BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046846
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 25/104 (24%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKA-----------------------KRDQEKSKPVL 38
S D++KV G +S +E+E VL++ A KR+ S+ +
Sbjct: 428 SDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSE--I 485
Query: 39 SLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 82
+EL + KD+LAP+K P + D LP+ A GK+ + +L+ Q
Sbjct: 486 LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 20/98 (20%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKAKRDQEKS-KPVLSLQE-LCTW------------- 46
+ D++K GGYK+ A EIE+ LLE R+ + +P L E + W
Sbjct: 405 ATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALG 464
Query: 47 -----AKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
+LAP+K P + D++PRN MGK+ K+ L
Sbjct: 465 TLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 18/101 (17%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQ---EKS-------KPVLSLQELCT 45
D + GG K++A EIE++LL A D+ EKS +P+ ++Q
Sbjct: 435 DQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRF 494
Query: 46 WAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ +A +KLP R+ DSLP A+GKV+KK+L+ LA++
Sbjct: 495 LREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 38 LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
+S Q++ + +LA YKLP ++ +++PRN GK+ K L+ Q +A
Sbjct: 466 VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 38 LSLQELCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
LS L T+ + +LA +K P R F+ D LP+NA+ KV +++L Q+++
Sbjct: 456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 38 LSLQELCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
LS L T+ + +LA +K P R F+ D LP+NA+ KV +++L Q+++
Sbjct: 456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 38 LSLQELCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
LS L T+ + +LA +K P R F+ D LP+NA+ KV +++L Q+++
Sbjct: 456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 38 LSLQELCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
LS L T+ + +LA +K P R F+ D LP+NA+ KV +++L Q+++
Sbjct: 456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 38 LSLQELCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
LS L T+ + +LA +K P R F+ D LP+NA+ KV +++L Q+++
Sbjct: 456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 38 LSLQELCTWAKD-KLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
LS L T+ + +LA +K P R F+ D LP+NA+ KV +++L Q+++
Sbjct: 456 LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 22/105 (20%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAK------------RDQ---------EKSKPVLSLQ- 41
DI+K GYK+ E+ES L++ A R Q + P SL+
Sbjct: 476 DIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKN 535
Query: 42 ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
EL K+ APYK P + LP+ GK+ + E++++ +Q
Sbjct: 536 ELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQSQ 580
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 51 LAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 83
+A YKLP ++ L +SLP A+GKV+KK+L++ L
Sbjct: 506 IAQYKLPDQIKLIESLPLTAVGKVDKKQLRSIL 538
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKAKRDQEK-SKPVLSL-----------------QEL 43
+ D + GG K++A E+E+ LL A D S P L EL
Sbjct: 429 AKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAEL 488
Query: 44 CTWAKDK-LAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ +++ LA YK+P R+ +S P+ +GKV+KK L+ ++ +
Sbjct: 489 KAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 19/104 (18%)
Query: 2 SADIMKVGGYKLSALEIESVLLEKKAKRDQ-----------EKSKPVL-------SLQEL 43
+ D + GG K++A E+E+ LL A D E+S + EL
Sbjct: 429 AKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488
Query: 44 CTWAKDK-LAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ +++ LA YK+P R+ +S P+ +GKV+KK L+ ++ +
Sbjct: 489 KAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+EL + D+LA + +P + D LPRN MG V L+
Sbjct: 459 EELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 498
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 17/91 (18%)
Query: 6 MKVGGYKLSALEIESVLLEKK---------AKRDQEK--------SKPVLSLQELCTWAK 48
+K+ G+++ E+ES+LL+ K QE+ S+ + L++L ++
Sbjct: 433 VKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSS 492
Query: 49 DKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
++L Y +P+ D +P + GK+++K+L
Sbjct: 493 EELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEK------------KAKRDQ-----------EKSKPVLSL 40
D++ V G++L EIES L+ A + Q E+ P L
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 576
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
E+ W + ++ P P L DSLP+ GK+ ++ L+
Sbjct: 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEK------------KAKRDQ-----------EKSKPVLSL 40
D++ V G++L EIES L+ A + Q E+ P L
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 576
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
E+ W + ++ P P L DSLP+ GK+ ++ L+
Sbjct: 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEK------------KAKRDQ-----------EKSKPVLSL 40
D++ V G++L EIES L+ A + Q E+ P L
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 576
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
E+ W + ++ P P L DSLP+ GK+ ++ L+
Sbjct: 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEK------------KAKRDQ-----------EKSKPVLSL 40
D++ V G++L EIES L+ A + Q E+ P L
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 576
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
E+ W + ++ P P L DSLP+ GK+ ++ L+
Sbjct: 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 50 KLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+LA +K P ++ D LPRN GKV K L+
Sbjct: 465 QLAKFKXPKKVIFVDDLPRNTXGKVQKNVLR 495
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 24/103 (23%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-------------KRDQEKSKPVLSLQ--------- 41
DI+ GY++ E+E+ L+E A + + K+ VL+ Q
Sbjct: 457 DIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQL 516
Query: 42 --ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 82
EL K APYK P ++ +LP+ GK+ + +L+++
Sbjct: 517 TKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 24/103 (23%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA-------------KRDQEKSKPVLSLQ--------- 41
DI+ GY++ E+E+ L+E A + + K+ VL+ Q
Sbjct: 457 DIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQL 516
Query: 42 --ELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQ 82
EL K APYK P ++ +LP+ GK+ + +L+++
Sbjct: 517 TKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEK------------KAKRDQ-----------EKSKPVLSL 40
D++ V G++L EIES L+ A + Q E+ P L
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 576
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
E+ W + ++ P P L DSLP+ GK+ ++ L+
Sbjct: 577 AEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEK------------KAKRDQ-----------EKSKPVLSL 40
D++ V G++L EIES L+ A + Q E+ P L
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 576
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
E+ W ++ P P L DSLP+ GK+ ++ L+
Sbjct: 577 AEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 32.3 bits (72), Expect = 0.067, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 4 DIMKVGGYKLSALEIESVLLEKK--------AKRDQEKSKPVLS---LQELCTWA----- 47
D++ V G++LS EIE+ ++E D + V + L+ +W+
Sbjct: 527 DVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDD 586
Query: 48 -------------KDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86
+ + P+ P + L D LP+ GK+ ++ L+ LA +
Sbjct: 587 ELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 32.0 bits (71), Expect = 0.095, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 21/102 (20%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKA--------KRDQEKS---------KP----VLSLQE 42
+++K GY ++ E+E++L + +A K D+E KP + ++
Sbjct: 440 EVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEED 499
Query: 43 LCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
+ W +++++ YK + + LPR A GK+ ++ L+ + A
Sbjct: 500 IIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEA 541
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 24/100 (24%)
Query: 4 DIMKVGGYKLSALEIESVLLEK------------KAKRDQ-----------EKSKPVLSL 40
D++ V G++L EIES L+ A + Q E+ P L
Sbjct: 518 DVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL-Y 576
Query: 41 QELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
E+ W + ++ P P L DSLP+ G + ++ L+
Sbjct: 577 AEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 48 KDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQL 83
KD + Y +P++ DSLP GK++ K L N++
Sbjct: 475 KDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEV 510
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 50 KLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+LA + +P + D LPRN MG V L+
Sbjct: 465 QLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 50 KLAPYKLPTRLFLWDSLPRNAMGKVNKKELK 80
+LA + +P + D LPRN MG V L+
Sbjct: 465 QLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 4 DIMKVGGYKLSALEIESVLLEKKAKRD-------QEK----------SKPVLSLQELCTW 46
D +K+ G+++ EIE L E +D E ++ LS +++
Sbjct: 862 DQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAH 921
Query: 47 AKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL----KNQLAAQ 86
K +L Y +P D LP GKVNK+ L ++QLA +
Sbjct: 922 LKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEE 965
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 4 DIMKVGGYKLSALEIESVLLEK---------KAKRDQEKSKPV----------LSLQELC 44
+++K G++++ E+E++L+ K + PV LS ++
Sbjct: 482 ELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVK 541
Query: 45 TWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLA 84
+ ++ YK ++F +S+P+ GK+ +K+L+ +LA
Sbjct: 542 QFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLA 581
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 34 SKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKEL 79
S+ +S +L + LA YK+P D+LP + GK+ + +L
Sbjct: 446 SESDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
YK R+F +++P+ GK+ +K LK +LA
Sbjct: 504 YKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 49 DKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
++L Y +P + S+P GKV++K+L +++ A
Sbjct: 468 ERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 49 DKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85
++L Y +P + S+P GKV++K+L +++ A
Sbjct: 468 ERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTA 504
>pdb|2DJ6|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DJ6|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3
pdb|2DTT|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|C Chain C, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|D Chain D, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|E Chain E, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
pdb|2DTT|F Chain F, Crystal Structure Of 6-Pyruvoyl Tetrahydrobiopterin
Synthase From Pyrococcus Horikoshii Ot3 Complexed With
(1'r,2's)-Biopterin
Length = 115
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 10 GYKLSALEIESVLLEKKAKRDQEKSKPVL---SLQELCTWA----KDKLAPYKLPTRLFL 62
GY + LE+ ++ E + D + + + + W +DKL PY R+ L
Sbjct: 44 GYVMDFLELRKIVEEITKELDHRNLNNIFENPTTENIALWIGERIRDKLPPYVKLKRVVL 103
Query: 63 WDSLPRNAMGKVNKKELK 80
W+ GK N EL+
Sbjct: 104 WE-------GKDNGVELE 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,266,472
Number of Sequences: 62578
Number of extensions: 70850
Number of successful extensions: 146
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 48
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)