Query 046846
Match_columns 87
No_of_seqs 153 out of 1596
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1176 Acyl-CoA synthetase [L 99.9 8.7E-22 1.9E-26 131.9 8.8 85 1-85 429-532 (537)
2 TIGR01217 ac_ac_CoA_syn acetoa 99.8 2.9E-19 6.2E-24 122.0 9.5 85 1-85 520-626 (652)
3 PRK07824 O-succinylbenzoic aci 99.8 6.2E-19 1.3E-23 112.8 10.0 85 1-85 254-357 (358)
4 PRK03584 acetoacetyl-CoA synth 99.8 6.2E-19 1.3E-23 120.1 9.4 85 1-85 519-625 (655)
5 PRK07445 O-succinylbenzoic aci 99.8 1E-18 2.3E-23 115.1 10.1 85 1-85 345-447 (452)
6 COG0318 CaiC Acyl-CoA syntheta 99.8 8.6E-19 1.9E-23 117.5 9.3 85 1-85 422-527 (534)
7 KOG1177 Long chain fatty acid 99.8 6.9E-19 1.5E-23 115.6 8.3 85 1-85 482-587 (596)
8 COG0365 Acs Acyl-coenzyme A sy 99.8 7.4E-19 1.6E-23 117.7 8.3 84 1-84 417-521 (528)
9 PLN02654 acetate-CoA ligase 99.8 1.5E-18 3.4E-23 118.7 9.5 85 1-85 534-640 (666)
10 PTZ00237 acetyl-CoA synthetase 99.8 2E-18 4.4E-23 117.8 9.6 85 1-85 513-623 (647)
11 TIGR02316 propion_prpE propion 99.8 1.6E-18 3.4E-23 117.8 8.1 85 1-85 493-604 (628)
12 PRK07788 acyl-CoA synthetase; 99.8 2.4E-18 5.2E-23 115.0 8.7 82 1-82 448-548 (549)
13 KOG1175 Acyl-CoA synthetase [L 99.8 8.9E-19 1.9E-23 118.5 6.5 86 1-86 496-603 (626)
14 PRK08279 long-chain-acyl-CoA s 99.8 2E-18 4.3E-23 116.5 7.1 84 1-84 460-563 (600)
15 PLN03051 acyl-activating enzym 99.8 7.8E-18 1.7E-22 111.8 9.4 85 1-85 378-491 (499)
16 PRK08043 bifunctional acyl-[ac 99.8 7.5E-18 1.6E-22 116.0 9.5 85 1-85 612-713 (718)
17 TIGR02188 Ac_CoA_lig_AcsA acet 99.8 9E-18 2E-22 113.9 9.6 85 1-85 496-602 (625)
18 PLN02574 4-coumarate--CoA liga 99.7 1.3E-17 2.9E-22 111.9 9.6 86 1-86 451-555 (560)
19 PRK00174 acetyl-CoA synthetase 99.7 1.1E-17 2.4E-22 113.7 9.3 85 1-85 504-610 (637)
20 PRK07529 AMP-binding domain pr 99.7 2.2E-17 4.8E-22 112.4 10.0 85 1-85 466-570 (632)
21 PRK10524 prpE propionyl-CoA sy 99.7 1.9E-17 4.1E-22 112.4 9.3 85 1-85 494-605 (629)
22 PRK05677 long-chain-fatty-acid 99.7 3.5E-17 7.7E-22 109.8 9.6 85 1-85 454-557 (562)
23 PRK06155 crotonobetaine/carnit 99.7 3.6E-17 7.8E-22 109.5 9.6 85 1-85 421-524 (542)
24 PRK07008 long-chain-fatty-acid 99.7 4.5E-17 9.7E-22 108.9 9.9 85 1-85 430-533 (539)
25 PRK07868 acyl-CoA synthetase; 99.7 2.7E-17 5.9E-22 116.7 9.2 81 1-82 857-955 (994)
26 PRK05851 long-chain-fatty-acid 99.7 1.4E-17 3.1E-22 111.1 6.9 85 1-85 416-522 (525)
27 PRK06334 long chain fatty acid 99.7 2.9E-17 6.3E-22 110.1 8.3 85 1-85 431-535 (539)
28 PRK06060 acyl-CoA synthetase; 99.7 3.6E-17 7.8E-22 112.4 8.9 83 1-83 386-490 (705)
29 PLN02246 4-coumarate--CoA liga 99.7 4.6E-17 9.9E-22 108.7 9.1 85 1-85 433-536 (537)
30 COG1021 EntE Peptide arylation 99.7 1.2E-17 2.7E-22 108.1 5.9 85 1-85 435-538 (542)
31 PRK07867 acyl-CoA synthetase; 99.7 5.5E-17 1.2E-21 108.5 9.3 85 1-85 402-507 (529)
32 PRK09029 O-succinylbenzoic aci 99.7 5.6E-17 1.2E-21 106.5 9.0 85 1-85 352-453 (458)
33 PRK07470 acyl-CoA synthetase; 99.7 1E-16 2.3E-21 106.6 10.2 86 1-86 415-519 (528)
34 PRK08314 long-chain-fatty-acid 99.7 8E-17 1.7E-21 107.4 9.6 85 1-85 437-542 (546)
35 PRK09088 acyl-CoA synthetase; 99.7 1.1E-16 2.5E-21 105.5 10.1 85 1-85 382-485 (488)
36 PLN03052 acetate--CoA ligase; 99.7 6.9E-17 1.5E-21 111.8 9.0 85 1-85 610-721 (728)
37 PLN03102 acyl-activating enzym 99.7 1.2E-16 2.5E-21 107.9 9.8 85 1-85 441-554 (579)
38 PRK04319 acetyl-CoA synthetase 99.7 1.1E-16 2.4E-21 107.6 9.7 84 1-84 453-558 (570)
39 PRK05852 acyl-CoA synthetase; 99.7 8.4E-17 1.8E-21 107.3 8.7 85 1-85 429-532 (534)
40 PLN02860 o-succinylbenzoate-Co 99.7 1.3E-16 2.9E-21 107.1 9.3 85 1-85 435-554 (563)
41 PRK13388 acyl-CoA synthetase; 99.7 1.4E-16 3E-21 106.7 9.2 85 1-85 401-506 (540)
42 PRK06839 acyl-CoA synthetase; 99.7 2.1E-16 4.7E-21 104.1 9.9 85 1-85 392-495 (496)
43 PRK07638 acyl-CoA synthetase; 99.7 1.3E-16 2.9E-21 105.3 8.9 86 1-86 382-482 (487)
44 PRK05620 long-chain-fatty-acid 99.7 9.4E-17 2E-21 108.1 8.3 86 1-86 451-558 (576)
45 PRK06710 long-chain-fatty-acid 99.7 1.8E-16 3.9E-21 106.3 9.7 85 1-85 452-555 (563)
46 PRK06145 acyl-CoA synthetase; 99.7 1.7E-16 3.7E-21 104.8 9.4 84 1-84 394-496 (497)
47 PRK06018 putative acyl-CoA syn 99.7 2.1E-16 4.6E-21 105.6 9.9 85 1-85 431-534 (542)
48 PRK05605 long-chain-fatty-acid 99.7 2.1E-16 4.5E-21 106.2 9.7 85 1-85 466-569 (573)
49 PRK08308 acyl-CoA synthetase; 99.7 1.5E-16 3.3E-21 103.5 8.7 79 1-79 312-407 (414)
50 PRK07798 acyl-CoA synthetase; 99.7 1.5E-16 3.3E-21 105.4 8.8 85 1-85 429-532 (533)
51 PRK13382 acyl-CoA synthetase; 99.7 1.5E-16 3.2E-21 106.5 8.5 81 1-81 437-536 (537)
52 PRK12583 acyl-CoA synthetase; 99.7 3.9E-16 8.4E-21 104.3 10.1 85 1-85 449-552 (558)
53 PRK13295 cyclohexanecarboxylat 99.7 4.7E-16 1E-20 104.1 10.2 86 1-86 440-545 (547)
54 PRK07514 malonyl-CoA synthase; 99.7 4.9E-16 1.1E-20 102.7 9.9 85 1-85 398-501 (504)
55 PRK06814 acylglycerophosphoeth 99.7 3.9E-16 8.3E-21 111.4 10.0 85 1-85 1031-1132(1140)
56 PRK06188 acyl-CoA synthetase; 99.7 4.6E-16 9.9E-21 103.5 9.7 85 1-85 414-517 (524)
57 PRK08316 acyl-CoA synthetase; 99.7 6.4E-16 1.4E-20 102.3 10.1 85 1-85 416-519 (523)
58 PRK07786 long-chain-fatty-acid 99.7 7.7E-16 1.7E-20 103.0 10.3 85 1-85 420-524 (542)
59 PRK13390 acyl-CoA synthetase; 99.7 2.5E-16 5.5E-21 104.2 7.9 80 1-80 400-501 (501)
60 TIGR03098 ligase_PEP_1 acyl-Co 99.7 3.7E-16 8E-21 103.4 8.4 81 1-81 415-514 (515)
61 PRK03640 O-succinylbenzoic aci 99.7 7E-16 1.5E-20 101.5 9.5 85 1-85 381-482 (483)
62 PRK12406 long-chain-fatty-acid 99.7 9.3E-16 2E-20 101.7 10.0 85 1-85 400-503 (509)
63 TIGR01734 D-ala-DACP-lig D-ala 99.7 4.3E-16 9.4E-21 102.9 8.4 84 1-84 394-501 (502)
64 TIGR02372 4_coum_CoA_lig 4-cou 99.7 5.9E-16 1.3E-20 100.8 8.3 75 1-75 296-386 (386)
65 PLN02330 4-coumarate--CoA liga 99.7 4.7E-16 1E-20 104.1 8.0 85 1-85 438-541 (546)
66 PRK08315 AMP-binding domain pr 99.7 1.2E-15 2.5E-20 102.1 9.8 85 1-85 448-551 (559)
67 PRK06178 acyl-CoA synthetase; 99.7 1E-15 2.2E-20 102.7 9.4 84 1-85 463-565 (567)
68 PRK06187 long-chain-fatty-acid 99.7 1.4E-15 3.1E-20 100.5 9.9 87 1-87 416-521 (521)
69 PRK12492 long-chain-fatty-acid 99.7 7.9E-16 1.7E-20 103.4 8.8 82 1-82 462-561 (562)
70 PRK08008 caiC putative crotono 99.7 5.7E-16 1.2E-20 102.8 7.9 80 1-80 419-517 (517)
71 TIGR03443 alpha_am_amid L-amin 99.7 4.8E-16 1E-20 112.6 8.0 81 1-81 699-824 (1389)
72 PRK08751 putative long-chain f 99.7 7.2E-16 1.6E-20 103.3 8.2 82 1-82 458-557 (560)
73 PRK06164 acyl-CoA synthetase; 99.7 1.7E-15 3.8E-20 101.0 10.0 85 1-85 427-532 (540)
74 PRK09274 peptide synthase; Pro 99.6 6E-16 1.3E-20 103.6 7.6 85 1-85 441-548 (552)
75 PRK05857 acyl-CoA synthetase; 99.6 9.6E-16 2.1E-20 102.6 8.5 85 1-85 423-531 (540)
76 PRK12316 peptide synthase; Pro 99.6 5.1E-16 1.1E-20 121.4 8.0 82 1-82 907-1003(5163)
77 PRK07769 long-chain-fatty-acid 99.6 6.5E-16 1.4E-20 105.1 7.6 85 1-85 484-614 (631)
78 PRK12467 peptide synthase; Pro 99.6 4.7E-16 1E-20 120.1 7.4 82 1-82 3492-3591(3956)
79 TIGR02275 DHB_AMP_lig 2,3-dihy 99.6 8.8E-16 1.9E-20 102.3 7.8 80 1-80 429-527 (527)
80 PRK07656 long-chain-fatty-acid 99.6 1.7E-15 3.6E-20 100.2 8.9 81 1-81 413-512 (513)
81 PRK13391 acyl-CoA synthetase; 99.6 3.2E-15 7E-20 99.3 10.0 86 1-86 403-510 (511)
82 PRK10946 entE enterobactin syn 99.6 2.1E-15 4.6E-20 100.9 8.9 85 1-85 430-532 (536)
83 PRK07059 Long-chain-fatty-acid 99.6 1.9E-15 4.1E-20 101.3 8.8 82 1-82 456-555 (557)
84 TIGR03208 cyc_hxne_CoA_lg cycl 99.6 1.3E-15 2.9E-20 101.7 8.0 80 1-80 438-537 (538)
85 PRK13383 acyl-CoA synthetase; 99.6 2.5E-15 5.3E-20 100.0 9.0 80 1-80 417-515 (516)
86 PRK07787 acyl-CoA synthetase; 99.6 1.9E-15 4.1E-20 99.6 8.4 81 1-81 371-469 (471)
87 PRK12316 peptide synthase; Pro 99.6 9.2E-16 2E-20 120.0 7.6 82 1-82 2402-2501(5163)
88 PRK08276 long-chain-fatty-acid 99.6 4.2E-15 9E-20 98.4 9.7 85 1-85 390-496 (502)
89 PRK12476 putative fatty-acid-- 99.6 1.6E-15 3.6E-20 102.9 7.6 86 1-86 496-607 (612)
90 PRK10252 entF enterobactin syn 99.6 2.1E-15 4.6E-20 108.6 8.3 81 1-81 858-963 (1296)
91 PRK08633 2-acyl-glycerophospho 99.6 2.5E-15 5.3E-20 107.0 8.5 85 1-85 1040-1143(1146)
92 PRK08974 long-chain-fatty-acid 99.6 5E-15 1.1E-19 99.4 9.5 85 1-85 453-555 (560)
93 PRK04813 D-alanine--poly(phosp 99.6 3E-15 6.5E-20 98.8 8.2 84 1-84 396-502 (503)
94 TIGR01923 menE O-succinylbenzo 99.6 2.2E-15 4.8E-20 98.0 7.1 79 1-79 341-436 (436)
95 TIGR03205 pimA dicarboxylate-- 99.6 4.9E-15 1.1E-19 99.1 8.3 80 1-80 442-541 (541)
96 PRK08162 acyl-CoA synthetase; 99.6 1.4E-14 2.9E-19 96.9 9.7 84 1-85 437-539 (545)
97 PRK05691 peptide synthase; Val 99.6 5.9E-15 1.3E-19 114.7 8.4 81 1-81 1526-1624(4334)
98 PRK06087 short chain acyl-CoA 99.6 1.3E-14 2.7E-19 97.1 8.9 85 1-85 431-536 (547)
99 PRK09192 acyl-CoA synthetase; 99.6 5.9E-15 1.3E-19 99.5 7.3 85 1-85 459-566 (579)
100 PRK05691 peptide synthase; Val 99.6 4.4E-15 9.4E-20 115.4 6.9 82 1-82 4123-4225(4334)
101 PRK12467 peptide synthase; Pro 99.6 8.7E-15 1.9E-19 113.3 8.3 82 1-82 911-1015(3956)
102 PRK09188 serine/threonine prot 99.6 1.6E-14 3.4E-19 93.6 8.2 74 9-84 234-327 (365)
103 PLN02479 acetate-CoA ligase 99.6 2.8E-14 6.1E-19 96.1 9.1 84 1-85 451-558 (567)
104 TIGR02262 benz_CoA_lig benzoat 99.5 3.5E-14 7.6E-19 94.2 7.5 81 1-81 405-507 (508)
105 PRK05850 acyl-CoA synthetase; 99.5 2.2E-13 4.7E-18 91.8 7.3 86 1-86 457-569 (578)
106 PLN02736 long-chain acyl-CoA s 99.4 1.3E-13 2.8E-18 94.4 5.3 85 1-85 508-641 (651)
107 PRK07768 long-chain-fatty-acid 99.4 5.5E-13 1.2E-17 89.2 6.3 84 1-84 435-544 (545)
108 KOG1178 Non-ribosomal peptide 99.3 2.9E-12 6.4E-17 91.0 5.8 82 1-82 475-576 (1032)
109 PLN02387 long-chain-fatty-acid 99.1 2E-10 4.3E-15 79.6 7.4 85 1-85 556-689 (696)
110 PLN02614 long-chain acyl-CoA s 99.1 9.1E-11 2E-15 80.9 5.6 85 1-85 517-649 (666)
111 PLN02861 long-chain-fatty-acid 99.1 2E-10 4.3E-15 79.1 7.2 85 1-85 514-646 (660)
112 PF13193 AMP-binding_C: AMP-bi 99.1 1E-10 2.2E-15 60.0 3.2 57 17-73 1-73 (73)
113 PRK08180 feruloyl-CoA synthase 99.0 4.4E-10 9.6E-15 76.7 3.4 85 1-85 465-596 (614)
114 TIGR02155 PA_CoA_ligase phenyl 98.9 2.9E-09 6.3E-14 69.9 6.5 73 1-77 316-418 (422)
115 PTZ00216 acyl-CoA synthetase; 98.9 2.4E-09 5.3E-14 74.3 6.2 85 1-85 557-691 (700)
116 PLN02430 long-chain-fatty-acid 98.9 3.1E-09 6.8E-14 73.4 6.0 85 1-85 514-646 (660)
117 KOG1179 Very long-chain acyl-C 98.9 1.5E-09 3.2E-14 73.4 3.0 82 1-82 509-610 (649)
118 PRK12582 acyl-CoA synthetase; 98.8 9.5E-09 2.1E-13 70.4 5.2 85 1-85 477-607 (624)
119 PTZ00342 acyl-CoA synthetase; 98.7 1.1E-07 2.5E-12 66.8 8.4 85 1-85 591-734 (746)
120 PF14535 AMP-binding_C_2: AMP- 98.3 4.9E-07 1.1E-11 48.7 1.8 66 10-76 1-91 (96)
121 TIGR03335 F390_ftsA coenzyme F 98.1 1.1E-05 2.3E-10 53.9 6.5 25 1-25 328-352 (445)
122 PTZ00297 pantothenate kinase; 98.1 2.6E-05 5.5E-10 58.5 8.0 85 1-85 857-995 (1452)
123 KOG1256 Long-chain acyl-CoA sy 97.7 7.4E-05 1.6E-09 52.3 4.9 85 1-85 548-680 (691)
124 TIGR01733 AA-adenyl-dom amino 97.6 7.6E-05 1.6E-09 48.4 3.1 28 1-28 376-403 (408)
125 COG1541 PaaK Coenzyme F390 syn 97.5 0.0005 1.1E-08 46.1 6.4 28 1-28 332-359 (438)
126 KOG1180 Acyl-CoA synthetase [L 97.4 0.00011 2.5E-09 50.4 2.2 85 1-85 536-669 (678)
127 COG1022 FAA1 Long-chain acyl-C 96.8 0.0011 2.4E-08 46.3 2.5 28 1-28 470-498 (613)
128 KOG3628 Predicted AMP-binding 94.0 0.17 3.7E-06 38.1 5.1 84 3-86 1252-1352(1363)
129 TIGR02304 aden_form_hyp probab 81.2 6.1 0.00013 27.0 5.2 28 1-28 325-358 (430)
130 PF06092 DUF943: Enterobacteri 70.9 2.9 6.2E-05 24.7 1.3 18 59-76 42-59 (157)
131 PF04784 DUF547: Protein of un 66.4 9.4 0.0002 21.1 2.8 22 4-25 50-71 (117)
132 smart00426 TEA TEA domain. 61.9 6.3 0.00014 20.0 1.4 17 9-25 1-17 (68)
133 COG0075 Serine-pyruvate aminot 58.2 36 0.00078 23.2 4.8 42 9-50 113-160 (383)
134 PRK10343 RNA-binding protein Y 58.1 23 0.0005 19.2 3.2 48 5-52 21-71 (97)
135 COG1534 Predicted RNA-binding 56.8 28 0.00061 18.9 3.4 39 15-53 33-71 (97)
136 PF08002 DUF1697: Protein of u 54.5 9.7 0.00021 21.8 1.5 21 6-26 11-32 (137)
137 PF00036 EF-hand_1: EF hand; 54.0 17 0.00036 14.8 2.0 21 65-85 8-28 (29)
138 PF11848 DUF3368: Domain of un 51.8 18 0.00038 16.7 1.9 19 7-25 29-47 (48)
139 TIGR00253 RNA_bind_YhbY putati 50.9 37 0.00079 18.3 3.3 37 16-52 33-69 (95)
140 COG3918 Predicted membrane pro 46.2 22 0.00048 20.2 2.0 19 64-82 63-81 (153)
141 PF13180 PDZ_2: PDZ domain; PD 43.3 45 0.00098 16.7 3.2 23 3-25 35-59 (82)
142 COG1504 Uncharacterized conser 40.5 28 0.00062 19.5 1.9 22 9-30 43-66 (121)
143 cd00986 PDZ_LON_protease PDZ d 40.2 50 0.0011 16.3 3.5 17 8-24 34-51 (79)
144 TIGR00334 5S_RNA_mat_M5 ribonu 37.9 93 0.002 18.8 4.6 47 4-52 24-72 (174)
145 PF07338 DUF1471: Protein of u 34.7 54 0.0012 15.7 2.2 20 5-24 7-26 (56)
146 COG3753 Uncharacterized protei 34.5 26 0.00056 20.3 1.2 41 11-53 77-117 (143)
147 PF13624 SurA_N_3: SurA N-term 34.5 67 0.0014 18.1 3.0 21 4-24 41-61 (154)
148 COG1781 PyrI Aspartate carbamo 34.1 49 0.0011 19.6 2.3 26 2-27 55-80 (153)
149 KOG1387 Glycosyltransferase [C 33.7 1.6E+02 0.0035 20.3 5.3 55 9-63 58-113 (465)
150 cd05026 S-100Z S-100Z: S-100Z 33.3 18 0.00039 19.0 0.4 70 15-84 2-80 (93)
151 PF13202 EF-hand_5: EF hand; P 32.9 40 0.00087 13.1 1.7 18 65-82 7-24 (25)
152 PF08976 DUF1880: Domain of un 32.9 18 0.0004 20.3 0.4 22 63-84 13-34 (118)
153 COG4100 Cystathionine beta-lya 32.6 35 0.00077 22.9 1.7 21 64-84 143-163 (416)
154 PF13342 Toprim_Crpt: C-termin 32.2 54 0.0012 16.1 2.0 18 8-25 11-28 (62)
155 PF13405 EF-hand_6: EF-hand do 31.5 46 0.00099 13.3 2.0 20 65-84 8-27 (31)
156 PF13453 zf-TFIIB: Transcripti 31.1 57 0.0012 14.3 1.8 16 8-23 25-40 (41)
157 PF09014 Sushi_2: Beta-2-glyco 30.9 70 0.0015 17.0 2.4 24 3-26 10-33 (85)
158 PF07308 DUF1456: Protein of u 30.2 14 0.0003 18.6 -0.4 20 6-25 23-42 (68)
159 cd05023 S-100A11 S-100A11: S-1 30.0 18 0.00039 19.0 0.1 69 16-84 2-79 (89)
160 PF12503 CMV_1a_C: Cucumber mo 29.4 12 0.00026 19.6 -0.6 23 1-23 26-51 (85)
161 COG2247 LytB Putative cell wal 29.0 1.7E+02 0.0036 19.7 4.3 62 3-64 77-139 (337)
162 PF03321 GH3: GH3 auxin-respon 29.0 45 0.00097 23.5 1.8 25 1-25 394-418 (528)
163 PF04558 tRNA_synt_1c_R1: Glut 28.6 48 0.001 19.7 1.7 16 10-25 114-129 (164)
164 COG0399 WecE Predicted pyridox 27.7 80 0.0017 21.4 2.8 42 9-50 106-148 (374)
165 PF01985 CRS1_YhbY: CRS1 / Yhb 27.7 54 0.0012 17.0 1.7 49 3-51 17-68 (84)
166 PF01948 PyrI: Aspartate carba 27.3 57 0.0012 17.7 1.7 26 2-27 52-77 (96)
167 COG3592 Uncharacterized conser 27.0 66 0.0014 16.4 1.8 17 11-27 50-66 (74)
168 PF02680 DUF211: Uncharacteriz 25.9 89 0.0019 17.0 2.3 23 6-28 51-73 (95)
169 TIGR02925 cis_trans_EpsD pepti 24.7 1.3E+02 0.0028 18.4 3.2 21 5-25 29-49 (232)
170 COG5126 FRQ1 Ca2+-binding prot 24.6 1.6E+02 0.0034 17.5 3.3 49 36-84 70-119 (160)
171 PF03953 Tubulin_C: Tubulin C- 24.5 77 0.0017 17.5 2.0 18 7-25 56-73 (126)
172 PF07697 7TMR-HDED: 7TM-HD ext 23.8 87 0.0019 18.8 2.3 20 1-20 194-213 (222)
173 KOG0031 Myosin regulatory ligh 23.6 1.8E+02 0.0039 17.5 3.5 24 5-28 57-80 (171)
174 cd00991 PDZ_archaeal_metallopr 23.4 1.1E+02 0.0024 15.2 3.4 22 4-25 32-55 (79)
175 PF10264 Stork_head: Winged he 23.3 1.3E+02 0.0028 15.8 2.9 26 33-58 25-50 (80)
176 PF00403 HMA: Heavy-metal-asso 22.5 1E+02 0.0022 14.3 3.8 34 16-49 14-58 (62)
177 PF12757 DUF3812: Protein of u 21.8 86 0.0019 17.7 1.8 22 4-25 59-81 (126)
178 PRK00893 aspartate carbamoyltr 21.1 86 0.0019 18.5 1.8 26 2-27 54-79 (152)
179 PF12512 DUF3717: Protein of u 21.0 87 0.0019 16.0 1.6 14 12-25 3-16 (71)
180 PF12419 DUF3670: SNF2 Helicas 20.7 1.8E+02 0.0039 16.6 3.8 21 6-26 77-97 (141)
181 COG1888 Uncharacterized protei 20.6 1.6E+02 0.0035 15.9 2.5 23 6-28 53-75 (97)
182 CHL00103 rpl35 ribosomal prote 20.5 28 0.00061 17.4 -0.3 13 66-78 14-26 (65)
183 TIGR01713 typeII_sec_gspC gene 20.4 2E+02 0.0043 18.4 3.4 24 2-25 211-236 (259)
184 TIGR00240 ATCase_reg aspartate 20.2 93 0.002 18.4 1.8 25 2-26 52-76 (150)
No 1
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.87 E-value=8.7e-22 Score=131.89 Aligned_cols=85 Identities=31% Similarity=0.500 Sum_probs=77.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc-------------------ccccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK-------------------RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v-------------------~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|++|+|.|||++|..||.| .+....+...+.++|.++|+.+++.|+.|..+.
T Consensus 429 R~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~ 508 (537)
T KOG1176|consen 429 RSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVV 508 (537)
T ss_pred chhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEE
Confidence 8999999999999999999999999966 122234678889999999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|++++|+|++||+.|+.|++.+..
T Consensus 509 Fvd~lPKs~~GKi~R~~lr~~~~~ 532 (537)
T KOG1176|consen 509 FVDELPKTPNGKILRRKLRDIAKK 532 (537)
T ss_pred EeccCCCCCcchHHHHHHHHHHHh
Confidence 999999999999999999999875
No 2
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.80 E-value=2.9e-19 Score=122.01 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=71.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+ .++|.++++++|++|++|.
T Consensus 520 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 599 (652)
T TIGR01217 520 RSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPD 599 (652)
T ss_pred cccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCC
Confidence 89999999999999999999999999651 1111122222 2579999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++++||+|++||++|+.|++.+.+
T Consensus 600 ~i~~v~~lP~T~sGKi~r~~Lr~~~~~ 626 (652)
T TIGR01217 600 EIIEVPGIPHTLTGKRVEVAVKRVLQG 626 (652)
T ss_pred EEEECCCCCCCCCccChHHHHHHHHcC
Confidence 999999999999999999999998754
No 3
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.80 E-value=6.2e-19 Score=112.76 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=73.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+||++|.+|+|.+||.+|.+||.|. +....+.....+++..++++.++.|++|..+.
T Consensus 254 R~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~ 333 (358)
T PRK07824 254 RADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELH 333 (358)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCEEE
Confidence 88999999999999999999999999651 01112234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.|.+
T Consensus 334 ~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 334 VVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred EecCCCCCCCccccHHHHHHHhhc
Confidence 999999999999999999998864
No 4
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.79 E-value=6.2e-19 Score=120.15 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=71.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+...+ .+++.++++++|++|++|.
T Consensus 519 R~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~ 598 (655)
T PRK03584 519 RSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPD 598 (655)
T ss_pred eccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCC
Confidence 899999999999999999999999996610 011111222 2578999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.|.+++++|+|+|||++|+.|++.+.+
T Consensus 599 ~i~~v~~lP~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 599 KIIAVPDIPRTLSGKKVELPVKKLLHG 625 (655)
T ss_pred EEEECCCCCCCCCccchHHHHHHHHcC
Confidence 999999999999999999999998754
No 5
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.79 E-value=1e-18 Score=115.12 Aligned_cols=85 Identities=29% Similarity=0.464 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc---cc---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR---DQ---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~---~~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|+||+|.|||++|.+||.|. +. .......+.+++.++++++|+.|++|..+.+
T Consensus 345 R~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~ 424 (452)
T PRK07445 345 RNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLSPFKQPKHWIP 424 (452)
T ss_pred ecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCCCHHHHHHHHHHhCCcccCCeEEEE
Confidence 88999999999999999999999999661 00 0112234578899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++|+|++||++|..|++.+.+
T Consensus 425 v~~lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 425 VPQLPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred ecCCCCCCCcccCHHHHHHHHHH
Confidence 99999999999999999998865
No 6
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=8.6e-19 Score=117.54 Aligned_cols=85 Identities=33% Similarity=0.501 Sum_probs=73.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCC--CCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSK--PVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|.||+|+++|+||+|.|||.++.+||.|. +....+ ...+.+++.++|+.+++.|+.|+.
T Consensus 422 R~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~ 501 (534)
T COG0318 422 RLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRI 501 (534)
T ss_pred ccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeE
Confidence 78999999999999999999999999551 011111 233789999999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++++|+|++||++|+.|++.+..
T Consensus 502 v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 502 VVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred EEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999998764
No 7
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=99.79 E-value=6.9e-19 Score=115.59 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=73.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCC--CCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKP--VLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+||||+.||+||+|.|||+.|.+||.|. +....+. ..+.+.|+.+|+.+++-|++|++
T Consensus 482 RskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky 561 (596)
T KOG1177|consen 482 RSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKY 561 (596)
T ss_pred cccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcE
Confidence 78999999999999999999999999551 1111222 25788999999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+|.+|||++.+++++..+
T Consensus 562 ~vf~~~FPlT~tGKIqKFeir~~~k~ 587 (596)
T KOG1177|consen 562 FVFVDEFPLTTTGKIQKFEIREMSKG 587 (596)
T ss_pred EEEeccCcccccccchhHHHHHHHHh
Confidence 99999999999999999999998763
No 8
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.78 E-value=7.4e-19 Score=117.66 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=70.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCC--CCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPV--LSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~--~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|.||+||+.|++|+|.|||++|.+||.|. +....+.. ...++|.+++++.+.++..|+.
T Consensus 417 R~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~ 496 (528)
T COG0365 417 RSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRK 496 (528)
T ss_pred eccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHhccCcccCCce
Confidence 89999999999999999999999999651 11111111 3356788888888888999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHH
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
|.++++||+|.||||.|+.|++.+.
T Consensus 497 i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 497 IRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred EEEecCCCCCCcccHHHHHHHHHHh
Confidence 9999999999999999999999876
No 9
>PLN02654 acetate-CoA ligase
Probab=99.78 E-value=1.5e-18 Score=118.71 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=70.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+ .++|..+++++|+.+++|.
T Consensus 534 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~ 613 (666)
T PLN02654 534 RVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPD 613 (666)
T ss_pred eccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCC
Confidence 89999999999999999999999999651 1111122222 2478889999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++++||+|.|||++|+.|++.+.+
T Consensus 614 ~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 614 KIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred EEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 999999999999999999999998754
No 10
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.78 E-value=2e-18 Score=117.83 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=70.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccC---CCCCCCH----HHHHHHHHhhCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEK---SKPVLSL----QELCTWAKDKLAPY 54 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~---~~~~~~~----~~l~~~~~~~l~~~ 54 (87)
|+||+||++|+||+|.|||++|..||.|. +... .+...+. ++|.++++++|+++
T Consensus 513 R~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~ 592 (647)
T PTZ00237 513 RSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESL 592 (647)
T ss_pred ccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCcc
Confidence 89999999999999999999999999651 1111 1112232 45678889999999
Q ss_pred CCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 55 KLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 55 ~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++|+.|.++++||+|+|||++|+.|++++.+
T Consensus 593 ~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~ 623 (647)
T PTZ00237 593 AVLRKIIIVNQLPKTKTGKIPRQIISKFLND 623 (647)
T ss_pred ccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence 9999999999999999999999999998754
No 11
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.77 E-value=1.6e-18 Score=117.78 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=70.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCC--------CCHHHHHHHHHhhCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPV--------LSLQELCTWAKDKLAP 53 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~--------~~~~~l~~~~~~~l~~ 53 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+.. ...++|.++++++|++
T Consensus 493 R~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~ 572 (628)
T TIGR02316 493 RTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGA 572 (628)
T ss_pred cCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999651 00111111 1246799999999999
Q ss_pred CCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 54 ~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|++|..+.+++++|+|+|||++|+.|++.+.+
T Consensus 573 ~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 573 VARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred CcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 99999999999999999999999999988754
No 12
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.77 E-value=2.4e-18 Score=115.03 Aligned_cols=82 Identities=29% Similarity=0.479 Sum_probs=70.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|++|+|.+||++|.+||.|. +....+...+.+++.++++++|+.|++|..+.
T Consensus 448 R~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 527 (549)
T PRK07788 448 RDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVV 527 (549)
T ss_pred cCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEE
Confidence 89999999999999999999999999651 11112334567899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++++|+|++||++|+.|+++
T Consensus 528 ~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 528 FLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EeCCCCCCCCcCEeHHHhhcc
Confidence 999999999999999999753
No 13
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=99.77 E-value=8.9e-19 Score=118.51 Aligned_cols=86 Identities=27% Similarity=0.457 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+||++|+++++.|||+++.+||.|. +....+ .+....+|..+++..+.++..|+
T Consensus 496 R~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~ 575 (626)
T KOG1175|consen 496 RVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPR 575 (626)
T ss_pred cccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccc
Confidence 89999999999999999999999999651 111122 22234678889999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.|.+++.||+|.|||+.|+.|+++..+.
T Consensus 576 ~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 576 LIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred eeEecCCCCccccchhHHHHHHHHhccC
Confidence 9999999999999999999999998653
No 14
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=99.76 E-value=2e-18 Score=116.53 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=72.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc--------------------cCCCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ--------------------EKSKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~--------------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.||+||++|++|+|.|||++|.+||.|... ...+...+.+++.++|+++|+.|++|..+
T Consensus 460 R~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i 539 (600)
T PRK08279 460 RLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFV 539 (600)
T ss_pred ccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEE
Confidence 7899999999999999999999999965110 01123456789999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
.+++++|+|.+||++|..|++.+.
T Consensus 540 ~~v~~lP~t~~GKi~r~~L~~~~~ 563 (600)
T PRK08279 540 RLVPELETTGTFKYRKVDLRKEGF 563 (600)
T ss_pred EeecCCCCCcchhhhHHHHhhcCC
Confidence 999999999999999999988754
No 15
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.76 E-value=7.8e-18 Score=111.82 Aligned_cols=85 Identities=28% Similarity=0.310 Sum_probs=65.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHh-CCCcc----c-------------------ccCCCC-CCCHHHHHHHH----HhhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE-KKAKR----D-------------------QEKSKP-VLSLQELCTWA----KDKL 51 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~-~~~v~----~-------------------~~~~~~-~~~~~~l~~~~----~~~l 51 (87)
|+|||||++|+||+|.|||++|.+ ||.|. + ....+. ..+.+++.++| +++|
T Consensus 378 R~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l 457 (499)
T PLN03051 378 RADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNL 457 (499)
T ss_pred ccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhc
Confidence 899999999999999999999986 88551 0 001111 23456666665 4557
Q ss_pred CCCCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 52 APYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 52 ~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++..|..+.++++||+|++||++|+.|++.+.+
T Consensus 458 ~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 491 (499)
T PLN03051 458 NPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKK 491 (499)
T ss_pred CCccCCceEEEcCCCCCCCCccHHHHHHHHHHHH
Confidence 7767677899999999999999999999987754
No 16
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.75 E-value=7.5e-18 Score=116.00 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=71.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc------------cCCCCCCCHHHHHHHHHhh-CCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ------------EKSKPVLSLQELCTWAKDK-LAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~------------~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~v 63 (87)
|+||+||++|+||+|.|||+++..|+.+. +. ...+...+.+++.++++++ ++.|++|..+.++
T Consensus 612 R~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v 691 (718)
T PRK08043 612 RAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELTREKLQQYAREHGVPELAVPRDIRYL 691 (718)
T ss_pred cCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccCHHHHHHHHHhcCCCcccCCceEEEe
Confidence 89999999999999999999999886331 00 0112335677899999987 9999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|+.|++.+.+
T Consensus 692 ~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 692 KQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred cccCcCCCCCcCHHHHHHHHhc
Confidence 9999999999999999988765
No 17
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.75 E-value=9e-18 Score=113.88 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=71.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCC---CHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVL---SLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~---~~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|++|+|.|||++|.+||.|.. ....+... ..+++.+++++.|+.+++|.
T Consensus 496 R~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 575 (625)
T TIGR02188 496 RVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPD 575 (625)
T ss_pred cccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCc
Confidence 899999999999999999999999996511 01111111 23679999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.|.++++||+|++||++|+.|++.+.+
T Consensus 576 ~i~~v~~lP~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 576 KIRFVPGLPKTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred EEEECCCCCCCCCccchHHHHHHHHcC
Confidence 999999999999999999999998754
No 18
>PLN02574 4-coumarate--CoA ligase-like
Probab=99.75 E-value=1.3e-17 Score=111.91 Aligned_cols=86 Identities=24% Similarity=0.502 Sum_probs=73.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+||++|.+|+|.|||.+|..||.|.. ....+...+.+++.++++++|++|+.|..+.
T Consensus 451 R~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~ 530 (560)
T PLN02574 451 RLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVV 530 (560)
T ss_pred cchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEE
Confidence 889999999999999999999999996510 0111233467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHhc
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+++++|+|++||++|+.|++.+.+.
T Consensus 531 ~v~~iP~t~~GKi~r~~L~~~~~~~ 555 (560)
T PLN02574 531 FVQSIPKSPAGKILRRELKRSLTNS 555 (560)
T ss_pred EeeccCCCCcchhhHHHHHHHHhhc
Confidence 9999999999999999999988653
No 19
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.75 E-value=1.1e-17 Score=113.71 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=70.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|++|+|.|||++|.+||.|.. ....+...+ .++|.+++++.|+.|+.|.
T Consensus 504 R~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 583 (637)
T PRK00174 504 RVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPD 583 (637)
T ss_pred ecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCC
Confidence 899999999999999999999999996610 001111122 4689999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++++||+|++||++|+.|++.+.+
T Consensus 584 ~i~~v~~lP~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 584 VIQFAPGLPKTRSGKIMRRILRKIAEG 610 (637)
T ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 999999999999999999999988654
No 20
>PRK07529 AMP-binding domain protein; Validated
Probab=99.74 E-value=2.2e-17 Score=112.41 Aligned_cols=85 Identities=28% Similarity=0.423 Sum_probs=72.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCC-CCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLA-PYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~-~~~~p~~i 60 (87)
|.||+||++|+||+|.+||++|.+||.|.. ....+...+.+++.++++++++ .+++|..+
T Consensus 466 R~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i 545 (632)
T PRK07529 466 RAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHV 545 (632)
T ss_pred cccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEE
Confidence 899999999999999999999999996511 1122334567889999999986 57899999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.++++||+|++||++|+.|++.+..
T Consensus 546 ~~v~~lP~t~~GKi~r~~Lr~~~~~ 570 (632)
T PRK07529 546 RILDALPKTAVGKIFKPALRRDAIR 570 (632)
T ss_pred EEecCCCCCCCCcccHHHHHHHHHH
Confidence 9999999999999999999998754
No 21
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.74 E-value=1.9e-17 Score=112.38 Aligned_cols=85 Identities=20% Similarity=0.363 Sum_probs=70.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC--------CCHHHHHHHHHhhCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV--------LSLQELCTWAKDKLAP 53 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~--------~~~~~l~~~~~~~l~~ 53 (87)
|+||+||++|++|+|.|||++|.+||.|.. ....+.. ...++|..+++++|+.
T Consensus 494 R~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 573 (629)
T PRK10524 494 RTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGA 573 (629)
T ss_pred EecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCC
Confidence 789999999999999999999999996510 0011111 1245788999999999
Q ss_pred CCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 54 ~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|+.|..|.++++||+|++||++|+.|++.+.+
T Consensus 574 ~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 574 VARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred CcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 99999999999999999999999999988653
No 22
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.73 E-value=3.5e-17 Score=109.82 Aligned_cols=85 Identities=24% Similarity=0.411 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..|+.|.. ....+...+.+++..++++.++.|++|..+.
T Consensus 454 R~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 533 (562)
T PRK05677 454 RKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVE 533 (562)
T ss_pred cCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEE
Confidence 789999999999999999999999996510 0112234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+..
T Consensus 534 ~v~~iP~t~sGKi~r~~L~~~~~~ 557 (562)
T PRK05677 534 FRDELPTTNVGKILRRELRDEELK 557 (562)
T ss_pred EeccCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999987654
No 23
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.73 E-value=3.6e-17 Score=109.55 Aligned_cols=85 Identities=26% Similarity=0.347 Sum_probs=73.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|.+||.|.. ....+...+..++.++++++++.+++|..+.
T Consensus 421 R~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~ 500 (542)
T PRK06155 421 RIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVE 500 (542)
T ss_pred cCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEE
Confidence 889999999999999999999999996511 1122344567899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+..
T Consensus 501 ~~~~iP~t~~GKi~r~~l~~~~~~ 524 (542)
T PRK06155 501 FVAALPKTENGKVQKFVLREQGVT 524 (542)
T ss_pred EeccCCCCcccceeHHHHHhhccC
Confidence 999999999999999999987653
No 24
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.73 E-value=4.5e-17 Score=108.90 Aligned_cols=85 Identities=27% Similarity=0.488 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||.++..+|.|.. ....+...+.+++.++++++++.|+.|..+.
T Consensus 430 R~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 509 (539)
T PRK07008 430 RSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVV 509 (539)
T ss_pred cccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEE
Confidence 789999999999999999999999996511 0112233567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|+.|++.+.+
T Consensus 510 ~v~~lP~t~sgKi~r~~l~~~~~~ 533 (539)
T PRK07008 510 FVDAIPHTATGKLQKLKLREQFRD 533 (539)
T ss_pred EecCCCCCCccceeHHHHHHHHHh
Confidence 999999999999999999998765
No 25
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.73 E-value=2.7e-17 Score=116.67 Aligned_cols=81 Identities=9% Similarity=0.045 Sum_probs=69.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+||+||++|.+|+|.|||++|.+||.|.. ....+...+.++|.++|++ ++.|++|..|.+
T Consensus 857 R~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~ 935 (994)
T PRK07868 857 RRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHV 935 (994)
T ss_pred cCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEE
Confidence 899999999999999999999999996611 0112334567889999986 999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++||+|++||++|..|++.
T Consensus 936 v~~lP~T~sGKi~r~~L~~~ 955 (994)
T PRK07868 936 VPEIPLSATYRPTVSALRAA 955 (994)
T ss_pred eCCCCCCccccEehHHHHhc
Confidence 99999999999999999865
No 26
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=99.72 E-value=1.4e-17 Score=111.05 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=68.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----cc---C-----------CCCCCCHHHHHHHHHhhCCCC--CCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----QE---K-----------SKPVLSLQELCTWAKDKLAPY--KLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~~---~-----------~~~~~~~~~l~~~~~~~l~~~--~~p~~i 60 (87)
|.||+||++|+||+|.|||++|.+||.|.. .. . .....+.+.+..+++++++.+ ++|..+
T Consensus 416 R~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~P~~~ 495 (525)
T PRK05851 416 RAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSDV 495 (525)
T ss_pred ecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHHHHHHHHHHHHhCCCccEE
Confidence 889999999999999999999999996611 00 0 001234456777788877777 899999
Q ss_pred EEec--ccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWD--SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~--~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+++ +||+|++||++|+.|++.+.+
T Consensus 496 ~~v~~~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 496 VFVAPGSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred EEECCCCcCcCcchHHHHHHHHHHHHh
Confidence 9998 899999999999999998865
No 27
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=99.72 E-value=2.9e-17 Score=110.05 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=70.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---------ccCCC----------CCCCHHHHHHHHHhh-CCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---------QEKSK----------PVLSLQELCTWAKDK-LAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---------~~~~~----------~~~~~~~l~~~~~~~-l~~~~~p~~i 60 (87)
|.||+||++|++|+|.|||++|.+||.|.. ....+ ...+.+++.+++.+. ++.|+.|..+
T Consensus 431 R~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~P~~i 510 (539)
T PRK06334 431 RLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNSKTSSILKISYH 510 (539)
T ss_pred ccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCChHHHHHHHHhcCCcccccchhe
Confidence 889999999999999999999999986631 00011 123567888999886 7889999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.++++||+|++||++|+.|++.+..
T Consensus 511 ~~v~~lP~t~~GKi~r~~L~~~~~~ 535 (539)
T PRK06334 511 HQVESIPMLGTGKPDYCSLNALAKS 535 (539)
T ss_pred eeecccccccCCcccHHHHHHHHHH
Confidence 9999999999999999999987653
No 28
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.72 E-value=3.6e-17 Score=112.37 Aligned_cols=83 Identities=25% Similarity=0.476 Sum_probs=68.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+|+.|.. ....+...+ ..++..+++++|+.|++|.
T Consensus 386 R~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~ 465 (705)
T PRK06060 386 RADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPH 465 (705)
T ss_pred ccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCc
Confidence 889999999999999999999999986510 001111122 2478889999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQL 83 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~ 83 (87)
.+.++++||+|++||++|+.|++.+
T Consensus 466 ~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 466 RFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred EEEEeecCCCCcchhhHHHHHHhhc
Confidence 9999999999999999999998764
No 29
>PLN02246 4-coumarate--CoA ligase
Probab=99.72 E-value=4.6e-17 Score=108.67 Aligned_cols=85 Identities=24% Similarity=0.484 Sum_probs=72.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+.+|.+|+|.+||++|.+||.|.. . ...+...+.+++.++++++++.|+.|..+.
T Consensus 433 R~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 512 (537)
T PLN02246 433 RLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVF 512 (537)
T ss_pred cccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEE
Confidence 789999999999999999999999996511 0 111223456889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.+.+
T Consensus 513 ~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 513 FVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred EeccCCCCCcchhhHHHHHHHHhc
Confidence 999999999999999999998754
No 30
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=1.2e-17 Score=108.12 Aligned_cols=85 Identities=36% Similarity=0.564 Sum_probs=74.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc------------------cccCCCCCCCHHHHHHHHHhh-CCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR------------------DQEKSKPVLSLQELCTWAKDK-LAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~------------------~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~ 61 (87)
|.||+|+++|++|..+|||+.|..||.|. +....+......+++.++++. ++.|++|+.|.
T Consensus 435 R~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~PDrie 514 (542)
T COG1021 435 RVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDRIE 514 (542)
T ss_pred eehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchhhhcCCccee
Confidence 78999999999999999999999999661 112344557888999999997 99999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||.|+-|||+++.|++.+..
T Consensus 515 ~v~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 515 FVDSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred ecccCCCcccccccHHHHHHHhhh
Confidence 999999999999999999987653
No 31
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.72 E-value=5.5e-17 Score=108.47 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=71.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhh--CCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDK--LAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~ 59 (87)
|.||+|+++|++|+|.|||++|.+||.|. +....+...+.+++..++... |+.+++|..
T Consensus 402 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~ 481 (529)
T PRK07867 402 RLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSY 481 (529)
T ss_pred cccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeE
Confidence 88999999999999999999999999651 111223346778899999875 999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++++|+|++||++|+.|++....
T Consensus 482 i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 482 VRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred EEEeeccCCCCCcceeHHHHHHhcCC
Confidence 99999999999999999999987643
No 32
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.72 E-value=5.6e-17 Score=106.45 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c--------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q--------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~--------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|+||+||++|.+|+|.|||++|..+|.|.. . .......+.+++.++|++++++|+.|..+.++
T Consensus 352 R~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~ 431 (458)
T PRK09029 352 RLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARFQQPVAYYLL 431 (458)
T ss_pred ccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhhchhccCCeEEEEe
Confidence 889999999999999999999999996511 0 00112356788999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|+.|++++.+
T Consensus 432 ~~~p~t~~gKi~r~~L~~~~~~ 453 (458)
T PRK09029 432 PPELKNGGIKISRQALKEWVAQ 453 (458)
T ss_pred cccccCcCCCcCHHHHHHHHHh
Confidence 9999999999999999998865
No 33
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.72 E-value=1e-16 Score=106.61 Aligned_cols=86 Identities=34% Similarity=0.619 Sum_probs=73.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----c---------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----D---------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~---------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|++|+|.+||.+|..++.+. + ....+...+.+.+.+++++.|+.|++|..+.
T Consensus 415 R~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~ 494 (528)
T PRK07470 415 RASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFF 494 (528)
T ss_pred CccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEE
Confidence 78999999999999999999999998541 0 0112223677889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHhc
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+++++|+|++||++|+.|++.+.+.
T Consensus 495 ~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 495 FWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred EeccCCCCCcccccHHHHHHHHHhc
Confidence 9999999999999999999988653
No 34
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.71 E-value=8e-17 Score=107.44 Aligned_cols=85 Identities=26% Similarity=0.484 Sum_probs=71.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCC--CCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSK--PVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~--~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+||+|+++|.+|+|.|||++|.++|.|.. . ...+ ...+.+++.++++++|+.|++|..
T Consensus 437 R~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~ 516 (546)
T PRK08314 437 RLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRI 516 (546)
T ss_pred cchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcE
Confidence 789999999999999999999999986511 0 0011 123457899999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++++|+|.+||++|+.|++...+
T Consensus 517 ~~~v~~iP~t~~GKv~r~~L~~~~~~ 542 (546)
T PRK08314 517 VEFVDSLPKSGSGKILWRQLQEQEKA 542 (546)
T ss_pred EEEecCCCCCCccceeHHHHHHHHhh
Confidence 99999999999999999999887654
No 35
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.71 E-value=1.1e-16 Score=105.50 Aligned_cols=85 Identities=35% Similarity=0.519 Sum_probs=72.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..+|.|. +. ...+...+..++.++++++++.|++|..+.
T Consensus 382 R~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 461 (488)
T PRK09088 382 RKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLR 461 (488)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEE
Confidence 88999999999999999999999998651 10 011223467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++++.+
T Consensus 462 ~~~~iP~t~~gKi~r~~l~~~~~~ 485 (488)
T PRK09088 462 LVDALPRTASGKLQKARLRDALAA 485 (488)
T ss_pred EcccCCCCCCCceeHHHHHHHHHh
Confidence 999999999999999999998764
No 36
>PLN03052 acetate--CoA ligase; Provisional
Probab=99.71 E-value=6.9e-17 Score=111.77 Aligned_cols=85 Identities=32% Similarity=0.369 Sum_probs=66.9
Q ss_pred CccceEEeCCeeecHHHHHHHHH-hCCCcc----cc----------------cC--CCCCCCHHHHHH----HHHhhCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLL-EKKAKR----DQ----------------EK--SKPVLSLQELCT----WAKDKLAP 53 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~-~~~~v~----~~----------------~~--~~~~~~~~~l~~----~~~~~l~~ 53 (87)
|+||+||++|+||+|.|||++|. .||.|. +. .. .+...+.++|++ .+++++++
T Consensus 610 R~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~ 689 (728)
T PLN03052 610 RADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNP 689 (728)
T ss_pred cCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999995 788541 00 00 122234455554 46677889
Q ss_pred CCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 54 ~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+..|..|.++++||+|.|||++|+.|++.+..
T Consensus 690 ~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~ 721 (728)
T PLN03052 690 LFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQ 721 (728)
T ss_pred ccCCCEEEEcCCCCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
No 37
>PLN03102 acyl-activating enzyme; Provisional
Probab=99.71 E-value=1.2e-16 Score=107.92 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=70.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC----------CCHHHHHHHHHhhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV----------LSLQELCTWAKDKL 51 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~----------~~~~~l~~~~~~~l 51 (87)
|.||+|+++|.+|+|.|||++|.+||.|.. ....+.. .+..++.++++.+|
T Consensus 441 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L 520 (579)
T PLN03102 441 RSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENL 520 (579)
T ss_pred ccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhc
Confidence 889999999999999999999999985510 0011111 13567999999999
Q ss_pred CCCCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 52 APYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 52 ~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.|++|..+.+++++|+|++||++|+.|++++.+
T Consensus 521 ~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~ 554 (579)
T PLN03102 521 PHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKG 554 (579)
T ss_pred ccccCCeEEEEcccCCCCCcccccHHHHHHHHHH
Confidence 9999999999999999999999999999998754
No 38
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.71 E-value=1.1e-16 Score=107.56 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=69.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc-------------------cCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ-------------------EKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~-------------------~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+|+++|++|+|.|||++|.+||.|... ...+...+ .+++..+++++|+.|+.|.
T Consensus 453 R~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 532 (570)
T PRK04319 453 RVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPR 532 (570)
T ss_pred cCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCc
Confidence 8899999999999999999999999965110 01111111 3578999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
.+.++++||+|++||++|+.|+++..
T Consensus 533 ~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 533 EIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred EEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 99999999999999999999998764
No 39
>PRK05852 acyl-CoA synthetase; Validated
Probab=99.70 E-value=8.4e-17 Score=107.34 Aligned_cols=85 Identities=20% Similarity=0.420 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||.+|..+|.|.. ........+.+++..+++++|+.|++|..+.
T Consensus 429 R~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~ 508 (534)
T PRK05852 429 RIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQ 508 (534)
T ss_pred cchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEE
Confidence 789999999999999999999999996511 0112223567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.|..
T Consensus 509 ~v~~iP~t~~GKi~r~~L~~~~~~ 532 (534)
T PRK05852 509 EASGLPHTAKGSLDRRAVAEQFGH 532 (534)
T ss_pred EhhhcCCCCCccccHHHHHHHhcc
Confidence 999999999999999999998854
No 40
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.70 E-value=1.3e-16 Score=107.15 Aligned_cols=85 Identities=24% Similarity=0.470 Sum_probs=69.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCC--------------CCCCHHHHHHHH
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSK--------------PVLSLQELCTWA 47 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~--------------~~~~~~~l~~~~ 47 (87)
|+||+||++|++|+|.|||+++..||.|.. ....+ ...+.+.+..++
T Consensus 435 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 514 (563)
T PLN02860 435 RSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHC 514 (563)
T ss_pred cccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHH
Confidence 789999999999999999999999996510 00111 134567889999
Q ss_pred Hh-hCCCCCCCceEEEe-cccCCCCCCcccHHHHHHHHHh
Q 046846 48 KD-KLAPYKLPTRLFLW-DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 48 ~~-~l~~~~~p~~i~~v-~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+ .|++|++|..+.++ ++||+|++||++|+.|++++.+
T Consensus 515 ~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~ 554 (563)
T PLN02860 515 REKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLS 554 (563)
T ss_pred hhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHHH
Confidence 87 59999999998775 6799999999999999998754
No 41
>PRK13388 acyl-CoA synthetase; Provisional
Probab=99.70 E-value=1.4e-16 Score=106.74 Aligned_cols=85 Identities=29% Similarity=0.332 Sum_probs=70.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhh--CCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDK--LAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~--l~~~~~p~~ 59 (87)
|+||+||++|++|+|.+||++|.+||.|.. ....+...+.+++.++++.+ |+.++.|..
T Consensus 401 R~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~ 480 (540)
T PRK13388 401 RTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRY 480 (540)
T ss_pred cCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcE
Confidence 789999999999999999999999996511 01122235567888888764 999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+|++||++|+.|++....
T Consensus 481 ~~~v~~iP~t~~GKv~R~~L~~~~~~ 506 (540)
T PRK13388 481 VRIAADLPSTATNKVLKRELIAQGWA 506 (540)
T ss_pred EEEeccCCCCCcceeeHHhHHHhccC
Confidence 99999999999999999999987643
No 42
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.70 E-value=2.1e-16 Score=104.12 Aligned_cols=85 Identities=31% Similarity=0.465 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..+|.+. +....+...+.+++..+++..|+.+++|..+.
T Consensus 392 R~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 471 (496)
T PRK06839 392 RKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIV 471 (496)
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEE
Confidence 78999999999999999999999999651 11112234566889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|..|+++..+
T Consensus 472 ~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 472 FLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred EeccCCCCccccccHHHHHHHhhc
Confidence 999999999999999999987653
No 43
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.70 E-value=1.3e-16 Score=105.27 Aligned_cols=86 Identities=27% Similarity=0.417 Sum_probs=73.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc----cCC-----------CCCCCHHHHHHHHHhhCCCCCCCceEEEecc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ----EKS-----------KPVLSLQELCTWAKDKLAPYKLPTRLFLWDS 65 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~----~~~-----------~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~ 65 (87)
|+||+|+++|.+|+|.+||+++.++|.|... ... ....+.+++.+++++.++.|++|..+.++++
T Consensus 382 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~ 461 (487)
T PRK07638 382 REKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIPKEWHFVDE 461 (487)
T ss_pred cCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCCHHHHHHHHHHHhhcccCCcEEEEecc
Confidence 8899999999999999999999999976111 000 0135677899999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHhc
Q 046846 66 LPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 66 ~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+|+|++||++|+.|++.+...
T Consensus 462 iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 462 IPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred cCCCCcccccHHHHHHHHhcc
Confidence 999999999999999988653
No 44
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.70 E-value=9.4e-17 Score=108.05 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=72.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+++|.+|+|.+||++|.+||.|.. ....+ ...+.+++..+++++|+.|++|.
T Consensus 451 R~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~ 530 (576)
T PRK05620 451 RARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPE 530 (576)
T ss_pred chhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCe
Confidence 789999999999999999999999996510 00111 12346789999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.+.+++++|+|.+||++|+.|++.+..+
T Consensus 531 ~i~~v~~~P~t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 531 YWTFVDEIDKTSVGKFDKKDLRQHLADG 558 (576)
T ss_pred EEEEeccCCCCCcccCcHHHHHHHHhcC
Confidence 9999999999999999999999998753
No 45
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.70 E-value=1.8e-16 Score=106.31 Aligned_cols=85 Identities=27% Similarity=0.434 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|.++|.+.. ....+...+.+++..+++++++.++.|..+.
T Consensus 452 R~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 531 (563)
T PRK06710 452 RKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYE 531 (563)
T ss_pred ccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEE
Confidence 789999999999999999999999986510 1112234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+..
T Consensus 532 ~v~~iP~t~~GKi~r~~L~~~~~~ 555 (563)
T PRK06710 532 FRDELPKTTVGKILRRVLIEEEKR 555 (563)
T ss_pred EcccCCCCccchhhHHHHHHHHhh
Confidence 999999999999999999998764
No 46
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.70 E-value=1.7e-16 Score=104.80 Aligned_cols=84 Identities=31% Similarity=0.522 Sum_probs=71.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||++|..+|.|.. . .......+.+++.++++++|++|+.|..+.
T Consensus 394 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 473 (497)
T PRK06145 394 RKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLK 473 (497)
T ss_pred cccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEE
Confidence 889999999999999999999999986511 0 012233467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
+++++|+|++||++|+.|++.+.
T Consensus 474 ~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 474 VRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EeccCCCCCcccccHHHHHHHhc
Confidence 99999999999999999998764
No 47
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=99.70 E-value=2.1e-16 Score=105.64 Aligned_cols=85 Identities=25% Similarity=0.447 Sum_probs=73.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||..+.+||.|.. ....+...+.+.+.+++..+++.|+.|..+.
T Consensus 431 R~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~ 510 (542)
T PRK06018 431 RSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVA 510 (542)
T ss_pred cCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEE
Confidence 789999999999999999999999996511 1122334567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+.+
T Consensus 511 ~v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 511 FVDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred EeccCCCCCcchhhHHHHHHHHhc
Confidence 999999999999999999998865
No 48
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.70 E-value=2.1e-16 Score=106.18 Aligned_cols=85 Identities=27% Similarity=0.548 Sum_probs=73.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++..|+.+. +....+...+.+++.++++++|+.+++|..+.
T Consensus 466 R~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 545 (573)
T PRK05605 466 RIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFY 545 (573)
T ss_pred ccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEE
Confidence 88999999999999999999999998551 11122334567899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|..|++.+.+
T Consensus 546 ~~~~iP~t~~GKi~r~~L~~~~~~ 569 (573)
T PRK05605 546 HVDELPRDQLGKVRRREVREELLE 569 (573)
T ss_pred EeccCCCCCcccccHHHHHHHHHH
Confidence 999999999999999999998754
No 49
>PRK08308 acyl-CoA synthetase; Validated
Probab=99.69 E-value=1.5e-16 Score=103.47 Aligned_cols=79 Identities=29% Similarity=0.523 Sum_probs=67.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc-----------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ-----------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~-----------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|.||+||++|++|+|.|||+++..+|.+... .......+.+++.++++++++.|++|..+.++
T Consensus 312 R~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 391 (414)
T PRK08308 312 RMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEIDPVQLREWCIQHLAPYQVPHEIESV 391 (414)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCHHHHHHHHHHhCccccCCcEEEEe
Confidence 8899999999999999999999999865110 01123456788999999999999999999999
Q ss_pred cccCCCCCCcccHHHH
Q 046846 64 DSLPRNAMGKVNKKEL 79 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l 79 (87)
+++|+|++||++|+.|
T Consensus 392 ~~iP~t~~GKi~r~~~ 407 (414)
T PRK08308 392 TEIPKNANGKVSRKLL 407 (414)
T ss_pred ccCCCCCCcCeehhhh
Confidence 9999999999999954
No 50
>PRK07798 acyl-CoA synthetase; Validated
Probab=99.69 E-value=1.5e-16 Score=105.37 Aligned_cols=85 Identities=27% Similarity=0.368 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++.++|.|.. ....+...+.+++.+++++.|+.|++|..+.
T Consensus 429 R~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 508 (533)
T PRK07798 429 RGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIW 508 (533)
T ss_pred cccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEE
Confidence 789999999999999999999999986511 0112234577899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++...+
T Consensus 509 ~~~~iP~t~~GK~~~~~~~~~~~~ 532 (533)
T PRK07798 509 FVDEVQRSPAGKADYRWAKEQAAE 532 (533)
T ss_pred EcccCCCCCcchhhHHHHhhhhcc
Confidence 999999999999999999998654
No 51
>PRK13382 acyl-CoA synthetase; Provisional
Probab=99.69 E-value=1.5e-16 Score=106.46 Aligned_cols=81 Identities=27% Similarity=0.475 Sum_probs=69.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|++|+|.+||.+|..||.|.. ....+...+.+++.+++++.|+.|+.|..+.
T Consensus 437 R~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 516 (537)
T PRK13382 437 RDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIV 516 (537)
T ss_pred cccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcEEE
Confidence 889999999999999999999999996510 0112223566889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~ 81 (87)
+++++|+|++||++|+.|++
T Consensus 517 ~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 517 VLDELPRGATGKILRRELQA 536 (537)
T ss_pred EeccCCCCCCCCCcHHhhCC
Confidence 99999999999999998864
No 52
>PRK12583 acyl-CoA synthetase; Provisional
Probab=99.69 E-value=3.9e-16 Score=104.30 Aligned_cols=85 Identities=27% Similarity=0.389 Sum_probs=72.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||++|..++.+.. ....+...+..++..+++++|+.++.|..+.
T Consensus 449 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~ 528 (558)
T PRK12583 449 RSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFR 528 (558)
T ss_pred cccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEE
Confidence 789999999999999999999999986511 0111223567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++++..
T Consensus 529 ~v~~lP~t~sGK~~r~~L~~~~~~ 552 (558)
T PRK12583 529 FVDEFPMTVTGKVQKFRMREISIE 552 (558)
T ss_pred EeccCCCCCCCCccHHHHHHHHHh
Confidence 999999999999999999998754
No 53
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.68 E-value=4.7e-16 Score=104.12 Aligned_cols=86 Identities=30% Similarity=0.512 Sum_probs=72.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHh-hCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKD-KLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i 60 (87)
|.||+|+++|++|+|.+||++|..++.+.. ....+...+.+++.+++.+ .++.|++|..+
T Consensus 440 R~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i 519 (547)
T PRK13295 440 RSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERL 519 (547)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEE
Confidence 789999999999999999999999985510 0111233456789999986 69999999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHhc
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.+++++|+|.+||++|..|++.+.+.
T Consensus 520 ~~v~~lP~t~sgK~~r~~L~~~~~~~ 545 (547)
T PRK13295 520 VVRDALPRTPSGKIQKFRLREMLRGE 545 (547)
T ss_pred EEeccCCCCCCccccHHHHHHHHhcC
Confidence 99999999999999999999988654
No 54
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.68 E-value=4.9e-16 Score=102.69 Aligned_cols=85 Identities=34% Similarity=0.514 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||+++..++.|.. . ...+...+..++.++++++++.++.|..+.
T Consensus 398 R~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 477 (504)
T PRK07514 398 RGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVF 477 (504)
T ss_pred cccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEE
Confidence 789999999999999999999999986511 0 011223467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.+.+
T Consensus 478 ~v~~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 478 FVDELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred EeccCCCCCCcceeHHHHHHHHHh
Confidence 999999999999999999998764
No 55
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.68 E-value=3.9e-16 Score=111.44 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=71.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc------------cCCCCCCCHHHHHHHHHhh-CCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ------------EKSKPVLSLQELCTWAKDK-LAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~------------~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~v 63 (87)
|.||+||++|++|+|.|||+++.+|+.+. +. ...+...+.+++.+++.+. ++.|++|..+.++
T Consensus 1031 R~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v 1110 (1140)
T PRK06814 1031 RAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDATRAAFLAHAKAAGASELMVPAEIITI 1110 (1140)
T ss_pred cccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcCHHHHHHHHHHcCCCcccCCcEEEEe
Confidence 88999999999999999999999997441 00 0112345677889999875 9999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|+.|++.+.+
T Consensus 1111 ~~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814 1111 DEIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred cCcCCCCCCCCcHHHHHHHHHH
Confidence 9999999999999999998764
No 56
>PRK06188 acyl-CoA synthetase; Validated
Probab=99.68 E-value=4.6e-16 Score=103.48 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=72.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..++.+.. ....+.....+++..++.+.++.++.|..+.
T Consensus 414 R~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 493 (524)
T PRK06188 414 RKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVD 493 (524)
T ss_pred ccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 789999999999999999999999986511 0112233456789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.|.+
T Consensus 494 ~v~~~P~t~~gKi~r~~L~~~~~~ 517 (524)
T PRK06188 494 FVDSLPLTALGKPDKKALRARYWE 517 (524)
T ss_pred EecCCCCCccccccHHHHHHHHHh
Confidence 999999999999999999999854
No 57
>PRK08316 acyl-CoA synthetase; Validated
Probab=99.68 E-value=6.4e-16 Score=102.34 Aligned_cols=85 Identities=32% Similarity=0.559 Sum_probs=72.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+.|.+++.+.. ....+...+.+.+.++++.+++.++.|..+.
T Consensus 416 R~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 495 (523)
T PRK08316 416 RKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVI 495 (523)
T ss_pred ccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 889999999999999999999999985510 0111223567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.|.+
T Consensus 496 ~v~~~p~t~~gKi~r~~l~~~~~~ 519 (523)
T PRK08316 496 FVDELPRNPSGKILKRELRERYAG 519 (523)
T ss_pred EecCCCCCCccceeHHHHHHHHHh
Confidence 999999999999999999999875
No 58
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.67 E-value=7.7e-16 Score=102.97 Aligned_cols=85 Identities=34% Similarity=0.551 Sum_probs=72.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccC-CCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEK-SKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~-~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.||+|+++|.+|+|.+||++|.++|.+.. ... .......+++..+++++++.|+.|..+
T Consensus 420 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i 499 (542)
T PRK07786 420 RKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKAL 499 (542)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEE
Confidence 789999999999999999999999985510 001 112356688999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+++++|+|++||++|..|++.+..
T Consensus 500 ~~v~~iP~t~~GKv~r~~L~~~~~~ 524 (542)
T PRK07786 500 EIVDALPRNPAGKVLKTELRERYGA 524 (542)
T ss_pred EEeccCCCCCcccccHHHHHHHHHh
Confidence 9999999999999999999999875
No 59
>PRK13390 acyl-CoA synthetase; Provisional
Probab=99.67 E-value=2.5e-16 Score=104.23 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=65.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC---CCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV---LSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~---~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+++|++|+|.+||++|..||.|.. ....+.. ...+++.++++.+|+.|+.|.
T Consensus 400 R~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 479 (501)
T PRK13390 400 RKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPR 479 (501)
T ss_pred ccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCc
Confidence 789999999999999999999999986510 0011111 124578899999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~ 80 (87)
.+.+++++|+|++||++|+.|+
T Consensus 480 ~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 480 SVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred EEEEeccCCCCCccceehhhcC
Confidence 9999999999999999999873
No 60
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=99.67 E-value=3.7e-16 Score=103.39 Aligned_cols=81 Identities=26% Similarity=0.435 Sum_probs=69.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++..+|.|. +....+...+...+.+++++++++++.|..+.
T Consensus 415 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 494 (515)
T TIGR03098 415 RRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIH 494 (515)
T ss_pred ccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEE
Confidence 78999999999999999999999998651 00112334567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~ 81 (87)
++++||+|.+||++|+.|++
T Consensus 495 ~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 495 VRQALPRNANGKIDRKALAA 514 (515)
T ss_pred EeccCCCCCCCCCcHHHhcc
Confidence 99999999999999999864
No 61
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.67 E-value=7e-16 Score=101.51 Aligned_cols=85 Identities=33% Similarity=0.544 Sum_probs=73.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|+||++|.+|.+|+|.+||.++..++.+.. . ...+...+.+++.+++++.|+.|++|..+.++
T Consensus 381 R~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~ 460 (483)
T PRK03640 381 RRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVPKRFYFV 460 (483)
T ss_pred cccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHHHHHHHhccCCCCCcEEEEe
Confidence 789999999999999999999999986511 0 11233466788999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++|+|++||++|..|++.+.+
T Consensus 461 ~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 461 EELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred CCCCCCCccceeHHHHHHHHhh
Confidence 9999999999999999998764
No 62
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.67 E-value=9.3e-16 Score=101.73 Aligned_cols=85 Identities=28% Similarity=0.442 Sum_probs=72.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+||++|.+|+|.+||+.|..++.+.. ........+.+++..++++.++.|+.|..+.
T Consensus 400 R~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 479 (509)
T PRK12406 400 RKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIE 479 (509)
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 789999999999999999999999986511 0111223467889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|..|++.+..
T Consensus 480 ~~~~iP~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 480 IMAELPREDSGKIFKRRLRDPYWA 503 (509)
T ss_pred EeccCCCCCccchhHHHHHHHHHh
Confidence 999999999999999999988754
No 63
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.67 E-value=4.3e-16 Score=102.89 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=69.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc-c-C--------------CCC---C-CCHHHHHHHHHhhCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ-E-K--------------SKP---V-LSLQELCTWAKDKLAPYKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~-~-~--------------~~~---~-~~~~~l~~~~~~~l~~~~~ 56 (87)
|.||+|+++|.+|+|.+||+++.++|.|. +. . . ... . ....++...++++++.++.
T Consensus 394 R~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 473 (502)
T TIGR01734 394 RLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMI 473 (502)
T ss_pred cccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcC
Confidence 78999999999999999999999999651 11 0 0 000 0 1126788999999999999
Q ss_pred CceEEEecccCCCCCCcccHHHHHHHHH
Q 046846 57 PTRLFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 57 p~~i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
|..+.+++++|+|++||++|+.|++.+.
T Consensus 474 P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 474 PRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred CcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 9999999999999999999999999764
No 64
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.66 E-value=5.9e-16 Score=100.82 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=61.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc--------------ccCCCCCC--CHHHHHHHHHhhCCCCCCCceEEEec
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD--------------QEKSKPVL--SLQELCTWAKDKLAPYKLPTRLFLWD 64 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~--------------~~~~~~~~--~~~~l~~~~~~~l~~~~~p~~i~~v~ 64 (87)
|+||+|+++|+||+|.+||++|.+||.|.. ....+... ..+++.+++.++++.|+.|..+.+++
T Consensus 296 R~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~ 375 (386)
T TIGR02372 296 RKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLDGRRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDRFRFGT 375 (386)
T ss_pred ccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEcCCceEEEEEEECCCCChHHHHHHHHHHHHHhCCCCCCCcEEEEcc
Confidence 899999999999999999999999996511 11111111 14578899999999999999999999
Q ss_pred ccCCCCCCccc
Q 046846 65 SLPRNAMGKVN 75 (87)
Q Consensus 65 ~~p~t~~gKi~ 75 (87)
++|+|++||++
T Consensus 376 ~lP~t~~GKi~ 386 (386)
T TIGR02372 376 ELPRTGAGKLA 386 (386)
T ss_pred cCCCCCCCCcC
Confidence 99999999985
No 65
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=99.66 E-value=4.7e-16 Score=104.06 Aligned_cols=85 Identities=22% Similarity=0.410 Sum_probs=72.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|++|+|.+||.+|.+++.|.. ....+...+.+++.++++..++.|+.|..+.
T Consensus 438 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~ 517 (546)
T PLN02330 438 RIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQ 517 (546)
T ss_pred chHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEE
Confidence 789999999999999999999999986510 0111223556789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|+.|++.+..
T Consensus 518 ~v~~iP~t~~GK~~r~~L~~~~~~ 541 (546)
T PLN02330 518 FVDSIPKSLSGKIMRRLLKEKMLS 541 (546)
T ss_pred EeccCCCCCCcceeHHHHHHHHHh
Confidence 999999999999999999998864
No 66
>PRK08315 AMP-binding domain protein; Validated
Probab=99.66 E-value=1.2e-15 Score=102.12 Aligned_cols=85 Identities=22% Similarity=0.411 Sum_probs=72.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..++.+.. ....+...+.+.+..++++.++.|++|..+.
T Consensus 448 R~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~ 527 (559)
T PRK08315 448 RIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIR 527 (559)
T ss_pred eccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEE
Confidence 789999999999999999999999986510 0111223467789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|.+||++|..|++.+..
T Consensus 528 ~v~~lP~t~~GK~~r~~L~~~~~~ 551 (559)
T PRK08315 528 FVDEFPMTVTGKIQKFKMREMMIE 551 (559)
T ss_pred EcccCCCCCCCceeHHHHHHHHHh
Confidence 999999999999999999988754
No 67
>PRK06178 acyl-CoA synthetase; Validated
Probab=99.66 E-value=1e-15 Score=102.74 Aligned_cols=84 Identities=30% Similarity=0.488 Sum_probs=71.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+|+++|.+|+|.+||+++..++.|.. ....+...+.+++.++++++++.|++|. +.
T Consensus 463 R~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~ 541 (567)
T PRK06178 463 RRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IR 541 (567)
T ss_pred cccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EE
Confidence 789999999999999999999999986510 0111223467889999999999999996 88
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+.+
T Consensus 542 ~v~~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 542 IVDALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred EeccCCCCCccceeHHHHHHHHHh
Confidence 899999999999999999998865
No 68
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.66 E-value=1.4e-15 Score=100.48 Aligned_cols=87 Identities=31% Similarity=0.477 Sum_probs=74.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----c---------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----D---------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~---------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+.|..++.+. + ....+...+..++.+++++.++.+..|..+.
T Consensus 416 R~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 495 (521)
T PRK06187 416 RIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIA 495 (521)
T ss_pred cccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEE
Confidence 78999999999999999999999998651 1 0012233567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHhcC
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAAQQ 87 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~~~ 87 (87)
+++++|+|++||++|..+++.|.+.|
T Consensus 496 ~v~~~P~t~~gK~~r~~l~~~~~~~~ 521 (521)
T PRK06187 496 FVDELPRTSVGKILKRVLREQYAEGK 521 (521)
T ss_pred EccCCCCCCCCCeeHHHHHHHHhcCC
Confidence 99999999999999999999998764
No 69
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.66 E-value=7.9e-16 Score=103.37 Aligned_cols=82 Identities=30% Similarity=0.571 Sum_probs=70.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c--------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q--------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~--------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||..|.+||.|.. . .......+.+++..++.++++.|++|..+.+
T Consensus 462 R~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~ 541 (562)
T PRK12492 462 RKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAYCKENFTGYKVPKHIVL 541 (562)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEE
Confidence 789999999999999999999999986510 0 0112235678899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
++++|+|++||++|+.|+++
T Consensus 542 ~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 542 RDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred eccCCCCCCCceeHHHHHhh
Confidence 99999999999999999875
No 70
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=99.65 E-value=5.7e-16 Score=102.83 Aligned_cols=80 Identities=30% Similarity=0.526 Sum_probs=67.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||+++..|+.|.. ....+...+.+++..+++++++.|++|..+.
T Consensus 419 R~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 498 (517)
T PRK08008 419 RRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLE 498 (517)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEE
Confidence 789999999999999999999999985510 1112233456789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~ 80 (87)
+++++|+|++||++|+.|+
T Consensus 499 ~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 499 IRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EeccCCCCCccceehhhcC
Confidence 9999999999999998763
No 71
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=99.65 E-value=4.8e-16 Score=112.64 Aligned_cols=81 Identities=27% Similarity=0.425 Sum_probs=66.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c--------------cCC-C-CC-----------------------
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q--------------EKS-K-PV----------------------- 37 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~--------------~~~-~-~~----------------------- 37 (87)
|.||+||++|+||+|.|||.+|.+||.|.. . ... . ..
T Consensus 699 R~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1389)
T TIGR03443 699 RADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIK 778 (1389)
T ss_pred ccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999996510 0 000 0 00
Q ss_pred --CCHHHHHHHHHhhCCCCCCCceEEEecccCCCCCCcccHHHHHH
Q 046846 38 --LSLQELCTWAKDKLAPYKLPTRLFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 38 --~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
...+++.++++++|+.|++|..+.++++||+|++||++|+.|..
T Consensus 779 ~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~ 824 (1389)
T TIGR03443 779 YRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPF 824 (1389)
T ss_pred hhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCC
Confidence 01457889999999999999999999999999999999999853
No 72
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=99.65 E-value=7.2e-16 Score=103.31 Aligned_cols=82 Identities=26% Similarity=0.466 Sum_probs=70.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||++|..++.|.. ....+...+.+++.+++.+.++.|+.|..+.+
T Consensus 458 R~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~v~~ 537 (560)
T PRK08751 458 RKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEF 537 (560)
T ss_pred echhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHHHHHHhhhhccCCeEEEE
Confidence 789999999999999999999999986510 01122345677899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
++++|+|.+||++|+.|++.
T Consensus 538 v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 538 RKELPKTNVGKILRRELRDA 557 (560)
T ss_pred hhhCCCCccccccHHHHHHh
Confidence 99999999999999999876
No 73
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.65 E-value=1.7e-15 Score=101.02 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=72.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||++|..++.|.. ....+...+.+++.++|++++++|++|..+.+
T Consensus 427 R~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 506 (540)
T PRK06164 427 RMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQV 506 (540)
T ss_pred ecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEE
Confidence 789999999999999999999999986511 00122235678899999999999999999999
Q ss_pred ecccCCCCCC---cccHHHHHHHHHh
Q 046846 63 WDSLPRNAMG---KVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~g---Ki~r~~l~~~~~~ 85 (87)
++++|+|.+| |++|+.|++.+.+
T Consensus 507 ~~~~P~t~~g~~~Ki~r~~L~~~~~~ 532 (540)
T PRK06164 507 VEAFPVTESANGAKIQKHRLREMAQA 532 (540)
T ss_pred ecCCCCCCCCccccccHHHHHHHHHH
Confidence 9999999999 9999999998764
No 74
>PRK09274 peptide synthase; Provisional
Probab=99.65 E-value=6e-16 Score=103.55 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=65.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCC---CCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPY---KLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~---~~p~~ 59 (87)
|.||+|+++|.+|+|.|||++|.+||.|.. ....+...+.+++.+++++.++.+ +.|..
T Consensus 441 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 520 (552)
T PRK09274 441 RKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIER 520 (552)
T ss_pred ccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeE
Confidence 789999999999999999999999996510 011122233445666666655554 47789
Q ss_pred EEEecccCCC--CCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRN--AMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t--~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+| ++||++|+.|++++..
T Consensus 521 ~~~~~~lP~t~~~~GKi~r~~L~~~~~~ 548 (552)
T PRK09274 521 FLIHPSFPVDIRHNAKIFREKLAVWAAK 548 (552)
T ss_pred EeccCCCCccccccccccHHHHHHHHHH
Confidence 9999999999 7999999999998765
No 75
>PRK05857 acyl-CoA synthetase; Validated
Probab=99.65 E-value=9.6e-16 Score=102.62 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=66.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cccC-------------CCCCCC---H----HHHHHHHHhhCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQEK-------------SKPVLS---L----QELCTWAKDKLAPYKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~~~-------------~~~~~~---~----~~l~~~~~~~l~~~~~ 56 (87)
|.||+||++|.+|+|.|||.+|..||.|. +... .....+ . +.+..++++.++.|++
T Consensus 423 R~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 502 (540)
T PRK05857 423 RSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMAR 502 (540)
T ss_pred cccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccC
Confidence 78999999999999999999999999651 1000 001111 1 2344556677999999
Q ss_pred CceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 57 PTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 57 p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|..+.+++++|+|++||++|+.|++.+.+
T Consensus 503 P~~v~~~~~iP~t~~GKi~r~~l~~~~~~ 531 (540)
T PRK05857 503 PSTIVIVTDIPRTQSGKVMRASLAAAATA 531 (540)
T ss_pred CeEEEEhhcCCCCCCcceeHHHHHHhhhh
Confidence 99999999999999999999999998875
No 76
>PRK12316 peptide synthase; Provisional
Probab=99.65 E-value=5.1e-16 Score=121.37 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=70.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc---------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEEEecc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR---------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDS 65 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~---------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~ 65 (87)
|+||+||++|++|+|.|||++|.+||.|. +....+.....+.+.++++++|+.|++|..+.++++
T Consensus 907 R~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~v~~ 986 (5163)
T PRK12316 907 RIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLALER 986 (5163)
T ss_pred ccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEEHhh
Confidence 89999999999999999999999999661 111122245578899999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHH
Q 046846 66 LPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 66 ~p~t~~gKi~r~~l~~~ 82 (87)
||+|++||++|+.|.+.
T Consensus 987 lP~t~~GKidr~~L~~~ 1003 (5163)
T PRK12316 987 LPLTPNGKLDRKALPAP 1003 (5163)
T ss_pred CCCCCCCChhHHhhcCc
Confidence 99999999999999764
No 77
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.65 E-value=6.5e-16 Score=105.05 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=68.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHh-CCCccc-----c-c----------------------------------CCC-CCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE-KKAKRD-----Q-E----------------------------------KSK-PVL 38 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~-~~~v~~-----~-~----------------------------------~~~-~~~ 38 (87)
|.||+||++|+||+|.|||++|.+ ||.|.. . . ..+ ...
T Consensus 484 R~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~ 563 (631)
T PRK07769 484 RVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKL 563 (631)
T ss_pred ccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccc
Confidence 899999999999999999999986 775421 0 0 011 134
Q ss_pred CHHHHHHHHHhhCCC-CC-CCceEEEec--ccCCCCCCcccHHHHHHHHHh
Q 046846 39 SLQELCTWAKDKLAP-YK-LPTRLFLWD--SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 39 ~~~~l~~~~~~~l~~-~~-~p~~i~~v~--~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++|.++++++++. ++ .|..+.+++ +||+|++||++|+.|++.+..
T Consensus 564 ~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 564 DPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred cHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 567899999999995 66 588999997 799999999999999998764
No 78
>PRK12467 peptide synthase; Provisional
Probab=99.64 E-value=4.7e-16 Score=120.11 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=69.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+||+||++|+||+|.|||++|.++|+|.. . .........+.++++++.+|+.|++|..+.+
T Consensus 3492 R~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~ 3571 (3956)
T PRK12467 3492 RIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLV 3571 (3956)
T ss_pred cccceEeeceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeee
Confidence 899999999999999999999999997610 0 0111234567899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++||+|++||++|+.|.+.
T Consensus 3572 l~~lP~t~~GKidR~~L~~~ 3591 (3956)
T PRK12467 3572 LAAMPLGPNGKVDRKALPDP 3591 (3956)
T ss_pred eccCCCCCCCccchhhcCCC
Confidence 99999999999999998764
No 79
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=99.64 E-value=8.8e-16 Score=102.34 Aligned_cols=80 Identities=40% Similarity=0.621 Sum_probs=67.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhh-CCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDK-LAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..||.|.. ....+...+..++.++++++ ++.|+.|..+.
T Consensus 429 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~~~~~P~~i~ 508 (527)
T TIGR02275 429 RAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPDRVE 508 (527)
T ss_pred cccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHHhCCCccccCCCEEE
Confidence 789999999999999999999999996510 01122235678899999986 99999999999
Q ss_pred EecccCCCCCCcccHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~ 80 (87)
+++++|+|++||++|+.|+
T Consensus 509 ~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 509 FIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EeccCCCCCccceeHHhcC
Confidence 9999999999999999763
No 80
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.64 E-value=1.7e-15 Score=100.18 Aligned_cols=81 Identities=36% Similarity=0.598 Sum_probs=69.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..++++.. ....+...+.+++.++++..|+.++.|..+.
T Consensus 413 R~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 492 (513)
T PRK07656 413 RKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIE 492 (513)
T ss_pred cccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEE
Confidence 789999999999999999999999986511 0011234567889999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~ 81 (87)
+++++|+|++||++|..|++
T Consensus 493 ~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 493 FLDELPKNATGKVLKRALRE 512 (513)
T ss_pred EecCCCCCCccceeHHHHhc
Confidence 99999999999999999875
No 81
>PRK13391 acyl-CoA synthetase; Provisional
Probab=99.64 E-value=3.2e-15 Score=99.27 Aligned_cols=86 Identities=23% Similarity=0.322 Sum_probs=71.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------c-cCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------Q-EKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~-~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+++++|.+|+|.+||++|.+||.+.. . ...+ .....+++..+++++++.|+.|.
T Consensus 403 R~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 482 (511)
T PRK13391 403 RAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPR 482 (511)
T ss_pred cCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCc
Confidence 789999999999999999999999985510 0 0011 11234689999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.+.+++++|+|++||++|..|++.|...
T Consensus 483 ~i~~~~~~P~t~~gKv~r~~l~~~~~~~ 510 (511)
T PRK13391 483 SIDFEDELPRLPTGKLYKRLLRDRYWGN 510 (511)
T ss_pred EEEEeecCCCCCccceeHHHHHHHhhcc
Confidence 9999999999999999999999998653
No 82
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=99.63 E-value=2.1e-15 Score=100.86 Aligned_cols=85 Identities=38% Similarity=0.515 Sum_probs=71.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhh-CCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDK-LAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||.+|..+|.+.. . .......+..++.+++++. ++.|+.|..+.+
T Consensus 430 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~l~~~~~~~~l~~~~~P~~~~~ 509 (536)
T PRK10946 430 REKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIAEFKLPDRVEC 509 (536)
T ss_pred cccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCCCHHHHHHHHHhCCccccccCcEEEE
Confidence 789999999999999999999999996511 0 0111236778899999886 999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++|+|++||++|+.|++++..
T Consensus 510 ~~~iP~t~~GKv~r~~L~~~~~~ 532 (536)
T PRK10946 510 VDSLPLTAVGKVDKKQLRQWLAS 532 (536)
T ss_pred eccCCCCCCCcccHHHHHHHHHh
Confidence 99999999999999999998764
No 83
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=99.63 E-value=1.9e-15 Score=101.29 Aligned_cols=82 Identities=26% Similarity=0.494 Sum_probs=69.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc------------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ------------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~------------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|++|+|+++|.+|+|.+||++|..++.|... ...+...+.+++..++.+.++.++.|..+.+
T Consensus 456 R~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 535 (557)
T PRK07059 456 RKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDVKAFCKERLTNYKRPKFVEF 535 (557)
T ss_pred ccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEE
Confidence 7899999999999999999999999865110 0112235667899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
++++|+|++||++|+.|++.
T Consensus 536 v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 536 RTELPKTNVGKILRRELRDG 555 (557)
T ss_pred eccCCCCcccceeHHHHHhh
Confidence 99999999999999998764
No 84
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.63 E-value=1.3e-15 Score=101.69 Aligned_cols=80 Identities=30% Similarity=0.466 Sum_probs=67.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCCCCHHHHHHHHHh-hCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPVLSLQELCTWAKD-KLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i 60 (87)
|.||+|+++|++|+|.+||++|.+||.|.. . ...+...+.+++.+++.. +++.|+.|..+
T Consensus 438 R~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i 517 (538)
T TIGR03208 438 RSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERL 517 (538)
T ss_pred ccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEE
Confidence 789999999999999999999999986511 0 111224567889999986 79999999999
Q ss_pred EEecccCCCCCCcccHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~ 80 (87)
.+++++|+|++||++|..|+
T Consensus 518 ~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 518 EVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred EEeccCCCCCccccchHhhc
Confidence 99999999999999999885
No 85
>PRK13383 acyl-CoA synthetase; Provisional
Probab=99.63 E-value=2.5e-15 Score=100.01 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=67.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||.+|.+||.|. +....+...+.+++..+++++++.|+.|..+.
T Consensus 417 R~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 496 (516)
T PRK13383 417 REDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDIN 496 (516)
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEE
Confidence 88999999999999999999999998651 11112223456789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHH
Q 046846 62 LWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~ 80 (87)
+++++|+|++||++|+.|.
T Consensus 497 ~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 497 IVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EeCCCCCCCCCcCcHHHhC
Confidence 9999999999999999873
No 86
>PRK07787 acyl-CoA synthetase; Validated
Probab=99.63 E-value=1.9e-15 Score=99.62 Aligned_cols=81 Identities=37% Similarity=0.544 Sum_probs=68.6
Q ss_pred Cc-cceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TS-ADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~-~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+ |++++++|.+|+|.+||++|..++.+.. . ...+...+.+++.+++++.++.++.|..+.+
T Consensus 371 R~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 450 (471)
T PRK07787 371 RESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELIDFVAQQLSVHKRPREVRF 450 (471)
T ss_pred CCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHHHHHHhhcccccCCcEEEE
Confidence 64 8999999999999999999999986511 0 0112345778899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~ 81 (87)
++++|+|.+||++|+.|++
T Consensus 451 ~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 451 VDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred eccCCCCCCccccHHHhcc
Confidence 9999999999999999875
No 87
>PRK12316 peptide synthase; Provisional
Probab=99.63 E-value=9.2e-16 Score=119.99 Aligned_cols=82 Identities=27% Similarity=0.452 Sum_probs=70.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+||+||++|+||+|.|||.+|.++|+|.. ....+...+.+++++++++.|+.|++|..+.+
T Consensus 2402 R~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v~~~~~~~~~~~~l~~~l~~~Lp~~~vP~~~~~ 2481 (5163)
T PRK12316 2402 RIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYVVPDDAAEDLLAELRAWLAARLPAYMVPAHWVV 2481 (5163)
T ss_pred CCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEEEecCCCccCHHHHHHHHHhhCchhcCcceEee
Confidence 899999999999999999999999996611 01122345678899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~ 82 (87)
+++||+|++||++|+.|.+.
T Consensus 2482 l~~lP~t~~GKidR~~L~~~ 2501 (5163)
T PRK12316 2482 LERLPLNPNGKLDRKALPKP 2501 (5163)
T ss_pred ecccCCCCCCccCHhhcCCC
Confidence 99999999999999998654
No 88
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.63 E-value=4.2e-15 Score=98.42 Aligned_cols=85 Identities=29% Similarity=0.487 Sum_probs=69.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCC---CCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPV---LSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~---~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+++|.+|+|.+||.+|.++|.+.. ....+.. ...+++.++++.+++.++.|.
T Consensus 390 R~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~ 469 (502)
T PRK08276 390 RKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPR 469 (502)
T ss_pred cCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCc
Confidence 789999999999999999999999985510 0011111 123478999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+++++|+|++||++|..|++.+..
T Consensus 470 ~i~~~~~lP~t~~GKi~r~~L~~~~~~ 496 (502)
T PRK08276 470 SIDFEDELPRTPTGKLYKRRLRDRYWE 496 (502)
T ss_pred EEEEecCCCCCcccchhHHHHHHHHHh
Confidence 999999999999999999999999754
No 89
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=99.62 E-value=1.6e-15 Score=102.87 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHh-CCCccc-----cc---------------CCC-CCCCHHHHHHHHHhhCC-CCCC-
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE-KKAKRD-----QE---------------KSK-PVLSLQELCTWAKDKLA-PYKL- 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~-~~~v~~-----~~---------------~~~-~~~~~~~l~~~~~~~l~-~~~~- 56 (87)
|+||+||++|++|+|.|||++|.. ||.|.. .. ..+ ...+.+++.+++++.+. .|++
T Consensus 496 R~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 575 (612)
T PRK12476 496 RIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLA 575 (612)
T ss_pred ccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCc
Confidence 899999999999999999999985 785521 00 011 12455778888888877 4777
Q ss_pred CceEEEec--ccCCCCCCcccHHHHHHHHHhc
Q 046846 57 PTRLFLWD--SLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 57 p~~i~~v~--~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
|..+.+++ +||+|++||++|+.|++.+...
T Consensus 576 p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~ 607 (612)
T PRK12476 576 VADVRLVPAGAIPRTTSGKLARRACRAQYLDG 607 (612)
T ss_pred ceEEEEECCCCcCcCCchHHHHHHHHHHHHcC
Confidence 68899987 6999999999999999988653
No 90
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.62 E-value=2.1e-15 Score=108.57 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=68.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc----c---------------------CCCCCCCHHHHHHHHHhhCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ----E---------------------KSKPVLSLQELCTWAKDKLAPYK 55 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~----~---------------------~~~~~~~~~~l~~~~~~~l~~~~ 55 (87)
|.|++||++|++|+|.|||++|.+||.|... . ..+...+.+++.++++++|+.|+
T Consensus 858 R~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~ 937 (1296)
T PRK10252 858 RSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHM 937 (1296)
T ss_pred ccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhc
Confidence 8899999999999999999999999965211 0 01113456889999999999999
Q ss_pred CCceEEEecccCCCCCCcccHHHHHH
Q 046846 56 LPTRLFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 56 ~p~~i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
+|..+..++++|+|++||++|+.|..
T Consensus 938 ~P~~~~~~~~lP~t~~GKidr~~L~~ 963 (1296)
T PRK10252 938 VPVVLLQLDQLPLSANGKLDRKALPL 963 (1296)
T ss_pred CCcEEEEecCCCCCCCcChhHHhcCC
Confidence 99999999999999999999999864
No 91
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.62 E-value=2.5e-15 Score=107.00 Aligned_cols=85 Identities=24% Similarity=0.229 Sum_probs=69.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc-----cc-ccC------------CCCCCCHHHHHHHHHh-hCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK-----RD-QEK------------SKPVLSLQELCTWAKD-KLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v-----~~-~~~------------~~~~~~~~~l~~~~~~-~l~~~~~p~~i~ 61 (87)
|.||+||++|++|+|.|||++|.+||++ .+ ... .....+.+++.+++.+ .++.|+.|..+.
T Consensus 1040 R~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~l~~~~~~~~l~~~~~P~~i~ 1119 (1146)
T PRK08633 1040 RYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDVEELKRAIKESGLPNLWKPSRYF 1119 (1146)
T ss_pred cccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccCHHHHHHHHHhcCCCcccCCcEEE
Confidence 8899999999999999999999999832 11 000 0123456788888875 699999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++++|+|++||++|+.|++.+.+
T Consensus 1120 ~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633 1120 KVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred EecCcCCCCCCCCcHHHHHHHHHH
Confidence 999999999999999999988654
No 92
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.62 E-value=5e-15 Score=99.37 Aligned_cols=85 Identities=29% Similarity=0.511 Sum_probs=71.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|.||+|+++|.+|+|.+||++|..++.+.. ........+.+++.+++.+.++.|+.|..+.+
T Consensus 453 R~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~ 532 (560)
T PRK08974 453 RKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRRHLTGYKVPKLVEF 532 (560)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEE
Confidence 789999999999999999999999986511 01112234567899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++|+|.+||++|+.|++....
T Consensus 533 ~~~lP~t~~GK~~r~~l~~~~~~ 555 (560)
T PRK08974 533 RDELPKSNVGKILRRELRDEARA 555 (560)
T ss_pred hhhCCCCCCCcEeHHHHHHHHHh
Confidence 99999999999999999987654
No 93
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.62 E-value=3e-15 Score=98.75 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=68.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc--------------cCCCCC-----CCHHHHHHHHHhhCCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ--------------EKSKPV-----LSLQELCTWAKDKLAPYKLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~--------------~~~~~~-----~~~~~l~~~~~~~l~~~~~p 57 (87)
|.||+|+++|.+|+|.+||+.+..+|.|. +. ...... .....+.+++.++++.++.|
T Consensus 396 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P 475 (503)
T PRK04813 396 RIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIP 475 (503)
T ss_pred cccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCC
Confidence 78999999999999999999999999651 10 000101 11245889999999999999
Q ss_pred ceEEEecccCCCCCCcccHHHHHHHHH
Q 046846 58 TRLFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 58 ~~i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
..+.+++++|+|.+||++|..|++.+.
T Consensus 476 ~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 476 RKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred eEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 999999999999999999999998875
No 94
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.61 E-value=2.2e-15 Score=98.03 Aligned_cols=79 Identities=32% Similarity=0.475 Sum_probs=66.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|.||+|+++|.+|+|.+||++|..++.|.. . .......+...+.+++++.++.|++|..+.++
T Consensus 341 R~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~ 420 (436)
T TIGR01923 341 RRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQAKLIAYLTEKLAKYKVPIAFEKL 420 (436)
T ss_pred cccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCCCHHHHHHHHHHhhhCCCCCeEEEEe
Confidence 789999999999999999999999985511 0 00112356778999999999999999999999
Q ss_pred cccCCCCCCcccHHHH
Q 046846 64 DSLPRNAMGKVNKKEL 79 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l 79 (87)
++||+|++||++|..|
T Consensus 421 ~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 421 DELPYNASGKILRNQL 436 (436)
T ss_pred cCCCCCCCCceecccC
Confidence 9999999999999764
No 95
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.60 E-value=4.9e-15 Score=99.08 Aligned_cols=80 Identities=28% Similarity=0.483 Sum_probs=67.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc-------------------cCCC-CCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ-------------------EKSK-PVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~-------------------~~~~-~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.||+|+++|.+|+|.+||.++.+|+.|... ...+ ...+.+++.++++++|+.|++|..+
T Consensus 442 R~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i 521 (541)
T TIGR03205 442 RKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAV 521 (541)
T ss_pred cccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEE
Confidence 7899999999999999999999999865110 0111 1246788999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELK 80 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~ 80 (87)
.+++++|+|++||++|..|+
T Consensus 522 ~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 522 EFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred EEeccCCCCcccceeHhhcC
Confidence 99999999999999998763
No 96
>PRK08162 acyl-CoA synthetase; Validated
Probab=99.59 E-value=1.4e-14 Score=96.87 Aligned_cols=84 Identities=29% Similarity=0.472 Sum_probs=70.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|.||+|+++|.+|+|.+||++|..+|.|.. ....+...+.+++.+++++.++.|++|..+.
T Consensus 437 R~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 516 (545)
T PRK08162 437 RSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVV 516 (545)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEE
Confidence 789999999999999999999999996511 0112223567889999999999999999987
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+ .++|+|++||++|..|++.+..
T Consensus 517 ~-~~iP~t~~gK~~r~~l~~~~~~ 539 (545)
T PRK08162 517 F-GELPKTSTGKIQKFVLREQAKS 539 (545)
T ss_pred e-cccCCCCCcCCcHHHHHHHHhh
Confidence 5 6899999999999999998764
No 97
>PRK05691 peptide synthase; Validated
Probab=99.59 E-value=5.9e-15 Score=114.70 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=69.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c---------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q---------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~---------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+|++||++|++|+|.|||.+|.+||.|.. . ...+.....+++.+++.++|+.|++|..+..
T Consensus 1526 R~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~ 1605 (4334)
T PRK05691 1526 RLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIR 1605 (4334)
T ss_pred ccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccccCCcEEEE
Confidence 899999999999999999999999996611 0 0112234567899999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~ 81 (87)
++++|+|++||++|+.|..
T Consensus 1606 ~~~lP~t~~GKidr~~L~~ 1624 (4334)
T PRK05691 1606 LDQMPLGPSGKLDRRALPE 1624 (4334)
T ss_pred ccccCCCCCCCcChhhcCc
Confidence 9999999999999999865
No 98
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=99.59 E-value=1.3e-14 Score=97.14 Aligned_cols=85 Identities=32% Similarity=0.543 Sum_probs=70.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cC-CCCCCCHHHHHHHHH-hhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EK-SKPVLSLQELCTWAK-DKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~-~~~~~~~~~l~~~~~-~~l~~~~~p~~ 59 (87)
|.||+|+++|.+|+|.+||++|..+|.|.. . .. .....+.+++.+++. ..++.+++|..
T Consensus 431 R~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~ 510 (547)
T PRK06087 431 RKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEH 510 (547)
T ss_pred cchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeE
Confidence 789999999999999999999999985511 0 00 123345678888875 57999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|.+++++|+|.+||++|+.|++.+..
T Consensus 511 i~~v~~iP~t~sGK~~r~~l~~~~~~ 536 (547)
T PRK06087 511 IVVIDKLPRTASGKIQKFLLRKDIMR 536 (547)
T ss_pred EEEeccCCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999999999988764
No 99
>PRK09192 acyl-CoA synthetase; Validated
Probab=99.58 E-value=5.9e-15 Score=99.54 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=68.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-----c-c--------------cCCCCCCCHHHHHHHHHhhCC-CCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-----D-Q--------------EKSKPVLSLQELCTWAKDKLA-PYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-----~-~--------------~~~~~~~~~~~l~~~~~~~l~-~~~~p~~ 59 (87)
|+||+|+++|++|+|.|||++|..||.|. + . ...+...+.+++.+++++.+. .++.|..
T Consensus 459 R~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 538 (579)
T PRK09192 459 RAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAA 538 (579)
T ss_pred ccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCce
Confidence 88999999999999999999999998652 0 0 011122345678999998874 6888988
Q ss_pred EEEec--ccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWD--SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~--~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+++ +||+|.+||++|+.|++.+..
T Consensus 539 i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 539 VELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred EEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 88885 899999999999999998865
No 100
>PRK05691 peptide synthase; Validated
Probab=99.58 E-value=4.4e-15 Score=115.40 Aligned_cols=82 Identities=27% Similarity=0.372 Sum_probs=67.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc---cc--------------cCCC----CCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR---DQ--------------EKSK----PVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~---~~--------------~~~~----~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+|++||++|++|.|.|||++|..+|.|. +. .... .....+.++.+++++||.|++|..
T Consensus 4123 R~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~ 4202 (4334)
T PRK05691 4123 RIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLH 4202 (4334)
T ss_pred ccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcc
Confidence 89999999999999999999999999661 10 0000 111236788999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHH
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
+..+++||+|++||+||+.|...
T Consensus 4203 ~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4203 WLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred eeecccCCCCCCCcccHhhcCCC
Confidence 99999999999999999998753
No 101
>PRK12467 peptide synthase; Provisional
Probab=99.58 E-value=8.7e-15 Score=113.33 Aligned_cols=82 Identities=28% Similarity=0.443 Sum_probs=69.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------c-C-----CCCCCCHHHHHHHHHhhCCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------E-K-----SKPVLSLQELCTWAKDKLAPYKLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~-~-----~~~~~~~~~l~~~~~~~l~~~~~p 57 (87)
|+||+||++|++|+|.|||++|.+||.|.. . . . .......+++.+++++.|+.|++|
T Consensus 911 R~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP 990 (3956)
T PRK12467 911 RMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVP 990 (3956)
T ss_pred cccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecccccccccccCHHHHHHHHHhhCchhcCC
Confidence 899999999999999999999999996610 0 0 0 112345678999999999999999
Q ss_pred ceEEEecccCCCCCCcccHHHHHHH
Q 046846 58 TRLFLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 58 ~~i~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
..+.++++||+|++||++|+.|.+.
T Consensus 991 ~~~~~l~~lP~t~~GKidR~~L~~~ 1015 (3956)
T PRK12467 991 AHLLLLDSLPLTPNGKLDRKALPKP 1015 (3956)
T ss_pred ceEeeecccCCCCCCCcCHhhcCCc
Confidence 9999999999999999999998764
No 102
>PRK09188 serine/threonine protein kinase; Provisional
Probab=99.57 E-value=1.6e-14 Score=93.62 Aligned_cols=74 Identities=22% Similarity=0.197 Sum_probs=61.8
Q ss_pred CC---eeecHHHHHHHHHhCCCccc----cc-------------CCCCCCCHHHHHHHHHhhCCCCCCCceEEEecccCC
Q 046846 9 GG---YKLSALEIESVLLEKKAKRD----QE-------------KSKPVLSLQELCTWAKDKLAPYKLPTRLFLWDSLPR 68 (87)
Q Consensus 9 ~G---~~i~p~eIE~~l~~~~~v~~----~~-------------~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~ 68 (87)
+| +||+|. ||++|.+||.|.. .. ......+.+++.++|+++|+. ++|..+.++++||+
T Consensus 234 ~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~ 311 (365)
T PRK09188 234 TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELPADEKSLRARLAGAKPP-KPPEHIQPVAALPR 311 (365)
T ss_pred CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCHHHHHHHHHhhchh-cCCcEEEEECCCCC
Confidence 67 899999 9999999997611 00 011235678999999999999 99999999999999
Q ss_pred CCCCcccHHHHHHHHH
Q 046846 69 NAMGKVNKKELKNQLA 84 (87)
Q Consensus 69 t~~gKi~r~~l~~~~~ 84 (87)
|++||++|+.|+.++.
T Consensus 312 t~~GKi~R~~Lr~~~~ 327 (365)
T PRK09188 312 DADGTVRDDILRLIAM 327 (365)
T ss_pred CCCCCccHHHHHHHhh
Confidence 9999999999998764
No 103
>PLN02479 acetate-CoA ligase
Probab=99.56 E-value=2.8e-14 Score=96.08 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=68.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCC-----CCCHHHHHHHHHhhCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKP-----VLSLQELCTWAKDKLAPYKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~-----~~~~~~l~~~~~~~l~~~~~ 56 (87)
|.||+|+++|.+|+|.+||.+|..||.+.. . ...+. ....+++.++++++|+.|+.
T Consensus 451 R~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 530 (567)
T PLN02479 451 RSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWV 530 (567)
T ss_pred cccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccC
Confidence 789999999999999999999999985510 0 00111 12346789999999999999
Q ss_pred CceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 57 PTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 57 p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|..+.+ +++|+|++||++|..|++.+..
T Consensus 531 P~~~~~-~~iP~t~~gKv~r~~L~~~~~~ 558 (567)
T PLN02479 531 PKSVVF-GPLPKTATGKIQKHVLRAKAKE 558 (567)
T ss_pred CceEEe-ccCCCCCccCeeHHHHHHHHHh
Confidence 999877 6799999999999999887654
No 104
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=99.53 E-value=3.5e-14 Score=94.23 Aligned_cols=81 Identities=35% Similarity=0.552 Sum_probs=67.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCC---CCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSK---PVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~---~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|.||+|+.+|.+|+|.+||++|.+++++.. . ...+ .....+.+..+++.+|+.++.|.
T Consensus 405 R~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~ 484 (508)
T TIGR02262 405 RTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPR 484 (508)
T ss_pred cccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCc
Confidence 789999999999999999999999986511 0 0011 12335788999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHH
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
.+.+++++|+|++||++|..|++
T Consensus 485 ~i~~~~~iP~t~~gKi~r~~l~~ 507 (508)
T TIGR02262 485 WIVFVDDLPKTATGKIQRFKLRE 507 (508)
T ss_pred eEEEecCCCCCCCCcEehhhccC
Confidence 99999999999999999998864
No 105
>PRK05850 acyl-CoA synthetase; Validated
Probab=99.47 E-value=2.2e-13 Score=91.78 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=61.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-----------------cccCCCCCCC------HHHHHHHHHhhCCCC--C
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-----------------DQEKSKPVLS------LQELCTWAKDKLAPY--K 55 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-----------------~~~~~~~~~~------~~~l~~~~~~~l~~~--~ 55 (87)
|+||+||++|++|+|.|||++|.+||.+. +........+ ...+.+.+...+..+ .
T Consensus 457 R~~d~i~~~G~~i~p~eIE~~l~~~~~~~~~v~~v~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~ 536 (578)
T PRK05850 457 RIKDLLIVDGRNHYPDDIEATIQEITGGRVAAISVPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGL 536 (578)
T ss_pred ccccEEEECCeecCHHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999987431 0011111111 234555555544432 3
Q ss_pred CCceEEEec--ccCCCCCCcccHHHHHHHHHhc
Q 046846 56 LPTRLFLWD--SLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 56 ~p~~i~~v~--~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.|..+.+++ .||+|.+||++|+.+++.|...
T Consensus 537 ~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 537 SVADLVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred CceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 577777775 8999999999999999998754
No 106
>PLN02736 long-chain acyl-CoA synthetase
Probab=99.45 E-value=1.3e-13 Score=94.37 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCccc---ccC-------------CC--------CCCCHHHHHHHHH-------
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRD---QEK-------------SK--------PVLSLQELCTWAK------- 48 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~---~~~-------------~~--------~~~~~~~l~~~~~------- 48 (87)
|+||+||+ +|+||+|.|||++|..||.|.. ... .+ ...+...+.++++
T Consensus 508 R~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (651)
T PLN02736 508 RKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAA 587 (651)
T ss_pred echhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHH
Confidence 88999996 7999999999999999996611 000 00 0111112222222
Q ss_pred -----------hhCCCCCCCceEEEecccC------CCCCCcccHHHHHHHHHh
Q 046846 49 -----------DKLAPYKLPTRLFLWDSLP------RNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 49 -----------~~l~~~~~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~ 85 (87)
..|+.|++|..|.++++.+ +|++||++|+.+++.|..
T Consensus 588 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~ 641 (651)
T PLN02736 588 VLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAK 641 (651)
T ss_pred HHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHH
Confidence 2599999999999998775 799999999999998864
No 107
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.41 E-value=5.5e-13 Score=89.25 Aligned_cols=84 Identities=13% Similarity=0.254 Sum_probs=63.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c------c----------CCCCCCC---HHHHHHHHHhhCCCC--CC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q------E----------KSKPVLS---LQELCTWAKDKLAPY--KL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~------~----------~~~~~~~---~~~l~~~~~~~l~~~--~~ 56 (87)
|.||+|+++|.+|+|.+||++|..||.|.. . . ......+ ...+.+++++.+..+ ..
T Consensus 435 R~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 514 (545)
T PRK07768 435 RVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVR 514 (545)
T ss_pred cccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999986521 0 0 0001111 234666777765543 57
Q ss_pred CceEEEec--ccCCCCCCcccHHHHHHHHH
Q 046846 57 PTRLFLWD--SLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 57 p~~i~~v~--~~p~t~~gKi~r~~l~~~~~ 84 (87)
|..+.+++ +||+|++||++|+.|++.|.
T Consensus 515 p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 515 PRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred ccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 88999987 89999999999999998764
No 108
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=2.9e-12 Score=90.99 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=69.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc------------------cc--cCCCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR------------------DQ--EKSKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~------------------~~--~~~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|.|++||.+|+++.+.||+.++..||.+. +. ...........|++++...|+.|++|..+
T Consensus 475 R~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~ 554 (1032)
T KOG1178|consen 475 RADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLV 554 (1032)
T ss_pred eccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhHHHHHHhhcccccceecceEE
Confidence 78999999999999999999999998440 00 11122334567999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
+.++.+|+|++||+|+++|...
T Consensus 555 V~l~~vPl~~~GKvDkkaL~~~ 576 (1032)
T KOG1178|consen 555 VPLAKVPLNPNGKVDKKALLEY 576 (1032)
T ss_pred EEhhhCCcCCCCCcChhhhhhh
Confidence 9999999999999999999883
No 109
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=99.15 E-value=2e-10 Score=79.61 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=60.5
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCcccc---cCC-----------------------CCC-CC----------HHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRDQ---EKS-----------------------KPV-LS----------LQE 42 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~~---~~~-----------------------~~~-~~----------~~~ 42 (87)
|+||+||. +|++|+|++||++|.+||.|... ... +.. .+ .+.
T Consensus 556 R~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (696)
T PLN02387 556 RKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKE 635 (696)
T ss_pred cccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHH
Confidence 89999996 79999999999999999966110 000 000 00 112
Q ss_pred HHHHH-----HhhCCCCCCCceEEEecc------cCCCCCCcccHHHHHHHHHh
Q 046846 43 LCTWA-----KDKLAPYKLPTRLFLWDS------LPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 43 l~~~~-----~~~l~~~~~p~~i~~v~~------~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+.+ +..|..|.+|+.|.++++ --.|++.|++|..+.+.|..
T Consensus 636 i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~ 689 (696)
T PLN02387 636 VQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKD 689 (696)
T ss_pred HHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHH
Confidence 22222 336999999999999863 34789999999999999875
No 110
>PLN02614 long-chain acyl-CoA synthetase
Probab=99.14 E-value=9.1e-11 Score=80.91 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCcccc---------------cCC-----------CCCCC----------HHHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRDQ---------------EKS-----------KPVLS----------LQEL 43 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~~---------------~~~-----------~~~~~----------~~~l 43 (87)
|+||+||. +|+||+|.|||++|.+||.|... ... +...+ .+.+
T Consensus 517 R~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 596 (666)
T PLN02614 517 RKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFI 596 (666)
T ss_pred cchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHH
Confidence 89999995 89999999999999999965100 000 00001 1122
Q ss_pred HHHH-----HhhCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 44 CTWA-----KDKLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 44 ~~~~-----~~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+ +..|+.|.+++.|.+++ +-.+|+++|++|..+.+.|..
T Consensus 597 ~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~ 649 (666)
T PLN02614 597 LGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQS 649 (666)
T ss_pred HHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHH
Confidence 2222 34599999999999986 235899999999999998864
No 111
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=99.14 E-value=2e-10 Score=79.12 Aligned_cols=85 Identities=9% Similarity=0.089 Sum_probs=60.8
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCccc----ccC----------------------CCCCCCH----------HHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRD----QEK----------------------SKPVLSL----------QEL 43 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~----~~~----------------------~~~~~~~----------~~l 43 (87)
|+||+||. +|+||+|++||++|.+||.|.. ... .+...+. ..+
T Consensus 514 R~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (660)
T PLN02861 514 RKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYI 593 (660)
T ss_pred ccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHH
Confidence 89999995 8999999999999999996511 000 0000011 123
Q ss_pred HHHHHh-----hCCCCCCCceEEEec-cc-----CCCCCCcccHHHHHHHHHh
Q 046846 44 CTWAKD-----KLAPYKLPTRLFLWD-SL-----PRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 44 ~~~~~~-----~l~~~~~p~~i~~v~-~~-----p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++. .+..+..+..+.+.+ .| .+|+++|++|..+.+.|..
T Consensus 594 ~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02861 594 LDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKD 646 (660)
T ss_pred HHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHH
Confidence 333332 378888999998865 45 8999999999999998865
No 112
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=99.09 E-value=1e-10 Score=60.02 Aligned_cols=57 Identities=39% Similarity=0.577 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCcccc----cC-C--CC------CCCHHHHHHHHHhhCCCCCCCce--EEEecc-cCCCCCCc
Q 046846 17 EIESVLLEKKAKRDQ----EK-S--KP------VLSLQELCTWAKDKLAPYKLPTR--LFLWDS-LPRNAMGK 73 (87)
Q Consensus 17 eIE~~l~~~~~v~~~----~~-~--~~------~~~~~~l~~~~~~~l~~~~~p~~--i~~v~~-~p~t~~gK 73 (87)
|||++|.+||+|... .. . +. ..+.+++.++++++|++|++|+. +..+++ ||+|+|||
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVLDEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEHHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEeeecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 799999999976110 00 0 00 01448899999999999999954 444466 99999998
No 113
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=98.97 E-value=4.4e-10 Score=76.69 Aligned_cols=85 Identities=21% Similarity=0.189 Sum_probs=60.3
Q ss_pred CccceEE-eCCeeec--HHHHHHHHHhCCCcc---c------------ccCCC---------------CCCCHHHHHHHH
Q 046846 1 TSADIMK-VGGYKLS--ALEIESVLLEKKAKR---D------------QEKSK---------------PVLSLQELCTWA 47 (87)
Q Consensus 1 R~~d~i~-~~G~~i~--p~eIE~~l~~~~~v~---~------------~~~~~---------------~~~~~~~l~~~~ 47 (87)
|+||+|+ .+|++|+ |.|||.++..||.|. + ....+ ...+.+++.+++
T Consensus 465 R~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 544 (614)
T PRK08180 465 RIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAF 544 (614)
T ss_pred chhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHH
Confidence 7788887 6898766 788999999999651 0 00000 012335678888
Q ss_pred HhhCCCCC--------CCceEEEecccCCCC------CCcccHHHHHHHHHh
Q 046846 48 KDKLAPYK--------LPTRLFLWDSLPRNA------MGKVNKKELKNQLAA 85 (87)
Q Consensus 48 ~~~l~~~~--------~p~~i~~v~~~p~t~------~gKi~r~~l~~~~~~ 85 (87)
.+.|+.++ +|..+.+++++|+|. +||+.|..+.+.|..
T Consensus 545 ~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~ 596 (614)
T PRK08180 545 RERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAA 596 (614)
T ss_pred HHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHH
Confidence 88777776 899999999888865 457788888887764
No 114
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=98.95 E-value=2.9e-09 Score=69.92 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=51.1
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-----cccCC--------------CCC-----CC----HHHHHHHHHhhCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-----DQEKS--------------KPV-----LS----LQELCTWAKDKLA 52 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-----~~~~~--------------~~~-----~~----~~~l~~~~~~~l~ 52 (87)
|.||+|+++|.+|+|.+||.+|..||.|. ..... +.. .+ .++|..++++.+.
T Consensus 316 R~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 395 (422)
T TIGR02155 316 RSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVG 395 (422)
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccC
Confidence 88999999999999999999999998662 10000 100 01 3456677777666
Q ss_pred CCCCCceEEEe--cccCCCCCCcccHH
Q 046846 53 PYKLPTRLFLW--DSLPRNAMGKVNKK 77 (87)
Q Consensus 53 ~~~~p~~i~~v--~~~p~t~~gKi~r~ 77 (87)
.+ ..+.++ ++||+|+ ||++|.
T Consensus 396 ~~---~~v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 396 VS---MDVHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred cE---EEEEEECCCCccCCC-CCceEE
Confidence 54 246665 5999987 999763
No 115
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=98.94 E-value=2.4e-09 Score=74.25 Aligned_cols=85 Identities=7% Similarity=0.007 Sum_probs=60.0
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCccc-----ccC-----------CC------------CCCC----------HH
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKRD-----QEK-----------SK------------PVLS----------LQ 41 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~~-----~~~-----------~~------------~~~~----------~~ 41 (87)
|+||+|| ++|++|+|++||+++.+||.|.. ... .+ -... .+
T Consensus 557 R~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (700)
T PTZ00216 557 RVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQK 636 (700)
T ss_pred ehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHH
Confidence 8899998 89999999999999999996631 000 00 0000 11
Q ss_pred HHHHHH-----HhhCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 42 ELCTWA-----KDKLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 42 ~l~~~~-----~~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+.+ +..+..|..++.+.+++ .-..|+++|++|+.+.+.|..
T Consensus 637 ~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~ 691 (700)
T PTZ00216 637 KATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYAD 691 (700)
T ss_pred HHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHH
Confidence 122222 23577888999999884 456799999999999998864
No 116
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=98.92 E-value=3.1e-09 Score=73.37 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=59.8
Q ss_pred CccceEEe-CCeeecHHHHHHHHHhCCCccc---ccCC-----------------------CCCCC----------HHHH
Q 046846 1 TSADIMKV-GGYKLSALEIESVLLEKKAKRD---QEKS-----------------------KPVLS----------LQEL 43 (87)
Q Consensus 1 R~~d~i~~-~G~~i~p~eIE~~l~~~~~v~~---~~~~-----------------------~~~~~----------~~~l 43 (87)
|+||+||. +|++|+|++||+++.+||.|.. .... +.... .+.+
T Consensus 514 R~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 593 (660)
T PLN02430 514 RKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHI 593 (660)
T ss_pred cccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHH
Confidence 88999995 7999999999999999996510 0000 00000 1112
Q ss_pred HHH---H--HhhCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 44 CTW---A--KDKLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 44 ~~~---~--~~~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+. + +..|+.|.+++.+.+.+ .-.+|+++|++|..+.+.|..
T Consensus 594 ~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~ 646 (660)
T PLN02430 594 LSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQV 646 (660)
T ss_pred HHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHH
Confidence 222 2 23599999999999875 346999999999999998864
No 117
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=98.87 E-value=1.5e-09 Score=73.38 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=70.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc--------------------ccccCCCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK--------------------RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v--------------------~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|..|.+...|+||+..|||+.|.....+ .+...++.+.+...+..+++..||+|.+|..+
T Consensus 509 RtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~Fl 588 (649)
T KOG1179|consen 509 RTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFL 588 (649)
T ss_pred cCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHH
Confidence 7889999999999999999999987522 11224455677889999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
++.+++++|.+-|..+..|.+.
T Consensus 589 Rl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 589 RLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred HHHhhhhcccchhhHHHHHHHc
Confidence 9999999999999999998875
No 118
>PRK12582 acyl-CoA synthetase; Provisional
Probab=98.80 E-value=9.5e-09 Score=70.36 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=56.5
Q ss_pred CccceEE-eCCeeecHHHHH--HHHHhCCCcc---c-cc-------------------CCCC------CCCHHHHHHHHH
Q 046846 1 TSADIMK-VGGYKLSALEIE--SVLLEKKAKR---D-QE-------------------KSKP------VLSLQELCTWAK 48 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE--~~l~~~~~v~---~-~~-------------------~~~~------~~~~~~l~~~~~ 48 (87)
|+||+|+ .+|++|+|.+|| .++..||.|. + .. .... ..+.+++.+++.
T Consensus 477 R~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 556 (624)
T PRK12582 477 RVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILR 556 (624)
T ss_pred cchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHH
Confidence 7889998 589999999885 6888898651 0 00 0000 012234555555
Q ss_pred hhC-------CCCC-CCceEEEecccC------CCCCCcccHHHHHHHHHh
Q 046846 49 DKL-------APYK-LPTRLFLWDSLP------RNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 49 ~~l-------~~~~-~p~~i~~v~~~p------~t~~gKi~r~~l~~~~~~ 85 (87)
..+ +.+. +|..+.+++++| .|++||+.|+.+.+.|..
T Consensus 557 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~ 607 (624)
T PRK12582 557 EGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAA 607 (624)
T ss_pred HHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHH
Confidence 444 4444 999999998765 466778889888888764
No 119
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=98.72 E-value=1.1e-07 Score=66.78 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=58.9
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCcc----------------ccc----------CC------CCC-CC-------
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKR----------------DQE----------KS------KPV-LS------- 39 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~----------------~~~----------~~------~~~-~~------- 39 (87)
|+||+|| .+|++|+|++||+++.+||.|. +.. .. +-. ..
T Consensus 591 R~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~ 670 (746)
T PTZ00342 591 RSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTD 670 (746)
T ss_pred cCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhh
Confidence 8999999 5899999999999999999550 000 00 000 00
Q ss_pred --------HHHHHHH---H--HhhCCCCCCCceEEEec-cc----CCCCCCcccHHHHHHHHHh
Q 046846 40 --------LQELCTW---A--KDKLAPYKLPTRLFLWD-SL----PRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 40 --------~~~l~~~---~--~~~l~~~~~p~~i~~v~-~~----p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.+.+. + +..|..|..++.|.+++ .| -.|++.|++|..+.+.|..
T Consensus 671 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 671 ETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred hhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 1111211 2 23589999999998885 22 4899999999999998863
No 120
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=98.27 E-value=4.9e-07 Score=48.70 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=33.8
Q ss_pred CeeecHHHHHHHHHhCCCcc-----------------cccCCCCCC-----CHHHHHHHHHhhCCC-CCCCceEEEec--
Q 046846 10 GYKLSALEIESVLLEKKAKR-----------------DQEKSKPVL-----SLQELCTWAKDKLAP-YKLPTRLFLWD-- 64 (87)
Q Consensus 10 G~~i~p~eIE~~l~~~~~v~-----------------~~~~~~~~~-----~~~~l~~~~~~~l~~-~~~p~~i~~v~-- 64 (87)
|.||||..||++|.++|.+. +........ ...++...+.+.+.. ..+...+.+++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V~lv~~g 80 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEVELVPPG 80 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEEEEE-TT
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEEEEECCC
Confidence 89999999999999999651 001111111 233444444443332 22344788886
Q ss_pred ccCCCCCCcccH
Q 046846 65 SLPRNAMGKVNK 76 (87)
Q Consensus 65 ~~p~t~~gKi~r 76 (87)
++|+| +||..|
T Consensus 81 tLpr~-~~K~~R 91 (96)
T PF14535_consen 81 TLPRS-EGKAKR 91 (96)
T ss_dssp -S----SSSS-S
T ss_pred CccCC-CCcceE
Confidence 79998 688765
No 121
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=98.15 E-value=1.1e-05 Score=53.90 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=23.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~ 25 (87)
|+|||++++|.||+|.+||++|.++
T Consensus 328 R~dd~~~~~g~~~~p~~ie~~l~~~ 352 (445)
T TIGR03335 328 REAETIWISGVPFNRVDVERAVFQR 352 (445)
T ss_pred ccCceEEECCEEeCHHHHHHHHhcc
Confidence 8999999999999999999999984
No 122
>PTZ00297 pantothenate kinase; Provisional
Probab=98.09 E-value=2.6e-05 Score=58.51 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=57.1
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCcc---------------cc------c-----CCC--------CCCCHHH---
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKR---------------DQ------E-----KSK--------PVLSLQE--- 42 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~---------------~~------~-----~~~--------~~~~~~~--- 42 (87)
|+||+|| .+|++|+|+.||+.+..+|.|. +. . ..+ ...+..+
T Consensus 857 RkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~ 936 (1452)
T PTZ00297 857 PPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVA 936 (1452)
T ss_pred ccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHH
Confidence 8999999 7999999999999999998540 00 0 000 0011111
Q ss_pred -----HHHH---HHh--hCCCCCCCceEEEec------ccCCCCCCcccHHHHHHHHHh
Q 046846 43 -----LCTW---AKD--KLAPYKLPTRLFLWD------SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 43 -----l~~~---~~~--~l~~~~~p~~i~~v~------~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.+. +.. .+..+.+++.+.+++ .--.|++.|++|..+.+.|..
T Consensus 937 ~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~ 995 (1452)
T PTZ00297 937 YASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSS 995 (1452)
T ss_pred hHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHH
Confidence 2222 221 255677888877764 346899999999999998875
No 123
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=97.72 E-value=7.4e-05 Score=52.29 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=56.9
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCc----------------ccccC----------CCCC--------------CC
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAK----------------RDQEK----------SKPV--------------LS 39 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v----------------~~~~~----------~~~~--------------~~ 39 (87)
|+|++|| ..|++|.|+.||++....+.| ++... .+.. ..
T Consensus 548 RkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~v 627 (691)
T KOG1256|consen 548 RKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAV 627 (691)
T ss_pred cccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHH
Confidence 8899999 699999999999999987643 00000 0000 01
Q ss_pred HHHHHHHHHh-hCCCCCCCceEEEe------cccCCCCCCcccHHHHHHHHHh
Q 046846 40 LQELCTWAKD-KLAPYKLPTRLFLW------DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 40 ~~~l~~~~~~-~l~~~~~p~~i~~v------~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
..++..+.++ .+..+..-..|.+. +.--.||+-|++|..+.+.|..
T Consensus 628 l~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~ 680 (691)
T KOG1256|consen 628 LSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKK 680 (691)
T ss_pred HHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHH
Confidence 1223333222 36667777777774 4667799999999999998865
No 124
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=97.57 E-value=7.6e-05 Score=48.36 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=26.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.||+|+++|.+|+|.+||+++..++.|
T Consensus 376 R~~~~i~~~G~~v~~~~ie~~l~~~~~v 403 (408)
T TIGR01733 376 RIDDQVKIRGYRIELGEIEAALLRHPGV 403 (408)
T ss_pred ccCCEEEeCeEEechHHHHHHHhcCcch
Confidence 7899999999999999999999998875
No 125
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=97.51 E-value=0.0005 Score=46.12 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=26.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.|||+++.|++|+|..||.+|.+.+.+
T Consensus 332 R~dD~l~~~G~~vfp~~ie~~l~~~~~~ 359 (438)
T COG1541 332 RSDDMLIVRGVNVFPSQIERVLLQIPEV 359 (438)
T ss_pred ccccEEEECCEEeCHHHHHHHHhcccCC
Confidence 8999999999999999999999998855
No 126
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=97.38 E-value=0.00011 Score=50.44 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=59.2
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCcc----------------cccC----------CCCCC---------------
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAKR----------------DQEK----------SKPVL--------------- 38 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v~----------------~~~~----------~~~~~--------------- 38 (87)
|+||++| -+|+.|+++-||+++...|.|. +... .+-..
T Consensus 536 RKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~ 615 (678)
T KOG1180|consen 536 RKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKA 615 (678)
T ss_pred chhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHH
Confidence 8999999 5999999999999999999551 0000 00000
Q ss_pred CHHHHHHHH-HhhCCCCCCCceEEEecc------cCCCCCCcccHHHHHHHHHh
Q 046846 39 SLQELCTWA-KDKLAPYKLPTRLFLWDS------LPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 39 ~~~~l~~~~-~~~l~~~~~p~~i~~v~~------~p~t~~gKi~r~~l~~~~~~ 85 (87)
...++.+.- .++|..+..|..|++.++ .-.|..-|+.|+.+...|..
T Consensus 616 v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ 669 (678)
T KOG1180|consen 616 VLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKK 669 (678)
T ss_pred HHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHH
Confidence 012333333 446899999999999863 34466679999999988764
No 127
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=96.77 E-value=0.0011 Score=46.25 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=26.0
Q ss_pred CccceEE-eCCeeecHHHHHHHHHhCCCc
Q 046846 1 TSADIMK-VGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 1 R~~d~i~-~~G~~i~p~eIE~~l~~~~~v 28 (87)
|+||+|+ .+|+||.|+.||+.+..+|.|
T Consensus 470 RkK~~i~l~~GknIaP~~IE~~l~~~~~I 498 (613)
T COG1022 470 RKKELIKLSNGKNIAPEPIESKLAKSPLI 498 (613)
T ss_pred cccceEECCCCcccChHHHHHHHhcCCCe
Confidence 8999999 699999999999999999954
No 128
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]
Probab=93.96 E-value=0.17 Score=38.10 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=55.5
Q ss_pred cceEEeCCeeecHHHHHHHHHh-CCCc-------------ccccCCCCCCCHHHHHHHHHhhCCCCC-CCceEEEec--c
Q 046846 3 ADIMKVGGYKLSALEIESVLLE-KKAK-------------RDQEKSKPVLSLQELCTWAKDKLAPYK-LPTRLFLWD--S 65 (87)
Q Consensus 3 ~d~i~~~G~~i~p~eIE~~l~~-~~~v-------------~~~~~~~~~~~~~~l~~~~~~~l~~~~-~p~~i~~v~--~ 65 (87)
++.+-.+|.+.+|.+||.-+.. ||.| .+....++....+-+---++..|..+. +-+-+.+|+ .
T Consensus 1252 ~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~glvVvviE~~gq~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~ 1331 (1363)
T KOG3628|consen 1252 DETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATGLVVVVIECHGQQELADLVPLIVNVVLEEHYIILDVVAFVDKGV 1331 (1363)
T ss_pred cceeeecCcccCcchHHHHHHHhcccccceeeEeeCCeEEEEEEecCchhHhhhhHHHHHHHHhhcceEEEEEEEecCCc
Confidence 5667789999999999987664 7743 111222322222223333455577776 445566665 7
Q ss_pred cCCCCCCcccHHHHHHHHHhc
Q 046846 66 LPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 66 ~p~t~~gKi~r~~l~~~~~~~ 86 (87)
+|+++.|--+|..+.+.|.++
T Consensus 1332 ~p~~~~gEK~R~~I~~~w~~~ 1352 (1363)
T KOG3628|consen 1332 FPRNSRGEKQRAHILDSWLAG 1352 (1363)
T ss_pred cccCCchhhHHHHHHHHHHhc
Confidence 999999999999998887654
No 129
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=81.22 E-value=6.1 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=20.3
Q ss_pred CccceEEe---C--CeeecHHHHHHHHHh-CCCc
Q 046846 1 TSADIMKV---G--GYKLSALEIESVLLE-KKAK 28 (87)
Q Consensus 1 R~~d~i~~---~--G~~i~p~eIE~~l~~-~~~v 28 (87)
|.+|+++. + +.+|+|..++.++.. .+.+
T Consensus 325 R~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i 358 (430)
T TIGR02304 325 RQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLI 358 (430)
T ss_pred ccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCC
Confidence 78999985 3 455699999987554 5554
No 130
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=70.89 E-value=2.9 Score=24.71 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.9
Q ss_pred eEEEecccCCCCCCcccH
Q 046846 59 RLFLWDSLPRNAMGKVNK 76 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r 76 (87)
.-.+|++||.|.+|||..
T Consensus 42 ~~IlV~~~P~Td~gKI~W 59 (157)
T PF06092_consen 42 SDILVKNFPLTDSGKINW 59 (157)
T ss_pred eeeeeecCCCCccchhhH
Confidence 346778999999999975
No 131
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=66.43 E-value=9.4 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.1
Q ss_pred ceEEeCCeeecHHHHHHHHHhC
Q 046846 4 DIMKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 4 d~i~~~G~~i~p~eIE~~l~~~ 25 (87)
..+.++|..+++.+||..+...
T Consensus 50 ~~y~Igg~~~SL~dIe~~ILR~ 71 (117)
T PF04784_consen 50 VRYNIGGQRFSLDDIEHGILRG 71 (117)
T ss_pred eEEEECCEEecHHHHHHhhccC
Confidence 4567999999999999876654
No 132
>smart00426 TEA TEA domain.
Probab=61.85 E-value=6.3 Score=19.97 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=13.9
Q ss_pred CCeeecHHHHHHHHHhC
Q 046846 9 GGYKLSALEIESVLLEK 25 (87)
Q Consensus 9 ~G~~i~p~eIE~~l~~~ 25 (87)
.|.-|.|.+||+++.+.
T Consensus 1 dg~~vWp~~lE~Af~~a 17 (68)
T smart00426 1 DAEGVWSPDIEQAFQEA 17 (68)
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 37889999999888764
No 133
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=58.22 E-value=36 Score=23.15 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=28.9
Q ss_pred CCeeecHHHHHHHHHhCCCc---cc---ccCCCCCCCHHHHHHHHHhh
Q 046846 9 GGYKLSALEIESVLLEKKAK---RD---QEKSKPVLSLQELCTWAKDK 50 (87)
Q Consensus 9 ~G~~i~p~eIE~~l~~~~~v---~~---~~~~~~~~~~~~l~~~~~~~ 50 (87)
-|.-+.|++||++|.+.+.+ .+ ....+--.+..+|...++++
T Consensus 113 wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~ 160 (383)
T COG0075 113 WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEH 160 (383)
T ss_pred CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHc
Confidence 57889999999999987754 11 12233344667787777775
No 134
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=58.13 E-value=23 Score=19.21 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=31.0
Q ss_pred eEEeCCeeecH---HHHHHHHHhCCCcccccCCCCCCCHHHHHHHHHhhCC
Q 046846 5 IMKVGGYKLSA---LEIESVLLEKKAKRDQEKSKPVLSLQELCTWAKDKLA 52 (87)
Q Consensus 5 ~i~~~G~~i~p---~eIE~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~ 52 (87)
++.+|..-+.. .+|+.+|..|+.+-+....+...+..++.+.+.+...
T Consensus 21 vv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ 71 (97)
T PRK10343 21 VVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETG 71 (97)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHC
Confidence 34455555554 6778899999987555445555556667676666544
No 135
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=56.76 E-value=28 Score=18.94 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCcccccCCCCCCCHHHHHHHHHhhCCC
Q 046846 15 ALEIESVLLEKKAKRDQEKSKPVLSLQELCTWAKDKLAP 53 (87)
Q Consensus 15 p~eIE~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~ 53 (87)
..||+++|.++..+-+....+...+..++.+.+.+....
T Consensus 33 i~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a 71 (97)
T COG1534 33 IKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGA 71 (97)
T ss_pred HHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCC
Confidence 478999999999886555555555777888887776544
No 136
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=54.52 E-value=9.7 Score=21.77 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.7
Q ss_pred EEeCCee-ecHHHHHHHHHhCC
Q 046846 6 MKVGGYK-LSALEIESVLLEKK 26 (87)
Q Consensus 6 i~~~G~~-i~p~eIE~~l~~~~ 26 (87)
|+++|.| |.-.++-+++.+..
T Consensus 11 INVGG~nki~MaeLr~~l~~~G 32 (137)
T PF08002_consen 11 INVGGKNKIKMAELREALEDLG 32 (137)
T ss_dssp -SBTTBS---HHHHHHHHHHCT
T ss_pred eecCCCCcccHHHHHHHHHHcC
Confidence 6789976 88899999999886
No 137
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=53.98 E-value=17 Score=14.85 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=16.4
Q ss_pred ccCCCCCCcccHHHHHHHHHh
Q 046846 65 SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 65 ~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+-+..+|+|+..++...+..
T Consensus 8 ~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 8 EFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHSTTSSSEEEHHHHHHHHHH
T ss_pred HHCCCCCCcCCHHHHHHHHHh
Confidence 356788999999999887653
No 138
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.80 E-value=18 Score=16.72 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.7
Q ss_pred EeCCeeecHHHHHHHHHhC
Q 046846 7 KVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 7 ~~~G~~i~p~eIE~~l~~~ 25 (87)
.-.|.+|++..++.+|...
T Consensus 29 ~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 29 QQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HHcCcccCHHHHHHHHHHc
Confidence 4689999999999988753
No 139
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=50.92 E-value=37 Score=18.30 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCcccccCCCCCCCHHHHHHHHHhhCC
Q 046846 16 LEIESVLLEKKAKRDQEKSKPVLSLQELCTWAKDKLA 52 (87)
Q Consensus 16 ~eIE~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~ 52 (87)
.+|+.+|..|+.|-+....+...+..++.+.+.+...
T Consensus 33 ~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~ 69 (95)
T TIGR00253 33 KEIEQALEHRELIKVKVATEDREDKTLIAEALVKETG 69 (95)
T ss_pred HHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHHC
Confidence 6778899999987555444545566667777666544
No 140
>COG3918 Predicted membrane protein [Function unknown]
Probab=46.22 E-value=22 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=14.0
Q ss_pred cccCCCCCCcccHHHHHHH
Q 046846 64 DSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~ 82 (87)
|++|.|++.|+....-.++
T Consensus 63 DqlPsTPsRkVp~qFgaRi 81 (153)
T COG3918 63 DQLPSTPSRKVPPQFGARI 81 (153)
T ss_pred ccCCCCCCCcCChhHhhhh
Confidence 6899999999876554443
No 141
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=43.32 E-value=45 Score=16.72 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.4
Q ss_pred cceEE-eCCeee-cHHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKL-SALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i-~p~eIE~~l~~~ 25 (87)
.|.|. ++|..| +..++...+..+
T Consensus 35 GD~I~~ing~~v~~~~~~~~~l~~~ 59 (82)
T PF13180_consen 35 GDIILAINGKPVNSSEDLVNILSKG 59 (82)
T ss_dssp TEEEEEETTEESSSHHHHHHHHHCS
T ss_pred CcEEEEECCEEcCCHHHHHHHHHhC
Confidence 34444 899999 778888877654
No 142
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=40.54 E-value=28 Score=19.49 Aligned_cols=22 Identities=32% Similarity=0.196 Sum_probs=18.2
Q ss_pred CC--eeecHHHHHHHHHhCCCccc
Q 046846 9 GG--YKLSALEIESVLLEKKAKRD 30 (87)
Q Consensus 9 ~G--~~i~p~eIE~~l~~~~~v~~ 30 (87)
.| ++++++|+|..+..-|.+++
T Consensus 43 ~GTSHkl~~eEle~~lee~~E~iv 66 (121)
T COG1504 43 YGTSHKLALEELEELLEEGPEVIV 66 (121)
T ss_pred cCcccccCHHHHHHHHhcCCcEEE
Confidence 46 89999999999998886533
No 143
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=40.20 E-value=50 Score=16.34 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=10.2
Q ss_pred eCCeeec-HHHHHHHHHh
Q 046846 8 VGGYKLS-ALEIESVLLE 24 (87)
Q Consensus 8 ~~G~~i~-p~eIE~~l~~ 24 (87)
++|..|. ..++...+..
T Consensus 34 Ing~~v~~~~~~~~~l~~ 51 (79)
T cd00986 34 VDGKPFKEAEELIDYIQS 51 (79)
T ss_pred ECCEECCCHHHHHHHHHh
Confidence 6666665 5566655553
No 144
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=37.92 E-value=93 Score=18.81 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=27.1
Q ss_pred ceEEeCCeeecHHHHHHHHHhC--CCcccccCCCCCCCHHHHHHHHHhhCC
Q 046846 4 DIMKVGGYKLSALEIESVLLEK--KAKRDQEKSKPVLSLQELCTWAKDKLA 52 (87)
Q Consensus 4 d~i~~~G~~i~p~eIE~~l~~~--~~v~~~~~~~~~~~~~~l~~~~~~~l~ 52 (87)
|+|-.+|..|+.+-++..-... -+|.+. .+++..-+.|+..+.+++|
T Consensus 24 ~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIf--TDpD~~GekIRk~i~~~vp 72 (174)
T TIGR00334 24 DVIETNGSALKDETINLIKKAQKKQGVIIL--TDPDFPGEKIRKKIEQHLP 72 (174)
T ss_pred eEEEECCCccCHHHHHHHHHHhhcCCEEEE--eCCCCchHHHHHHHHHHCC
Confidence 6777899999888888654433 233332 2222334455555555554
No 145
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=34.74 E-value=54 Score=15.69 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=14.9
Q ss_pred eEEeCCeeecHHHHHHHHHh
Q 046846 5 IMKVGGYKLSALEIESVLLE 24 (87)
Q Consensus 5 ~i~~~G~~i~p~eIE~~l~~ 24 (87)
.|-+.|..-+|.++++.|.+
T Consensus 7 ~Isvs~~~~s~~d~~~~la~ 26 (56)
T PF07338_consen 7 TISVSGNFGSPDDAEEALAK 26 (56)
T ss_dssp EEEEEEECSSHHHHHHHHHH
T ss_pred EEEEccccCCHHHHHHHHHH
Confidence 45667777788888888765
No 146
>COG3753 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.54 E-value=26 Score=20.31 Aligned_cols=41 Identities=27% Similarity=0.191 Sum_probs=25.4
Q ss_pred eeecHHHHHHHHHhCCCcccccCCCCCCCHHHHHHHHHhhCCC
Q 046846 11 YKLSALEIESVLLEKKAKRDQEKSKPVLSLQELCTWAKDKLAP 53 (87)
Q Consensus 11 ~~i~p~eIE~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~ 53 (87)
.-|++++||++|..- ...........+..++.+.+.+.||.
T Consensus 77 qpIs~~ql~~aiG~~--~l~~la~~~Gld~~El~~~Ls~~LP~ 117 (143)
T COG3753 77 QPISAEQLESAIGTD--TLSQLAQKTGLDEQELLKQLSEQLPG 117 (143)
T ss_pred CCCCHHHHHHHhchh--HHHHHHHHhCCCHHHHHHHHHHHhHH
Confidence 358889999988632 22222233456677777777776654
No 147
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=34.49 E-value=67 Score=18.12 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.8
Q ss_pred ceEEeCCeeecHHHHHHHHHh
Q 046846 4 DIMKVGGYKLSALEIESVLLE 24 (87)
Q Consensus 4 d~i~~~G~~i~p~eIE~~l~~ 24 (87)
-+.+++|..|+-.+++..+..
T Consensus 41 ~vA~V~g~~It~~e~~~~~~~ 61 (154)
T PF13624_consen 41 VVAKVNGEKITKSELDRRVQR 61 (154)
T ss_dssp EEEEETTEEEEHHHHHHHHHH
T ss_pred EEEEECCEEeCHHHHHHHHHH
Confidence 356799999999999988775
No 148
>COG1781 PyrI Aspartate carbamoyltransferase, regulatory subunit [Nucleotide transport and metabolism]
Probab=34.13 E-value=49 Score=19.55 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=21.5
Q ss_pred ccceEEeCCeeecHHHHHHHHHhCCC
Q 046846 2 SADIMKVGGYKLSALEIESVLLEKKA 27 (87)
Q Consensus 2 ~~d~i~~~G~~i~p~eIE~~l~~~~~ 27 (87)
.||+||+-|.-++..|+...-.=.|.
T Consensus 55 ~KDiiKIE~~~L~~~e~~~laliaP~ 80 (153)
T COG1781 55 RKDIIKIEGRFLSEEEVNKLALIAPN 80 (153)
T ss_pred CCceEEECCeecCHHHhhhheeeCCC
Confidence 48999999999999999876555564
No 149
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=33.73 E-value=1.6e+02 Score=20.34 Aligned_cols=55 Identities=9% Similarity=-0.000 Sum_probs=41.8
Q ss_pred CCeeecHHHHHHHHHhCCCc-ccccCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 9 GGYKLSALEIESVLLEKKAK-RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 9 ~G~~i~p~eIE~~l~~~~~v-~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
||++|--..|.......|.. .+....+-.++.+.|.+.++..+.--.-++.|.|+
T Consensus 58 GGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi 113 (465)
T KOG1387|consen 58 GGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFI 113 (465)
T ss_pred CcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEE
Confidence 68888888888888888755 33344455889999999999887766677777666
No 150
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=33.33 E-value=18 Score=19.02 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCcccccC--CCC--CCCHHHHHHHHHhhCCCCC----CCceE-EEecccCCCCCCcccHHHHHHHHH
Q 046846 15 ALEIESVLLEKKAKRDQEK--SKP--VLSLQELCTWAKDKLAPYK----LPTRL-FLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 15 p~eIE~~l~~~~~v~~~~~--~~~--~~~~~~l~~~~~~~l~~~~----~p~~i-~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
|.++|.++...-.+..... .+. ..+.+++...+...++... .+..+ .++..+-...+|+|+.......+.
T Consensus 2 ~~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 2 PTQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 5778888777644422222 233 4788888888876543221 11112 223567788899999988777654
No 151
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=32.86 E-value=40 Score=13.07 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=13.4
Q ss_pred ccCCCCCCcccHHHHHHH
Q 046846 65 SLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 65 ~~p~t~~gKi~r~~l~~~ 82 (87)
.+-...+|+++..++.+.
T Consensus 7 ~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 7 QFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHTTTSSSEEEHHHHHHH
T ss_pred HHcCCCCCcCCHHHHHHH
Confidence 345677899999888763
No 152
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=32.85 E-value=18 Score=20.33 Aligned_cols=22 Identities=27% Similarity=0.759 Sum_probs=15.3
Q ss_pred ecccCCCCCCcccHHHHHHHHH
Q 046846 63 WDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
..++|.++.|.+++......|.
T Consensus 13 W~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 13 WNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp HTTS-B-TTS-EEHHHHHHHT-
T ss_pred hhhCcCCccCCEeHHHHHHHcc
Confidence 3579999999999999888775
No 153
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=32.55 E-value=35 Score=22.86 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.5
Q ss_pred cccCCCCCCcccHHHHHHHHH
Q 046846 64 DSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~ 84 (87)
..+|+|+.||+|...+.....
T Consensus 143 ~~v~Lt~~gkiD~~~v~~~i~ 163 (416)
T COG4100 143 KAVPLTADGKIDIQAVKTAIS 163 (416)
T ss_pred eecccccCCcccHHHHHHhcC
Confidence 368999999999999887653
No 154
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=32.22 E-value=54 Score=16.12 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.7
Q ss_pred eCCeeecHHHHHHHHHhC
Q 046846 8 VGGYKLSALEIESVLLEK 25 (87)
Q Consensus 8 ~~G~~i~p~eIE~~l~~~ 25 (87)
+.|..+++.+|+..|...
T Consensus 11 i~gk~lt~~~~~~Ll~~g 28 (62)
T PF13342_consen 11 IAGKKLTDEEVKELLEKG 28 (62)
T ss_pred EcCCCCCHHHHHHHHHcC
Confidence 689999999999999764
No 155
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=31.52 E-value=46 Score=13.32 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.3
Q ss_pred ccCCCCCCcccHHHHHHHHH
Q 046846 65 SLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 65 ~~p~t~~gKi~r~~l~~~~~ 84 (87)
.+-...+|+|+...+...+.
T Consensus 8 ~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 8 MFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HH-TTSSSEEEHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHH
Confidence 34567889999999988776
No 156
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=31.10 E-value=57 Score=14.30 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.2
Q ss_pred eCCeeecHHHHHHHHH
Q 046846 8 VGGYKLSALEIESVLL 23 (87)
Q Consensus 8 ~~G~~i~p~eIE~~l~ 23 (87)
-+|..+...|.++.+.
T Consensus 25 C~G~W~d~~el~~~~e 40 (41)
T PF13453_consen 25 CGGIWFDAGELEKLLE 40 (41)
T ss_pred CCeEEccHHHHHHHHh
Confidence 4789999999998764
No 157
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=30.93 E-value=70 Score=16.96 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=18.1
Q ss_pred cceEEeCCeeecHHHHHHHHHhCC
Q 046846 3 ADIMKVGGYKLSALEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i~~~G~~i~p~eIE~~l~~~~ 26 (87)
+-.|.++|.++.++|+-.....|.
T Consensus 10 ra~Vly~g~k~~i~d~~~~~v~Hg 33 (85)
T PF09014_consen 10 RARVLYNGEKVWIQDLFKNGVLHG 33 (85)
T ss_dssp S-EEEETTEEEEHHHHTTT-BETT
T ss_pred EEEEEECCEEechhhcccCceeeC
Confidence 345779999999999987766675
No 158
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=30.18 E-value=14 Score=18.65 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=15.5
Q ss_pred EEeCCeeecHHHHHHHHHhC
Q 046846 6 MKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~ 25 (87)
+..+|..|++++|.+.+..-
T Consensus 23 f~l~~~~vs~~el~a~lrke 42 (68)
T PF07308_consen 23 FALAGFEVSKAELSAWLRKE 42 (68)
T ss_pred HHHcCCccCHHHHHHHHCCC
Confidence 34688889999998888663
No 159
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=30.00 E-value=18 Score=18.99 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCcccc--cCCC--CCCCHHHHHHHHHhhCCCCCC----CceE-EEecccCCCCCCcccHHHHHHHHH
Q 046846 16 LEIESVLLEKKAKRDQ--EKSK--PVLSLQELCTWAKDKLAPYKL----PTRL-FLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 16 ~eIE~~l~~~~~v~~~--~~~~--~~~~~~~l~~~~~~~l~~~~~----p~~i-~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
.++|.++...-.+... ...+ ...+.+++...+...++.+.. +..+ .++..+.....|+|+......+..
T Consensus 2 ~~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 2 TETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4566666655333222 1222 257888999998888765442 1111 223567788899999988877654
No 160
>PF12503 CMV_1a_C: Cucumber mosaic virus 1a protein C terminal ; InterPro: IPR022184 This domain family is found in viruses, and is approximately 90 amino acids in length. The family is found in association with PF01443 from PFAM, PF01660 from PFAM. There is a conserved GLG sequence motif. 1a protein is the major virulence factor of the (Cucumber mosaic virus. The Ns strain of CMV causes necrotic lesions to Nicotiana spp. while other strains cause systemic mosaic. The determinant of the pathogenesis of these different strains is the specific amino acid residue at the 461 residue of the 1a protein. ; GO: 0008168 methyltransferase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=29.35 E-value=12 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=17.3
Q ss_pred CccceEEe---CCeeecHHHHHHHHH
Q 046846 1 TSADIMKV---GGYKLSALEIESVLL 23 (87)
Q Consensus 1 R~~d~i~~---~G~~i~p~eIE~~l~ 23 (87)
|.|+|+++ +|...+|..+|-.+.
T Consensus 26 ~vD~lVNvHf~~GrWm~P~~~~Y~VG 51 (85)
T PF12503_consen 26 RVDPLVNVHFPNGRWMYPEGYEYMVG 51 (85)
T ss_pred eccccEEEEecCCceecCCCeEEEee
Confidence 56888884 788888888776553
No 161
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=28.99 E-value=1.7e+02 Score=19.73 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=37.9
Q ss_pred cceEEeCCeeecHHHHHHHHHhCCC-cccccCCCCCCCHHHHHHHHHhhCCCCCCCceEEEec
Q 046846 3 ADIMKVGGYKLSALEIESVLLEKKA-KRDQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLWD 64 (87)
Q Consensus 3 ~d~i~~~G~~i~p~eIE~~l~~~~~-v~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~ 64 (87)
|-++++||-+=-+...|..|.+... |......+...+.+.+..++++..+...--..+.++.
T Consensus 77 d~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 77 DLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred ceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 5678899999888999999997754 2222223334455667777776655433323444443
No 162
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=28.99 E-value=45 Score=23.50 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=19.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~ 25 (87)
|.+.++.+.|++++-.+|..++...
T Consensus 394 R~~~~l~l~gEkl~e~~v~~av~~~ 418 (528)
T PF03321_consen 394 RRGQVLSLFGEKLSEEQVQEAVARA 418 (528)
T ss_dssp ETTEEE-SSS--EEHHHHHHHHHHH
T ss_pred cCCceeecceeecCHHHHHHHHHHH
Confidence 5677899999999999999999875
No 163
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=28.64 E-value=48 Score=19.70 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=9.4
Q ss_pred CeeecHHHHHHHHHhC
Q 046846 10 GYKLSALEIESVLLEK 25 (87)
Q Consensus 10 G~~i~p~eIE~~l~~~ 25 (87)
|.-|.|++|++++...
T Consensus 114 GV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 114 GVVVTPEQIEAAVEKY 129 (164)
T ss_dssp T----HHHHHHHHHHH
T ss_pred CeEECHHHHHHHHHHH
Confidence 7788999999887653
No 164
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=27.75 E-value=80 Score=21.43 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=29.7
Q ss_pred CCeeecHHHHHHHHHhC-CCcccccCCCCCCCHHHHHHHHHhh
Q 046846 9 GGYKLSALEIESVLLEK-KAKRDQEKSKPVLSLQELCTWAKDK 50 (87)
Q Consensus 9 ~G~~i~p~eIE~~l~~~-~~v~~~~~~~~~~~~~~l~~~~~~~ 50 (87)
.-.||+|..||++|..- ..|......+...+.+.|.+.+.++
T Consensus 106 ~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~ 148 (374)
T COG0399 106 DTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRH 148 (374)
T ss_pred cccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHc
Confidence 45789999999999874 3444444556667888887777653
No 165
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=27.69 E-value=54 Score=16.96 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=27.0
Q ss_pred cceEEeCCeeecH---HHHHHHHHhCCCcccccCCCCCCCHHHHHHHHHhhC
Q 046846 3 ADIMKVGGYKLSA---LEIESVLLEKKAKRDQEKSKPVLSLQELCTWAKDKL 51 (87)
Q Consensus 3 ~d~i~~~G~~i~p---~eIE~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~l 51 (87)
+.++.+|..-+.+ .+|++++..|+.|-+........+..++.+.+.+..
T Consensus 17 ~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t 68 (84)
T PF01985_consen 17 KPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKT 68 (84)
T ss_dssp --SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHh
Confidence 3456666666665 456677888887755554545555666666666543
No 166
>PF01948 PyrI: Aspartate carbamoyltransferase regulatory chain, allosteric domain; InterPro: IPR020545 Aspartate carbamoyltransferase (aspartate transcarbamylase, ATCase) 2.1.3.2 from EC is an allosteric enzyme that plays a central role in the regulation of the pyrimidine pathway in bacteria. The holoenzyme is a dodecamer composed of six catalytic chains, each with an active site, and six regulatory chains lacking catalytic activity []. The catalytic subunits exist as a dimer of catalytic trimers, (c3)2, while the regulatory subunits exist as a trimer of regulatory dimers, (r2)3, therefore the complete holoenzyme can be represented as (c3)2(r2)3. The association of the catalytic subunits c3 with the regulatory subunits r2 is responsible for the establishment of positive co-operativity between catalytic sites for the binding of aspartate and it dictates the pattern of allosteric response toward nucleotide effectors. ATCase from Escherichia coli is the most extensively studied allosteric enzyme []. The crystal structure of the T-state, the T-state with CTP bound, the R-state with N-phosphonacetyl-L-aspartate (PALA) bound, and the R-state with phosphonoacetamide plus malonate bound have been used in interpreting kinetic and mutational studies. A high-resolution structure of E. coli ATCase in the presence of PALA (a bisubstrate analog) allows a detailed description of the binding at the active site of the enzyme and allows a detailed model of the tetrahedral intermediate to be constructed. The entire regulatory chain has been traced showing that the N-terminal regions of the regulatory chains R1 and R6 are located in close proximity to each other and to the regulatory site. This portion of the molecule may be involved in the observed asymmetry between the regulatory binding sites as well as in the heterotropic response of the enzyme []. The C-terminal domain of the regulatory chains have a rubredoxin-like zinc-bound fold. ATCase from Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans) differs from the other investigated enterobacterial ATCases by its absence of homotropic co-operativity toward the substrate aspartate and its lack of response to ATP which is an allosteric effector (activator) of this family of enzymes. Nevertheless, the E. herbicola ATCase has the same quaternary structure, two trimers of catalytic chains with three dimers of regulatory chains, (c3)2(r2)3, as other enterobacterial ATCases and shows extensive primary structure conservation []. ; PDB: 2BE9_B 1PG5_B 1SKU_D 1Q95_L 8ATC_B 3AT1_D 1RAI_D 4E2F_D 1NBE_B 6AT1_B ....
Probab=27.31 E-value=57 Score=17.71 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=17.0
Q ss_pred ccceEEeCCeeecHHHHHHHHHhCCC
Q 046846 2 SADIMKVGGYKLSALEIESVLLEKKA 27 (87)
Q Consensus 2 ~~d~i~~~G~~i~p~eIE~~l~~~~~ 27 (87)
.||+||+-|..++..++...-.=.|.
T Consensus 52 ~KDIIKIe~~~l~~~e~~~laliaP~ 77 (96)
T PF01948_consen 52 KKDIIKIEGRFLSDEELDKLALIAPN 77 (96)
T ss_dssp EEEEEEEETC--SHHHHHHHCCTSTT
T ss_pred cCCEEEECCccCCHhHhheeEEECCC
Confidence 47999999998888887765333443
No 167
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=66 Score=16.41 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=13.3
Q ss_pred eeecHHHHHHHHHhCCC
Q 046846 11 YKLSALEIESVLLEKKA 27 (87)
Q Consensus 11 ~~i~p~eIE~~l~~~~~ 27 (87)
.++++++|+.++..+|.
T Consensus 50 d~~~ve~i~~vi~sCPS 66 (74)
T COG3592 50 DAVDVEEIVKVIDTCPS 66 (74)
T ss_pred CCCCHHHHHHHHHhCCc
Confidence 45678899999988873
No 168
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=25.89 E-value=89 Score=16.96 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=18.2
Q ss_pred EEeCCeeecHHHHHHHHHhCCCc
Q 046846 6 MKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.+-|.+|...+|+.++....++
T Consensus 51 itiEG~~id~d~i~~~Ie~~Gg~ 73 (95)
T PF02680_consen 51 ITIEGDDIDFDEIKEAIEELGGV 73 (95)
T ss_dssp EEEEESSE-HHHHHHHHHHTT-E
T ss_pred EEEEeCCCCHHHHHHHHHHcCCe
Confidence 44789999999999999998765
No 169
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=24.73 E-value=1.3e+02 Score=18.40 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.5
Q ss_pred eEEeCCeeecHHHHHHHHHhC
Q 046846 5 IMKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 5 ~i~~~G~~i~p~eIE~~l~~~ 25 (87)
+.++||..|...+++..+...
T Consensus 29 vA~Vng~~It~~dl~~~~~~~ 49 (232)
T TIGR02925 29 AAKVNGVEISVHQLNYALQRT 49 (232)
T ss_pred eEEECCEEeCHHHHHHHHHhc
Confidence 455899999999999988654
No 170
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=24.64 E-value=1.6e+02 Score=17.55 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhhCCCCCCCceEEE-ecccCCCCCCcccHHHHHHHHH
Q 046846 36 PVLSLQELCTWAKDKLAPYKLPTRLFL-WDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 36 ~~~~~~~l~~~~~~~l~~~~~p~~i~~-v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
...+..+....+...+........+.. ..-+-+..+|+|....|+..+.
T Consensus 70 ~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 70 ETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred CccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH
Confidence 445566666666555443222222211 2346677777777777777654
No 171
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=24.51 E-value=77 Score=17.54 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=13.8
Q ss_pred EeCCeeecHHHHHHHHHhC
Q 046846 7 KVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 7 ~~~G~~i~p~eIE~~l~~~ 25 (87)
.++| +|.+.||++.+...
T Consensus 56 l~RG-~v~~~di~~~i~~i 73 (126)
T PF03953_consen 56 LYRG-DVSPKDINEAIAKI 73 (126)
T ss_dssp EEEE-SSTHHHHHHHHHHH
T ss_pred cccc-ccccchhhhHHHhh
Confidence 4677 68899998888764
No 172
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=23.85 E-value=87 Score=18.75 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=16.4
Q ss_pred CccceEEeCCeeecHHHHHH
Q 046846 1 TSADIMKVGGYKLSALEIES 20 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~ 20 (87)
+.+++|...|..|.++.++-
T Consensus 194 ~~Ge~IV~kGe~VT~e~~~~ 213 (222)
T PF07697_consen 194 KKGEVIVRKGEIVTEEQYEK 213 (222)
T ss_pred cCCCEEecCCcEeCHHHHHH
Confidence 35788999999999987764
No 173
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=23.61 E-value=1.8e+02 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=17.7
Q ss_pred eEEeCCeeecHHHHHHHHHhCCCc
Q 046846 5 IMKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 5 ~i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
++-+-|..+.-.+|...+...|+.
T Consensus 57 ~~aSlGk~~~d~elDaM~~Ea~gP 80 (171)
T KOG0031|consen 57 MLASLGKIASDEELDAMMKEAPGP 80 (171)
T ss_pred HHHHcCCCCCHHHHHHHHHhCCCC
Confidence 344567778888899988888754
No 174
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=23.39 E-value=1.1e+02 Score=15.15 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=12.2
Q ss_pred ceEE-eCCeeec-HHHHHHHHHhC
Q 046846 4 DIMK-VGGYKLS-ALEIESVLLEK 25 (87)
Q Consensus 4 d~i~-~~G~~i~-p~eIE~~l~~~ 25 (87)
|.|. ++|..|. ..++...+..+
T Consensus 32 DiI~~Ing~~v~~~~d~~~~l~~~ 55 (79)
T cd00991 32 DVIYSINGTPITTLEDFMEALKPT 55 (79)
T ss_pred CEEEEECCEEcCCHHHHHHHHhcC
Confidence 4443 6777773 45565555543
No 175
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=23.27 E-value=1.3e+02 Score=15.77 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=19.1
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCCCc
Q 046846 33 KSKPVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
..+...+.+.|.+++.++.+....|.
T Consensus 25 ~~~~~at~E~l~~~L~~~yp~i~~Ps 50 (80)
T PF10264_consen 25 AAGQPATQETLREHLRKHYPGIAIPS 50 (80)
T ss_pred ccCCcchHHHHHHHHHHhCCCCCCCC
Confidence 45667788889999988877655553
No 176
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.48 E-value=1e+02 Score=14.33 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCcccc-----------cCCCCCCCHHHHHHHHHh
Q 046846 16 LEIESVLLEKKAKRDQ-----------EKSKPVLSLQELCTWAKD 49 (87)
Q Consensus 16 ~eIE~~l~~~~~v~~~-----------~~~~~~~~~~~l~~~~~~ 49 (87)
..|+.+|...|+|... .......+.+++.+.+..
T Consensus 14 ~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 14 KKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 5688999999987211 112223566777777765
No 177
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=21.76 E-value=86 Score=17.72 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=17.8
Q ss_pred ceEEe-CCeeecHHHHHHHHHhC
Q 046846 4 DIMKV-GGYKLSALEIESVLLEK 25 (87)
Q Consensus 4 d~i~~-~G~~i~p~eIE~~l~~~ 25 (87)
..|.+ ||..+.+.+|+.+-...
T Consensus 59 gkV~lGGGl~m~~~evd~IA~~r 81 (126)
T PF12757_consen 59 GKVNLGGGLFMDQEEVDAIARKR 81 (126)
T ss_pred CeeeCCCCcccCHHHHHHHHHHh
Confidence 45664 89999999999987765
No 178
>PRK00893 aspartate carbamoyltransferase regulatory subunit; Reviewed
Probab=21.12 E-value=86 Score=18.54 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=19.5
Q ss_pred ccceEEeCCeeecHHHHHHHHHhCCC
Q 046846 2 SADIMKVGGYKLSALEIESVLLEKKA 27 (87)
Q Consensus 2 ~~d~i~~~G~~i~p~eIE~~l~~~~~ 27 (87)
+||+||+-|.-++..|+...-.=.|.
T Consensus 54 kKDIIKIE~~~l~~~e~~~laliaP~ 79 (152)
T PRK00893 54 RKDIIKIENRFLSEEEVDQLALIAPN 79 (152)
T ss_pred cCCEEEECCcccCHhHhhheEEECCC
Confidence 58999999999888887765433453
No 179
>PF12512 DUF3717: Protein of unknown function (DUF3717) ; InterPro: IPR022191 This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 117 amino acids in length. There is a conserved AIN sequence motif. There are two completely conserved residues (L and Y) that may be functionally important.
Probab=20.97 E-value=87 Score=16.02 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=10.9
Q ss_pred eecHHHHHHHHHhC
Q 046846 12 KLSALEIESVLLEK 25 (87)
Q Consensus 12 ~i~p~eIE~~l~~~ 25 (87)
.|+..+||+++.-.
T Consensus 3 ~i~I~dIE~AIN~W 16 (71)
T PF12512_consen 3 DISITDIEAAINYW 16 (71)
T ss_pred ccCHHHHHHHHHHH
Confidence 36788999998754
No 180
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=20.74 E-value=1.8e+02 Score=16.56 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.3
Q ss_pred EEeCCeeecHHHHHHHHHhCC
Q 046846 6 MKVGGYKLSALEIESVLLEKK 26 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~~ 26 (87)
+-+||..++++|.++.+.+.-
T Consensus 77 lalGd~~Ls~eEf~~L~~~~~ 97 (141)
T PF12419_consen 77 LALGDEELSEEEFEQLVEQKR 97 (141)
T ss_pred EEECCEECCHHHHHHHHHcCC
Confidence 457999999999999888753
No 181
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.59 E-value=1.6e+02 Score=15.94 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEeCCeeecHHHHHHHHHhCCCc
Q 046846 6 MKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.+-|.++.-.+|+..|....++
T Consensus 53 itIeG~~ldydei~~~iE~~Gg~ 75 (97)
T COG1888 53 ITIEGTNLDYDEIEEVIEELGGA 75 (97)
T ss_pred EEEEcCCCCHHHHHHHHHHcCCe
Confidence 45788899999999999887654
No 182
>CHL00103 rpl35 ribosomal protein L35
Probab=20.47 E-value=28 Score=17.40 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=9.3
Q ss_pred cCCCCCCcccHHH
Q 046846 66 LPRNAMGKVNKKE 78 (87)
Q Consensus 66 ~p~t~~gKi~r~~ 78 (87)
|-.|.+||+.|..
T Consensus 14 FKvT~sGKvkr~~ 26 (65)
T CHL00103 14 YKKTGNGKFLRRK 26 (65)
T ss_pred eEecCCCCEEecc
Confidence 5568889887653
No 183
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=20.36 E-value=2e+02 Score=18.40 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=14.6
Q ss_pred ccceEE-eCCeee-cHHHHHHHHHhC
Q 046846 2 SADIMK-VGGYKL-SALEIESVLLEK 25 (87)
Q Consensus 2 ~~d~i~-~~G~~i-~p~eIE~~l~~~ 25 (87)
..|+|. ++|..| ++.++-.++..+
T Consensus 211 ~GDvIv~ING~~i~~~~~~~~~l~~~ 236 (259)
T TIGR01713 211 DGDIAVALNGLDLRDPEQAFQALQML 236 (259)
T ss_pred CCCEEEEECCEEcCCHHHHHHHHHhc
Confidence 455555 677777 466666666554
No 184
>TIGR00240 ATCase_reg aspartate carbamoyltransferase, regulatory subunit. The presence of this regulatory subunit allows feedback inhibition by CTP on aspartate carbamoyltransferase, the first step in the synthesis of CTP from aspartate. In many species, this regulatory subunit is not present. In Thermotoga maritima, the catalytic and regulatory subunits are encoded by a fused gene and the regulatory region has enough sequence differences to score below the trusted cutoff.
Probab=20.16 E-value=93 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=18.7
Q ss_pred ccceEEeCCeeecHHHHHHHHHhCC
Q 046846 2 SADIMKVGGYKLSALEIESVLLEKK 26 (87)
Q Consensus 2 ~~d~i~~~G~~i~p~eIE~~l~~~~ 26 (87)
+||+||+-|..++-.|+...-.=.|
T Consensus 52 kKDIIKIE~~~l~~~e~~~laliaP 76 (150)
T TIGR00240 52 KKDIVKIENTFLKEEEVDQIALIAP 76 (150)
T ss_pred cCCEEEECCcccCHhHhhheEEECC
Confidence 5899999999988877776433345
Done!