BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046847
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9YGM4|CAMKV_TAKRU CaM kinase-like vesicle-associated protein OS=Takifugu rubripes
           GN=camkv PE=2 SV=1
          Length = 421

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 3   RKTFGLLFELLCSDERLKTDSVVFVDEQVCMFLHALA---HHVKNQTINNRFKHSGETIS 59
           R+ F  + +     ER  ++ +  V E V  +LH+L     ++KN    NR KHS   IS
Sbjct: 105 REVFDWILDQGYYSERDTSNVMRQVLEAVA-YLHSLKIVHRNLKNLVYFNRLKHSKIVIS 163

Query: 60  RFNSILNGVLELQHILLKSPKPMPEY 85
            F      + +L++ L+K P   PEY
Sbjct: 164 DFQ-----LAKLENGLIKDPCGTPEY 184


>sp|Q07E42|CFTR_DASNO Cystic fibrosis transmembrane conductance regulator OS=Dasypus
           novemcinctus GN=CFTR PE=3 SV=1
          Length = 1482

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 35  LHALAHHVKNQTINNRFKHSGE-TISRFNSILNGVLELQHILLKSPKPMP 83
           L   A H  N+T    FK +GE    R NSILN +  L+ I +    P+P
Sbjct: 671 LEGDAAHSWNETKKQSFKQTGEFGEKRKNSILNPINSLRRISITQKTPLP 720


>sp|Q6P5U7|K1239_MOUSE Leucine-rich repeat and WD repeat-containing protein KIAA1239
           OS=Mus musculus GN=Kiaa1239 PE=2 SV=2
          Length = 1742

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 26  FVDEQVCMFLHALAHHVKNQTINNRFKHSGETISRFNSILNGVLELQHILLKSPKPMPEY 85
           +  E+   FL +    ++N+ I      S E   R   +++ + +L+H+LL+  K  P+Y
Sbjct: 883 YSQEKELKFLASTLRSIRNKVIAFPGSLSAELQQRLLPVVSSLPKLRHLLLECDKDGPKY 942

Query: 86  CT 87
           C+
Sbjct: 943 CS 944


>sp|Q4R8R3|CC112_MACFA Coiled-coil domain-containing protein 112 OS=Macaca fascicularis
          GN=CCDC112 PE=2 SV=1
          Length = 446

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36 HALAHHVKNQTINNRFKHSGETISRFNSILNGVLELQHILLKSPKPMPEY 85
          H++   ++N+ IN+R     +   +   I N V +LQH  LK  KP P++
Sbjct: 20 HSMLEELENKLINSRKTERAKIQQQLAKIHNNVKKLQH-QLKDVKPTPDF 68


>sp|Q29RT4|CDCA2_BOVIN Cell division cycle-associated protein 2 OS=Bos taurus GN=CDCA2
           PE=2 SV=1
          Length = 1011

 Score = 29.6 bits (65), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 15  SDERLKTDSVVFVDEQVCMFLHALAHHVKNQTINNR----FKHSGETISRFNSIL 65
           SD R K   + F  E VC  L+A A   K +  N R     KH+ + + R N +L
Sbjct: 498 SDRRSKL--ISFSQESVCNLLNAEAQPCKEKKTNRRKSQESKHADKVLPRKNRVL 550


>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2)
            GN=rep PE=3 SV=1
          Length = 7152

 Score = 29.3 bits (64), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 16   DERLKTDSVVFVDEQVCMFLHA--LAHHVKNQTINNRFKHSGETISR-FNSILNGVLELQ 72
            D+ LKTDSV+ ++  V + + A  L HH +N+     F+   E I + +N + N +L+  
Sbjct: 5268 DDLLKTDSVLLIERFVSLAIDAYPLVHH-ENEEYQKVFRVYLEYIKKLYNDLGNQILDSY 5326

Query: 73   HILLKS 78
             ++L +
Sbjct: 5327 SVILST 5332


>sp|Q7V2A3|CLPB_PROMP Chaperone protein ClpB OS=Prochlorococcus marinus subsp. pastoris
           (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1
          Length = 860

 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 6   FGLLFELLCSDERLKTDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISRF 61
           +GL ++ +CS+  L T       +++  FL  L       TIN+ F+ S ET+ +F
Sbjct: 114 YGLSYDEICSELVLNT-------KKIPEFLELLNKMKSESTINDNFESSNETLDKF 162


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,107,303
Number of Sequences: 539616
Number of extensions: 1145557
Number of successful extensions: 3042
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3040
Number of HSP's gapped (non-prelim): 12
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)