Query 046846
Match_columns 87
No_of_seqs 153 out of 1596
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 99.9 2.1E-21 7.1E-26 127.9 8.5 85 1-85 397-500 (503)
2 3r44_A Fatty acyl COA syntheta 99.9 2.8E-21 9.5E-26 127.6 8.9 85 1-85 411-513 (517)
3 4gs5_A Acyl-COA synthetase (AM 99.8 1.3E-21 4.4E-26 124.8 5.2 85 1-85 248-354 (358)
4 3ni2_A 4-coumarate:COA ligase; 99.8 3.9E-21 1.3E-25 127.3 7.7 85 1-85 432-535 (536)
5 1t5h_X 4-chlorobenzoyl COA lig 99.8 7.6E-21 2.6E-25 125.1 8.7 84 1-84 400-503 (504)
6 1mdb_A 2,3-dihydroxybenzoate-A 99.8 1.7E-20 5.9E-25 124.3 8.2 85 1-85 428-531 (539)
7 1pg4_A Acetyl-COA synthetase; 99.8 5.2E-20 1.8E-24 124.5 9.4 86 1-86 515-622 (652)
8 3e7w_A D-alanine--poly(phospho 99.8 7.9E-20 2.7E-24 120.4 9.4 85 1-85 396-503 (511)
9 3fce_A D-alanine--poly(phospho 99.8 7.8E-20 2.7E-24 120.4 9.1 86 1-86 397-505 (512)
10 3ipl_A 2-succinylbenzoate--COA 99.8 1.5E-20 5.3E-25 123.4 5.8 85 1-85 396-497 (501)
11 3etc_A AMP-binding protein; ad 99.8 3.8E-20 1.3E-24 123.8 6.9 85 1-85 473-579 (580)
12 3g7s_A Long-chain-fatty-acid-- 99.8 7.3E-21 2.5E-25 126.3 3.3 85 1-85 437-542 (549)
13 2d1s_A Luciferase, luciferin 4 99.8 5.8E-20 2E-24 122.1 7.6 85 1-85 439-543 (548)
14 3nyq_A Malonyl-COA ligase; A/B 99.8 6.6E-20 2.2E-24 120.9 7.2 81 1-81 403-504 (505)
15 3l8c_A D-alanine--poly(phospho 99.8 3.7E-20 1.3E-24 122.0 5.2 85 1-85 401-512 (521)
16 3rg2_A Enterobactin synthase c 99.8 2.7E-19 9.1E-24 120.2 8.5 85 1-85 432-534 (617)
17 3lax_A Phenylacetate-coenzyme 99.8 4.9E-20 1.7E-24 100.5 3.5 75 1-76 2-101 (109)
18 3c5e_A Acyl-coenzyme A synthet 99.8 2.4E-19 8.3E-24 119.7 6.8 84 1-84 454-561 (570)
19 1amu_A GRSA, gramicidin synthe 99.8 1.5E-19 5.2E-24 120.5 5.7 82 1-82 428-526 (563)
20 1ry2_A Acetyl-coenzyme A synth 99.8 2.2E-19 7.4E-24 121.8 5.6 85 1-85 524-637 (663)
21 3ivr_A Putative long-chain-fat 99.8 1.7E-20 5.9E-25 123.4 -0.3 85 1-85 396-501 (509)
22 4gr5_A Non-ribosomal peptide s 99.8 2.6E-20 8.8E-25 124.2 0.2 82 1-82 467-568 (570)
23 3o83_A Peptide arylation enzym 99.8 2.4E-20 8.2E-25 123.8 -0.4 85 1-85 437-540 (544)
24 1v25_A Long-chain-fatty-acid-C 99.8 4.8E-20 1.6E-24 122.2 0.8 85 1-85 433-536 (541)
25 2v7b_A Benzoate-coenzyme A lig 99.8 9.4E-19 3.2E-23 115.6 5.7 81 1-81 427-528 (529)
26 4dg8_A PA1221; ANL superfamily 99.7 6.6E-19 2.3E-23 118.7 3.5 84 1-84 417-512 (620)
27 3tsy_A Fusion protein 4-coumar 99.7 1.3E-19 4.6E-24 126.6 -0.1 85 1-85 479-582 (979)
28 3rix_A Luciferase, luciferin 4 99.7 1.7E-19 5.8E-24 119.7 0.0 85 1-85 437-541 (550)
29 3gqw_A Fatty acid AMP ligase; 99.7 3.1E-18 1.1E-22 113.6 5.9 85 1-85 459-563 (576)
30 2vsq_A Surfactin synthetase su 99.7 2.7E-18 9.3E-23 122.8 5.9 81 1-81 859-956 (1304)
31 3gxs_A Phenylacetate-coenzyme 99.7 3.1E-18 1E-22 93.5 4.7 76 1-77 2-102 (109)
32 3ite_A SIDN siderophore synthe 99.7 3.3E-19 1.1E-23 118.5 -0.3 85 1-85 425-543 (562)
33 3kxw_A Saframycin MX1 syntheta 99.6 2.8E-17 9.6E-22 109.5 0.1 86 1-86 456-568 (590)
34 3qov_A Phenylacetate-coenzyme 99.5 4.3E-15 1.5E-19 96.2 5.0 75 1-77 329-429 (436)
35 2y4o_A Phenylacetate-coenzyme 99.5 2.5E-15 8.6E-20 97.5 3.8 78 1-78 333-437 (443)
36 2y27_A Phenylacetate-coenzyme 99.5 1.1E-14 3.9E-19 94.3 4.2 77 1-78 331-432 (437)
37 4b2g_A GH3-1 auxin conjugating 92.6 0.046 1.6E-06 37.6 1.5 24 1-24 435-458 (609)
38 4eql_A 4-substituted benzoates 92.1 0.064 2.2E-06 36.6 1.8 25 1-25 423-447 (581)
39 4epl_A Jasmonic acid-amido syn 90.4 0.11 3.6E-06 35.6 1.5 24 1-24 430-453 (581)
40 2kke_A Uncharacterized protein 63.2 7.1 0.00024 17.3 2.2 16 11-26 18-33 (53)
41 2vsp_A PDZ domain-containing p 50.3 22 0.00075 17.4 3.4 23 3-25 48-74 (91)
42 1kwa_A Hcask/LIN-2 protein; PD 46.7 26 0.00088 17.2 3.2 25 3-27 47-75 (88)
43 1y7n_A Amyloid beta A4 precurs 46.5 27 0.00092 17.3 3.6 23 3-25 52-78 (90)
44 2eaq_A LIM domain only protein 45.5 26 0.0009 17.0 3.5 23 2-24 48-74 (90)
45 2pa1_A PDZ and LIM domain prot 44.2 28 0.00094 16.8 3.1 24 3-26 47-74 (87)
46 2fcj_A Small toprim domain pro 43.5 38 0.0013 18.2 4.2 48 4-54 28-77 (119)
47 2b3g_B Cellular tumor antigen 43.4 17 0.00057 14.1 1.5 16 11-26 11-26 (28)
48 2ejy_A 55 kDa erythrocyte memb 42.8 22 0.00076 18.1 2.5 23 3-25 58-84 (97)
49 1jo0_A Hypothetical protein HI 38.2 18 0.00061 18.8 1.6 50 4-53 20-72 (98)
50 2kl1_A YLBL protein; structure 35.0 44 0.0015 16.5 3.3 23 3-25 25-49 (94)
51 2ovk_B RLC, myosin regulatory 34.8 39 0.0013 17.7 2.8 18 66-83 94-111 (153)
52 2ego_A General receptor for ph 34.7 44 0.0015 16.4 3.2 22 4-25 59-84 (96)
53 2z17_A Pleckstrin homology SEC 34.6 46 0.0016 16.7 2.9 21 6-26 73-96 (104)
54 2l69_A Rossmann 2X3 fold prote 34.5 6.7 0.00023 20.6 -0.4 23 3-25 19-45 (134)
55 1z9i_A Epidermal growth factor 34.4 21 0.00071 16.5 1.3 16 65-80 21-37 (53)
56 1ueq_A Membrane associated gua 34.3 52 0.0018 17.1 3.7 24 3-26 66-93 (123)
57 1vb7_A PDZ and LIM domain 2; P 34.2 45 0.0015 16.3 3.2 23 3-25 51-77 (94)
58 3gge_A PDZ domain-containing p 34.0 51 0.0017 16.9 3.3 22 5-26 53-77 (95)
59 2hzd_A Transcriptional enhance 33.8 14 0.00048 18.7 0.8 17 9-25 4-20 (82)
60 2i04_A Membrane-associated gua 33.1 44 0.0015 15.9 3.7 23 3-25 47-73 (85)
61 2jxo_A Ezrin-radixin-moesin-bi 32.7 48 0.0017 16.3 3.7 24 3-26 54-81 (98)
62 2yt7_A Amyloid beta A4 precurs 32.2 49 0.0017 16.5 2.8 23 3-25 59-85 (101)
63 4evu_A Putative periplasmic pr 31.2 34 0.0012 16.8 1.9 22 4-25 21-42 (72)
64 1wif_A RSGI RUH-020, riken cDN 31.0 49 0.0017 17.7 2.7 22 4-25 73-97 (126)
65 3bpd_A Uncharacterized protein 30.9 62 0.0021 16.9 3.0 23 6-28 53-75 (100)
66 1va8_A Maguk P55 subfamily mem 30.5 59 0.002 16.6 3.7 24 3-26 70-97 (113)
67 2kjp_A Uncharacterized protein 30.4 55 0.0019 16.2 2.8 24 2-25 20-45 (91)
68 3kzd_A TIAM-1, T-lymphoma inva 30.3 59 0.002 16.5 3.1 23 3-25 56-82 (94)
69 1vae_A Rhophilin 2, rhophilin, 29.9 62 0.0021 16.7 3.7 18 8-25 63-83 (111)
70 3e17_A Tight junction protein 29.6 55 0.0019 15.9 3.7 21 6-26 47-70 (88)
71 1pva_A Parvalbumin; calcium bi 28.7 12 0.0004 18.7 -0.0 16 10-25 4-19 (110)
72 2pfu_A Biopolymer transport EX 28.5 60 0.0021 16.0 3.1 47 3-49 29-82 (99)
73 2vz5_A TAX1-binding protein 3; 28.5 69 0.0024 17.2 3.1 24 3-26 85-112 (139)
74 1ujv_A Membrane associated gua 28.4 61 0.0021 16.0 3.1 24 3-26 51-78 (96)
75 2i6v_A General secretion pathw 28.2 58 0.002 15.7 3.2 23 3-25 40-64 (87)
76 2e7k_A Maguk P55 subfamily mem 27.9 60 0.0021 15.8 3.1 23 3-25 51-76 (91)
77 3o46_A Maguk P55 subfamily mem 27.7 60 0.0021 15.8 3.2 22 5-26 53-77 (93)
78 1rq8_A Conserved hypothetical 27.4 51 0.0017 17.3 2.3 49 4-52 19-70 (104)
79 3qik_A Phosphatidylinositol 3, 26.8 74 0.0025 16.5 3.2 21 4-24 62-85 (101)
80 2kyc_A Parvalbumin-3, parvalbu 25.8 46 0.0016 16.3 2.0 16 10-25 3-18 (108)
81 3dtp_E RLC, myosin regulatory 25.5 72 0.0025 17.7 3.0 72 12-83 73-152 (196)
82 2kpk_A Membrane-associated gua 25.1 83 0.0028 16.5 3.7 24 3-26 65-92 (129)
83 1ugi_A UGI, uracil-DNA glycosy 24.9 56 0.0019 15.7 2.0 20 8-27 19-38 (84)
84 2raq_A Conserved protein MTH88 24.5 76 0.0026 16.5 2.6 23 6-28 53-75 (97)
85 2rcz_A Tight junction protein 24.1 65 0.0022 14.9 3.7 18 7-24 48-68 (81)
86 2yuy_A RHO GTPase activating p 24.0 79 0.0027 16.5 2.8 21 5-25 85-108 (126)
87 3evi_A Phosducin-like protein 23.9 55 0.0019 17.1 2.1 18 9-26 96-113 (118)
88 2v90_A PDZ domain-containing p 23.8 74 0.0025 15.5 2.8 23 3-25 51-77 (96)
89 1wh1_A KIAA1095 protein; PDZ d 23.4 88 0.003 16.2 3.1 23 3-25 70-94 (124)
90 3tl4_X Glutaminyl-tRNA synthet 23.2 44 0.0015 19.5 1.7 16 10-25 114-129 (187)
91 3j04_B Myosin regulatory light 21.8 37 0.0013 17.4 1.2 73 12-84 23-103 (143)
92 1gtk_A Porphobilinogen deamina 21.7 41 0.0014 21.4 1.4 21 6-26 54-74 (313)
93 2zjr_3 50S ribosomal protein L 21.1 18 0.00061 17.5 -0.2 13 66-78 14-26 (66)
94 3ecr_A Porphobilinogen deamina 21.0 47 0.0016 21.6 1.7 21 6-26 72-92 (364)
95 1v5l_A PDZ and LIM domain 3; a 20.9 92 0.0031 15.5 2.6 23 3-25 50-76 (103)
96 2yww_A Aspartate carbamoyltran 20.6 54 0.0018 18.5 1.7 26 2-27 54-79 (149)
97 2iwq_A Multiple PDZ domain pro 20.2 1.1E+02 0.0037 16.0 3.2 23 3-25 81-107 (123)
98 1whd_A RGS3, regulator of G-pr 20.1 95 0.0032 15.3 3.8 23 3-25 57-83 (100)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.85 E-value=2.1e-21 Score=127.87 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=74.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+.+++.++++++|+.|++|..+.
T Consensus 397 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~ 476 (503)
T 4fuq_A 397 RGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVI 476 (503)
T ss_dssp SSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEE
T ss_pred cCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEE
Confidence 89999999999999999999999999651 11123445678899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.|.+
T Consensus 477 ~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 477 FVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp EESCCCBCTTSCBCHHHHHHHTTT
T ss_pred EECCCCCCcccceeHHHHHHHHHH
Confidence 999999999999999999998754
No 2
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.85 E-value=2.8e-21 Score=127.61 Aligned_cols=85 Identities=29% Similarity=0.463 Sum_probs=75.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 62 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+.+++.++++++|+.|++|..+.+
T Consensus 411 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~ 490 (517)
T 3r44_A 411 RLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIF 490 (517)
T ss_dssp CGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEE
T ss_pred CCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 89999999999999999999999999661 112234556788999999999999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++||+|++||++|+.|++.|.+
T Consensus 491 v~~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 491 AEAIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp CSCCCBCTTCCBCHHHHHHHHGG
T ss_pred ECCCCCCCCcCccHHHHHHHHHh
Confidence 99999999999999999999865
No 3
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.84 E-value=1.3e-21 Score=124.78 Aligned_cols=85 Identities=14% Similarity=0.306 Sum_probs=69.3
Q ss_pred CccceEEeCCeeecHHHHHHHHH---hCCCcc----c---------------ccCCCCCCCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLL---EKKAKR----D---------------QEKSKPVLSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~---~~~~v~----~---------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|. .||.|. + ........+.+++.++|+++|+.|++|.
T Consensus 248 R~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~ 327 (358)
T 4gs5_A 248 RADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPK 327 (358)
T ss_dssp EGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCS
T ss_pred cccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCce
Confidence 78999999999999999998774 456441 1 0112223445789999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.|.++++||+|++||++|++|++.+.+
T Consensus 328 ~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 328 HIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp CEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred EEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 999999999999999999999988754
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.84 E-value=3.9e-21 Score=127.26 Aligned_cols=85 Identities=22% Similarity=0.438 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+.+++.++++++|+.|++|..+.
T Consensus 432 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 511 (536)
T 3ni2_A 432 RLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVF 511 (536)
T ss_dssp ECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEE
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEE
Confidence 78999999999999999999999999651 11123445678899999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.+.+
T Consensus 512 ~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 512 FIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ECSCCCBCTTSCBCHHHHHTC---
T ss_pred EEecCCCCCCCCeeHHHHHHHhcc
Confidence 999999999999999999987753
No 5
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.84 E-value=7.6e-21 Score=125.07 Aligned_cols=84 Identities=32% Similarity=0.484 Sum_probs=73.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHh-hCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKD-KLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i 60 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+.+++.+++++ +|+.|++|..+
T Consensus 400 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i 479 (504)
T 1t5h_X 400 RVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRY 479 (504)
T ss_dssp EGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEE
T ss_pred cccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEE
Confidence 78999999999999999999999999661 11122334678899999999 89999999999
Q ss_pred EEecccCCCCCCcccHHHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
.++++||+|++||++|+.|++.+.
T Consensus 480 ~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 480 FILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEhhhCCCCCCCCEeHHHHHHHhc
Confidence 999999999999999999998763
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.83 E-value=1.7e-20 Score=124.34 Aligned_cols=85 Identities=31% Similarity=0.481 Sum_probs=73.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc------------------cccCCCCCCCHHHHHHHHHhh-CCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR------------------DQEKSKPVLSLQELCTWAKDK-LAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~------------------~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~ 61 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+.+++.++++++ |+.|++|..+.
T Consensus 428 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~i~ 507 (539)
T 1mdb_A 428 RAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVE 507 (539)
T ss_dssp EGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEEE
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCEEE
Confidence 78999999999999999999999999651 001123456788999999998 99999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.+.+
T Consensus 508 ~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 508 FVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp ECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred EeccCCCCCCcCEeHHHHHHHHHH
Confidence 999999999999999999998764
No 7
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.82 E-value=5.2e-20 Score=124.48 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=72.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCC---HHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLS---LQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+ .++|+++++++|+.|++|.
T Consensus 515 R~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 594 (652)
T 1pg4_A 515 RVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPD 594 (652)
T ss_dssp ESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCS
T ss_pred cCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCe
Confidence 89999999999999999999999999651 1111222222 5689999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
.|.++++||+|+|||++|+.|++.+.+.
T Consensus 595 ~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 595 VLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp EEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 9999999999999999999999988653
No 8
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.82 E-value=7.9e-20 Score=120.39 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=71.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----c---------------ccCCCCCCC----HHHHHHHHHhhCCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----D---------------QEKSKPVLS----LQELCTWAKDKLAPYKLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~---------------~~~~~~~~~----~~~l~~~~~~~l~~~~~p 57 (87)
|+||+||++|+||+|.|||++|.+||.|. + ....+.... .+++.++++++|+.|++|
T Consensus 396 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P 475 (511)
T 3e7w_A 396 RLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIP 475 (511)
T ss_dssp ESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSC
T ss_pred cccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCC
Confidence 78999999999999999999999999661 0 001111112 367999999999999999
Q ss_pred ceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 58 TRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 58 ~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
..+.++++||+|++||++|+.|++.+..
T Consensus 476 ~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 476 RKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp SEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred eeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 9999999999999999999999998864
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.81 E-value=7.8e-20 Score=120.38 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=71.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCC----HHHHHHHHHhhCCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLS----LQELCTWAKDKLAPYKLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~----~~~l~~~~~~~l~~~~~p 57 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+.... .+++.++++++|+.|++|
T Consensus 397 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P 476 (512)
T 3fce_A 397 RLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIP 476 (512)
T ss_dssp EGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSC
T ss_pred ccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCC
Confidence 789999999999999999999999996610 011111112 357999999999999999
Q ss_pred ceEEEecccCCCCCCcccHHHHHHHHHhc
Q 046846 58 TRLFLWDSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 58 ~~i~~v~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
..+.++++||+|++||++|+.|++.+...
T Consensus 477 ~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 477 RKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp SEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred eEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 99999999999999999999999998754
No 10
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.81 E-value=1.5e-20 Score=123.35 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=57.9
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-----------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-----------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-----------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+...+.+++.++++++|+.|++|..+.++
T Consensus 396 R~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v 475 (501)
T 3ipl_A 396 RRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKHLAKYKVPKHFEKV 475 (501)
T ss_dssp ECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhhCccccCCCEEEEe
Confidence 789999999999999999999999996610 011234567889999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHHHHHh
Q 046846 64 DSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++||+|++||++|+.|++....
T Consensus 476 ~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 476 DTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp SSCC------------------
T ss_pred cccCCCCCCCEeHHHHhhcccc
Confidence 9999999999999999987653
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.81 E-value=3.8e-20 Score=123.79 Aligned_cols=85 Identities=28% Similarity=0.425 Sum_probs=53.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCC---CCHHHHHHHHHhhCCCCCCCc
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPV---LSLQELCTWAKDKLAPYKLPT 58 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~---~~~~~l~~~~~~~l~~~~~p~ 58 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+.. ...++|.+++++.|++|++|.
T Consensus 473 R~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 552 (580)
T 3etc_A 473 RADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPR 552 (580)
T ss_dssp ESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCS
T ss_pred cCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCe
Confidence 78999999999999999999999999661 11111211 224689999999999999999
Q ss_pred eEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 59 RLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 59 ~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.+.++++||+|++||++|+.|++.+.+
T Consensus 553 ~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 553 IIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEEECC--------------------
T ss_pred EEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 999999999999999999999998764
No 12
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.81 E-value=7.3e-21 Score=126.27 Aligned_cols=85 Identities=22% Similarity=0.467 Sum_probs=40.5
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCC--CCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSK--PVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+ ...+.+++.++++++|+.|++|..
T Consensus 437 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 516 (549)
T 3g7s_A 437 RVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVRE 516 (549)
T ss_dssp EC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CC
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceE
Confidence 78999999999999999999999999651 011112 356788999999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+|++||++|+.|++.+..
T Consensus 517 i~~v~~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 517 VEFVEELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp CCEEEECC------------------
T ss_pred EEEeccCCCCCCcCEeHHHHHHHhhc
Confidence 99999999999999999999998754
No 13
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.81 E-value=5.8e-20 Score=122.07 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=74.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCCHHHHHHHHHhhCCCCCCCc-eE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLSLQELCTWAKDKLAPYKLPT-RL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i 60 (87)
|+||+||++|+||+|.|||++|.+||.|. +....+...+.+++.++++++|+.|+.|. .+
T Consensus 439 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i 518 (548)
T 2d1s_A 439 RLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGV 518 (548)
T ss_dssp EGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCE
T ss_pred cccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccE
Confidence 78999999999999999999999999651 11123335678899999999999999999 99
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.++++||+|++||++|+.|++.+..
T Consensus 519 ~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 519 RFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEccCCCCCCcchhHHHHHHHHHhh
Confidence 9999999999999999999998864
No 14
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.80 E-value=6.6e-20 Score=120.87 Aligned_cols=81 Identities=37% Similarity=0.537 Sum_probs=57.5
Q ss_pred Cc-cceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccC-CCCCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TS-ADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEK-SKPVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~-~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~-~~~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+ ||+||++|+||+|.|||++|.+||.|. +... .....+.+++.++++++|+.|++|..
T Consensus 403 R~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 482 (505)
T 3nyq_A 403 RKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRV 482 (505)
T ss_dssp ESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSE
T ss_pred CccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccE
Confidence 65 699999999999999999999999651 1111 23456778999999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHH
Q 046846 60 LFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
+.++++||+|++||++|+.|++
T Consensus 483 i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 483 VRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEECSCCCC-------------
T ss_pred EEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999986
No 15
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.80 E-value=3.7e-20 Score=122.00 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=65.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----ccc----------------CCCCCC-------CHHHHHHHHHhhCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQE----------------KSKPVL-------SLQELCTWAKDKLAP 53 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~~----------------~~~~~~-------~~~~l~~~~~~~l~~ 53 (87)
|+||+||++|+||+|.|||++|.+||.|. +.. ..+... ..+++.++|+++|+.
T Consensus 401 R~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 480 (521)
T 3l8c_A 401 RLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMS 480 (521)
T ss_dssp EGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCG
T ss_pred cccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCcc
Confidence 78999999999999999999999999661 100 011000 146799999999999
Q ss_pred CCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 54 YKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 54 ~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
|++|..+.++++||+|++||++|+.|++.+.+
T Consensus 481 ~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~ 512 (521)
T 3l8c_A 481 YMMPSKFLYRDSLPLTPNGKIDIKTLINEVNN 512 (521)
T ss_dssp GGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-
T ss_pred ccCCeEEEEecccCCCCCcCccHHHHhhhhhc
Confidence 99999999999999999999999999998754
No 16
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.79 E-value=2.7e-19 Score=120.24 Aligned_cols=85 Identities=36% Similarity=0.475 Sum_probs=72.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-----------------ccCCCCCCCHHHHHHHHHh-hCCCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-----------------QEKSKPVLSLQELCTWAKD-KLAPYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-----------------~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~ 62 (87)
|+||+||++|+||+|.|||++|.+||.|.. ........+..++.+++++ .|+.|++|..+.+
T Consensus 432 R~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~~~~~ 511 (617)
T 3rg2_A 432 REKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVEC 511 (617)
T ss_dssp ECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCSEEEE
T ss_pred ecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCcEEEE
Confidence 789999999999999999999999997610 0011235677899999998 6999999999999
Q ss_pred ecccCCCCCCcccHHHHHHHHHh
Q 046846 63 WDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+++||+|++||++|+.|++.+..
T Consensus 512 v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 512 VDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp CSCCCBCTTSSBCHHHHHHHHHH
T ss_pred ecccCCCCCCCCcHHHHHHHHhc
Confidence 99999999999999999987753
No 17
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.79 E-value=4.9e-20 Score=100.53 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=49.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCC---HHHHHHHHHhhCCCC-CCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLS---LQELCTWAKDKLAPY-KLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~---~~~l~~~~~~~l~~~-~~p 57 (87)
|.||||+++|.||||.|||++|.+||++. +....+...+ .+++...+++.+..+ ..|
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~ 81 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVT 81 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCc
Confidence 78999999999999999999999999661 1111222222 244555555555432 356
Q ss_pred ceEEEec--ccCCCCCCcccH
Q 046846 58 TRLFLWD--SLPRNAMGKVNK 76 (87)
Q Consensus 58 ~~i~~v~--~~p~t~~gKi~r 76 (87)
..+.+++ +||+| |||++|
T Consensus 82 ~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 82 PRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CEEEEECTTCSCCC----CCC
T ss_pred cceEEEcCCeecCC-CCCcch
Confidence 6788885 89998 799987
No 18
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.78 E-value=2.4e-19 Score=119.69 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=70.2
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCC-----CCCHHHHHHHHHhhCCCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKP-----VLSLQELCTWAKDKLAPYKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~-----~~~~~~l~~~~~~~l~~~~~ 56 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+. ....+++.++|+++|+.|++
T Consensus 454 R~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~ 533 (570)
T 3c5e_A 454 RADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKY 533 (570)
T ss_dssp EGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGS
T ss_pred cCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccC
Confidence 789999999999999999999999996610 001111 11256799999999999999
Q ss_pred CceEEEecccCCCCCCcccHHHHHHHHH
Q 046846 57 PTRLFLWDSLPRNAMGKVNKKELKNQLA 84 (87)
Q Consensus 57 p~~i~~v~~~p~t~~gKi~r~~l~~~~~ 84 (87)
|..+.++++||+|++||++|+.|++.+.
T Consensus 534 P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 534 PRKIEFVLNLPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp CSEEEEESCCCBCTTCCBCHHHHHHHHT
T ss_pred CcEEEEeccCCCCCCcCCcHHHHHHHHH
Confidence 9999999999999999999999998874
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.78 E-value=1.5e-19 Score=120.51 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=70.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc---c--------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD---Q--------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~---~--------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|+||+||++|+||+|.|||++|.+||.|.. . .......+.+++.++++++|+.|++|..+.++
T Consensus 428 R~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~i~~v 507 (563)
T 1amu_A 428 RIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQL 507 (563)
T ss_dssp EGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred cccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcEEEEe
Confidence 789999999999999999999999996610 0 01123457789999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHHH
Q 046846 64 DSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~~ 82 (87)
++||+|++||++|+.|++.
T Consensus 508 ~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 508 DKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp SSCCBCTTSSBCGGGSCCC
T ss_pred cccCCCCCcChhHHhcCCc
Confidence 9999999999999988653
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.78 E-value=2.2e-19 Score=121.76 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=69.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----c---------------ccCCCCC----------CCHHHHHHHHHhhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----D---------------QEKSKPV----------LSLQELCTWAKDKL 51 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~---------------~~~~~~~----------~~~~~l~~~~~~~l 51 (87)
|+||+||++|+||+|.|||++|.+||.|. + ....+.. ...++|.++++++|
T Consensus 524 R~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L 603 (663)
T 1ry2_A 524 RVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDI 603 (663)
T ss_dssp CTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHT
T ss_pred ecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999651 0 0011111 11467999999999
Q ss_pred CCCCCCceEEEecccCCCCCCcccHHHHHHHHHh
Q 046846 52 APYKLPTRLFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 52 ~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++|++|..|.++++||+|+|||++|+.|++.+.+
T Consensus 604 ~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 604 GPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp CTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 9999999999999999999999999999987643
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.77 E-value=1.7e-20 Score=123.42 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=1.2
Q ss_pred Cc--cceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCce
Q 046846 1 TS--ADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~--~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+ ||+||++|++|+|.|||++|.+||.|.. ....+...+.+++.++++++|+.|++|..
T Consensus 396 R~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 475 (509)
T 3ivr_A 396 RAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKH 475 (509)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcE
Confidence 56 8999999999999999999999996510 11122345567899999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHHHHHh
Q 046846 60 LFLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
+.++++||+|++||++|+.|++.+..
T Consensus 476 i~~v~~lP~t~~GKidr~~Lr~~~~~ 501 (509)
T 3ivr_A 476 VVFVEALPKDAKGAIDRAAVKTAHGQ 501 (509)
T ss_dssp --------------------------
T ss_pred EEEecCCCCCCCCCccHHHHHHHHhh
Confidence 99999999999999999999998764
No 22
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.77 E-value=2.6e-20 Score=124.17 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=0.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------cc-CCCCCCCHHHHHHHHHhhCCCCCCCceE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QE-KSKPVLSLQELCTWAKDKLAPYKLPTRL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~-~~~~~~~~~~l~~~~~~~l~~~~~p~~i 60 (87)
|+||+||++|+||+|.|||++|.+||.|.. .. ..+...+.+++.++|+++|+.|++|..+
T Consensus 467 R~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i 546 (570)
T 4gr5_A 467 RADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVEC 546 (570)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred ccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEE
Confidence 899999999999999999999999996510 00 1122345678999999999999999999
Q ss_pred EEecccCCCCCCcccHHHHHHH
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQ 82 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~ 82 (87)
.++++||+|++||++|+.|++.
T Consensus 547 ~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 547 VPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------
T ss_pred EEcccCCCCCCcCcchHhhhcc
Confidence 9999999999999999999864
No 23
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.77 E-value=2.4e-20 Score=123.76 Aligned_cols=85 Identities=33% Similarity=0.459 Sum_probs=2.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc------------------ccCCCCCCCHHHHHHHHHh-hCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD------------------QEKSKPVLSLQELCTWAKD-KLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~------------------~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~ 61 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+...+.+.+.+++.+ .|+.|++|..+.
T Consensus 437 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~ 516 (544)
T 3o83_A 437 RIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIK 516 (544)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred ecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcEEE
Confidence 789999999999999999999999996511 0011123445678888888 799999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.+..
T Consensus 517 ~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 517 LIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ------------------------
T ss_pred EeccCCCCCCCCCcHHHHHHHHhh
Confidence 999999999999999999998764
No 24
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.76 E-value=4.8e-20 Score=122.25 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=40.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----c--------------ccCCCCCCCHHHHHHHHHh-hCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----D--------------QEKSKPVLSLQELCTWAKD-KLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~--------------~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~ 61 (87)
|+||+||++|+||+|.|||++|.+||.|. + ....+...+.+++.+++++ +|+.|++|..+.
T Consensus 433 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~ 512 (541)
T 1v25_A 433 RLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYV 512 (541)
T ss_dssp ESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCSBC-
T ss_pred cccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcEEE
Confidence 78999999999999999999999999651 0 0011223455678999999 899999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.+.+
T Consensus 513 ~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 513 FAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp -------------CCTTHHHHSTT
T ss_pred EeCCCCCCCccCeeHHHHHHHHHH
Confidence 999999999999999999988754
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.75 E-value=9.4e-19 Score=115.60 Aligned_cols=81 Identities=35% Similarity=0.514 Sum_probs=63.6
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc----cc--------------cCCCCC-C--CHHHHHHHHHhhCCCCCCCce
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR----DQ--------------EKSKPV-L--SLQELCTWAKDKLAPYKLPTR 59 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~----~~--------------~~~~~~-~--~~~~l~~~~~~~l~~~~~p~~ 59 (87)
|+||+||++|+||+|.|||++|.+||.|. +. ...+.. . ..+++.++++++|+.|++|..
T Consensus 427 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 506 (529)
T 2v7b_A 427 RSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRD 506 (529)
T ss_dssp EGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSE
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeE
Confidence 78999999999999999999999999661 00 011111 1 245799999999999999999
Q ss_pred EEEecccCCCCCCcccHHHHHH
Q 046846 60 LFLWDSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 60 i~~v~~~p~t~~gKi~r~~l~~ 81 (87)
+.++++||+|++||++|+.|++
T Consensus 507 i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 507 IVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEeccCCCCCccchhHHhHhh
Confidence 9999999999999999999975
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.74 E-value=6.6e-19 Score=118.74 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=62.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcccc----cC-CCC-------CCCHHHHHHHHHhhCCCCCCCceEEEecccCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRDQ----EK-SKP-------VLSLQELCTWAKDKLAPYKLPTRLFLWDSLPR 68 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~~----~~-~~~-------~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~ 68 (87)
|+||+||++|+||+|.|||++|.+||.|... .. ... ....+.+.+++.++|+.|++|..+.++++||+
T Consensus 417 R~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~Lp~y~~P~~~~~v~~lP~ 496 (620)
T 4dg8_A 417 RGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPHACVRVEALPL 496 (620)
T ss_dssp CSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHHSCGGGSCSEEEECSSCCC
T ss_pred cCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHhChhhcCCcEEEEECcCCC
Confidence 8999999999999999999999999976110 00 000 01122345677788999999999999999999
Q ss_pred CCCCcccHHHHHHHHH
Q 046846 69 NAMGKVNKKELKNQLA 84 (87)
Q Consensus 69 t~~gKi~r~~l~~~~~ 84 (87)
|++||++|+.|++.+.
T Consensus 497 t~~GKidR~~L~~~~~ 512 (620)
T 4dg8_A 497 TAHGKLDRAALLRRLE 512 (620)
T ss_dssp C----CCHHHHHHHTC
T ss_pred CcccCHhHHHHhhccc
Confidence 9999999999987653
No 27
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.74 E-value=1.3e-19 Score=126.56 Aligned_cols=85 Identities=22% Similarity=0.460 Sum_probs=3.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCceEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPTRLF 61 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~ 61 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+...+.+++.++++++|+.|++|..+.
T Consensus 479 R~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~ 558 (979)
T 3tsy_A 479 RLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVF 558 (979)
T ss_dssp ESCC----------------------------------------------------------------------------
T ss_pred CCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEE
Confidence 789999999999999999999999996511 0112233456789999999999999999999
Q ss_pred EecccCCCCCCcccHHHHHHHHHh
Q 046846 62 LWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 62 ~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++++||+|++||++|+.|++.+..
T Consensus 559 ~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 559 FTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp ------------------------
T ss_pred EeCCcCcCCCCCeeHHHHHHHHHh
Confidence 999999999999999999998754
No 28
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.73 E-value=1.7e-19 Score=119.74 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=0.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc-------------------ccCCCCCCCHHHHHHHHHhhCCCCCCCc-eE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD-------------------QEKSKPVLSLQELCTWAKDKLAPYKLPT-RL 60 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~-------------------~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i 60 (87)
|+||+||++|+||+|.|||++|.+||.|.. ....+...+.+++.++++++++.++.|. .+
T Consensus 437 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i 516 (550)
T 3rix_A 437 RLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV 516 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCce
Confidence 899999999999999999999999996511 1112234456789999999999887554 69
Q ss_pred EEecccCCCCCCcccHHHHHHHHHh
Q 046846 61 FLWDSLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 61 ~~v~~~p~t~~gKi~r~~l~~~~~~ 85 (87)
.++++||+|++||++|+.|++.+..
T Consensus 517 ~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 517 VFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp -------------------------
T ss_pred EEEeecCCCCCcceeHHHHHHHHHh
Confidence 9999999999999999999998764
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.73 E-value=3.1e-18 Score=113.62 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=69.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhC-CCCCCCceEEE
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKL-APYKLPTRLFL 62 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l-~~~~~p~~i~~ 62 (87)
|+||+||++|+||+|.|||++|.+||.|.. . .........+++.+++.+++ +.|+.|..+.+
T Consensus 459 R~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~ 538 (576)
T 3gqw_A 459 RIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDL 538 (576)
T ss_dssp ETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred cCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEE
Confidence 789999999999999999999999997621 0 01112223457888888888 67899999999
Q ss_pred ec--ccCCCCCCcccHHHHHHHHHh
Q 046846 63 WD--SLPRNAMGKVNKKELKNQLAA 85 (87)
Q Consensus 63 v~--~~p~t~~gKi~r~~l~~~~~~ 85 (87)
++ +||+|++||++|+.|++.+.+
T Consensus 539 v~~~~lP~t~~GKi~r~~l~~~~~~ 563 (576)
T 3gqw_A 539 LPPHSIPRTSSGKPARAEAKKRYQK 563 (576)
T ss_dssp ECSSCSCBCTTSSBCHHHHHHHHHH
T ss_pred ECCCCcCcCCCccchHHHHHHHHHH
Confidence 97 999999999999999999864
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.73 E-value=2.7e-18 Score=122.78 Aligned_cols=81 Identities=30% Similarity=0.418 Sum_probs=69.3
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c-------------cCCCCCCCHHHHHHHHHhhCCCCCCCceEEEe
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q-------------EKSKPVLSLQELCTWAKDKLAPYKLPTRLFLW 63 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~-------------~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v 63 (87)
|+||+||++|++|+|.|||++|.+||.|.. . .......+.+++++++++.|+.|++|..+.++
T Consensus 859 R~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l 938 (1304)
T 2vsq_A 859 RIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFL 938 (1304)
T ss_dssp EGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHHSCGGGSCSEEEEE
T ss_pred CCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHhChHhhhccEEEEe
Confidence 789999999999999999999999997611 0 01122456789999999999999999999999
Q ss_pred cccCCCCCCcccHHHHHH
Q 046846 64 DSLPRNAMGKVNKKELKN 81 (87)
Q Consensus 64 ~~~p~t~~gKi~r~~l~~ 81 (87)
++||+|+|||++|+.|.+
T Consensus 939 ~~lP~t~~GKidR~~L~~ 956 (1304)
T 2vsq_A 939 DELPLTTNGKVNKRLLPK 956 (1304)
T ss_dssp SCCCCCSSCSSCCSCCCC
T ss_pred cccCCCCCcccCHhhcCC
Confidence 999999999999987753
No 31
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.73 E-value=3.1e-18 Score=93.50 Aligned_cols=76 Identities=25% Similarity=0.328 Sum_probs=51.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc------------------cccCCCCC----CCHHHHHHHHHhhCC-CCCCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR------------------DQEKSKPV----LSLQELCTWAKDKLA-PYKLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~------------------~~~~~~~~----~~~~~l~~~~~~~l~-~~~~p 57 (87)
|+||||+++|.||+|.+||++|.+||++. .....+.. .+.+++..++++.+. .+..+
T Consensus 2 R~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 81 (109)
T 3gxs_A 2 NADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVT 81 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHHHHHHhhCCc
Confidence 89999999999999999999999999651 00111111 123456666666554 34455
Q ss_pred ceEEEec--ccCCCCCCcccHH
Q 046846 58 TRLFLWD--SLPRNAMGKVNKK 77 (87)
Q Consensus 58 ~~i~~v~--~~p~t~~gKi~r~ 77 (87)
..+.+++ +||+| |||++|.
T Consensus 82 ~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 82 PRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp CEEEEECTTCSCCC----CCCE
T ss_pred eEEEEECCCCccCC-CCceEEE
Confidence 5899998 99999 9999873
No 32
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.72 E-value=3.3e-19 Score=118.48 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=1.7
Q ss_pred CccceEEeCCeeecHHHHHHHHHhC-CCc-------------------ccccCCCC-------------CCCHHHHHHHH
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEK-KAK-------------------RDQEKSKP-------------VLSLQELCTWA 47 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~-~~v-------------------~~~~~~~~-------------~~~~~~l~~~~ 47 (87)
|+||+||++|+||+|.|||++|.+| +.+ .+....+. ....++|+++|
T Consensus 425 R~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 504 (562)
T 3ite_A 425 RKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQAC 504 (562)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred cccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHH
Confidence 7899999999999999999999887 321 00000111 11234799999
Q ss_pred HhhCCCCCCCceEEEecccCCC-CCCcccHHHHHHHHHh
Q 046846 48 KDKLAPYKLPTRLFLWDSLPRN-AMGKVNKKELKNQLAA 85 (87)
Q Consensus 48 ~~~l~~~~~p~~i~~v~~~p~t-~~gKi~r~~l~~~~~~ 85 (87)
+++|+.|++|..|.++++||+| ++||++|+.|++.+..
T Consensus 505 ~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 505 EQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp ---------------------------------------
T ss_pred HhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 9999999999999999999998 8999999999998764
No 33
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.62 E-value=2.8e-17 Score=109.48 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=67.3
Q ss_pred CccceEEeCCeeecHHHHHHHH-HhCCCcc-----c-c--------------cCCC--CCCCHHHHHHHHHhhCCC-CCC
Q 046846 1 TSADIMKVGGYKLSALEIESVL-LEKKAKR-----D-Q--------------EKSK--PVLSLQELCTWAKDKLAP-YKL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l-~~~~~v~-----~-~--------------~~~~--~~~~~~~l~~~~~~~l~~-~~~ 56 (87)
|+||+||++|+||+|.|||++| ..+|.|. + . ...+ ...+.+++.+++++.++. ++.
T Consensus 456 R~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 535 (590)
T 3kxw_A 456 RIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQL 535 (590)
T ss_dssp ESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999 6777542 0 0 0111 123456788999998885 778
Q ss_pred Cc-eEEEe--cccCCCCCCcccHHHHHHHHHhc
Q 046846 57 PT-RLFLW--DSLPRNAMGKVNKKELKNQLAAQ 86 (87)
Q Consensus 57 p~-~i~~v--~~~p~t~~gKi~r~~l~~~~~~~ 86 (87)
|. .+.++ ++||+|++||++|+.|++.+.+.
T Consensus 536 p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 536 EVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp CCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred ceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 86 66666 69999999999999999998764
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.55 E-value=4.3e-15 Score=96.23 Aligned_cols=75 Identities=17% Similarity=0.237 Sum_probs=55.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCcc-------------------cccCCCCCCC----HHHHHHHHHhhCCCC-CC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKR-------------------DQEKSKPVLS----LQELCTWAKDKLAPY-KL 56 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~-------------------~~~~~~~~~~----~~~l~~~~~~~l~~~-~~ 56 (87)
|+||+||++|++|+|.|||++|.+||.|. +... +...+ .+++.+++++.|+.+ +.
T Consensus 329 R~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~ 407 (436)
T 3qov_A 329 RSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILV 407 (436)
T ss_dssp BSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999661 1111 22222 568889999999988 89
Q ss_pred CceEEEec--ccCCCCCCcccHH
Q 046846 57 PTRLFLWD--SLPRNAMGKVNKK 77 (87)
Q Consensus 57 p~~i~~v~--~~p~t~~gKi~r~ 77 (87)
|..+.+++ +||+|+ ||++|.
T Consensus 408 p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 408 TPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp CCEEEEECTTCCC--------CE
T ss_pred ceEEEEeCCCcccCcC-CcceEE
Confidence 99999999 999999 999875
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.55 E-value=2.5e-15 Score=97.49 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=61.8
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----cc---------------CC-----CCCCCHHHHHHHHHhhCCCC-C
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----QE---------------KS-----KPVLSLQELCTWAKDKLAPY-K 55 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~~---------------~~-----~~~~~~~~l~~~~~~~l~~~-~ 55 (87)
|.||+||++|++|+|.|||++|.+||.|.. .. .. +...+.+++.++++++|+.+ .
T Consensus 333 R~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 412 (443)
T 2y4o_A 333 RSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVG 412 (443)
T ss_dssp ESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999997610 00 00 01123467899999999876 4
Q ss_pred CCceEEEe--cccCCCCCCcccHHH
Q 046846 56 LPTRLFLW--DSLPRNAMGKVNKKE 78 (87)
Q Consensus 56 ~p~~i~~v--~~~p~t~~gKi~r~~ 78 (87)
.|..+.++ ++||+|++||++|..
T Consensus 413 ~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 413 VSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp CCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred CceEEEEeCCCcccCccCCcceEEE
Confidence 89999888 499999999999864
No 36
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.50 E-value=1.1e-14 Score=94.26 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=61.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhCCCccc----c---------------cCCCCC---CCHHHHHHHHHhhCCCC-CCC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEKKAKRD----Q---------------EKSKPV---LSLQELCTWAKDKLAPY-KLP 57 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~~~v~~----~---------------~~~~~~---~~~~~l~~~~~~~l~~~-~~p 57 (87)
|+||+||++|++|+|.+||++|.+||.|.. . ...+.. .+.+++.++++++|+.| ..|
T Consensus 331 R~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p 410 (437)
T 2y27_A 331 RSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVT 410 (437)
T ss_dssp EGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999996610 0 011111 23467899999999988 589
Q ss_pred ceEEEe--cccCCCCCCcccHHH
Q 046846 58 TRLFLW--DSLPRNAMGKVNKKE 78 (87)
Q Consensus 58 ~~i~~v--~~~p~t~~gKi~r~~ 78 (87)
..+.++ ++||+|+ ||++|..
T Consensus 411 ~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 411 AVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEEEECCTTCSCCCS-SSCCCEE
T ss_pred eEEEEeCCCCccCCC-CcceEEE
Confidence 899998 5999999 9999853
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=92.55 E-value=0.046 Score=37.56 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=22.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHh
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE 24 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~ 24 (87)
|.+++|+++|.+|++.+||++|..
T Consensus 435 R~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 435 RKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred ecCCeEEccccCCCHHHHHHHHHH
Confidence 789999999999999999999884
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=92.07 E-value=0.064 Score=36.63 Aligned_cols=25 Identities=4% Similarity=0.088 Sum_probs=23.0
Q ss_pred CccceEEeCCeeecHHHHHHHHHhC
Q 046846 1 TSADIMKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~~ 25 (87)
|.|++|++.|.++++.+||++|...
T Consensus 423 R~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 423 RENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp ETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred ecCCEEEeeeeECCHHHHHHHHHHH
Confidence 7899999999999999999999854
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=90.38 E-value=0.11 Score=35.60 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=22.4
Q ss_pred CccceEEeCCeeecHHHHHHHHHh
Q 046846 1 TSADIMKVGGYKLSALEIESVLLE 24 (87)
Q Consensus 1 R~~d~i~~~G~~i~p~eIE~~l~~ 24 (87)
|.|+++++.|.++++.+||.+|..
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred ecCCeEEeeeeECCHHHHHHHHHH
Confidence 789999999999999999999875
No 40
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=63.25 E-value=7.1 Score=17.28 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=12.6
Q ss_pred eeecHHHHHHHHHhCC
Q 046846 11 YKLSALEIESVLLEKK 26 (87)
Q Consensus 11 ~~i~p~eIE~~l~~~~ 26 (87)
.+++|.|||+.-...|
T Consensus 18 vrlypdeiealksrvp 33 (53)
T 2kke_A 18 VRLYPDEIEALKSRVP 33 (53)
T ss_dssp EEECHHHHHHHHTTCC
T ss_pred EEeChhHHHHHHhcCC
Confidence 5789999998765554
No 41
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=50.34 E-value=22 Score=17.39 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=16.3
Q ss_pred cceEE-eCCeee---cHHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKL---SALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i---~p~eIE~~l~~~ 25 (87)
.|.|. ++|..| +..++...+...
T Consensus 48 GD~I~~ing~~v~~~~~~~~~~~l~~~ 74 (91)
T 2vsp_A 48 EDVIIEVNGVNVLDEPYEKVVDRIQSS 74 (91)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 45554 799988 578888777664
No 42
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=46.66 E-value=26 Score=17.15 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=17.6
Q ss_pred cceE-EeCCeee---cHHHHHHHHHhCCC
Q 046846 3 ADIM-KVGGYKL---SALEIESVLLEKKA 27 (87)
Q Consensus 3 ~d~i-~~~G~~i---~p~eIE~~l~~~~~ 27 (87)
.|.| .++|..+ +..++.+.|...+.
T Consensus 47 GD~I~~Ing~~v~~~~~~~~~~~l~~~~~ 75 (88)
T 1kwa_A 47 GDEIREINGISVANQTVEQLQKMLREMRG 75 (88)
T ss_dssp TCEEEEETTEEGGGSCHHHHHHHHHHCCE
T ss_pred CCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence 3444 4799988 47888888877654
No 43
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.55 E-value=27 Score=17.32 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=15.9
Q ss_pred cceEE-eCCeee---cHHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKL---SALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i---~p~eIE~~l~~~ 25 (87)
.|.|. ++|..| +..++.+.+...
T Consensus 52 GD~Il~Ing~~v~~~~~~~~~~~l~~~ 78 (90)
T 1y7n_A 52 GHRIIEINGQSVVATPHEKIVHILSNA 78 (90)
T ss_dssp SCEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44444 799988 577887777643
No 44
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=45.53 E-value=26 Score=16.96 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=15.8
Q ss_pred ccceEE-eCCeee---cHHHHHHHHHh
Q 046846 2 SADIMK-VGGYKL---SALEIESVLLE 24 (87)
Q Consensus 2 ~~d~i~-~~G~~i---~p~eIE~~l~~ 24 (87)
..|.|. ++|..| +..++...+..
T Consensus 48 ~GD~I~~ing~~v~~~~~~~~~~~l~~ 74 (90)
T 2eaq_A 48 VDDEIIAINNTKFSYNDSKEWEEAMAK 74 (90)
T ss_dssp TTCEEEEETTEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCEEccCCCHHHHHHHHHh
Confidence 345554 799988 67777777764
No 45
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=44.22 E-value=28 Score=16.80 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=14.3
Q ss_pred cceEE-eCCeeecH---HHHHHHHHhCC
Q 046846 3 ADIMK-VGGYKLSA---LEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i~-~~G~~i~p---~eIE~~l~~~~ 26 (87)
.|.|. ++|..|.- .++...+...+
T Consensus 47 GD~I~~ing~~v~~~~~~~~~~~l~~~~ 74 (87)
T 2pa1_A 47 GDIIVAINGESAEGMLHAEAQSKIRQSP 74 (87)
T ss_dssp TCEEEEETTEESTTCCHHHHHHHHHTCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 34443 67777764 66666666543
No 46
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=43.46 E-value=38 Score=18.23 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=32.2
Q ss_pred ceEEeCCeeecHHHHHHHHHhCC--CcccccCCCCCCCHHHHHHHHHhhCCCC
Q 046846 4 DIMKVGGYKLSALEIESVLLEKK--AKRDQEKSKPVLSLQELCTWAKDKLAPY 54 (87)
Q Consensus 4 d~i~~~G~~i~p~eIE~~l~~~~--~v~~~~~~~~~~~~~~l~~~~~~~l~~~ 54 (87)
+.|-.+|. ++...++....... +|.+. .+.+..-+.|+..+.+.++..
T Consensus 28 ~iI~t~Gs-i~~~~l~~I~~~~~~r~VIi~--TD~D~~GekIRk~i~~~lp~~ 77 (119)
T 2fcj_A 28 VIVCTNGT-ISDARLEELADELEGYDVYLL--ADADEAGEKLRRQFRRMFPEA 77 (119)
T ss_dssp EEEECCSC-CCHHHHHHHHHHTTTSEEEEE--CCSSHHHHHHHHHHHHHCTTS
T ss_pred CEEEeCCc-cCHHHHHHHHHHhcCCCEEEE--ECCCccHHHHHHHHHHHCCCC
Confidence 56778998 98888887666553 33332 333445567888888888765
No 47
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=43.38 E-value=17 Score=14.10 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=11.1
Q ss_pred eeecHHHHHHHHHhCC
Q 046846 11 YKLSALEIESVLLEKK 26 (87)
Q Consensus 11 ~~i~p~eIE~~l~~~~ 26 (87)
..++|.+||+-+.+.|
T Consensus 11 lmlspddi~qw~s~dp 26 (28)
T 2b3g_B 11 LMLSPDDIEQWFTEDP 26 (28)
T ss_dssp GGCCHHHHHHHHHC--
T ss_pred hhcChHHHHHHhhcCC
Confidence 4578999998877655
No 48
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=42.80 E-value=22 Score=18.06 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=15.4
Q ss_pred cceEE-eCCeeec---HHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKLS---ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i~---p~eIE~~l~~~ 25 (87)
.|.|. ++|..|. ..++.+.|...
T Consensus 58 GD~Il~ING~~v~~~~~~~~~~~l~~~ 84 (97)
T 2ejy_A 58 GDEILEINGTNVTNHSVDQLQKAMKET 84 (97)
T ss_dssp TCEEEEETTBCCCSSCSHHHHHHHHHC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 34444 7888887 67777777654
No 49
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=38.22 E-value=18 Score=18.82 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=33.1
Q ss_pred ceEEeCCeeecH---HHHHHHHHhCCCcccccCCCCCCCHHHHHHHHHhhCCC
Q 046846 4 DIMKVGGYKLSA---LEIESVLLEKKAKRDQEKSKPVLSLQELCTWAKDKLAP 53 (87)
Q Consensus 4 d~i~~~G~~i~p---~eIE~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~~ 53 (87)
-++.+|..-+.+ .+|+.+|.+|+.|-+........+..++.+.+.+....
T Consensus 20 pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a 72 (98)
T 1jo0_A 20 PVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKA 72 (98)
T ss_dssp CSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCC
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCC
Confidence 345566666654 56778899998875555555556677777777776543
No 50
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=35.03 E-value=44 Score=16.53 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=16.0
Q ss_pred cceEE-eCCeee-cHHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKL-SALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i-~p~eIE~~l~~~ 25 (87)
.|+|. ++|..| +..++...+...
T Consensus 25 GD~Il~InG~~v~~~~~l~~~l~~~ 49 (94)
T 2kl1_A 25 GDRIAAIDGQPINTSEQIVSYVREK 49 (94)
T ss_dssp TCEEEEETTBCCCCHHHHHHHHHHS
T ss_pred CCEEEEECCEECCCHHHHHHHHHhC
Confidence 45444 788888 567777777765
No 51
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=34.83 E-value=39 Score=17.66 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.8
Q ss_pred cCCCCCCcccHHHHHHHH
Q 046846 66 LPRNAMGKVNKKELKNQL 83 (87)
Q Consensus 66 ~p~t~~gKi~r~~l~~~~ 83 (87)
+-...+|.|.+..+...+
T Consensus 94 ~D~d~~G~I~~~el~~~l 111 (153)
T 2ovk_B 94 FDEDGQGFIPEDYLKDLL 111 (153)
T ss_dssp TCSSCSSCCCHHHHHHHH
T ss_pred HCCCCCCeEcHHHHHHHH
Confidence 444555666665555544
No 52
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=34.67 E-value=44 Score=16.42 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=13.2
Q ss_pred ceE-EeCCeeecH---HHHHHHHHhC
Q 046846 4 DIM-KVGGYKLSA---LEIESVLLEK 25 (87)
Q Consensus 4 d~i-~~~G~~i~p---~eIE~~l~~~ 25 (87)
|.| .++|..|.- .++...|...
T Consensus 59 D~I~~ing~~v~~~~~~~~~~~l~~~ 84 (96)
T 2ego_A 59 DTIASVNGLNVEGIRHREIVDIIKAS 84 (96)
T ss_dssp CEEEEETTEECTTCCHHHHHHHHHHT
T ss_pred CEEEEECCEECCCCCHHHHHHHHHhC
Confidence 444 367777755 6666666554
No 53
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=34.62 E-value=46 Score=16.66 Aligned_cols=21 Identities=5% Similarity=0.162 Sum_probs=13.6
Q ss_pred EEeCCeee---cHHHHHHHHHhCC
Q 046846 6 MKVGGYKL---SALEIESVLLEKK 26 (87)
Q Consensus 6 i~~~G~~i---~p~eIE~~l~~~~ 26 (87)
+.++|..| ...++...|...+
T Consensus 73 ~~vng~~v~~~~~~~~~~~l~~~~ 96 (104)
T 2z17_A 73 ANINGVSTEGFTYKQVVDLIRSSG 96 (104)
T ss_dssp CEETTEECTTCCHHHHHHHHHHTT
T ss_pred EEECCEEcCCCCHHHHHHHHHhCC
Confidence 34788887 4567766666553
No 54
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.51 E-value=6.7 Score=20.55 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=17.4
Q ss_pred cceEEeCCeee----cHHHHHHHHHhC
Q 046846 3 ADIMKVGGYKL----SALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~~~G~~i----~p~eIE~~l~~~ 25 (87)
+|+|+-+|+++ +|+|+.+.+...
T Consensus 19 kdiikkngfkvrtvrspqelkdsieel 45 (134)
T 2l69_A 19 KDIIKKNGFKVRTVRSPQELKDSIEEL 45 (134)
T ss_dssp HHHHHHTTCEEEEECSHHHHHHHHHHH
T ss_pred HHHHHhcCceEEEecCHHHHHHHHHHH
Confidence 56778888887 788887777664
No 55
>1z9i_A Epidermal growth factor receptor; juxtamembrane structure EGFR micelle, transferase; NMR {Homo sapiens}
Probab=34.39 E-value=21 Score=16.48 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=10.2
Q ss_pred ccCCCCCC-cccHHHHH
Q 046846 65 SLPRNAMG-KVNKKELK 80 (87)
Q Consensus 65 ~~p~t~~g-Ki~r~~l~ 80 (87)
.=|+|+|| |.+...++
T Consensus 21 ~EPL~Psg~~pN~a~lR 37 (53)
T 1z9i_A 21 VEPLTPSGEAPNQALLR 37 (53)
T ss_dssp SSSSCSSSSCHHHHHHH
T ss_pred cCcCCcCCCCcchHHHh
Confidence 35889988 55554443
No 56
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=34.29 E-value=52 Score=17.12 Aligned_cols=24 Identities=4% Similarity=0.137 Sum_probs=16.2
Q ss_pred cceEE-eCCeeec---HHHHHHHHHhCC
Q 046846 3 ADIMK-VGGYKLS---ALEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i~-~~G~~i~---p~eIE~~l~~~~ 26 (87)
.|.|. ++|..|. ..++...|..++
T Consensus 66 GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 93 (123)
T 1ueq_A 66 GDVIVYINEVCVLGHTHADVVKLFQSVP 93 (123)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 34444 7888884 677777777753
No 57
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=34.18 E-value=45 Score=16.33 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=13.2
Q ss_pred cceEE-eCCeeecH---HHHHHHHHhC
Q 046846 3 ADIMK-VGGYKLSA---LEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i~p---~eIE~~l~~~ 25 (87)
.|.|. ++|..|.- .++...+...
T Consensus 51 GD~I~~ing~~v~~~~~~~~~~~l~~~ 77 (94)
T 1vb7_A 51 GDIIVAINGQSAENMLHAEAQSKIRQS 77 (94)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 34443 67777755 5666665554
No 58
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=33.98 E-value=51 Score=16.92 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.2
Q ss_pred eEEeCCeee---cHHHHHHHHHhCC
Q 046846 5 IMKVGGYKL---SALEIESVLLEKK 26 (87)
Q Consensus 5 ~i~~~G~~i---~p~eIE~~l~~~~ 26 (87)
++-+||.++ ...++-+.|.+.|
T Consensus 53 I~~VNG~~v~g~~h~evv~lLk~~~ 77 (95)
T 3gge_A 53 IESINGENIVGWRHYDVAKKLKELK 77 (95)
T ss_dssp EEEETTEECTTCCHHHHHHHHHHSC
T ss_pred EEEECCEEccCCCHHHHHHHHHhCC
Confidence 345899888 6788888888876
No 59
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=33.80 E-value=14 Score=18.70 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.8
Q ss_pred CCeeecHHHHHHHHHhC
Q 046846 9 GGYKLSALEIESVLLEK 25 (87)
Q Consensus 9 ~G~~i~p~eIE~~l~~~ 25 (87)
.|..|.|.+||+++.+.
T Consensus 4 ~~e~vW~~~lE~aF~ea 20 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEA 20 (82)
T ss_dssp GGSCCSCHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHH
Confidence 56789999999888763
No 60
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=33.10 E-value=44 Score=15.89 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=14.7
Q ss_pred cceE-EeCCeeec---HHHHHHHHHhC
Q 046846 3 ADIM-KVGGYKLS---ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i-~~~G~~i~---p~eIE~~l~~~ 25 (87)
.|.| .++|..|. ..++...+...
T Consensus 47 GD~I~~vng~~v~~~~~~~~~~~l~~~ 73 (85)
T 2i04_A 47 GDVIVSVNDTCVLGHTHAQVVKIFQSI 73 (85)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3444 47888884 56776666654
No 61
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=32.74 E-value=48 Score=16.28 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=15.5
Q ss_pred cceEE-eCCeeec---HHHHHHHHHhCC
Q 046846 3 ADIMK-VGGYKLS---ALEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i~-~~G~~i~---p~eIE~~l~~~~ 26 (87)
.|.|. ++|..|. ..++...+...+
T Consensus 54 GD~I~~ing~~v~~~~~~~~~~~l~~~~ 81 (98)
T 2jxo_A 54 QDRIVEVNGVCMEGKQHGDVVSAIRAGG 81 (98)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHTTT
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 44444 7888876 467777776654
No 62
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=32.25 E-value=49 Score=16.50 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.1
Q ss_pred cceE-EeCCeee---cHHHHHHHHHhC
Q 046846 3 ADIM-KVGGYKL---SALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i-~~~G~~i---~p~eIE~~l~~~ 25 (87)
.|.| .++|..| ...++...|...
T Consensus 59 GD~I~~Ing~~v~~~~~~~~~~~l~~~ 85 (101)
T 2yt7_A 59 GDRLTAINGTSLVGLPLAACQAAVRET 85 (101)
T ss_dssp TCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3444 4899998 778888888764
No 63
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=31.20 E-value=34 Score=16.77 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=16.5
Q ss_pred ceEEeCCeeecHHHHHHHHHhC
Q 046846 4 DIMKVGGYKLSALEIESVLLEK 25 (87)
Q Consensus 4 d~i~~~G~~i~p~eIE~~l~~~ 25 (87)
+.|.+.|..-+|.++.+.|..-
T Consensus 21 gtVsvsg~~~sp~D~~~~lskk 42 (72)
T 4evu_A 21 DSVKFTGNYGNMTEISYQVAKR 42 (72)
T ss_dssp EEEEEEECCSSHHHHHHHHHHH
T ss_pred cEEEECCccCChHHHHHHHHHH
Confidence 4566788888888888887653
No 64
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=30.96 E-value=49 Score=17.72 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=17.0
Q ss_pred ceEEeCCeee---cHHHHHHHHHhC
Q 046846 4 DIMKVGGYKL---SALEIESVLLEK 25 (87)
Q Consensus 4 d~i~~~G~~i---~p~eIE~~l~~~ 25 (87)
-++.++|..| +..++-+.|...
T Consensus 73 ~Il~VnG~~v~~~s~~d~~~~l~~~ 97 (126)
T 1wif_A 73 VLISVGHANVLGYTLREFLKLLQNI 97 (126)
T ss_dssp BEEEESSSCCTTCCHHHHHHHHTSC
T ss_pred EEEEECCEEcCCCCHHHHHHHHhcC
Confidence 3445899999 688888888875
No 65
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=30.86 E-value=62 Score=16.94 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.0
Q ss_pred EEeCCeeecHHHHHHHHHhCCCc
Q 046846 6 MKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.+-|.+|...+|+.+|....++
T Consensus 53 ItIEG~dIdfd~I~~~IE~~Ggv 75 (100)
T 3bpd_A 53 ITILGNNLDYEQIKGVIEDMGGV 75 (100)
T ss_dssp EEEEEEEECHHHHHHHHHTTTCE
T ss_pred EEEEecCCCHHHHHHHHHHcCCe
Confidence 45789999999999999998765
No 66
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=30.53 E-value=59 Score=16.60 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=14.8
Q ss_pred cceE-EeCCeeec---HHHHHHHHHhCC
Q 046846 3 ADIM-KVGGYKLS---ALEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i-~~~G~~i~---p~eIE~~l~~~~ 26 (87)
.|.| .++|..|. ..++...|....
T Consensus 70 GD~I~~vng~~v~~~~~~~~~~~l~~~~ 97 (113)
T 1va8_A 70 GDEVLEINGIEIRGKDVNEVFDLLSDMH 97 (113)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 3444 47888875 566666665543
No 67
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=30.43 E-value=55 Score=16.18 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=16.7
Q ss_pred ccceEE-eCCeeec-HHHHHHHHHhC
Q 046846 2 SADIMK-VGGYKLS-ALEIESVLLEK 25 (87)
Q Consensus 2 ~~d~i~-~~G~~i~-p~eIE~~l~~~ 25 (87)
..|.|. ++|..|. ..++...+...
T Consensus 20 ~GD~I~~InG~~v~~~~~l~~~l~~~ 45 (91)
T 2kjp_A 20 VGDKIISADGKNYQSAEKLIDYISSK 45 (91)
T ss_dssp SSCEEEEETTBCCSSHHHHHHHHSSC
T ss_pred CCCEEEEECCEECCCHHHHHHHHHcC
Confidence 345555 8999984 67777777765
No 68
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=30.32 E-value=59 Score=16.50 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=14.7
Q ss_pred cceE-EeCCeeec---HHHHHHHHHhC
Q 046846 3 ADIM-KVGGYKLS---ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i-~~~G~~i~---p~eIE~~l~~~ 25 (87)
.|.| .++|..|. ..++..++.+.
T Consensus 56 GD~Il~vng~~v~~~~~~~l~~~l~~~ 82 (94)
T 3kzd_A 56 GDEILEINNRAADALNSSMLKDFLSQP 82 (94)
T ss_dssp TCEEEEETTEEGGGCCHHHHHHHHHSS
T ss_pred CCEEEEECCEECCCCCHHHHHHHHhCC
Confidence 3444 47888875 57777766543
No 69
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=29.87 E-value=62 Score=16.65 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=10.4
Q ss_pred eCCeeec---HHHHHHHHHhC
Q 046846 8 VGGYKLS---ALEIESVLLEK 25 (87)
Q Consensus 8 ~~G~~i~---p~eIE~~l~~~ 25 (87)
++|..|. ..++-..|...
T Consensus 63 InG~~v~~~~~~d~~~~i~~~ 83 (111)
T 1vae_A 63 IQGVDCKWLTVSEVMKLLKSF 83 (111)
T ss_dssp ETTEECSSCCHHHHHHHHHHT
T ss_pred ECCEECCCCCHHHHHHHHHhC
Confidence 6776664 45555555544
No 70
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=29.58 E-value=55 Score=15.89 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=14.1
Q ss_pred EEeCCeee---cHHHHHHHHHhCC
Q 046846 6 MKVGGYKL---SALEIESVLLEKK 26 (87)
Q Consensus 6 i~~~G~~i---~p~eIE~~l~~~~ 26 (87)
+.++|..+ ...++...+...+
T Consensus 47 l~ing~~v~~~~~~~~~~~i~~~~ 70 (88)
T 3e17_A 47 LKINGTVTENMSLTDARKLIEKSR 70 (88)
T ss_dssp EEETTEECTTCCHHHHHHHHHHTT
T ss_pred EEECCEECCCCCHHHHHHHHHcCC
Confidence 34788887 5667777776654
No 71
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.71 E-value=12 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.063 Sum_probs=12.0
Q ss_pred CeeecHHHHHHHHHhC
Q 046846 10 GYKLSALEIESVLLEK 25 (87)
Q Consensus 10 G~~i~p~eIE~~l~~~ 25 (87)
|.++...+|+..+...
T Consensus 4 G~~~t~~e~~~~~~~~ 19 (110)
T 1pva_A 4 KDLLKADDIKKALDAV 19 (110)
T ss_dssp HHHSCHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHhc
Confidence 6677788888887765
No 72
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=28.51 E-value=60 Score=16.04 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=28.3
Q ss_pred cceEEeCCeeecHHHHHHHHHhC----CCcccccCCCCCCCHHH---HHHHHHh
Q 046846 3 ADIMKVGGYKLSALEIESVLLEK----KAKRDQEKSKPVLSLQE---LCTWAKD 49 (87)
Q Consensus 3 ~d~i~~~G~~i~p~eIE~~l~~~----~~v~~~~~~~~~~~~~~---l~~~~~~ 49 (87)
+..+-++|..+..++++..|... |...+....+....... +.+.|+.
T Consensus 29 dg~i~~~~~~v~~~~L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~ 82 (99)
T 2pfu_A 29 DNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQ 82 (99)
T ss_dssp TTEEEETTEEECSSSHHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCEEECCEecCHHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45677889999998888888764 22222333444555554 4444544
No 73
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=28.49 E-value=69 Score=17.20 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=16.1
Q ss_pred cceEE-eCCeeec---HHHHHHHHHhCC
Q 046846 3 ADIMK-VGGYKLS---ALEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i~-~~G~~i~---p~eIE~~l~~~~ 26 (87)
.|.|. ++|..|. ..++...|...+
T Consensus 85 GD~I~~vng~~v~~~~~~~~~~~l~~~~ 112 (139)
T 2vz5_A 85 GDKIMQVNGWDMTMVTHDQARKRLTKRS 112 (139)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHCCTT
T ss_pred CCEEEEECCEEcCCCCHHHHHHHHHhCC
Confidence 45554 7888887 677777776543
No 74
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=28.42 E-value=61 Score=16.05 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=14.9
Q ss_pred cceE-EeCCeeecH---HHHHHHHHhCC
Q 046846 3 ADIM-KVGGYKLSA---LEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i-~~~G~~i~p---~eIE~~l~~~~ 26 (87)
.|.| .++|..|.- .++-+.|...+
T Consensus 51 GD~I~~vng~~v~~~~~~~~~~~l~~~~ 78 (96)
T 1ujv_A 51 GDLIVEINQQNVQNLSHTEVVDILKDCP 78 (96)
T ss_dssp SCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 3444 478888753 66666776653
No 75
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=28.21 E-value=58 Score=15.72 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=12.5
Q ss_pred cceEE-eCCeeec-HHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKLS-ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i~-p~eIE~~l~~~ 25 (87)
.|+|. ++|..|. ..++...+..+
T Consensus 40 GD~I~~ing~~v~~~~d~~~~~~~~ 64 (87)
T 2i6v_A 40 GDMAVALNGLDLTDPNVMNTLFQSM 64 (87)
T ss_dssp TCEEEEETTEETTCHHHHHHHHHTG
T ss_pred CCEEEEECCEECCCHHHHHHHHHhc
Confidence 34444 6777664 45565555543
No 76
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.88 E-value=60 Score=15.84 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=15.9
Q ss_pred cceE-EeCCeee--cHHHHHHHHHhC
Q 046846 3 ADIM-KVGGYKL--SALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i-~~~G~~i--~p~eIE~~l~~~ 25 (87)
.|.| .++|..| +..++.+.|...
T Consensus 51 GD~I~~ing~~v~~~~~~~~~~l~~~ 76 (91)
T 2e7k_A 51 GDIIKEVNGQPVGSDPRALQELLRNA 76 (91)
T ss_dssp TCEEEEETTEECTTCHHHHHHHHHTC
T ss_pred CCEEEEECCEECCCCHHHHHHHHHcC
Confidence 3444 4799988 677777777654
No 77
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=27.69 E-value=60 Score=15.76 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=14.4
Q ss_pred eEEeCCeee---cHHHHHHHHHhCC
Q 046846 5 IMKVGGYKL---SALEIESVLLEKK 26 (87)
Q Consensus 5 ~i~~~G~~i---~p~eIE~~l~~~~ 26 (87)
++.++|..| ...++-..|...+
T Consensus 53 I~~ing~~v~~~~~~~~~~~l~~~~ 77 (93)
T 3o46_A 53 LREVNGIPVEDKRPEEIIQILAQSQ 77 (93)
T ss_dssp EEEETTEESTTSCHHHHHHHHHHCC
T ss_pred EEEECCEECCCCCHHHHHHHHHhCC
Confidence 344788887 5667777766554
No 78
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=27.38 E-value=51 Score=17.32 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=31.8
Q ss_pred ceEEeCCeeecH---HHHHHHHHhCCCcccccCCCCCCCHHHHHHHHHhhCC
Q 046846 4 DIMKVGGYKLSA---LEIESVLLEKKAKRDQEKSKPVLSLQELCTWAKDKLA 52 (87)
Q Consensus 4 d~i~~~G~~i~p---~eIE~~l~~~~~v~~~~~~~~~~~~~~l~~~~~~~l~ 52 (87)
-++.+|..-+.+ .+|+.+|.+++.|-+....+...+..++.+.+.+...
T Consensus 19 pvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~ 70 (104)
T 1rq8_A 19 PIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATR 70 (104)
T ss_dssp CSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhC
Confidence 345566666655 5677888899887555555555566677776666543
No 79
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=26.80 E-value=74 Score=16.53 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=15.9
Q ss_pred ceEEeCCeee---cHHHHHHHHHh
Q 046846 4 DIMKVGGYKL---SALEIESVLLE 24 (87)
Q Consensus 4 d~i~~~G~~i---~p~eIE~~l~~ 24 (87)
.++.++|..| +..++...+..
T Consensus 62 ~I~~Ing~~v~~~s~~dv~~~i~~ 85 (101)
T 3qik_A 62 KIYSINEDLVFLRPFSEVESILNQ 85 (101)
T ss_dssp BEEEETTEESTTSCHHHHHHHHHH
T ss_pred EEEEECCEEcCcCCHHHHHHHHHH
Confidence 3445899998 67888887766
No 80
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=25.76 E-value=46 Score=16.30 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=11.3
Q ss_pred CeeecHHHHHHHHHhC
Q 046846 10 GYKLSALEIESVLLEK 25 (87)
Q Consensus 10 G~~i~p~eIE~~l~~~ 25 (87)
|.++...+|+..+...
T Consensus 3 ~~~~~~~e~~~l~~~~ 18 (108)
T 2kyc_A 3 TDILSPSDIAAALRDC 18 (108)
T ss_dssp TSSSCHHHHHHHHTTS
T ss_pred cccCCHHHHHHHHHHc
Confidence 4567778888877664
No 81
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=25.53 E-value=72 Score=17.69 Aligned_cols=72 Identities=7% Similarity=-0.039 Sum_probs=32.7
Q ss_pred eecHHHHHHHHHhCCCc-------ccccCCCCCCCHHHHHHHHHhhCCCCCCCceE-EEecccCCCCCCcccHHHHHHHH
Q 046846 12 KLSALEIESVLLEKKAK-------RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRL-FLWDSLPRNAMGKVNKKELKNQL 83 (87)
Q Consensus 12 ~i~p~eIE~~l~~~~~v-------~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i-~~v~~~p~t~~gKi~r~~l~~~~ 83 (87)
.|+..|+..+|..+..- ......+..++..+....+...+........+ .....+-...+|.|....+...+
T Consensus 73 ~i~~~el~~~l~~lg~~~~~~~~~~l~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l 152 (196)
T 3dtp_E 73 FISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT 152 (196)
T ss_dssp BCCHHHHHHHHHTTSCCCCHHHHHHHHTTSSSCCBHHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCcHHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 46666666666554211 00001133455555555554433221111111 11134556667777777776655
No 82
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=25.10 E-value=83 Score=16.49 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=16.7
Q ss_pred cceEE-eCCeeec---HHHHHHHHHhCC
Q 046846 3 ADIMK-VGGYKLS---ALEIESVLLEKK 26 (87)
Q Consensus 3 ~d~i~-~~G~~i~---p~eIE~~l~~~~ 26 (87)
.|.|. ++|..|. ..++-..|...+
T Consensus 65 GD~Il~vng~~v~~~~~~~~~~~l~~~~ 92 (129)
T 2kpk_A 65 GDVIVSVNDTCVLGHTHAQVVKIFQSIP 92 (129)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 44444 8999884 677777777764
No 83
>1ugi_A UGI, uracil-DNA glycosylase inhibitor; protein mimicry of DNA, protein inhibitor, hydrolase inhibitor; 1.55A {Bacillus phage PBS2} SCOP: d.17.5.1 PDB: 1eui_C 1lqm_B 1lqg_C 1uug_B 2j8x_B 2ugi_A 2uug_C 2zhx_B 1udi_I 1ugh_I
Probab=24.92 E-value=56 Score=15.68 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=15.6
Q ss_pred eCCeeecHHHHHHHHHhCCC
Q 046846 8 VGGYKLSALEIESVLLEKKA 27 (87)
Q Consensus 8 ~~G~~i~p~eIE~~l~~~~~ 27 (87)
-...-.-|+|+|.++..-|.
T Consensus 19 qesilmlpeeveevignkpe 38 (84)
T 1ugi_A 19 QESILMLPEEVEEVIGNKPE 38 (84)
T ss_dssp CCCEEECHHHHHHHHSSCCS
T ss_pred ehhhhhChHHHHHHhcCCCc
Confidence 34556789999999988774
No 84
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=24.49 E-value=76 Score=16.54 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.5
Q ss_pred EEeCCeeecHHHHHHHHHhCCCc
Q 046846 6 MKVGGYKLSALEIESVLLEKKAK 28 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~~~v 28 (87)
|.+-|.+|.-.+|+.+|....++
T Consensus 53 itiEG~~id~d~I~~~IE~~Gg~ 75 (97)
T 2raq_A 53 VTIQGNDLDFDEITRAIESYGGS 75 (97)
T ss_dssp EEEECSSCCHHHHHHHHHHTTCE
T ss_pred EEEEecCCCHHHHHHHHHHcCCe
Confidence 45789999999999999998765
No 85
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=24.08 E-value=65 Score=14.89 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=10.9
Q ss_pred EeCCeeec---HHHHHHHHHh
Q 046846 7 KVGGYKLS---ALEIESVLLE 24 (87)
Q Consensus 7 ~~~G~~i~---p~eIE~~l~~ 24 (87)
.++|..|. ..++...+..
T Consensus 48 ~ing~~v~~~~~~~~~~~l~~ 68 (81)
T 2rcz_A 48 KINGTVTENMSLTDAKTLIER 68 (81)
T ss_dssp EETTEECTTCCHHHHHHHHHT
T ss_pred EECCEECCCCCHHHHHHHHHC
Confidence 36777774 5566655554
No 86
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.04 E-value=79 Score=16.46 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=14.6
Q ss_pred eEEeCCeee---cHHHHHHHHHhC
Q 046846 5 IMKVGGYKL---SALEIESVLLEK 25 (87)
Q Consensus 5 ~i~~~G~~i---~p~eIE~~l~~~ 25 (87)
++.++|..| ...++...|...
T Consensus 85 I~~ing~~v~~~~~~~~~~~l~~~ 108 (126)
T 2yuy_A 85 IIKVNGESVIGKTYSQVIALIQNS 108 (126)
T ss_dssp CCEETTEECSSCCHHHHHHHHHTC
T ss_pred EEEECCEECCCCCHHHHHHHHHcC
Confidence 344788888 577777777654
No 87
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=23.94 E-value=55 Score=17.06 Aligned_cols=18 Identities=39% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCeeecHHHHHHHHHhCC
Q 046846 9 GGYKLSALEIESVLLEKK 26 (87)
Q Consensus 9 ~G~~i~p~eIE~~l~~~~ 26 (87)
+|.+..+++||..|.++.
T Consensus 96 gg~~~~~~~le~~L~~~g 113 (118)
T 3evi_A 96 GGINLKLEELEWKLAEVG 113 (118)
T ss_dssp TCSSCCHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHcC
Confidence 466788999999998764
No 88
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=23.75 E-value=74 Score=15.48 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=13.9
Q ss_pred cceEE-eCCeeecH---HHHHHHHHhC
Q 046846 3 ADIMK-VGGYKLSA---LEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i~p---~eIE~~l~~~ 25 (87)
.|.|. ++|..|.- .++...+...
T Consensus 51 GD~I~~ing~~v~~~~~~~~~~~l~~~ 77 (96)
T 2v90_A 51 GDRLVAVAGESVEGLGHEETVSRIQGQ 77 (96)
T ss_dssp TEEEEEETTEECTTCCHHHHHHHHHTT
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 34444 78888764 6666666553
No 89
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.36 E-value=88 Score=16.21 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=12.4
Q ss_pred cceEE-eCCeeec-HHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKLS-ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i~-p~eIE~~l~~~ 25 (87)
.|+|. ++|..|. ..++..+|...
T Consensus 70 GD~I~~ing~~v~~~~~~~~~l~~~ 94 (124)
T 1wh1_A 70 GDRIIQINGIEVQNREEAVALLTSE 94 (124)
T ss_dssp TCEEEEESSCBCCSHHHHHHHHTCS
T ss_pred CCEEEEECCEECCCHHHHHHHHHhC
Confidence 34444 6777763 45555555543
No 90
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=23.22 E-value=44 Score=19.50 Aligned_cols=16 Identities=6% Similarity=0.347 Sum_probs=13.1
Q ss_pred CeeecHHHHHHHHHhC
Q 046846 10 GYKLSALEIESVLLEK 25 (87)
Q Consensus 10 G~~i~p~eIE~~l~~~ 25 (87)
|.-|.|++|++++...
T Consensus 114 GV~VT~EqI~~~V~~~ 129 (187)
T 3tl4_X 114 GIEITEDQVRNYVMQY 129 (187)
T ss_dssp TCCCCHHHHHHHHHHH
T ss_pred CeEeCHHHHHHHHHHH
Confidence 7889999999887664
No 91
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=21.81 E-value=37 Score=17.44 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=35.0
Q ss_pred eecHHHHHHHHHhCCCc-------ccccCCCCCCCHHHHHHHHHhhCCCCCCCceE-EEecccCCCCCCcccHHHHHHHH
Q 046846 12 KLSALEIESVLLEKKAK-------RDQEKSKPVLSLQELCTWAKDKLAPYKLPTRL-FLWDSLPRNAMGKVNKKELKNQL 83 (87)
Q Consensus 12 ~i~p~eIE~~l~~~~~v-------~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i-~~v~~~p~t~~gKi~r~~l~~~~ 83 (87)
.|+..|+..++...... ......+..++..+....+...+........+ .....+-...+|.|.+..+...+
T Consensus 23 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l 102 (143)
T 3j04_B 23 FIDKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELL 102 (143)
T ss_dssp CCCHHHHHHHHHHTSCCCCHHHHHTTTTTSSSCCCHHHHHHHHHHTTTSSCCHHHHHHHHTTSCSSSCCCCCTTTHHHHH
T ss_pred CcCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCcHHHHHHHHHHHCCCCCCeEcHHHHHHHH
Confidence 56777777777664311 00011333456666665555433321111111 11134555666777666666655
Q ss_pred H
Q 046846 84 A 84 (87)
Q Consensus 84 ~ 84 (87)
.
T Consensus 103 ~ 103 (143)
T 3j04_B 103 T 103 (143)
T ss_dssp H
T ss_pred H
Confidence 3
No 92
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=21.69 E-value=41 Score=21.37 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=13.2
Q ss_pred EEeCCeeecHHHHHHHHHhCC
Q 046846 6 MKVGGYKLSALEIESVLLEKK 26 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~~ 26 (87)
-+++|+-+|..|||.+|.+-.
T Consensus 54 ~~iGgkGlFtkELe~aLl~g~ 74 (313)
T 1gtk_A 54 AKVGGKGLFVKELEVALLENR 74 (313)
T ss_dssp ------CTTHHHHHHHHHTTS
T ss_pred HHcCCccchHHHHHHHHHcCC
Confidence 368999999999999998753
No 93
>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3 3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3* 1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5 1vou_5 1vow_5 ...
Probab=21.06 E-value=18 Score=17.46 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=9.4
Q ss_pred cCCCCCCcccHHH
Q 046846 66 LPRNAMGKVNKKE 78 (87)
Q Consensus 66 ~p~t~~gKi~r~~ 78 (87)
|-.|.+||+.|..
T Consensus 14 Fk~TgsGKikr~~ 26 (66)
T 2zjr_3 14 IKITGTGKVMAFK 26 (66)
T ss_pred eEEcCCCcEEecc
Confidence 5568889887653
No 94
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=21.02 E-value=47 Score=21.58 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=12.3
Q ss_pred EEeCCeeecHHHHHHHHHhCC
Q 046846 6 MKVGGYKLSALEIESVLLEKK 26 (87)
Q Consensus 6 i~~~G~~i~p~eIE~~l~~~~ 26 (87)
-+++|+-+|..|||.+|..-.
T Consensus 72 ~~iGgKGlFtkELe~ALl~g~ 92 (364)
T 3ecr_A 72 SKIGEKSLFTKELEHALEKNE 92 (364)
T ss_dssp -------CCHHHHHHHHHTTS
T ss_pred HHcCCceeeHHHHHHHHhcCC
Confidence 357999999999999998754
No 95
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=20.86 E-value=92 Score=15.46 Aligned_cols=23 Identities=9% Similarity=0.342 Sum_probs=15.0
Q ss_pred cceE-EeCCeeec---HHHHHHHHHhC
Q 046846 3 ADIM-KVGGYKLS---ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i-~~~G~~i~---p~eIE~~l~~~ 25 (87)
.|.| .++|..|. ..++...+...
T Consensus 50 GD~I~~ing~~v~~~~~~~~~~~l~~~ 76 (103)
T 1v5l_A 50 GDVILAIDGFGTESMTHADAQDRIKAA 76 (103)
T ss_dssp TCBEEEETTEECSSCCHHHHHHHHTTC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 3444 47888886 47777777654
No 96
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=20.60 E-value=54 Score=18.49 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=20.5
Q ss_pred ccceEEeCCeeecHHHHHHHHHhCCC
Q 046846 2 SADIMKVGGYKLSALEIESVLLEKKA 27 (87)
Q Consensus 2 ~~d~i~~~G~~i~p~eIE~~l~~~~~ 27 (87)
+||+||+-|.-++..++...-.=.|.
T Consensus 54 ~KDIIKIe~~~l~~~e~~~LaliaP~ 79 (149)
T 2yww_A 54 KKDILKIEGIELKKEDVDKISLISPD 79 (149)
T ss_dssp EEEEEEEETCCCCHHHHHHHHHHCTT
T ss_pred cCCEEEECCcccChhhhheeEEECCC
Confidence 48999999999999888875554553
No 97
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=20.17 E-value=1.1e+02 Score=15.99 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=13.4
Q ss_pred cceEE-eCCeeec---HHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKLS---ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i~---p~eIE~~l~~~ 25 (87)
.|.|. ++|..|. ..++...|...
T Consensus 81 GD~Il~Vng~~v~~~~~~~~~~~l~~~ 107 (123)
T 2iwq_A 81 GDRIVEVDGMDLRDASHEQAVEAIRKA 107 (123)
T ss_dssp TCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 34443 6777775 36666666554
No 98
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=20.15 E-value=95 Score=15.33 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=13.3
Q ss_pred cceEE-eCCeeec---HHHHHHHHHhC
Q 046846 3 ADIMK-VGGYKLS---ALEIESVLLEK 25 (87)
Q Consensus 3 ~d~i~-~~G~~i~---p~eIE~~l~~~ 25 (87)
.|.|. ++|..|. ..++...+...
T Consensus 57 GD~I~~vng~~v~~~~~~~~~~~l~~~ 83 (100)
T 1whd_A 57 LDTVLQLNERPVEHWKCVELAHEIRSC 83 (100)
T ss_dssp SCEEEEETTEECTTCCHHHHHHHHHHC
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 34443 7777775 45666666544
Done!