 775 (967)
Q Consensus 703 -------l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (967)
+.|.. +..+..++.++.++++.|.+.|.+|.
T Consensus 589 ~~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~~g~~~~---------------------------------------- 626 (768)
T 3rgz_A 589 GAGNLLEFQGIR--SEQLNRLSTRNPCNITSRVYGGHTSP---------------------------------------- 626 (768)
T ss_dssp SSEEEEECTTCC--GGGGGGGGGTCCSCTTSCEEEEECCC----------------------------------------
T ss_pred cccccccccccc--chhhhccccccccccccceecccCch----------------------------------------
Confidence 11111 22333334444445555555544442
Q ss_pred ceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccC
Q 046844 776 IEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLAS 855 (967)
Q Consensus 776 ~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 855 (967)
....++.++.||||+|+++|.||.+|+.++.|+.||||+|+++|.||..|+++++|++||||+|+++|.||..+++
T Consensus 627 ----~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 627 ----TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ----SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ----hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 2235778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCCCCCCCCCCCC
Q 046844 856 LNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQAR 905 (967)
Q Consensus 856 l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~ 905 (967)
++.|++||+|+|+|+|+||...++.+|...+|.||+++||.|+. .|...
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 99999999999999999999999999999999999999999987 78643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-69 Score=663.38 Aligned_cols=637 Identities=29% Similarity=0.371 Sum_probs=461.3
Q ss_pred CCccEEEccCCCCCCC---CcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccch--hccCCCCC
Q 046844 175 PNLQVLSLSGCDLSGP---INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPE--KILHVPTL 249 (967)
Q Consensus 175 ~~L~~L~Ls~~~l~~~---~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L 249 (967)
.+++.|+|+++.+.+. ++..+.++++|+.++++.+.+.. .|..++.+++|++|+|++|.+.+.+|. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 4677777777777776 66677777777777777665432 345677778888888888887777777 77778888
Q ss_pred CEEeccCCCCCCCCCCCC-CCCCCCCEEEccCCCCCCCcccc---ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEE
Q 046844 250 ETLDLSINQLLQGSLPNF-PKNSSLRDLILSHTGLSGTLPDS---IGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMD 325 (967)
Q Consensus 250 ~~L~L~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 325 (967)
++|++++|.+.......+ ..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEE
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEE
Confidence 888887776643333332 55777777777777777666655 66777777777777777665443 6677777777
Q ss_pred ccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcc
Q 046844 326 FSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFEN 405 (967)
Q Consensus 326 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 405 (967)
+++|.+.+.+|.+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+.+.+|.. .+++|++|++++|++.+
T Consensus 207 Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred CcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence 777777766666545557777777777776666655 667777777777777776655544 56677777777777766
Q ss_pred ccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCC--CCCCCCccEEECcCC
Q 046844 406 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI--LKNQSQLSVLDISDN 483 (967)
Q Consensus 406 ~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~--l~~~~~L~~L~Ls~n 483 (967)
.+|......+++|+.|++++|.+++.+|..+ ..+++|++|++++|+++ +.+|. +..+++|++|++++|
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~---------~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFS---------GELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEE---------EECCHHHHTTCTTCCEEECCSS
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCccc---------CcCCHHHHhcCCCCCEEeCcCC
Confidence 6655444444666666666666665555544 66666666666666665 23332 555666666666666
Q ss_pred ccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhc
Q 046844 484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGN 563 (967)
Q Consensus 484 ~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~ 563 (967)
++++.+|..+.... ++|++|++++|++++.+|..... .
T Consensus 354 ~l~~~~p~~l~~l~-----------------------~~L~~L~Ls~N~l~~~~~~~~~~-------------------~ 391 (768)
T 3rgz_A 354 EFSGELPESLTNLS-----------------------ASLLTLDLSSNNFSGPILPNLCQ-------------------N 391 (768)
T ss_dssp EEEECCCTTHHHHT-----------------------TTCSEEECCSSEEEEECCTTTTC-------------------S
T ss_pred ccCccccHHHHhhh-----------------------cCCcEEEccCCCcCCCcChhhhh-------------------c
Confidence 66666665554432 14666666666665544422110 0
Q ss_pred cccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCC
Q 046844 564 FMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDC 643 (967)
Q Consensus 564 ~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~ 643 (967)
....++. |++++|.+++.+|..++.+++|++|++++|++++.+|..+..+. +|+.|++++|.+++.+|.. |..++
T Consensus 392 ~~~~L~~--L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~-~~~l~ 466 (768)
T 3rgz_A 392 PKNTLQE--LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS--KLRDLKLWLNMLEGEIPQE-LMYVK 466 (768)
T ss_dssp TTCCCCE--EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--TCCEEECCSSCCCSCCCGG-GGGCT
T ss_pred ccCCccE--EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC--CCCEEECCCCcccCcCCHH-HcCCC
Confidence 0223333 77788888888888999999999999999999999999988876 9999999999999999988 88899
Q ss_pred cccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEe
Q 046844 644 GLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVD 723 (967)
Q Consensus 644 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ld 723 (967)
+|++|++++|++++.+|..|.++++|++|++++|++++.+|.+++++++|++|+|++|+++|.+ |..+..+++|+.||
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLD 544 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEE
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred cCCccCcCcCcHHHHHHHhhcccC--CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCC
Q 046844 724 LACNKFSGRLSQKWLLTMMVAETK--SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI 801 (967)
Q Consensus 724 ls~N~l~g~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~i 801 (967)
+++|+++|.+|..++......... ......+....................+........+..+..++++.|.++|.+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 999999999997764211000000 000000000000000000000011122222222233455667889999999999
Q ss_pred cccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844 802 PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 802 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 876 (967)
|..++.++.|+.||||+|+++|.||..|+++++|+.|||++|+++|.||..+++++.|++||+|+|+++|.||..
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-56 Score=546.42 Aligned_cols=524 Identities=21% Similarity=0.226 Sum_probs=325.2
Q ss_pred ccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCC
Q 046844 193 HYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSS 272 (967)
Q Consensus 193 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 272 (967)
..|+++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|.. +..+++
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------------------------~~~l~~ 146 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT------------------------QVQLEN 146 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS------------------------SSCCTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh------------------------hccccc
Confidence 34555555555555555554444444555555555555555544444444 444555
Q ss_pred CCEEEccCCCCCCCcccccc--CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCc----cccccCcccE
Q 046844 273 LRDLILSHTGLSGTLPDSIG--NLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP----SLHKSRNLNN 346 (967)
Q Consensus 273 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~L~~ 346 (967)
|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+++|+.+++.++.+..... ......+|+.
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence 55555555556555554443 45677777777777777777777777777777777776543211 1122346777
Q ss_pred EECCCCCCCCCCChhhhhcccC--ccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEee
Q 046844 347 LDLSFNNLSGGISSTFWEQLLN--LQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLS 424 (967)
Q Consensus 347 L~L~~n~l~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 424 (967)
|++++|.+.+..+.. +..++. |++|++++|.+++..|..+..+++|++|++++|++.+..+.
T Consensus 227 L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------- 290 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH--------------- 290 (680)
T ss_dssp EECTTSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT---------------
T ss_pred EEccCCcccccChhH-hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh---------------
Confidence 777777777655555 555544 77777777777766666777777777777777766643322
Q ss_pred CCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCC--CCCCCCCccEEECcCCccCCCCCcchhccCCCCcc
Q 046844 425 GNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIP--ILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLK 502 (967)
Q Consensus 425 ~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip--~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~ 502 (967)
.|..+++|+.|++++|....- ........++ .+..+++|++|++++|++++..+..+..
T Consensus 291 -----------~~~~l~~L~~L~L~~~~~~~~-~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------- 351 (680)
T 1ziw_A 291 -----------SLHGLFNVRYLNLKRSFTKQS-ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG------- 351 (680)
T ss_dssp -----------TTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT-------
T ss_pred -----------hhcCCCCccEEeccchhhhcc-cccccccccChhhcccCCCCCEEECCCCccCCCChhHhcc-------
Confidence 224555555555554432200 0000000111 1556667777777777776655554433
Q ss_pred eeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccc
Q 046844 503 FLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG 582 (967)
Q Consensus 503 ~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~ 582 (967)
+++|++|++++|.+... .++...+.
T Consensus 352 -----------------l~~L~~L~Ls~n~~~~~-------------------~l~~~~f~------------------- 376 (680)
T 1ziw_A 352 -----------------LINLKYLSLSNSFTSLR-------------------TLTNETFV------------------- 376 (680)
T ss_dssp -----------------CTTCCEEECTTCBSCCC-------------------EECTTTTG-------------------
T ss_pred -----------------ccCCcEEECCCCchhhh-------------------hcchhhhc-------------------
Confidence 23444444444443211 00000000
Q ss_pred cCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCccc
Q 046844 583 VIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKS 662 (967)
Q Consensus 583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~ 662 (967)
-...++|+.|++++|++++..|..+..+. +|+.|++++|.+++.+|...|.++++|++|++++|++++..+..
T Consensus 377 -----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 449 (680)
T 1ziw_A 377 -----SLAHSPLHILNLTKNKISKIESDAFSWLG--HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449 (680)
T ss_dssp -----GGTTSCCCEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred -----ccccCcCceEECCCCCCCeEChhhhhCCC--CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhh
Confidence 00123566666666666655555555544 66666666666666666544666667777777777776666666
Q ss_pred ccCCCCCCEEECCCCccc--cccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHH
Q 046844 663 LANCNMLQVLDLRSNYIS--DNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLT 740 (967)
Q Consensus 663 ~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~ 740 (967)
|..+++|+.|++++|.++ +.+|.+|.++++|++|++++|++++.. +..+..+++|+.||+++|++++..+..+
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--- 524 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHAN--- 524 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCGGGGSTTS---
T ss_pred hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCccccchhhc---
Confidence 777777777777777665 456666777777777777777776654 5556677777777777777654221000
Q ss_pred HhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCC
Q 046844 741 MMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA 820 (967)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~ 820 (967)
.+........++.|+.|||++|+++...+..|+.+++|+.|||++|+
T Consensus 525 ---------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 525 ---------------------------------PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp ---------------------------------TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------------------cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 00001112356788999999999985444569999999999999999
Q ss_pred CcccCCccccCCCCCCeEeCcCccccccCCcccc-CCCCCCeEEccCCccccCCCC
Q 046844 821 LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLA-SLNFLSVLNLSYNNLVGKIPT 875 (967)
Q Consensus 821 l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~l~ls~N~l~g~ip~ 875 (967)
+++..|..|.++++|+.|||++|++++.+|..+. .++.|+.+++++|.+.+..+.
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9987777889999999999999999999988887 789999999999999998774
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.8e-55 Score=530.38 Aligned_cols=597 Identities=21% Similarity=0.201 Sum_probs=394.7
Q ss_pred EEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCC
Q 046844 179 VLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQ 258 (967)
Q Consensus 179 ~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 258 (967)
.++.+++.++. +|..+. +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 44555555543 333332 566666666666666666666667777777777777766666666677777777777776
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccc
Q 046844 259 LLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSL 338 (967)
Q Consensus 259 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 338 (967)
+.......|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 65554445666777777777777776666667777777777777777777666667777777777777777766554432
Q ss_pred c---ccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhcc---CCCCCCEEeCcCCcCccccccccc
Q 046844 339 H---KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLF---LLPNLEMLQLSNNQFENQLPEISN 412 (967)
Q Consensus 339 ~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~ 412 (967)
+ ...+|++|++++|.+.+..+.. +..+++|+.+++.++.+.+.....+. ..++|+.|++++|.+.+..+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~--- 240 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT--- 240 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT---
T ss_pred hhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh---
Confidence 2 2346666666666666544444 56666666666666655422211111 234555555555555543322
Q ss_pred cCCCcccEEEeeCCcCCCCCChhhhccCC--CCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEECcCCccCCCC
Q 046844 413 VSSSVLFDLDLSGNRLEGPVPISIFFELR--NLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEV 489 (967)
Q Consensus 413 ~~~~~L~~L~l~~n~l~~~i~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~ 489 (967)
. |..++ +|++|++++|+++.+. |. +..+++|++|++++|++++..
T Consensus 241 ----------------------~-~~~l~~~~L~~L~Ls~n~l~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 241 ----------------------T-FLGLKWTNLTMLDLSYNNLNVVG---------NDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp ----------------------T-TGGGGGSCCCEEECTTSCCCEEC---------TTTTTTCTTCCEEECCSCCBSEEC
T ss_pred ----------------------H-hhccCcCCCCEEECCCCCcCccC---------cccccCcccccEeeCCCCccCccC
Confidence 1 12222 2444444444443221 11 344444444444444444444
Q ss_pred CcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccc
Q 046844 490 PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETE 569 (967)
Q Consensus 490 ~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~ 569 (967)
|..+... ++|+.|++++|...+.++. ..+..++...+..++.++
T Consensus 289 ~~~~~~l------------------------~~L~~L~L~~~~~~~~~~~------------~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 289 SHSLHGL------------------------FNVRYLNLKRSFTKQSISL------------ASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp TTTTTTC------------------------TTCCEEECTTCBCCC------------------CCEECTTTTTTCTTCC
T ss_pred hhhhcCC------------------------CCccEEeccchhhhccccc------------ccccccChhhcccCCCCC
Confidence 3333221 1222333322222211110 000000000111122333
Q ss_pred eeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCC-CC-cccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccE
Q 046844 570 YFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT-IP-ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQI 647 (967)
Q Consensus 570 ~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~-~p-~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 647 (967)
. +++++|.+.+..+..+..+++|++|++++|.+++. ++ ..+.....++|+.|++++|++++..|.. |..+++|++
T Consensus 333 ~--L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 409 (680)
T 1ziw_A 333 H--LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEV 409 (680)
T ss_dssp E--EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTTCCE
T ss_pred E--EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCCCCE
Confidence 3 55566666666667788899999999999986542 22 2233222238999999999999766766 999999999
Q ss_pred EeCCCCccCCCCc-ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCC
Q 046844 648 LDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC 726 (967)
Q Consensus 648 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~ 726 (967)
|++++|++++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.+++.-..|..+..+++|+.||+++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 9999999997666 789999999999999999999999999999999999999999985433488999999999999999
Q ss_pred ccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCC-----
Q 046844 727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPI----- 801 (967)
Q Consensus 727 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~i----- 801 (967)
|++++..|..+ ..++.|+.|++++|++++..
T Consensus 490 N~l~~i~~~~~--------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 490 NNIANINDDML--------------------------------------------EGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp SCCCCCCTTTT--------------------------------------------TTCTTCCEEECCSSCCGGGGSTTST
T ss_pred CCCCcCChhhh--------------------------------------------ccccccCEEeCCCCCccccchhhcc
Confidence 99986554221 24678999999999998642
Q ss_pred ---cccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCC-
Q 046844 802 ---PVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST- 877 (967)
Q Consensus 802 ---p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~- 877 (967)
+..|+.+++|++|+|++|+++...+..|+++++|+.|||++|++++..|..+.+++.|+.|++++|++++..|...
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 2348999999999999999995444579999999999999999998888888999999999999999999777432
Q ss_pred -cCCccCCCccCCCCCCCCCC
Q 046844 878 -QLQSFSPTSYEGNKGLYGPP 897 (967)
Q Consensus 878 -~~~~~~~~~~~gn~~lcg~~ 897 (967)
.+..+....+.|||..|..+
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCCC
T ss_pred ccccccCEEEccCCCcccCCc
Confidence 24445556678898887643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.5e-52 Score=496.38 Aligned_cols=543 Identities=18% Similarity=0.168 Sum_probs=343.7
Q ss_pred EEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEecc
Q 046844 152 ELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLS 231 (967)
Q Consensus 152 ~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 231 (967)
.++.++..+...+..+ -+.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 16 ~~~c~~~~l~~iP~~l------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL------PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp EEECTTSCCSSCCTTS------CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred eEECCCCCcccCcCCC------CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 4455555554443221 1367888888888887777788888888888888888887778888888888888888
Q ss_pred CCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCC
Q 046844 232 ECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI 311 (967)
Q Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 311 (967)
+|.+++..|..|+++++|++|++++|.+.......+..+++|++|++++|.+.+.....+..+++|++|++++|.+++..
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 88888777888888888888888888876655566777888888888888887644344445888888888888887766
Q ss_pred CccccCCCCCc--EEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccC
Q 046844 312 PPSMANLTQLF--HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389 (967)
Q Consensus 312 ~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 389 (967)
+..+..+++|+ +|++++|.+.+..+..+...+|++|++++|. .++.. +..+.++....+....+.
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~-~~~l~~~~l~~l~~~~~~--------- 236 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVI-FKGLKNSTIQSLWLGTFE--------- 236 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHH-HHHTTTCEEEEEECCCCT---------
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHH-hhhccccchhheechhhc---------
Confidence 77777888887 7788888887777766666677888887775 22332 445554444333322211
Q ss_pred CCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCC-
Q 046844 390 LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPI- 468 (967)
Q Consensus 390 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~- 468 (967)
.+....+....+.+ .....++.|++++|.++ .++...|..+++|++|++++|+++. +|.
T Consensus 237 --~~~~~~i~~~~~~~-------l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----------lp~~ 296 (606)
T 3t6q_A 237 --DMDDEDISPAVFEG-------LCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSE----------LPSG 296 (606)
T ss_dssp --TSCCCCCCGGGGGG-------GGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSC----------CCSS
T ss_pred --cccccccChhHhch-------hhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccCC----------CChh
Confidence 11111111111110 00113555555555554 3333333555555555555554432 122
Q ss_pred CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceee
Q 046844 469 LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVD 548 (967)
Q Consensus 469 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 548 (967)
+..+++|++|++++|.+++..|..
T Consensus 297 l~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------------------- 320 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANKFENLCQIS-------------------------------------------------------- 320 (606)
T ss_dssp CCSCTTCCEEECTTCCCSBGGGGC--------------------------------------------------------
T ss_pred hcccccCCEEECccCCcCcCchhh--------------------------------------------------------
Confidence 334444444444444443222222
Q ss_pred ccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcc-cccCCCCCccEEECCC
Q 046844 549 YSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPAC-LITKSSSTLEVLNLGR 627 (967)
Q Consensus 549 ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~L~~L~Ls~ 627 (967)
+..+++|++|++++|.+.+.+|.. +..+. +|++|++++
T Consensus 321 ---------------------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~--~L~~L~l~~ 359 (606)
T 3t6q_A 321 ---------------------------------------ASNFPSLTHLSIKGNTKRLELGTGCLENLE--NLRELDLSH 359 (606)
T ss_dssp ---------------------------------------GGGCTTCSEEECCSCSSCCBCCSSTTTTCT--TCCEEECCS
T ss_pred ---------------------------------------hhccCcCCEEECCCCCcccccchhhhhccC--cCCEEECCC
Confidence 223344444444444444333332 22222 455555555
Q ss_pred CcCcccC--CCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccch-hhhcCCCCCEEEccCCccc
Q 046844 628 NNLNGTL--SDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPC-WLRNASSLQVLVLRSNNFS 704 (967)
Q Consensus 628 N~l~~~i--p~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~ 704 (967)
|.+++.. +.. |..+++|++|++++|++++..|..|..+++|+.|++++|++++..|. ++.++++|++|++++|+++
T Consensus 360 n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 360 DDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SCCCEEEESTTT-TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CccccccCcchh-cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 5444322 333 55555555555555555555555555556666666666665554432 3555666666666666665
Q ss_pred eecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccC
Q 046844 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP 784 (967)
Q Consensus 705 ~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (967)
+.. |..+..+++|+.|++++|++++..... ......+
T Consensus 439 ~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------------------------------~~~~~~l 475 (606)
T 3t6q_A 439 ISS--EQLFDGLPALQHLNLQGNHFPKGNIQK-----------------------------------------TNSLQTL 475 (606)
T ss_dssp TTC--TTTTTTCTTCCEEECTTCBCGGGEECS-----------------------------------------SCGGGGC
T ss_pred CcC--HHHHhCCCCCCEEECCCCCCCcccccc-----------------------------------------chhhccC
Confidence 544 555556666666666666655421100 0001245
Q ss_pred CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEc
Q 046844 785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL 864 (967)
Q Consensus 785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 864 (967)
+.|+.|++++|++++.+|..|+.+++|+.|+|++|++++.+|..+++++.| .|||++|++++.+|..+..++.|+.+++
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 678888888888888889999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cCCccccCCCC
Q 046844 865 SYNNLVGKIPT 875 (967)
Q Consensus 865 s~N~l~g~ip~ 875 (967)
++|++++..+.
T Consensus 555 ~~N~~~c~c~~ 565 (606)
T 3t6q_A 555 RQNPLDCTCSN 565 (606)
T ss_dssp TTCCEECSGGG
T ss_pred CCCCccccCCc
Confidence 99999987763
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-50 Score=483.74 Aligned_cols=458 Identities=20% Similarity=0.220 Sum_probs=292.2
Q ss_pred chhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCC
Q 046844 215 GTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNL 294 (967)
Q Consensus 215 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 294 (967)
.|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.....+.+..+++|++|++++|.+.+..+..++.+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 34445555666666666666665555566666777777777776666566666667788888888888887777788888
Q ss_pred CCCC--EEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCC--CCCCChhhhhccc--C
Q 046844 295 ENLT--RVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNL--SGGISSTFWEQLL--N 368 (967)
Q Consensus 295 ~~L~--~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~~l~--~ 368 (967)
++|+ +|++++|.+++..|..+. ..+|++|++++|..............++.+.+....- ...++...+..+. +
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred cccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 8888 888888888876665554 4678888888876221111111112344444432211 0123333344444 7
Q ss_pred ccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEEC
Q 046844 369 LQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDL 448 (967)
Q Consensus 369 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L 448 (967)
|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+ ..+++|++|++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------------~lp~~l-~~l~~L~~L~l 308 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--------------------------ELPSGL-VGLSTLKKLVL 308 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--------------------------CCCSSC-CSCTTCCEEEC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC--------------------------CCChhh-cccccCCEEEC
Confidence 888899988888777777888888888888888776 233333 56677777777
Q ss_pred CCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcc-hhccCCCCcceeecccccccCcCCCCCCCCccEEe
Q 046844 449 SSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNW-IWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLD 527 (967)
Q Consensus 449 s~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~ 527 (967)
++|+++.+... .+..+++|++|++++|.+.+.+|.. +.. +++|++|+
T Consensus 309 ~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------------------------l~~L~~L~ 356 (606)
T 3t6q_A 309 SANKFENLCQI--------SASNFPSLTHLSIKGNTKRLELGTGCLEN------------------------LENLRELD 356 (606)
T ss_dssp TTCCCSBGGGG--------CGGGCTTCSEEECCSCSSCCBCCSSTTTT------------------------CTTCCEEE
T ss_pred ccCCcCcCchh--------hhhccCcCCEEECCCCCcccccchhhhhc------------------------cCcCCEEE
Confidence 77776633211 1566677777777777766555432 111 22344444
Q ss_pred CCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCC
Q 046844 528 LHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT 607 (967)
Q Consensus 528 Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~ 607 (967)
+++|++++.. ..+..+..+++|++|++++|++.+.
T Consensus 357 l~~n~l~~~~---------------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 357 LSHDDIETSD---------------------------------------------CCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CCSSCCCEEE---------------------------------------------ESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CCCCcccccc---------------------------------------------CcchhcccCCCCCEEECCCCcCCcC
Confidence 4444333210 0123345566777777777777665
Q ss_pred CCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccc---cc
Q 046844 608 IPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN---FP 684 (967)
Q Consensus 608 ~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p 684 (967)
.|..+.... +|+.|++++|++.+..|...|..+++|++|++++|.+++..|..|..+++|++|++++|++++. .+
T Consensus 392 ~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 392 KTEAFKECP--QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp CTTTTTTCT--TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred CHHHhcCCc--cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 565555544 6677777777666555554466666666666666666666666666666666666666666652 22
Q ss_pred hhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCce
Q 046844 685 CWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQF 764 (967)
Q Consensus 685 ~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (967)
..+..+++|++|++++|++++.. |..+..++
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~----------------------------------------------- 500 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSID--QHAFTSLK----------------------------------------------- 500 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEEC--TTTTTTCT-----------------------------------------------
T ss_pred hhhccCCCccEEECCCCccCccC--hhhhcccc-----------------------------------------------
Confidence 44555666666666666665554 44444444
Q ss_pred eeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcc
Q 046844 765 YEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNN 844 (967)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~ 844 (967)
.|+.||+++|++++.+|..++.++.| .|||++|++++.+|..++.+++|+.||+++|.
T Consensus 501 ---------------------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 501 ---------------------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ---------------------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ---------------------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 45556666666666777778888888 89999999998888888888999999999999
Q ss_pred ccccCC
Q 046844 845 LSGKIP 850 (967)
Q Consensus 845 l~g~ip 850 (967)
+++..+
T Consensus 559 ~~c~c~ 564 (606)
T 3t6q_A 559 LDCTCS 564 (606)
T ss_dssp EECSGG
T ss_pred ccccCC
Confidence 887665
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.1e-51 Score=488.77 Aligned_cols=539 Identities=21% Similarity=0.174 Sum_probs=361.1
Q ss_pred CEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEec
Q 046844 151 TELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDL 230 (967)
Q Consensus 151 ~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 230 (967)
++++.++.+++..+..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 14 ~~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TEEECTTSCCSSCCTTS------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CceEccCCCcccCCCCC------CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 45566666665544321 267888888888888777777888888888888888888777778888888888888
Q ss_pred cCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCC
Q 046844 231 SECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTG 309 (967)
Q Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~ 309 (967)
++|.+++..|..|+++++|++|++++|.+.......+..+++|++|++++|.+.+ .+|..++++++|++|++++|++++
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 8888887778888888888888888888766665667778888888888888775 457778888888888888888877
Q ss_pred CCCccccCCCCCc----EEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcCh
Q 046844 310 PIPPSMANLTQLF----HMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPR 385 (967)
Q Consensus 310 ~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 385 (967)
..+..+..+++|+ +|++++|.+.+..+..+...+|++|++++|.+.+......+.++++|+.+++..+.+.+.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--- 244 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--- 244 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS---
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC---
Confidence 6666666665554 677777777766655555557777777777766444334466667776666654443321
Q ss_pred hccCCCCCCEEeCcCCcCccccccccccCCCcccEEEe-eCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCc
Q 046844 386 SLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDL-SGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPR 464 (967)
Q Consensus 386 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l-~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~ 464 (967)
..+..+. ... + .......++.+++ ..+.+.+.+|. |..+++|+.|++++|.+..+
T Consensus 245 -----~~l~~~~--~~~----~---~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-------- 300 (606)
T 3vq2_A 245 -----RNLEIFE--PSI----M---EGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-------- 300 (606)
T ss_dssp -----CCCSCCC--GGG----G---TTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC--------
T ss_pred -----CcccccC--hHH----h---hhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh--------
Confidence 0111000 000 0 0001123555565 44555555554 46666666666666665432
Q ss_pred cCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCC
Q 046844 465 AIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNT 544 (967)
Q Consensus 465 ~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 544 (967)
|.+..+++|++|++++|.+ +.+|.. .+++|+.|++++|+..+.+
T Consensus 301 --~~l~~~~~L~~L~l~~n~l-~~lp~~--------------------------~l~~L~~L~l~~n~~~~~~------- 344 (606)
T 3vq2_A 301 --EDVPKHFKWQSLSIIRCQL-KQFPTL--------------------------DLPFLKSLTLTMNKGSISF------- 344 (606)
T ss_dssp --CCCCTTCCCSEEEEESCCC-SSCCCC--------------------------CCSSCCEEEEESCSSCEEC-------
T ss_pred --hhccccccCCEEEcccccC-cccccC--------------------------CCCccceeeccCCcCccch-------
Confidence 2244555566666666655 344422 2334444444444222110
Q ss_pred ceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCC--CCcccccCCCCCccE
Q 046844 545 SYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGT--IPACLITKSSSTLEV 622 (967)
Q Consensus 545 ~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~~~~~~L~~ 622 (967)
.+..+++|++|++++|++++. +|..+.... +|++
T Consensus 345 ------------------------------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~ 380 (606)
T 3vq2_A 345 ------------------------------------------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRH 380 (606)
T ss_dssp ------------------------------------------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS--CCCE
T ss_pred ------------------------------------------hhccCCCCCEEECcCCccCCCcchhhhhccCC--cccE
Confidence 123456677777777776643 355555544 6777
Q ss_pred EECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCC
Q 046844 623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701 (967)
Q Consensus 623 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 701 (967)
|++++|.++ .+|.. |..+++|++|++++|++++..| ..|..+++|++|++++|++++..|..+.++++|++|++++|
T Consensus 381 L~L~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 381 LDLSFNGAI-IMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EECCSCSEE-EECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred eECCCCccc-cchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 777777766 45544 6677777777777777776666 56777777777777777777777777777777777777777
Q ss_pred ccce-ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeee
Q 046844 702 NFSG-HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKL 780 (967)
Q Consensus 702 ~l~~-~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (967)
++++ .+ |..+..+++
T Consensus 459 ~l~~~~~--~~~~~~l~~-------------------------------------------------------------- 474 (606)
T 3vq2_A 459 SFKDNTL--SNVFANTTN-------------------------------------------------------------- 474 (606)
T ss_dssp EEGGGEE--CSCCTTCTT--------------------------------------------------------------
T ss_pred cCCCcch--HHhhccCCC--------------------------------------------------------------
Confidence 7665 23 444444444
Q ss_pred cccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC-CC
Q 046844 781 LKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN-FL 859 (967)
Q Consensus 781 ~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L 859 (967)
|+.|++++|++++.+|..|+.+++|++|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|
T Consensus 475 ------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L 547 (606)
T 3vq2_A 475 ------LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSL 547 (606)
T ss_dssp ------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred ------CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence 455555555566667777888999999999999999999999999999999999999998 6777788887 59
Q ss_pred CeEEccCCccccCCCC
Q 046844 860 SVLNLSYNNLVGKIPT 875 (967)
Q Consensus 860 ~~l~ls~N~l~g~ip~ 875 (967)
+++++++|++.+..|.
T Consensus 548 ~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 548 AFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEECCSCCCCCSSTT
T ss_pred cEEEccCCCcccCCcc
Confidence 9999999999887774
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-50 Score=499.61 Aligned_cols=570 Identities=20% Similarity=0.213 Sum_probs=349.9
Q ss_pred EEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcc-hhhhcCCCCCCEEec
Q 046844 152 ELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSG-TEFLAHLTNLKALDL 230 (967)
Q Consensus 152 ~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L 230 (967)
..+.++++++.++. ..++|++|+|++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|+|
T Consensus 8 ~~dcs~~~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEESCCCSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCCCCCC-------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 45566666655432 2467777777777777766777777777777777777555554 566777777777777
Q ss_pred cCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCcc-ccccCCCCCCEEEccCCCC
Q 046844 231 SECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPN--FPKNSSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSCNF 307 (967)
Q Consensus 231 s~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l 307 (967)
++|.+.+..|..|.++++|++|+|++|.+....... +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 777777666777777777777777777665433222 5566667777776666665443 4566666666666666666
Q ss_pred CCCCCccccCC--CCCcEEEccCccccccCcccccc-CcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcC
Q 046844 308 TGPIPPSMANL--TQLFHMDFSSNHFFGPIPSLHKS-RNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIP 384 (967)
Q Consensus 308 ~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 384 (967)
++..+..+..+ ++|+.|+++.|.+.+..+..... .+ . +.. ..|+.|++++|.+++..+
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~-~~~-~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------P-FRN-MVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------T-TTT-CCBSEEBCSSCCSSTTTT
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCC-----------------c-ccc-CceeEEecCCCcCchhHH
Confidence 66666666555 56666666666655543321110 01 0 000 124444444444443333
Q ss_pred hhccC---CCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccC--CCCCEEECCCCcccccccC
Q 046844 385 RSLFL---LPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL--RNLYTLDLSSNKFSRLKLA 459 (967)
Q Consensus 385 ~~l~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l--~~L~~L~Ls~n~l~~l~~~ 459 (967)
..+.. .+.++.+.+..+.+.... ..+.+. ......|..+ ++|+.|++++|.+..+.
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-- 282 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLN-- 282 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEEC--
T ss_pred HHHHhhcCcccccceecccccccccc----------------cccccC-CCChhhhhccccCCccEEECCCCcccccC--
Confidence 33321 133444444433221100 011111 1111112222 44555555555444221
Q ss_pred CCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCC
Q 046844 460 SSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIP 538 (967)
Q Consensus 460 ~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~ 538 (967)
|. +..+++|+.|++++|++++..|..+.. +++|++|++++|+
T Consensus 283 -------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------------------------l~~L~~L~Ls~N~------ 325 (844)
T 3j0a_A 283 -------SRVFETLKDLKVLNLAYNKINKIADEAFYG------------------------LDNLQVLNLSYNL------ 325 (844)
T ss_dssp -------SCCSSSCCCCCEEEEESCCCCEECTTTTTT------------------------CSSCCEEEEESCC------
T ss_pred -------hhhhhcCCCCCEEECCCCcCCCCChHHhcC------------------------CCCCCEEECCCCC------
Confidence 11 444455555555555554433333221 2233333333333
Q ss_pred CCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCC
Q 046844 539 YMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSS 618 (967)
Q Consensus 539 ~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 618 (967)
+++..|..+..+++|+.|++++|++.+..+..+....
T Consensus 326 -----------------------------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-- 362 (844)
T 3j0a_A 326 -----------------------------------------LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-- 362 (844)
T ss_dssp -----------------------------------------CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC--
T ss_pred -----------------------------------------CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC--
Confidence 3333344555667777777777777655555555544
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccccc-chhhhcCCCCCEEE
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF-PCWLRNASSLQVLV 697 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 697 (967)
+|+.|+|++|.++ .++ .+++|+.|++++|+++. +|.. ..+++.|++++|++++.. +..+.++++|++|+
T Consensus 363 ~L~~L~Ls~N~l~-~i~-----~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 363 KLQTLDLRDNALT-TIH-----FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCCEEEEETCCSC-CCS-----SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred CCCEEECCCCCCC-ccc-----CCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceee
Confidence 7778888877776 232 35677888888888873 3433 457888888888888753 33456788888888
Q ss_pred ccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccce
Q 046844 698 LRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIE 777 (967)
Q Consensus 698 L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (967)
|++|++++... ...+..+++|+.|++++|.+++..+.. ..
T Consensus 433 Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~---------------------------------------~~ 472 (844)
T 3j0a_A 433 LNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWETE---------------------------------------LC 472 (844)
T ss_dssp EESCCCCCCCS-SSSSCSCTTCCBCEEESCCCSSSCCSC---------------------------------------CC
T ss_pred CCCCccccccc-ccccccCCccccccCCCCccccccccc---------------------------------------cc
Confidence 88888886531 223556788999999999887433210 00
Q ss_pred eeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC
Q 046844 778 IKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN 857 (967)
Q Consensus 778 ~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 857 (967)
......++.|+.|||++|++++.+|..|+.+++|+.|||++|++++..|..+. ++|+.|||++|+|+|.+|..+.
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~--- 547 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV--- 547 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---
Confidence 01123567899999999999999999999999999999999999998887776 8999999999999999998764
Q ss_pred CCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCCCCCCCCCCCC
Q 046844 858 FLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNESQAR 905 (967)
Q Consensus 858 ~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~ 905 (967)
.|+.+++++|.+.+..+.. .|......++..+||.|....|..+
T Consensus 548 ~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 548 SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCc
Confidence 6899999999999877632 2221122456667777666677644
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-49 Score=473.37 Aligned_cols=515 Identities=20% Similarity=0.152 Sum_probs=330.1
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcc
Q 046844 248 TLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFS 327 (967)
Q Consensus 248 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 327 (967)
++++|++++|.+.......|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 34444444444333333334444444444444444444444444445555555555555544444445555555555555
Q ss_pred CccccccCcc-ccccCcccEEECCCCCCCC-CCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCC----EEeCcCC
Q 046844 328 SNHFFGPIPS-LHKSRNLNNLDLSFNNLSG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLE----MLQLSNN 401 (967)
Q Consensus 328 ~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n 401 (967)
+|.+.+..+. +..+.+|++|++++|.+.+ .+|.. ++++++|++|++++|.+++..+..+..+++|+ +|++++|
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 5544433322 2222355555555555543 34444 56666666666666666655555555444433 6777777
Q ss_pred cCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECc
Q 046844 402 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS 481 (967)
Q Consensus 402 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls 481 (967)
.+.+..+... ...+|+.|++++|.+.+......+..++.++.+++..+.+..... +
T Consensus 192 ~l~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~----------------l------ 247 (606)
T 3vq2_A 192 PIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN----------------L------ 247 (606)
T ss_dssp CCCEECTTTT--TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC----------------C------
T ss_pred CcceeCcccc--cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc----------------c------
Confidence 7664443322 122677777777766644444444777777777665443331100 0
Q ss_pred CCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeC-CCCCCCCCCCCC--CCCCceeeccCCcCCCCC
Q 046844 482 DNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDL-HSNQLRGNIPYM--SPNTSYVDYSNNNFTSIP 558 (967)
Q Consensus 482 ~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~L-s~n~l~~~~~~~--~~~l~~L~ls~n~l~~i~ 558 (967)
....+..+.... .+ .++.+++ ..+.+.+.+|.. .++++.+++++|.++.+
T Consensus 248 ----~~~~~~~~~~l~-----~l-----------------~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l- 300 (606)
T 3vq2_A 248 ----EIFEPSIMEGLC-----DV-----------------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL- 300 (606)
T ss_dssp ----SCCCGGGGTTGG-----GS-----------------EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-
T ss_pred ----cccChHHhhhhh-----hc-----------------cHhheeccccccccccccccccCCCCCEEEecCccchhh-
Confidence 000000110000 00 1233333 333333333221 12333333333333222
Q ss_pred cchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCC
Q 046844 559 ADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTI 638 (967)
Q Consensus 559 ~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~ 638 (967)
| .+..+++|+.|++++|.+ +.+|. + ... +|++|++++|...+.++
T Consensus 301 --------------------------~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~--~L~~L~l~~n~~~~~~~--- 345 (606)
T 3vq2_A 301 --------------------------E-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLP--FLKSLTLTMNKGSISFK--- 345 (606)
T ss_dssp --------------------------C-CCCTTCCCSEEEEESCCC-SSCCC-C-CCS--SCCEEEEESCSSCEECC---
T ss_pred --------------------------h-hccccccCCEEEcccccC-ccccc-C-CCC--ccceeeccCCcCccchh---
Confidence 2 345567888899999988 57884 3 444 89999999986665553
Q ss_pred CCCCCcccEEeCCCCccCCC--CcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC-CCCCC
Q 046844 639 FPGDCGLQILDLSGNQLQGV--VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP-RNKVS 715 (967)
Q Consensus 639 ~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p-~~~~~ 715 (967)
+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+.. | ..+..
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~ 422 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT--EFSAFLS 422 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT--TTTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc--Chhhhhc
Confidence 67888999999999999876 47888999999999999999887 5578889999999999999998875 5 57888
Q ss_pred CCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCC
Q 046844 716 WPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSN 795 (967)
Q Consensus 716 l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N 795 (967)
+++|+.|++++|++++..|..+ ..++.|+.|++++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~--------------------------------------------~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIF--------------------------------------------LGLTSLNTLKMAGN 458 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTT--------------------------------------------TTCTTCCEEECTTC
T ss_pred cccCCEEECcCCCCCccchhhh--------------------------------------------cCCCCCCEEECCCC
Confidence 9999999999999987766322 24677999999999
Q ss_pred cccC-CCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCC
Q 046844 796 NFEG-PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 796 ~l~g-~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 874 (967)
++++ .+|..++.+++|+.|+|++|++++.+|..|+++++|+.|||++|++++.+|..+.+++.|++|++++|+++ .+|
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p 537 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSK 537 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEE
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccC
Confidence 9998 47889999999999999999999999999999999999999999999999999999999999999999998 577
Q ss_pred CCC-cCC-ccCCCccCCCCCCCCCC
Q 046844 875 TST-QLQ-SFSPTSYEGNKGLYGPP 897 (967)
Q Consensus 875 ~~~-~~~-~~~~~~~~gn~~lcg~~ 897 (967)
... .+. .+....+.|||..|..+
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HhHhhhcccCcEEEccCCCcccCCc
Confidence 651 221 23445678898777644
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.8e-48 Score=477.46 Aligned_cols=482 Identities=22% Similarity=0.230 Sum_probs=279.7
Q ss_pred cCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhh--hcCCCCCCEEeccCCCCCCccc-hhccCCCC
Q 046844 172 SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEF--LAHLTNLKALDLSECGLQGKFP-EKILHVPT 248 (967)
Q Consensus 172 ~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~ 248 (967)
.++++|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..+.. |+++++|++|++++|.+++..+ ..|.++++
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 34444444555555555555666667777777777777666654443 6666666666666666665433 35566666
Q ss_pred CCEEeccCCCCCCCCCCCCCCC--CCCCEEEccCCCCCCCccccccCCCC------CCEEEccCCCCCCCCCccccCC--
Q 046844 249 LETLDLSINQLLQGSLPNFPKN--SSLRDLILSHTGLSGTLPDSIGNLEN------LTRVEVSSCNFTGPIPPSMANL-- 318 (967)
Q Consensus 249 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l-- 318 (967)
|++|++++|.+.......+..+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+++..+..+...
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 229 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSC
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcC
Confidence 6666666665543333333333 44555555555555444444433333 4445554444444333333211
Q ss_pred -CCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhc--ccCccEEEcCCCcCCCCcChhccCCCCCCE
Q 046844 319 -TQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQ--LLNLQIVVLGHNSLSGSIPRSLFLLPNLEM 395 (967)
Q Consensus 319 -~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 395 (967)
.+++.+.++.+..... +..+.+.+..... +.. .++|+.|++++|.+.+..+..+..+++|+.
T Consensus 230 ~~~l~~L~l~~~~~~~~--------------~~~~~l~~~~~~~-f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 230 KSQAFSLILAHHIMGAG--------------FGFHNIKDPDQNT-FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294 (844)
T ss_dssp SCCBSEEECCSSCCBCS--------------SSCSSSTTGGGTT-TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred cccccceeccccccccc--------------ccccccCCCChhh-hhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence 2333333332211100 0112222111111 222 256667777777666666666666666666
Q ss_pred EeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCc
Q 046844 396 LQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQL 475 (967)
Q Consensus 396 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L 475 (967)
|++++|++.+..+. .+..+++|+.|++++|.+.+..|. .|..+++|+.|++++|
T Consensus 295 L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N------------------------ 348 (844)
T 3j0a_A 295 LNLAYNKINKIADE-AFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKN------------------------ 348 (844)
T ss_dssp EEEESCCCCEECTT-TTTTCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSC------------------------
T ss_pred EECCCCcCCCCChH-HhcCCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCC------------------------
Confidence 66666666543332 122344444455554444422222 2244444444444444
Q ss_pred cEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCC
Q 046844 476 SVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFT 555 (967)
Q Consensus 476 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~ 555 (967)
++++..+..+.. .++|+.|++++|.++.++. +++|+.+++++|+++ .+|.....++.+++++|+++
T Consensus 349 --------~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 349 --------HIAIIQDQTFKF--LEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp --------CCCCCCSSCSCS--CCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCC
T ss_pred --------CCCccChhhhcC--CCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc-cccccccccceeecccCccc
Confidence 444333333321 1234444444444443322 344555555555554 22333344555555555554
Q ss_pred CCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcc---
Q 046844 556 SIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG--- 632 (967)
Q Consensus 556 ~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~--- 632 (967)
.++. +..+..+++|+.|++++|++++..+..... ..++|+.|+|++|.+++
T Consensus 415 ~l~~-------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 415 NLDI-------------------------LYFLLRVPHLQILILNQNRFSSCSGDQTPS-ENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp SSTT-------------------------HHHHTTCTTCCEEEEESCCCCCCCSSSSSC-SCTTCCBCEEESCCCSSSCC
T ss_pred cCch-------------------------hhhhhcCCccceeeCCCCcccccccccccc-cCCccccccCCCCccccccc
Confidence 4332 123456788999999999988543332221 12389999999999873
Q ss_pred --cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC
Q 046844 633 --TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP 710 (967)
Q Consensus 633 --~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p 710 (967)
..+.. |.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|++|+|++|++++.+ |
T Consensus 469 ~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~--~ 543 (844)
T 3j0a_A 469 TELCWDV-FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN--P 543 (844)
T ss_dssp SCCCSSC-SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC--S
T ss_pred cccchhh-hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC--h
Confidence 22333 88899999999999999999999999999999999999999998887776 89999999999999987 6
Q ss_pred CCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844 711 RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742 (967)
Q Consensus 711 ~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~ 742 (967)
..+ .+|+.+++++|++.|.++..++..+.
T Consensus 544 ~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 544 DVF---VSLSVLDITHNKFICECELSTFINWL 572 (844)
T ss_dssp CCC---SSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred hHh---CCcCEEEecCCCcccccccHHHHHHH
Confidence 554 58999999999999999876665444
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-46 Score=441.68 Aligned_cols=501 Identities=20% Similarity=0.167 Sum_probs=310.8
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEec
Q 046844 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDL 254 (967)
Q Consensus 175 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (967)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45777777777777666666777777777777777776666666777777777777777777666667777777777777
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC----cEEEccCc
Q 046844 255 SINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL----FHMDFSSN 329 (967)
Q Consensus 255 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n 329 (967)
++|.+.......+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++| +++++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7776655544456666677777777776665 356666667777777777776665555556555555 56666666
Q ss_pred cccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcccccc
Q 046844 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPE 409 (967)
Q Consensus 330 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 409 (967)
.+.+..+..+...+|++|++++|..... ..+..+..++.++.+.+....+...
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~------------------------~~~~~~~~l~~l~~~~l~~~~~~~~--- 240 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLN------------------------VMKTCIQGLAGLEVHRLVLGEFRNE--- 240 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTT------------------------HHHHHHHTTTTCEEEEEEEEECCCC---
T ss_pred CceecCHHHhccCcceeEeccccccccc------------------------chhhhhcCccccceeeeccccccCc---
Confidence 6555544444444555555555433221 1223334444444433322111100
Q ss_pred ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCC-ccCCC
Q 046844 410 ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN-QISGE 488 (967)
Q Consensus 410 ~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n-~i~~~ 488 (967)
..++ .++...|..++++ .++.++++++ .+.+.
T Consensus 241 ------~~l~-----------~~~~~~~~~l~~l------------------------------~l~~l~l~~~~~~~~~ 273 (570)
T 2z63_A 241 ------GNLE-----------KFDKSALEGLCNL------------------------------TIEEFRLAYLDYYLDD 273 (570)
T ss_dssp ------SSCE-----------ECCTTTTGGGGGS------------------------------EEEEEEEEETTEEESC
T ss_pred ------hhhh-----------hcchhhhcccccc------------------------------chhhhhhhcchhhhhh
Confidence 0000 1111111111111 1344445444 44444
Q ss_pred CCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhcccccc
Q 046844 489 VPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSET 568 (967)
Q Consensus 489 ~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l 568 (967)
.|..+... ++|+.|++++|.++.+
T Consensus 274 ~~~~~~~l--~~L~~L~l~~~~l~~l------------------------------------------------------ 297 (570)
T 2z63_A 274 IIDLFNCL--TNVSSFSLVSVTIERV------------------------------------------------------ 297 (570)
T ss_dssp STTTTGGG--TTCSEEEEESCEECSC------------------------------------------------------
T ss_pred chhhhcCc--CcccEEEecCccchhh------------------------------------------------------
Confidence 44443322 1233333322222221
Q ss_pred ceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEE
Q 046844 569 EYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQIL 648 (967)
Q Consensus 569 ~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 648 (967)
|..+..+ +|+.|++++|.+. .+|.. ... +|+.|++++|.+.+.++. ..+++|++|
T Consensus 298 ----------------~~~~~~~-~L~~L~l~~n~~~-~l~~~--~l~--~L~~L~l~~n~~~~~~~~---~~~~~L~~L 352 (570)
T 2z63_A 298 ----------------KDFSYNF-GWQHLELVNCKFG-QFPTL--KLK--SLKRLTFTSNKGGNAFSE---VDLPSLEFL 352 (570)
T ss_dssp ----------------CBCCSCC-CCSEEEEESCBCS-SCCBC--BCS--SCCEEEEESCBSCCBCCC---CBCTTCCEE
T ss_pred ----------------hhhhccC-CccEEeeccCccc-ccCcc--ccc--ccCEEeCcCCcccccccc---ccCCCCCEE
Confidence 1122223 4555555555554 44432 122 555555555555544432 345566666
Q ss_pred eCCCCccCCCC--cccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCC-CCCCCCCCCcEEecC
Q 046844 649 DLSGNQLQGVV--PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCP-RNKVSWPLLQIVDLA 725 (967)
Q Consensus 649 ~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p-~~~~~l~~L~~Ldls 725 (967)
++++|++++.. |..+..+++|++|++++|++++..+. +..+++|+.|++++|++.+.. | ..+..+++|+.|+++
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT--TSCTTTTCTTCCEEECT
T ss_pred eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc--chhhhhcCCCCCEEeCc
Confidence 66666666443 55666777777777777777665444 667777777777777776654 3 356677777777777
Q ss_pred CccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCccc-CCCccc
Q 046844 726 CNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFE-GPIPVE 804 (967)
Q Consensus 726 ~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~-g~ip~~ 804 (967)
+|++.+..|..+ ..++.|+.|++++|+++ +.+|..
T Consensus 430 ~n~l~~~~~~~~--------------------------------------------~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 430 HTHTRVAFNGIF--------------------------------------------NGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp TSCCEECCTTTT--------------------------------------------TTCTTCCEEECTTCEEGGGEECSC
T ss_pred CCcccccchhhh--------------------------------------------hcCCcCcEEECcCCcCccccchhh
Confidence 777765554221 13566788888888887 678889
Q ss_pred ccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCC
Q 046844 805 MGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTST 877 (967)
Q Consensus 805 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~ 877 (967)
++.+++|++|+|++|++++.+|..|+++++|+.||+++|++++.+|..+.+++.|+.+++++|+++|.+|...
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998653
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.4e-47 Score=452.40 Aligned_cols=472 Identities=20% Similarity=0.277 Sum_probs=268.4
Q ss_pred CcCCCCCCCCCCCccc---ceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCC------CC-----C
Q 046844 17 KLSQWSSHQSSDCCDW---SGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLF------KG-----F 82 (967)
Q Consensus 17 ~l~~w~~~~~~~~c~w---~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~------~~-----~ 82 (967)
..++| ..++|||.| .||+|+..|||++|+|+++.+.|.+ ++++++|++|++|+|++|.+ .+ .
T Consensus 56 ~~~~W--~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l--p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~ 131 (636)
T 4eco_A 56 PGANW--NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131 (636)
T ss_dssp --CCC--CCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE--CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCT
T ss_pred cCCCC--CCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC--ChHHhcCccceEEECcCCccccCCcccccccccc
Confidence 45689 667899999 9999987799999999999999999 78999999999999999975 11 0
Q ss_pred CCCccccCCCCCCEEeCCCCCCCccCChhccC-CCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcC--Ccc
Q 046844 83 QIPSRLGNLTNLTYLNLSQGGFAGEIPTEISS-LTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLD--RVD 159 (967)
Q Consensus 83 ~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~-l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~--~~~ 159 (967)
.+|... +.+|+ ++++++.+.+.+|..++. +..+..+++... .+. ......++.+.+. .+.
T Consensus 132 ~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~-~~~-------------~~~~~~l~~l~l~~~~n~ 194 (636)
T 4eco_A 132 NMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK-SIK-------------KSSRITLKDTQIGQLSNN 194 (636)
T ss_dssp TCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC-CCC-------------CCCCCCCCTTTTTCCSCE
T ss_pred CchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc-ccc-------------cccccchhhhhhccccCC
Confidence 245443 56677 788888777777766552 112222222210 000 0000111111111 111
Q ss_pred CCCcchhHHHHhcCCCCccEEEccCCCCCCC-----------------Cccccc--CCCCCCEEEccCCCCCCcchhhhc
Q 046844 160 LSASGTEWCKALSFLPNLQVLSLSGCDLSGP-----------------INHYLA--KSRSLSVIRLHYNYGLSSGTEFLA 220 (967)
Q Consensus 160 l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~ 220 (967)
++. .+..+.++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..++
T Consensus 195 l~~----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 195 ITF----VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp EEE----ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred Ccc----CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 211 123344455555555555555553 455555 555555555555555555555555
Q ss_pred CCCCCCEEeccCCC-CCC-ccchhccCC------CCCCEEeccCCCCCCCCCC---CCCCCCCCCEEEccCCCCCCCccc
Q 046844 221 HLTNLKALDLSECG-LQG-KFPEKILHV------PTLETLDLSINQLLQGSLP---NFPKNSSLRDLILSHTGLSGTLPD 289 (967)
Q Consensus 221 ~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~ 289 (967)
++++|++|++++|. +++ .+|..++.+ ++|++|++++|.+. .++ .+..+++|++|++++|.+.|.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 55555555555555 554 455555444 55555555555544 222 24455555555555555555555
Q ss_pred cccCCCCCCEEEccCCCCCCCCCccccCCCC-CcEEEccCccccccCccccccC---cccEEECCCCCCCCCCChhhhh-
Q 046844 290 SIGNLENLTRVEVSSCNFTGPIPPSMANLTQ-LFHMDFSSNHFFGPIPSLHKSR---NLNNLDLSFNNLSGGISSTFWE- 364 (967)
Q Consensus 290 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~- 364 (967)
.++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+... +|++|++++|.+.+.+|.. +.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~ 424 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDP 424 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh-hcc
Confidence 5555556666666666555 45555555555 666666666655 333332221 4566666666665555544 33
Q ss_pred ------cccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCC-------CcccEEEeeCCcCCCC
Q 046844 365 ------QLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSS-------SVLFDLDLSGNRLEGP 431 (967)
Q Consensus 365 ------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------~~L~~L~l~~n~l~~~ 431 (967)
.+++|++|++++|.++...+..+..+++|++|++++|++. .+|....... ++|+.|++++|.++ .
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 4556666666666666322223344666666666666666 3332222111 26666666666666 5
Q ss_pred CChhhh-ccCCCCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEEC------cCCccCCCCCcchhccCCCCcce
Q 046844 432 VPISIF-FELRNLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDI------SDNQISGEVPNWIWEVGSGNLKF 503 (967)
Q Consensus 432 i~~~~~-~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~L------s~n~i~~~~~~~~~~~~~~~L~~ 503 (967)
+|..++ ..+++|+.|++++|+++. +|. +..+++|++|++ ++|++.+.+|..+..+ ++|++
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N~l~~----------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l--~~L~~ 570 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYNSFSK----------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC--PSLTQ 570 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS----------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC--SSCCE
T ss_pred cChhhhhccCCCcCEEECCCCCCCC----------cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC--CCCCE
Confidence 665553 366777777777776652 333 556677777777 4566667777666543 34666
Q ss_pred eecccccccCcCCCCCCCCccEEeCCCCCCC
Q 046844 504 LNLSHNLVVSLQEPYSISGIRFLDLHSNQLR 534 (967)
Q Consensus 504 L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~ 534 (967)
|++++|.++.+|.... ++|+.|++++|++.
T Consensus 571 L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 571 LQIGSNDIRKVNEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp EECCSSCCCBCCSCCC-TTCCEEECCSCTTC
T ss_pred EECCCCcCCccCHhHh-CcCCEEECcCCCCc
Confidence 6666666655544322 45555555555444
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-45 Score=446.62 Aligned_cols=325 Identities=20% Similarity=0.189 Sum_probs=221.5
Q ss_pred ceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeC-CCCCCCCCCCCcc------------------------
Q 046844 33 SGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNL-GFTLFKGFQIPSR------------------------ 87 (967)
Q Consensus 33 ~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~lp~~------------------------ 87 (967)
.||+|+..+||+.|+|+++.+.|.+ ++++++|++|++|+| ++|.+.|. .|-.
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~i--p~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~ 391 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMF 391 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEE--CGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred CceEecCCCCEEEEECccCCCCCcC--chHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhh
Confidence 9999987799999999999999999 889999999999999 77765443 1110
Q ss_pred ---------------------------ccCCCCCCEEeCCC--CCCCccCChhccCCCCCCEEeCCCCCCCccccccccc
Q 046844 88 ---------------------------LGNLTNLTYLNLSQ--GGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIA 138 (967)
Q Consensus 88 ---------------------------l~~l~~L~~L~Ls~--~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~ 138 (967)
......++.+.+.. |.+++ +|..+++|++|++|++++|. ++.. .+.
T Consensus 392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~-Lsg~---~i~ 466 (876)
T 4ecn_A 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSP-FTYD---NIA 466 (876)
T ss_dssp TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGG---GBS
T ss_pred hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCc-CCCC---ccc
Confidence 01222334444443 67776 99999999999999999964 3310 000
Q ss_pred cHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhc--CCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCC-CCC-c
Q 046844 139 NLSLFLQNLTELTELHLDRVDLSASGTEWCKALS--FLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY-GLS-S 214 (967)
Q Consensus 139 ~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~--~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~-~~~-~ 214 (967)
. .. +..+.+.. ....+..+. .+++|++|+|++|.+.+.+|..+.++++|++|++++|. +.+ .
T Consensus 467 ~---~~--------~~~s~n~~---~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~ 532 (876)
T 4ecn_A 467 V---DW--------EDANSDYA---KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532 (876)
T ss_dssp S---SC--------SCTTSHHH---HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH
T ss_pred c---cc--------cccccccc---cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc
Confidence 0 00 00000000 011233444 78888888888888888888888899999999999987 777 7
Q ss_pred chhhhcCCC-------CCCEEeccCCCCCCccch--hccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCC
Q 046844 215 GTEFLAHLT-------NLKALDLSECGLQGKFPE--KILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSG 285 (967)
Q Consensus 215 ~~~~l~~l~-------~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 285 (967)
+|..++.++ +|++|++++|.++ .+|. .+.++++|++|++++|.+. .++.+..+++|+.|++++|.+.
T Consensus 533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~- 608 (876)
T 4ecn_A 533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE- 608 (876)
T ss_dssp HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCS-
T ss_pred chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccc-
Confidence 777666554 8888999888888 7777 8888888888888888876 4446777778888888888777
Q ss_pred CccccccCCCC-CCEEEccCCCCCCCCCccccCCCC--CcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhh
Q 046844 286 TLPDSIGNLEN-LTRVEVSSCNFTGPIPPSMANLTQ--LFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTF 362 (967)
Q Consensus 286 ~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 362 (967)
.+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+.+|.+.... .
T Consensus 609 ~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l------------------~- 668 (876)
T 4ecn_A 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM------------------D- 668 (876)
T ss_dssp CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT------------------T-
T ss_pred cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh------------------c-
Confidence 67777777777 888888877777 56666655543 7777777777666544322000 0
Q ss_pred hhcccCccEEEcCCCcCCCCcChhc-cCCCCCCEEeCcCCcCc
Q 046844 363 WEQLLNLQIVVLGHNSLSGSIPRSL-FLLPNLEMLQLSNNQFE 404 (967)
Q Consensus 363 ~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~ 404 (967)
...+++|+.|++++|.++ .+|..+ ..+++|+.|++++|++.
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 012335555666666555 334433 35666666666666665
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-46 Score=440.80 Aligned_cols=482 Identities=18% Similarity=0.146 Sum_probs=259.5
Q ss_pred CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302 (967)
Q Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 302 (967)
++|++|++++|.+++..|..|.++++|++|++++|++.......|..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 45555555555555444445555555555555555444333333444444444444444444443334444444444444
Q ss_pred cCCCCCC-CCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCC
Q 046844 303 SSCNFTG-PIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG 381 (967)
Q Consensus 303 s~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 381 (967)
++|.+++ ..|..+.+++ +|++|++++|.+.+.++...+..+++|++|++++|.+++
T Consensus 106 s~n~l~~~~~~~~~~~l~-----------------------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLT-----------------------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCCCSSSCSSCSCTTCT-----------------------TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCcccccchhhhhhccC-----------------------CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 4444442 1233333444 445555555543334443336667777777777777776
Q ss_pred CcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCC
Q 046844 382 SIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASS 461 (967)
Q Consensus 382 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 461 (967)
..|..+..+++|++|+++.|.+. .+|..++..+++|++|++++|+++.+...
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~--------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 214 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESA--------------------------FLLEIFADILSSVRYLELRDTNLARFQFS-- 214 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBST--------------------------THHHHHHHSTTTBSEEEEESCBCTTCCCC--
T ss_pred cChhhhhccccCceEecccCccc--------------------------ccchhhHhhcccccEEEccCCcccccccc--
Confidence 66666666666666666666554 22223333445555555555544432111
Q ss_pred CCccCCCCCCCCCccEEECcCCccCCCCCcchhcc--CCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCC
Q 046844 462 KPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEV--GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPY 539 (967)
Q Consensus 462 ~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 539 (967)
..+....+++|+.|++++|.+++..+..+... ..++|+.+++++|.+..++..... ......
T Consensus 215 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-------------~~~~~~ 278 (549)
T 2z81_A 215 ---PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS-------------ESDVVS 278 (549)
T ss_dssp ---CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC-------------TTTCCC
T ss_pred ---ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc-------------chhhhh
Confidence 11112344556666666666554333322111 112333444444333322111000 000001
Q ss_pred CCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCC
Q 046844 540 MSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST 619 (967)
Q Consensus 540 ~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 619 (967)
..++++.+++.++.+..... ...++..+....+|+.|++++|++. .+|..+
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~---------------------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~------- 329 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYL---------------------FYDLSTVYSLLEKVKRITVENSKVF-LVPCSF------- 329 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGG---------------------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH-------
T ss_pred hhcccccccccccccchhhh---------------------cccchhhhhhcccceEEEeccCccc-cCCHHH-------
Confidence 12233333333332221100 0011112223345555555555554 444433
Q ss_pred ccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc---ccccCCCCCCEEECCCCccccccc--hhhhcCCCCC
Q 046844 620 LEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP---KSLANCNMLQVLDLRSNYISDNFP--CWLRNASSLQ 694 (967)
Q Consensus 620 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~ 694 (967)
+..+++|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+..+++|+
T Consensus 330 -------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 330 -------------------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp -------------------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred -------------------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 2334455555555555544332 224555666666666666665432 4466666666
Q ss_pred EEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEc
Q 046844 695 VLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVK 774 (967)
Q Consensus 695 ~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (967)
+|++++|++++. |..+..+++|+.|++++|++++ +|.
T Consensus 391 ~L~Ls~N~l~~l---p~~~~~~~~L~~L~Ls~N~l~~-l~~--------------------------------------- 427 (549)
T 2z81_A 391 SLDISRNTFHPM---PDSCQWPEKMRFLNLSSTGIRV-VKT--------------------------------------- 427 (549)
T ss_dssp EEECTTCCCCCC---CSCCCCCTTCCEEECTTSCCSC-CCT---------------------------------------
T ss_pred EEECCCCCCccC---ChhhcccccccEEECCCCCccc-ccc---------------------------------------
Confidence 666666666632 6666666777777777777652 120
Q ss_pred cceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCcccc
Q 046844 775 GIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLA 854 (967)
Q Consensus 775 ~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 854 (967)
..++.|+.||+++|++++.+ +.+++|++|||++|+++ .||. .+.+++|++|||++|++++.+|..+.
T Consensus 428 -------~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 428 -------CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp -------TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred -------hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 02345788888888888754 57889999999999998 6887 57899999999999999999999999
Q ss_pred CCCCCCeEEccCCccccCCCC
Q 046844 855 SLNFLSVLNLSYNNLVGKIPT 875 (967)
Q Consensus 855 ~l~~L~~l~ls~N~l~g~ip~ 875 (967)
.++.|++|++++|+++|.+|.
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHHH
T ss_pred cCcccCEEEecCCCccCCCcc
Confidence 999999999999999998884
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.1e-44 Score=423.89 Aligned_cols=502 Identities=16% Similarity=0.157 Sum_probs=287.2
Q ss_pred CCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCE
Q 046844 148 TELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKA 227 (967)
Q Consensus 148 ~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 227 (967)
+.....+.+++.++..+.. + .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..|+++++|++
T Consensus 5 ~~~~~c~~~~~~l~~ip~~----~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSG----L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp CTTSEEECTTSCCSSCCSC----C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCceEECCCCcccccccc----C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 3334455566666554321 1 257777777777777766677777777777777777777766677777777777
Q ss_pred EeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCC-CCCCCCCCCCEEEccCCCCCCCcc-ccccCCCCCCEEEccCC
Q 046844 228 LDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSL-PNFPKNSSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSC 305 (967)
Q Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n 305 (967)
|++++|.+++..|..++++++|++|++++|.+..... +.+..+++|++|++++|.+.+.+| ..+..+++|++|++++|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 7777777776666667777777777777776654333 345556666666666665333333 35555666666666666
Q ss_pred CCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCc--
Q 046844 306 NFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSI-- 383 (967)
Q Consensus 306 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-- 383 (967)
.+++..|..+..+++|++|+++.|.+ . .++..++..+++|++|++++|.+++..
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~-----------------------~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSES-----------------------A-FLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBS-----------------------T-THHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred cccccChhhhhccccCceEecccCcc-----------------------c-ccchhhHhhcccccEEEccCCcccccccc
Confidence 66555555555555555555555443 2 333433445666666666666665431
Q ss_pred C-hhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCC
Q 046844 384 P-RSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSK 462 (967)
Q Consensus 384 ~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 462 (967)
+ .....+++|+.|++++|.+.+..+. .++.. +..+++|+.+++++|.+..+..-.
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------------~l~~~-~~~~~~L~~l~l~~~~~~~~~~~~-- 270 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSVLTDESFN---------------------ELLKL-LRYILELSEVEFDDCTLNGLGDFN-- 270 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCEEEHHHHH---------------------HHHGG-GGGCTTCCEEEEESCEEECCSCCC--
T ss_pred ccchhhhhhcccceeccccccchhHHH---------------------HHHHH-hhhhcccccccccccccccccccc--
Confidence 1 1122345566666666555432221 01111 134455555555555544321100
Q ss_pred CccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCC
Q 046844 463 PRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSP 542 (967)
Q Consensus 463 ~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 542 (967)
....+.+..+.+|+.|+++++.+.. ......++. .....+
T Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~i~~--------------------------~~~~~~l~~--------------~~~~~~ 310 (549)
T 2z81_A 271 PSESDVVSELGKVETVTIRRLHIPQ--------------------------FYLFYDLST--------------VYSLLE 310 (549)
T ss_dssp CCTTTCCCCCTTCCEEEEESCBCSC--------------------------GGGSCCCCH--------------HHHHST
T ss_pred ccchhhhhhhcccccccccccccch--------------------------hhhcccchh--------------hhhhcc
Confidence 0011113334445555555544321 000000000 000012
Q ss_pred CCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhh-hcCCCCcEEEcccCcCCCCCCcccccCCCCCcc
Q 046844 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESV-CKATNFQVLDLSNNNLSGTIPACLITKSSSTLE 621 (967)
Q Consensus 543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~-~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~ 621 (967)
+++.+++++|+++. +|..+ ..+++|++|++++|++++.+|....
T Consensus 311 ~L~~L~l~~n~l~~---------------------------ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------- 355 (549)
T 2z81_A 311 KVKRITVENSKVFL---------------------------VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA-------- 355 (549)
T ss_dssp TCCEEEEESSCCCC---------------------------CCHHHHHHCTTCCEEECCSSCCCHHHHHHHT--------
T ss_pred cceEEEeccCcccc---------------------------CCHHHHhcCccccEEEccCCccccccccchh--------
Confidence 33333333333333 33344 4688999999999998865542210
Q ss_pred EEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc--ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEcc
Q 046844 622 VLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP--KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR 699 (967)
Q Consensus 622 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 699 (967)
. +..+++|++|++++|++++..+ ..+..+++|++||+++|++++ +|..+..+++|++|+++
T Consensus 356 ---------------~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 356 ---------------C-KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp ---------------C-TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECT
T ss_pred ---------------h-hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECC
Confidence 0 2233444444444444443321 234555555555555555553 44455555566666666
Q ss_pred CCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceee
Q 046844 700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIK 779 (967)
Q Consensus 700 ~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (967)
+|++++. |..+ .++|+.||+++|++++.++
T Consensus 419 ~N~l~~l---~~~~--~~~L~~L~Ls~N~l~~~~~--------------------------------------------- 448 (549)
T 2z81_A 419 STGIRVV---KTCI--PQTLEVLDVSNNNLDSFSL--------------------------------------------- 448 (549)
T ss_dssp TSCCSCC---CTTS--CTTCSEEECCSSCCSCCCC---------------------------------------------
T ss_pred CCCcccc---cchh--cCCceEEECCCCChhhhcc---------------------------------------------
Confidence 6655533 2222 2467777777777654321
Q ss_pred ecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCC
Q 046844 780 LLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIP 850 (967)
Q Consensus 780 ~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip 850 (967)
.++.|+.|||++|+++ .||. .+.++.|++|||++|++++.+|..|+++++|+.||+++|.+++.+|
T Consensus 449 ---~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 ---FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3556788888888887 6776 5778999999999999999999999999999999999999999887
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=422.79 Aligned_cols=268 Identities=19% Similarity=0.133 Sum_probs=230.0
Q ss_pred eeeecCC-cccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeC
Q 046844 572 YFVAANN-SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDL 650 (967)
Q Consensus 572 ~l~l~~n-~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L 650 (967)
.+++.++ .+.+.+|..+..+++|+.|++++|.++ .+|..+... +|+.|++++|.+. .+|.. .+++|++|++
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~---~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l 332 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF---GWQHLELVNCKFG-QFPTL---KLKSLKRLTF 332 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC---CCSEEEEESCBCS-SCCBC---BCSSCCEEEE
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC---CccEEeeccCccc-ccCcc---cccccCEEeC
Confidence 3566666 667778888999999999999999998 688877554 8999999999998 77753 5789999999
Q ss_pred CCCccCCCCcccccCCCCCCEEECCCCcccccc--chhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCcc
Q 046844 651 SGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF--PCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNK 728 (967)
Q Consensus 651 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~ 728 (967)
++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|++++.. ..+..+++|+.|++++|+
T Consensus 333 ~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 333 TSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp ESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSE
T ss_pred cCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc---ccccccCCCCEEEccCCc
Confidence 99999887765 78999999999999999865 788999999999999999999874 348899999999999999
Q ss_pred CcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCC
Q 046844 729 FSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRF 808 (967)
Q Consensus 729 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l 808 (967)
+.+..|... ...++.|+.|++++|++++.+|..++.+
T Consensus 408 l~~~~~~~~-------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 408 LKQMSEFSV-------------------------------------------FLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EESCTTSCT-------------------------------------------TTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccccchhh-------------------------------------------hhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 987655211 1246789999999999999999999999
Q ss_pred CCCcEEECCCCCCc-ccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCc
Q 046844 809 RSLYALNMSHNALT-GSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS 886 (967)
Q Consensus 809 ~~L~~L~Ls~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~ 886 (967)
++|++|+|++|.++ +.+|..++.+++|+.||+++|++++.+|..+.++++|++|++++|++++.+|.. ..+..+....
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 99999999999998 789999999999999999999999999999999999999999999999987753 2334444555
Q ss_pred cCCCCCCCC
Q 046844 887 YEGNKGLYG 895 (967)
Q Consensus 887 ~~gn~~lcg 895 (967)
+.+|+.-|.
T Consensus 525 l~~N~~~~~ 533 (570)
T 2z63_A 525 LHTNPWDCS 533 (570)
T ss_dssp CCSSCBCCC
T ss_pred ecCCcccCC
Confidence 677765554
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.9e-43 Score=422.47 Aligned_cols=525 Identities=20% Similarity=0.165 Sum_probs=387.2
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEec
Q 046844 175 PNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDL 254 (967)
Q Consensus 175 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (967)
+++++|+|++|.+++..+..|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 37888999999988877788899999999999999888887888899999999999999998777778889999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC----cEEEccCc
Q 046844 255 SINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL----FHMDFSSN 329 (967)
Q Consensus 255 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L----~~L~L~~n 329 (967)
++|++.......|..+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9998877766678888999999999998875 457788889999999999999987777777665544 36788888
Q ss_pred cccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCC------CCcChhccCCCCCCEEeCcCCcC
Q 046844 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS------GSIPRSLFLLPNLEMLQLSNNQF 403 (967)
Q Consensus 330 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~l~~l~~L~~L~L~~n~l 403 (967)
.+....+.......++.+++.+|.....+....+..+..++...+..+... ......+..+..+...++..+..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 887766666666677888888887665555555667777776665443322 11222222333333333322221
Q ss_pred ccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCC
Q 046844 404 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDN 483 (967)
Q Consensus 404 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n 483 (967)
..... .++ ..|..+.+++.+++.++.+..+. .+....+++.|++++|
T Consensus 292 ~~~~~----------------------~~~-~~~~~~~~l~~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 292 DYYLD----------------------GII-DLFNCLTNVSSFSLVSVTIERVK----------DFSYNFGWQHLELVNC 338 (635)
T ss_dssp CSCEE----------------------ECT-TTTGGGTTCSEEEEESCEEEECG----------GGGSCCCCSEEEEESC
T ss_pred ccccc----------------------chh-hhhhhhccccccccccccccccc----------ccccchhhhhhhcccc
Confidence 11100 111 12244556666666666554321 1344456677777777
Q ss_pred ccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCC-----CCCCCceeeccCCcCCCCC
Q 046844 484 QISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPY-----MSPNTSYVDYSNNNFTSIP 558 (967)
Q Consensus 484 ~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~ls~n~l~~i~ 558 (967)
.+.+..+.. ...++.++++.|.+........+++|+.+++++|.+....+. ...+++++++..+.+..++
T Consensus 339 ~~~~~~~~~-----l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~ 413 (635)
T 4g8a_A 339 KFGQFPTLK-----LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS 413 (635)
T ss_dssp EESSCCCCB-----CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred cccCcCccc-----chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc
Confidence 665443322 234677777777666665555677777777777776542221 2356777777777766555
Q ss_pred cchhccccccceeeeeecCCcccccCC-hhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCC
Q 046844 559 ADIGNFMSETEYFYFVAANNSLAGVIP-ESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDT 637 (967)
Q Consensus 559 ~~~~~~~~~l~~~~l~l~~n~l~~~~p-~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~ 637 (967)
..+. .+..++. +++..+......+ ..+..+.+++.+++++|.+.+..|..+.... +|+.|++++|++.+.++..
T Consensus 414 ~~~~-~l~~L~~--l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~--~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 414 SNFL-GLEQLEH--LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp SCCT-TCTTCCE--EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECS
T ss_pred cccc-ccccccc--hhhhhccccccccccccccccccccccccccccccccccccccch--hhhhhhhhhcccccccCch
Confidence 4433 2444444 7777777666544 4577889999999999999987787776665 9999999999865544333
Q ss_pred CCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCC-
Q 046844 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSW- 716 (967)
Q Consensus 638 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l- 716 (967)
.|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++.. |..+..+
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~ 566 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFP 566 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCC
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhh
Confidence 4999999999999999999999999999999999999999999999999999999999999999999987 8888888
Q ss_pred CCCcEEecCCccCcCcCcHHHHHHHhhc
Q 046844 717 PLLQIVDLACNKFSGRLSQKWLLTMMVA 744 (967)
Q Consensus 717 ~~L~~Ldls~N~l~g~~p~~~~~~~~~~ 744 (967)
++|+.|++++|+|+|.+...|+..++..
T Consensus 567 ~~L~~L~L~~Np~~C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCEHQSFLQWIKD 594 (635)
T ss_dssp TTCCEEECTTCCBCCSGGGHHHHHHHHH
T ss_pred CcCCEEEeeCCCCcccCCcHHHHHHHHh
Confidence 6899999999999999998888776644
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-43 Score=416.28 Aligned_cols=471 Identities=20% Similarity=0.191 Sum_probs=332.2
Q ss_pred cEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCC
Q 046844 178 QVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSIN 257 (967)
Q Consensus 178 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 257 (967)
++|++++|.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 467777777774 454444 78888888888888777778888888888888888888777888888888888888888
Q ss_pred CCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC--cEEEccCccc--c
Q 046844 258 QLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL--FHMDFSSNHF--F 332 (967)
Q Consensus 258 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~ 332 (967)
++.. ++.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~--lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK--ISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE--EECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee--cCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 7764 3333 67888888888888876 467888888899999999888875 356667777 8888888888 5
Q ss_pred ccCccccccC--cccEEECCCCCCCCCCChhhhhcccCccEEEcCCCc-------CCCCcChhccCCCCCCEEeCcCCcC
Q 046844 333 GPIPSLHKSR--NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNS-------LSGSIPRSLFLLPNLEMLQLSNNQF 403 (967)
Q Consensus 333 ~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l 403 (967)
+..|..+... ....+++++|.+.+.++...+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 5555443332 244567788887777776667778888888888876 444444 567777777777777766
Q ss_pred cccccccc--ccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECc
Q 046844 404 ENQLPEIS--NVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDIS 481 (967)
Q Consensus 404 ~~~~~~~~--~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls 481 (967)
.+...... ....++|+.|++++|.+.|.+|..+|.. ....+++|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~----------------------------~~~~l~~L~~l~l~ 284 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY----------------------------SGTSLKALSIHQVV 284 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC----------------------------CSCCCCEEEEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc----------------------------ccccCceeEecccc
Confidence 54221100 0011234444444444443333322100 01556677777777
Q ss_pred CCccCCCCC-cchhcc-CCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCc
Q 046844 482 DNQISGEVP-NWIWEV-GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPA 559 (967)
Q Consensus 482 ~n~i~~~~~-~~~~~~-~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~ 559 (967)
+|.+ .+| .++... ...+++.|++++|.+...+....+++|++|++
T Consensus 285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L------------------------------- 331 (520)
T 2z7x_B 285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF------------------------------- 331 (520)
T ss_dssp ECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC-------------------------------
T ss_pred ccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEe-------------------------------
Confidence 7777 444 333322 11245566666555544332223333444333
Q ss_pred chhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCCCcCcccCCCC
Q 046844 560 DIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGRNNLNGTLSDT 637 (967)
Q Consensus 560 ~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~ 637 (967)
++|++++.+|..+..+++|++|++++|++++ .+|..+.... +|++|++++|++++.+|..
T Consensus 332 ----------------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~--~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 332 ----------------SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK--SLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp ----------------CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT--TCCEEECCSSCCBCCGGGC
T ss_pred ----------------ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC--CCCEEECCCCcCCcccccc
Confidence 3444444455566778889999999999885 4556666655 8999999999998768877
Q ss_pred CCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC-CCCC
Q 046844 638 IFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN-KVSW 716 (967)
Q Consensus 638 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~-~~~l 716 (967)
.|..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|.++..+++|++|++++|++++. |.. +..+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~l 467 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV---PDGIFDRL 467 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC---CTTTTTTC
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc---CHHHhccC
Confidence 688899999999999999988777664 79999999999999 5777777999999999999999964 554 8899
Q ss_pred CCCcEEecCCccCcCcCcHHHH-HHHhh
Q 046844 717 PLLQIVDLACNKFSGRLSQKWL-LTMMV 743 (967)
Q Consensus 717 ~~L~~Ldls~N~l~g~~p~~~~-~~~~~ 743 (967)
++|+.|++++|+++|.++..++ ..+..
T Consensus 468 ~~L~~L~l~~N~~~c~c~~~~~~~~~~~ 495 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCSCPRIDYLSRWLN 495 (520)
T ss_dssp TTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred CcccEEECcCCCCcccCCchHHHHHHHH
Confidence 9999999999999999998777 55543
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-44 Score=429.52 Aligned_cols=467 Identities=19% Similarity=0.278 Sum_probs=289.4
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCC------C------CCCccccCCCCCcEEEccCccccccCccc
Q 046844 271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFT------G------PIPPSMANLTQLFHMDFSSNHFFGPIPSL 338 (967)
Q Consensus 271 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 338 (967)
..++.|+|+++.+.|.+|.+++++++|++|+|++|.+. + .+|... +..|+ ++++.+.+.+.++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46788888888888888888888888888888888651 1 222222 33444 555555555544432
Q ss_pred cccC--cccEEECCCCCCCCCCChhhhhcccCccEEEcC--CCcCCCCcChhccCCCCCCEEeCcCCcCccc-ccccccc
Q 046844 339 HKSR--NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG--HNSLSGSIPRSLFLLPNLEMLQLSNNQFENQ-LPEISNV 413 (967)
Q Consensus 339 ~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~ 413 (967)
.... .+..+++....+.. .....++.+.+. .|.+++ +|..+.++++|++|++++|++++. ++....
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~- 228 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE- 228 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS-
T ss_pred HHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc-
Confidence 2210 22222222111110 011112212221 355655 666666666666666666666652 000000
Q ss_pred CCCcccEEEeeCCcCCCCCChhhhc--cCCCCCEEECCCCcccccccCCCCCccCCC-CCCCCCccEEECcCCc-cCC-C
Q 046844 414 SSSVLFDLDLSGNRLEGPVPISIFF--ELRNLYTLDLSSNKFSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQ-ISG-E 488 (967)
Q Consensus 414 ~~~~L~~L~l~~n~l~~~i~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~-i~~-~ 488 (967)
+ -......+.+|..+ . ++++|++|++++|++. +.+|. +.++++|++|++++|+ +++ .
T Consensus 229 --~------~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~ 290 (636)
T 4eco_A 229 --N------ENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNL---------TKLPTFLKALPEMQLINVACNRGISGEQ 290 (636)
T ss_dssp --C------TTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTC---------SSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred --c------cccchhcccCchhh-hhcccCCCCEEEecCCcCC---------ccChHHHhcCCCCCEEECcCCCCCcccc
Confidence 0 00000000144443 4 5666666666666554 34454 6666677777777776 666 5
Q ss_pred CCcchhcc----CCCCcceeecccccccCcCC---CCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcch
Q 046844 489 VPNWIWEV----GSGNLKFLNLSHNLVVSLQE---PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADI 561 (967)
Q Consensus 489 ~~~~~~~~----~~~~L~~L~Ls~n~l~~l~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~ 561 (967)
+|..+... ..++|++|++++|.++.+|. ...+++|+.
T Consensus 291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~------------------------------------ 334 (636)
T 4eco_A 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM------------------------------------ 334 (636)
T ss_dssp HHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCE------------------------------------
T ss_pred chHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCE------------------------------------
Confidence 66655432 11223333333333333222 111233333
Q ss_pred hccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCC-ccEEECCCCcCcccCCCCCCC
Q 046844 562 GNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSST-LEVLNLGRNNLNGTLSDTIFP 640 (967)
Q Consensus 562 ~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~-L~~L~Ls~N~l~~~ip~~~~~ 640 (967)
|++++|+++|.+| .+..+++|++|++++|+++ .+|..+.... + |++|++++|.++ .+|.. +.
T Consensus 335 -----------L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--~~L~~L~Ls~N~l~-~lp~~-~~ 397 (636)
T 4eco_A 335 -----------LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT--EQVENLSFAHNKLK-YIPNI-FD 397 (636)
T ss_dssp -----------EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC--TTCCEEECCSSCCS-SCCSC-CC
T ss_pred -----------EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhc--ccCcEEEccCCcCc-ccchh-hh
Confidence 4444444444555 5556667777777777776 6776666655 5 777777777777 67765 55
Q ss_pred CCC--cccEEeCCCCccCCCCccccc-------CCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCC
Q 046844 641 GDC--GLQILDLSGNQLQGVVPKSLA-------NCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPR 711 (967)
Q Consensus 641 ~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~ 711 (967)
... +|++|++++|++++..|..|. .+++|++|++++|++++..+..+..+++|++|+|++|+++.. |.
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i---~~ 474 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI---PK 474 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC---CS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc---CH
Confidence 443 777777777777777777776 677788888888888765555566678888888888888733 44
Q ss_pred CCCC--------CCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeeccc
Q 046844 712 NKVS--------WPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKV 783 (967)
Q Consensus 712 ~~~~--------l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (967)
.... +++|+.||+++|+++ .+|..++ ...
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~------------------------------------------~~~ 511 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR------------------------------------------ATT 511 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS------------------------------------------TTT
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhh------------------------------------------hcc
Confidence 3332 238888888888887 5663320 014
Q ss_pred CCcceEEECCCCcccCCCcccccCCCCCcEEEC------CCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC
Q 046844 784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNM------SHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN 857 (967)
Q Consensus 784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~L------s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 857 (967)
++.|+.|||++|++++ +|..++.+++|+.|+| ++|++.+.+|..++++++|+.|||++|++ +.+|..+. +
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~ 587 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P 587 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence 5678899999999998 8999999999999999 56889999999999999999999999999 78898876 7
Q ss_pred CCCeEEccCCccc
Q 046844 858 FLSVLNLSYNNLV 870 (967)
Q Consensus 858 ~L~~l~ls~N~l~ 870 (967)
.|+.||+++|++.
T Consensus 588 ~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 588 NISVLDIKDNPNI 600 (636)
T ss_dssp TCCEEECCSCTTC
T ss_pred cCCEEECcCCCCc
Confidence 9999999999765
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.2e-42 Score=412.62 Aligned_cols=523 Identities=21% Similarity=0.196 Sum_probs=317.2
Q ss_pred CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302 (967)
Q Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 302 (967)
+++++|+|++|.+++..+.+|.++++|++|+|++|++......+|.++++|++|+|++|++++..+.+|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36778888888877666667777777888888777776666666777777777777777777655566777777777777
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCcccccc-Cccccc-cCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCC
Q 046844 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGP-IPSLHK-SRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS 380 (967)
Q Consensus 303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 380 (967)
++|++++..+..|+++++|++|++++|.+.+. .|..+. +.+|++|++++|++++..+.. +..+.+++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~---------- 200 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP---------- 200 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCT----------
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhh----------
Confidence 77777765555677777777777777766542 232222 335555555555554333332 33332221
Q ss_pred CCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCC
Q 046844 381 GSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLAS 460 (967)
Q Consensus 381 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 460 (967)
.....++++.|.+....+... ....++.+++.+|.....++...+..++.++...+..+.......-
T Consensus 201 ----------~~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l- 267 (635)
T 4g8a_A 201 ----------LLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL- 267 (635)
T ss_dssp ----------TCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC-
T ss_pred ----------hhhhhhhcccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc-
Confidence 012234455555443222211 2233455555555544344444456666666555443322211000
Q ss_pred CCCccCCCCCCCCCccEEECcCCccCCCC---CcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCC
Q 046844 461 SKPRAIPILKNQSQLSVLDISDNQISGEV---PNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNI 537 (967)
Q Consensus 461 ~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~ 537 (967)
.......+.....+...++..+...... +..+. ...+++.+++.++.+..+.......+++.|++.+|.+.+..
T Consensus 268 -~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 268 -EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp -SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC
T ss_pred -ccccccccccccchhhhhhhhhhhcccccchhhhhh--hhcccccccccccccccccccccchhhhhhhcccccccCcC
Confidence 0001111344445555555444332111 11111 12357777777777666655555566777777777666554
Q ss_pred CCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCC--CCCcccccC
Q 046844 538 PYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG--TIPACLITK 615 (967)
Q Consensus 538 ~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~ 615 (967)
+.....++.+++++|.+... . ....+++|+.|++++|.+.. ..+......
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~--------------------------~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 396 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNA--------------------------F--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 396 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCB--------------------------C--CCCBCTTCCEEECCSSCCBEEEECCHHHHSC
T ss_pred cccchhhhhcccccccCCCC--------------------------c--ccccccccccchhhccccccccccccchhhh
Confidence 44444444444444433221 1 12345677777777777643 233333333
Q ss_pred CCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccCCCCCCEEECCCCccccccchhhhcCCCCC
Q 046844 616 SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQ 694 (967)
Q Consensus 616 ~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 694 (967)
. +|+.++++.|.+. .++.. |..+++|+.+++..|+.....+ ..|..+++++.++++.|.+++..|..+..+++|+
T Consensus 397 ~--~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 397 I--SLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472 (635)
T ss_dssp S--CCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred h--hhhhhhccccccc-ccccc-ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence 3 6777777777766 34444 6666777777777666654433 3456666777777777777666666666666666
Q ss_pred EEEccCCccce-ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEE
Q 046844 695 VLVLRSNNFSG-HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTV 773 (967)
Q Consensus 695 ~L~L~~N~l~~-~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (967)
+|++++|++.+ .. |..+..
T Consensus 473 ~L~Ls~N~~~~~~~--~~~~~~---------------------------------------------------------- 492 (635)
T 4g8a_A 473 VLKMAGNSFQENFL--PDIFTE---------------------------------------------------------- 492 (635)
T ss_dssp EEECTTCEEGGGEE--CSCCTT----------------------------------------------------------
T ss_pred hhhhhhcccccccC--chhhhh----------------------------------------------------------
Confidence 66666665432 22 333333
Q ss_pred ccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccc
Q 046844 774 KGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQL 853 (967)
Q Consensus 774 ~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l 853 (967)
++.|+.|||++|++++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..+
T Consensus 493 ----------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 493 ----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp ----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred ----------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 4456667777777777788889999999999999999999989999999999999999999999999999
Q ss_pred cCC-CCCCeEEccCCccccCCC
Q 046844 854 ASL-NFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 854 ~~l-~~L~~l~ls~N~l~g~ip 874 (967)
..+ ++|++|++++|+++....
T Consensus 563 ~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCCTTCCEEECTTCCBCCSGG
T ss_pred HhhhCcCCEEEeeCCCCcccCC
Confidence 888 689999999999977543
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-43 Score=413.17 Aligned_cols=445 Identities=18% Similarity=0.170 Sum_probs=250.9
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECC
Q 046844 271 SSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLS 350 (967)
Q Consensus 271 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 350 (967)
++|++|++++|.+.+..|..|..+++|++|++++|++++..|..+.++++|++|++++|+++. +|.. .+.+|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH-PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC-CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc-ccCCccEEecc
Confidence 455555555555655555566666666666666666665556666666666666666666653 3333 44566666666
Q ss_pred CCCCCC-CCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCC--CEEeCcCCcC--ccccccccccCCCcccEEEeeC
Q 046844 351 FNNLSG-GISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNL--EMLQLSNNQF--ENQLPEISNVSSSVLFDLDLSG 425 (967)
Q Consensus 351 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~~~L~~L~l~~ 425 (967)
+|.+++ .+|.. ++.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+.....-......+++++
T Consensus 99 ~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 99 FNAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp SSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred CCccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 666664 34444 6666666666666666654 234445555 6666666665 3333221110000222344455
Q ss_pred CcCCCCCChhhhccCCCCCEEECCCCc----ccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCc
Q 046844 426 NRLEGPVPISIFFELRNLYTLDLSSNK----FSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNL 501 (967)
Q Consensus 426 n~l~~~i~~~~~~~l~~L~~L~Ls~n~----l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L 501 (967)
|.+.+.++...+..+++|+.+++++|. +..+. +.+|.+..+++|+.|++++|.+++..+..+..
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~------ 242 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQ------ 242 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH------HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH------
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceee------cchhhhccccchhhccccccccCHHHHHHHHH------
Confidence 555444444444444555555444443 00000 11222333444444444444333211111000
Q ss_pred ceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCccc
Q 046844 502 KFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLA 581 (967)
Q Consensus 502 ~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~ 581 (967)
....++|++ +++++|+++
T Consensus 243 ---------------~~~~~~L~~-----------------------------------------------L~l~~n~l~ 260 (520)
T 2z7x_B 243 ---------------LVWHTTVWY-----------------------------------------------FSISNVKLQ 260 (520)
T ss_dssp ---------------HHHTSSCSE-----------------------------------------------EEEEEEEEE
T ss_pred ---------------HhhhCcccE-----------------------------------------------EEeeccccc
Confidence 000112333 333333333
Q ss_pred ccCChhh-----hcCCCCcEEEcccCcCCCCCC-cccccC-CCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844 582 GVIPESV-----CKATNFQVLDLSNNNLSGTIP-ACLITK-SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654 (967)
Q Consensus 582 ~~~p~~~-----~~~~~L~~L~Ls~N~l~~~~p-~~~~~~-~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 654 (967)
|.+|..+ ..+++|+.+++++|.+ .+| ..+... ...+|+.|++++|.+.+ ++. +..+++|++|++++|+
T Consensus 261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 261 GQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC--PSKISPFLHLDFSNNL 335 (520)
T ss_dssp SCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC--CSSCCCCCEEECCSSC
T ss_pred CccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-ccc--hhhCCcccEEEeECCc
Confidence 3333333 5677788888888887 455 233222 01168888888887762 221 2567778888888888
Q ss_pred cCCCCcccccCCCCCCEEECCCCcccc--ccchhhhcCCCCCEEEccCCccceecCCCC-CCCCCCCCcEEecCCccCcC
Q 046844 655 LQGVVPKSLANCNMLQVLDLRSNYISD--NFPCWLRNASSLQVLVLRSNNFSGHISCPR-NKVSWPLLQIVDLACNKFSG 731 (967)
Q Consensus 655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~-~~~~l~~L~~Ldls~N~l~g 731 (967)
+++..|..+..+++|++|++++|++++ .+|.++.++++|++|++++|++++.+ |. .+..+++|+.|++++|++
T Consensus 336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l--~~~~~~~l~~L~~L~Ls~N~l-- 411 (520)
T 2z7x_B 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE--KKGDCSWTKSLLSLNMSSNIL-- 411 (520)
T ss_dssp CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG--GGCSCCCCTTCCEEECCSSCC--
T ss_pred cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc--ccchhccCccCCEEECcCCCC--
Confidence 887777788888888888888888876 45567777777777777777777633 32 244455555555555554
Q ss_pred cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC
Q 046844 732 RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL 811 (967)
Q Consensus 732 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L 811 (967)
++.+|..+. ++|
T Consensus 412 ------------------------------------------------------------------~~~~~~~l~--~~L 423 (520)
T 2z7x_B 412 ------------------------------------------------------------------TDTIFRCLP--PRI 423 (520)
T ss_dssp ------------------------------------------------------------------CGGGGGSCC--TTC
T ss_pred ------------------------------------------------------------------Ccchhhhhc--ccC
Confidence 444444433 466
Q ss_pred cEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCcc-ccCCCCCCeEEccCCccccCCC
Q 046844 812 YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 812 ~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip 874 (967)
+.|||++|+++ .+|..+..+++|+.|||++|++++ +|.. +..++.|++|++++|++++..+
T Consensus 424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 77777777776 666666677777777777777773 4443 6677777777777777776654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-42 Score=421.89 Aligned_cols=408 Identities=18% Similarity=0.226 Sum_probs=225.2
Q ss_pred CCCCCCccccccCCCCCCEEEccCCCCCCC-CCccccCCCCCcEEEccCccccccCcccc---ccCcccEEECCCCCCCC
Q 046844 281 TGLSGTLPDSIGNLENLTRVEVSSCNFTGP-IPPSMANLTQLFHMDFSSNHFFGPIPSLH---KSRNLNNLDLSFNNLSG 356 (967)
Q Consensus 281 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~ 356 (967)
|.+++ +|..++++++|++|+|++|++++. ++..+. ..+.|...+.+|..+ .+.+|++|++++|.+.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~--------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~ 505 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE--------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS--------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc--------ccccccccccCChhhhhccCCCCCEEECcCCCCCc
Confidence 55554 566666666666666666666651 000000 000011111244333 23456666666666655
Q ss_pred CCChhhhhcccCccEEEcCCCc-CCC-CcChhccCCC-------CCCEEeCcCCcCccccccccccCCCcccEEEeeCCc
Q 046844 357 GISSTFWEQLLNLQIVVLGHNS-LSG-SIPRSLFLLP-------NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNR 427 (967)
Q Consensus 357 ~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 427 (967)
.+|.. +.++++|++|++++|. +++ .+|..+..++ +|+.|++++|++.
T Consensus 506 ~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----------------------- 561 (876)
T 4ecn_A 506 QLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----------------------- 561 (876)
T ss_dssp SCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----------------------
T ss_pred cChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----------------------
Confidence 66654 5666666666666665 655 5555444333 6666666666555
Q ss_pred CCCCCCh-hhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCC-cceee
Q 046844 428 LEGPVPI-SIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGN-LKFLN 505 (967)
Q Consensus 428 l~~~i~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~-L~~L~ 505 (967)
.+|. ..|..+++|+.|++++|+++.+ |.+..+++|+.|++++|+++ .+|..+... ++ |+.|+
T Consensus 562 ---~ip~~~~l~~L~~L~~L~Ls~N~l~~l----------p~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l--~~~L~~L~ 625 (876)
T 4ecn_A 562 ---EFPASASLQKMVKLGLLDCVHNKVRHL----------EAFGTNVKLTDLKLDYNQIE-EIPEDFCAF--TDQVEGLG 625 (876)
T ss_dssp ---BCCCHHHHTTCTTCCEEECTTSCCCBC----------CCCCTTSEESEEECCSSCCS-CCCTTSCEE--CTTCCEEE
T ss_pred ---ccCChhhhhcCCCCCEEECCCCCcccc----------hhhcCCCcceEEECcCCccc-cchHHHhhc--cccCCEEE
Confidence 2222 1124445555555555544321 22444555555555555555 444443322 12 44444
Q ss_pred cccccccCcCCCCC---CCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccc
Q 046844 506 LSHNLVVSLQEPYS---ISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG 582 (967)
Q Consensus 506 Ls~n~l~~l~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~ 582 (967)
+++|.++.+|.... .++|+.|++++|++++.+|.... .+
T Consensus 626 Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~-----------------~l--------------------- 667 (876)
T 4ecn_A 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC-----------------SM--------------------- 667 (876)
T ss_dssp CCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS-----------------CT---------------------
T ss_pred CcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh-----------------hh---------------------
Confidence 44444333332211 12355555555555554331100 00
Q ss_pred cCChhhhcCCCCcEEEcccCcCCCCCCcccc-cCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcc
Q 046844 583 VIPESVCKATNFQVLDLSNNNLSGTIPACLI-TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPK 661 (967)
Q Consensus 583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~ 661 (967)
....+++|+.|++++|+++ .+|..+. .+. +|+.|+|++|+++ .+|...|.... .
T Consensus 668 ----~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~--~L~~L~Ls~N~L~-~ip~~~~~~~~-----------------~ 722 (876)
T 4ecn_A 668 ----DDYKGINASTVTLSYNEIQ-KFPTELFATGS--PISTIILSNNLMT-SIPENSLKPKD-----------------G 722 (876)
T ss_dssp ----TTCCCCCEEEEECCSSCCC-SCCHHHHHTTC--CCSEEECCSCCCS-CCCTTSSSCTT-----------------S
T ss_pred ----ccccCCCcCEEEccCCcCC-ccCHHHHccCC--CCCEEECCCCcCC-ccChHHhcccc-----------------c
Confidence 0012346777888888777 6666554 333 7777777777777 66666444321 0
Q ss_pred cccCCCCCCEEECCCCccccccchhhh--cCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHH
Q 046844 662 SLANCNMLQVLDLRSNYISDNFPCWLR--NASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL 739 (967)
Q Consensus 662 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~ 739 (967)
.+.+|++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ + |..+..+++|+.|+|++|+
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l--p~~l~~L~~L~~L~Ls~N~----------- 787 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F--PTQPLNSSQLKAFGIRHQR----------- 787 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C--CCGGGGCTTCCEEECCCCB-----------
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c--chhhhcCCCCCEEECCCCC-----------
Confidence 1122335555555555555 2444443 45555555555555554 2 5555555556666665553
Q ss_pred HHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC
Q 046844 740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN 819 (967)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N 819 (967)
++++|++.+.+|..|+.+++|+.|+|++|
T Consensus 788 ---------------------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 788 ---------------------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp ---------------------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ---------------------------------------------------CcccccccccChHHHhcCCCCCEEECCCC
Confidence 25678888889999999999999999999
Q ss_pred CCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcc
Q 046844 820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869 (967)
Q Consensus 820 ~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l 869 (967)
++ +.||..+. ++|+.|||++|.+...-+..+.....+..+.+++|.+
T Consensus 817 ~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 817 DI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 99 78999876 6899999999998877767766665666677777654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-40 Score=392.25 Aligned_cols=472 Identities=20% Similarity=0.173 Sum_probs=322.9
Q ss_pred CCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEe
Q 046844 174 LPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLD 253 (967)
Q Consensus 174 l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (967)
+...++++++++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3445788888888876 454443 7888888888888888878888888888888888888877788888888888888
Q ss_pred ccCCCCCCCCCCCCCCCCCCCEEEccCCCCCC-CccccccCCCCCCEEEccCCCCCCCCCccccCCCCC--cEEEccCcc
Q 046844 254 LSINQLLQGSLPNFPKNSSLRDLILSHTGLSG-TLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQL--FHMDFSSNH 330 (967)
Q Consensus 254 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~ 330 (967)
+++|++... +.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~~l--p~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQNI--SCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCCEE--CSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCCcc--Ccc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 888887643 333 78888899998888886 3467888999999999999988753 34445555 899999888
Q ss_pred c--cccCccccccC--cccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCC----CCcChhccCCCCCCEEeCcCCc
Q 046844 331 F--FGPIPSLHKSR--NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLS----GSIPRSLFLLPNLEMLQLSNNQ 402 (967)
Q Consensus 331 l--~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~ 402 (967)
+ ++..|..+... ..-.+++++|.+.+.++...+..+++|+.+++++|... ......+..+++|+.+++.++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 8 66655544332 22256778888877777665677888888888887521 0122345667777777777665
Q ss_pred Ccccccc--ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEEC
Q 046844 403 FENQLPE--ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDI 480 (967)
Q Consensus 403 l~~~~~~--~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~L 480 (967)
+.+.... .......+|++|++++|.++|.+|..+|... ...++.|+.+++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~----------------------------~~~L~~L~~~~~ 312 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS----------------------------ETALKSLMIEHV 312 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC----------------------------SCSCCEEEEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc----------------------------cccchheehhhc
Confidence 5432110 0001123555555555555555544332110 123334444444
Q ss_pred cCCccCCCCC-cchhcc-CCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCC
Q 046844 481 SDNQISGEVP-NWIWEV-GSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIP 558 (967)
Q Consensus 481 s~n~i~~~~~-~~~~~~-~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~ 558 (967)
+.+.+ .+| .++... ...+++.|++++|.+..++....+++|++
T Consensus 313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~--------------------------------- 357 (562)
T 3a79_B 313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF--------------------------------- 357 (562)
T ss_dssp EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE---------------------------------
T ss_pred cccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE---------------------------------
Confidence 44444 233 111111 11234444444444333221112223333
Q ss_pred cchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCCCcCcccCCC
Q 046844 559 ADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGRNNLNGTLSD 636 (967)
Q Consensus 559 ~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~ 636 (967)
+++++|.+++.+|..+..+++|++|++++|++++ .+|..+.... +|++|++++|++++.+|.
T Consensus 358 --------------L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 358 --------------LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS--SLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp --------------EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT--TCCEEECTTSCCBSCCSS
T ss_pred --------------EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC--CCCEEECCCCcCCCccCh
Confidence 4444444555556667778899999999999985 2234455555 899999999999977888
Q ss_pred CCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC-CCC
Q 046844 637 TIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN-KVS 715 (967)
Q Consensus 637 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~-~~~ 715 (967)
..|..+++|++|++++|++++..|..+. ++|++|++++|+++. +|.++.++++|++|+|++|++++. |.. +..
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~ 495 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSV---PDGVFDR 495 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCC---CTTSTTT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCC---CHHHHhc
Confidence 7799999999999999999987776654 799999999999995 666667999999999999999965 555 889
Q ss_pred CCCCcEEecCCccCcCcCcHHHHH
Q 046844 716 WPLLQIVDLACNKFSGRLSQKWLL 739 (967)
Q Consensus 716 l~~L~~Ldls~N~l~g~~p~~~~~ 739 (967)
+++|+.|++++|+++|.+|..++.
T Consensus 496 l~~L~~L~l~~N~~~c~c~~~~~~ 519 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCPGIRYL 519 (562)
T ss_dssp CTTCCCEECCSCCBCCCHHHHHHH
T ss_pred CCCCCEEEecCCCcCCCcchHHHH
Confidence 999999999999999999988773
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-40 Score=390.98 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=127.2
Q ss_pred hcCCCCcEEEcccCcCCCCCCcc-cccC-CCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCC
Q 046844 589 CKATNFQVLDLSNNNLSGTIPAC-LITK-SSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666 (967)
Q Consensus 589 ~~~~~L~~L~Ls~N~l~~~~p~~-~~~~-~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 666 (967)
..++.|+.++++.|.+ .+|.. +... ...+|+.|++++|.+. .++ .+..+++|++|++++|++++..|..+.++
T Consensus 302 ~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 302 TALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp CSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC
T ss_pred ccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhccc
Confidence 3445555666666665 44421 1111 0115777777777765 222 12556777777777777777777777777
Q ss_pred CCCCEEECCCCccccc--cchhhhcCCCCCEEEccCCccceecCCCC-CCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844 667 NMLQVLDLRSNYISDN--FPCWLRNASSLQVLVLRSNNFSGHISCPR-NKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV 743 (967)
Q Consensus 667 ~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~p~-~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 743 (967)
++|++|++++|++++. +|..+.++++|++|++++|++++.+ |. .+..+++|+.|++++|++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~l~~L~~L~l~~n~l-------------- 440 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA--YDRTCAWAESILVLNLSSNML-------------- 440 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC--SSCCCCCCTTCCEEECCSSCC--------------
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc--ChhhhcCcccCCEEECCCCCC--------------
Confidence 7777777777777763 3455667777777777777776633 32 344455555555555554
Q ss_pred cccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcc
Q 046844 744 AETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG 823 (967)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g 823 (967)
++.+|..+. ++|+.|+|++|+++
T Consensus 441 ------------------------------------------------------~~~~~~~l~--~~L~~L~L~~N~l~- 463 (562)
T 3a79_B 441 ------------------------------------------------------TGSVFRCLP--PKVKVLDLHNNRIM- 463 (562)
T ss_dssp ------------------------------------------------------CGGGGSSCC--TTCSEEECCSSCCC-
T ss_pred ------------------------------------------------------Ccchhhhhc--CcCCEEECCCCcCc-
Confidence 444444333 46667777777776
Q ss_pred cCCccccCCCCCCeEeCcCccccccCCcc-ccCCCCCCeEEccCCccccCCC
Q 046844 824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 824 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip 874 (967)
.||..+.++++|+.|||++|++++ +|.. +..++.|+++++++|+++|.+|
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 566666677777777777777773 4444 6677777777777777776665
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-39 Score=368.58 Aligned_cols=394 Identities=23% Similarity=0.307 Sum_probs=195.6
Q ss_pred cccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcc
Q 046844 339 HKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVL 418 (967)
Q Consensus 339 ~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 418 (967)
....+|++|++++|.+ +.+|.. ++++++|++|++++|.+.+.+|..++.+.+|+.+++..|.. ..+
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l 73 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQA 73 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTC
T ss_pred cccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCC
Confidence 3445777788888877 677776 78888888888888888888888888777765555444431 234
Q ss_pred cEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCC
Q 046844 419 FDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGS 498 (967)
Q Consensus 419 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 498 (967)
++|++++|.+++ +|. ..++|++|++++|+++.+ |. ..++|++|++++|++++ ++.. .
T Consensus 74 ~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~l----------p~--~~~~L~~L~l~~n~l~~-l~~~-----~ 130 (454)
T 1jl5_A 74 HELELNNLGLSS-LPE----LPPHLESLVASCNSLTEL----------PE--LPQSLKSLLVDNNNLKA-LSDL-----P 130 (454)
T ss_dssp SEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSSC----------CC--CCTTCCEEECCSSCCSC-CCSC-----C
T ss_pred CEEEecCCcccc-CCC----CcCCCCEEEccCCcCCcc----------cc--ccCCCcEEECCCCccCc-ccCC-----C
Confidence 555666665552 332 125666666666666532 21 12466667777766663 2221 1
Q ss_pred CCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCC
Q 046844 499 GNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANN 578 (967)
Q Consensus 499 ~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n 578 (967)
++|++|++++|.++.+|....+++|++|++++|++++ +|...+++++|++++|+++.+|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~-------------------- 189 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELP-------------------- 189 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC--------------------
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCc--------------------
Confidence 3567777777777666655556777777777777775 4444456666666666555544
Q ss_pred cccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCC
Q 046844 579 SLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGV 658 (967)
Q Consensus 579 ~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 658 (967)
.++.+++|++|++++|++++ +|... . +|++|++++|.++ .+|. |..+++|++|++++|++++
T Consensus 190 --------~~~~l~~L~~L~l~~N~l~~-l~~~~---~--~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~- 251 (454)
T 1jl5_A 190 --------ELQNLPFLTAIYADNNSLKK-LPDLP---L--SLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT- 251 (454)
T ss_dssp --------CCTTCTTCCEEECCSSCCSS-CCCCC---T--TCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-
T ss_pred --------cccCCCCCCEEECCCCcCCc-CCCCc---C--cccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-
Confidence 23445556666666666653 33321 1 5666666666665 5552 5556666666666666654
Q ss_pred CcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHH
Q 046844 659 VPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWL 738 (967)
Q Consensus 659 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~ 738 (967)
+|.. .++|+.|++++|++++ +|.. .++|+.|++++|++++....| ++|+.|++++|++++. +
T Consensus 252 l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~------~~L~~L~l~~N~l~~i-~---- 313 (454)
T 1jl5_A 252 LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELP------PNLYYLNASSNEIRSL-C---- 313 (454)
T ss_dssp CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCC------TTCCEEECCSSCCSEE-C----
T ss_pred cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcC------CcCCEEECcCCcCCcc-c----
Confidence 2321 2556666666666655 3322 255666666666665532111 4556666666655431 1
Q ss_pred HHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCC
Q 046844 739 LTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSH 818 (967)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~ 818 (967)
..++.++.|++++|++++ +|.. +++|++|+|++
T Consensus 314 -------------------------------------------~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 314 -------------------------------------------DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 346 (454)
T ss_dssp -------------------------------------------CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred -------------------------------------------CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCC
Confidence 012345556666666654 4443 35566666666
Q ss_pred CCCcccCCccccCCCCCCeEeCcCccccc--cCCccccCC-------------CCCCeEEccCCcccc--CCCCCC
Q 046844 819 NALTGSIPSSFGNLKEIESLDLSMNNLSG--KIPAQLASL-------------NFLSVLNLSYNNLVG--KIPTST 877 (967)
Q Consensus 819 N~l~g~ip~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l-------------~~L~~l~ls~N~l~g--~ip~~~ 877 (967)
|+++ .+|. .+++|+.||+++|+++| .+|.++.++ ++|++||+++|+++| .||...
T Consensus 347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 6665 3454 34566666666666666 555555555 789999999999998 888653
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1e-38 Score=365.28 Aligned_cols=421 Identities=21% Similarity=0.300 Sum_probs=224.7
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEEC
Q 046844 270 NSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDL 349 (967)
Q Consensus 270 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L 349 (967)
.+.|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++.+|+.+++..|.. .++++|++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~l 78 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELEL 78 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEEC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEEe
Confidence 35677777777777 57777778888888888888877777777777777776666665542 25677777
Q ss_pred CCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCC
Q 046844 350 SFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLE 429 (967)
Q Consensus 350 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 429 (967)
++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++.+. +. .
T Consensus 79 ~~~~l~~-lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~----~--------------- 129 (454)
T 1jl5_A 79 NNLGLSS-LPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD----L--------------- 129 (454)
T ss_dssp TTSCCSC-CCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS----C---------------
T ss_pred cCCcccc-CCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC----C---------------
Confidence 7777764 3321 3567777777777765 4432 35666666666666531 11 0
Q ss_pred CCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccc
Q 046844 430 GPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHN 509 (967)
Q Consensus 430 ~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n 509 (967)
.++|++|++++|+++. +|.+.++++|++|++++|++++ +|... ++|++|++++|
T Consensus 130 ----------~~~L~~L~L~~n~l~~----------lp~~~~l~~L~~L~l~~N~l~~-lp~~~-----~~L~~L~L~~n 183 (454)
T 1jl5_A 130 ----------PPLLEYLGVSNNQLEK----------LPELQNSSFLKIIDVDNNSLKK-LPDLP-----PSLEFIAAGNN 183 (454)
T ss_dssp ----------CTTCCEEECCSSCCSS----------CCCCTTCTTCCEEECCSSCCSC-CCCCC-----TTCCEEECCSS
T ss_pred ----------CCCCCEEECcCCCCCC----------CcccCCCCCCCEEECCCCcCcc-cCCCc-----ccccEEECcCC
Confidence 1345555555554442 2234555556666666665553 33322 24666666666
Q ss_pred cccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhh
Q 046844 510 LVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC 589 (967)
Q Consensus 510 ~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~ 589 (967)
.++.++....+++|+.|++++|++++ +|..++++++|++++|.++.+| .++
T Consensus 184 ~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp----------------------------~~~ 234 (454)
T 1jl5_A 184 QLEELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELP----------------------------ELQ 234 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCC----------------------------CCT
T ss_pred cCCcCccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCccc----------------------------ccC
Confidence 66666655556777888888887776 3434456666666666555443 245
Q ss_pred cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
.+++|++|++++|++++ +|... ++|+.|++++|++++ +|.. .++|++|++++|++++. |.. .++|
T Consensus 235 ~l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls~N~l~~l-~~~---~~~L 299 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKT-LPDLP-----PSLEALNVRDNYLTD-LPEL----PQSLTFLDVSENIFSGL-SEL---PPNL 299 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCSCC-----TTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSEE-SCC---CTTC
T ss_pred CCCCCCEEECCCCcCCc-ccccc-----cccCEEECCCCcccc-cCcc----cCcCCEEECcCCccCcc-cCc---CCcC
Confidence 57788888888888874 55432 278888888888874 6654 26788888888888763 211 2578
Q ss_pred CEEECCCCccccccchhhhcC-CCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844 670 QVLDLRSNYISDNFPCWLRNA-SSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS 748 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~ 748 (967)
+.|++++|++++. + .+ ++|++|++++|++++. |.. +++|+.||+++|++++ +|.
T Consensus 300 ~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~l---p~~---~~~L~~L~L~~N~l~~-lp~------------- 354 (454)
T 1jl5_A 300 YYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIEL---PAL---PPRLERLIASFNHLAE-VPE------------- 354 (454)
T ss_dssp CEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCSC-CCC-------------
T ss_pred CEEECcCCcCCcc-c----CCcCcCCEEECCCCccccc---ccc---CCcCCEEECCCCcccc-ccc-------------
Confidence 8888888888762 2 22 5788888888888863 443 4778888888888763 441
Q ss_pred CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC--CCcccccCCCCCcEEECCCCCCcccCC
Q 046844 749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG--PIPVEMGRFRSLYALNMSHNALTGSIP 826 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g--~ip~~~~~l~~L~~L~Ls~N~l~g~ip 826 (967)
.++.|+.||+++|+++| .+|..++.+ +.|.+.|.+|
T Consensus 355 ----------------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~ 392 (454)
T 1jl5_A 355 ----------------------------------LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVP 392 (454)
T ss_dssp ----------------------------------CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC------
T ss_pred ----------------------------------hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccc
Confidence 24567888888888888 777766543 4577888888
Q ss_pred ccccCCCCCCeEeCcCccccc--cCCccccCCCCCCeEEccCCccccCCCCC
Q 046844 827 SSFGNLKEIESLDLSMNNLSG--KIPAQLASLNFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 827 ~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 876 (967)
.. +++|+.||+++|+++| .+|.+ ++.|.+.+|.+.+++|..
T Consensus 393 ~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 393 EL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ----------------------------------------------------
T ss_pred cc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 74 5789999999999998 78865 455668888888887743
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.1e-37 Score=353.04 Aligned_cols=400 Identities=20% Similarity=0.198 Sum_probs=258.3
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCC-CccccCCCCCcEEEccCc
Q 046844 251 TLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPI-PPSMANLTQLFHMDFSSN 329 (967)
Q Consensus 251 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n 329 (967)
.++.+++.+...+ .+ .++|++|++++|.+++..|..++.+++|++|++++|.+.+.+ +..+..+++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp--~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVP--EL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCC--CC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCC--CC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555543322 22 256777777777777666667777777777777777665433 445666777777777777
Q ss_pred cccccCcccc-ccCcccEEECCCCCCCCCCCh-hhhhcccCccEEEcCCCcCCCCcChh-ccCCCCCCEEeCcCCcCccc
Q 046844 330 HFFGPIPSLH-KSRNLNNLDLSFNNLSGGISS-TFWEQLLNLQIVVLGHNSLSGSIPRS-LFLLPNLEMLQLSNNQFENQ 406 (967)
Q Consensus 330 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~ 406 (967)
.+.+..|..+ .+.+|++|++++|.+++.++. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 6665544332 233666666666666543221 12445555666666665555544443 45555555555555555443
Q ss_pred cccccccCCCcccEEEeeCCcCCCCCChhhhccC--CCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCc
Q 046844 407 LPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL--RNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQ 484 (967)
Q Consensus 407 ~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l--~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~ 484 (967)
.+. .+ ..+ ++|+.|++++|.+..+..........+.+..+++|++|++++|+
T Consensus 170 ~~~-------------------------~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 170 CEE-------------------------DL-LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CTT-------------------------TS-GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred Chh-------------------------hh-hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 322 11 222 34555555555544332211110011113345667777777777
Q ss_pred cCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhcc
Q 046844 485 ISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNF 564 (967)
Q Consensus 485 i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~ 564 (967)
+++..|..+.... ..++++.|++++|.+.+... ..+
T Consensus 224 l~~~~~~~~~~~~---------------------~~~~L~~L~l~~~~~~~~~~-----------~~~------------ 259 (455)
T 3v47_A 224 FKESMAKRFFDAI---------------------AGTKIQSLILSNSYNMGSSF-----------GHT------------ 259 (455)
T ss_dssp CCHHHHHHHHHHT---------------------TTCCEEEEECTTCTTTSCCT-----------TCC------------
T ss_pred ccccchhhhhccc---------------------cccceeeEeecccccccccc-----------chh------------
Confidence 7665555544321 12345555555555443211 001
Q ss_pred ccccceeeeeecCCcccccCChhhh--cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCC
Q 046844 565 MSETEYFYFVAANNSLAGVIPESVC--KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD 642 (967)
Q Consensus 565 ~~~l~~~~l~l~~n~l~~~~p~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l 642 (967)
.+.+..+..+. ..++|+.|++++|++++..|..+.... +|++|++++|++++..|.. |..+
T Consensus 260 --------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~-~~~l 322 (455)
T 3v47_A 260 --------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEINKIDDNA-FWGL 322 (455)
T ss_dssp --------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT--TCCEEECTTSCCCEECTTT-TTTC
T ss_pred --------------hhccCcccccccccccCceEEEecCccccccchhhcccCC--CCCEEECCCCcccccChhH-hcCc
Confidence 11111111122 246899999999999988888887776 9999999999999666666 9999
Q ss_pred CcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEE
Q 046844 643 CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIV 722 (967)
Q Consensus 643 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~L 722 (967)
++|++|+|++|++++..|..|..+++|++|++++|++++..|.+|.++++|++|+|++|++++.. +..+..+++|+.|
T Consensus 323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L 400 (455)
T 3v47_A 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--DGIFDRLTSLQKI 400 (455)
T ss_dssp TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEE
T ss_pred ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC--HhHhccCCcccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999865 5677899999999
Q ss_pred ecCCccCcCcCc-HHHHHHHhh
Q 046844 723 DLACNKFSGRLS-QKWLLTMMV 743 (967)
Q Consensus 723 dls~N~l~g~~p-~~~~~~~~~ 743 (967)
++++|+++|.+| ..++..+..
T Consensus 401 ~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 401 WLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp ECCSSCBCCCTTTTHHHHHHHH
T ss_pred EccCCCcccCCCcchHHHHHHH
Confidence 999999999999 344444443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-36 Score=347.27 Aligned_cols=191 Identities=19% Similarity=0.171 Sum_probs=142.3
Q ss_pred CcccEEeCCCCccCCCCcccccCC---CCCCEEECCCCcccc----------ccchhhhc--CCCCCEEEccCCccceec
Q 046844 643 CGLQILDLSGNQLQGVVPKSLANC---NMLQVLDLRSNYISD----------NFPCWLRN--ASSLQVLVLRSNNFSGHI 707 (967)
Q Consensus 643 ~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~----------~~p~~l~~--l~~L~~L~L~~N~l~~~~ 707 (967)
++|++|++++|++++..|..+... ++|+.|++++|.+.+ ..+..+.. .++|+.|++++|++++..
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 445555555555554444444322 455555555553322 22223333 357788888888887776
Q ss_pred CCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcc
Q 046844 708 SCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIF 787 (967)
Q Consensus 708 ~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 787 (967)
|..+..+++|+.|++++|++++..|..+ ..++.|
T Consensus 292 --~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------------------------------------~~l~~L 325 (455)
T 3v47_A 292 --KSVFSHFTDLEQLTLAQNEINKIDDNAF--------------------------------------------WGLTHL 325 (455)
T ss_dssp --TTTTTTCTTCCEEECTTSCCCEECTTTT--------------------------------------------TTCTTC
T ss_pred --hhhcccCCCCCEEECCCCcccccChhHh--------------------------------------------cCcccC
Confidence 7777778888888888888776555322 135678
Q ss_pred eEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCC
Q 046844 788 TSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 867 (967)
Q Consensus 788 ~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N 867 (967)
+.|++++|++++..|..|+.+++|++|+|++|++++.+|..|+++++|+.|||++|++++..+..+..++.|++|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 88888888888888999999999999999999999999999999999999999999999988788899999999999999
Q ss_pred ccccCCCCCCcC
Q 046844 868 NLVGKIPTSTQL 879 (967)
Q Consensus 868 ~l~g~ip~~~~~ 879 (967)
+++|.+|....+
T Consensus 406 ~l~~~~~~~~~l 417 (455)
T 3v47_A 406 PWDCSCPRIDYL 417 (455)
T ss_dssp CBCCCTTTTHHH
T ss_pred CcccCCCcchHH
Confidence 999999965433
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-36 Score=342.39 Aligned_cols=357 Identities=19% Similarity=0.166 Sum_probs=231.4
Q ss_pred CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccE
Q 046844 267 FPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNN 346 (967)
Q Consensus 267 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~ 346 (967)
+..+++|++|++++|.+++. | .++.+++|++|++++|++++. | +..+++|++|++++|.+++. + +..+++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCE
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-cCCCCcCCE
Confidence 33456666666666666643 3 456666666666666666543 2 55566666666666665543 2 333445555
Q ss_pred EECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCC
Q 046844 347 LDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGN 426 (967)
Q Consensus 347 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 426 (967)
|++++|++++ ++ ++.+++|++|++++|.+++. .+..+++|++|++++|+.
T Consensus 111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~----------------------- 160 (457)
T 3bz5_A 111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKK----------------------- 160 (457)
T ss_dssp EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSC-----------------------
T ss_pred EECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCc-----------------------
Confidence 5555555553 22 44555555555555555542 144555555555555533
Q ss_pred cCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeec
Q 046844 427 RLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNL 506 (967)
Q Consensus 427 ~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L 506 (967)
.+.++ +..+++|+.|++++|+++.+ | +..+++|+.|++++|++++. + +. ..++|++|++
T Consensus 161 --~~~~~---~~~l~~L~~L~ls~n~l~~l----------~-l~~l~~L~~L~l~~N~l~~~-~--l~--~l~~L~~L~L 219 (457)
T 3bz5_A 161 --ITKLD---VTPQTQLTTLDCSFNKITEL----------D-VSQNKLLNRLNCDTNNITKL-D--LN--QNIQLTFLDC 219 (457)
T ss_dssp --CCCCC---CTTCTTCCEEECCSSCCCCC----------C-CTTCTTCCEEECCSSCCSCC-C--CT--TCTTCSEEEC
T ss_pred --ccccc---cccCCcCCEEECCCCcccee----------c-cccCCCCCEEECcCCcCCee-c--cc--cCCCCCEEEC
Confidence 22332 24455555555555555432 2 34455566666666655543 1 11 2245666666
Q ss_pred ccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCCh
Q 046844 507 SHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPE 586 (967)
Q Consensus 507 s~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~ 586 (967)
++|+++.+| ...+++|+.|++++|++++..+..+++++.|++++|+++. +++++|.+.+.+|
T Consensus 220 s~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~----------------L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 220 SSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE----------------IDLTHNTQLIYFQ- 281 (457)
T ss_dssp CSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC----------------CCCTTCTTCCEEE-
T ss_pred cCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE----------------EECCCCccCCccc-
Confidence 666666655 4446677888888888877766667788888877776542 7778888888877
Q ss_pred hhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCC
Q 046844 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANC 666 (967)
Q Consensus 587 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 666 (967)
+..+++|+.|++++|.+.+.+|... . .|+.|++++| ++|++|++++|++++. + ++.|
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~~~---~--~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l 338 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDCQA---A--GITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHN 338 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEECTT---C--CCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTC
T ss_pred -ccccccCCEEECCCCcccceeccCC---C--cceEechhhc--------------ccCCEEECCCCccccc-c--cccC
Confidence 4678999999999999887777422 2 5666655444 6899999999999985 3 8999
Q ss_pred CCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHH
Q 046844 667 NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKW 737 (967)
Q Consensus 667 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~ 737 (967)
++|+.||+++|++++. +.|..|++++|.++|. ..+..|+.+|+++|+++|.+|..+
T Consensus 339 ~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CcCcEEECCCCCCCCc--------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhH
Confidence 9999999999999872 4566778999999986 245678889999999999999765
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.8e-34 Score=328.72 Aligned_cols=347 Identities=17% Similarity=0.176 Sum_probs=233.7
Q ss_pred CCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcch
Q 046844 414 SSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWI 493 (967)
Q Consensus 414 ~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~ 493 (967)
.++.|+.|++++|.+++ +| . +..+++|++|++++|+++.+ | +..+++|++|++++|++++. + +
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~----------~-~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL----------D-LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC----------C-CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE----------c-cccCCCCCEEECcCCCCcee-e--c
Confidence 45677777777777774 44 3 36777777777777777643 2 55667777777777777753 2 2
Q ss_pred hccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeee
Q 046844 494 WEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYF 573 (967)
Q Consensus 494 ~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l 573 (967)
. ..++|++|++++|.++.++ ...+++|++|++++|++++......+++++|+
T Consensus 103 ~--~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~------------------------- 154 (457)
T 3bz5_A 103 T--PLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELD------------------------- 154 (457)
T ss_dssp T--TCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEE-------------------------
T ss_pred C--CCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEE-------------------------
Confidence 2 2345777777777666654 44466666666666666654222334444444
Q ss_pred eecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCC
Q 046844 574 VAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGN 653 (967)
Q Consensus 574 ~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N 653 (967)
+++|...+.+ .+..+++|++|++++|++++ +| +.... +|+.|++++|++++ ++ +..+++|++|++++|
T Consensus 155 -l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~--~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 155 -CHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNK--LLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSN 222 (457)
T ss_dssp -CTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCT--TCCEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred -CCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCC--CCCEEECcCCcCCe-ec---cccCCCCCEEECcCC
Confidence 4444433333 24556677777777777764 44 33333 67777777777764 32 566677777777777
Q ss_pred ccCCCCcccccCCCCCCEEECCCCccccccchhhhcCC-------CCCEEEccCCccceecCCCCCCCCCCCCcEEecCC
Q 046844 654 QLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNAS-------SLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLAC 726 (967)
Q Consensus 654 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-------~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~ 726 (967)
++++ +| +..+++|+.|++++|++++..+..+.+++ +|+.|++++|++.|.+ | ...+++|+.||+++
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~--~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF--Q--AEGCRKIKELDVTH 295 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE--E--CTTCTTCCCCCCTT
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc--c--ccccccCCEEECCC
Confidence 7776 34 66677777777777777765544443333 4566777777777766 4 46789999999999
Q ss_pred ccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCccccc
Q 046844 727 NKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMG 806 (967)
Q Consensus 727 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~ 806 (967)
|++.|.+|... .....+ .....+.|+.|++++|+++|. | ++
T Consensus 296 n~~l~~l~~~~------------~~L~~L------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~ 336 (457)
T 3bz5_A 296 NTQLYLLDCQA------------AGITEL------------------------DLSQNPKLVYLYLNNTELTEL-D--VS 336 (457)
T ss_dssp CTTCCEEECTT------------CCCSCC------------------------CCTTCTTCCEEECTTCCCSCC-C--CT
T ss_pred CcccceeccCC------------CcceEe------------------------chhhcccCCEEECCCCccccc-c--cc
Confidence 99988887321 000000 012457899999999999994 4 99
Q ss_pred CCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844 807 RFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 807 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 876 (967)
.++.|+.||+++|+++| ++.|+.|++++|+++|. ..+..|..+++++|+++|.||..
T Consensus 337 ~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 337 HNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 99999999999999997 35677889999999997 24566888999999999999965
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5e-35 Score=318.71 Aligned_cols=259 Identities=30% Similarity=0.490 Sum_probs=217.6
Q ss_pred CCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCC-CcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844 592 TNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGR-NNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~-N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 668 (967)
.+++.|++++|.+++ .+|..+.... +|++|++++ |.+.+.+|.. |..+++|++|+|++|++++.+|..|..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC--CCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 456777777777776 6777776655 777777774 7777777766 777778888888888888778888888888
Q ss_pred CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCC-CCcEEecCCccCcCcCcHHHHHHHhhcccC
Q 046844 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETK 747 (967)
Q Consensus 669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~-~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~ 747 (967)
|++|++++|++++.+|..+.++++|++|++++|+++|.+ |..+..++ +|+.|++++|+++|.+|..+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~--------- 195 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFA--------- 195 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGG---------
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhcCcEEECcCCeeeccCChHHh---------
Confidence 888888888888888888888888888888888888776 77788877 888888888888877774331
Q ss_pred CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCc
Q 046844 748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPS 827 (967)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~ 827 (967)
.+. |+.|++++|++++.+|..|+.+++|+.|+|++|++++.+|.
T Consensus 196 -----------------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 196 -----------------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp -----------------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred -----------------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 233 88899999999999999999999999999999999988887
Q ss_pred cccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCCCCCCCCC
Q 046844 828 SFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYGPPLTNES 902 (967)
Q Consensus 828 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~~~~c 902 (967)
++.+++|+.|||++|+++|.+|..+..++.|++|++++|+++|.+|...++..+....+.||+.+||.|+. .|
T Consensus 240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 89999999999999999999999999999999999999999999999877788888889999999998875 46
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.3e-33 Score=319.55 Aligned_cols=216 Identities=28% Similarity=0.322 Sum_probs=135.2
Q ss_pred hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668 (967)
Q Consensus 589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 668 (967)
..+++|+.|++++|.+++ ++ .+..+. +|++|++++|.+.+..| +..+++|++|++++|++++. ..+..+++
T Consensus 174 ~~l~~L~~L~l~~n~l~~-~~-~l~~l~--~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 244 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSD-IS-VLAKLT--NLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTN 244 (466)
T ss_dssp TTCTTCCEEECCSSCCCC-CG-GGGGCT--TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred ccCCCCCEEECcCCcCCC-Ch-hhccCC--CCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCC
Confidence 344555555555555542 22 233333 55555555555553333 34455566666666666543 34556666
Q ss_pred CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS 748 (967)
Q Consensus 669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~ 748 (967)
|+.|++++|++++..| +..+++|+.|++++|++++.. + +..+++|+.|++++|++++..| +
T Consensus 245 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~L~~n~l~~~~~--~----------- 305 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--P--LAGLTALTNLELNENQLEDISP--I----------- 305 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--G--GTTCTTCSEEECCSSCCSCCGG--G-----------
T ss_pred CCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc--c--ccCCCccCeEEcCCCcccCchh--h-----------
Confidence 6666666666665544 556666666666666666543 2 5566666666666666654332 0
Q ss_pred CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc
Q 046844 749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS 828 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 828 (967)
..++.|+.|++++|++++..| ++.+++|+.|++++|.+++. ..
T Consensus 306 ---------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 306 ---------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ---------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ---------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 134567777777777777655 67777888888888888764 45
Q ss_pred ccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844 829 FGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871 (967)
Q Consensus 829 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 871 (967)
++++++|+.|++++|++++.+| +..++.|+.|++++|.++|
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7778888888888888887776 7778888888888888877
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.5e-35 Score=317.80 Aligned_cols=274 Identities=30% Similarity=0.413 Sum_probs=190.9
Q ss_pred CCCCcCCCCCCCCCCCcc--cceeEeCCC---CcEEEEECCCCCccc--ccCCCCCCcCCCCCCeeeCCC-CCCCCCCCC
Q 046844 14 PSTKLSQWSSHQSSDCCD--WSGVRCDEA---GHVIGLDLSWEPIIG--GLENATGLFDLQYLQSLNLGF-TLFKGFQIP 85 (967)
Q Consensus 14 ~~~~l~~w~~~~~~~~c~--w~gv~C~~~---~~v~~L~L~~~~l~g--~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~lp 85 (967)
|+..+++| ..++|||. |.||+|+.. ++|++|+|+++.+.| .+ +..+.++++|++|+|++ |.+.+. +|
T Consensus 20 ~~~~l~~W--~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~~n~l~~~-~p 94 (313)
T 1ogq_A 20 NPTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI--PSSLANLPYLNFLYIGGINNLVGP-IP 94 (313)
T ss_dssp CCGGGTTC--CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC--CGGGGGCTTCSEEEEEEETTEESC-CC
T ss_pred CcccccCC--CCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc--ChhHhCCCCCCeeeCCCCCccccc-CC
Confidence 34478999 66789999 999999864 799999999999998 67 78999999999999995 888876 89
Q ss_pred ccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcch
Q 046844 86 SRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGT 165 (967)
Q Consensus 86 ~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~ 165 (967)
..++++++|++|++++|.+.+.+|..++++++|++|++++|....
T Consensus 95 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----------------------------------- 139 (313)
T 1ogq_A 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----------------------------------- 139 (313)
T ss_dssp GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-----------------------------------
T ss_pred hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-----------------------------------
Confidence 999999999999999999999999999999999999998852110
Q ss_pred hHHHHhcCCCCccEEEccCCCCCCCCcccccCCC-CCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhcc
Q 046844 166 EWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSR-SLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKIL 244 (967)
Q Consensus 166 ~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 244 (967)
..+..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+++..|..+.
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 0122345566666777777777666677777776 777777777777766676676665 77777777777766666666
Q ss_pred CCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 046844 245 HVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHM 324 (967)
Q Consensus 245 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 324 (967)
.+++|++|++++|.+. ...+.+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+
T Consensus 219 ~l~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp TTSCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred cCCCCCEEECCCCcee-eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 6666666666666542 22222344445555555555554444444444555555555555444444433 444444444
Q ss_pred EccCcc
Q 046844 325 DFSSNH 330 (967)
Q Consensus 325 ~L~~n~ 330 (967)
++++|+
T Consensus 297 ~l~~N~ 302 (313)
T 1ogq_A 297 AYANNK 302 (313)
T ss_dssp GTCSSS
T ss_pred HhcCCC
Confidence 444443
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.5e-32 Score=314.35 Aligned_cols=346 Identities=27% Similarity=0.317 Sum_probs=189.6
Q ss_pred CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCE
Q 046844 41 GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVT 120 (967)
Q Consensus 41 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 120 (967)
.+++.|++.++.+.. + +.+..+++|++|+|++|.+.+ +|. ++++++|++|++++|.+.+ ++. ++++++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l---~~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-I---DGVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCC-C---TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred ccccEEecCCCCCcc-C---cchhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCE
Confidence 467777777766542 2 346667777777777777763 344 6777777777777777763 333 677777777
Q ss_pred EeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCC
Q 046844 121 LDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRS 200 (967)
Q Consensus 121 L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~ 200 (967)
|++++|.... ++. +.++++|++|++++|.+.... .+..+++|++|+++ +.+.+.. .+.++++
T Consensus 117 L~L~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~ 178 (466)
T 1o6v_A 117 LTLFNNQITD---------IDP-LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFG-NQVTDLK--PLANLTT 178 (466)
T ss_dssp EECCSSCCCC---------CGG-GTTCTTCSEEEEEEEEECCCG-----GGTTCTTCSEEEEE-ESCCCCG--GGTTCTT
T ss_pred EECCCCCCCC---------ChH-HcCCCCCCEEECCCCccCCCh-----hhccCCcccEeecC-CcccCch--hhccCCC
Confidence 7777653211 111 566666666666666655432 35566666666664 3333322 2556666
Q ss_pred CCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccC
Q 046844 201 LSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSH 280 (967)
Q Consensus 201 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 280 (967)
|++|++++|.+.+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.. .+.+..+++|++|++++
T Consensus 179 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 179 LERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred CCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCC
Confidence 66666666655443 235556666666666666554433 4455556666655555432 12334445555555555
Q ss_pred CCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCCh
Q 046844 281 TGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISS 360 (967)
Q Consensus 281 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 360 (967)
|.+.+..+ +..+++|++|++++|.+++..+ +..++ +|++|++++|++.+..+
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----------------------~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT-----------------------ALTNLELNENQLEDISP- 304 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT-----------------------TCSEEECCSSCCSCCGG-
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC-----------------------ccCeEEcCCCcccCchh-
Confidence 55543322 4444555555555554443221 44444 45555555555443222
Q ss_pred hhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccC
Q 046844 361 TFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFEL 440 (967)
Q Consensus 361 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l 440 (967)
+..+++|++|++++|.+++..| +..+++|++|++++|++.+. + ....+++|+.|++++|++++..| +..+
T Consensus 305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l 374 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP---LANL 374 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG---GTTC
T ss_pred --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch---hhcC
Confidence 3445555555555555554433 44555555555555555543 1 12244555555555555554444 3667
Q ss_pred CCCCEEECCCCcccccc
Q 046844 441 RNLYTLDLSSNKFSRLK 457 (967)
Q Consensus 441 ~~L~~L~Ls~n~l~~l~ 457 (967)
++|+.|++++|+++.++
T Consensus 375 ~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 375 TRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TTCCEEECCCEEEECCC
T ss_pred CCCCEEeccCCcccCCc
Confidence 77777777777777544
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=327.11 Aligned_cols=345 Identities=18% Similarity=0.152 Sum_probs=260.9
Q ss_pred cEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCC--CCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCc
Q 046844 476 SVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQE--PYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN 553 (967)
Q Consensus 476 ~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~ 553 (967)
+.++.++++++ .+|..+. ++++.|++++|.++.++. ...+++|++|++++|.+++..|..+
T Consensus 14 ~~v~c~~~~l~-~ip~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~------------ 76 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP----TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF------------ 76 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT------------
T ss_pred CEEEeCCCCcC-cCCCCCC----CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh------------
Confidence 46777777776 4554332 356777777777666532 2336666666666666665544322
Q ss_pred CCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc
Q 046844 554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT 633 (967)
Q Consensus 554 l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ 633 (967)
..+..++. |++++|.+++..+..+.++++|++|++++|++++..|..+..+. +|+.|++++|.+++.
T Consensus 77 ---------~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 77 ---------NNLFNLRT--LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYI 143 (477)
T ss_dssp ---------TTCTTCCE--EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEEECCTTCCEE
T ss_pred ---------hCCccCCE--EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc--cCCEEECCCCcccee
Confidence 22233333 55555555544445566788889999999988877777776665 899999999998855
Q ss_pred CCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC
Q 046844 634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713 (967)
Q Consensus 634 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~ 713 (967)
.+.. |.++++|++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+.+ |...
T Consensus 144 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~ 220 (477)
T 2id5_A 144 SHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNC 220 (477)
T ss_dssp CTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE--CTTT
T ss_pred Chhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc--Cccc
Confidence 5555 888899999999999998877778889999999999999999888888888999999999998887777 7767
Q ss_pred CCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECC
Q 046844 714 VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFS 793 (967)
Q Consensus 714 ~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls 793 (967)
....+|+.|++++|++++ +|...+ ..++.|+.|||+
T Consensus 221 ~~~~~L~~L~l~~n~l~~-~~~~~~-------------------------------------------~~l~~L~~L~Ls 256 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTA-VPYLAV-------------------------------------------RHLVYLRFLNLS 256 (477)
T ss_dssp TTTCCCSEEEEESSCCCS-CCHHHH-------------------------------------------TTCTTCCEEECC
T ss_pred ccCccccEEECcCCcccc-cCHHHh-------------------------------------------cCccccCeeECC
Confidence 677789999999998874 342221 246789999999
Q ss_pred CCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCC
Q 046844 794 SNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKI 873 (967)
Q Consensus 794 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i 873 (967)
+|++++..+..|+.+++|+.|+|++|++++..|..|+++++|+.|||++|++++..+..+..++.|+.|++++|.+.+..
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 99999998889999999999999999999999999999999999999999999988888999999999999999998765
Q ss_pred CCCCcCCccCCCccCCCCCCCCCC
Q 046844 874 PTSTQLQSFSPTSYEGNKGLYGPP 897 (967)
Q Consensus 874 p~~~~~~~~~~~~~~gn~~lcg~~ 897 (967)
+....+.......+.++...|..|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 337 RLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GGHHHHTTTTSSCCTTCCCBEEES
T ss_pred chHhHHhhhhccccCccCceeCCc
Confidence 532111222234456666667543
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=317.86 Aligned_cols=321 Identities=19% Similarity=0.182 Sum_probs=268.9
Q ss_pred cEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCc
Q 046844 524 RFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNN 603 (967)
Q Consensus 524 ~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~ 603 (967)
+.++.+++.++..+...++.++.|++++|+++.++...+..+..++. |++++|.+++..|..+.++++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~--L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEE--LELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCE--EECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCE--EECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 34555555555444444456677777777777665554455666666 9999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccccc
Q 046844 604 LSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNF 683 (967)
Q Consensus 604 l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 683 (967)
+++..+..+..+. +|++|+|++|++.+..|.. |..+++|++|++++|.+++..|..|.++++|+.|++++|++++..
T Consensus 92 l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 92 LKLIPLGVFTGLS--NLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCSCCTTSSTTCT--TCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCccCcccccCCC--CCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 9854444566655 9999999999999766666 999999999999999999999999999999999999999999988
Q ss_pred chhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCc
Q 046844 684 PCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQ 763 (967)
Q Consensus 684 p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (967)
+..|.++++|+.|++++|.+.+.. +..+..+++|+.|++++|++.+.+|...+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------------- 221 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCL------------------------- 221 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTTT-------------------------
T ss_pred hhHhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccccccCcccc-------------------------
Confidence 889999999999999999999986 77899999999999999998877764321
Q ss_pred eeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCc
Q 046844 764 FYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMN 843 (967)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N 843 (967)
....|+.|++++|++++..+..++.+++|+.|+|++|.+++..+..|+++++|+.|+|++|
T Consensus 222 -------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 222 -------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp -------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred -------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 1236899999999999766678999999999999999999999999999999999999999
Q ss_pred cccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCccCCCCCCCC
Q 046844 844 NLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG 895 (967)
Q Consensus 844 ~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg 895 (967)
++++..|..+.+++.|+.|++++|++++..|.. ..+..+....+.+|+--|.
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999999999999999999855532 2233444556778886664
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=5.6e-31 Score=297.14 Aligned_cols=349 Identities=19% Similarity=0.138 Sum_probs=183.4
Q ss_pred cCCCCCCCCCCCcc-cceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCc-cccCCCCCC
Q 046844 18 LSQWSSHQSSDCCD-WSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPS-RLGNLTNLT 95 (967)
Q Consensus 18 l~~w~~~~~~~~c~-w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~-~l~~l~~L~ 95 (967)
+++| ..+.+||. |.++.|... .+.+......... ...-..++++++|+++++.+. .+|. .+..+++|+
T Consensus 3 ~~~~--~~~~~C~~~~~~~~c~~~----~~~i~~~~~~~~~--~~~~~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~ 72 (390)
T 3o6n_A 3 VKPR--QPEYKCIDSNLQYDCVFY----DVHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVE 72 (390)
T ss_dssp ------CCEECBCC------EEEE----SCEECSSCCCCEE--SCSSGGGCCCSEEEEESCEES--EECTHHHHHCCCCS
T ss_pred cCCC--CCccceehhhhhhcccee----eeeeecccccccc--cccccccCCceEEEecCCchh--hCChhHhcccccCc
Confidence 6789 66678876 444444211 1111111111111 222345788888888888877 4564 367788888
Q ss_pred EEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHhcCCC
Q 046844 96 YLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKALSFLP 175 (967)
Q Consensus 96 ~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~ 175 (967)
+|++++|.+.+..|..++++++|++|++++|
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n------------------------------------------------- 103 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN------------------------------------------------- 103 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSS-------------------------------------------------
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCC-------------------------------------------------
Confidence 8888888887555556666666666666653
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEecc
Q 046844 176 NLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLS 255 (967)
Q Consensus 176 ~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 255 (967)
.+++..+..+.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 104 ----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 104 ----------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp ----------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred ----------CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 2222233333444444444444444433333334445555555555555554444445555555555555
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccC
Q 046844 256 INQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPI 335 (967)
Q Consensus 256 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 335 (967)
+|.+.... +..+++|+.|++++|.+.+ +...++|++|++++|.+. ...
T Consensus 174 ~n~l~~~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~------------------------~~~ 221 (390)
T 3o6n_A 174 SNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN------------------------VVR 221 (390)
T ss_dssp SSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC------------------------EEE
T ss_pred CCcCCccc---cccccccceeecccccccc-----cCCCCcceEEECCCCeee------------------------ecc
Confidence 44432221 1123333444444333321 112233444444444433 221
Q ss_pred ccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCC
Q 046844 336 PSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSS 415 (967)
Q Consensus 336 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 415 (967)
. ....+|++|++++|.+++. .. +..+++|++|++++|.+++..|..+..+++|++|++++|++.+.... ...+
T Consensus 222 ~--~~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~l 294 (390)
T 3o6n_A 222 G--PVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPI 294 (390)
T ss_dssp C--CCCSSCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS--SSCC
T ss_pred c--cccccccEEECCCCCCccc--HH-HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc--cCCC
Confidence 1 1123555566666655532 12 56666677777777766666666666677777777777766643221 1345
Q ss_pred CcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCC
Q 046844 416 SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487 (967)
Q Consensus 416 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~ 487 (967)
++|+.|++++|.+. .+|..+ ..+++|+.|++++|+++.+. +..+++|++|++++|.+.+
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~N~i~~~~-----------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLK-----------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCC-----------CCTTCCCSEEECCSSCEEH
T ss_pred CCCCEEECCCCcce-ecCccc-cccCcCCEEECCCCccceeC-----------chhhccCCEEEcCCCCccc
Confidence 66666666666666 455554 66788888888888776442 4556677888888887764
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2e-30 Score=292.62 Aligned_cols=334 Identities=20% Similarity=0.205 Sum_probs=203.3
Q ss_pred CCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchh
Q 046844 415 SSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIW 494 (967)
Q Consensus 415 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~ 494 (967)
...++.+++++|.+. .+|..+|..+++|++|++++|+++.+... .+..+++|++|++++|++++..|..+.
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY--------AFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChh--------hccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 345666666666665 67777778889999999999888754321 177788888888888888876666554
Q ss_pred ccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeee
Q 046844 495 EVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFV 574 (967)
Q Consensus 495 ~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~ 574 (967)
.. ++|++|++++|.++.++. .++..++.++. |+
T Consensus 115 ~l--~~L~~L~L~~n~l~~l~~-------------------------------------------~~~~~l~~L~~--L~ 147 (390)
T 3o6n_A 115 NV--PLLTVLVLERNDLSSLPR-------------------------------------------GIFHNTPKLTT--LS 147 (390)
T ss_dssp TC--TTCCEEECCSSCCCCCCT-------------------------------------------TTTTTCTTCCE--EE
T ss_pred CC--CCCCEEECCCCccCcCCH-------------------------------------------HHhcCCCCCcE--EE
Confidence 32 234444444433333322 11111122222 33
Q ss_pred ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844 575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654 (967)
Q Consensus 575 l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 654 (967)
+++|.+.+..|..+..+++|++|++++|++++ ++ +.... +|+.|++++|.+++ + ....+|++|++++|+
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~--~L~~L~l~~n~l~~-~-----~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIP--SLFHANVSYNLLST-L-----AIPIAVEELDASHNS 216 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCT--TCSEEECCSSCCSE-E-----ECCSSCSEEECCSSC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--ccccc--ccceeecccccccc-c-----CCCCcceEEECCCCe
Confidence 34444444445556667777777777777764 22 22223 67777777777763 2 223467777777777
Q ss_pred cCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844 655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS 734 (967)
Q Consensus 655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p 734 (967)
++.. |.. ..++|+.|++++|++++. .++..+++|++|++++|++++.. |..+..+++|+.|++++|+++
T Consensus 217 l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~---- 285 (390)
T 3o6n_A 217 INVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNRLV---- 285 (390)
T ss_dssp CCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSCCC----
T ss_pred eeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCcCc----
Confidence 7644 222 235677777777777663 45667777777777777776665 555666666666666655543
Q ss_pred HHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEE
Q 046844 735 QKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL 814 (967)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L 814 (967)
+ +|..++.+++|++|
T Consensus 286 ----------------------------------------------------------------~-~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 286 ----------------------------------------------------------------A-LNLYGQPIPTLKVL 300 (390)
T ss_dssp ----------------------------------------------------------------E-EECSSSCCTTCCEE
T ss_pred ----------------------------------------------------------------c-cCcccCCCCCCCEE
Confidence 2 23444556677777
Q ss_pred ECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCC
Q 046844 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLY 894 (967)
Q Consensus 815 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc 894 (967)
+|++|+++ .+|..++.+++|+.|||++|++++. | +..++.|+.|++++|++++.-.. ..+..+....+.+++..|
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c 375 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHC 375 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCC
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCcee
Confidence 77777777 4666677777777777777777654 2 56677777777777777664221 123344445566676667
Q ss_pred CC
Q 046844 895 GP 896 (967)
Q Consensus 895 g~ 896 (967)
..
T Consensus 376 ~~ 377 (390)
T 3o6n_A 376 KI 377 (390)
T ss_dssp CT
T ss_pred cc
Confidence 64
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-30 Score=310.03 Aligned_cols=334 Identities=19% Similarity=0.191 Sum_probs=204.0
Q ss_pred CcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhc
Q 046844 416 SVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWE 495 (967)
Q Consensus 416 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~ 495 (967)
..++.+++++|.+. .+|..+|..+++|+.|++++|.++.+... .+..+++|++|++++|.+++..|..+..
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTY--------AFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTT--------TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChH--------HhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 44555666666655 57777778888888888888887744321 2677788888888888887766655443
Q ss_pred cCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeee
Q 046844 496 VGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVA 575 (967)
Q Consensus 496 ~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l 575 (967)
. ++|++|++++|.+++.++ .++..++.++. |++
T Consensus 122 l------------------------~~L~~L~L~~n~l~~l~~---------------------~~~~~l~~L~~--L~L 154 (597)
T 3oja_B 122 V------------------------PLLTVLVLERNDLSSLPR---------------------GIFHNTPKLTT--LSM 154 (597)
T ss_dssp C------------------------TTCCEEECCSSCCCCCCT---------------------TTTTTCTTCCE--EEC
T ss_pred C------------------------CCCCEEEeeCCCCCCCCH---------------------HHhccCCCCCE--EEe
Confidence 2 234444444444332222 11111222222 444
Q ss_pred cCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCcc
Q 046844 576 ANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQL 655 (967)
Q Consensus 576 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 655 (967)
++|.+++..|..+..+++|++|++++|.+++. + +.... +|+.|++++|.+++ +....+|+.|++++|.+
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~--~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIP--SLFHANVSYNLLST------LAIPIAVEELDASHNSI 223 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCT--TCSEEECCSSCCSE------EECCTTCSEEECCSSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhh--hhhhhhcccCcccc------ccCCchhheeeccCCcc
Confidence 44444444555566666677777777766642 2 12222 66666666666653 22234566666666666
Q ss_pred CCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcH
Q 046844 656 QGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ 735 (967)
Q Consensus 656 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~ 735 (967)
+...+.. .++|+.|++++|.+++ +.++..+++|+.|+|++|.+++.. |..+..+++|+.|+|+
T Consensus 224 ~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls---------- 286 (597)
T 3oja_B 224 NVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYIS---------- 286 (597)
T ss_dssp CEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECT----------
T ss_pred ccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECC----------
Confidence 5332221 2456666666666665 245566666666666666666554 5555555555544444
Q ss_pred HHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEE
Q 046844 736 KWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALN 815 (967)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~ 815 (967)
+|++++ +|..++.+++|+.|+
T Consensus 287 ----------------------------------------------------------~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 287 ----------------------------------------------------------NNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp ----------------------------------------------------------TSCCCE-EECSSSCCTTCCEEE
T ss_pred ----------------------------------------------------------CCCCCC-CCcccccCCCCcEEE
Confidence 444443 355566677888888
Q ss_pred CCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCCccCCCccCCCCCCCC
Q 046844 816 MSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEGNKGLYG 895 (967)
Q Consensus 816 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg 895 (967)
|++|.++ .+|..++.+++|+.|||++|.+++.. +..++.|+.|++++|+++|..+. ..+..+....+.+++..|+
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~ 382 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 382 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCC
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCC
Confidence 8888888 57777888888888888888887652 66778888888888888876432 2345566667788888998
Q ss_pred CC
Q 046844 896 PP 897 (967)
Q Consensus 896 ~~ 897 (967)
.+
T Consensus 383 ~~ 384 (597)
T 3oja_B 383 ID 384 (597)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.4e-30 Score=286.01 Aligned_cols=306 Identities=21% Similarity=0.296 Sum_probs=201.4
Q ss_pred ccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCC
Q 046844 438 FELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEP 517 (967)
Q Consensus 438 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~ 517 (967)
..+++|++|++++|.+..+ +.+..+++|++|++++|++++..+ +. ..++|++|++++|.++.++..
T Consensus 41 ~~l~~L~~L~l~~~~i~~~----------~~~~~~~~L~~L~l~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI----------QGIEYLTNLEYLNLNGNQITDISP--LS--NLVKLTNLYIGTNKITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC----------TTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGGG
T ss_pred hhcccccEEEEeCCccccc----------hhhhhcCCccEEEccCCccccchh--hh--cCCcCCEEEccCCcccCchHH
Confidence 3455666666666655422 224555566666666666653322 22 223455555555555554433
Q ss_pred CCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEE
Q 046844 518 YSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVL 597 (967)
Q Consensus 518 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L 597 (967)
..+++|++|++++|++++ ++. +..+++|+.|
T Consensus 107 ~~l~~L~~L~l~~n~i~~---------------------~~~----------------------------~~~l~~L~~L 137 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISD---------------------ISP----------------------------LANLTKMYSL 137 (347)
T ss_dssp TTCTTCSEEECTTSCCCC---------------------CGG----------------------------GTTCTTCCEE
T ss_pred cCCCcCCEEECcCCcccC---------------------chh----------------------------hccCCceeEE
Confidence 344555555555554432 111 3445667777
Q ss_pred EcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCC
Q 046844 598 DLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSN 677 (967)
Q Consensus 598 ~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 677 (967)
++++|.....++. +.... +|++|++++|.+.+ ++. +..+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 138 ~l~~n~~~~~~~~-~~~l~--~L~~L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 138 NLGANHNLSDLSP-LSNMT--GLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209 (347)
T ss_dssp ECTTCTTCCCCGG-GTTCT--TCCEEECCSSCCCC-CGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred ECCCCCCcccccc-hhhCC--CCcEEEecCCCcCC-chh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccC
Confidence 7777754433333 44443 67777777777663 322 5566777777777777775433 677778888888888
Q ss_pred ccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccc
Q 046844 678 YISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGI 757 (967)
Q Consensus 678 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 757 (967)
.+++..+ +..+++|++|++++|++++.. + +..+++|+.|++++|++++. +.
T Consensus 210 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~~-~~---------------------- 260 (347)
T 4fmz_A 210 QITDITP--VANMTRLNSLKIGNNKITDLS--P--LANLSQLTWLEIGTNQISDI-NA---------------------- 260 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCC-GG----------------------
T ss_pred CCCCCch--hhcCCcCCEEEccCCccCCCc--c--hhcCCCCCEEECCCCccCCC-hh----------------------
Confidence 7777555 677778888888888777653 2 67777888888888877642 20
Q ss_pred cCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCe
Q 046844 758 EMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIES 837 (967)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~ 837 (967)
...++.|+.|++++|++++. +.++.+++|+.|+|++|++++..|..++.+++|+.
T Consensus 261 -----------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 261 -----------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp -----------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred -----------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 11456788888888888864 35888999999999999999999999999999999
Q ss_pred EeCcCccccccCCccccCCCCCCeEEccCCccc
Q 046844 838 LDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 870 (967)
Q Consensus 838 LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 870 (967)
|++++|.+++..| ++.++.|++|++++|.++
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999998777 888999999999999874
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.8e-29 Score=278.65 Aligned_cols=306 Identities=24% Similarity=0.306 Sum_probs=166.4
Q ss_pred CcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHH
Q 046844 63 LFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSL 142 (967)
Q Consensus 63 l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~ 142 (967)
+..+++|++|+++++.+. .+| .+..+++|++|++++|.+. .+|. +.++++|++|++++|.... ++
T Consensus 40 ~~~l~~L~~L~l~~~~i~--~~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~---------~~- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA--SIQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD---------IS- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCC--CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC---------CG-
T ss_pred chhcccccEEEEeCCccc--cch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC---------ch-
Confidence 345666677777766665 234 3666677777777776666 3444 6666666666666642211 11
Q ss_pred HhcCCCCCCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCC
Q 046844 143 FLQNLTELTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHL 222 (967)
Q Consensus 143 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l 222 (967)
.+.++++|++|+++++.+...+ .+..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l 176 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDIS-----PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANL 176 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCG-----GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred HHcCCCcCCEEECcCCcccCch-----hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccC
Confidence 2455555666666555554432 15556666666666664443332 25566666666666666554433 5566
Q ss_pred CCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEc
Q 046844 223 TNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEV 302 (967)
Q Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 302 (967)
++|++|++++|.+.+..+ +..+++|+.|++++|.+.... .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 666666666666653322 555666666666666543322 14445556666666665553322 555666666666
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCC
Q 046844 303 SSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGS 382 (967)
Q Consensus 303 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 382 (967)
++|.+++. ..+..+++|++|++++|.+.+. +.+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCC
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccc
Confidence 66655532 3455555666666665555542 33333445555555555555433333 45555555555555555544
Q ss_pred cChhccCCCCCCEEeCcCCcC
Q 046844 383 IPRSLFLLPNLEMLQLSNNQF 403 (967)
Q Consensus 383 ~~~~l~~l~~L~~L~L~~n~l 403 (967)
.| +..+++|++|++++|.+
T Consensus 327 ~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 327 RP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GG--GGGCTTCSEESSSCC--
T ss_pred cC--hhhhhccceeehhhhcc
Confidence 33 44555555555555554
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.8e-30 Score=302.86 Aligned_cols=347 Identities=20% Similarity=0.170 Sum_probs=195.0
Q ss_pred CcCCCCCCCCCCCcc----cceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCc-cccCC
Q 046844 17 KLSQWSSHQSSDCCD----WSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPS-RLGNL 91 (967)
Q Consensus 17 ~l~~w~~~~~~~~c~----w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~-~l~~l 91 (967)
.+++| ..+.+||. |.++.|+. ++ +........ ...-..+.+++.|+++++.+. .+|. .+..+
T Consensus 8 ~l~~~--~~~~~C~~~~~~~~c~~~~~--~i---~~~~~~~~~----~~~~l~l~~l~~l~l~~~~l~--~lp~~~~~~l 74 (597)
T 3oja_B 8 NVKPR--QPEYKCIDSNLQYDCVFYDV--HI---DMQTQDVYF----GFEDITLNNQKIVTFKNSTMR--KLPAALLDSF 74 (597)
T ss_dssp ---CC--CSEECCCCC--CCSEEECSC--EE---CSSCCCCEE----SCSSGGGCCCSEEEESSCEES--EECTHHHHHC
T ss_pred cccCC--CCCCcCcccCcCceeEecCc--ee---ccccccccc----CcccccCCCceEEEeeCCCCC--CcCHHHHccC
Confidence 57899 66778885 77776652 11 111111111 112235678888888888877 3554 46778
Q ss_pred CCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHh
Q 046844 92 TNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKAL 171 (967)
Q Consensus 92 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l 171 (967)
++|++|+|++|.+.+..|..++.+++|++|++++|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--------------------------------------------- 109 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--------------------------------------------- 109 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS---------------------------------------------
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC---------------------------------------------
Confidence 88888888888888666666777777777777654
Q ss_pred cCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCCCE
Q 046844 172 SFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTLET 251 (967)
Q Consensus 172 ~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (967)
.+++..+..++.+++|++|+|++|.+.+..+..|+++++|++|++++|.+++..|..|..+++|++
T Consensus 110 --------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 110 --------------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp --------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred --------------cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 223333333444444444444444444333333445555555555555555444445555555555
Q ss_pred EeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCccc
Q 046844 252 LDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHF 331 (967)
Q Consensus 252 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 331 (967)
|++++|.+.... +..+++|+.|++++|.+.+ +...++|++|++++|.+.
T Consensus 176 L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~----------------------- 224 (597)
T 3oja_B 176 LQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN----------------------- 224 (597)
T ss_dssp EECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-----------------------
T ss_pred EECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-----------------------
Confidence 555555432221 1123333444444333321 122233444444444433
Q ss_pred cccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcccccccc
Q 046844 332 FGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEIS 411 (967)
Q Consensus 332 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 411 (967)
...+.. ..+|+.|++++|.+++. .. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+....
T Consensus 225 -~~~~~~--~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-- 296 (597)
T 3oja_B 225 -VVRGPV--NVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-- 296 (597)
T ss_dssp -EEECSC--CSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS--
T ss_pred -cccccc--CCCCCEEECCCCCCCCC--hh-hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc--
Confidence 221111 13566666666666542 22 56677777777777777766677777777777777777777653221
Q ss_pred ccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCC
Q 046844 412 NVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISG 487 (967)
Q Consensus 412 ~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~ 487 (967)
...+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.++.+. +..+++|+.|++++|.+.+
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~~N~l~~~~-----------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLK-----------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCC-----------CCTTCCCSEEECCSSCEEH
T ss_pred cccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECCCCCCCCcC-----------hhhcCCCCEEEeeCCCCCC
Confidence 134566777777777766 566655 77788888888888876442 4556778888888887764
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.9e-29 Score=276.30 Aligned_cols=287 Identities=18% Similarity=0.259 Sum_probs=171.9
Q ss_pred CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844 522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601 (967)
Q Consensus 522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~ 601 (967)
.++.++++++.++..+....+++++|++++|.++.+++.....+..++. |++++|.+++..|..+..+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYA--LVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCE--EECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcE--EECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3455555555554333333345555555555555544433333444444 66666666666666666677777777777
Q ss_pred CcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccC--CCCcccccCCCCCCEEECCCCcc
Q 046844 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQ--GVVPKSLANCNMLQVLDLRSNYI 679 (967)
Q Consensus 602 N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l 679 (967)
|+++ .+|..+. . +|++|++++|+++ .+|...|..+++|++|++++|.++ +..|..|..+ +|+.|++++|++
T Consensus 112 n~l~-~l~~~~~--~--~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 112 NHLV-EIPPNLP--S--SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp SCCC-SCCSSCC--T--TCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CcCC-ccCcccc--c--cCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 7766 5555443 2 6777777777776 444444666677777777777764 3556666666 677777777776
Q ss_pred ccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccC
Q 046844 680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM 759 (967)
Q Consensus 680 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (967)
++ +|..+. ++|++|++++|++++.. +..+..+++|+.|++++|++++..|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~---------------------- 237 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSL---------------------- 237 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGG----------------------
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHh----------------------
Confidence 66 333332 56677777777776654 5566666777777777776665443211
Q ss_pred CCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC------C
Q 046844 760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL------K 833 (967)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l------~ 833 (967)
..++.|+.|++++|+++ .+|..++.+++|+.|+|++|++++..+..|..+ .
T Consensus 238 ----------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 238 ----------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp ----------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred ----------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 13455666677777666 566666666777777777777766555555543 4
Q ss_pred CCCeEeCcCcccc--ccCCccccCCCCCCeEEccCC
Q 046844 834 EIESLDLSMNNLS--GKIPAQLASLNFLSVLNLSYN 867 (967)
Q Consensus 834 ~L~~LdLs~N~l~--g~ip~~l~~l~~L~~l~ls~N 867 (967)
.|+.|++++|.+. +..|..+..++.|+.+++++|
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 5666777777665 455566666666776766665
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8.6e-29 Score=272.37 Aligned_cols=230 Identities=21% Similarity=0.228 Sum_probs=127.7
Q ss_pred ChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCccccc
Q 046844 585 PESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLA 664 (967)
Q Consensus 585 p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 664 (967)
+..+.++++|++|++++|++++..|..+..+. +|++|++++|+++ .+|...+ ++|++|++++|++++..+..|.
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~ 142 (330)
T 1xku_A 69 DGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFN 142 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHT
T ss_pred hhhhccCCCCCEEECCCCcCCeeCHHHhcCCC--CCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhc
Confidence 33444555566666666665544455554443 5666666666655 4554422 4566666666666655555556
Q ss_pred CCCCCCEEECCCCcccc--ccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844 665 NCNMLQVLDLRSNYISD--NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742 (967)
Q Consensus 665 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~ 742 (967)
++++|++|++++|+++. ..+..+.++++|++|++++|++++. |..+. ++|+.|++++|++++..|..+
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---~~~~~--~~L~~L~l~~n~l~~~~~~~~----- 212 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLP--PSLTELHLDGNKITKVDAASL----- 212 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC---CSSCC--TTCSEEECTTSCCCEECTGGG-----
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC---Ccccc--ccCCEEECCCCcCCccCHHHh-----
Confidence 66666666666666542 4455555666666666666665542 33332 556666666666554433211
Q ss_pred hcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCc
Q 046844 743 VAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALT 822 (967)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 822 (967)
..++.|+.|++++|++++..|..++.+++|+.|+|++|+++
T Consensus 213 ---------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 213 ---------------------------------------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ---------------------------------------cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 12445556666666666555555666666666666666666
Q ss_pred ccCCccccCCCCCCeEeCcCccccccCCccccCC------CCCCeEEccCCccc
Q 046844 823 GSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL------NFLSVLNLSYNNLV 870 (967)
Q Consensus 823 g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l------~~L~~l~ls~N~l~ 870 (967)
.+|..++.+++|+.||+++|++++..+..+... +.|+.+++++|.+.
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 556566666666666666666665555444332 45556666666553
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4.8e-28 Score=266.39 Aligned_cols=289 Identities=17% Similarity=0.234 Sum_probs=223.9
Q ss_pred CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844 522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601 (967)
Q Consensus 522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~ 601 (967)
.++.++++++.++..+....+.+++|++++|+++.++......+..++. |++++|.+++..|..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT--LILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCE--EECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCE--EECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 6888999988888665555678888888888888887755555666666 88888888888888888888888999988
Q ss_pred CcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCC--CCcccccCCCCCCEEECCCCcc
Q 046844 602 NNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQG--VVPKSLANCNMLQVLDLRSNYI 679 (967)
Q Consensus 602 N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l 679 (967)
|+++ .+|..+. . +|++|++++|.+++ ++...|..+++|++|++++|.++. ..+..|..+++|++|++++|++
T Consensus 110 n~l~-~l~~~~~--~--~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 110 NQLK-ELPEKMP--K--TLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp SCCS-BCCSSCC--T--TCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CcCC-ccChhhc--c--cccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 8887 6676553 2 88888898888884 444447888888889998888863 6777888888889999988888
Q ss_pred ccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccC
Q 046844 680 SDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEM 759 (967)
Q Consensus 680 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (967)
+. +|..+. ++|++|++++|++++.. |..+..+++|+.|++++|++++..+..+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------------------- 236 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL---------------------- 236 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG----------------------
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhc----------------------
Confidence 86 444332 78888889888888876 7788888888889998888876544211
Q ss_pred CCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC------C
Q 046844 760 PSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL------K 833 (967)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l------~ 833 (967)
..++.|+.|++++|+++ .+|..++.++.|++|+|++|++++..+..|... .
T Consensus 237 ----------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 237 ----------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp ----------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred ----------------------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 13567888888888888 778888888888889999888887777776543 6
Q ss_pred CCCeEeCcCccccc--cCCccccCCCCCCeEEccCCc
Q 046844 834 EIESLDLSMNNLSG--KIPAQLASLNFLSVLNLSYNN 868 (967)
Q Consensus 834 ~L~~LdLs~N~l~g--~ip~~l~~l~~L~~l~ls~N~ 868 (967)
.++.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccceEeecCcccccccCccccccccceeEEEecccC
Confidence 78888888888863 556778888888888888874
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.7e-28 Score=268.51 Aligned_cols=267 Identities=16% Similarity=0.229 Sum_probs=219.8
Q ss_pred CCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCcc
Q 046844 542 PNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLE 621 (967)
Q Consensus 542 ~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~ 621 (967)
..++.++++++.++.+|..+. +.++. |++++|.+.+..|..+.++++|++|++++|++++..|..+..+. +|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~---~~l~~--L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS---PDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR--KLQ 105 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC---TTCCE--EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT--TCC
T ss_pred ccCCEEECCCCCccccCCCCC---CCCeE--EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC--CCC
Confidence 368899999999999998664 34555 89999999988888899999999999999999877777777766 899
Q ss_pred EEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccc--ccchhhhcCCCCCEEEcc
Q 046844 622 VLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD--NFPCWLRNASSLQVLVLR 699 (967)
Q Consensus 622 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~ 699 (967)
+|++++|+++ .+|...+ ++|++|++++|++++..+..|..+++|+.|++++|+++. ..|..+..+ +|+.|+++
T Consensus 106 ~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 9999999998 7887644 689999999999998777788999999999999999863 677778777 89999999
Q ss_pred CCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceee
Q 046844 700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIK 779 (967)
Q Consensus 700 ~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (967)
+|++++. |..+. ++|+.|++++|++++..|..+
T Consensus 181 ~n~l~~l---~~~~~--~~L~~L~l~~n~i~~~~~~~l------------------------------------------ 213 (332)
T 2ft3_A 181 EAKLTGI---PKDLP--ETLNELHLDHNKIQAIELEDL------------------------------------------ 213 (332)
T ss_dssp SSBCSSC---CSSSC--SSCSCCBCCSSCCCCCCTTSS------------------------------------------
T ss_pred CCCCCcc---Ccccc--CCCCEEECCCCcCCccCHHHh------------------------------------------
Confidence 9998874 55443 788899999998876554221
Q ss_pred ecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCC---
Q 046844 780 LLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL--- 856 (967)
Q Consensus 780 ~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l--- 856 (967)
..++.|+.|++++|++++..|..++.+++|+.|+|++|+++ .+|..++.+++|+.||+++|++++..+..+...
T Consensus 214 --~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 290 (332)
T 2ft3_A 214 --LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290 (332)
T ss_dssp --TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred --cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence 14567888899999998888888888999999999999988 788888889999999999999988777777653
Q ss_pred ---CCCCeEEccCCccc
Q 046844 857 ---NFLSVLNLSYNNLV 870 (967)
Q Consensus 857 ---~~L~~l~ls~N~l~ 870 (967)
..|+.+++++|.+.
T Consensus 291 ~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSSCCBSEEECCSSSSC
T ss_pred cccccccceEeecCccc
Confidence 56888899988876
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.6e-31 Score=307.42 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=45.0
Q ss_pred cccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCC----CcChhccCCCCCCEEeCcCCcCcc
Q 046844 343 NLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSG----SIPRSLFLLPNLEMLQLSNNQFEN 405 (967)
Q Consensus 343 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~ 405 (967)
+|++|++++|+++.......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 567777777777644434446778888888888888774 245567777888888888887764
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.1e-30 Score=299.80 Aligned_cols=357 Identities=24% Similarity=0.228 Sum_probs=222.2
Q ss_pred cEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCC---CCCccccCCCCCCEEeCCCCCCCccCChhcc-CCC-
Q 046844 42 HVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGF---QIPSRLGNLTNLTYLNLSQGGFAGEIPTEIS-SLT- 116 (967)
Q Consensus 42 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~~~~~~~lp~~l~-~l~- 116 (967)
++++|+|+++.+.... ....+..+++|++|+|++|.+.+. .++..+..+++|++|+|++|.+.+..+..+. .++
T Consensus 4 ~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 6788899888876432 012256788899999998888743 2566778888999999999888765554443 355
Q ss_pred ---CCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhH-HHHh-cCCCCccEEEccCCCCCCCC
Q 046844 117 ---RLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEW-CKAL-SFLPNLQVLSLSGCDLSGPI 191 (967)
Q Consensus 117 ---~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~l-~~l~~L~~L~Ls~~~l~~~~ 191 (967)
+|++|++++|.... .....++..+.++++|++|++++|.+...+... ...+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTG----AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCCCCEEECTTSCCBG----GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCCceeEEEccCCCCCH----HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 68999998864322 222456777888888999999888876543322 2222 33678888888888887643
Q ss_pred ----cccccCCCCCCEEEccCCCCCCcchhhhc-----CCCCCCEEeccCCCCCCc----cchhccCCCCCCEEeccCCC
Q 046844 192 ----NHYLAKSRSLSVIRLHYNYGLSSGTEFLA-----HLTNLKALDLSECGLQGK----FPEKILHVPTLETLDLSINQ 258 (967)
Q Consensus 192 ----~~~l~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 258 (967)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 45566778888888888887665554443 356888888888888764 46667777888888888887
Q ss_pred CCCCCCC-----CCCCCCCCCEEEccCCCCCCC----ccccccCCCCCCEEEccCCCCCCCCCcccc-----CCCCCcEE
Q 046844 259 LLQGSLP-----NFPKNSSLRDLILSHTGLSGT----LPDSIGNLENLTRVEVSSCNFTGPIPPSMA-----NLTQLFHM 324 (967)
Q Consensus 259 ~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L 324 (967)
+...... .+..+++|++|++++|.++.. ++..+..+++|++|++++|.+++..+..+. ..++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 5443211 122356677777777766643 455555667777777777766532222222 12466666
Q ss_pred EccCccccccC----cc-ccccCcccEEECCCCCCCCCCChhhhhc-----ccCccEEEcCCCcCCC----CcChhccCC
Q 046844 325 DFSSNHFFGPI----PS-LHKSRNLNNLDLSFNNLSGGISSTFWEQ-----LLNLQIVVLGHNSLSG----SIPRSLFLL 390 (967)
Q Consensus 325 ~L~~n~l~~~~----~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~l~~l 390 (967)
++++|.+++.. +. +..+++|++|++++|.+.+..+.. +.. .++|++|++++|.+++ .++..+..+
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE-LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH-HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 66666655431 11 112345555555555554332222 111 3455555555555553 344445555
Q ss_pred CCCCEEeCcCCcCc
Q 046844 391 PNLEMLQLSNNQFE 404 (967)
Q Consensus 391 ~~L~~L~L~~n~l~ 404 (967)
++|++|++++|++.
T Consensus 398 ~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 398 HSLRELDLSNNCLG 411 (461)
T ss_dssp CCCCEEECCSSSCC
T ss_pred CCccEEECCCCCCC
Confidence 55555555555544
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.2e-30 Score=312.00 Aligned_cols=437 Identities=14% Similarity=0.079 Sum_probs=220.0
Q ss_pred CCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCC---CCCCCcccc------------CCC
Q 046844 28 DCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFK---GFQIPSRLG------------NLT 92 (967)
Q Consensus 28 ~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~---~~~lp~~l~------------~l~ 92 (967)
-|++|.++.+....++ .+... ..... +..+.++++|++|+|+++... + .+|..++ .++
T Consensus 40 vck~W~~~~~~~~~~l---~~~~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 40 VCRRWFKIDSETREHV---TMALC-YTATP--DRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp SCHHHHHHHHHHCCEE---EESCG-GGSCH--HHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCT
T ss_pred HhHHHHHhhhccccEE---EEeec-cccCh--HHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCC
Confidence 4568999865322222 22221 11111 234568899999999875321 1 1332222 788
Q ss_pred CCCEEeCCCCCCCccCChhccC-CC-CCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHH
Q 046844 93 NLTYLNLSQGGFAGEIPTEISS-LT-RLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKA 170 (967)
Q Consensus 93 ~L~~L~Ls~~~~~~~lp~~l~~-l~-~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 170 (967)
+|++|+|++|.+.+..+..++. ++ +|++|++++|..+. ...++....++++|++|++++|.+.+.+..|...
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~------~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT------TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE------HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC------HHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 9999999998888776766766 34 49999998874322 2345555667888888888888776665554433
Q ss_pred -hcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCC---Cccchh
Q 046844 171 -LSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ---GKFPEK 242 (967)
Q Consensus 171 -l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~ 242 (967)
...+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 35677888888887777632 23334456666666666665544 4455566666666666543221 122233
Q ss_pred ccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCC-ccccCCCCC
Q 046844 243 ILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIP-PSMANLTQL 321 (967)
Q Consensus 243 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L 321 (967)
+..+++|+.|+++++ .. ..+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus 266 l~~~~~L~~L~l~~~------------------------~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM------------------------GP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CCCCTTCCEEEETTC------------------------CT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhccccccccCcccc------------------------ch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 444455555554443 21 2344444445555555555554332211 123445555
Q ss_pred cEEEccCccccccCccc-cccCcccEEECCC-----------CCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccC
Q 046844 322 FHMDFSSNHFFGPIPSL-HKSRNLNNLDLSF-----------NNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFL 389 (967)
Q Consensus 322 ~~L~L~~n~l~~~~~~~-~~~~~L~~L~L~~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 389 (967)
++|+++++...+.++.. ..+++|++|++++ +.+++.........+++|++|+++.+.+++..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 55555422111111211 1223455555552 23332211121234555555555555555444444433
Q ss_pred -CCCCCEEeCc----CCcCccc-----cccccccCCCcccEEEeeCCc--CCCCCChhhhccCCCCCEEECCCCcccccc
Q 046844 390 -LPNLEMLQLS----NNQFENQ-----LPEISNVSSSVLFDLDLSGNR--LEGPVPISIFFELRNLYTLDLSSNKFSRLK 457 (967)
Q Consensus 390 -l~~L~~L~L~----~n~l~~~-----~~~~~~~~~~~L~~L~l~~n~--l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~ 457 (967)
+++|+.|+++ .|.+++. ++.. ...+++|+.|+++.|. +++.....+...+++|++|++++|+++..
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~- 478 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE- 478 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-
Confidence 5555555553 3334332 1110 1124555555554332 33333333333455566666655555421
Q ss_pred cCCCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccC
Q 046844 458 LASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVS 513 (967)
Q Consensus 458 ~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 513 (967)
.++. +..+++|++|++++|.+++.....+.. ..++|++|++++|+++.
T Consensus 479 -------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 479 -------GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT-KLPSLRYLWVQGYRASM 527 (592)
T ss_dssp -------HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH-HCSSCCEEEEESCBCCT
T ss_pred -------HHHHHHhcCcccCeeeccCCCCcHHHHHHHHH-hcCccCeeECcCCcCCH
Confidence 1112 344555666666666554332222211 12456666666665544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.9e-28 Score=267.72 Aligned_cols=274 Identities=17% Similarity=0.219 Sum_probs=213.5
Q ss_pred eeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECC
Q 046844 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626 (967)
Q Consensus 547 L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls 626 (967)
.+++++.++.+|..+. +.++. |++++|.+++..+..+.++++|++|++++|++++..|..+.... +|++|+++
T Consensus 36 c~~~~~~l~~iP~~~~---~~L~~--L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls 108 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT---EAVKS--LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLS 108 (353)
T ss_dssp EECCSTTCSSCCTTCC---TTCCE--EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECC
T ss_pred eeCCCCCccccccccc---ccCcE--EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC--CCCEEECC
Confidence 4444555555554332 22333 66666666665556777888899999999988876676676665 89999999
Q ss_pred CCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccCCCCCCEEECCCC-ccccccchhhhcCCCCCEEEccCCccc
Q 046844 627 RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLANCNMLQVLDLRSN-YISDNFPCWLRNASSLQVLVLRSNNFS 704 (967)
Q Consensus 627 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~ 704 (967)
+|+++ .+|...|..+++|++|++++|++++..+ ..|..+++|++|++++| .+++..|..|.++++|++|++++|+++
T Consensus 109 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 99988 5665557888899999999999986554 57888999999999998 577777788899999999999999999
Q ss_pred eecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccC
Q 046844 705 GHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP 784 (967)
Q Consensus 705 ~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (967)
+.. |..+..+++|+.|++++|++. .+|..++ ..+
T Consensus 188 ~~~--~~~l~~l~~L~~L~l~~n~l~-~~~~~~~-------------------------------------------~~~ 221 (353)
T 2z80_A 188 SYE--PKSLKSIQNVSHLILHMKQHI-LLLEIFV-------------------------------------------DVT 221 (353)
T ss_dssp EEC--TTTTTTCSEEEEEEEECSCST-THHHHHH-------------------------------------------HHT
T ss_pred ccC--HHHHhccccCCeecCCCCccc-cchhhhh-------------------------------------------hhc
Confidence 887 888999999999999999984 4443322 135
Q ss_pred CcceEEECCCCcccCCCccccc---CCCCCcEEECCCCCCcc----cCCccccCCCCCCeEeCcCccccccCCcc-ccCC
Q 046844 785 NIFTSIDFSSNNFEGPIPVEMG---RFRSLYALNMSHNALTG----SIPSSFGNLKEIESLDLSMNNLSGKIPAQ-LASL 856 (967)
Q Consensus 785 ~~l~~l~Ls~N~l~g~ip~~~~---~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l 856 (967)
+.|+.|++++|++++..+..+. ....++.++|++|.+++ .+|..++++++|+.|||++|+++ .+|.. +.++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence 6789999999999987665543 35678899999999987 58888999999999999999999 56655 5899
Q ss_pred CCCCeEEccCCccccCCCC
Q 046844 857 NFLSVLNLSYNNLVGKIPT 875 (967)
Q Consensus 857 ~~L~~l~ls~N~l~g~ip~ 875 (967)
+.|++|++++|+++|..|.
T Consensus 301 ~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TTCCEEECCSSCBCCCHHH
T ss_pred CCCCEEEeeCCCccCcCCC
Confidence 9999999999999998873
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2e-27 Score=260.14 Aligned_cols=225 Identities=21% Similarity=0.236 Sum_probs=195.9
Q ss_pred CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCC
Q 046844 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ 670 (967)
Q Consensus 591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 670 (967)
.+.++.|++++|.++ .+|..+..+. +|++|+|++|.++ .+|.. |..+++|++|+|++|+++ .+|..+..+++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~--~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLS--HLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGT--TCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCch-hcChhhhhCC--CCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 467889999999988 7888877765 8999999999998 88877 788889999999999998 6788899999999
Q ss_pred EEECCCCccccccchhhhc---------CCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHH
Q 046844 671 VLDLRSNYISDNFPCWLRN---------ASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTM 741 (967)
Q Consensus 671 ~L~Ls~N~l~~~~p~~l~~---------l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~ 741 (967)
+|++++|.+.+.+|..+.. +++|++|+|++|+++ .+ |..+..+++|+.|++++|++++ +|..+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~N~l~~-l~~~l---- 225 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL--PASIANLQNLKSLKIRNSPLSA-LGPAI---- 225 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC--CGGGGGCTTCCEEEEESSCCCC-CCGGG----
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc--hHhhcCCCCCCEEEccCCCCCc-Cchhh----
Confidence 9999998888888877654 899999999999988 33 8888899999999999999885 33221
Q ss_pred hhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCC
Q 046844 742 MVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNAL 821 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l 821 (967)
..++.|+.|++++|++.+.+|..++.+++|+.|+|++|++
T Consensus 226 ----------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 226 ----------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp ----------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred ----------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 1467789999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcc
Q 046844 822 TGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 869 (967)
Q Consensus 822 ~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l 869 (967)
.+.+|..++++++|+.|||++|++.|.+|..+.+++.|+.++++.|.+
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999999999999999999999999999999999999987655
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=260.31 Aligned_cols=212 Identities=26% Similarity=0.310 Sum_probs=115.2
Q ss_pred hhcCCCCcEEEcccCcCCC--CCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-cccc
Q 046844 588 VCKATNFQVLDLSNNNLSG--TIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLA 664 (967)
Q Consensus 588 ~~~~~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~ 664 (967)
+.++++|++|++++|+++. ..|..+.... +|++|++++|.+. .+|.. |..+++|++|++++|++++..+ ..+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT--SLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 123 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCS--CCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred hhccccCCEEECCCCccCcccCccccccccc--ccCEEECCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhh
Confidence 4455555556665555542 1123333322 5555555555554 34433 4445555555555555554333 3444
Q ss_pred CCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce-ecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844 665 NCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG-HISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV 743 (967)
Q Consensus 665 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 743 (967)
.+++|++|++++|++++..|..+.++++|++|++++|.+++ .+ |..+..++
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~-------------------------- 175 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELR-------------------------- 175 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCT--------------------------
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc--hhHHhhCc--------------------------
Confidence 55555555555555555444445555555555555555443 22 33344444
Q ss_pred cccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcc
Q 046844 744 AETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTG 823 (967)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g 823 (967)
.|+.|++++|++++..|..|+.+++|+.|+|++|++++
T Consensus 176 ------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 176 ------------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp ------------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred ------------------------------------------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 45555555555555555666666666666666666666
Q ss_pred cCCccccCCCCCCeEeCcCccccccCCccccCCC-CCCeEEccCCccccCC
Q 046844 824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN-FLSVLNLSYNNLVGKI 873 (967)
Q Consensus 824 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~i 873 (967)
..+..++.+++|+.|||++|++++.+|..+..++ .|++|++++|.+++..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 5555666666666666666666666666666663 6666666666666543
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.1e-28 Score=268.77 Aligned_cols=245 Identities=20% Similarity=0.220 Sum_probs=187.0
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCC-CCCCcccc-------cCCCCCccEEECCCCcCcccCCCCCC-CCCC
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLS-GTIPACLI-------TKSSSTLEVLNLGRNNLNGTLSDTIF-PGDC 643 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~-------~~~~~~L~~L~Ls~N~l~~~ip~~~~-~~l~ 643 (967)
+++++|.+ .+|..+... |+.|++++|+++ +.+|..+. ... +|++|+|++|++++.+|..+| ..++
T Consensus 48 l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 48 LLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS--GLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp HHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS--CCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred Eeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC--CccEEEccCCcccchhHHHHHHhcCC
Confidence 55556665 555555443 667777777763 34554443 333 777777777777777777633 7778
Q ss_pred cccEEeCCCCccCCCCcccccCC-----CCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC--CCC
Q 046844 644 GLQILDLSGNQLQGVVPKSLANC-----NMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK--VSW 716 (967)
Q Consensus 644 ~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~--~~l 716 (967)
+|++|+|++|++++. |..+..+ ++|++|++++|++++..|..|+++++|++|++++|++.|.+..|..+ ..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 888888888888877 7777766 88888888888888888888888888888888888877653223333 778
Q ss_pred CCCcEEecCCccCcC--cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCC
Q 046844 717 PLLQIVDLACNKFSG--RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSS 794 (967)
Q Consensus 717 ~~L~~Ldls~N~l~g--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~ 794 (967)
++|+.|++++|++++ .++...+ ..++.|+.||+++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~-------------------------------------------~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALA-------------------------------------------AARVQLQGLDLSH 237 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHH-------------------------------------------HTTCCCSEEECTT
T ss_pred CCCCEEECCCCcCcchHHHHHHHH-------------------------------------------hcCCCCCEEECCC
Confidence 899999999998874 2222211 1356789999999
Q ss_pred CcccCCCc-ccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccC
Q 046844 795 NNFEGPIP-VEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK 872 (967)
Q Consensus 795 N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 872 (967)
|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|+.|||++|+|++. |. +..++.|++|++++|++++.
T Consensus 238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 99999886 55777899999999999999 8999887 8999999999999987 66 89999999999999999874
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.4e-27 Score=256.62 Aligned_cols=200 Identities=20% Similarity=0.240 Sum_probs=155.1
Q ss_pred EEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccc--cCChhhhcCCCCcEEEcccC
Q 046844 525 FLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAG--VIPESVCKATNFQVLDLSNN 602 (967)
Q Consensus 525 ~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~--~~p~~~~~~~~L~~L~Ls~N 602 (967)
.++++++.++..+...++++++|++++|+++.+|..++..++.++. |++++|.++. ..+..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK--LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSE--EECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCE--EECCCCccCcccCcccccccccccCEEECCCC
Confidence 3444454444433333455666666666666666555444555555 7777777763 34667778899999999999
Q ss_pred cCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCcccc-
Q 046844 603 NLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISD- 681 (967)
Q Consensus 603 ~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~- 681 (967)
.+. .+|..+.... +|++|++++|++++..+...|..+++|++|++++|.+++..|..|..+++|++|++++|++++
T Consensus 89 ~i~-~l~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 89 GVI-TMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SEE-EEEEEEETCT--TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ccc-cChhhcCCCC--CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 998 5777777665 999999999999954442458999999999999999999999999999999999999999987
Q ss_pred ccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcC
Q 046844 682 NFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG 731 (967)
Q Consensus 682 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g 731 (967)
..|..+..+++|++|++++|++++.. |..+..+++|+.|++++|++++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSB
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCc
Confidence 68899999999999999999999886 7777777777777777776653
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.6e-27 Score=259.20 Aligned_cols=256 Identities=22% Similarity=0.298 Sum_probs=167.6
Q ss_pred cCCCC--CCCCCCCcccceeEeCC--------C-CcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCc
Q 046844 18 LSQWS--SHQSSDCCDWSGVRCDE--------A-GHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPS 86 (967)
Q Consensus 18 l~~w~--~~~~~~~c~w~gv~C~~--------~-~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~ 86 (967)
+++|. .....++|.|.|+.|+. . .+|+.|+|+++.+. .+ +..++++++|++|+|++|.+. .+|.
T Consensus 47 ~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~n~l~--~lp~ 121 (328)
T 4fcg_A 47 HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF--PDQAFRLSHLQHMTIDAAGLM--ELPD 121 (328)
T ss_dssp HHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC--CSCGGGGTTCSEEEEESSCCC--CCCS
T ss_pred hhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc--ChhhhhCCCCCEEECCCCCcc--chhH
Confidence 56672 02356899999999952 2 68999999998887 56 677888999999999999988 4888
Q ss_pred cccCCCCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchh
Q 046844 87 RLGNLTNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTE 166 (967)
Q Consensus 87 ~l~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~ 166 (967)
.++++++|++|+|++|.+. .+|..++++++|++|++++|+... .+|. .+....
T Consensus 122 ~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~--------~~p~------~~~~~~------------ 174 (328)
T 4fcg_A 122 TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT--------ELPE------PLASTD------------ 174 (328)
T ss_dssp CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC--------CCCS------CSEEEC------------
T ss_pred HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc--------ccCh------hHhhcc------------
Confidence 8999999999999999988 889889999999999998764332 0000 000000
Q ss_pred HHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCC
Q 046844 167 WCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHV 246 (967)
Q Consensus 167 ~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 246 (967)
....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..+
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-------------------------l~~~l~~l 228 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-------------------------LGPAIHHL 228 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-------------------------CCGGGGGC
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-------------------------CchhhccC
Confidence 0011233455555555555554 334444444455555544444443 33344444
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc
Q 046844 247 PTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDF 326 (967)
Q Consensus 247 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 326 (967)
++|++|++++|.+.......+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.+++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 55555555544443333334445555666666666666677777778888888888888887788888888888888877
Q ss_pred cCccc
Q 046844 327 SSNHF 331 (967)
Q Consensus 327 ~~n~l 331 (967)
..+.+
T Consensus 309 ~~~~~ 313 (328)
T 4fcg_A 309 PPHLQ 313 (328)
T ss_dssp CGGGS
T ss_pred CHHHH
Confidence 76544
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-27 Score=265.57 Aligned_cols=279 Identities=19% Similarity=0.214 Sum_probs=216.7
Q ss_pred CccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEccc
Q 046844 522 GIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSN 601 (967)
Q Consensus 522 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~ 601 (967)
.....+++++.++..+....+++++|++++|+++.++......++.++. |++++|.+++..|..+.++++|++|++++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQA--LVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCE--EECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCE--EECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3444566666666544444556777777777777666644445566666 88888888888888888999999999999
Q ss_pred CcCCCCCCcc-cccCCCCCccEEECCCCcCcccCCC-CCCCCCCcccEEeCCCC-ccCCCCcccccCCCCCCEEECCCCc
Q 046844 602 NNLSGTIPAC-LITKSSSTLEVLNLGRNNLNGTLSD-TIFPGDCGLQILDLSGN-QLQGVVPKSLANCNMLQVLDLRSNY 678 (967)
Q Consensus 602 N~l~~~~p~~-~~~~~~~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~ 678 (967)
|++++ +|.. +.... +|++|++++|+++ .+|. ..|..+++|++|++++| .+.+..+..|.++++|++|++++|+
T Consensus 110 n~l~~-~~~~~~~~l~--~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 110 NYLSN-LSSSWFKPLS--SLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SCCSS-CCHHHHTTCT--TCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CcCCc-CCHhHhCCCc--cCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 99984 5544 55555 8999999999998 6776 55888999999999998 5777777889999999999999999
Q ss_pred cccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccccccc
Q 046844 679 ISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIE 758 (967)
Q Consensus 679 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 758 (967)
+++..|.++.++++|++|++++|++.... +..+..+++|+.|++++|++++..+..+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-------------------- 243 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFHFSELS-------------------- 243 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEECCCCccccccccccc--------------------
Confidence 99988999999999999999999986543 22344578999999999999875442210
Q ss_pred CCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC----CCcccccCCCCCcEEECCCCCCcccCCcc-ccCCC
Q 046844 759 MPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG----PIPVEMGRFRSLYALNMSHNALTGSIPSS-FGNLK 833 (967)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~ 833 (967)
.......++.++|+++.+++ .+|..++.+++|+.|||++|+++ .+|.. |++++
T Consensus 244 ---------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~ 301 (353)
T 2z80_A 244 ---------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301 (353)
T ss_dssp ------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred ---------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence 00123456677788888776 58889999999999999999999 57766 59999
Q ss_pred CCCeEeCcCccccccCC
Q 046844 834 EIESLDLSMNNLSGKIP 850 (967)
Q Consensus 834 ~L~~LdLs~N~l~g~ip 850 (967)
+|+.|+|++|.+++..|
T Consensus 302 ~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred CCCEEEeeCCCccCcCC
Confidence 99999999999998776
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.1e-26 Score=261.51 Aligned_cols=231 Identities=24% Similarity=0.217 Sum_probs=167.0
Q ss_pred CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 671 (967)
+++++|+|++|++++..|..+..+. +|++|+|++|++++..|.. |.++++|++|+|++|++++..+..|..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCccCCcChhh-ccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 3566666666666655555555544 6667777777666433333 677777777777777777666666777777777
Q ss_pred EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcc
Q 046844 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE 751 (967)
Q Consensus 672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~ 751 (967)
|+|++|++++..+..|.++++|+.|++++|...+.+. +..+..+++|+.|++++|++++. |.
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~-~~---------------- 213 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM-PN---------------- 213 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC-CC----------------
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc-cc----------------
Confidence 7777777776666667777777777777743333331 34566777777777777777532 20
Q ss_pred cccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccC
Q 046844 752 VNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN 831 (967)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 831 (967)
...++.|+.|||++|++++..|..|+.+++|+.|+|++|++++..|..|++
T Consensus 214 -----------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 214 -----------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp -----------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred -----------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 113567888888888888888888888999999999999999888888889
Q ss_pred CCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccC
Q 046844 832 LKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK 872 (967)
Q Consensus 832 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 872 (967)
+++|+.|||++|+|++..+..+..++.|+.|++++|.+...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99999999999999888888888888999999999887543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=260.43 Aligned_cols=229 Identities=23% Similarity=0.231 Sum_probs=142.8
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
+++.|+|++|++++..+..+..+. +|++|+|++|.++ .++...|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 344455555555433334443333 4555555555554 2222225555555555555555555544455555556666
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV 752 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~ 752 (967)
++++|++++..+..|.++++|+.|++++|...+.+. +..+..+++|+.|++++|+++. +|.
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~-~~~----------------- 202 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE-IPN----------------- 202 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS-CCC-----------------
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc-ccc-----------------
Confidence 666665555555555556666666665533222221 3345556666666666666541 220
Q ss_pred ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844 753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL 832 (967)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 832 (967)
...++.|+.|||++|++++..|..|..+++|+.|+|++|++++..|..|.++
T Consensus 203 ----------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 203 ----------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp ----------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred ----------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 0134567777888888877778888888888888888888888888888888
Q ss_pred CCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871 (967)
Q Consensus 833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 871 (967)
++|+.|||++|+|++..+..+..++.|+.|++++|.+..
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 888888888888888777778888888888888887754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-26 Score=248.96 Aligned_cols=229 Identities=21% Similarity=0.213 Sum_probs=178.0
Q ss_pred cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL 674 (967)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 674 (967)
+.++.+++.++ .+|..+ .++|++|++++|.+++ ++...|..+++|++|++++|++++..|..|..+++|++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~----~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI----PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCS-SCCTTC----CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcc-cCCcCC----CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 56777777776 566544 2278888888888874 44333778888888888888888777778888888888888
Q ss_pred CCCc-cccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccc
Q 046844 675 RSNY-ISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVN 753 (967)
Q Consensus 675 s~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~ 753 (967)
++|+ ++...|..|..+++|++|++++|++++.. |..+..+++|+.|++++|++++..+..+
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------- 149 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTF---------------- 149 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT----------------
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHh----------------
Confidence 8886 77766778888888888888888887765 6677788888888888888765433111
Q ss_pred cccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCC
Q 046844 754 HLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLK 833 (967)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 833 (967)
..++.|+.|++++|++++..+..|+.+++|+.|+|++|.+++.+|..|++++
T Consensus 150 ----------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 150 ----------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp ----------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred ----------------------------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 1356788888888888877666788888888999999988888888888888
Q ss_pred CCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCC
Q 046844 834 EIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 875 (967)
Q Consensus 834 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 875 (967)
+|+.||+++|++++..|..+..++.|++|++++|++.+..+.
T Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 899999999988887777788888888999998888876653
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.5e-25 Score=261.64 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=93.4
Q ss_pred CccEEECcCCccCCCCCcchhccCCCCcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCc
Q 046844 474 QLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNN 553 (967)
Q Consensus 474 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~ 553 (967)
+++.|++++|.++ .+|..+. ++|+.|++++|.++.++. .+++|++|++++|++++ +|..+++|++|++++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCc
Confidence 4666666666666 4454332 345666666665555544 34455555555555443 22233344444444443
Q ss_pred CCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc
Q 046844 554 FTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT 633 (967)
Q Consensus 554 l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ 633 (967)
++.+|. .+++|+.|++++|+++ .+|..+ . +|++|++++|+++ .
T Consensus 113 l~~l~~------------------------------~l~~L~~L~L~~N~l~-~lp~~l---~--~L~~L~Ls~N~l~-~ 155 (622)
T 3g06_A 113 LTHLPA------------------------------LPSGLCKLWIFGNQLT-SLPVLP---P--GLQELSVSDNQLA-S 155 (622)
T ss_dssp CCCCCC------------------------------CCTTCCEEECCSSCCS-CCCCCC---T--TCCEEECCSSCCS-C
T ss_pred CCCCCC------------------------------CCCCcCEEECCCCCCC-cCCCCC---C--CCCEEECcCCcCC-C
Confidence 333221 2345555555555555 344321 1 5555555555555 3
Q ss_pred CCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCC
Q 046844 634 LSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNK 713 (967)
Q Consensus 634 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~ 713 (967)
+|.. ..+|+.|++++|++++ +| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++.. |.
T Consensus 156 l~~~----~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l---~~-- 218 (622)
T 3g06_A 156 LPAL----PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL---PA-- 218 (622)
T ss_dssp CCCC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC---CC--
T ss_pred cCCc----cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc---CC--
Confidence 3332 2345555555555553 23 234555555555555554 221 134555555555555432 22
Q ss_pred CCCCCCcEEecCCccCc
Q 046844 714 VSWPLLQIVDLACNKFS 730 (967)
Q Consensus 714 ~~l~~L~~Ldls~N~l~ 730 (967)
.+++|+.|++++|+++
T Consensus 219 -~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLT 234 (622)
T ss_dssp -CCTTCCEEECCSSCCS
T ss_pred -CCCCCCEEEccCCccC
Confidence 1244555555555444
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.5e-25 Score=258.14 Aligned_cols=263 Identities=27% Similarity=0.302 Sum_probs=204.0
Q ss_pred CcceeecccccccCcCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCc
Q 046844 500 NLKFLNLSHNLVVSLQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNS 579 (967)
Q Consensus 500 ~L~~L~Ls~n~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~ 579 (967)
+++.|++++|.++.+|.... ++|+.|++++|.++. +|..+++|++|++++|+++.+|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp--------------------- 97 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLP--------------------- 97 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCC---------------------
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCC---------------------
Confidence 46666666666666655433 556666666666553 2224445555555555444333
Q ss_pred ccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCC
Q 046844 580 LAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVV 659 (967)
Q Consensus 580 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 659 (967)
. .+++|++|++++|+++ .+|. ... +|+.|++++|+++ .+|.. +++|++|++++|++++.
T Consensus 98 ------~---~l~~L~~L~Ls~N~l~-~l~~---~l~--~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~l- 156 (622)
T 3g06_A 98 ------V---LPPGLLELSIFSNPLT-HLPA---LPS--GLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL- 156 (622)
T ss_dssp ------C---CCTTCCEEEECSCCCC-CCCC---CCT--TCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSCC-
T ss_pred ------C---CCCCCCEEECcCCcCC-CCCC---CCC--CcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCCc-
Confidence 2 4678999999999998 4665 223 8999999999998 57764 37899999999999964
Q ss_pred cccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHH
Q 046844 660 PKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLL 739 (967)
Q Consensus 660 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~ 739 (967)
|. ..++|+.|++++|++++ +| ..+++|+.|++++|++++. |.. +++|+.|++++|.++. +|.
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~N~l~~-l~~---- 218 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA---- 218 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSCCSS-CCC----
T ss_pred CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcCCcccc-cCC----
Confidence 43 35789999999999998 45 4579999999999999875 432 4789999999999873 321
Q ss_pred HHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC
Q 046844 740 TMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN 819 (967)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N 819 (967)
.++.|+.|++++|++++ +| ..+++|+.|+|++|
T Consensus 219 -------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 219 -------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN 251 (622)
T ss_dssp -------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred -------------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC
Confidence 24678999999999997 66 55689999999999
Q ss_pred CCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844 820 ALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 820 ~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 876 (967)
+|+ .+|. .+++|+.|+|++|+|+ .+|..+.+++.|+.|++++|+++|.+|..
T Consensus 252 ~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 252 RLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 999 5777 6789999999999999 78999999999999999999999988853
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.9e-28 Score=261.81 Aligned_cols=264 Identities=19% Similarity=0.152 Sum_probs=200.5
Q ss_pred eeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECC
Q 046844 547 VDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLG 626 (967)
Q Consensus 547 L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls 626 (967)
.+++++.+...+..+....+.++. |++++|.+++..|..+..+++|++|++++|++++..| +.... +|++|+++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~--L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~--~L~~L~Ls 88 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLN 88 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSE--EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT--TCCEEECC
T ss_pred eeccccchhhhHHHHhccCCCCCE--EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC--CCCEEECc
Confidence 344444444444444444444555 7777777777777778888888888888888875443 54444 88888888
Q ss_pred CCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844 627 RNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706 (967)
Q Consensus 627 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 706 (967)
+|++++ ++ ..++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 89 ~n~l~~-l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQE-LL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEE-EE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccc-cc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 888874 33 2368888888888888665543 56788888888888888787888888888888888888876
Q ss_pred cCCCCCC-CCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCC
Q 046844 707 ISCPRNK-VSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPN 785 (967)
Q Consensus 707 ~~~p~~~-~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (967)
. +..+ ..+++|+.|++++|++++..+ ...++
T Consensus 160 ~--~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------------------------~~~l~ 191 (317)
T 3o53_A 160 N--FAELAASSDTLEHLNLQYNFIYDVKG----------------------------------------------QVVFA 191 (317)
T ss_dssp E--GGGGGGGTTTCCEEECTTSCCCEEEC----------------------------------------------CCCCT
T ss_pred c--HHHHhhccCcCCEEECCCCcCccccc----------------------------------------------ccccc
Confidence 5 5555 367888888888888764311 01256
Q ss_pred cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc-ccCCccccCCCCCCeEEc
Q 046844 786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS-GKIPAQLASLNFLSVLNL 864 (967)
Q Consensus 786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~l~l 864 (967)
.|+.|++++|++++. |..++.+++|+.|+|++|+++ .+|..++.+++|+.||+++|.++ +.+|..+..++.|+.+++
T Consensus 192 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 192 KLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 788999999999865 445899999999999999999 57888999999999999999998 888899999999999999
Q ss_pred c-CCccccCCCC
Q 046844 865 S-YNNLVGKIPT 875 (967)
Q Consensus 865 s-~N~l~g~ip~ 875 (967)
+ .+.++|..|.
T Consensus 270 ~~~~~l~~~~~~ 281 (317)
T 3o53_A 270 QTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHSSSSC
T ss_pred CCchhccCCchh
Confidence 8 5568887664
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.7e-25 Score=254.33 Aligned_cols=250 Identities=23% Similarity=0.195 Sum_probs=215.5
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
....++.+++.++ .+|..+. ++++.|+|++|++++..|.. |..+++|++|+|++|++++..|..|.++++|++|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~----~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP----SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC----TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEECCCCcC-ccCCCCC----CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 4568889999988 7887653 38999999999999655665 9999999999999999999999999999999999
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV 752 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~ 752 (967)
+|++|++++..+..|.++++|++|+|++|++++.. +..+..+++|+.|++++|+..+.+|...
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~--------------- 191 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP--SYAFNRVPSLMRLDLGELKKLEYISEGA--------------- 191 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTT---------------
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeC--HhHHhcCCcccEEeCCCCCCccccChhh---------------
Confidence 99999999988888999999999999999999876 6789999999999999977665555321
Q ss_pred ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844 753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL 832 (967)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 832 (967)
...++.|+.|+|++|++++. | .+..+++|+.|+|++|++++..|..|+++
T Consensus 192 ----------------------------~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 192 ----------------------------FEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp ----------------------------TTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred ----------------------------ccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc
Confidence 12567899999999999965 5 48999999999999999999999999999
Q ss_pred CCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCccCCCCCCCC
Q 046844 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG 895 (967)
Q Consensus 833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg 895 (967)
++|+.|+|++|++++..|..+.++++|+.|++++|++++..+.. ..+..+....+.+||.-|.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99999999999999999999999999999999999999766543 2233444555678875553
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.5e-27 Score=255.30 Aligned_cols=248 Identities=21% Similarity=0.232 Sum_probs=193.3
Q ss_pred CCceeeccCCcCCCCCcchhccccccceeeeeecCCcc-cccCChhhh-------cCCCCcEEEcccCcCCCCCCccc--
Q 046844 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSL-AGVIPESVC-------KATNFQVLDLSNNNLSGTIPACL-- 612 (967)
Q Consensus 543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l-~~~~p~~~~-------~~~~L~~L~Ls~N~l~~~~p~~~-- 612 (967)
+++++++++|.+ .+|..+... ++. +++++|.+ .+.+|..+. ++++|++|++++|++++.+|..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~---L~~--L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI---IKS--LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH---HHH--CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CceeEeeccccc-ccHHHHHHH---Hhh--cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 455566666666 666655433 334 77788887 456666665 68899999999999998888876
Q ss_pred ccCCCCCccEEECCCCcCcccCCCCCCCCC-----CcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccc--cch
Q 046844 613 ITKSSSTLEVLNLGRNNLNGTLSDTIFPGD-----CGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDN--FPC 685 (967)
Q Consensus 613 ~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~ 685 (967)
.... +|++|+|++|++++. |.. |..+ ++|++|+|++|++++..|..|..+++|++|++++|++.+. .|.
T Consensus 118 ~~l~--~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 118 ATGP--DLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CCSC--CCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred hcCC--CccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 4444 899999999999865 654 6555 8899999999999988889999999999999999998775 344
Q ss_pred hh--hcCCCCCEEEccCCccceecCCC-CCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCC
Q 046844 686 WL--RNASSLQVLVLRSNNFSGHISCP-RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSN 762 (967)
Q Consensus 686 ~l--~~l~~L~~L~L~~N~l~~~~~~p-~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (967)
.+ .++++|++|++++|++++....+ ..+..+++|+.||+++|++++.+|...
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------------- 248 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS------------------------- 248 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-------------------------
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-------------------------
Confidence 44 78999999999999998432112 233577899999999999987664211
Q ss_pred ceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcC
Q 046844 763 QFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSM 842 (967)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~ 842 (967)
...++.|+.|+|++|+++ .+|..+. ++|++|||++|++++. |. ++.+++|+.|||++
T Consensus 249 ------------------~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 249 ------------------CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp ------------------CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred ------------------hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 013577999999999998 8888777 8999999999999976 76 99999999999999
Q ss_pred cccccc
Q 046844 843 NNLSGK 848 (967)
Q Consensus 843 N~l~g~ 848 (967)
|.+++.
T Consensus 306 N~l~~~ 311 (312)
T 1wwl_A 306 NPFLDS 311 (312)
T ss_dssp CTTTCC
T ss_pred CCCCCC
Confidence 999863
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5.6e-25 Score=251.95 Aligned_cols=250 Identities=22% Similarity=0.205 Sum_probs=215.8
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
....++.+++.++ .+|..+. ++++.|+|++|++++..+.. |.++++|++|+|++|++++..+..|.++++|++|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~----~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS----TNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC----TTCSEEECCSCCCCEECTTT-TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC----CCCcEEEccCCcCCeeCHHH-hhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 4568899999998 7887763 38999999999999554455 9999999999999999999989999999999999
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV 752 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~ 752 (967)
+|++|++++..+..|..+++|++|+|++|++++.. +..+..+++|+.|++++|+..+.++...
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~--------------- 180 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSYISEGA--------------- 180 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC--TTTTTTCTTCCEEECCCCTTCCEECTTT---------------
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccC--HHHhhhCcccCEeCCCCCCCcceeCcch---------------
Confidence 99999999988889999999999999999999876 6789999999999999977665555321
Q ss_pred ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844 753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL 832 (967)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 832 (967)
+..++.|+.|++++|+++ .+| .++.+++|+.|+|++|++++..|..|.++
T Consensus 181 ----------------------------~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 181 ----------------------------FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp ----------------------------TTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred ----------------------------hhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccC
Confidence 125678999999999998 556 48999999999999999999999999999
Q ss_pred CCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC-CcCCccCCCccCCCCCCCC
Q 046844 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYEGNKGLYG 895 (967)
Q Consensus 833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg 895 (967)
++|+.|+|++|++++..|..|.++++|+.|++++|++++..+.. ..+..+....+.+||.-|.
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 99999999999999999999999999999999999999766543 2334444556678886664
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.7e-25 Score=238.83 Aligned_cols=234 Identities=21% Similarity=0.194 Sum_probs=181.9
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCc-CcccCCCCCCCCCCcccEEeCC
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN-LNGTLSDTIFPGDCGLQILDLS 651 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~L~ 651 (967)
|++++|.+++..+..+..+++|++|++++|.+++..|..+.... +|++|++++|. +. .++...|..+++|++|+++
T Consensus 37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECT
T ss_pred EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc--CCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECC
Confidence 55555555555556677788888888888888866677776665 88888888887 65 5543348888888888888
Q ss_pred CCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcC
Q 046844 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG 731 (967)
Q Consensus 652 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g 731 (967)
+|++++..|..|..+++|++|++++|++++..+..|.++++|++|++++|++++.. +..+..+++|+.|++++|++++
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCE
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC--HHHhcCccccCEEECCCCcccc
Confidence 88888888888888888899999888888877777888888899999988888775 5568888889999999988876
Q ss_pred cCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC
Q 046844 732 RLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL 811 (967)
Q Consensus 732 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L 811 (967)
..|..+ ..++.|+.|++++|++++..|..++.+++|
T Consensus 192 ~~~~~~--------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 192 VHPHAF--------------------------------------------RDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp ECTTTT--------------------------------------------TTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred cCHhHc--------------------------------------------cCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 655322 145678889999999998777789999999
Q ss_pred cEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCC
Q 046844 812 YALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL 856 (967)
Q Consensus 812 ~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 856 (967)
+.|+|++|.+++..+.. .-...++.++.+.+.+.+..|..+.+.
T Consensus 228 ~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~ 271 (285)
T 1ozn_A 228 QYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGR 271 (285)
T ss_dssp CEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred CEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCc
Confidence 99999999998755532 222345666788899999999887653
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=3.9e-27 Score=281.69 Aligned_cols=408 Identities=13% Similarity=0.073 Sum_probs=242.7
Q ss_pred ccccCCCCCCEEeCCCCCCC---ccCChhcc------------CCCCCCEEeCCCCCCCccccccccccHHHHhcC-CCC
Q 046844 86 SRLGNLTNLTYLNLSQGGFA---GEIPTEIS------------SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQN-LTE 149 (967)
Q Consensus 86 ~~l~~l~~L~~L~Ls~~~~~---~~lp~~l~------------~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~-l~~ 149 (967)
..+.++++|++|++++|... +.+|..++ .+++|++|++++|. ++ ...+..+.. +++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~-------~~~~~~l~~~~~~ 138 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VS-------DLDLDRLAKARAD 138 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CC-------HHHHHHHHHHHGG
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ec-------HHHHHHHHHhccc
Confidence 44556677777777665321 22332222 45566666666541 11 011111222 222
Q ss_pred -CCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCC----Ccchhhhc
Q 046844 150 -LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGL----SSGTEFLA 220 (967)
Q Consensus 150 -L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~----~~~~~~l~ 220 (967)
|++|+++++.-. ....+......+++|++|+|++|.+++. ++..+..+++|++|++++|.+. ..++..+.
T Consensus 139 ~L~~L~L~~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGF-TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEE-EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCc-CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 556655555310 1111222223455566666655554443 2223344555555555555554 12233334
Q ss_pred CCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEE
Q 046844 221 HLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRV 300 (967)
Q Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 300 (967)
++++|++|++++|.+.+ ++..+..+++|++|+++...... -....+..+..+++|+.|
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~---------------------~~~~~~~~l~~~~~L~~L 275 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI---------------------GMPEKYMNLVFPRKLCRL 275 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT---------------------TCTTSSSCCCCCTTCCEE
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccccccccc---------------------chHHHHHHhhcccccccc
Confidence 45555555555555543 44445555555555554321100 002334567788999999
Q ss_pred EccCCCCCCCCCccccCCCCCcEEEccCccccccCc-c-ccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCC--
Q 046844 301 EVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIP-S-LHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGH-- 376 (967)
Q Consensus 301 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-- 376 (967)
+++++.. ..+|..+..+++|++|++++|.+++... . ...+++|++|+++ +.+.+.........+++|++|++++
T Consensus 276 ~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 276 GLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp EETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred Cccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCc
Confidence 9998643 4677888899999999999999754332 2 3456699999999 4444333334357789999999994
Q ss_pred ---------CcCCCCcC-hhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEee----CCcCCCC-----CChhhh
Q 046844 377 ---------NSLSGSIP-RSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLS----GNRLEGP-----VPISIF 437 (967)
Q Consensus 377 ---------n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----i~~~~~ 437 (967)
+.+++... .....+++|++|+++.|.+++.........+++|+.|+++ .|.+++. ++ .++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~-~~~ 432 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR-SLL 432 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH-HHH
T ss_pred cccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH-HHH
Confidence 55654322 2345689999999988888865544433457899999997 5567642 22 234
Q ss_pred ccCCCCCEEECCCCc--ccccccCCCCCccCCC-CCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccccCc
Q 046844 438 FELRNLYTLDLSSNK--FSRLKLASSKPRAIPI-LKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLVVSL 514 (967)
Q Consensus 438 ~~l~~L~~L~Ls~n~--l~~l~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l~~l 514 (967)
.++++|+.|+++.|. ++... +.. ...+++|++|++++|++++.....+. ...++|++|++++|.++..
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~--------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLG--------LSYIGQYSPNVRWMLLGYVGESDEGLMEFS-RGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHH--------HHHHHHSCTTCCEEEECSCCSSHHHHHHHH-TCCTTCCEEEEESCCCBHH
T ss_pred HhCCCCCEEEEecCCCCccHHH--------HHHHHHhCccceEeeccCCCCCHHHHHHHH-hcCcccCeeeccCCCCcHH
Confidence 779999999997543 43211 111 23478899999999998753222221 2346899999999997542
Q ss_pred --CCC-CCCCCccEEeCCCCCCCCC
Q 046844 515 --QEP-YSISGIRFLDLHSNQLRGN 536 (967)
Q Consensus 515 --~~~-~~~~~L~~L~Ls~n~l~~~ 536 (967)
+.. ..+++|+.|++++|++++.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCccCeeECcCCcCCHH
Confidence 222 2378999999999999865
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.3e-26 Score=260.51 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=38.4
Q ss_pred CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEc
Q 046844 785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNL 864 (967)
Q Consensus 785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 864 (967)
+.|+.|+|++|.+++..+ +..++.|+.|+|++|.+++.+| .++.+++|+.|||++|.|++ +|..+..++.|+.|++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 344444455554444311 2234455555555555554322 24455555555555555553 3444444555555555
Q ss_pred cCCccc
Q 046844 865 SYNNLV 870 (967)
Q Consensus 865 s~N~l~ 870 (967)
++|.+.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 555544
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.8e-24 Score=229.79 Aligned_cols=228 Identities=22% Similarity=0.198 Sum_probs=187.4
Q ss_pred EEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECC
Q 046844 596 VLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLR 675 (967)
Q Consensus 596 ~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 675 (967)
..+.++..+. .+|..+. ++|++|++++|++++ ++...|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 11 ~~~c~~~~l~-~ip~~l~----~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP----FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp EEECTTSCCS-SCCSSSC----TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred eEEecCCCcc-ccCCCCC----CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence 3555566665 6676552 278899999999884 444348888999999999999988888888999999999999
Q ss_pred CCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcC-cCcHHHHHHHhhcccCCCccccc
Q 046844 676 SNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSG-RLSQKWLLTMMVAETKSGSEVNH 754 (967)
Q Consensus 676 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~ 754 (967)
+|++++..+..|.++++|++|++++|++++.. +..+..+++|+.|++++|++++ .+|..+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~~~----------------- 145 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYF----------------- 145 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGG-----------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccC--chhcccCCCCCEEECcCCccceecCchhh-----------------
Confidence 99999888888999999999999999998775 5578889999999999999876 345322
Q ss_pred ccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc----EEECCCCCCcccCCcccc
Q 046844 755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY----ALNMSHNALTGSIPSSFG 830 (967)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~----~L~Ls~N~l~g~ip~~~~ 830 (967)
..++.|+.|++++|++++..+..++.++.|+ .|++++|.+++..|..+.
T Consensus 146 ---------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 146 ---------------------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp ---------------------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred ---------------------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 2467789999999999988888888887777 899999999976666655
Q ss_pred CCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844 831 NLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 831 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 876 (967)
. .+|+.|||++|++++..+..+.+++.|+.|++++|++++..|.-
T Consensus 199 ~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 199 E-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp S-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred C-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 4 48999999999999888788899999999999999999988754
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.6e-25 Score=242.62 Aligned_cols=240 Identities=23% Similarity=0.188 Sum_probs=203.7
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~ 652 (967)
.+++.+.+....+..+..+++|++|++++|++++..|..+.... +|++|+|++|.+++..+ |..+++|++|++++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD---LESLSTLRTLDLNN 89 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEE---ETTCTTCCEEECCS
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchh---hhhcCCCCEEECcC
Confidence 67777777766666667788999999999999977667777766 99999999999996655 88899999999999
Q ss_pred CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR 732 (967)
Q Consensus 653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~ 732 (967)
|++++.. .+++|++|++++|++++..+.. +++|+.|++++|++++.. +..+..+++|+.||+++|++++.
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEE
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcc
Confidence 9998543 3489999999999999877654 688999999999999876 77888999999999999999876
Q ss_pred CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844 733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY 812 (967)
Q Consensus 733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~ 812 (967)
.|..+. ..++.|+.|++++|++++. |. ...+++|+
T Consensus 160 ~~~~~~-------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~ 194 (317)
T 3o53_A 160 NFAELA-------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK 194 (317)
T ss_dssp EGGGGG-------------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred cHHHHh-------------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCC
Confidence 553221 1357799999999999876 43 44599999
Q ss_pred EEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccc-cCCC
Q 046844 813 ALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV-GKIP 874 (967)
Q Consensus 813 ~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~-g~ip 874 (967)
.|+|++|++++. |..++.+++|+.|||++|++++ +|..+..++.|+.|++++|+++ +.+|
T Consensus 195 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred EEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 999999999975 5559999999999999999994 7888999999999999999998 5555
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-25 Score=256.08 Aligned_cols=245 Identities=20% Similarity=0.173 Sum_probs=208.9
Q ss_pred CCCcchhcccc---ccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcc
Q 046844 556 SIPADIGNFMS---ETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNG 632 (967)
Q Consensus 556 ~i~~~~~~~~~---~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~ 632 (967)
.+|..+..... .++. |++++|.+++..|..+..+++|++|+|++|.+++..| +..+. +|++|+|++|.+++
T Consensus 21 ~l~~~l~~l~~~~~~L~~--L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~--~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQE 94 (487)
T ss_dssp THHHHHHTTSTTGGGCCE--EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT--TCCEEECCSSEEEE
T ss_pred hhHHHHHHhcccCCCccE--EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC--CCCEEEecCCcCCC
Confidence 44554444332 4555 9999999999989999999999999999999987655 55555 99999999999984
Q ss_pred cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCC
Q 046844 633 TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRN 712 (967)
Q Consensus 633 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~ 712 (967)
+| ..++|++|++++|.+++..+.. +++|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+ |..
T Consensus 95 -l~-----~~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~ 163 (487)
T 3oja_A 95 -LL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAE 163 (487)
T ss_dssp -EE-----ECTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGG
T ss_pred -CC-----CCCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHH
Confidence 33 2378999999999999876654 578999999999999999999999999999999999999987 777
Q ss_pred CC-CCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEE
Q 046844 713 KV-SWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSID 791 (967)
Q Consensus 713 ~~-~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 791 (967)
+. .+++|+.|+|++|.+++..+. ..++.|+.||
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~----------------------------------------------~~l~~L~~L~ 197 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQ----------------------------------------------VVFAKLKTLD 197 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC----------------------------------------------CCCTTCCEEE
T ss_pred HhhhCCcccEEecCCCcccccccc----------------------------------------------ccCCCCCEEE
Confidence 76 799999999999999754220 1367899999
Q ss_pred CCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCcccc-ccCCccccCCCCCCeEEcc
Q 046844 792 FSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLS-GKIPAQLASLNFLSVLNLS 865 (967)
Q Consensus 792 Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~l~ls 865 (967)
|++|++++..| .++.++.|+.|||++|.+++ +|..++.+++|+.||+++|.+. +.+|..+..++.|+.++++
T Consensus 198 Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 198 LSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999998555 49999999999999999996 7888999999999999999998 8888999999888888876
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=216.23 Aligned_cols=92 Identities=18% Similarity=0.263 Sum_probs=62.9
Q ss_pred CCCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCCCCc
Q 046844 27 SDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGGFAG 106 (967)
Q Consensus 27 ~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~~~~ 106 (967)
.++|+|.|+.|...+.++.++++++.++. + |..+. ++|++|+|++|.+.+. .+..+.++++|++|++++|.+.
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-i--p~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~- 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-I--PSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ- 74 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-C--CSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS-
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-c--CCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC-
Confidence 58999999999655567788888887763 4 33343 5778888888887743 3346777888888888877776
Q ss_pred cCCh-hccCCCCCCEEeCCC
Q 046844 107 EIPT-EISSLTRLVTLDLSG 125 (967)
Q Consensus 107 ~lp~-~l~~l~~L~~L~Ls~ 125 (967)
.+|. .+.++++|++|++++
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCS
T ss_pred eeChhhhcCCCCCCEEECCC
Confidence 3443 335555555555554
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.1e-23 Score=216.98 Aligned_cols=206 Identities=23% Similarity=0.249 Sum_probs=149.3
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
+.+.+++++++++ .+|..+. ++++.|++++|+++ .++...|..+++|++|++++|+++...+..|..+++|++|
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP----ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCC-ccCCCCC----CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 4677888888877 5666542 26777888888777 4554447777777777777777776666666777777777
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV 752 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~ 752 (967)
++++|++++..+..|.++++|++|++++|++++.. +..+..+++
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~---------------------------------- 134 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTK---------------------------------- 134 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTT----------------------------------
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--HHHhCcCcC----------------------------------
Confidence 77777777766666677777777777777776554 344444444
Q ss_pred ccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCC
Q 046844 753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNL 832 (967)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 832 (967)
|+.|++++|++++..+..|+.+++|+.|+|++|++++..|..|.++
T Consensus 135 ----------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 135 ----------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp ----------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ----------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 4555555555555555557788888888888888887777778888
Q ss_pred CCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCC
Q 046844 833 KEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 833 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 874 (967)
++|+.|||++|++++..+..+..++.|+.|++++|.+....+
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 888888888888887777778888888888888888877654
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.6e-26 Score=276.57 Aligned_cols=435 Identities=15% Similarity=0.105 Sum_probs=300.9
Q ss_pred CCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCCCCCCeeeCCCCCCCC-CC-CC------------ccccCCCC
Q 046844 28 DCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDLQYLQSLNLGFTLFKG-FQ-IP------------SRLGNLTN 93 (967)
Q Consensus 28 ~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~-lp------------~~l~~l~~ 93 (967)
-|++|.++.. ...+.+++...... . +...+.++++|++|+|+++.... .. .| .....+++
T Consensus 33 vck~W~~~~~---~~~~~l~~~~~~~~--~-~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~ 106 (594)
T 2p1m_B 33 VCKSWYEIER---WCRRKVFIGNCYAV--S-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106 (594)
T ss_dssp SCHHHHHHHH---HHCCEEEESSTTSS--C-HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHHHHHHhhh---hhceEEeecccccc--C-HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence 4668999822 23345566543321 1 12345688999999999875221 10 11 22346889
Q ss_pred CCEEeCCCCCCCccCChhcc-CCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchhHHHHh-
Q 046844 94 LTYLNLSQGGFAGEIPTEIS-SLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTEWCKAL- 171 (967)
Q Consensus 94 L~~L~Ls~~~~~~~lp~~l~-~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l- 171 (967)
|++|+|++|.+.+..+..+. .+++|++|++++|..++ ...++..+.++++|++|++++|.+++.+..+...+
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~------~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS------TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE------HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC------HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 99999999999887777776 79999999999874332 23366667789999999999999877666666555
Q ss_pred cCCCCccEEEccCCC--CCCC-CcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCC------Cccchh
Q 046844 172 SFLPNLQVLSLSGCD--LSGP-INHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQ------GKFPEK 242 (967)
Q Consensus 172 ~~l~~L~~L~Ls~~~--l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~~~~~~ 242 (967)
..+++|++|++++|. +... +...+..+++|++|++++|...+.++..+..+++|++|+++.+... ..++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 478999999999997 2211 1222356799999999999554557888889999999998766421 124457
Q ss_pred ccCCCCCCEE-eccCCCCCCCCCCCC-CCCCCCCEEEccCCCCCCCcc-ccccCCCCCCEEEccCCCCCCC-CCccccCC
Q 046844 243 ILHVPTLETL-DLSINQLLQGSLPNF-PKNSSLRDLILSHTGLSGTLP-DSIGNLENLTRVEVSSCNFTGP-IPPSMANL 318 (967)
Q Consensus 243 l~~l~~L~~L-~L~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l 318 (967)
+.++++|+.| .+.... ...++.+ ..+++|++|++++|.+++... ..+..+++|++|++++| +... ++.....+
T Consensus 261 l~~~~~L~~Ls~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAV--PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHTCTTCCEEECCBTCC--GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HhcCCCcccccCCcccc--hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 7899999999 444322 1222222 247899999999999765432 33568999999999988 4321 22223358
Q ss_pred CCCcEEEccC---------ccccccC-cccc-ccCcccEEECCCCCCCCCCChhhhhcccCccEEEcC--C----CcCCC
Q 046844 319 TQLFHMDFSS---------NHFFGPI-PSLH-KSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLG--H----NSLSG 381 (967)
Q Consensus 319 ~~L~~L~L~~---------n~l~~~~-~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~--~----n~l~~ 381 (967)
++|++|++.+ +.+++.. .... .+++|++|.++.+.+++.........+++|+.|+++ + +.+++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 8999999944 3333211 1112 356999999988988865555534468999999999 4 45552
Q ss_pred C-----cChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCccccc
Q 046844 382 S-----IPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456 (967)
Q Consensus 382 ~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l 456 (967)
. ++..+..+++|+.|++++ .+++.........+++|+.|++++|.+++.....+...+++|++|++++|.++..
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 2 122366789999999977 5554333322224788999999999987655555557799999999999998532
Q ss_pred ccCCCCCccCCC-CCCCCCccEEECcCCccC
Q 046844 457 KLASSKPRAIPI-LKNQSQLSVLDISDNQIS 486 (967)
Q Consensus 457 ~~~~~~~~~ip~-l~~~~~L~~L~Ls~n~i~ 486 (967)
.. .. ...+++|++|++++|.++
T Consensus 497 ~~--------~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 AL--------LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HH--------HHTGGGGGGSSEEEEESSCCB
T ss_pred HH--------HHHHHhCCCCCEEeeeCCCCC
Confidence 21 11 455789999999999885
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.5e-23 Score=221.51 Aligned_cols=204 Identities=20% Similarity=0.190 Sum_probs=129.3
Q ss_pred hcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844 589 CKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668 (967)
Q Consensus 589 ~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 668 (967)
..+++|+.|++++|.++ .++ .+..+. +|++|++++|.+++ ++ . +..+++|++|++++|++++..+..|..+++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~--~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GIQYLP--NVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGGCT--TCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccceeeeeeCCCCcc-ccc-ccccCC--CCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 34556666666666654 222 233333 55555555555542 22 1 444555555555555555444444555555
Q ss_pred CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS 748 (967)
Q Consensus 669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~ 748 (967)
|++|++++|++++..+..|.++++|++|++++|++++.. +..+.
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~---------------------------------- 154 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFD---------------------------------- 154 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTT----------------------------------
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhc----------------------------------
Confidence 555555555555544444444555555555555444332 22222
Q ss_pred CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCcc
Q 046844 749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSS 828 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 828 (967)
.++.|+.|++++|++++..|..++.+++|+.|+|++|++++..|..
T Consensus 155 ----------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 155 ----------------------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp ----------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ----------------------------------cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence 3455667777777777777777888999999999999999988888
Q ss_pred ccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCC
Q 046844 829 FGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 829 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 876 (967)
++.+++|+.|++++|.+.|..| .|+.++++.|+++|.||..
T Consensus 201 ~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred HhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 9999999999999999887654 5888999999999999964
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3e-23 Score=220.91 Aligned_cols=227 Identities=21% Similarity=0.217 Sum_probs=181.2
Q ss_pred CCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccE
Q 046844 543 NTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEV 622 (967)
Q Consensus 543 ~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~ 622 (967)
.+..+++..+.+..+.. ...+..++. +++++|.+... ..+..+++|++|++++|.+++ ++ .+..+. +|++
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~~l~~L~~--L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~--~L~~ 89 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QNELNSIDQ--IIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-ALKELT--NLTY 89 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHHTTCCE--EECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GGTTCT--TCCE
T ss_pred HHHHHHhcCcccccccc--cccccceee--eeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hhcCCC--CCCE
Confidence 34456666776664432 122445555 99999998753 358889999999999999985 43 555555 9999
Q ss_pred EECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCc
Q 046844 623 LNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNN 702 (967)
Q Consensus 623 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 702 (967)
|++++|.+++ ++...|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+.++++|+.|++++|+
T Consensus 90 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 90 LILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 9999999995 555548999999999999999999888889999999999999999999888889999999999999999
Q ss_pred cceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecc
Q 046844 703 FSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLK 782 (967)
Q Consensus 703 l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (967)
+++.. +..+..+++|+
T Consensus 169 l~~~~--~~~~~~l~~L~-------------------------------------------------------------- 184 (272)
T 3rfs_A 169 LQSLP--EGVFDKLTQLK-------------------------------------------------------------- 184 (272)
T ss_dssp CCCCC--TTTTTTCTTCC--------------------------------------------------------------
T ss_pred cCccC--HHHhcCCccCC--------------------------------------------------------------
Confidence 98764 44445555544
Q ss_pred cCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC
Q 046844 783 VPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN 857 (967)
Q Consensus 783 ~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 857 (967)
.|++++|++++..|..++.+++|+.|+|++|.++|..| .|+.|+++.|+++|.+|..++.+.
T Consensus 185 ------~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 185 ------DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ------EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ------EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCcccccC
Confidence 45555555556666678889999999999999987654 688999999999999999887654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.2e-22 Score=217.03 Aligned_cols=212 Identities=21% Similarity=0.219 Sum_probs=130.2
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
+|++|++++|++++..+..+.... +|++|++++|+++ .++...|..+++|++|++++|++++..+..|.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT--TCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhcccc--CCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 455555555555543333444333 5555555555555 2333225555666666666666665555556666666666
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccc
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEV 752 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~ 752 (967)
++++|++++..+..+.++++|++|++++|++++. ..|..+..+++|+.|++++|++++..+..+. .+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l----------- 172 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VL----------- 172 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HH-----------
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHHhh-hh-----------
Confidence 6666666655555556666666666666666542 1155566666666666666666544332211 00
Q ss_pred ccccccCCCCceeeEEEEEEEccceeeecccCCcce-EEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccC
Q 046844 753 NHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFT-SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN 831 (967)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 831 (967)
..++.+. .+++++|++++..|..+. ..+|+.|+|++|++++..+..|++
T Consensus 173 -----------------------------~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 173 -----------------------------HQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp -----------------------------HTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred -----------------------------hhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence 0122232 688999998876665554 447999999999999877777899
Q ss_pred CCCCCeEeCcCccccccCC
Q 046844 832 LKEIESLDLSMNNLSGKIP 850 (967)
Q Consensus 832 l~~L~~LdLs~N~l~g~ip 850 (967)
+++|+.|+|++|.+++..|
T Consensus 223 l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSCCEEECCSSCBCCCTT
T ss_pred cccccEEEccCCcccccCC
Confidence 9999999999999998654
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=228.66 Aligned_cols=232 Identities=19% Similarity=0.181 Sum_probs=176.7
Q ss_pred CCCcEEEcccCcCCCC-CCcc--cccCCCCCccEEECCCCcCcccCCCCCC-CCCCcccEEeCCCCccCCCCc----ccc
Q 046844 592 TNFQVLDLSNNNLSGT-IPAC--LITKSSSTLEVLNLGRNNLNGTLSDTIF-PGDCGLQILDLSGNQLQGVVP----KSL 663 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~-~p~~--~~~~~~~~L~~L~Ls~N~l~~~ip~~~~-~~l~~L~~L~L~~N~l~~~~p----~~~ 663 (967)
..++.+.+.++.++.. +... ..... +|++|++++|.+++.+|...+ ..+++|++|+|++|++++..+ ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYS--RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHS--CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccC--ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3466677766665421 1100 11122 688888888888877777733 778888999999998887655 345
Q ss_pred cCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCcccee--cCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHH
Q 046844 664 ANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH--ISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTM 741 (967)
Q Consensus 664 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~ 741 (967)
..+++|++|++++|++++..|..|+++++|++|+|++|++.+. +..+..+..+++|++|++++|+++. +|.... .
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~- 218 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA-A- 218 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-H-
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-H-
Confidence 5788999999999999988888899999999999999988663 2112344688999999999999963 222110 0
Q ss_pred hhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCC---CCCcEEECCC
Q 046844 742 MVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRF---RSLYALNMSH 818 (967)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l---~~L~~L~Ls~ 818 (967)
....++.|+.|||++|++++.+|..++.+ ++|++|+|++
T Consensus 219 --------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 219 --------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp --------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred --------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 00135678999999999999999888887 6999999999
Q ss_pred CCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844 819 NALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871 (967)
Q Consensus 819 N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 871 (967)
|+++ .+|..+. ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999 7898885 8999999999999974 33 6788999999999999964
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.8e-22 Score=211.93 Aligned_cols=199 Identities=21% Similarity=0.216 Sum_probs=125.6
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 698 (967)
+++.+++++|.++ .+|.. +. +++++|+|++|++++..|..|..+++|+.|++++|.+++..+. ..+++|++|++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~-~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSCCS-SCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred CccEEECCCCCCC-cCCCC-CC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 4555555555554 44444 21 3455555555555555555555666666666666666554332 45566666666
Q ss_pred cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778 (967)
Q Consensus 699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (967)
++|+++.. |..+..+++|+.|++++|++++..|..+
T Consensus 85 s~N~l~~l---~~~~~~l~~L~~L~l~~N~l~~l~~~~~----------------------------------------- 120 (290)
T 1p9a_G 85 SHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGAL----------------------------------------- 120 (290)
T ss_dssp CSSCCSSC---CCCTTTCTTCCEEECCSSCCCCCCSSTT-----------------------------------------
T ss_pred CCCcCCcC---chhhccCCCCCEEECCCCcCcccCHHHH-----------------------------------------
Confidence 66666532 5555566666666666666654332111
Q ss_pred eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844 779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF 858 (967)
Q Consensus 779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 858 (967)
..++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|+ .+|..+..+..
T Consensus 121 ---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~ 196 (290)
T 1p9a_G 121 ---RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196 (290)
T ss_dssp ---TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred ---cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccccc
Confidence 13455677777777777666666777888888888888888655566777888888888888887 56777777778
Q ss_pred CCeEEccCCcccc
Q 046844 859 LSVLNLSYNNLVG 871 (967)
Q Consensus 859 L~~l~ls~N~l~g 871 (967)
|+.+++++|.+..
T Consensus 197 L~~l~L~~Np~~C 209 (290)
T 1p9a_G 197 LPFAFLHGNPWLC 209 (290)
T ss_dssp CSEEECCSCCBCC
T ss_pred CCeEEeCCCCccC
Confidence 8888888887754
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=5.7e-22 Score=208.33 Aligned_cols=182 Identities=18% Similarity=0.187 Sum_probs=115.7
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 698 (967)
..++++++++.++ .+|.. +. ++++.|+|++|++++..+..|.++++|++|++++|++++..|..|.++++|++|+|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4455566666655 55554 22 35666666666666666666666666666666666666666666666666666666
Q ss_pred cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778 (967)
Q Consensus 699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (967)
++|++++.. +..+..+++|+.
T Consensus 91 ~~n~l~~~~--~~~~~~l~~L~~--------------------------------------------------------- 111 (251)
T 3m19_A 91 ANNQLASLP--LGVFDHLTQLDK--------------------------------------------------------- 111 (251)
T ss_dssp TTSCCCCCC--TTTTTTCTTCCE---------------------------------------------------------
T ss_pred CCCcccccC--hhHhcccCCCCE---------------------------------------------------------
Confidence 666665443 333344444443
Q ss_pred eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844 779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF 858 (967)
Q Consensus 779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 858 (967)
|+|++|++++..|..|+.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++..|..+..++.
T Consensus 112 -----------L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 112 -----------LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp -----------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -----------EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 444444444444445666777777777777777666667777777888888888777777777777777
Q ss_pred CCeEEccCCccccCCC
Q 046844 859 LSVLNLSYNNLVGKIP 874 (967)
Q Consensus 859 L~~l~ls~N~l~g~ip 874 (967)
|+.|++++|++++..+
T Consensus 181 L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 181 LQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCEEECCSCCBCTTST
T ss_pred CCEEEeeCCceeCCcc
Confidence 8888888888777644
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.8e-21 Score=207.13 Aligned_cols=212 Identities=21% Similarity=0.208 Sum_probs=168.2
Q ss_pred CCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcc
Q 046844 521 SGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLS 600 (967)
Q Consensus 521 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls 600 (967)
++++.++++++.++..++..++.+++|++++|.++.++......+..++. |++++|.+++..+. ..+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~--L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ--LNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCE--EECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCE--EECCCCccCcccCC--CCCCcCCEEECC
Confidence 34555555555555444444455666666666666555444444555555 77777777765443 578899999999
Q ss_pred cCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccc
Q 046844 601 NNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS 680 (967)
Q Consensus 601 ~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 680 (967)
+|+++ .+|..+.... +|++|++++|+++ .+|...|..+++|++|+|++|++++..+..|..+++|+.|++++|+++
T Consensus 86 ~N~l~-~l~~~~~~l~--~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLP--ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp SSCCS-SCCCCTTTCT--TCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCC-cCchhhccCC--CCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99998 7888776665 9999999999999 566555999999999999999999888888999999999999999999
Q ss_pred cccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844 681 DNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV 743 (967)
Q Consensus 681 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 743 (967)
+..+..|.++++|+.|+|++|+++.. |..+...++|+.+++++|++.+.+...++..++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCcc---ChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 98888889999999999999999954 8888889999999999999999887666655543
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1e-24 Score=260.75 Aligned_cols=427 Identities=16% Similarity=0.125 Sum_probs=288.4
Q ss_pred CcEEEEECCCCCcccccCCC-C-----------C-CcCCCCCCeeeCCCCCCCCCCCCcccc-CCCCCCEEeCCCC-CCC
Q 046844 41 GHVIGLDLSWEPIIGGLENA-T-----------G-LFDLQYLQSLNLGFTLFKGFQIPSRLG-NLTNLTYLNLSQG-GFA 105 (967)
Q Consensus 41 ~~v~~L~L~~~~l~g~~~~~-~-----------~-l~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~~-~~~ 105 (967)
.++++|+++++.....+... . . ...+++|++|+|+++.+.+. .+..+. .+++|++|+|++| .+.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCC
Confidence 57889999887543322111 0 1 23688999999999988765 444554 6899999999999 454
Q ss_pred cc-CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCCcchh-HHHHhcCCCCccEEEcc
Q 046844 106 GE-IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSASGTE-WCKALSFLPNLQVLSLS 183 (967)
Q Consensus 106 ~~-lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~l~~L~~L~Ls 183 (967)
+. ++..+.++++|++|++++|. ++. .....++.....+++|++|+++++. ...... +...+..+++|++|+++
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~-i~~---~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESD-VDD---VSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCE-EEC---CCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhCCCCCEEeCcCCc-cCC---cchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence 32 45555689999999999975 321 1122234445688999999999986 222222 23333568999999999
Q ss_pred CCCCCCCCcccccCCCCCCEEEccCCCCC------CcchhhhcCCCCCCEE-eccCCCCCCccchhccCCCCCCEEeccC
Q 046844 184 GCDLSGPINHYLAKSRSLSVIRLHYNYGL------SSGTEFLAHLTNLKAL-DLSECGLQGKFPEKILHVPTLETLDLSI 256 (967)
Q Consensus 184 ~~~l~~~~~~~l~~l~~L~~L~L~~n~~~------~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 256 (967)
+|.....++..+..+++|+.|+++.+... ..++..+.++++|+.| .+.+... +.++..+..+++|++|++++
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 98333336777889999999998766421 1234567899999999 4444332 34555556789999999999
Q ss_pred CCCCCCCCCC-CCCCCCCCEEEccCCCCCCC-ccccccCCCCCCEEEccC---------CCCCCCCCccc-cCCCCCcEE
Q 046844 257 NQLLQGSLPN-FPKNSSLRDLILSHTGLSGT-LPDSIGNLENLTRVEVSS---------CNFTGPIPPSM-ANLTQLFHM 324 (967)
Q Consensus 257 n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~~~~~~l-~~l~~L~~L 324 (967)
|.+....+.. +..+++|++|++++| +... ++.....+++|++|++++ +.+++.....+ ..+++|++|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 9854332222 446899999999988 3322 222334589999999944 34442222222 247899999
Q ss_pred EccCccccccCcccc--ccCcccEEECC--C----CCCCCCCCh----hhhhcccCccEEEcCCCcCCCCcChhccC-CC
Q 046844 325 DFSSNHFFGPIPSLH--KSRNLNNLDLS--F----NNLSGGISS----TFWEQLLNLQIVVLGHNSLSGSIPRSLFL-LP 391 (967)
Q Consensus 325 ~L~~n~l~~~~~~~~--~~~~L~~L~L~--~----n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~ 391 (967)
.+..+.+++...... .+++|+.|+++ + +.+++.... ..+..+++|++|++++ .+++..+..+.. ++
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 988888876433322 35699999998 3 455421111 1256789999999977 666655556655 89
Q ss_pred CCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCC-C
Q 046844 392 NLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPIL-K 470 (967)
Q Consensus 392 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l-~ 470 (967)
+|+.|++++|.+++.........+++|+.|++++|.+++.....+...+++|+.|++++|+++.-.. ..+ .
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~~l~~ 528 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGAC--------KLLGQ 528 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHH--------HHHHH
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHH--------HHHHH
Confidence 9999999999987544333324588999999999998654444454678999999999998853211 112 4
Q ss_pred CCCCccEEECcCCc
Q 046844 471 NQSQLSVLDISDNQ 484 (967)
Q Consensus 471 ~~~~L~~L~Ls~n~ 484 (967)
.+++|+...+..+.
T Consensus 529 ~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 529 KMPKLNVEVIDERG 542 (594)
T ss_dssp HCTTEEEEEECSSS
T ss_pred hCCCCEEEEecCCC
Confidence 45677776666554
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.7e-23 Score=231.17 Aligned_cols=260 Identities=20% Similarity=0.195 Sum_probs=191.0
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCC----cccccCCCCCccEEECCCCcCcccCCCCCCCCC-----C
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIP----ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGD-----C 643 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l-----~ 643 (967)
+.++.|.++|.+|..+...++|++|++++|.+++..+ ..+..... +|++|+|++|.+++..+.. |..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDE-LVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCT-TCCEEECCSSCGGGSCHHH-HHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCC-ceeEEECcCCCCCHHHHHH-HHHHHhccCC
Confidence 5677888888888877777779999999999885544 34433321 6899999999888554443 4443 7
Q ss_pred cccEEeCCCCccCCCCcccc----cCC-CCCCEEECCCCccccccchhhhc-----CCCCCEEEccCCccceec--CCCC
Q 046844 644 GLQILDLSGNQLQGVVPKSL----ANC-NMLQVLDLRSNYISDNFPCWLRN-----ASSLQVLVLRSNNFSGHI--SCPR 711 (967)
Q Consensus 644 ~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~~--~~p~ 711 (967)
+|++|+|++|++++..+..+ ..+ ++|++|++++|++++..+..+.. .++|++|+|++|++++.. ..+.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 89999999999987776644 444 89999999999998877766554 368999999999987421 0123
Q ss_pred CCCCCC-CCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccC-CcceE
Q 046844 712 NKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVP-NIFTS 789 (967)
Q Consensus 712 ~~~~l~-~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 789 (967)
.+..++ +|+.|++++|++++..+..+...+ ... +.|+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------~~~~~~L~~ 200 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------ASIPASVTS 200 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------HTSCTTCCE
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------HhCCCCCCE
Confidence 334454 899999999999877765443111 122 47889
Q ss_pred EECCCCcccCC----CcccccCC-CCCcEEECCCCCCcccCC----ccccCCCCCCeEeCcCccccccC-------Cccc
Q 046844 790 IDFSSNNFEGP----IPVEMGRF-RSLYALNMSHNALTGSIP----SSFGNLKEIESLDLSMNNLSGKI-------PAQL 853 (967)
Q Consensus 790 l~Ls~N~l~g~----ip~~~~~l-~~L~~L~Ls~N~l~g~ip----~~~~~l~~L~~LdLs~N~l~g~i-------p~~l 853 (967)
|||++|++++. +|..+..+ +.|+.|||++|.+++..+ ..+..+++|+.|+|++|.+++.. +..+
T Consensus 201 L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 99999999874 55556554 589999999999998655 34567899999999999955433 3467
Q ss_pred cCCCCCCeEEccCCccccCCC
Q 046844 854 ASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 854 ~~l~~L~~l~ls~N~l~g~ip 874 (967)
..++.|+.||+++|++.+..|
T Consensus 281 ~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 281 PNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTCCEEEEECTTSCBCCGGGC
T ss_pred ccCCceEEEecCCCcCCCcch
Confidence 788889999999999877633
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.8e-23 Score=235.25 Aligned_cols=249 Identities=16% Similarity=0.217 Sum_probs=194.3
Q ss_pred cCChhhhcCCCCcEEEcccCcCCCCCCc----ccccCCCCCccEEECCCC---cCcccCCCCC------CCCCCcccEEe
Q 046844 583 VIPESVCKATNFQVLDLSNNNLSGTIPA----CLITKSSSTLEVLNLGRN---NLNGTLSDTI------FPGDCGLQILD 649 (967)
Q Consensus 583 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~----~~~~~~~~~L~~L~Ls~N---~l~~~ip~~~------~~~l~~L~~L~ 649 (967)
.++..+..+++|+.|++++|++++..+. .+.... +|++|+|++| ++++.+|..+ |..+++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT--TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC--CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 4556777888899999999988764332 344444 8999999985 4455556542 36789999999
Q ss_pred CCCCccCC----CCcccccCCCCCCEEECCCCccccccchhhhc----C---------CCCCEEEccCCccc-eecCCC-
Q 046844 650 LSGNQLQG----VVPKSLANCNMLQVLDLRSNYISDNFPCWLRN----A---------SSLQVLVLRSNNFS-GHISCP- 710 (967)
Q Consensus 650 L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~----l---------~~L~~L~L~~N~l~-~~~~~p- 710 (967)
|++|++++ .+|..+..+++|++|+|++|.+++..+..+.. + ++|++|++++|+++ +.+ +
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~ 178 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--KE 178 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--HH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH--HH
Confidence 99999997 47778899999999999999998655554444 4 89999999999997 222 3
Q ss_pred --CCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcce
Q 046844 711 --RNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFT 788 (967)
Q Consensus 711 --~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 788 (967)
..+..+++|+.|++++|+++..--..+.. .....++.|+
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~---------------------------------------~~l~~~~~L~ 219 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL---------------------------------------EGLAYCQELK 219 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHH---------------------------------------TTGGGCTTCC
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHH---------------------------------------HHhhcCCCcc
Confidence 35667889999999999886210000100 0012467799
Q ss_pred EEECCCCccc----CCCcccccCCCCCcEEECCCCCCccc----CCccc--cCCCCCCeEeCcCccccc----cCCccc-
Q 046844 789 SIDFSSNNFE----GPIPVEMGRFRSLYALNMSHNALTGS----IPSSF--GNLKEIESLDLSMNNLSG----KIPAQL- 853 (967)
Q Consensus 789 ~l~Ls~N~l~----g~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~--~~l~~L~~LdLs~N~l~g----~ip~~l- 853 (967)
.|+|++|+++ +.+|..+..+++|+.|+|++|.+++. +|..+ +.+++|+.|+|++|.+++ .+|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 9999999997 77899999999999999999999987 67777 449999999999999999 588888
Q ss_pred cCCCCCCeEEccCCccccCCC
Q 046844 854 ASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 854 ~~l~~L~~l~ls~N~l~g~ip 874 (967)
.+++.|++|++++|++++..|
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTSH
T ss_pred hcCCCceEEEccCCcCCcchh
Confidence 678999999999999998775
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-22 Score=224.67 Aligned_cols=238 Identities=20% Similarity=0.207 Sum_probs=168.8
Q ss_pred CCCCcccceeEeCCCCcEEEEECCCCCcccccCCCCCCcCC--CCCCeeeCCCCCCCCCCCCccccCCCCCCEEeCCCCC
Q 046844 26 SSDCCDWSGVRCDEAGHVIGLDLSWEPIIGGLENATGLFDL--QYLQSLNLGFTLFKGFQIPSRLGNLTNLTYLNLSQGG 103 (967)
Q Consensus 26 ~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~~~ 103 (967)
+.-|.+|.++.|+. ..++.++++++.+.. ..+..+ +++++|++++|.+.+. .+ .+..+++|++|++++|.
T Consensus 33 ~~vc~~W~~~~~~~-~~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 33 SGVCKRWYRLASDE-SLWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TSSCHHHHHHHTCS-TTSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCE
T ss_pred HHHHHHHHHHhcCc-hhheeeccccccCCH-----HHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCC
Confidence 34577899999864 457889999887762 345666 8999999999998865 34 46789999999999999
Q ss_pred CCcc-CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCc-cCCCcchhHHHHhcCCCCccEEE
Q 046844 104 FAGE-IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRV-DLSASGTEWCKALSFLPNLQVLS 181 (967)
Q Consensus 104 ~~~~-lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~l~~L~~L~ 181 (967)
+.+. +|..+.++++|++|++++|. +. ...+..+.++++|++|++++| .++.. .+...+..+++|++|+
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~-l~-------~~~~~~l~~~~~L~~L~L~~~~~l~~~--~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLR-LS-------DPIVNTLAKNSNLVRLNLSGCSGFSEF--ALQTLLSSCSRLDELN 174 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCB-CC-------HHHHHHHTTCTTCSEEECTTCBSCCHH--HHHHHHHHCTTCCEEE
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcc-cC-------HHHHHHHhcCCCCCEEECCCCCCCCHH--HHHHHHhcCCCCCEEc
Confidence 8865 88888999999999999863 22 245556778888888888888 45432 2344566788888888
Q ss_pred ccCC-CCCCC-CcccccCCC-CCCEEEccCC--CCC-CcchhhhcCCCCCCEEeccCCC-CCCccchhccCCCCCCEEec
Q 046844 182 LSGC-DLSGP-INHYLAKSR-SLSVIRLHYN--YGL-SSGTEFLAHLTNLKALDLSECG-LQGKFPEKILHVPTLETLDL 254 (967)
Q Consensus 182 Ls~~-~l~~~-~~~~l~~l~-~L~~L~L~~n--~~~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L 254 (967)
+++| .+++. ++..+..++ +|++|++++| .+. ..++..+..+++|++|++++|. +++..+..+.++++|++|++
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 8888 77754 456677777 8888888887 444 4456666777888888888887 66666667777777777777
Q ss_pred cCCC-CCCCCCCCCCCCCCCCEEEccCC
Q 046844 255 SINQ-LLQGSLPNFPKNSSLRDLILSHT 281 (967)
Q Consensus 255 ~~n~-~~~~~~~~~~~l~~L~~L~L~~n 281 (967)
++|. +....+..+..+++|++|++++|
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7774 21111112333444444444444
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=7.3e-22 Score=205.94 Aligned_cols=196 Identities=18% Similarity=0.177 Sum_probs=139.4
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc-cCCCCcccccCCCCCCEEECCC-CccccccchhhhcCCCCCEE
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ-LQGVVPKSLANCNMLQVLDLRS-NYISDNFPCWLRNASSLQVL 696 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L 696 (967)
+|++|++++|+++ .+|...|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 7888888888887 4555447888888888888886 7777667788888888888887 88887777778888888888
Q ss_pred EccCCccceecCCCCCCCCCCCCc---EEecCCc-cCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEE
Q 046844 697 VLRSNNFSGHISCPRNKVSWPLLQ---IVDLACN-KFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVT 772 (967)
Q Consensus 697 ~L~~N~l~~~~~~p~~~~~l~~L~---~Ldls~N-~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (967)
++++|++++. |. +..+++|+ .|++++| ++++..+..+
T Consensus 111 ~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~----------------------------------- 151 (239)
T 2xwt_C 111 GIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF----------------------------------- 151 (239)
T ss_dssp EEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-----------------------------------
T ss_pred eCCCCCCccc---cc-cccccccccccEEECCCCcchhhcCcccc-----------------------------------
Confidence 8888888763 54 66666666 7777777 6653222111
Q ss_pred EccceeeecccCCcce-EEECCCCcccCCCcccccCCCCCcEEECCCCC-CcccCCccccCC-CCCCeEeCcCccccccC
Q 046844 773 VKGIEIKLLKVPNIFT-SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNA-LTGSIPSSFGNL-KEIESLDLSMNNLSGKI 849 (967)
Q Consensus 773 ~~~~~~~~~~~~~~l~-~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l-~~L~~LdLs~N~l~g~i 849 (967)
..++.++ .|++++|+++ .+|......++|+.|+|++|+ +++..|..|+++ ++|+.||+++|++++.
T Consensus 152 ---------~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l- 220 (239)
T 2xwt_C 152 ---------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL- 220 (239)
T ss_dssp ---------TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-
T ss_pred ---------cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-
Confidence 1355677 7777777777 455443333677888888884 776666777777 7888888888888753
Q ss_pred CccccCCCCCCeEEccCC
Q 046844 850 PAQLASLNFLSVLNLSYN 867 (967)
Q Consensus 850 p~~l~~l~~L~~l~ls~N 867 (967)
|.. .++.|+.|+++++
T Consensus 221 ~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 221 PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCT--TCTTCSEEECTTC
T ss_pred Chh--HhccCceeeccCc
Confidence 433 5667777777764
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.8e-22 Score=224.57 Aligned_cols=239 Identities=19% Similarity=0.220 Sum_probs=161.5
Q ss_pred eeecCCcccccCC----hhhhcCC-CCcEEEcccCcCCCCCCcccccC-----CCCCccEEECCCCcCcccCCCC---CC
Q 046844 573 FVAANNSLAGVIP----ESVCKAT-NFQVLDLSNNNLSGTIPACLITK-----SSSTLEVLNLGRNNLNGTLSDT---IF 639 (967)
Q Consensus 573 l~l~~n~l~~~~p----~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~~-----~~~~L~~L~Ls~N~l~~~ip~~---~~ 639 (967)
|++++|.+++..+ ..+..++ +|++|++++|++++..+..+... . +|++|+|++|.+++..+.. .+
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~--~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA--NVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT--TCCEEECCSSCGGGSCHHHHHHHH
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC--CccEEECcCCcCChHHHHHHHHHH
Confidence 4444444444433 4555666 78888888888876655555442 3 7888888888887544332 12
Q ss_pred CCC-CcccEEeCCCCccCCCCccccc----C-CCCCCEEECCCCcccccc----chhhhcCC-CCCEEEccCCccceecC
Q 046844 640 PGD-CGLQILDLSGNQLQGVVPKSLA----N-CNMLQVLDLRSNYISDNF----PCWLRNAS-SLQVLVLRSNNFSGHIS 708 (967)
Q Consensus 640 ~~l-~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~~L~Ls~N~l~~~~----p~~l~~l~-~L~~L~L~~N~l~~~~~ 708 (967)
... ++|++|+|++|++++..+..+. . +++|++|++++|++++.. +..+..++ +|++|+|++|++++..
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~- 183 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN- 183 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh-
Confidence 233 6788888888888876665543 3 468888888888888543 34445555 8888888888887643
Q ss_pred CCC----CCCCC-CCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeeccc
Q 046844 709 CPR----NKVSW-PLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKV 783 (967)
Q Consensus 709 ~p~----~~~~l-~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (967)
+. .+..+ ++|+.||+++|++++.....+...+ ...
T Consensus 184 -~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l---------------------------------------~~~ 223 (362)
T 3goz_A 184 -CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF---------------------------------------SSI 223 (362)
T ss_dssp -HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------HHS
T ss_pred -HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH---------------------------------------hcC
Confidence 32 23344 5888999999988764332221110 012
Q ss_pred CCcceEEECCCCcccCCCcc----cccCCCCCcEEECCCCCCccc-------CCccccCCCCCCeEeCcCccccccCCcc
Q 046844 784 PNIFTSIDFSSNNFEGPIPV----EMGRFRSLYALNMSHNALTGS-------IPSSFGNLKEIESLDLSMNNLSGKIPAQ 852 (967)
Q Consensus 784 ~~~l~~l~Ls~N~l~g~ip~----~~~~l~~L~~L~Ls~N~l~g~-------ip~~~~~l~~L~~LdLs~N~l~g~ip~~ 852 (967)
.+.|+.|||++|++++..+. .+..++.|++|+|++|.+++. ++..+.++++|+.||+++|++.+..|..
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 35788999999999887663 346778999999999996544 3446788899999999999998876655
Q ss_pred cc
Q 046844 853 LA 854 (967)
Q Consensus 853 l~ 854 (967)
+.
T Consensus 304 ~~ 305 (362)
T 3goz_A 304 IS 305 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3e-22 Score=220.83 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=175.8
Q ss_pred eeecCCcccccCChhhhcC--CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCccc-CCCCCCCCCCcccEEe
Q 046844 573 FVAANNSLAGVIPESVCKA--TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGT-LSDTIFPGDCGLQILD 649 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~-ip~~~~~~l~~L~~L~ 649 (967)
++++++.+. +..+..+ ++++.|++++|.+.+..+.. .... +|++|++++|.+++. +|.. +..+++|++|+
T Consensus 52 l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~--~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~ 124 (336)
T 2ast_B 52 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPF--RVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLS 124 (336)
T ss_dssp EECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCB--CCCEEECTTCEECHHHHHHH-HTTBCCCSEEE
T ss_pred eccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCC--CCCEEEccCCCcCHHHHHHH-HhhCCCCCEEe
Confidence 455555444 2344445 67888888888888665553 3333 888888888888755 5554 77788888888
Q ss_pred CCCCccCCCCcccccCCCCCCEEECCCC-ccccc-cchhhhcCCCCCEEEccCC-cccee-cCCCCCCCCCC-CCcEEec
Q 046844 650 LSGNQLQGVVPKSLANCNMLQVLDLRSN-YISDN-FPCWLRNASSLQVLVLRSN-NFSGH-ISCPRNKVSWP-LLQIVDL 724 (967)
Q Consensus 650 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~~~p~~~~~l~-~L~~Ldl 724 (967)
+++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. + +..+..++ +|+.|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNL 202 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEEC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEEEe
Confidence 8888888777788888888888888888 67763 6677888888888888888 77753 2 55566777 8888888
Q ss_pred CCc--cCc-CcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCc-ccCC
Q 046844 725 ACN--KFS-GRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNN-FEGP 800 (967)
Q Consensus 725 s~N--~l~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~-l~g~ 800 (967)
++| .++ +.+|..+ ..++.|+.|++++|. +++.
T Consensus 203 ~~~~~~~~~~~l~~~~--------------------------------------------~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLV--------------------------------------------RRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CSCGGGSCHHHHHHHH--------------------------------------------HHCTTCSEEECTTCTTCCGG
T ss_pred CCCcccCCHHHHHHHH--------------------------------------------hhCCCCCEEeCCCCCcCCHH
Confidence 888 444 2333211 135678888898888 7777
Q ss_pred CcccccCCCCCcEEECCCCC-CcccCCccccCCCCCCeEeCcCccccccCCccccCC-CCCCeEEccCCccccCCCCC
Q 046844 801 IPVEMGRFRSLYALNMSHNA-LTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGKIPTS 876 (967)
Q Consensus 801 ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~l~g~ip~~ 876 (967)
.+..++.+++|+.|+|++|. ++......++++++|+.|++++| ++.. .+..+ ..|..|++++|+++|..|..
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 88888888889999998885 33222235788888999999888 3322 23333 23666778888888888753
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.7e-20 Score=194.43 Aligned_cols=187 Identities=23% Similarity=0.243 Sum_probs=151.2
Q ss_pred eeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEEC
Q 046844 546 YVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNL 625 (967)
Q Consensus 546 ~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~L 625 (967)
+++++++.++.+|..+. ..++. |++++|.+.+..+..+..+++|++|++++|++++..|..+.... +|++|+|
T Consensus 18 ~l~~~~~~l~~~p~~~~---~~l~~--L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L 90 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP---ADTEK--LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLGL 90 (251)
T ss_dssp EEECTTCCCSSCCSCCC---TTCCE--EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEEC
T ss_pred EEecCCCCccccCCCCC---CCCCE--EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--cCCEEEC
Confidence 34444444444444332 22333 66667777776677788899999999999999977777777665 9999999
Q ss_pred CCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844 626 GRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705 (967)
Q Consensus 626 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 705 (967)
++|+++ .+|...|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|++++
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 999999 5555559999999999999999998888889999999999999999999888899999999999999999998
Q ss_pred ecCCCCCCCCCCCCcEEecCCccCcCc-CcHHHHHHHh
Q 046844 706 HISCPRNKVSWPLLQIVDLACNKFSGR-LSQKWLLTMM 742 (967)
Q Consensus 706 ~~~~p~~~~~l~~L~~Ldls~N~l~g~-~p~~~~~~~~ 742 (967)
.. +..+..+++|+.|++++|++++. +...++..++
T Consensus 170 ~~--~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 170 VP--HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp CC--TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred cC--HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 76 67889999999999999999998 4444443333
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=5e-21 Score=199.61 Aligned_cols=197 Identities=15% Similarity=0.175 Sum_probs=159.2
Q ss_pred CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCc-CcccCCCCCCCCCCcccEEeCCC-CccCCCCcccccCCCCC
Q 046844 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNN-LNGTLSDTIFPGDCGLQILDLSG-NQLQGVVPKSLANCNML 669 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L 669 (967)
++|++|++++|++++..+..+..+. +|++|++++|+ ++ .++...|.++++|++|++++ |++++..+..|.++++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLP--NISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCT--TCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECHHHccCCC--CCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 4788888888888855555666655 88888888887 76 56665588888999999998 89988777888899999
Q ss_pred CEEECCCCccccccchhhhcCCCCC---EEEccCC-ccceecCCCCCCCCCCCCc-EEecCCccCcCcCcHHHHHHHhhc
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQ---VLVLRSN-NFSGHISCPRNKVSWPLLQ-IVDLACNKFSGRLSQKWLLTMMVA 744 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~p~~~~~l~~L~-~Ldls~N~l~g~~p~~~~~~~~~~ 744 (967)
++|++++|++++ +|. |..+++|+ +|++++| ++++.. +..+..+++|+ .|++++|+++ .+|...+
T Consensus 108 ~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~------ 176 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFT-SVQGYAF------ 176 (239)
T ss_dssp CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCC-EECTTTT------
T ss_pred CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCc-ccCHhhc------
Confidence 999999999988 555 78888888 9999999 888775 66788899999 9999999887 5553211
Q ss_pred ccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCc-ccCCCcccccCC-CCCcEEECCCCCCc
Q 046844 745 ETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNN-FEGPIPVEMGRF-RSLYALNMSHNALT 822 (967)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~-l~g~ip~~~~~l-~~L~~L~Ls~N~l~ 822 (967)
..+.|+.|++++|+ +++..|..|+.+ ++|+.|||++|+++
T Consensus 177 --------------------------------------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 177 --------------------------------------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp --------------------------------------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred --------------------------------------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 12568999999995 987777889999 99999999999999
Q ss_pred ccCCccccCCCCCCeEeCcCc
Q 046844 823 GSIPSSFGNLKEIESLDLSMN 843 (967)
Q Consensus 823 g~ip~~~~~l~~L~~LdLs~N 843 (967)
+ +|.. .+++|+.|+++++
T Consensus 219 ~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 219 A-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp C-CCCT--TCTTCSEEECTTC
T ss_pred c-CChh--HhccCceeeccCc
Confidence 5 5554 6789999999876
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2e-20 Score=202.67 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=53.1
Q ss_pred CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEE
Q 046844 784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863 (967)
Q Consensus 784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ 863 (967)
++.|+.|++++|++++..| ++.+++|+.|+|++|++++..| +..+++|+.|||++|++++..| +..++.|+.|+
T Consensus 150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 223 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence 3445566666666654333 6667777777777777765433 6677777777777777776543 66677777777
Q ss_pred ccCCcccc
Q 046844 864 LSYNNLVG 871 (967)
Q Consensus 864 ls~N~l~g 871 (967)
+++|++++
T Consensus 224 l~~N~i~~ 231 (308)
T 1h6u_A 224 LTNQTITN 231 (308)
T ss_dssp EEEEEEEC
T ss_pred ccCCeeec
Confidence 77777765
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.2e-20 Score=204.44 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=166.3
Q ss_pred ecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc
Q 046844 575 AANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ 654 (967)
Q Consensus 575 l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 654 (967)
+..+.+.+.++ ...+++|+.|++++|.++ .+| .+..+. +|++|++++|.++ .++. +..+++|++|++++|+
T Consensus 26 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~--~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 26 AGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLN--NLIGLELKDNQIT-DLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp TTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCT--TCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCC
T ss_pred hCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccC--CCCEEEccCCcCC-CChh--HccCCCCCEEEccCCc
Confidence 34444444332 346778999999999987 466 455555 8999999999998 4544 7888999999999999
Q ss_pred cCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844 655 LQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS 734 (967)
Q Consensus 655 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p 734 (967)
+++. ..+..+++|++|++++|++++..+ +..+++|++|++++|++++.. + +..+++|+.|++++|++++..+
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--P--LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--G--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc--c--ccCCCCccEEEccCCcCCCChh
Confidence 9864 368889999999999999988543 888999999999999998764 2 7788999999999999875332
Q ss_pred HHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEE
Q 046844 735 QKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYAL 814 (967)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L 814 (967)
+ ..++.|+.|++++|++++..| +..+++|+.|
T Consensus 169 --l--------------------------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 169 --L--------------------------------------------ANLSKLTTLKADDNKISDISP--LASLPNLIEV 200 (308)
T ss_dssp --G--------------------------------------------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred --h--------------------------------------------cCCCCCCEEECCCCccCcChh--hcCCCCCCEE
Confidence 1 246779999999999987654 8899999999
Q ss_pred ECCCCCCcccCCccccCCCCCCeEeCcCcccccc
Q 046844 815 NMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGK 848 (967)
Q Consensus 815 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ 848 (967)
+|++|++++..| +..+++|+.|+|++|.+++.
T Consensus 201 ~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred EccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 999999997654 89999999999999999863
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.2e-20 Score=213.66 Aligned_cols=191 Identities=25% Similarity=0.358 Sum_probs=151.9
Q ss_pred CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCC
Q 046844 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQ 670 (967)
Q Consensus 591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 670 (967)
..+++.|++++|++++ +|..+. . +|+.|+|++|+++ .+| . .+++|++|+|++|+|++ +|. +.. +|+
T Consensus 58 ~~~L~~L~Ls~n~L~~-lp~~l~--~--~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS-LPDNLP--P--QITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp HTTCSEEECCSSCCSC-CCSCCC--T--TCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred cCCccEEEeCCCCCCc-cCHhHc--C--CCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence 3489999999999985 887653 3 8999999999998 788 3 35789999999999997 666 655 899
Q ss_pred EEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCc
Q 046844 671 VLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGS 750 (967)
Q Consensus 671 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~ 750 (967)
.|++++|+|++ +|. .+++|+.|+|++|++++. |. .+++|+.|++++|++++ +|. +
T Consensus 124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l---p~---~l~~L~~L~Ls~N~L~~-lp~-l------------- 178 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLTML---PE---LPTSLEVLSVRNNQLTF-LPE-L------------- 178 (571)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSC-CCC-C-------------
T ss_pred EEECCCCcCCC-CCC---cCccccEEeCCCCccCcC---CC---cCCCcCEEECCCCCCCC-cch-h-------------
Confidence 99999999998 554 688999999999999874 54 56888999999998876 552 1
Q ss_pred ccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC-------cEEECCCCCCcc
Q 046844 751 EVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL-------YALNMSHNALTG 823 (967)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L-------~~L~Ls~N~l~g 823 (967)
.+.|+.|||++|+++ .+|. |.. +| +.|+|++|+|+
T Consensus 179 ---------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 179 ---------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp ---------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred ---------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence 146788888888888 6676 655 67 88888888888
Q ss_pred cCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844 824 SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF 858 (967)
Q Consensus 824 ~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 858 (967)
.||..+..+++|+.|||++|.|+|.+|..+..++.
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 58888888888888888888888888888777543
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=9.8e-22 Score=220.98 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=108.5
Q ss_pred CCCccccCCCCCCEEeCCCCCCCccCCh----hccCCCCCCEEeCCCCC--CCccccccccccHHHHhcCCCCCCEEEcC
Q 046844 83 QIPSRLGNLTNLTYLNLSQGGFAGEIPT----EISSLTRLVTLDLSGIV--PIEYSYTVWIANLSLFLQNLTELTELHLD 156 (967)
Q Consensus 83 ~lp~~l~~l~~L~~L~Ls~~~~~~~lp~----~l~~l~~L~~L~Ls~~~--~l~~~~~~~~~~l~~~l~~l~~L~~L~l~ 156 (967)
.++..+..+++|++|+|++|.+.+..+. .+.++++|++|++++|. .+..........+...+.++++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3566677777888888888877755333 35567777777777652 11100011112222223444444444444
Q ss_pred CccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhc----CC---------C
Q 046844 157 RVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLA----HL---------T 223 (967)
Q Consensus 157 ~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~----~l---------~ 223 (967)
+|.+...+.. .++..+..+++|++|+|++|.+....+..+. .+ +
T Consensus 103 ~n~l~~~~~~-----------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 103 DNAFGPTAQE-----------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159 (386)
T ss_dssp SCCCCTTTHH-----------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcCCHHHHH-----------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC
Confidence 4444332211 1333444444445555544444332222222 22 5
Q ss_pred CCCEEeccCCCCC-Cccc---hhccCCCCCCEEeccCCCCCCCC----CC-CCCCCCCCCEEEccCCCCC----CCcccc
Q 046844 224 NLKALDLSECGLQ-GKFP---EKILHVPTLETLDLSINQLLQGS----LP-NFPKNSSLRDLILSHTGLS----GTLPDS 290 (967)
Q Consensus 224 ~L~~L~Ls~n~l~-~~~~---~~l~~l~~L~~L~L~~n~~~~~~----~~-~~~~l~~L~~L~L~~n~l~----~~~~~~ 290 (967)
+|++|++++|.++ +.++ ..+..+++|++|++++|.+.... .+ .+..+++|++|++++|.++ ..+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 5555555555554 2222 23445555555555555442110 11 2333444555555555543 334555
Q ss_pred ccCCCCCCEEEccCCCCCCC----CCccc--cCCCCCcEEEccCccccc
Q 046844 291 IGNLENLTRVEVSSCNFTGP----IPPSM--ANLTQLFHMDFSSNHFFG 333 (967)
Q Consensus 291 l~~l~~L~~L~Ls~n~l~~~----~~~~l--~~l~~L~~L~L~~n~l~~ 333 (967)
+..+++|++|+|++|.+++. ++..+ +.+++|++|++++|.+++
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 55566666666666655533 23333 224555555555555544
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.7e-20 Score=214.93 Aligned_cols=130 Identities=27% Similarity=0.452 Sum_probs=61.4
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~ 652 (967)
|++++|.+++ +|..+. ++|++|++++|+|+ .+| .+ .. +|++|+|++|++++ +|. |.. +|++|+|++
T Consensus 64 L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip-~~--l~--~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 64 LQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP-EL--PA--SLEYLDACDNRLST-LPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp EECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC-CC--CT--TCCEEECCSSCCSC-CCC--CCT--TCCEEECCS
T ss_pred EEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc-cc--cC--CCCEEEccCCCCCC-cch--hhc--CCCEEECCC
Confidence 5555555544 343332 44555555555554 444 11 11 45555555555553 444 222 455555555
Q ss_pred CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730 (967)
Q Consensus 653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~ 730 (967)
|+|++ +|. .+++|+.|++++|+|++ +|. .+++|++|+|++|++++. |. +. ++|+.|||++|+++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l---p~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL---PE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC-CC--TTCCEEECCSSCCS
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc---ch-hh--CCCCEEECcCCCCC
Confidence 55554 333 34555555555555554 232 344555555555555542 33 32 45555555555554
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=199.89 Aligned_cols=225 Identities=20% Similarity=0.175 Sum_probs=151.7
Q ss_pred CCEEEcCCccCCCcchhHHHHhcCCCCccEEEccCCCCCCCCcccc--cCCCCCCEEEccCCCCCCcch----hhhcCCC
Q 046844 150 LTELHLDRVDLSASGTEWCKALSFLPNLQVLSLSGCDLSGPINHYL--AKSRSLSVIRLHYNYGLSSGT----EFLAHLT 223 (967)
Q Consensus 150 L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l--~~l~~L~~L~L~~n~~~~~~~----~~l~~l~ 223 (967)
++.+.+.++.+.............+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 3444444444433222212223345679999999999988888777 889999999999999887543 3456789
Q ss_pred CCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCC---CCCC-CCCCCCCCCEEEccCCCCCCCccc----cccCCC
Q 046844 224 NLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQ---GSLP-NFPKNSSLRDLILSHTGLSGTLPD----SIGNLE 295 (967)
Q Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~---~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~ 295 (967)
+|++|++++|.+.+..+..+..+++|++|++++|++.. .... .+..+++|++|++++|+++. ++. .++.++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC
Confidence 99999999999988888889999999999999998643 1112 23567888888998888863 333 246778
Q ss_pred CCCEEEccCCCCCCCCCccccCC---CCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEE
Q 046844 296 NLTRVEVSSCNFTGPIPPSMANL---TQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIV 372 (967)
Q Consensus 296 ~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 372 (967)
+|++|++++|++++..|..+..+ ++|++|++++|+++ .+|.... ++|++|++++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~-~~--~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRA-PQ--PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSC-CC--TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCC-ch--hhhCCCccEE
Confidence 88888888888887767666665 57777777777776 3333222 4566666666655532 21 2334444444
Q ss_pred EcCCCcCC
Q 046844 373 VLGHNSLS 380 (967)
Q Consensus 373 ~L~~n~l~ 380 (967)
++++|.++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 44444443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1e-19 Score=201.12 Aligned_cols=222 Identities=17% Similarity=0.123 Sum_probs=139.9
Q ss_pred CCCcEEEcccCcCCCCCC-cccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccE-EeCCCCccCCCCcccccCCCCC
Q 046844 592 TNFQVLDLSNNNLSGTIP-ACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQI-LDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L 669 (967)
+++++|+|++|+|+ .+| ..|..+. +|++|+|++|++.+.+|..+|.+++++++ +.+++|+++...|..|..+++|
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~--~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCT--TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCC--CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 35667777777776 344 3455444 67777777777666666666777766654 5556677777777777777777
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEEccC-CccceecCCCCCCCCCC-CCcEEecCCccCcCcCcHHHHHHHhhcccC
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRS-NNFSGHISCPRNKVSWP-LLQIVDLACNKFSGRLSQKWLLTMMVAETK 747 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~p~~~~~l~-~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~ 747 (967)
++|++++|++++..+..+....++..|++.+ |++.... +..+..+. .++.|++++|+++. +|...+
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f--------- 174 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKNGIQE-IHNSAF--------- 174 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSSCCCE-ECTTSS---------
T ss_pred ccccccccccccCCchhhcccchhhhhhhcccccccccc--ccchhhcchhhhhhccccccccC-CChhhc---------
Confidence 7777777777776666666666777777755 4555443 34445443 56777777777753 221110
Q ss_pred CCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCc-ccccCCCCCcEEECCCCCCcccCC
Q 046844 748 SGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIP-VEMGRFRSLYALNMSHNALTGSIP 826 (967)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip 826 (967)
....++.+++++|+..+.|| ..|+.+++|++||||+|+|+...+
T Consensus 175 -----------------------------------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 175 -----------------------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp -----------------------------------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred -----------------------------------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 12346777887544444555 457888888888888888885433
Q ss_pred ccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCC
Q 046844 827 SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 867 (967)
Q Consensus 827 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N 867 (967)
..|. +|+.|...++.--..+| .+.++++|+.++++++
T Consensus 220 ~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 220 YGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp SSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 3444 44444444433334566 3777888888888765
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=6.4e-20 Score=186.69 Aligned_cols=133 Identities=25% Similarity=0.234 Sum_probs=60.8
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
+|++|++++|++++..+..+.... +|++|++++|+++ .+|...|..+++|++|++++|++++..+..|..+++|++|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELT--SLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCccCcCChhhhcccc--cCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 444555555555432222233322 4555555555544 3333334444555555555555554444444455555555
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCc
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFS 730 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~ 730 (967)
++++|++++..+..|.++++|++|++++|++++.. +..+..+++|+.|++++|++.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeC--HHHhccCCCccEEEecCCCee
Confidence 55555555444444444555555555555544432 223344444444444444433
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-19 Score=185.03 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=48.2
Q ss_pred EEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCc
Q 046844 789 SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 868 (967)
Q Consensus 789 ~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~ 868 (967)
.|++++|++++..|..|+.+++|++|+|++|++++..+..|+.+++|+.|++++|.+.+.. +.|++|+++.|+
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~ 176 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINK 176 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHh
Confidence 3333333444344444566666666666666666655555666666777777776665433 356666677777
Q ss_pred cccCCCCC
Q 046844 869 LVGKIPTS 876 (967)
Q Consensus 869 l~g~ip~~ 876 (967)
++|.||..
T Consensus 177 ~~g~ip~~ 184 (208)
T 2o6s_A 177 HSGVVRNS 184 (208)
T ss_dssp CTTTBBCT
T ss_pred CCceeecc
Confidence 77777643
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.7e-19 Score=197.71 Aligned_cols=239 Identities=18% Similarity=0.179 Sum_probs=181.5
Q ss_pred hhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCc-ccccC
Q 046844 587 SVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVP-KSLAN 665 (967)
Q Consensus 587 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~ 665 (967)
.+|.|.. ++++.++++++ .+|..+. +++++|+|++|+|+ .||..+|.++++|++|+|++|++.+.+| .+|.+
T Consensus 5 ~~C~C~~-~~v~C~~~~Lt-~iP~~l~----~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 5 RICHCSN-RVFLCQESKVT-EIPSDLP----RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp SSSEEET-TEEEEESTTCC-SCCTTCC----TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred CccEeeC-CEEEecCCCCC-ccCcCcC----CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 3455543 57889999998 7888762 38999999999999 7888779999999999999999976555 57899
Q ss_pred CCCCCE-EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhc
Q 046844 666 CNMLQV-LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVA 744 (967)
Q Consensus 666 l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~ 744 (967)
+++|+. +++++|+++.+.|..|.++++|++|++++|++++.. +..+....++..+++.++.-...+|...
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~l~~l~l~~~~~i~~l~~~~------- 148 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNS------- 148 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC--CCTTCCBSSCEEEEEESCTTCCEECTTS-------
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCC--chhhcccchhhhhhhccccccccccccc-------
Confidence 988775 677889999999999999999999999999998775 5566677788899997754333333211
Q ss_pred ccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc
Q 046844 745 ETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS 824 (967)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ 824 (967)
+......++.|+|++|+++. ||.......+|+.|++++|+.-+.
T Consensus 149 -----------------------------------f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 149 -----------------------------------FVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp -----------------------------------STTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCC
T ss_pred -----------------------------------hhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccC
Confidence 01123457889999999985 565566677899999986444445
Q ss_pred CC-ccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCccccCCCCCCcCC
Q 046844 825 IP-SSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ 880 (967)
Q Consensus 825 ip-~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~ 880 (967)
|| ..|+++++|+.||||+|+|+...+..+ ..|+.|.+.+++--..+|.-..+.
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~ 246 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLV 246 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCC
T ss_pred CCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCc
Confidence 66 568999999999999999996655444 455666665555445677543333
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=174.41 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=126.6
Q ss_pred CCcEEEcccCcCCCCCCc-ccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844 593 NFQVLDLSNNNLSGTIPA-CLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~-~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 671 (967)
.+++|++++|++++..|. .+.... +|++|+|++|++++ ++...|.++++|++|+|++|++++..+..|..+++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLP--QLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCT--TCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCEEEcCCCcCCccCchhhhccCC--CCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 457888888888865443 355555 89999999999984 44444999999999999999999998889999999999
Q ss_pred EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV 743 (967)
Q Consensus 672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 743 (967)
|+|++|+|++..|..|.++++|++|+|++|++++.. |..+..+++|+.|++++|+++|.++..++..++.
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 999999999999999999999999999999999987 8899999999999999999999999888755443
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=174.02 Aligned_cols=86 Identities=27% Similarity=0.246 Sum_probs=62.7
Q ss_pred EEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCc
Q 046844 789 SIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 868 (967)
Q Consensus 789 ~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~ 868 (967)
.|+|++|++++..|..|+.+++|++|+|++|++++.+|..|+.+++|+.|||++|++++.+|..+..++.|+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 33444444444555567777777888888888887777777788888888888888887777778888888888888888
Q ss_pred cccCCC
Q 046844 869 LVGKIP 874 (967)
Q Consensus 869 l~g~ip 874 (967)
+++..+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 877665
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.1e-18 Score=185.03 Aligned_cols=188 Identities=22% Similarity=0.305 Sum_probs=108.3
Q ss_pred cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL 674 (967)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 674 (967)
..+.+..+.+++..+. ..+. +|+.|++++|.+. .++. +..+++|++|++++|++++..+ +..+++|++|++
T Consensus 27 ~~~~l~~~~~~~~~~~--~~l~--~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVTQ--NELN--SIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHTTCSCTTSEECH--HHHH--TCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHhcCCCcccccch--hhcC--cccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 3344555555432222 1222 5666666666665 3432 5555666666666666665433 556666666666
Q ss_pred CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccc
Q 046844 675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNH 754 (967)
Q Consensus 675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~ 754 (967)
++|++++. | .+..+++|++|++++|++++. ..+..+
T Consensus 98 ~~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~----~~l~~l-------------------------------------- 133 (291)
T 1h6t_A 98 DENKVKDL-S-SLKDLKKLKSLSLEHNGISDI----NGLVHL-------------------------------------- 133 (291)
T ss_dssp CSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC----GGGGGC--------------------------------------
T ss_pred CCCcCCCC-h-hhccCCCCCEEECCCCcCCCC----hhhcCC--------------------------------------
Confidence 66666552 2 255555555555555555432 123333
Q ss_pred ccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCC
Q 046844 755 LGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKE 834 (967)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 834 (967)
+.|+.|++++|++++. ..++.+++|+.|+|++|++++..| ++.+++
T Consensus 134 ------------------------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 134 ------------------------------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp ------------------------------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred ------------------------------CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 4455556666665544 346666777777777777765444 667777
Q ss_pred CCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844 835 IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871 (967)
Q Consensus 835 L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 871 (967)
|+.|++++|++++. | .+..++.|+.|++++|+++.
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777777777653 3 36667777777777777655
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=8.1e-18 Score=172.25 Aligned_cols=146 Identities=22% Similarity=0.253 Sum_probs=122.0
Q ss_pred CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 671 (967)
++++.|++++|++++..+..+.... +|++|+|++|++++..|.. |.++++|++|+|++|+|+...+..|..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCT--TCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCC--CCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 4678888888888755555665555 8888888888888555665 888899999999999999777777888999999
Q ss_pred EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742 (967)
Q Consensus 672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~ 742 (967)
|+|++|++++..|..|.++++|++|+|++|++++.. +..+..+++|+.|++++|++.+.+...|+..++
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l 177 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL 177 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH
Confidence 999999999988889999999999999999998876 667888999999999999999999888875544
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.5e-18 Score=188.69 Aligned_cols=178 Identities=25% Similarity=0.242 Sum_probs=126.4
Q ss_pred cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCC-CCCcccEEeCCCCccCCCCcccccCCCCCCEEE
Q 046844 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFP-GDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD 673 (967)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 673 (967)
+.+++++++++ .+|..+. ..++.|+|++|++++ ++...|. .+++|++|+|++|+|++..+..|.++++|+.|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~----~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP----SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC----TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcC-ccCccCC----CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 57888888887 5776542 267888888888874 4444366 777888888888888877777778888888888
Q ss_pred CCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccc
Q 046844 674 LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVN 753 (967)
Q Consensus 674 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~ 753 (967)
|++|+|++..+..|.++++|++|+|++|++++.. |..+..+++|+.|+|++|+++
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~----------------------- 149 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQIS----------------------- 149 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCC-----------------------
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC--HHHhCCcccCCEEECCCCcCC-----------------------
Confidence 8888887777777777777777777777777665 556666666666666555554
Q ss_pred cccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccc---cCCCCCcEEECCCCCCcccCCcccc
Q 046844 754 HLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEM---GRFRSLYALNMSHNALTGSIPSSFG 830 (967)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~---~~l~~L~~L~Ls~N~l~g~ip~~~~ 830 (967)
+..+..| +.+++|+.|||++|+|++..+..+.
T Consensus 150 ---------------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 184 (361)
T 2xot_A 150 ---------------------------------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184 (361)
T ss_dssp ---------------------------------------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred ---------------------------------------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence 2222222 5678888899999998876667777
Q ss_pred CCCC--CCeEeCcCcccccc
Q 046844 831 NLKE--IESLDLSMNNLSGK 848 (967)
Q Consensus 831 ~l~~--L~~LdLs~N~l~g~ 848 (967)
.++. ++.|+|++|.+...
T Consensus 185 ~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp HSCHHHHTTEECCSSCEECC
T ss_pred hccHhhcceEEecCCCccCC
Confidence 7776 47888888888753
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.6e-17 Score=170.03 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=50.1
Q ss_pred cEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844 621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700 (967)
Q Consensus 621 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 700 (967)
+.++++++.++ .+|.. +. ++|++|++++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 46777777776 66655 22 4566666666666666555666666666666666666665565665555555555555
Q ss_pred Cccc
Q 046844 701 NNFS 704 (967)
Q Consensus 701 N~l~ 704 (967)
|+++
T Consensus 90 N~l~ 93 (220)
T 2v9t_B 90 NKIT 93 (220)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5554
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.9e-18 Score=200.42 Aligned_cols=192 Identities=20% Similarity=0.282 Sum_probs=137.5
Q ss_pred CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 671 (967)
..+..+.++.+.+.+.++. ..+. +|+.|++++|.+. .+|. |..+++|+.|+|++|++++..| +..+++|+.
T Consensus 21 ~~l~~l~l~~~~i~~~~~~--~~L~--~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQ--NELN--SIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHTTCSCTTSEECH--HHHT--TCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHHhccCCCcccccch--hcCC--CCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 3455667777777644432 2333 7888888888887 5553 7778888888888888886655 778888888
Q ss_pred EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcc
Q 046844 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSE 751 (967)
Q Consensus 672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~ 751 (967)
|+|++|++++. | .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++. + .
T Consensus 92 L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l-~-~--------------- 148 (605)
T 1m9s_A 92 LFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-T-V--------------- 148 (605)
T ss_dssp EECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC-G-G---------------
T ss_pred EECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc-h-h---------------
Confidence 88888888763 3 577788888888888888763 3467777888888888877653 1 0
Q ss_pred cccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccC
Q 046844 752 VNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGN 831 (967)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 831 (967)
...++.|+.|+|++|++++.+| ++.+++|+.|+|++|++++. | .++.
T Consensus 149 -----------------------------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~ 195 (605)
T 1m9s_A 149 -----------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAG 195 (605)
T ss_dssp -----------------------------GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTT
T ss_pred -----------------------------hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHcc
Confidence 1135667777788777777666 77777777888888777763 3 4777
Q ss_pred CCCCCeEeCcCcccccc
Q 046844 832 LKEIESLDLSMNNLSGK 848 (967)
Q Consensus 832 l~~L~~LdLs~N~l~g~ 848 (967)
+++|+.|+|++|.+++.
T Consensus 196 l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 196 LKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCSEEECCSEEEECC
T ss_pred CCCCCEEEccCCcCcCC
Confidence 77777888887777765
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.3e-17 Score=170.16 Aligned_cols=80 Identities=23% Similarity=0.240 Sum_probs=43.2
Q ss_pred cEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844 621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700 (967)
Q Consensus 621 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 700 (967)
+.++.+++.+. .+|.. +. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 22 ~~v~c~~~~l~-~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAG-IP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCC-CC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 44555555554 55544 21 4555666666666555555555666666666666666554444455555555554444
Q ss_pred Cccc
Q 046844 701 NNFS 704 (967)
Q Consensus 701 N~l~ 704 (967)
|+++
T Consensus 98 N~l~ 101 (229)
T 3e6j_A 98 NQLT 101 (229)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 4444
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=7.9e-18 Score=186.74 Aligned_cols=127 Identities=30% Similarity=0.296 Sum_probs=68.1
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccc-cCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCC
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLI-TKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLS 651 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 651 (967)
++.+++.++. +|..+. ..++.|+|++|++++..+..+. ... +|+.|+|++|++++ ++...|..+++|++|+|+
T Consensus 23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~--~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT--NLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT--TCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhccc--ccCEEECCCCcCCc-cChhhccCCCCCCEEECC
Confidence 5555555543 333322 2355566666665543333332 332 56666666666653 332225555566666666
Q ss_pred CCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705 (967)
Q Consensus 652 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 705 (967)
+|+|++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|++|++++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 666655555555556666666666666655555555556666666666665554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=5e-17 Score=167.58 Aligned_cols=137 Identities=24% Similarity=0.248 Sum_probs=121.4
Q ss_pred CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 671 (967)
++|++|++++|++++..|..+.... +|++|+|++|++. .+|...|..+++|++|+|++|+|++..+..|..+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLI--NLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCcc--CCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 6788999999999877777777665 8999999999997 677666899999999999999999888888999999999
Q ss_pred EECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS 734 (967)
Q Consensus 672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p 734 (967)
|++++|+|+. +|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|+++|.++
T Consensus 117 L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 117 LFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred EeccCCcccc-cCcccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999999994 7888899999999999999999775 5678899999999999999999987
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=8.3e-18 Score=180.28 Aligned_cols=188 Identities=19% Similarity=0.249 Sum_probs=147.8
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~ 652 (967)
+.+..+.+.+..+ +..+++|+.|++++|.+. .++. +..+. +|++|++++|++++ ++. +..+++|++|++++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~~-~~~l~--~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLP--NVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCTT-GGGCT--TCCEEECCSSCCCC-CGG--GTTCTTCCEEECCS
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcc-cChh-HhcCC--CCCEEEccCCccCC-Ccc--cccCCCCCEEECCC
Confidence 4556666665443 456889999999999998 4554 55555 99999999999995 443 78899999999999
Q ss_pred CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR 732 (967)
Q Consensus 653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~ 732 (967)
|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++. ..+..+
T Consensus 100 n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~~l---------------- 155 (291)
T 1h6t_A 100 NKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRL---------------- 155 (291)
T ss_dssp SCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGGGC----------------
T ss_pred CcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhccC----------------
Confidence 999873 3499999999999999999985 4688999999999999998753 233333
Q ss_pred CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844 733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY 812 (967)
Q Consensus 733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~ 812 (967)
+.|+.|++++|++++..| ++.+++|+
T Consensus 156 ----------------------------------------------------~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 156 ----------------------------------------------------TKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp ----------------------------------------------------TTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ----------------------------------------------------CCCCEEEccCCccccchh--hcCCCccC
Confidence 345556666666665544 78888899
Q ss_pred EEECCCCCCcccCCccccCCCCCCeEeCcCccccccC
Q 046844 813 ALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKI 849 (967)
Q Consensus 813 ~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i 849 (967)
.|+|++|++++ +|. +..+++|+.||+++|.++...
T Consensus 182 ~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 182 NLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp EEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred EEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCCc
Confidence 99999999986 454 888999999999999988643
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=6.3e-18 Score=198.63 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=173.6
Q ss_pred eeecCCcccccCChhhhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCC
Q 046844 573 FVAANNSLAGVIPESVCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSG 652 (967)
Q Consensus 573 l~l~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~ 652 (967)
+.+..+.+....+ +..+++|+.|++++|.+. .+| .+..+. +|+.|+|++|.+++..| +..+++|+.|+|++
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~--~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLP--NVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCT--TCCEEECTTSCCCCCGG---GGGCTTCCEEECCS
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCC--CCCEEEeeCCCCCCChh---hccCCCCCEEECcC
Confidence 5666777766554 467889999999999997 455 366655 99999999999985443 78899999999999
Q ss_pred CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCc
Q 046844 653 NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGR 732 (967)
Q Consensus 653 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~ 732 (967)
|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++.
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCc
Confidence 999863 3689999999999999999984 4588999999999999999874 4678899999999999999876
Q ss_pred CcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCc
Q 046844 733 LSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLY 812 (967)
Q Consensus 733 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~ 812 (967)
.| + ..++.|+.|+|++|++++. | .++.+++|+
T Consensus 169 ~~--l--------------------------------------------~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~ 200 (605)
T 1m9s_A 169 VP--L--------------------------------------------AGLTKLQNLYLSKNHISDL-R-ALAGLKNLD 200 (605)
T ss_dssp GG--G--------------------------------------------TTCTTCCEEECCSSCCCBC-G-GGTTCTTCS
T ss_pred hh--h--------------------------------------------ccCCCCCEEECcCCCCCCC-h-HHccCCCCC
Confidence 55 1 1467899999999999975 4 599999999
Q ss_pred EEECCCCCCcccCCcccc-------------CCCCCCeEeCcCccccccCCccccCCCC
Q 046844 813 ALNMSHNALTGSIPSSFG-------------NLKEIESLDLSMNNLSGKIPAQLASLNF 858 (967)
Q Consensus 813 ~L~Ls~N~l~g~ip~~~~-------------~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 858 (967)
.|+|++|.+++.....+. .....+.+...++...|.+|..+..+..
T Consensus 201 ~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~ 259 (605)
T 1m9s_A 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259 (605)
T ss_dssp EEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCCS
T ss_pred EEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCcceeccccccc
Confidence 999999999876333222 2333445555556666666666655543
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.1e-16 Score=159.97 Aligned_cols=141 Identities=26% Similarity=0.306 Sum_probs=127.1
Q ss_pred cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL 674 (967)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 674 (967)
+.+++++|.++ .+|..+.. +|++|++++|++++..+...|..+++|++|+|++|+|++..|..|.++++|++|+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 78999999996 78876532 89999999999986555555889999999999999999999999999999999999
Q ss_pred CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHh
Q 046844 675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMM 742 (967)
Q Consensus 675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~ 742 (967)
++|+|++..|..|.++++|++|+|++|++++.. |..+..+++|+.|++++|+++|.++..++..++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l 151 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCcchHHHHHH
Confidence 999999999999999999999999999999988 889999999999999999999999987775443
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.8e-19 Score=210.57 Aligned_cols=89 Identities=29% Similarity=0.351 Sum_probs=61.5
Q ss_pred CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccC-CccccCCCCCCeE
Q 046844 784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKI-PAQLASLNFLSVL 862 (967)
Q Consensus 784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~l 862 (967)
++.|+.|+|++|+++ .+|..|+.+++|+.|+|++|+|++ +| .|+++++|+.|||++|+|++.+ |..+..++.|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 445666666666666 666677777777777777777775 56 6777777777777777777666 7777777777777
Q ss_pred EccCCccccCCCC
Q 046844 863 NLSYNNLVGKIPT 875 (967)
Q Consensus 863 ~ls~N~l~g~ip~ 875 (967)
++++|+++|.+|.
T Consensus 539 ~L~~N~l~~~~~~ 551 (567)
T 1dce_A 539 NLQGNSLCQEEGI 551 (567)
T ss_dssp ECTTSGGGGSSSC
T ss_pred EecCCcCCCCccH
Confidence 7777777766653
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=5.8e-19 Score=206.27 Aligned_cols=193 Identities=18% Similarity=0.170 Sum_probs=161.2
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCc-------------cCCCCcccccCCCCCCEEE-CCCCccccccc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQ-------------LQGVVPKSLANCNMLQVLD-LRSNYISDNFP 684 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~p 684 (967)
+|+.|+|++|.++ .+|.. ++.+++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+.....
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 8999999999998 88988 8889999999998875 5677888899999999999 77776543221
Q ss_pred hh-----hhc--CCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccc
Q 046844 685 CW-----LRN--ASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGI 757 (967)
Q Consensus 685 ~~-----l~~--l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 757 (967)
.. +.. ...|+.|+|++|++++. |. +..+++|+.|+|++|+++ .+|..+
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l---p~-~~~l~~L~~L~Ls~N~l~-~lp~~~-------------------- 482 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVL---CH-LEQLLLVTHLDLSHNRLR-ALPPAL-------------------- 482 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSC---CC-GGGGTTCCEEECCSSCCC-CCCGGG--------------------
T ss_pred hhhhcccccccCccCceEEEecCCCCCCC---cC-ccccccCcEeecCccccc-ccchhh--------------------
Confidence 11 111 23699999999999984 66 899999999999999998 677433
Q ss_pred cCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccC-CccccCCCCCC
Q 046844 758 EMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSI-PSSFGNLKEIE 836 (967)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~~~~l~~L~ 836 (967)
..++.|+.|+|++|++++ +| .++.+++|+.|+|++|+|++.+ |..|+.+++|+
T Consensus 483 ------------------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 483 ------------------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp ------------------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ------------------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 257789999999999997 78 8999999999999999999987 99999999999
Q ss_pred eEeCcCccccccCCcc---ccCCCCCCeEEc
Q 046844 837 SLDLSMNNLSGKIPAQ---LASLNFLSVLNL 864 (967)
Q Consensus 837 ~LdLs~N~l~g~ip~~---l~~l~~L~~l~l 864 (967)
.|||++|.+++.+|.. +..++.|++||+
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999987643 345889999875
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.9e-17 Score=173.13 Aligned_cols=168 Identities=21% Similarity=0.304 Sum_probs=97.2
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 698 (967)
.+..+++++|.++ .++ . +..+++|++|++++|+++.. | .+..+++|+.|++++|++++..+ +.++++|+.|++
T Consensus 20 ~l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 4555566666665 233 1 45555666666666666532 3 45556666666666666665443 555666666666
Q ss_pred cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778 (967)
Q Consensus 699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (967)
++|++++. |... . ++
T Consensus 93 ~~N~l~~l---~~~~-~-~~------------------------------------------------------------ 107 (263)
T 1xeu_A 93 NRNRLKNL---NGIP-S-AC------------------------------------------------------------ 107 (263)
T ss_dssp CSSCCSCC---TTCC-C-SS------------------------------------------------------------
T ss_pred CCCccCCc---Cccc-c-Cc------------------------------------------------------------
Confidence 66655543 1111 1 34
Q ss_pred eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCC
Q 046844 779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNF 858 (967)
Q Consensus 779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 858 (967)
|+.|++++|++++. | .++.+++|+.|+|++|++++. | .++.+++|+.|||++|++++. ..+..++.
T Consensus 108 --------L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~ 173 (263)
T 1xeu_A 108 --------LSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173 (263)
T ss_dssp --------CCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCC
T ss_pred --------ccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCC
Confidence 45555555555542 2 366666666777777766653 3 466666777777777776665 45666666
Q ss_pred CCeEEccCCccccC
Q 046844 859 LSVLNLSYNNLVGK 872 (967)
Q Consensus 859 L~~l~ls~N~l~g~ 872 (967)
|+.|++++|.+++.
T Consensus 174 L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 174 VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEEEEEEEEECC
T ss_pred CCEEeCCCCcccCC
Confidence 77777777766654
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.8e-17 Score=200.10 Aligned_cols=192 Identities=20% Similarity=0.176 Sum_probs=113.4
Q ss_pred EEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCC
Q 046844 597 LDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRS 676 (967)
Q Consensus 597 L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 676 (967)
++++.|.+. ..|..+.... .|+.|+|++|.+. .+|.. +..+++|++|+|++|+|+ .+|..|..+++|++|||++
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~--~L~~L~Ls~n~l~-~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQ--LWHALDLSNLQIF-NISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp -----------------CCC--CCCEEECTTSCCS-CCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred cccccccee-cChhhhccCC--CCcEEECCCCCCC-CCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 344455554 4455555554 7888888888887 77776 337788899999999988 7788889999999999999
Q ss_pred CccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCccccccc
Q 046844 677 NYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLG 756 (967)
Q Consensus 677 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 756 (967)
|+|+ .+|..|+++++|++|+|++|.|+. + |..+..+++|+.|+|++|+++|.+|..+.....
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-l--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-------------- 341 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVTT-L--PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV-------------- 341 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCCC-C--CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH--------------
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCCc-c--ChhhhcCCCccEEeCCCCccCCCChHHHhhcch--------------
Confidence 9998 568889999999999999999873 3 888999999999999999999988876531100
Q ss_pred ccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCC--------CCcccCCcc
Q 046844 757 IEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHN--------ALTGSIPSS 828 (967)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N--------~l~g~ip~~ 828 (967)
....++|++|.++|.+|.++ +.|++++| .+++.++..
T Consensus 342 -----------------------------~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~ 386 (727)
T 4b8c_D 342 -----------------------------TGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHL 386 (727)
T ss_dssp -----------------------------HHHHHHHHHCCCCCCCCCC--------------------------------
T ss_pred -----------------------------hhhHHhhccCcccCcCcccc------ceeEeecccccccccCCccccccch
Confidence 01125688888888888754 45666766 455555555
Q ss_pred ccCCCCCCeEeCcCccccc
Q 046844 829 FGNLKEIESLDLSMNNLSG 847 (967)
Q Consensus 829 ~~~l~~L~~LdLs~N~l~g 847 (967)
+.++..++...+++|-+.+
T Consensus 387 ~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 387 ATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------------CCCG
T ss_pred hhcccccceeeeecccccc
Confidence 6677777777777777764
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=5e-17 Score=163.46 Aligned_cols=155 Identities=13% Similarity=0.194 Sum_probs=95.9
Q ss_pred CCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCC
Q 046844 640 PGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLL 719 (967)
Q Consensus 640 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L 719 (967)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++.. |..+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGG--SCCCTTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCccc--ChhhcCCCCC
Confidence 34566777777777776 334 46667777777777775543 235666677777777777666544 4555555555
Q ss_pred cEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccC
Q 046844 720 QIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEG 799 (967)
Q Consensus 720 ~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g 799 (967)
+.|++++|+ +++
T Consensus 115 ~~L~Ls~n~--------------------------------------------------------------------i~~ 126 (197)
T 4ezg_A 115 TLLDISHSA--------------------------------------------------------------------HDD 126 (197)
T ss_dssp CEEECCSSB--------------------------------------------------------------------CBG
T ss_pred CEEEecCCc--------------------------------------------------------------------cCc
Confidence 555555554 444
Q ss_pred CCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEEccCCcccc
Q 046844 800 PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 871 (967)
Q Consensus 800 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 871 (967)
..|..++.+++|+.|+|++|.+.+.+| .++.+++|+.|++++|++++ +| .+..++.|+.|++++|++.+
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 555556666777777777776333455 46777777777777777765 33 56677777777777777643
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=5.1e-18 Score=204.78 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=124.1
Q ss_pred CCCcEEEcccCcCCCCCCcccccCC---CCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCC
Q 046844 592 TNFQVLDLSNNNLSGTIPACLITKS---SSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNM 668 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~~---~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 668 (967)
+.++.|+|.+|.+.. ++..+.... ...+..++++.|.+. ..|.. |..+..|+.|+|++|++. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~-~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDS-KYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhh-hccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 345666776666653 232211110 001222333444443 33444 889999999999999999 66777779999
Q ss_pred CCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCC
Q 046844 669 LQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKS 748 (967)
Q Consensus 669 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~ 748 (967)
|++|+|++|+|+ .+|..|+++++|++|+|++|+|+ .+ |..+..+++|+.|+|++|.++ .+|..+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l--p~~~~~l~~L~~L~L~~N~l~-~lp~~~----------- 312 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL--PAELGSCFQLKYFYFFDNMVT-TLPWEF----------- 312 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC--CSSGGGGTTCSEEECCSSCCC-CCCSST-----------
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc--ChhhcCCCCCCEEECCCCCCC-ccChhh-----------
Confidence 999999999999 68889999999999999999999 44 999999999999999999986 666322
Q ss_pred CcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCC-cEEECCCCCCcccCCc
Q 046844 749 GSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSL-YALNMSHNALTGSIPS 827 (967)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L-~~L~Ls~N~l~g~ip~ 827 (967)
..++.|+.|+|++|+|+|.+|..++.+... ..|+|++|.++|.+|.
T Consensus 313 ---------------------------------~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 313 ---------------------------------GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp ---------------------------------TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ---------------------------------hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 256789999999999999999988765332 3478999999999997
Q ss_pred cccCCCCCCeEeCcCc--------cccccCCccccCCCCCCeEEccCCccccCCC
Q 046844 828 SFGNLKEIESLDLSMN--------NLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 874 (967)
Q Consensus 828 ~~~~l~~L~~LdLs~N--------~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 874 (967)
. |+.|++++| .|.+.++..+.++..+....+++|-+.+...
T Consensus 360 ~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 360 E------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp C-----------------------------------------------CCCGGGC
T ss_pred c------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 5 456667777 5666666667778888889999999875544
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=5.1e-17 Score=171.25 Aligned_cols=171 Identities=20% Similarity=0.272 Sum_probs=132.8
Q ss_pred cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
.+.++..+++++|.+++ ++ .+..+. +|+.|++++|.++ .+| . +..+++|++|+|++|++++..+ +..+++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~--~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELS--GVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHT--TCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcC--cCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence 45678888999999984 44 355555 9999999999998 677 3 8889999999999999997655 9999999
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCC
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSG 749 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~ 749 (967)
+.|++++|++++..+ +.. ++|+.|++++|++++. + .+..+++|+.||+++|++
T Consensus 88 ~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---~-~l~~l~~L~~L~Ls~N~i-------------------- 140 (263)
T 1xeu_A 88 EELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT---D-SLIHLKNLEILSIRNNKL-------------------- 140 (263)
T ss_dssp CEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS---G-GGTTCTTCCEEECTTSCC--------------------
T ss_pred CEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC---h-hhcCcccccEEECCCCcC--------------------
Confidence 999999999998543 233 9999999999999874 2 355555555555555554
Q ss_pred cccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccc
Q 046844 750 SEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSF 829 (967)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 829 (967)
++. | .++.+++|+.|+|++|++++. ..+
T Consensus 141 ------------------------------------------------~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 141 ------------------------------------------------KSI-V-MLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp ------------------------------------------------CBC-G-GGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred ------------------------------------------------CCC-h-HHccCCCCCEEECCCCcCcch--HHh
Confidence 432 3 466777788888888888765 667
Q ss_pred cCCCCCCeEeCcCcccccc
Q 046844 830 GNLKEIESLDLSMNNLSGK 848 (967)
Q Consensus 830 ~~l~~L~~LdLs~N~l~g~ 848 (967)
+.+++|+.||+++|.+++.
T Consensus 169 ~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCCCCEEEEEEEEEECC
T ss_pred ccCCCCCEEeCCCCcccCC
Confidence 7888888888888888765
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.7e-16 Score=158.12 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=119.4
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 698 (967)
+|+.|++++|.++ .+| . +..+++|++|++++|.++. +..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 8999999999998 777 4 8889999999999997763 357899999999999999999988999999999999999
Q ss_pred cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEcccee
Q 046844 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEI 778 (967)
Q Consensus 699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (967)
++|++++.. |..+..+++|+.|++++|+
T Consensus 120 s~n~i~~~~--~~~l~~l~~L~~L~L~~n~-------------------------------------------------- 147 (197)
T 4ezg_A 120 SHSAHDDSI--LTKINTLPKVNSIDLSYNG-------------------------------------------------- 147 (197)
T ss_dssp CSSBCBGGG--HHHHTTCSSCCEEECCSCT--------------------------------------------------
T ss_pred cCCccCcHh--HHHHhhCCCCCEEEccCCC--------------------------------------------------
Confidence 999999755 5555566666666555554
Q ss_pred eecccCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccc
Q 046844 779 KLLKVPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSG 847 (967)
Q Consensus 779 ~~~~~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g 847 (967)
+.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus 148 ------------------~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 148 ------------------AITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ------------------BCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ------------------CccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 223344 46777888888888888875 44 67788888888888888764
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=6.1e-17 Score=161.89 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=80.9
Q ss_pred cCCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeE
Q 046844 783 VPNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVL 862 (967)
Q Consensus 783 ~~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l 862 (967)
.++.|+.|+|++|++++.+|..|+.+++|++|+|++|++++..|..|+++++|+.|||++|++++.+|..+..++.|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 35567778888888888888888999999999999999998888889999999999999999999999999999999999
Q ss_pred EccCCccccCCCC
Q 046844 863 NLSYNNLVGKIPT 875 (967)
Q Consensus 863 ~ls~N~l~g~ip~ 875 (967)
++++|.++|..|.
T Consensus 132 ~L~~N~l~c~c~l 144 (192)
T 1w8a_A 132 NLASNPFNCNCHL 144 (192)
T ss_dssp ECTTCCBCCSGGG
T ss_pred EeCCCCccCcCcc
Confidence 9999999887763
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=152.46 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=124.9
Q ss_pred cEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEEC
Q 046844 595 QVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDL 674 (967)
Q Consensus 595 ~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 674 (967)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|.. |..+++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP----RDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC----TTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC-cCCCCCC----CCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 57899999998 7887653 28999999999998 88865 999999999999999999988899999999999999
Q ss_pred CCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844 675 RSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV 743 (967)
Q Consensus 675 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 743 (967)
++|+|+++.|..|.++++|++|+|++|++++.. +..+..+++|+.|++++|++.+.+...|+..+..
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 999999999999999999999999999999775 5678899999999999999999999888765543
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.4e-14 Score=142.82 Aligned_cols=135 Identities=21% Similarity=0.206 Sum_probs=118.3
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
+.+.+++++|+++ .+|..+. ++|+.|++++|+++ .+|...|..+++|++|++++|++++..+..|..+++|++|
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC----TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEecCCCCc-cCCCCCC----CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 3578899999987 6775542 28999999999998 5665558999999999999999998888889999999999
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccCcCcCcH
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQ 735 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~ 735 (967)
++++|++++..+..+.++++|++|++++|++++.. +..+..+++|+.|++++|+++|.+|.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCcc
Confidence 99999999988888999999999999999999764 55568899999999999999999983
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=142.03 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=49.9
Q ss_pred ceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc-CCccccCCCCCCeEeCcCccccccCC---ccccCCCCCCeE
Q 046844 787 FTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS-IPSSFGNLKEIESLDLSMNNLSGKIP---AQLASLNFLSVL 862 (967)
Q Consensus 787 l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~l 862 (967)
|+.|++++|++++.+|..++.+++|++|+|++|++++. .+..++.+++|+.||+++|.+++..+ ..+..++.|++|
T Consensus 73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 34444444444444555555566666666666666653 22566666666666666666665544 356666667777
Q ss_pred EccCCccc
Q 046844 863 NLSYNNLV 870 (967)
Q Consensus 863 ~ls~N~l~ 870 (967)
++++|.+.
T Consensus 153 ~l~~n~~~ 160 (168)
T 2ell_A 153 DGYDREDQ 160 (168)
T ss_dssp TTEETTSC
T ss_pred cCCCCChh
Confidence 77666653
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=8.6e-15 Score=139.78 Aligned_cols=129 Identities=22% Similarity=0.184 Sum_probs=109.6
Q ss_pred CCCCcEEEcccCcCC-CCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 591 ATNFQVLDLSNNNLS-GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 591 ~~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
.++|+.|++++|.++ +.+|..+..+. +|++|++++|.+++. .. |..+++|++|++++|++++.+|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFE--ELEFLSTINVGLTSI--AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCT--TCCEEECTTSCCCCC--TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcC--CCcEEECcCCCCCCc--hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 367899999999998 78888776665 899999999999854 33 8889999999999999998888888889999
Q ss_pred CEEECCCCccccc-cchhhhcCCCCCEEEccCCccceecCCC---CCCCCCCCCcEEecCC
Q 046844 670 QVLDLRSNYISDN-FPCWLRNASSLQVLVLRSNNFSGHISCP---RNKVSWPLLQIVDLAC 726 (967)
Q Consensus 670 ~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~p---~~~~~l~~L~~Ldls~ 726 (967)
++|++++|++++. .+..+..+++|++|++++|++++.. + ..+..+++|+.||+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN--DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST--THHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH--HHHHHHHHHCCCcccccCCC
Confidence 9999999999885 4578899999999999999998763 3 3678889999999874
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.3e-14 Score=141.07 Aligned_cols=110 Identities=26% Similarity=0.329 Sum_probs=92.1
Q ss_pred CCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCE
Q 046844 592 TNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQV 671 (967)
Q Consensus 592 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 671 (967)
++|++|++++|+++ .+|..+.... +|+.|+|++|.++ .++...|.++++|++|+|++|+|++..|..|..+++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~--~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYK--HLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCT--TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCc-hhHHHhhccc--CCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 46788888888887 7777776665 8888888888888 455444888899999999999999888888889999999
Q ss_pred EECCCCccccccchhhhcCCCCCEEEccCCccce
Q 046844 672 LDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSG 705 (967)
Q Consensus 672 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 705 (967)
|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999999988777788889999999999998864
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.3e-14 Score=141.63 Aligned_cols=133 Identities=22% Similarity=0.131 Sum_probs=115.0
Q ss_pred CCCCcEEEcccCcCC-CCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 591 ATNFQVLDLSNNNLS-GTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 591 ~~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
.++|+.|++++|+++ +.+|..+.... +|++|++++|.+++ + .. |..+++|++|++++|++++.+|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~--~L~~L~l~~n~l~~-~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFV--NLEFLSLINVGLIS-V-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGG--GCCEEEEESSCCCC-C-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCC--CCCEEeCcCCCCCC-h-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 478999999999998 78888777665 89999999999985 4 33 8889999999999999998888888889999
Q ss_pred CEEECCCCcccccc-chhhhcCCCCCEEEccCCccceecCCC---CCCCCCCCCcEEecCCccCc
Q 046844 670 QVLDLRSNYISDNF-PCWLRNASSLQVLVLRSNNFSGHISCP---RNKVSWPLLQIVDLACNKFS 730 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~p---~~~~~l~~L~~Ldls~N~l~ 730 (967)
++|++++|++++.. +..+..+++|++|++++|++++.. + ..+..+++|+.||+++|.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN--DYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST--THHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH--HHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999853 378899999999999999998763 2 26888999999999999875
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=4e-15 Score=162.78 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=57.9
Q ss_pred CCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCccc-EEeCCCCccCCCCcccccCCCCC
Q 046844 591 ATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQ-ILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 591 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
+++|+.+++++|+++..-+.+|..+. +|+.++|.+| +. .|+..+|.++.+|+ .+++.+ .++.+.+.+|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~--~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKK--YLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCT--TCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCC--CCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 55666666666666532233344443 5666666655 44 55555566666666 666655 5554555556666666
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEE
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQVLV 697 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 697 (967)
+.+++++|+++.+.+.+|.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666666655555566666665554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.2e-14 Score=138.88 Aligned_cols=80 Identities=21% Similarity=0.247 Sum_probs=50.8
Q ss_pred cceEEECCCCcccCCCcccccCCCCCcEEECCCCCCccc-CCccccCCCCCCeEeCcCccccccCC---ccccCCCCCCe
Q 046844 786 IFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGS-IPSSFGNLKEIESLDLSMNNLSGKIP---AQLASLNFLSV 861 (967)
Q Consensus 786 ~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~ 861 (967)
.|+.|++++|++++.+|..++.+++|++|++++|++++. .|..++.+++|+.||+++|.+++..+ ..+..++.|++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 344455555555555555566666677777777777652 34666777777777777777776655 45666777777
Q ss_pred EEcc
Q 046844 862 LNLS 865 (967)
Q Consensus 862 l~ls 865 (967)
||++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 7665
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=5.4e-14 Score=138.57 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=72.6
Q ss_pred CCcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCeEE
Q 046844 784 PNIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSVLN 863 (967)
Q Consensus 784 ~~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ 863 (967)
++.|+.|++++|++++..|..|+.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..+..+..++.|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34455666666666666666678888889999999998887777788888999999999999877666678888899999
Q ss_pred ccCCccccCCC
Q 046844 864 LSYNNLVGKIP 874 (967)
Q Consensus 864 ls~N~l~g~ip 874 (967)
+++|+++|.+|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 99998888776
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=2.3e-14 Score=156.64 Aligned_cols=272 Identities=14% Similarity=0.063 Sum_probs=129.9
Q ss_pred CCCccEEEccCCCCCCCCcccccC-CCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccC-------
Q 046844 174 LPNLQVLSLSGCDLSGPINHYLAK-SRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILH------- 245 (967)
Q Consensus 174 l~~L~~L~Ls~~~l~~~~~~~l~~-l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------- 245 (967)
++++++|.++++ +.......+.. +++|++|+|++|.+...... -+.++.++.+.+..+.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMANFV---PAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc-ccccccccccccccccc---CHHHhccccccccc
Confidence 445677777653 11111122333 56677777777765511000 01112233343333321 2234445
Q ss_pred -CCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCC----CCCCCCccccCCCC
Q 046844 246 -VPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCN----FTGPIPPSMANLTQ 320 (967)
Q Consensus 246 -l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~l~~l~~ 320 (967)
+++|++|++.. .+..+...+|.+|++|+++++.+|.+....+.+|..+.++..+....+. .......+|..+..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77777777776 5666666667777777777777777665555666666666665554421 11122333444555
Q ss_pred Cc-EEEccCccccc-cCc-cccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEe
Q 046844 321 LF-HMDFSSNHFFG-PIP-SLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQ 397 (967)
Q Consensus 321 L~-~L~L~~n~l~~-~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 397 (967)
|+ .+.+....... .+. ......+++.+.+.++-.. .....+...+++|+.+++++|.++...+.+|.++++|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 54 33333221100 000 0011224455555433111 11111122366777777777666654455666677777777
Q ss_pred CcCCcCccccccccccCCCccc-EEEeeCCcCCCCCChhhhccCCCCCEEECCCCccccc
Q 046844 398 LSNNQFENQLPEISNVSSSVLF-DLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRL 456 (967)
Q Consensus 398 L~~n~l~~~~~~~~~~~~~~L~-~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l 456 (967)
+.+| +. .++...+..+.+|+ .+++.+ .++ .|+...|.+|++|+.++++.|+++.+
T Consensus 257 l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 257 LPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred CCcc-cc-eehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCcc
Confidence 7665 33 23333344444444 444444 333 34444444555555555444444433
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.2e-13 Score=131.68 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=89.6
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 698 (967)
+.+.+++++|.++ .+|.. +. .+|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~-~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTG-IP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCcc-CC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3466777777776 56665 22 57788888888888777778888888888888888888877777888888888888
Q ss_pred cCCccceecCCCCCCCCCCCCcEEecCCccCcCcCc-HHHHHHH
Q 046844 699 RSNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS-QKWLLTM 741 (967)
Q Consensus 699 ~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p-~~~~~~~ 741 (967)
++|+|++.. +..+..+++|+.|+|++|++++.++ ..++..+
T Consensus 86 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~ 127 (170)
T 3g39_A 86 NDNQLKSIP--RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW 127 (170)
T ss_dssp CSSCCCCCC--TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHH
T ss_pred CCCccCEeC--HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHH
Confidence 888888765 5568888899999999999998886 3444333
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.3e-13 Score=135.69 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=113.1
Q ss_pred hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844 588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667 (967)
Q Consensus 588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 667 (967)
+.++.+|+.|++++|+++ .+|....... +|+.|++++|.+++ + .. |..+++|++|++++|++++..+..|..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~--~L~~L~Ls~N~l~~-~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLD--QFDAIDFSDNEIRK-L-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTT--CCSEEECCSSCCCE-E-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCC--CCCEEECCCCCCCc-c-cc-cccCCCCCEEECCCCcccccCcchhhcCC
Confidence 456789999999999998 5665333322 89999999999995 4 34 89999999999999999987667779999
Q ss_pred CCCEEECCCCccccccch--hhhcCCCCCEEEccCCccceecCCCCC----CCCCCCCcEEecCCccCc
Q 046844 668 MLQVLDLRSNYISDNFPC--WLRNASSLQVLVLRSNNFSGHISCPRN----KVSWPLLQIVDLACNKFS 730 (967)
Q Consensus 668 ~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~p~~----~~~l~~L~~Ldls~N~l~ 730 (967)
+|++|++++|+++. +|. .+..+++|+.|++++|+++.. |.. +..+++|+.||++.|...
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~---~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc---HhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999976 454 889999999999999999854 664 888999999999999865
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.1e-15 Score=153.82 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=55.8
Q ss_pred CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCC-ccccCCCCCCeEeCcCccccccCCcc----------c
Q 046844 785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIP-SSFGNLKEIESLDLSMNNLSGKIPAQ----------L 853 (967)
Q Consensus 785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~g~ip~~----------l 853 (967)
+.|+.|++++|++++ +| .++.+++|+.|+|++|++++..+ ..++.+++|+.|++++|.+++.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 345566666666665 44 46777778888888888775322 46777888888888888887776653 6
Q ss_pred cCCCCCCeEEccCCcc
Q 046844 854 ASLNFLSVLNLSYNNL 869 (967)
Q Consensus 854 ~~l~~L~~l~ls~N~l 869 (967)
..++.|++|| +|.+
T Consensus 171 ~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHCSSCSEEC--CGGG
T ss_pred HhCCCcEEEC--Cccc
Confidence 7788888776 4444
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.1e-12 Score=128.38 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=77.6
Q ss_pred cEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccC
Q 046844 621 EVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRS 700 (967)
Q Consensus 621 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 700 (967)
+.+++++|.+. .+|.. +. .+|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAG-IP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCC-cC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666665 56655 22 5677777777777776677777777777777777777776666677777777777777
Q ss_pred CccceecCCCCCCCCCCCCcEEecCCccCcCcCc
Q 046844 701 NNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLS 734 (967)
Q Consensus 701 N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p 734 (967)
|+|++.. +..+..+++|+.|++++|++.+.++
T Consensus 91 N~l~~l~--~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIP--RGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCC--TTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeC--HHHhccccCCCEEEeCCCCcccccc
Confidence 7777654 4457778888888888888888776
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=5.1e-13 Score=131.31 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=40.0
Q ss_pred ccCCCCCcEEECCCCCCcccCCc--cccCCCCCCeEeCcCccccccCCcc----ccCCCCCCeEEccCCccc
Q 046844 805 MGRFRSLYALNMSHNALTGSIPS--SFGNLKEIESLDLSMNNLSGKIPAQ----LASLNFLSVLNLSYNNLV 870 (967)
Q Consensus 805 ~~~l~~L~~L~Ls~N~l~g~ip~--~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~l~ls~N~l~ 870 (967)
++.+++|+.|+|++|+++ .+|. .++.+++|+.|++++|.++ .+|.. +..++.|++||++.|...
T Consensus 84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 455666666666666664 3454 5666666666666666666 34443 666677777777766653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.8e-15 Score=152.25 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=107.3
Q ss_pred cccEEeCCCCccCCCCcc------cccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCC
Q 046844 644 GLQILDLSGNQLQGVVPK------SLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWP 717 (967)
Q Consensus 644 ~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~ 717 (967)
.++.++++.+.+++..|. .|..+++|++|++++|++++ +| .+.++++|++|++++|+++.. |..+..++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l---~~~~~~~~ 93 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI---ENLDAVAD 93 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC---SSHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc---cchhhcCC
Confidence 344444444444444443 77777778888888887777 45 677777888888888877732 65566667
Q ss_pred CCcEEecCCccCcCcCcHHHHHHHhhcccCCCcccccccccCCCCceeeEEEEEEEccceeeecccCCcceEEECCCCcc
Q 046844 718 LLQIVDLACNKFSGRLSQKWLLTMMVAETKSGSEVNHLGIEMPSNQFYEVRVTVTVKGIEIKLLKVPNIFTSIDFSSNNF 797 (967)
Q Consensus 718 ~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~Ls~N~l 797 (967)
+|+.|++++|++++ +| .+. .++.|+.|++++|++
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~--------------------------------------------~l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIE--------------------------------------------KLVNLRVLYMSNNKI 127 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHH--------------------------------------------HHHHSSEEEESEEEC
T ss_pred cCCEEECcCCcCCc-CC-ccc--------------------------------------------cCCCCCEEECCCCcC
Confidence 78888888888775 33 111 244577888888888
Q ss_pred cCCCc-ccccCCCCCcEEECCCCCCcccCCcc----------ccCCCCCCeEeCcCccccc
Q 046844 798 EGPIP-VEMGRFRSLYALNMSHNALTGSIPSS----------FGNLKEIESLDLSMNNLSG 847 (967)
Q Consensus 798 ~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------~~~l~~L~~LdLs~N~l~g 847 (967)
++..+ ..++.+++|++|++++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 75433 47889999999999999999888764 88999999998 666653
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.6e-12 Score=126.63 Aligned_cols=108 Identities=24% Similarity=0.234 Sum_probs=92.8
Q ss_pred CCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEE
Q 046844 593 NFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVL 672 (967)
Q Consensus 593 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 672 (967)
+.+.+++++|.++ .+|..+. ++|++|+|++|++++..|.. |..+++|++|+|++|+|++..+..|..+++|++|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~----~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP----TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcC-ccCccCC----CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 3578999999998 6787653 28999999999999555555 8999999999999999998888888999999999
Q ss_pred ECCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844 673 DLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706 (967)
Q Consensus 673 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 706 (967)
+|++|+|++..+..|.++++|++|+|++|++++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999998888899999999999999998754
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=1.6e-11 Score=136.81 Aligned_cols=248 Identities=12% Similarity=0.133 Sum_probs=121.1
Q ss_pred hhhcCCCCCCEEeccCCCCCCccchhccCCCCCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCC
Q 046844 217 EFLAHLTNLKALDLSECGLQGKFPEKILHVPTLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLEN 296 (967)
Q Consensus 217 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 296 (967)
.+|.++ +|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .+......+|.+|++|+.+++.+|.+......+|. +.+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 334443 4555555443 33333334444 2455555553 34444445555666666666666655543333444 456
Q ss_pred CCEEEccCCCCCCCCCccccCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCC
Q 046844 297 LTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGH 376 (967)
Q Consensus 297 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 376 (967)
|+.+.+..+ ++.....+|.++++|+.+++..+ ++..-...+...+|+.+.+. +.+. .++...|.++++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCC
Confidence 666666533 44344455666666666666543 22222222222455555552 2232 33333456666666666655
Q ss_pred CcCC-----CCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCC
Q 046844 377 NSLS-----GSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSN 451 (967)
Q Consensus 377 n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n 451 (967)
+.+. ...+.+|..|++|+.+.+.+ .+. .++...|.+|++|+.+.+..+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~--------------------------~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR--------------------------ILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC--------------------------EECTTTTTTCCSCCEEEECTT
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceE--------------------------EEhhhhhcCCCCccEEEECcc
Confidence 5443 12233444555555555542 122 445555566666666666443
Q ss_pred cccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeecccccc
Q 046844 452 KFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNLV 511 (967)
Q Consensus 452 ~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~l 511 (967)
++.+.... |.++ +|+.+++++|.+....+..|.... .+++.|.+..+.+
T Consensus 334 -l~~I~~~a--------F~~~-~L~~l~l~~n~~~~l~~~~F~~~~-~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSA--------FNNT-GIKEVKVEGTTPPQVFEKVWYGFP-DDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTS--------SSSS-CCCEEEECCSSCCBCCCSSCCCSC-TTCCEEEECGGGH
T ss_pred -ccEEcHHh--------CCCC-CCCEEEEcCCCCcccccccccCCC-CCccEEEeCHHHH
Confidence 43332211 5556 666666666655543333333221 2445555555443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=3.9e-12 Score=124.37 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=92.4
Q ss_pred CcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEE
Q 046844 594 FQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLD 673 (967)
Q Consensus 594 L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 673 (967)
-+.+++++|+++ .+|..+. ++|++|+|++|++++..|.. |..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~----~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP----TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCCC-ccCCCcC----CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 368999999996 7887663 28999999999999655655 99999999999999999988777789999999999
Q ss_pred CCCCccccccchhhhcCCCCCEEEccCCcccee
Q 046844 674 LRSNYISDNFPCWLRNASSLQVLVLRSNNFSGH 706 (967)
Q Consensus 674 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 706 (967)
|++|+|++..+..|..+++|+.|+|++|++...
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999999988777799999999999999998754
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=1.5e-11 Score=137.10 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=38.9
Q ss_pred CcceEEECCCCcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCC-CCCeEE
Q 046844 785 NIFTSIDFSSNNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN-FLSVLN 863 (967)
Q Consensus 785 ~~l~~l~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~ 863 (967)
..|+.+++. ++++-.-...|.+++.|+.++|..| ++-.-+..|.++ +|+.+++++|.+.-..+..|.+++ .+..+.
T Consensus 300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 334444444 2233333344555555666665433 443344455555 566666666655544444455442 444554
Q ss_pred ccCC
Q 046844 864 LSYN 867 (967)
Q Consensus 864 ls~N 867 (967)
+..|
T Consensus 377 vp~~ 380 (401)
T 4fdw_A 377 VPAE 380 (401)
T ss_dssp ECGG
T ss_pred eCHH
Confidence 4433
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=9.1e-11 Score=131.52 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=38.9
Q ss_pred CccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEc
Q 046844 619 TLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVL 698 (967)
Q Consensus 619 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 698 (967)
+|+.+.+.++ ++ .|+..+|.++.+|+.+++.++ ++.+-..+|.+|++|+.+++..| ++.+...+|.+|++|+.+++
T Consensus 298 ~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 298 SLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred cccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 4444444332 32 444444555555555555432 44344445555555555555544 44444455555555555555
Q ss_pred cC
Q 046844 699 RS 700 (967)
Q Consensus 699 ~~ 700 (967)
..
T Consensus 374 p~ 375 (394)
T 4fs7_A 374 PK 375 (394)
T ss_dssp EG
T ss_pred CC
Confidence 43
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.28 E-value=1e-10 Score=131.17 Aligned_cols=311 Identities=13% Similarity=0.072 Sum_probs=170.4
Q ss_pred HhcCCCCccEEEccCCCCCCCCcccccCCCCCCEEEccCCCCCCcchhhhcCCCCCCEEeccCCCCCCccchhccCCCCC
Q 046844 170 ALSFLPNLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNYGLSSGTEFLAHLTNLKALDLSECGLQGKFPEKILHVPTL 249 (967)
Q Consensus 170 ~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (967)
++..+.+|+++.+.. .++.....+|.++++|+.+++..+ +......+|.+++.|+.+.+..+ +......+|.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 445555555555543 244333455666666666666543 33333445666666666555433 222333344444332
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCc
Q 046844 250 ETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLSGTLPDSIGNLENLTRVEVSSCNFTGPIPPSMANLTQLFHMDFSSN 329 (967)
Q Consensus 250 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 329 (967)
+...... .......+|..+.+|+.+.+..+. ......+|.++.+|+.+++..+ ++.....++.++..|+.+.+..+
T Consensus 143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 143 EITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 2222221 223344456667777777775443 2234456667777777777655 33333455666777777666554
Q ss_pred cccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCcccccc
Q 046844 330 HFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPE 409 (967)
Q Consensus 330 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 409 (967)
... .-...+....|+.+.+.... . .+....+..+..++.+.+..+... .....+..+..++.+......+ +.
T Consensus 219 ~~~-i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~ 290 (394)
T 4fs7_A 219 LYY-LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PE 290 (394)
T ss_dssp CCE-ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CT
T ss_pred ceE-eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee----cc
Confidence 322 11122333467777665432 1 233334667777777777665433 3445666777777776665432 33
Q ss_pred ccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCC
Q 046844 410 ISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEV 489 (967)
Q Consensus 410 ~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~ 489 (967)
..+..+.+|+.+.+..+ +. .|+...|.++.+|+.+++..+ ++.+.... |.+|++|+.+++..+ ++...
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a--------F~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRS--------FRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTT--------TTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHh--------ccCCCCCCEEEECcc-ccEeh
Confidence 34456677777777654 33 566677778888888887643 44443221 777788888877665 44333
Q ss_pred CcchhccCCCCcceeecccc
Q 046844 490 PNWIWEVGSGNLKFLNLSHN 509 (967)
Q Consensus 490 ~~~~~~~~~~~L~~L~Ls~n 509 (967)
...|.. +.+|+.+++..+
T Consensus 359 ~~aF~~--C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ANAFQG--CINLKKVELPKR 376 (394)
T ss_dssp TTTBTT--CTTCCEEEEEGG
T ss_pred HHHhhC--CCCCCEEEECCC
Confidence 334433 345777777544
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=4.2e-11 Score=131.91 Aligned_cols=116 Identities=21% Similarity=0.198 Sum_probs=87.8
Q ss_pred EEECCCC-cCcccCCCCCCCCCCcccEEeCCC-CccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEcc
Q 046844 622 VLNLGRN-NLNGTLSDTIFPGDCGLQILDLSG-NQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLR 699 (967)
Q Consensus 622 ~L~Ls~N-~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 699 (967)
.++++++ +++ .||. ++.+.+|++|+|++ |+|++..+..|.++++|+.|+|++|+|+++.|..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 666 5776 66777788888875 88887777788888888888888888888888888888888888888
Q ss_pred CCccceecCCCCCCCCCCCCcEEecCCccCcCcCcHHHHHHHhh
Q 046844 700 SNNFSGHISCPRNKVSWPLLQIVDLACNKFSGRLSQKWLLTMMV 743 (967)
Q Consensus 700 ~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~ 743 (967)
+|+|++.. +..+..++ |+.|+|++|++.+.+...++..+..
T Consensus 89 ~N~l~~~~--~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 89 FNALESLS--WKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp SSCCSCCC--STTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred CCccceeC--HHHcccCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence 88888664 44444444 8899999999988888777755543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=9.6e-13 Score=145.35 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=24.6
Q ss_pred cccCCCCCcEEECCCCCCccc----CCccccCCCCCCeEeCcCccccccCCccc
Q 046844 804 EMGRFRSLYALNMSHNALTGS----IPSSFGNLKEIESLDLSMNNLSGKIPAQL 853 (967)
Q Consensus 804 ~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~ip~~l 853 (967)
.+...+.|+.|||++|.+++. ++..+...++|++|||++|.|++.-...+
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 344445555555555555532 22333344555555555555554433333
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=2.1e-12 Score=142.64 Aligned_cols=88 Identities=16% Similarity=0.283 Sum_probs=70.1
Q ss_pred CcceEEECCCCcccC----CCcccccCCCCCcEEECCCCCCccc----CCccccCCCCCCeEeCcCcccccc----CCcc
Q 046844 785 NIFTSIDFSSNNFEG----PIPVEMGRFRSLYALNMSHNALTGS----IPSSFGNLKEIESLDLSMNNLSGK----IPAQ 852 (967)
Q Consensus 785 ~~l~~l~Ls~N~l~g----~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~g~----ip~~ 852 (967)
..|+.|+|++|.++. .++..+..++.|++|||++|.+++. ++..+...++|+.|||++|.|++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 457778888888764 3445567788999999999999863 466778889999999999999864 4455
Q ss_pred ccCCCCCCeEEccCCccccC
Q 046844 853 LASLNFLSVLNLSYNNLVGK 872 (967)
Q Consensus 853 l~~l~~L~~l~ls~N~l~g~ 872 (967)
+...+.|++||+++|.+++.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHH
T ss_pred HHhCCCCCEEeccCCCCCHH
Confidence 66779999999999998653
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=2.9e-10 Score=125.15 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=67.4
Q ss_pred cCCcceEEECCC-CcccCCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccccccCCccccCCCCCCe
Q 046844 783 VPNIFTSIDFSS-NNFEGPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLNFLSV 861 (967)
Q Consensus 783 ~~~~l~~l~Ls~-N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 861 (967)
.+..|+.|+|++ |+|++..|..|+.+++|+.|+|++|+|+|.+|..|++|++|+.|||++|+|++..|..+..++ |+.
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence 345577788875 788777777788888888888888888887777788888888888888888876666666665 888
Q ss_pred EEccCCccccC
Q 046844 862 LNLSYNNLVGK 872 (967)
Q Consensus 862 l~ls~N~l~g~ 872 (967)
|++++|.+...
T Consensus 108 l~l~~N~~~c~ 118 (347)
T 2ifg_A 108 LVLSGNPLHCS 118 (347)
T ss_dssp EECCSSCCCCC
T ss_pred EEeeCCCccCC
Confidence 88888877653
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.05 E-value=1.1e-08 Score=114.49 Aligned_cols=263 Identities=11% Similarity=0.150 Sum_probs=150.7
Q ss_pred CCChhhhccCCCCCEEECCCCcccccccCCCCCccCCCCCCCCCccEEECcCCccCCCCCcchhccCCCCcceeeccccc
Q 046844 431 PVPISIFFELRNLYTLDLSSNKFSRLKLASSKPRAIPILKNQSQLSVLDISDNQISGEVPNWIWEVGSGNLKFLNLSHNL 510 (967)
Q Consensus 431 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~ip~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~Ls~n~ 510 (967)
.++...|..+.+|+.+.+..+ +..+... .+..+.+|+.+.+..+ ++......|.. ..|+.+.+..+-
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~--------~F~~c~~L~~i~~~~~-~~~I~~~aF~~---~~l~~i~ip~~~ 193 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADG--------MFSYCYSLHTVTLPDS-VTAIEERAFTG---TALTQIHIPAKV 193 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTT--------TTTTCTTCCEEECCTT-CCEECTTTTTT---CCCSEEEECTTC
T ss_pred eehhhhhhhhcccccccccce-eeeeccc--------ceecccccccccccce-eeEeccccccc---cceeEEEECCcc
Confidence 456677788999999998654 3322211 1778888999988765 33222233321 357777765542
Q ss_pred ccC-cCCCCCCCCccEEeCCCCCCCCCCCCCCCCCceeeccCCcCCCCCcchhccccccceeeeeecCCcccccCChhhh
Q 046844 511 VVS-LQEPYSISGIRFLDLHSNQLRGNIPYMSPNTSYVDYSNNNFTSIPADIGNFMSETEYFYFVAANNSLAGVIPESVC 589 (967)
Q Consensus 511 l~~-l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ls~n~l~~i~~~~~~~~~~l~~~~l~l~~n~l~~~~p~~~~ 589 (967)
..- ......+..++......+.....-.. -...+..... ....+........+.+ .+.+...-..+|.
T Consensus 194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~ 262 (394)
T 4gt6_A 194 TRIGTNAFSECFALSTITSDSESYPAIDNV--------LYEKSANGDY--ALIRYPSQREDPAFKI-PNGVARIETHAFD 262 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECCSSSCBSSSC--------EEEECTTSCE--EEEECCTTCCCSEEEC-CTTEEEECTTTTT
T ss_pred cccccchhhhccccceecccccccccccce--------eecccccccc--cccccccccccceEEc-CCcceEcccceee
Confidence 211 12222355555555444332211000 0000000000 0000000000000111 1223333445678
Q ss_pred cCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCC
Q 046844 590 KATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNML 669 (967)
Q Consensus 590 ~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 669 (967)
.+..|+.+.+.++..+ .-...+..+. .|+.+.+. +.++ .|+..+|.++.+|+.+++..+ ++.+-..+|.+|++|
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~--~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCP--ALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCT--TCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ecccccEEecccccce-ecCccccccc--ccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 8899999999766543 3344555655 89999996 4566 788888999999999999865 666667889999999
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEEccCCccceecCCCCCCCCCCCCcEEecCCccC
Q 046844 670 QVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNFSGHISCPRNKVSWPLLQIVDLACNKF 729 (967)
Q Consensus 670 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~p~~~~~l~~L~~Ldls~N~l 729 (967)
+.+.+..+ ++.+...+|.+|++|+.+++.++.... ..+.....|+.+++..|.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence 99999755 777778899999999999999987542 2355667788888776654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=1.9e-08 Score=112.52 Aligned_cols=107 Identities=13% Similarity=0.246 Sum_probs=62.6
Q ss_pred hhcCCCCcEEEcccCcCCCCCCcccccCCCCCccEEECCCCcCcccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCC
Q 046844 588 VCKATNFQVLDLSNNNLSGTIPACLITKSSSTLEVLNLGRNNLNGTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCN 667 (967)
Q Consensus 588 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 667 (967)
+.++++|+.+.+. +.++..-..+|..+. +|+.++|..+ ++ .|...+|.++.+|+.+.+..+ ++.+-..+|.+|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~--~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCI--SLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCT--TCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred cccccccccccCC-CcccccCceeecCCC--CcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 3344555555553 233312223344444 6666666543 44 677777888888998888654 6666677899999
Q ss_pred CCCEEECCCCccccccchhhhcCCCCCEEEccCCcc
Q 046844 668 MLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSNNF 703 (967)
Q Consensus 668 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 703 (967)
+|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 99999998876532 4566788888888776654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=5.6e-09 Score=114.02 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=18.8
Q ss_pred CCCCcEEEccCcccccc----Ccc-ccccCcccEEECCCCCCC
Q 046844 318 LTQLFHMDFSSNHFFGP----IPS-LHKSRNLNNLDLSFNNLS 355 (967)
Q Consensus 318 l~~L~~L~L~~n~l~~~----~~~-~~~~~~L~~L~L~~n~l~ 355 (967)
+++|++|+|+.|.+.+. ++. ...+++|+.|++++|.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45555555555555431 111 122346666666666554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=1.8e-08 Score=110.07 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=84.9
Q ss_pred CcEEEEECCCCCccc-cc-----CCCCCCcCCCCCCeeeCCCCCCCCC--------CCCccccCCCCCCEEeCCCCCCCc
Q 046844 41 GHVIGLDLSWEPIIG-GL-----ENATGLFDLQYLQSLNLGFTLFKGF--------QIPSRLGNLTNLTYLNLSQGGFAG 106 (967)
Q Consensus 41 ~~v~~L~L~~~~l~g-~~-----~~~~~l~~l~~L~~L~Ls~n~~~~~--------~lp~~l~~l~~L~~L~Ls~~~~~~ 106 (967)
.+|+.|.+......| .. ....++.++++|+.|.+........ .++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467777776544332 10 0023455677888887765432110 13344556677777777665211
Q ss_pred cCChhccCCCCCCEEeCCCCCCCccccccccccHHHH-hcCCCCCCEEEcCCc--cC-CCcch-hHHHHh--cCCCCccE
Q 046844 107 EIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLF-LQNLTELTELHLDRV--DL-SASGT-EWCKAL--SFLPNLQV 179 (967)
Q Consensus 107 ~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~--~l-~~~~~-~~~~~l--~~l~~L~~ 179 (967)
.++. +. +++|++|++..|. +. ...+... ...+++|++|+|... .. ..... .....+ ..+|+|++
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~-l~------~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGG-LP------DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSB-CC------HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred eecc-cc-CCCCcEEEEecCC-CC------hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 3333 32 6667777766532 11 0011111 125666666665321 10 01000 011111 23556666
Q ss_pred EEccCCCCCCCCccccc---CCCCCCEEEccCCCCCCcchhh----hcCCCCCCEEeccCCCCCC
Q 046844 180 LSLSGCDLSGPINHYLA---KSRSLSVIRLHYNYGLSSGTEF----LAHLTNLKALDLSECGLQG 237 (967)
Q Consensus 180 L~Ls~~~l~~~~~~~l~---~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~ 237 (967)
|++.+|.+....+..+. .+++|++|+|+.|.+.+..+.. +..+++|+.|++++|.++.
T Consensus 257 L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 66655555432222221 3455555555555544432222 2234555555555555543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=2.5e-06 Score=94.78 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=35.4
Q ss_pred hhcccCccEEEcCCCcCCCCcChhccCCCCCCEEeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCC
Q 046844 363 WEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEMLQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRN 442 (967)
Q Consensus 363 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~ 442 (967)
+..+..|+.+.+..+ ++.....++.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++ .|+...|.+|.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccc-eehhhhhcCCCC
Confidence 444555555555443 22222334444555555554332 11 122223333444444444444433 344444444555
Q ss_pred CCEEECC
Q 046844 443 LYTLDLS 449 (967)
Q Consensus 443 L~~L~Ls 449 (967)
|+.+.+.
T Consensus 312 L~~i~lp 318 (379)
T 4h09_A 312 LSSVTLP 318 (379)
T ss_dssp CCEEECC
T ss_pred CCEEEcC
Confidence 5554443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.52 E-value=6.3e-06 Score=91.47 Aligned_cols=201 Identities=13% Similarity=0.072 Sum_probs=108.7
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCCCEEEccCCCCC------------CCccccccCCCCCCEEEccCCCCCCCCCccc
Q 046844 248 TLETLDLSINQLLQGSLPNFPKNSSLRDLILSHTGLS------------GTLPDSIGNLENLTRVEVSSCNFTGPIPPSM 315 (967)
Q Consensus 248 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 315 (967)
+++.+.+..+ +.......|..+..++...+..+... ......+.....+..+.+...... .....+
T Consensus 136 ~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f 213 (379)
T 4h09_A 136 SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGF 213 (379)
T ss_dssp CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTT
T ss_pred eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeeccc
Confidence 4444444332 23334444555555555555433221 112223344445555554433221 223345
Q ss_pred cCCCCCcEEEccCccccccCccccccCcccEEECCCCCCCCCCChhhhhcccCccEEEcCCCcCCCCcChhccCCCCCCE
Q 046844 316 ANLTQLFHMDFSSNHFFGPIPSLHKSRNLNNLDLSFNNLSGGISSTFWEQLLNLQIVVLGHNSLSGSIPRSLFLLPNLEM 395 (967)
Q Consensus 316 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 395 (967)
..+.+|+.+.+..+--.-....+..+..|+.+.+..+ ++ .+....+.++.+|+.+.+..+ +.......|..+++|+.
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 5566666666654321111112333446777776554 32 344444677777777777543 33333456677778888
Q ss_pred EeCcCCcCccccccccccCCCcccEEEeeCCcCCCCCChhhhccCCCCCEEECCCCcccccc
Q 046844 396 LQLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIFFELRNLYTLDLSSNKFSRLK 457 (967)
Q Consensus 396 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~l~ 457 (967)
+.+.++.++ .++...+..+.+|+.+.+..+ ++ .|....|.+|++|+.+.+..+ ++.+.
T Consensus 291 i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 291 VVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp EEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred ccccccccc-eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 877776665 344445566777888877644 43 677778889999998888654 44443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=3.6e-07 Score=94.31 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=52.2
Q ss_pred CCcceEEECCCCcccC--CCcccccCCCCCcEEECCCCCCcccCCccccCCC--CCCeEeCcCccccccCCc-------c
Q 046844 784 PNIFTSIDFSSNNFEG--PIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLK--EIESLDLSMNNLSGKIPA-------Q 852 (967)
Q Consensus 784 ~~~l~~l~Ls~N~l~g--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~g~ip~-------~ 852 (967)
++.|+.|+||+|++++ .+|..++.+++|+.||||+|+|++. ..+..++ +|+.|+|++|.+++.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5567777777777777 4556666777777777777777764 3344444 777777777777776652 3
Q ss_pred ccCCCCCCeEE
Q 046844 853 LASLNFLSVLN 863 (967)
Q Consensus 853 l~~l~~L~~l~ 863 (967)
+..++.|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55666676665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=5.3e-07 Score=88.59 Aligned_cols=115 Identities=20% Similarity=0.276 Sum_probs=46.9
Q ss_pred hcCCCCCCEEEcCCc-cCCCcch-hHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCcc--
Q 046844 144 LQNLTELTELHLDRV-DLSASGT-EWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSSG-- 215 (967)
Q Consensus 144 l~~l~~L~~L~l~~~-~l~~~~~-~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~-- 215 (967)
+...+.|++|++++| .+.+.+. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.+....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344444444444444 4433221 1223334444444444444444331 1122333344444444444444322
Q ss_pred --hhhhcCCCCCCEEec--cCCCCCCc----cchhccCCCCCCEEeccCCC
Q 046844 216 --TEFLAHLTNLKALDL--SECGLQGK----FPEKILHVPTLETLDLSINQ 258 (967)
Q Consensus 216 --~~~l~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n~ 258 (967)
...+...+.|++|+| ++|.+... +...+...++|++|++++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 223334444555555 44554422 22223333445555544443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=5.3e-07 Score=88.63 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=45.7
Q ss_pred hcCCCCCCEEEcCCccCCCcch-hHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEc--cCCCCCCcc-
Q 046844 144 LQNLTELTELHLDRVDLSASGT-EWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRL--HYNYGLSSG- 215 (967)
Q Consensus 144 l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L--~~n~~~~~~- 215 (967)
+...++|++|++++|.+.+.+. .+...+...+.|++|+|++|.+... +...+...++|++|+| ++|.+....
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3334444444444444433221 1223334445555555555555432 2334445555666666 555555432
Q ss_pred ---hhhhcCCCCCCEEeccCCCCC
Q 046844 216 ---TEFLAHLTNLKALDLSECGLQ 236 (967)
Q Consensus 216 ---~~~l~~l~~L~~L~Ls~n~l~ 236 (967)
...+...+.|++|++++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 233445567777777777654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=1.9e-07 Score=96.44 Aligned_cols=84 Identities=25% Similarity=0.308 Sum_probs=68.0
Q ss_pred EECCCCc---ccCCCcccccCCCCCcEEECCCCCCcc--cCCccccCCCCCCeEeCcCccccccCCccccCCC--CCCeE
Q 046844 790 IDFSSNN---FEGPIPVEMGRFRSLYALNMSHNALTG--SIPSSFGNLKEIESLDLSMNNLSGKIPAQLASLN--FLSVL 862 (967)
Q Consensus 790 l~Ls~N~---l~g~ip~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~l 862 (967)
++++.|+ +.+.++....+++.|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 5677774 333333334678899999999999998 6778889999999999999999986 3445555 89999
Q ss_pred EccCCccccCCCC
Q 046844 863 NLSYNNLVGKIPT 875 (967)
Q Consensus 863 ~ls~N~l~g~ip~ 875 (967)
++++|.+++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998884
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=6.4e-06 Score=78.51 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=50.4
Q ss_pred CCCCEEeCCCCCCCccCChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCC----CCCCEEEcCCcc-CCCcchh
Q 046844 92 TNLTYLNLSQGGFAGEIPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNL----TELTELHLDRVD-LSASGTE 166 (967)
Q Consensus 92 ~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l----~~L~~L~l~~~~-l~~~~~~ 166 (967)
.+|++||+++|.+++.--..+.+|++|++|+|++|..+++... ..+..+ ++|++|++++|. +++.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-------~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-- 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-------ERLSQLENLQKSMLEMEIISCGNVTDKG-- 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-------HHHHTCHHHHHHCCEEEEESCTTCCHHH--
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-------HHHHhcccccCCCCEEEcCCCCcCCHHH--
Confidence 5688888888877766556677788888888888766552211 112222 346666666553 44332
Q ss_pred HHHHhcCCCCccEEEccCCC
Q 046844 167 WCKALSFLPNLQVLSLSGCD 186 (967)
Q Consensus 167 ~~~~l~~l~~L~~L~Ls~~~ 186 (967)
...+..+++|++|++++|.
T Consensus 132 -l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 -IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp -HHHGGGCTTCCEEEEESCT
T ss_pred -HHHHhcCCCCCEEECCCCC
Confidence 3344556666666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.3e-05 Score=76.40 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=40.7
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCCEEEccCCC-CCCcchhhhcCC----CCCCEEeccCCC-CCCccchhccCCCCC
Q 046844 176 NLQVLSLSGCDLSGPINHYLAKSRSLSVIRLHYNY-GLSSGTEFLAHL----TNLKALDLSECG-LQGKFPEKILHVPTL 249 (967)
Q Consensus 176 ~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~L 249 (967)
.|++||+++|.++..-...+..+++|++|+|++|. +++.....++.+ ++|++|+|++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555444433444555555555555553 444333444443 245555555553 443333344455555
Q ss_pred CEEeccCCC
Q 046844 250 ETLDLSINQ 258 (967)
Q Consensus 250 ~~L~L~~n~ 258 (967)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.0007 Score=65.75 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=65.3
Q ss_pred HHHhcCCCCCCEEEcCCc-cCCCcc-hhHHHHhcCCCCccEEEccCCCCCCC----CcccccCCCCCCEEEccCCCCCCc
Q 046844 141 SLFLQNLTELTELHLDRV-DLSASG-TEWCKALSFLPNLQVLSLSGCDLSGP----INHYLAKSRSLSVIRLHYNYGLSS 214 (967)
Q Consensus 141 ~~~l~~l~~L~~L~l~~~-~l~~~~-~~~~~~l~~l~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~ 214 (967)
...+.+-+.|++|+++++ .+.+.+ ..++.++..-+.|++|+|++|.+... +.+.+..-+.|++|+|++|.+...
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 334455566666666664 554433 23455566666777777777776542 234444556677777777766654
Q ss_pred chh----hhcCCCCCCEEeccCCC---CCC----ccchhccCCCCCCEEeccCCC
Q 046844 215 GTE----FLAHLTNLKALDLSECG---LQG----KFPEKILHVPTLETLDLSINQ 258 (967)
Q Consensus 215 ~~~----~l~~l~~L~~L~Ls~n~---l~~----~~~~~l~~l~~L~~L~L~~n~ 258 (967)
... .+..-+.|++|+|++|. +.. .+...+..-+.|++|+++.|.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 333 33344557777776542 221 133344455666666665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.80 E-value=0.0017 Score=63.09 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=47.8
Q ss_pred ccCCCCCCEEeCCCC-CCCcc----CChhccCCCCCCEEeCCCCCCCccccccccccHHHHhcCCCCCCEEEcCCccCCC
Q 046844 88 LGNLTNLTYLNLSQG-GFAGE----IPTEISSLTRLVTLDLSGIVPIEYSYTVWIANLSLFLQNLTELTELHLDRVDLSA 162 (967)
Q Consensus 88 l~~l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~Ls~~~~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~ 162 (967)
+.+-+.|++|+|+++ .+.+. +-..+..-+.|++|+|++|..-. .....+...+..-+.|++|+|++|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd----~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----SEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----HHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh----HHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 344566777777764 55432 23334445566666666643222 2333444445555566666666666554
Q ss_pred cchh-HHHHhcCCCCccEEEccC
Q 046844 163 SGTE-WCKALSFLPNLQVLSLSG 184 (967)
Q Consensus 163 ~~~~-~~~~l~~l~~L~~L~Ls~ 184 (967)
.+.. +..++..-+.|++|+|++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHHhhCCceeEEECCC
Confidence 4322 233444444555555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0043 Score=56.21 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=28.7
Q ss_pred EEECCCCccc-CCCcccccCCCCCcEEECCCCCCcccCCccccCCCCCCeEeCcCccc
Q 046844 789 SIDFSSNNFE-GPIPVEMGRFRSLYALNMSHNALTGSIPSSFGNLKEIESLDLSMNNL 845 (967)
Q Consensus 789 ~l~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l 845 (967)
.+|-++++++ ..+|..+. .+|+.|||++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4556666664 34443322 2455556666655544444455555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.0075 Score=54.57 Aligned_cols=56 Identities=29% Similarity=0.435 Sum_probs=27.4
Q ss_pred EEECCCCcCc-ccCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCCCccc
Q 046844 622 VLNLGRNNLN-GTLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRSNYIS 680 (967)
Q Consensus 622 ~L~Ls~N~l~-~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 680 (967)
.++.+++.++ ..+|.. +. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4444555443 234433 21 23555555555555444445555555555555555543
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=56.61 E-value=5.3 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=8.6
Q ss_pred EeehhHHHHHHHHHHHHHH
Q 046844 926 IAMSIGFAVGFGAVVSPLM 944 (967)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~ 944 (967)
.++++|.++|++++.++.+
T Consensus 14 AGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3444455444444444443
No 166
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=55.61 E-value=12 Score=23.74 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=11.8
Q ss_pred ehhHHHHHHHHHHHHHHHhhhhH
Q 046844 928 MSIGFAVGFGAVVSPLMFSVQVN 950 (967)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~ 950 (967)
+++|.++.|.++-+.+++++.+|
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 45555555555555555554433
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.26 E-value=21 Score=29.87 Aligned_cols=43 Identities=16% Similarity=0.358 Sum_probs=22.7
Q ss_pred cCCCCCCCCCCcccEEeCCCCccCCCCcccccCCCCCCEEECCC
Q 046844 633 TLSDTIFPGDCGLQILDLSGNQLQGVVPKSLANCNMLQVLDLRS 676 (967)
Q Consensus 633 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 676 (967)
.|...+|.++.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+.+
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455555666666666655543 3334445555555555555543
No 168
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.91 E-value=10 Score=30.14 Aligned_cols=30 Identities=7% Similarity=0.003 Sum_probs=14.5
Q ss_pred ehhHHHHHHHHHHHHHHHhhhh-------HHHHHHHH
Q 046844 928 MSIGFAVGFGAVVSPLMFSVQV-------NKWYNDLI 957 (967)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 957 (967)
.+++.++|..+++|++++..++ |+.|.+|-
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFE 48 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFE 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544433 45555554
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.28 E-value=14 Score=31.04 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=39.5
Q ss_pred CCccCCCCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEEccCC
Q 046844 652 GNQLQGVVPKSLANCNMLQVLDLRSNYISDNFPCWLRNASSLQVLVLRSN 701 (967)
Q Consensus 652 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 701 (967)
+..++.+-..+|.+|++|+.+.+-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566666788999999999999875 66667788999999999988764
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=33.46 E-value=21 Score=26.69 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=15.9
Q ss_pred ehhHHHHHHHHHHHHHHH-hhhhH
Q 046844 928 MSIGFAVGFGAVVSPLMF-SVQVN 950 (967)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~-~~~~~ 950 (967)
+++|.++++++.+|+.+| +++||
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHH
Confidence 677778888777777776 44343
No 171
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.40 E-value=24 Score=24.33 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=4.1
Q ss_pred ehhHHHHHH
Q 046844 928 MSIGFAVGF 936 (967)
Q Consensus 928 ~~~~~~~~~ 936 (967)
+++|++.|+
T Consensus 13 IA~gVVgGv 21 (44)
T 2ks1_B 13 IATGMVGAL 21 (44)
T ss_dssp STHHHHHHH
T ss_pred EEeehhHHH
Confidence 444444443
No 172
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.56 E-value=28 Score=19.10 Aligned_cols=11 Identities=27% Similarity=1.120 Sum_probs=7.7
Q ss_pred CCCCcccceeE
Q 046844 26 SSDCCDWSGVR 36 (967)
Q Consensus 26 ~~~~c~w~gv~ 36 (967)
+...|+|+|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 34579999864
Done!