Query 046847
Match_columns 88
No_of_seqs 118 out of 220
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j1v_A Chromosomal replication 95.2 0.015 5E-07 36.2 3.1 47 22-68 27-75 (94)
2 1jhg_A Trp operon repressor; c 94.9 0.019 6.5E-07 36.6 3.0 44 25-68 36-85 (101)
3 3pvv_A Chromosomal replication 94.2 0.051 1.7E-06 34.3 3.7 47 22-68 31-78 (101)
4 1tc3_C Protein (TC3 transposas 93.9 0.061 2.1E-06 27.4 3.2 38 24-62 5-43 (51)
5 3dv8_A Transcriptional regulat 92.3 0.1 3.6E-06 34.3 3.1 44 23-66 144-195 (220)
6 2jpc_A SSRB; DNA binding prote 92.2 0.18 6.1E-06 27.5 3.6 32 38-69 10-42 (61)
7 1fse_A GERE; helix-turn-helix 92.2 0.27 9.3E-06 27.4 4.4 45 23-69 10-55 (74)
8 2fmy_A COOA, carbon monoxide o 91.9 0.12 4.1E-06 34.2 3.0 43 23-65 135-192 (220)
9 2o8x_A Probable RNA polymerase 91.8 0.27 9.3E-06 27.1 4.1 45 25-70 16-61 (70)
10 3ryp_A Catabolite gene activat 91.8 0.14 4.9E-06 33.4 3.3 44 23-66 136-193 (210)
11 2oz6_A Virulence factor regula 91.2 0.18 6.3E-06 32.7 3.3 44 23-66 133-190 (207)
12 3c57_A Two component transcrip 91.0 0.31 1E-05 29.4 4.0 45 23-69 26-71 (95)
13 3iwz_A CAP-like, catabolite ac 90.7 0.24 8.2E-06 32.7 3.6 44 23-66 156-213 (230)
14 1x3u_A Transcriptional regulat 90.6 0.31 1.1E-05 27.7 3.5 43 25-69 17-60 (79)
15 3dkw_A DNR protein; CRP-FNR, H 90.5 0.25 8.5E-06 32.6 3.5 60 23-82 149-221 (227)
16 1je8_A Nitrate/nitrite respons 90.5 0.3 1E-05 28.7 3.6 45 23-69 20-65 (82)
17 1zyb_A Transcription regulator 90.2 0.31 1.1E-05 32.7 3.9 46 20-65 157-211 (232)
18 3frw_A Putative Trp repressor 90.1 0.31 1.1E-05 31.3 3.6 30 37-66 54-83 (107)
19 1ft9_A Carbon monoxide oxidati 90.1 0.24 8.2E-06 32.9 3.2 43 23-65 131-188 (222)
20 2zcw_A TTHA1359, transcription 90.0 0.3 1E-05 31.9 3.6 43 23-65 115-171 (202)
21 1o5l_A Transcriptional regulat 90.0 0.058 2E-06 35.9 0.0 60 23-82 139-207 (213)
22 1pdn_C Protein (PRD paired); p 89.8 0.37 1.3E-05 29.1 3.7 43 22-65 15-58 (128)
23 3la7_A Global nitrogen regulat 89.8 0.29 1E-05 33.1 3.5 59 23-81 161-235 (243)
24 4ev0_A Transcription regulator 89.8 0.25 8.5E-06 32.3 3.0 44 23-66 138-189 (216)
25 3b02_A Transcriptional regulat 89.5 0.26 9E-06 32.1 3.0 43 23-65 108-164 (195)
26 2x48_A CAG38821; archeal virus 89.3 0.27 9.1E-06 26.3 2.4 35 27-62 18-53 (55)
27 1u78_A TC3 transposase, transp 88.9 0.36 1.2E-05 29.9 3.2 40 23-63 5-45 (141)
28 2bgc_A PRFA; bacterial infecti 88.7 0.39 1.3E-05 32.3 3.5 43 23-65 136-195 (238)
29 3fx3_A Cyclic nucleotide-bindi 88.7 0.44 1.5E-05 31.7 3.7 45 21-65 148-203 (237)
30 2rnj_A Response regulator prot 88.6 0.37 1.3E-05 28.6 3.0 44 23-68 28-72 (91)
31 2p7v_B Sigma-70, RNA polymeras 88.6 0.47 1.6E-05 26.5 3.3 46 25-70 6-55 (68)
32 3kcc_A Catabolite gene activat 88.5 0.36 1.2E-05 33.1 3.2 44 23-66 186-243 (260)
33 1k78_A Paired box protein PAX5 88.4 0.46 1.6E-05 30.2 3.5 43 22-65 30-73 (149)
34 1tty_A Sigma-A, RNA polymerase 88.2 0.82 2.8E-05 26.9 4.3 45 25-69 19-67 (87)
35 3e97_A Transcriptional regulat 88.0 0.38 1.3E-05 31.9 3.0 42 25-66 145-201 (231)
36 3d0s_A Transcriptional regulat 88.0 0.42 1.4E-05 31.6 3.2 43 23-65 145-202 (227)
37 3e6c_C CPRK, cyclic nucleotide 87.9 0.41 1.4E-05 32.4 3.1 42 23-64 145-201 (250)
38 3hug_A RNA polymerase sigma fa 87.9 0.79 2.7E-05 27.1 4.1 45 25-70 38-83 (92)
39 2jrt_A Uncharacterized protein 86.6 1.1 3.7E-05 27.8 4.3 44 21-64 29-73 (95)
40 1ku3_A Sigma factor SIGA; heli 86.4 1.2 4E-05 25.2 4.1 46 24-69 10-59 (73)
41 1iuf_A Centromere ABP1 protein 86.3 0.56 1.9E-05 30.4 3.0 42 22-63 9-59 (144)
42 2gau_A Transcriptional regulat 85.9 0.72 2.5E-05 30.5 3.5 43 23-65 149-205 (232)
43 3kor_A Possible Trp repressor; 85.9 0.47 1.6E-05 31.0 2.4 31 36-66 70-100 (119)
44 1s7o_A Hypothetical UPF0122 pr 85.9 1 3.5E-05 28.3 4.0 45 25-70 23-68 (113)
45 1jko_C HIN recombinase, DNA-in 85.8 0.58 2E-05 23.9 2.4 25 38-62 18-43 (52)
46 2jn6_A Protein CGL2762, transp 85.5 0.86 3E-05 27.1 3.4 41 24-64 5-47 (97)
47 2oa4_A SIR5; structure, struct 85.4 1.5 5E-05 27.7 4.5 50 16-65 23-75 (101)
48 1xsv_A Hypothetical UPF0122 pr 84.3 1.5 5.3E-05 27.3 4.3 45 25-70 26-71 (113)
49 1l8q_A Chromosomal replication 84.2 1.4 4.7E-05 31.2 4.4 46 20-65 252-299 (324)
50 2k27_A Paired box protein PAX- 84.2 0.79 2.7E-05 29.5 3.0 40 23-63 24-64 (159)
51 3ulq_B Transcriptional regulat 83.7 1.3 4.5E-05 26.5 3.7 45 23-69 28-73 (90)
52 2lkp_A Transcriptional regulat 83.7 2.8 9.5E-05 25.4 5.2 39 28-66 32-71 (119)
53 1p4w_A RCSB; solution structur 83.6 1.9 6.3E-05 26.5 4.4 46 22-69 32-78 (99)
54 2l0k_A Stage III sporulation p 83.4 0.72 2.5E-05 28.5 2.4 29 35-63 14-43 (93)
55 2glo_A Brinker CG9653-PA; prot 82.6 1 3.5E-05 24.7 2.6 39 24-63 5-48 (59)
56 3kjx_A Transcriptional regulat 82.3 0.6 2E-05 33.0 1.9 31 42-72 11-53 (344)
57 3t72_q RNA polymerase sigma fa 82.3 2 6.9E-05 26.5 4.1 47 24-70 19-69 (99)
58 1hlv_A CENP-B, major centromer 82.0 1.2 4.2E-05 27.5 3.1 41 23-63 6-48 (131)
59 3cuo_A Uncharacterized HTH-typ 79.3 1.6 5.6E-05 25.3 2.9 37 29-65 25-63 (99)
60 3dn7_A Cyclic nucleotide bindi 78.8 0.4 1.4E-05 30.9 0.0 42 23-64 147-192 (194)
61 2lfw_A PHYR sigma-like domain; 78.3 2.4 8.2E-05 27.1 3.7 60 23-83 92-153 (157)
62 2d1h_A ST1889, 109AA long hypo 77.9 2.7 9.2E-05 24.4 3.5 27 39-65 34-61 (109)
63 1rp3_A RNA polymerase sigma fa 77.8 3.5 0.00012 27.1 4.5 45 25-70 188-233 (239)
64 2p5k_A Arginine repressor; DNA 77.7 2.4 8.4E-05 22.8 3.1 34 29-62 5-46 (64)
65 1qpz_A PURA, protein (purine n 77.2 1.2 4.1E-05 31.3 2.1 30 43-72 2-43 (340)
66 1ku9_A Hypothetical protein MJ 76.4 7 0.00024 23.6 5.3 39 27-65 27-66 (152)
67 1u78_A TC3 transposase, transp 74.9 11 0.00037 22.9 6.0 40 24-63 60-102 (141)
68 1y0u_A Arsenical resistance op 74.9 2.6 9E-05 24.8 2.9 36 30-66 33-69 (96)
69 2elh_A CG11849-PA, LD40883P; s 74.8 2.9 9.8E-05 24.6 3.1 40 24-64 22-62 (87)
70 3h5t_A Transcriptional regulat 74.8 1.9 6.6E-05 30.5 2.7 32 41-72 9-52 (366)
71 3mzy_A RNA polymerase sigma-H 74.5 5.6 0.00019 24.4 4.6 37 33-70 117-154 (164)
72 2w7n_A TRFB transcriptional re 74.2 5 0.00017 25.1 4.2 32 38-69 31-63 (101)
73 3r0a_A Putative transcriptiona 74.0 3.9 0.00013 25.5 3.7 50 11-65 16-67 (123)
74 2jt1_A PEFI protein; solution 73.2 3.4 0.00012 24.4 3.1 26 39-64 22-48 (77)
75 1or7_A Sigma-24, RNA polymeras 73.2 6 0.00021 25.3 4.6 42 29-71 145-187 (194)
76 2kko_A Possible transcriptiona 73.1 3.2 0.00011 25.2 3.0 29 37-65 34-63 (108)
77 3jvd_A Transcriptional regulat 72.6 0.74 2.5E-05 32.5 0.0 22 41-62 6-28 (333)
78 3qp6_A CVIR transcriptional re 72.4 11 0.00037 26.4 6.1 45 23-69 196-241 (265)
79 3kp7_A Transcriptional regulat 71.8 5.9 0.0002 24.5 4.2 52 25-83 36-91 (151)
80 3jth_A Transcription activator 71.7 3 0.0001 24.5 2.6 37 29-65 24-61 (98)
81 3nrv_A Putative transcriptiona 71.7 13 0.00043 22.7 5.7 59 7-66 18-80 (148)
82 2x4h_A Hypothetical protein SS 71.5 4.4 0.00015 25.0 3.5 38 28-65 15-56 (139)
83 3pqk_A Biofilm growth-associat 71.5 4.8 0.00016 23.8 3.5 37 29-65 24-61 (102)
84 1r1u_A CZRA, repressor protein 70.8 3.9 0.00013 24.5 3.1 55 2-65 9-64 (106)
85 3f6o_A Probable transcriptiona 70.7 4 0.00014 25.0 3.1 38 28-65 18-56 (118)
86 2htj_A P fimbrial regulatory p 70.3 5.1 0.00017 22.9 3.4 26 40-65 13-39 (81)
87 1zx4_A P1 PARB, plasmid partit 69.5 4.7 0.00016 27.9 3.6 26 38-63 21-47 (192)
88 2oqg_A Possible transcriptiona 69.1 4.9 0.00017 23.9 3.2 35 31-65 24-59 (114)
89 2q0o_A Probable transcriptiona 68.3 16 0.00054 24.7 6.1 46 22-69 173-219 (236)
90 2hsg_A Glucose-resistance amyl 67.2 1.6 5.6E-05 30.4 0.8 31 42-72 3-45 (332)
91 2gxg_A 146AA long hypothetical 67.2 18 0.00061 21.8 5.7 39 25-65 35-75 (146)
92 3h5o_A Transcriptional regulat 67.2 1.1 3.9E-05 31.4 0.0 24 40-63 3-27 (339)
93 1q1h_A TFE, transcription fact 67.1 7.6 0.00026 23.2 3.8 31 35-65 27-58 (110)
94 3szt_A QCSR, quorum-sensing co 66.8 10 0.00035 25.9 4.9 46 21-68 172-218 (237)
95 1ub9_A Hypothetical protein PH 66.2 5 0.00017 23.0 2.8 39 28-66 16-56 (100)
96 1l3l_A Transcriptional activat 66.1 13 0.00045 25.1 5.3 46 22-69 171-217 (234)
97 1u2w_A CADC repressor, cadmium 65.9 5.1 0.00018 24.7 2.9 36 30-65 44-81 (122)
98 2rn7_A IS629 ORFA; helix, all 65.6 3.9 0.00013 24.5 2.3 42 24-65 6-55 (108)
99 1xn7_A Hypothetical protein YH 65.6 3.4 0.00012 24.5 1.9 25 40-64 15-40 (78)
100 3eco_A MEPR; mutlidrug efflux 65.4 19 0.00067 21.6 5.6 36 30-65 35-72 (139)
101 1r1t_A Transcriptional repress 65.4 5.6 0.00019 24.8 3.1 37 30-66 48-85 (122)
102 1on2_A Transcriptional regulat 65.1 6.7 0.00023 24.2 3.4 38 28-65 7-47 (142)
103 2pij_A Prophage PFL 6 CRO; tra 64.9 4.2 0.00014 22.0 2.1 29 33-62 6-35 (67)
104 2heo_A Z-DNA binding protein 1 64.3 8 0.00027 21.7 3.3 39 27-65 11-50 (67)
105 3clo_A Transcriptional regulat 64.2 7.3 0.00025 26.9 3.7 45 23-69 196-241 (258)
106 2q1z_A RPOE, ECF SIGE; ECF sig 63.8 7.6 0.00026 24.6 3.5 44 25-69 136-180 (184)
107 1uxc_A FRUR (1-57), fructose r 63.3 2.8 9.7E-05 23.8 1.2 20 43-62 2-22 (65)
108 2w48_A Sorbitol operon regulat 63.2 4.6 0.00016 29.0 2.6 25 40-64 20-45 (315)
109 2o20_A Catabolite control prot 62.9 1.5 5.3E-05 30.6 0.0 22 42-63 6-28 (332)
110 2jsc_A Transcriptional regulat 62.7 6.4 0.00022 24.1 2.9 35 30-64 23-58 (118)
111 3ctp_A Periplasmic binding pro 62.6 1.6 5.4E-05 30.6 0.0 22 42-63 3-25 (330)
112 2nnn_A Probable transcriptiona 62.1 14 0.00048 22.1 4.4 41 24-65 35-77 (140)
113 3fm5_A Transcriptional regulat 61.2 23 0.00078 21.7 5.4 31 35-65 48-79 (150)
114 3f6v_A Possible transcriptiona 61.1 7.5 0.00026 25.3 3.1 38 28-65 58-96 (151)
115 3bil_A Probable LACI-family tr 61.1 1.7 5.9E-05 30.8 0.0 22 42-63 9-31 (348)
116 1a04_A Nitrate/nitrite respons 60.8 6.8 0.00023 25.3 2.9 36 34-69 162-198 (215)
117 1p6r_A Penicillinase repressor 60.8 8.6 0.0003 21.7 3.1 39 26-65 9-52 (82)
118 2qvo_A Uncharacterized protein 60.8 9.1 0.00031 22.3 3.3 24 42-65 31-55 (95)
119 2bv6_A MGRA, HTH-type transcri 60.3 13 0.00045 22.5 4.1 26 40-65 50-76 (142)
120 1jye_A Lactose operon represso 59.9 1.9 6.4E-05 30.5 0.0 22 42-63 4-26 (349)
121 3dbi_A Sugar-binding transcrip 59.4 1.9 6.6E-05 30.1 0.0 22 42-63 4-26 (338)
122 3tgn_A ADC operon repressor AD 59.1 10 0.00035 23.0 3.4 41 24-65 35-76 (146)
123 2zkz_A Transcriptional repress 59.0 8.2 0.00028 22.9 2.9 40 28-67 27-68 (99)
124 3bja_A Transcriptional regulat 58.7 17 0.00057 21.7 4.3 26 40-65 46-72 (139)
125 2fbi_A Probable transcriptiona 58.5 13 0.00045 22.3 3.8 40 25-65 34-75 (142)
126 3deu_A Transcriptional regulat 58.5 28 0.00097 22.0 5.6 42 24-65 50-93 (166)
127 1sfx_A Conserved hypothetical 58.2 15 0.00051 20.9 3.9 53 6-65 6-59 (109)
128 3bpv_A Transcriptional regulat 58.1 15 0.00051 22.0 4.0 27 39-65 41-68 (138)
129 3e3m_A Transcriptional regulat 58.1 2.1 7.2E-05 30.3 0.0 22 42-63 13-35 (355)
130 2k02_A Ferrous iron transport 58.0 4.9 0.00017 24.4 1.7 25 40-64 15-40 (87)
131 3f3x_A Transcriptional regulat 57.8 11 0.00037 23.0 3.3 41 25-66 35-76 (144)
132 1z91_A Organic hydroperoxide r 57.5 14 0.00047 22.5 3.8 42 24-66 37-80 (147)
133 3ech_A MEXR, multidrug resista 57.5 16 0.00055 22.2 4.1 40 25-65 35-76 (142)
134 1b4a_A Arginine repressor; hel 57.2 7 0.00024 25.8 2.5 23 42-64 20-48 (149)
135 1l9z_H Sigma factor SIGA; heli 56.3 13 0.00044 28.6 4.1 44 26-69 377-424 (438)
136 3oou_A LIN2118 protein; protei 55.6 15 0.0005 21.8 3.6 27 38-64 18-45 (108)
137 2l8n_A Transcriptional repress 55.1 3 0.0001 23.9 0.3 22 42-63 10-32 (67)
138 3k0l_A Repressor protein; heli 54.8 22 0.00074 22.2 4.5 26 40-65 59-85 (162)
139 2fu4_A Ferric uptake regulatio 54.8 18 0.00063 20.3 3.8 36 29-64 18-62 (83)
140 2a6h_F RNA polymerase sigma fa 54.7 12 0.0004 28.3 3.7 43 27-69 363-409 (423)
141 3c3w_A Two component transcrip 54.4 7.8 0.00027 25.5 2.4 34 35-68 158-192 (225)
142 3mn2_A Probable ARAC family tr 54.4 14 0.00049 21.7 3.4 26 39-64 16-42 (108)
143 3bro_A Transcriptional regulat 53.9 17 0.00058 21.8 3.8 41 25-65 32-75 (141)
144 1fx7_A Iron-dependent represso 53.9 12 0.0004 25.5 3.3 40 26-65 6-49 (230)
145 4hbl_A Transcriptional regulat 53.5 18 0.00062 22.2 3.9 27 39-65 53-80 (149)
146 3bdd_A Regulatory protein MARR 53.1 19 0.00065 21.5 3.9 27 40-66 44-71 (142)
147 1lj9_A Transcriptional regulat 53.1 15 0.00051 22.2 3.4 26 40-65 42-68 (144)
148 2rdp_A Putative transcriptiona 52.8 19 0.00064 21.9 3.9 26 40-65 55-81 (150)
149 2a61_A Transcriptional regulat 52.6 19 0.00066 21.6 3.9 27 39-65 45-72 (145)
150 2pg4_A Uncharacterized protein 52.2 14 0.00048 21.4 3.1 25 41-65 30-56 (95)
151 3fzv_A Probable transcriptiona 52.0 14 0.00047 24.6 3.4 39 29-68 7-46 (306)
152 4aik_A Transcriptional regulat 52.0 14 0.00048 23.3 3.2 41 25-65 29-71 (151)
153 2fbh_A Transcriptional regulat 51.9 36 0.0012 20.3 5.9 28 38-65 49-77 (146)
154 2pex_A Transcriptional regulat 51.9 18 0.00063 22.1 3.8 27 39-65 59-86 (153)
155 2eth_A Transcriptional regulat 51.8 20 0.00067 22.1 3.9 25 41-65 58-83 (154)
156 3cjn_A Transcriptional regulat 51.8 18 0.00063 22.4 3.8 27 39-65 64-91 (162)
157 1l0o_C Sigma factor; bergerat 51.6 3.1 0.00011 27.3 0.0 42 25-67 199-241 (243)
158 2h09_A Transcriptional regulat 51.3 16 0.00053 22.9 3.4 27 39-65 52-79 (155)
159 2fa5_A Transcriptional regulat 50.9 21 0.00072 22.0 3.9 27 39-65 61-88 (162)
160 1oyi_A Double-stranded RNA-bin 50.9 15 0.0005 22.1 3.0 38 26-65 17-55 (82)
161 2hr3_A Probable transcriptiona 50.8 38 0.0013 20.3 6.3 27 39-65 48-75 (147)
162 1okr_A MECI, methicillin resis 50.7 17 0.00059 21.6 3.4 37 28-65 12-53 (123)
163 2k9s_A Arabinose operon regula 50.6 18 0.00061 21.3 3.4 24 41-64 20-44 (107)
164 2ek5_A Predicted transcription 50.2 20 0.00067 22.5 3.7 21 43-63 30-51 (129)
165 3oop_A LIN2960 protein; protei 50.2 20 0.00068 21.7 3.7 41 24-65 34-76 (143)
166 1yio_A Response regulatory pro 50.0 12 0.0004 23.9 2.7 34 35-68 151-185 (208)
167 1jgs_A Multiple antibiotic res 50.0 23 0.00077 21.2 3.9 26 40-65 47-73 (138)
168 3u2r_A Regulatory protein MARR 49.9 19 0.00066 22.6 3.7 41 25-65 44-87 (168)
169 3bj6_A Transcriptional regulat 49.8 21 0.00071 21.7 3.7 26 40-65 53-79 (152)
170 1tbx_A ORF F-93, hypothetical 49.1 27 0.00092 20.1 4.0 27 40-66 21-52 (99)
171 3boq_A Transcriptional regulat 48.8 23 0.0008 21.7 3.9 28 38-65 59-87 (160)
172 2gqq_A Leucine-responsive regu 48.8 18 0.0006 23.2 3.4 38 27-65 14-52 (163)
173 2cob_A LCOR protein; MLR2, KIA 48.7 19 0.00063 21.3 3.1 39 26-64 14-54 (70)
174 1s3j_A YUSO protein; structura 48.5 19 0.00066 21.9 3.4 26 40-65 50-76 (155)
175 3iyd_F RNA polymerase sigma fa 48.4 13 0.00046 29.3 3.2 45 24-68 550-598 (613)
176 2frh_A SARA, staphylococcal ac 47.7 20 0.0007 21.7 3.4 37 29-65 40-78 (127)
177 1qgp_A Protein (double strande 47.4 28 0.00097 20.0 3.9 38 28-65 16-56 (77)
178 3jw4_A Transcriptional regulat 47.3 25 0.00087 21.4 3.9 41 25-65 39-82 (148)
179 3cta_A Riboflavin kinase; stru 46.9 13 0.00045 25.2 2.6 41 26-66 5-53 (230)
180 3g3z_A NMB1585, transcriptiona 46.7 27 0.00092 21.1 3.9 32 33-65 38-70 (145)
181 1v4r_A Transcriptional repress 46.5 6.6 0.00023 23.3 0.9 22 43-64 37-59 (102)
182 2qww_A Transcriptional regulat 46.3 25 0.00086 21.4 3.7 40 25-65 39-80 (154)
183 2z4s_A Chromosomal replication 46.1 4.3 0.00015 30.5 0.0 45 22-66 368-413 (440)
184 3lsg_A Two-component response 46.0 28 0.00095 20.2 3.7 24 41-64 19-43 (103)
185 3e6m_A MARR family transcripti 45.3 24 0.00084 21.9 3.6 34 31-65 58-92 (161)
186 2g9w_A Conserved hypothetical 44.5 20 0.0007 22.2 3.1 39 27-65 10-53 (138)
187 1j5y_A Transcriptional regulat 44.4 25 0.00085 23.1 3.7 27 40-66 35-62 (187)
188 2b0l_A GTP-sensing transcripti 44.0 6.1 0.00021 24.1 0.5 22 43-64 45-67 (102)
189 4ham_A LMO2241 protein; struct 43.4 21 0.00073 22.2 3.1 42 23-64 11-62 (134)
190 2fbk_A Transcriptional regulat 43.3 33 0.0011 21.8 4.1 37 29-65 72-111 (181)
191 1qbj_A Protein (double-strande 42.3 38 0.0013 19.9 3.9 39 27-65 11-52 (81)
192 3oio_A Transcriptional regulat 42.2 19 0.00064 21.4 2.6 24 41-64 23-47 (113)
193 1ixc_A CBNR, LYSR-type regulat 42.0 19 0.00065 23.8 2.8 39 29-68 4-43 (294)
194 1mkm_A ICLR transcriptional re 41.9 27 0.00092 23.9 3.6 39 26-64 6-47 (249)
195 2qq9_A Diphtheria toxin repres 41.8 19 0.00067 24.4 2.9 40 26-65 6-49 (226)
196 3s2w_A Transcriptional regulat 41.7 25 0.00086 21.7 3.2 26 40-65 63-89 (159)
197 3hsr_A HTH-type transcriptiona 41.7 19 0.00065 21.9 2.6 27 39-65 48-75 (140)
198 2nyx_A Probable transcriptiona 41.4 31 0.0011 21.6 3.7 41 24-65 42-84 (168)
199 1i1g_A Transcriptional regulat 41.2 17 0.00057 22.4 2.3 28 39-66 16-44 (141)
200 4fx0_A Probable transcriptiona 41.1 19 0.00063 22.7 2.5 36 41-82 52-88 (148)
201 1sd4_A Penicillinase repressor 41.1 25 0.00087 20.9 3.1 38 27-65 11-53 (126)
202 3hhg_A Transcriptional regulat 40.6 24 0.00081 23.5 3.1 39 29-68 6-45 (306)
203 2xi8_A Putative transcription 40.5 12 0.00042 19.4 1.4 26 37-62 10-36 (66)
204 3klo_A Transcriptional regulat 40.2 13 0.00046 24.2 1.8 32 35-66 168-200 (225)
205 2cyy_A Putative HTH-type trans 40.2 33 0.0011 21.5 3.6 27 40-66 20-47 (151)
206 2dbb_A Putative HTH-type trans 39.9 19 0.00065 22.5 2.4 28 39-66 21-49 (151)
207 3cdh_A Transcriptional regulat 39.6 33 0.0011 20.9 3.5 26 40-65 56-82 (155)
208 1lmb_3 Protein (lambda repress 39.4 19 0.00064 20.3 2.2 35 28-62 15-52 (92)
209 1vz0_A PARB, chromosome partit 39.1 27 0.00092 24.2 3.3 36 25-60 118-153 (230)
210 2cfx_A HTH-type transcriptiona 38.5 33 0.0011 21.3 3.4 27 40-66 18-45 (144)
211 2di3_A Bacterial regulatory pr 38.4 40 0.0014 22.6 4.1 16 45-60 32-47 (239)
212 3p7n_A Sensor histidine kinase 38.4 30 0.001 22.7 3.3 36 33-68 205-241 (258)
213 2o3f_A Putative HTH-type trans 38.3 19 0.00066 22.1 2.2 37 26-64 21-63 (111)
214 3nqo_A MARR-family transcripti 38.2 33 0.0011 22.2 3.5 41 25-65 39-82 (189)
215 1r69_A Repressor protein CI; g 37.5 15 0.0005 19.4 1.4 24 37-60 10-33 (69)
216 1bl0_A Protein (multiple antib 37.5 30 0.001 21.1 3.1 25 40-64 26-51 (129)
217 2dk5_A DNA-directed RNA polyme 37.4 51 0.0018 19.6 4.0 48 23-77 16-67 (91)
218 1zug_A Phage 434 CRO protein; 36.3 16 0.00053 19.4 1.4 25 38-62 13-38 (71)
219 2ijl_A AGR_C_4647P, molybdenum 36.2 30 0.001 22.2 2.9 37 29-66 27-64 (135)
220 1r71_A Transcriptional repress 35.6 29 0.001 23.3 2.9 34 26-60 38-71 (178)
221 3mkl_A HTH-type transcriptiona 35.6 29 0.001 20.8 2.7 12 5-16 8-19 (120)
222 3tqn_A Transcriptional regulat 35.5 14 0.00048 22.5 1.2 22 43-64 35-57 (113)
223 4dyq_A Gene 1 protein; GP1, oc 35.2 30 0.001 21.9 2.8 36 28-63 15-52 (140)
224 2cg4_A Regulatory protein ASNC 35.2 23 0.00079 22.2 2.3 27 40-66 21-48 (152)
225 3df8_A Possible HXLR family tr 35.0 39 0.0013 20.3 3.2 27 39-65 38-68 (111)
226 3fxq_A LYSR type regulator of 34.9 30 0.001 23.2 2.9 39 29-68 5-44 (305)
227 3o9x_A Uncharacterized HTH-typ 34.4 19 0.00066 22.0 1.8 25 36-60 79-103 (133)
228 2pn6_A ST1022, 150AA long hypo 34.3 19 0.00066 22.4 1.8 26 41-66 17-43 (150)
229 1c9b_A General transcription f 34.2 26 0.00089 23.2 2.5 41 38-78 156-197 (207)
230 3fmy_A HTH-type transcriptiona 34.2 21 0.00073 19.7 1.8 25 36-60 19-43 (73)
231 2r1j_L Repressor protein C2; p 33.8 15 0.00052 19.2 1.0 25 38-62 15-40 (68)
232 3neu_A LIN1836 protein; struct 33.7 21 0.00071 22.1 1.8 22 43-64 39-61 (125)
233 3hrs_A Metalloregulator SCAR; 33.3 36 0.0012 22.9 3.1 38 28-65 4-45 (214)
234 2p5v_A Transcriptional regulat 33.0 40 0.0014 21.3 3.2 27 40-66 23-50 (162)
235 1y7y_A C.AHDI; helix-turn-heli 32.6 19 0.00066 19.1 1.4 26 37-62 22-48 (74)
236 4a0z_A Transcription factor FA 32.5 36 0.0012 22.9 3.0 41 24-64 7-50 (190)
237 3b7h_A Prophage LP1 protein 11 32.4 19 0.00066 19.4 1.4 23 38-60 17-39 (78)
238 1ku1_A ARF guanine-nucleotide 32.4 98 0.0034 21.7 5.3 39 11-53 43-81 (230)
239 2b5a_A C.BCLI; helix-turn-heli 32.3 20 0.00067 19.3 1.4 26 37-62 19-45 (77)
240 3by6_A Predicted transcription 32.3 18 0.00063 22.5 1.4 22 43-64 37-59 (126)
241 3ic7_A Putative transcriptiona 32.2 20 0.00069 22.3 1.6 22 43-64 37-59 (126)
242 2w25_A Probable transcriptiona 32.2 41 0.0014 20.9 3.1 27 40-66 20-47 (150)
243 2a6c_A Helix-turn-helix motif; 31.8 19 0.00065 20.3 1.3 26 37-62 27-53 (83)
244 2esn_A Probable transcriptiona 31.5 21 0.00073 23.9 1.7 37 29-66 13-50 (310)
245 1adr_A P22 C2 repressor; trans 31.3 18 0.0006 19.4 1.0 25 38-62 15-40 (76)
246 2k4b_A Transcriptional regulat 31.0 43 0.0015 20.2 2.9 38 27-65 36-78 (99)
247 1rzs_A Antirepressor, regulato 31.0 14 0.00047 20.2 0.5 21 41-61 10-31 (61)
248 2wiu_B HTH-type transcriptiona 31.0 25 0.00085 19.5 1.7 26 37-62 21-47 (88)
249 1z7u_A Hypothetical protein EF 31.0 64 0.0022 19.1 3.7 26 40-65 34-61 (112)
250 2fxa_A Protease production reg 30.8 63 0.0022 21.4 4.0 40 25-65 46-87 (207)
251 1bia_A BIRA bifunctional prote 30.6 37 0.0013 24.4 2.9 26 41-66 19-45 (321)
252 1p2f_A Response regulator; DRR 30.2 37 0.0013 21.7 2.7 35 35-69 154-196 (220)
253 2jui_A PLNE; ampiphilic alpha 30.1 36 0.0012 16.9 2.0 23 51-73 1-24 (33)
254 1ztd_A Hypothetical protein PF 30.0 63 0.0021 21.0 3.6 42 25-72 86-129 (133)
255 2p8t_A Hypothetical protein PH 29.7 45 0.0015 23.1 3.1 38 27-64 16-54 (200)
256 2hin_A GP39, repressor protein 29.7 39 0.0013 19.4 2.4 21 43-63 12-33 (71)
257 3bs3_A Putative DNA-binding pr 29.6 23 0.00079 19.0 1.4 26 37-62 19-45 (76)
258 3f8m_A GNTR-family protein tra 29.6 31 0.0011 23.8 2.3 29 36-64 30-60 (248)
259 2hzt_A Putative HTH-type trans 29.6 55 0.0019 19.3 3.2 27 39-65 25-53 (107)
260 3isp_A HTH-type transcriptiona 29.5 26 0.00089 23.4 1.9 39 29-68 9-48 (303)
261 4fe7_A Xylose operon regulator 29.2 79 0.0027 22.7 4.5 28 37-64 317-345 (412)
262 2k9q_A Uncharacterized protein 29.2 20 0.00068 19.6 1.0 24 37-60 11-34 (77)
263 1o57_A PUR operon repressor; p 29.1 89 0.003 22.3 4.8 43 28-70 7-53 (291)
264 3omt_A Uncharacterized protein 29.0 22 0.00075 19.2 1.2 26 38-63 18-44 (73)
265 3szp_A Transcriptional regulat 28.9 26 0.00087 22.9 1.7 35 30-65 5-40 (291)
266 3u1d_A Uncharacterized protein 28.6 59 0.002 21.5 3.5 40 27-66 28-72 (151)
267 2xrn_A HTH-type transcriptiona 28.5 54 0.0019 22.3 3.4 39 26-64 4-45 (241)
268 3qq6_A HTH-type transcriptiona 28.3 25 0.00085 19.6 1.4 28 36-63 18-46 (78)
269 3iwf_A Transcription regulator 28.1 43 0.0015 20.4 2.6 39 26-64 17-59 (107)
270 3hot_A Transposable element ma 28.1 49 0.0017 23.1 3.2 37 29-65 10-54 (345)
271 2p4w_A Transcriptional regulat 28.0 44 0.0015 22.6 2.8 37 29-65 16-53 (202)
272 2b19_A Neuropeptide K, NPK; he 27.9 33 0.0011 17.4 1.6 18 25-42 4-21 (36)
273 2hqr_A Putative transcriptiona 27.8 51 0.0018 21.1 3.0 36 35-70 152-197 (223)
274 3k2z_A LEXA repressor; winged 27.6 63 0.0022 21.2 3.5 26 39-64 22-48 (196)
275 2fe3_A Peroxide operon regulat 27.5 1.2E+02 0.004 19.0 5.0 63 3-69 3-67 (145)
276 2v79_A DNA replication protein 27.1 80 0.0027 20.0 3.8 24 42-65 52-76 (135)
277 2e1c_A Putative HTH-type trans 26.7 28 0.00095 22.7 1.6 27 40-66 40-67 (171)
278 2qlz_A Transcription factor PF 26.6 36 0.0012 23.8 2.2 35 32-66 16-51 (232)
279 3eus_A DNA-binding protein; st 26.5 30 0.001 19.6 1.5 24 37-60 23-46 (86)
280 2o5h_A Hypothetical protein; a 26.4 54 0.0019 21.6 2.9 35 3-37 52-91 (136)
281 2ict_A Antitoxin HIGA; helix-t 26.4 28 0.00097 19.8 1.4 36 26-63 8-44 (94)
282 3bd1_A CRO protein; transcript 26.3 28 0.00095 19.2 1.3 23 40-63 11-34 (79)
283 2kpj_A SOS-response transcript 26.1 29 0.00099 19.8 1.4 22 39-60 20-41 (94)
284 3kz3_A Repressor protein CI; f 26.1 26 0.0009 19.3 1.2 25 38-62 22-47 (80)
285 2ewt_A BLDD, putative DNA-bind 25.9 32 0.0011 18.1 1.5 24 39-62 19-45 (71)
286 1al3_A Cys regulon transcripti 25.9 14 0.00049 25.3 0.0 39 30-68 5-44 (324)
287 2ef8_A C.ECOT38IS, putative tr 25.8 29 0.001 18.9 1.4 23 38-60 20-42 (84)
288 2g7u_A Transcriptional regulat 25.4 54 0.0018 22.5 2.9 39 26-64 12-53 (257)
289 4b8x_A SCO5413, possible MARR- 25.3 80 0.0027 19.4 3.5 41 25-65 33-76 (147)
290 3s8q_A R-M controller protein; 25.2 31 0.001 19.0 1.4 24 37-60 20-43 (82)
291 3i4p_A Transcriptional regulat 25.2 31 0.0011 22.0 1.6 26 41-66 17-43 (162)
292 1ais_B TFB TFIIB, protein (tra 25.1 1.4E+02 0.0049 19.3 6.2 48 22-69 46-98 (200)
293 3u0j_B Type III effector HOPU1 25.0 1.1E+02 0.0038 22.3 4.6 51 22-72 84-159 (270)
294 1uly_A Hypothetical protein PH 24.9 68 0.0023 21.3 3.3 35 30-66 24-59 (192)
295 2ia0_A Putative HTH-type trans 24.8 75 0.0026 20.5 3.4 38 28-66 19-57 (171)
296 1wls_A L-asparaginase; structu 24.7 46 0.0016 24.4 2.6 37 18-54 283-319 (328)
297 2g7r_A Mucosa-associated lymph 24.7 1E+02 0.0035 19.8 3.9 41 39-79 75-116 (117)
298 1ys7_A Transcriptional regulat 24.6 59 0.002 20.8 2.9 36 34-69 167-212 (233)
299 1p4x_A Staphylococcal accessor 24.5 1.5E+02 0.0053 20.4 5.2 36 30-65 162-199 (250)
300 3gm3_A Protein tyrosine kinase 24.5 68 0.0023 21.5 3.2 32 49-80 15-47 (153)
301 4g6q_A Putative uncharacterize 24.3 74 0.0025 20.9 3.4 38 30-67 25-64 (182)
302 3f6w_A XRE-family like protein 24.2 28 0.00095 19.1 1.0 24 37-60 23-46 (83)
303 2ppx_A AGR_C_3184P, uncharacte 24.1 32 0.0011 19.9 1.4 25 36-60 38-62 (99)
304 2ia2_A Putative transcriptiona 24.1 55 0.0019 22.6 2.8 39 26-64 19-60 (265)
305 2vn2_A DNAD, chromosome replic 23.9 88 0.003 19.2 3.5 24 42-65 52-76 (128)
306 2l49_A C protein; P2 bacteriop 23.9 33 0.0011 19.5 1.4 26 37-62 13-39 (99)
307 3uj3_X DNA-invertase; helix-tu 23.9 17 0.00057 23.9 0.0 25 39-63 156-181 (193)
308 1xmk_A Double-stranded RNA-spe 23.5 93 0.0032 18.2 3.4 37 26-63 11-49 (79)
309 1v54_D Cytochrome C oxidase su 23.1 55 0.0019 21.7 2.5 35 10-47 37-71 (147)
310 2o0m_A Transcriptional regulat 23.1 17 0.0006 26.3 0.0 34 30-64 24-58 (345)
311 2f2e_A PA1607; transcription f 22.8 78 0.0027 19.9 3.1 27 39-65 35-62 (146)
312 3cec_A Putative antidote prote 22.8 30 0.001 20.1 1.0 36 25-62 17-53 (104)
313 1o7f_A CAMP-dependent RAP1 gua 22.6 86 0.0029 22.7 3.7 47 23-69 190-254 (469)
314 1b9m_A Protein (mode); DNA-bin 22.4 85 0.0029 21.1 3.5 41 28-69 22-63 (265)
315 2him_A L-asparaginase 1; hydro 22.4 55 0.0019 24.3 2.6 37 18-54 313-349 (358)
316 1u8b_A ADA polyprotein; protei 22.3 47 0.0016 20.2 1.9 27 39-65 91-118 (133)
317 2cw1_A SN4M; lambda CRO fold, 22.1 54 0.0019 18.4 2.0 20 43-62 15-35 (65)
318 2o0y_A Transcriptional regulat 21.9 61 0.0021 22.3 2.7 39 26-64 21-62 (260)
319 2oi8_A Putative regulatory pro 21.7 61 0.0021 20.9 2.5 41 29-69 173-214 (216)
320 3hm5_A DNA methyltransferase 1 21.7 80 0.0027 19.3 2.9 45 28-72 36-87 (93)
321 1dpj_B IA3, proteinase inhibit 21.3 33 0.0011 17.0 0.8 27 42-68 2-29 (33)
322 2eby_A Putative HTH-type trans 21.3 30 0.001 20.4 0.8 26 37-62 20-46 (113)
323 1bja_A Transcription regulator 21.2 70 0.0024 19.5 2.6 36 29-65 19-56 (95)
324 1b0n_A Protein (SINR protein); 21.1 40 0.0014 19.4 1.4 26 38-63 11-37 (111)
325 2oqr_A Sensory transduction pr 21.0 58 0.002 20.9 2.3 28 42-69 176-209 (230)
326 3c7j_A Transcriptional regulat 20.8 45 0.0015 22.7 1.8 26 38-63 46-72 (237)
327 1yyv_A Putative transcriptiona 20.6 1.2E+02 0.0041 18.7 3.7 27 39-65 46-74 (131)
328 2ao9_A Phage protein; structur 20.6 1.6E+02 0.0056 19.4 4.5 22 41-62 48-70 (155)
329 3ljw_A Protein polybromo-1; al 20.3 90 0.0031 19.1 3.0 29 55-83 6-43 (120)
330 3rbn_A DNA mismatch repair pro 20.2 70 0.0024 23.4 2.7 29 23-51 178-206 (284)
331 2y75_A HTH-type transcriptiona 20.0 1.2E+02 0.0042 18.2 3.6 25 41-65 26-51 (129)
No 1
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=95.23 E-value=0.015 Score=36.22 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=42.3
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhc-ccccchhHh-HHHHHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRF-KHSGETISR-FNSILNGV 68 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F-~~S~eTisr-f~~Vl~ai 68 (88)
++.+..--|+||+|-.--.+.|...|+..| +++-.||+. .+.+=+.+
T Consensus 27 ~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 27 SRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999999 899999999 88876544
No 2
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=94.94 E-value=0.019 Score=36.56 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=32.8
Q ss_pred cchhHH------HHHHHHHhccccchhhhhhhcccccchhHhHHHHHHHH
Q 046847 25 VFVDEQ------VCMFLHALAHHVKNQTINNRFKHSGETISRFNSILNGV 68 (88)
Q Consensus 25 v~veE~------la~FL~i~~~n~~~r~i~~~F~~S~eTisrf~~Vl~ai 68 (88)
.+..|+ ++++=.-.+...++|.|+...|.|.+||||.+..|+-+
T Consensus 36 LT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi~r~L~~l 85 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAA 85 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHHHHHHHHc
Confidence 567777 55543333445999999999999999999986665543
No 3
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=94.22 E-value=0.051 Score=34.29 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=41.8
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
++.+..--|+||+|-.--.+.|...|+..||+.-.||.. .+.|=+.+
T Consensus 31 ~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~ 78 (101)
T 3pvv_A 31 TRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEM 78 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 467888999999999988999999999999999999999 88876544
No 4
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=93.94 E-value=0.061 Score=27.38 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=29.0
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HH
Q 046847 24 VVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
.++.+++..+... ...+.+++.|+..++.|..||.+ .+
T Consensus 5 ~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 3556666555544 35778999999999999999988 64
No 5
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=92.34 E-value=0.1 Score=34.30 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=38.0
Q ss_pred CccchhHHHHHHHHHhcc-------ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH-------HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-------n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..-++++++|-||...+. +.+..++++..|-|.+|||| .++.-+
T Consensus 144 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 195 (220)
T 3dv8_A 144 MWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQV 195 (220)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456899999999998876 67889999999999999999 877643
No 6
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=92.20 E-value=0.18 Score=27.45 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=28.4
Q ss_pred hccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
+..+.++++|+...+.|..||.. .+.+.+.+.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 57899999999999999999999 988876653
No 7
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.15 E-value=0.27 Score=27.44 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=35.3
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
..++-.|+-.+.++ ..+.+++.|+..++.|..||++ .+.+.+.+.
T Consensus 10 ~~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 44566666555443 7889999999999999999999 998877664
No 8
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=91.89 E-value=0.12 Score=34.23 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=36.7
Q ss_pred CccchhHHHHHHHHHhcc--------------ccchhhhhhhcccccchhHh-HHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH--------------HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~--------------n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..-+++++||-||..++. +.+..++++..|-|.+|||| +++.-
T Consensus 135 ~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 135 VFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp HTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 446899999999988753 46889999999999999999 88764
No 9
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=91.84 E-value=0.27 Score=27.15 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
++..++-.+.| ....+.+++.|+..++.|..||.+ .+..+..+-.
T Consensus 16 L~~~~r~il~l-~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 16 LTTDQREALLL-TQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCHHHHHHHHH-HHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 55555544444 446789999999999999999999 9888877653
No 10
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=91.83 E-value=0.14 Score=33.36 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=36.6
Q ss_pred CccchhHHHHHHHHHhcc-------------ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH-------------HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-------------n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...+++++||-||..++. +.+..++++..|-|.+|||| +++.-+
T Consensus 136 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 136 AFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 456899999999998764 34678999999999999999 877643
No 11
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=91.18 E-value=0.18 Score=32.75 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=36.2
Q ss_pred CccchhHHHHHHHHHhcc-------------ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH-------------HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-------------n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...++++++|-||..++. ..+..+++...|-|.+|||| +++.-+
T Consensus 133 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 133 AFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 446899999999987654 35778999999999999999 887653
No 12
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=90.95 E-value=0.31 Score=29.44 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=37.3
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
..++-.|+-.+.|+ ..+.+++.|+...+.|..||.. .+.+++.+.
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 34677777777775 8899999999999999999999 998877664
No 13
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=90.67 E-value=0.24 Score=32.72 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=36.6
Q ss_pred CccchhHHHHHHHHHhccc-------------cchhhhhhhcccccchhHh-HHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHH-------------VKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n-------------~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..-+++|+||-||..++.. .+..++++..|-|.+|||| +++.-+
T Consensus 156 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 156 AFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4568999999999987652 4689999999999999999 877643
No 14
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=90.55 E-value=0.31 Score=27.70 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=34.4
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
.+..|+-.+.|+ ..+.++..|+..++.|..||.. .+.+++.+-
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 455566666664 7899999999999999999999 888876543
No 15
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=90.49 E-value=0.25 Score=32.58 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=43.0
Q ss_pred CccchhHHHHHHHHHhcc-----------ccchhhhhhhcccccchhHh-HHHHHHH-HHHhhhhhccCCCCC
Q 046847 23 SVVFVDEQVCMFLHALAH-----------HVKNQTINNRFKHSGETISR-FNSILNG-VLELQHILLKSPKPM 82 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-----------n~~~r~i~~~F~~S~eTisr-f~~Vl~a-i~~L~~~~ik~p~~~ 82 (88)
..-+++++||-||...+. ..+..++++..|-|.+|||| +++.-+. ++.....-|...|++
T Consensus 149 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 221 (227)
T 3dkw_A 149 SLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRE 221 (227)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEESCST
T ss_pred hcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEeCHH
Confidence 345889999999977654 35778999999999999999 8876542 333444444444443
No 16
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.48 E-value=0.3 Score=28.67 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=36.2
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
..++-.|+-.+.|+ ..+.+++.|+...+.|..||.. .+.+++.+.
T Consensus 20 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 34666777666664 7889999999999999999999 888876653
No 17
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=90.21 E-value=0.31 Score=32.66 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=38.3
Q ss_pred cCCCccchhHHHHHHHHHhcc--------ccchhhhhhhcccccchhHh-HHHHH
Q 046847 20 KTDSVVFVDEQVCMFLHALAH--------HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 20 ~~t~~v~veE~la~FL~i~~~--------n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.....-+++++||-||..++. ..+..++++..|-|.+|||| +++.-
T Consensus 157 ~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~ 211 (232)
T 1zyb_A 157 WDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQ 211 (232)
T ss_dssp TSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHH
Confidence 445567899999999998653 35889999999999999999 88764
No 18
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=90.10 E-value=0.31 Score=31.31 Aligned_cols=30 Identities=33% Similarity=0.319 Sum_probs=26.0
Q ss_pred HhccccchhhhhhhcccccchhHhHHHHHH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISRFNSILN 66 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisrf~~Vl~ 66 (88)
++..+.+||+|+..-|.|..||+|....|+
T Consensus 54 lL~~G~SyreIa~~tG~StaTIsRv~r~L~ 83 (107)
T 3frw_A 54 MLTDKRTYLDISEKTGASTATISRVNRSLN 83 (107)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCccHHHHHHHHHHHH
Confidence 367789999999999999999999666654
No 19
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=90.10 E-value=0.24 Score=32.87 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=36.2
Q ss_pred CccchhHHHHHHHHHhcc--------------ccchhhhhhhcccccchhHh-HHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH--------------HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~--------------n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..-+++++||-||..++. ..+..++++..|-|.+|||| +++.-
T Consensus 131 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~ 188 (222)
T 1ft9_A 131 MFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLI 188 (222)
T ss_dssp HTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 456899999999988762 25789999999999999999 88754
No 20
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=90.04 E-value=0.3 Score=31.92 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=36.1
Q ss_pred CccchhHHHHHHHHHhcc-------------ccchhhhhhhcccccchhHh-HHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH-------------HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-------------n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..-+++++||-||..++. ..+..++++..+-|.+|||| +++.-
T Consensus 115 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 115 ATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456789999999998753 25778999999999999999 88764
No 21
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=89.98 E-value=0.058 Score=35.90 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=1.6
Q ss_pred CccchhHHHHHHHHHhcc-------ccchhhhhhhcccccchhHh-HHHHHH-HHHHhhhhhccCCCCC
Q 046847 23 SVVFVDEQVCMFLHALAH-------HVKNQTINNRFKHSGETISR-FNSILN-GVLELQHILLKSPKPM 82 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-------n~~~r~i~~~F~~S~eTisr-f~~Vl~-ai~~L~~~~ik~p~~~ 82 (88)
..-+++|+||-||...+. ..+..++++..|-|.+|||| +++.-+ -++......|..+|++
T Consensus 139 ~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d~~ 207 (213)
T 1o5l_A 139 TTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLKNP 207 (213)
T ss_dssp HCC------------------------------------------------------------------
T ss_pred hhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEechH
Confidence 446789999999987763 46789999999999999999 888754 4556666666666654
No 22
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=89.84 E-value=0.37 Score=29.06 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+..+.|++..+.... ..+.+.+.|+..|+.|..||++ ++.--
T Consensus 15 ~~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567888887776554 4788999999999999999999 77643
No 23
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=89.78 E-value=0.29 Score=33.11 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=42.7
Q ss_pred CccchhHHHHHHHHHhcc--------------ccchhhhhhhcccccchhHh-HHHHHH-HHHHhhhhhccCCCC
Q 046847 23 SVVFVDEQVCMFLHALAH--------------HVKNQTINNRFKHSGETISR-FNSILN-GVLELQHILLKSPKP 81 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~--------------n~~~r~i~~~F~~S~eTisr-f~~Vl~-ai~~L~~~~ik~p~~ 81 (88)
..-+++++||-||..++. ..+..++++..|-|.+|||| +++.-+ -++.....-|...|+
T Consensus 161 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~ 235 (243)
T 3la7_A 161 AHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKP 235 (243)
T ss_dssp HCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC-
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCH
Confidence 345899999999998753 45789999999999999999 887654 233344444444443
No 24
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=89.78 E-value=0.25 Score=32.33 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=36.3
Q ss_pred CccchhHHHHHHHHHhc-------cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 23 SVVFVDEQVCMFLHALA-------HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~-------~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..-+++++||-||..++ -+.+..+++...|-|.+|||| +++.-+
T Consensus 138 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 189 (216)
T 4ev0_A 138 SFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAE 189 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34678999999998664 345899999999999999999 887643
No 25
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=89.52 E-value=0.26 Score=32.10 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=36.0
Q ss_pred CccchhHHHHHHHHHhcc-------------ccchhhhhhhcccccchhHh-HHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH-------------HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-------------n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..-+++++||-||..++. ..+..++++..+-|.+|||| +++.-
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 164 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLR 164 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 457889999999988653 25778999999999999999 88754
No 26
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=89.31 E-value=0.27 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHhccccchhhhhhhcccccchhHh-HH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
.++.-.++.+ ...+.+++.|+..++.|..||++ .+
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444444444 46788999999999999999998 54
No 27
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=88.93 E-value=0.36 Score=29.92 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=30.8
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
...+.+++..|.... ..+.+.+.|+..|+.|..||.+ ++.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 345667766555443 5678999999999999999999 764
No 28
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=88.74 E-value=0.39 Score=32.30 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=35.4
Q ss_pred CccchhHHHHHHHHHhc--------------c-ccchhhhhhhccccc-chhHh-HHHHH
Q 046847 23 SVVFVDEQVCMFLHALA--------------H-HVKNQTINNRFKHSG-ETISR-FNSIL 65 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~--------------~-n~~~r~i~~~F~~S~-eTisr-f~~Vl 65 (88)
..-+++++||-||..++ - ..+..++++..|-|. +|||| +++.-
T Consensus 136 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~ 195 (238)
T 2bgc_A 136 SINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLK 195 (238)
T ss_dssp HTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 34578999999998653 2 567889999999999 89999 88764
No 29
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=88.65 E-value=0.44 Score=31.69 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=36.9
Q ss_pred CCCccchhHHHHHHHHHhcc----------ccchhhhhhhcccccchhHh-HHHHH
Q 046847 21 TDSVVFVDEQVCMFLHALAH----------HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 21 ~t~~v~veE~la~FL~i~~~----------n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
....-+++++||-||..++. +.+..+++...|-|.+|||| .++.-
T Consensus 148 ~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~ 203 (237)
T 3fx3_A 148 QLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLK 203 (237)
T ss_dssp HCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHG
T ss_pred HHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34567899999999999864 24578999999999999999 87753
No 30
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=88.64 E-value=0.37 Score=28.60 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=35.7
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
..++-.|+-.+.|+ ..+.+++.|+..++.|..||.. .+.+++.+
T Consensus 28 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34666677666664 7899999999999999999999 88877654
No 31
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=88.60 E-value=0.47 Score=26.54 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHH-h--ccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 25 VFVDEQVCMFLHA-L--AHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 25 v~veE~la~FL~i-~--~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
.+..|+-.+-|+. + ..+.+++.|+...+.|.+||.. .+..++.+-.
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5566666666655 2 5899999999999999999999 8888776643
No 32
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=88.48 E-value=0.36 Score=33.11 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=36.2
Q ss_pred CccchhHHHHHHHHHhcc-------------ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAH-------------HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~-------------n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...+++++||-||..++. +.+..++++..|-|.+|||| +++.-+
T Consensus 186 ~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 186 AFLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HHCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 446899999999988764 34678999999999999999 887653
No 33
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.43 E-value=0.46 Score=30.19 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=35.0
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+..+.|++..|.... ..+.+.+.|+..|+.|..||++ ++..-
T Consensus 30 ~~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 30 GRPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567888887776655 4679999999999999999999 77654
No 34
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=88.22 E-value=0.82 Score=26.91 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=36.5
Q ss_pred cchhHHHHHHHHH-hc--cccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 25 VFVDEQVCMFLHA-LA--HHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 25 v~veE~la~FL~i-~~--~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
.+..|+-.+-|+. ++ .+.+++.|+...+.|.+||.. .+..+..+-
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5667777776755 34 889999999999999999999 888777664
No 35
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=88.01 E-value=0.38 Score=31.91 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=35.1
Q ss_pred cchh-HHHHHHHHHhcc-------------ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 25 VFVD-EQVCMFLHALAH-------------HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 25 v~ve-E~la~FL~i~~~-------------n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
-+++ ++||-||...+. ..+..+++...|-|.+|||| +++.-+
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 145 GQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4566 999999998764 45789999999999999999 887643
No 36
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=87.98 E-value=0.42 Score=31.58 Aligned_cols=43 Identities=23% Similarity=0.253 Sum_probs=35.8
Q ss_pred CccchhHHHHHHHHHhc--------------cccchhhhhhhcccccchhHh-HHHHH
Q 046847 23 SVVFVDEQVCMFLHALA--------------HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~--------------~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
...+++++||-||..++ ...+..++++..|-|.+|||| +++.-
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 145 IFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFA 202 (227)
T ss_dssp HHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44689999999998764 235788999999999999999 88754
No 37
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=87.91 E-value=0.41 Score=32.38 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=35.6
Q ss_pred CccchhHHHHHHHHHhcc--------------ccchhhhhhhcccccchhHh-HHHH
Q 046847 23 SVVFVDEQVCMFLHALAH--------------HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~--------------n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..-+++++||-||..++. ..+..+++...|-|.+|||| +++.
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L 201 (250)
T 3e6c_C 145 NTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASL 201 (250)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 456899999999987542 45889999999999999999 8874
No 38
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=87.87 E-value=0.79 Score=27.09 Aligned_cols=45 Identities=4% Similarity=0.029 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
++-.++-.+.|+ ...+.+++.|+...+.|..||.. .+..+..+-.
T Consensus 38 L~~~~r~vl~l~-~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRS-YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHH-HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 555666655553 35779999999999999999999 8888877765
No 39
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=86.60 E-value=1.1 Score=27.79 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=39.5
Q ss_pred CCCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHH
Q 046847 21 TDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 21 ~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..+.=+.++++++.+..+..+.+..+++.+|+-|.++|.+ -++.
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3367889999999999999999999999999999999988 6665
No 40
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=86.36 E-value=1.2 Score=25.17 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=36.8
Q ss_pred ccchhHHHHHHHHHh-c--cccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 24 VVFVDEQVCMFLHAL-A--HHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 24 ~v~veE~la~FL~i~-~--~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
..+..|+-.+-|+.. + .+.++..|+...+.|.+||.. .+..++.+-
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356667766666552 2 789999999999999999999 888887776
No 41
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=86.30 E-value=0.56 Score=30.40 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=34.6
Q ss_pred CCccchhHHHHHHHHH--hccccchhhhhh----hc--ccccchhHh-HHH
Q 046847 22 DSVVFVDEQVCMFLHA--LAHHVKNQTINN----RF--KHSGETISR-FNS 63 (88)
Q Consensus 22 t~~v~veE~la~FL~i--~~~n~~~r~i~~----~F--~~S~eTisr-f~~ 63 (88)
-..+|++++++|-.|. -..+.+..+++. .| +.|.+|||+ .+.
T Consensus 9 R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 9 RRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp SSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 3678999999999999 345567888999 99 889999998 654
No 42
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=85.89 E-value=0.72 Score=30.52 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=34.9
Q ss_pred CccchhHHHHHHHHHhc-------------cccchhhhhhhcccccchhHh-HHHHH
Q 046847 23 SVVFVDEQVCMFLHALA-------------HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~-------------~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..-++++++|-||..++ -..+..++++..+-|.+|||| +++.-
T Consensus 149 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 149 TQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFV 205 (232)
T ss_dssp HHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34678999999996533 245788999999999999999 88764
No 43
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=85.88 E-value=0.47 Score=30.97 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHhccccchhhhhhhcccccchhHhHHHHHH
Q 046847 36 HALAHHVKNQTINNRFKHSGETISRFNSILN 66 (88)
Q Consensus 36 ~i~~~n~~~r~i~~~F~~S~eTisrf~~Vl~ 66 (88)
-.+..+.+||+|+...+.|..||+|..+.|+
T Consensus 70 klL~~G~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 70 KMIKQGYTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3467789999999999999999999666553
No 44
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=85.86 E-value=1 Score=28.26 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
.+..++- +|......+.+++.|+..++.|..||.+ .+.....+-.
T Consensus 23 L~~~~r~-vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 23 LTDKQMN-YIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp SCHHHHH-HHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4555554 4444456789999999999999999999 8888776643
No 45
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=85.83 E-value=0.58 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.3
Q ss_pred hccccchhhhhhhcccccchhHh-HH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
...+.+.+.|+..++.|..||.+ ++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34568999999999999999988 54
No 46
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.50 E-value=0.86 Score=27.06 Aligned_cols=41 Identities=10% Similarity=-0.113 Sum_probs=33.0
Q ss_pred ccchhHHHHHHHHHhcc-ccchhhhhhhcccccchhHh-HHHH
Q 046847 24 VVFVDEQVCMFLHALAH-HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~-n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..|.|.+..+.-..... +.+.+.|+..||.|..||.+ ....
T Consensus 5 ~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 46777787777666655 88999999999999999998 7653
No 47
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=85.36 E-value=1.5 Score=27.75 Aligned_cols=50 Identities=6% Similarity=0.090 Sum_probs=40.4
Q ss_pred CcCCcCC--CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 16 DERLKTD--SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 16 ~~~L~~t--~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+++|.++ +.=....++++-.++.+++.|.+.+..+|+-|.+||.+ -..+-
T Consensus 23 ~~dlp~~~~rRWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 23 RADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp TTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3455444 44455579999999999999999999999999999998 76653
No 48
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=84.27 E-value=1.5 Score=27.28 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
.+..++ .+|......+.+++.|+..++.|..||.+ .+..+..+-.
T Consensus 26 L~~~~r-~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQR-NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 444444 44555556789999999999999999998 8887766643
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.24 E-value=1.4 Score=31.15 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=37.6
Q ss_pred cCCCccchhHHHHHHHHHhccccchhhhhhhc-ccccchhHh-HHHHH
Q 046847 20 KTDSVVFVDEQVCMFLHALAHHVKNQTINNRF-KHSGETISR-FNSIL 65 (88)
Q Consensus 20 ~~t~~v~veE~la~FL~i~~~n~~~r~i~~~F-~~S~eTisr-f~~Vl 65 (88)
+.++.+....++||||-.=-.+.++.+|+..| +++..||.. ++.+=
T Consensus 252 ~~~~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g~~~~~tv~~~~~~~~ 299 (324)
T 1l8q_A 252 KRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVE 299 (324)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHCCCHHHHHHHSSCCCSTHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHHH
Confidence 34567889999999986544468999999999 899999988 87763
No 50
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=84.24 E-value=0.79 Score=29.49 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=32.4
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
+..+.|++..|..+. ..+.+.+.|+..|+.|..||++ ++.
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 467788887775554 4679999999999999999998 754
No 51
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=83.72 E-value=1.3 Score=26.54 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=34.4
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
..++-.|+-.+.|+ . .+.++.+|+...+.|..||.. ...+++.+.
T Consensus 28 ~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 28 DVLTPRECLILQEV-E-KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -CCCHHHHHHHHHH-H-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHH-H-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 44566666554443 3 899999999999999999999 888876553
No 52
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.70 E-value=2.8 Score=25.43 Aligned_cols=39 Identities=5% Similarity=0.106 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..++.++.++.....+..+++..++.|..|||+ .+..-+
T Consensus 32 ~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 32 PSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677666655579999999999999999999 776543
No 53
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=83.64 E-value=1.9 Score=26.47 Aligned_cols=46 Identities=22% Similarity=0.139 Sum_probs=36.7
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
...++-.|+-.+.| +..+.++++|+...+.|..||.. ...+++.+.
T Consensus 32 ~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45577777765555 35899999999999999999999 888876553
No 54
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=83.43 E-value=0.72 Score=28.47 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.7
Q ss_pred HHHhccccchhhhhhhcccccchhHh-HHH
Q 046847 35 LHALAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 35 L~i~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
-++..++.+..+++..+|.|..|||| ++.
T Consensus 14 ~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 14 KYIVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 34444558999999999999999999 865
No 55
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=82.63 E-value=1 Score=24.67 Aligned_cols=39 Identities=5% Similarity=0.177 Sum_probs=31.1
Q ss_pred ccchhHHHHHHHHHhccccc----hhhhhhhcccccchhHh-HHH
Q 046847 24 VVFVDEQVCMFLHALAHHVK----NQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~n~~----~r~i~~~F~~S~eTisr-f~~ 63 (88)
.-+.|.++.+ +-.+..+.+ .+.++..|+.|.+||.+ .++
T Consensus 5 ~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 5 IFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4677888877 555666678 99999999999999988 543
No 56
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=82.32 E-value=0.6 Score=32.96 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=26.8
Q ss_pred cchhhhhhhcccccchhHh-HHH-----------HHHHHHHhh
Q 046847 42 VKNQTINNRFKHSGETISR-FNS-----------ILNGVLELQ 72 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~-----------Vl~ai~~L~ 72 (88)
.+-++|+...|.|..|||| +|. |++++-+|.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lg 53 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELG 53 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 5778999999999999999 975 888877765
No 57
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=82.28 E-value=2 Score=26.47 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=38.3
Q ss_pred ccchhHHHHHHHHHh---ccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 24 VVFVDEQVCMFLHAL---AHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 24 ~v~veE~la~FL~i~---~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
..+-.|+-.+-|+.. +.+.++..|+..++.|.+||.. .+..++.+-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 367778887777664 3789999999999999999999 8887776653
No 58
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.04 E-value=1.2 Score=27.51 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=32.1
Q ss_pred CccchhHHHHHHHHHhccccch-hhhhhhcccccchhHh-HHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKN-QTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~-r~i~~~F~~S~eTisr-f~~ 63 (88)
+..|.|++..+--+...++.+. ++++..|+.|..||++ .+.
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred eeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhc
Confidence 5688899888876664455554 4999999999999999 765
No 59
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=79.29 E-value=1.6 Score=25.26 Aligned_cols=37 Identities=5% Similarity=0.033 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcc-ccchhhhhhhcccccchhHh-HHHHH
Q 046847 29 EQVCMFLHALAH-HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~~~-n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-++.|..++..+ +.+..+++..++.|..||++ .+..-
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345555444444 68999999999999999999 77654
No 60
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=78.80 E-value=0.4 Score=30.90 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=1.6
Q ss_pred CccchhHHHHHHHHHhc---cccchhhhhhhcccccchhHh-HHHH
Q 046847 23 SVVFVDEQVCMFLHALA---HHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~---~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
...+++|++|-||...+ ...+..+++..-|-|.+|+|| .++.
T Consensus 147 ~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 147 HMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp HHC-------------------------------------------
T ss_pred hcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 45678999999997643 457889999999999999999 8764
No 61
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=78.35 E-value=2.4 Score=27.07 Aligned_cols=60 Identities=5% Similarity=-0.011 Sum_probs=42.8
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH-hhhhhccCCCCCC
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE-LQHILLKSPKPMP 83 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~-L~~~~ik~p~~~~ 83 (88)
..++..++-++ +...-.+.+++.|+...+.|..||.. .+..+..+-. |......++++..
T Consensus 92 ~~Lp~~~r~vl-~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~~~~~~~~~ 153 (157)
T 2lfw_A 92 ARMTPLSRQAL-LLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHH 153 (157)
T ss_dssp TTSCTTHHHHH-TTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCCCCCCCCCC
T ss_pred HhCCHHHHHHH-HHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 33555555544 44445679999999999999999999 9998888876 5555444444444
No 62
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=77.87 E-value=2.7 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=23.7
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++..++.|..||+| .+...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~ 61 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLI 61 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5678999999999999999999 76654
No 63
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=77.77 E-value=3.5 Score=27.14 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=35.1
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
++..|+-.+-|+. ..+.++..|+..++.|.+||.+ .+..+..+-.
T Consensus 188 L~~~~r~vl~l~~-~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIF-YEELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4455555555544 5789999999999999999999 9888877754
No 64
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=77.71 E-value=2.4 Score=22.85 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=24.5
Q ss_pred HHHHHHHHHh--ccccchhhhhhhc-----ccccchhHh-HH
Q 046847 29 EQVCMFLHAL--AHHVKNQTINNRF-----KHSGETISR-FN 62 (88)
Q Consensus 29 E~la~FL~i~--~~n~~~r~i~~~F-----~~S~eTisr-f~ 62 (88)
++.++.+..+ ....+..++...| +.|..||.| .+
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4444444333 3457888899999 999999999 88
No 65
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=77.24 E-value=1.2 Score=31.29 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=24.9
Q ss_pred chhhhhhhcccccchhHh-HHH-----------HHHHHHHhh
Q 046847 43 KNQTINNRFKHSGETISR-FNS-----------ILNGVLELQ 72 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~-----------Vl~ai~~L~ 72 (88)
+.++|+...|.|..|||| ++. |++++-+|.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lg 43 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH 43 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcCcCCCCHHHHHHHHHHHHHhC
Confidence 568999999999999999 984 777776664
No 66
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=76.37 E-value=7 Score=23.65 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.++-..|+.-..+.+..+++..++.|.+||++ .+..-
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455555665545679999999999999999998 66544
No 67
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=74.94 E-value=11 Score=22.88 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=27.0
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhcc--cccchhHh-HHH
Q 046847 24 VVFVDEQVCMFLHALAHHVKNQTINNRFK--HSGETISR-FNS 63 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~n~~~r~i~~~F~--~S~eTisr-f~~ 63 (88)
.++.++.-.+.-+.-....+.+.|+..++ .|.+||.+ +++
T Consensus 60 ~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 60 ALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp SSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 35555544443333334589999999998 78889988 765
No 68
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=74.85 E-value=2.6 Score=24.80 Aligned_cols=36 Identities=6% Similarity=0.038 Sum_probs=27.8
Q ss_pred HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
++.|.-++ ..+.+..+++..++.|..||++ .+..-+
T Consensus 33 r~~Il~~L-~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 33 RRKILRML-DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444444 6779999999999999999999 776543
No 69
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.79 E-value=2.9 Score=24.56 Aligned_cols=40 Identities=3% Similarity=0.022 Sum_probs=29.4
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHH
Q 046847 24 VVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..+.|.+..+.-.. ..+.+.+.|+..|+.|..||.+ .++-
T Consensus 22 ~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 22 SLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp SCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45666655444333 4568999999999999999999 7654
No 70
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=74.77 E-value=1.9 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.1
Q ss_pred ccchhhhhhhcccccchhHh-HH-----------HHHHHHHHhh
Q 046847 41 HVKNQTINNRFKHSGETISR-FN-----------SILNGVLELQ 72 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~-----------~Vl~ai~~L~ 72 (88)
-.+-++|+...|.|..|||| ++ .|++++-+|.
T Consensus 9 ~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lg 52 (366)
T 3h5t_A 9 YGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMG 52 (366)
T ss_dssp TTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhC
Confidence 35778999999999999999 96 5788877775
No 71
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=74.45 E-value=5.6 Score=24.43 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=31.1
Q ss_pred HHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 33 MFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 33 ~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
+|. ..-.+.+++.|+..++.|..||.. .+..++.+-.
T Consensus 117 v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 117 VLT-YLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 444 355889999999999999999999 9988877765
No 72
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=74.16 E-value=5 Score=25.10 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=27.4
Q ss_pred hccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
.-.|.+...|+.++|.|..|||| ..+.-+..-
T Consensus 31 Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 31 LVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 44678899999999999999999 988877653
No 73
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=73.97 E-value=3.9 Score=25.45 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHhhCcCCcCCCccchhHHHHHHHHHhccc-cchhhhhhhcccccchhHh-HHHHH
Q 046847 11 ELLCSDERLKTDSVVFVDEQVCMFLHALAHH-VKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 11 ~~L~~~~~L~~t~~v~veE~la~FL~i~~~n-~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+.|+..++|.+ .+.++-..|+.-+.+ .+..+|+...+.|.+||+| .....
T Consensus 16 ~~l~~~~gLt~-----~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~ 67 (123)
T 3r0a_A 16 DVIKCALNLTK-----ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH 67 (123)
T ss_dssp HHHHHHHTCCH-----HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCH-----HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444445543 245555556655544 8999999999999999999 66654
No 74
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=73.22 E-value=3.4 Score=24.44 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=21.2
Q ss_pred ccccchhhhhhhcccccchhHh-HHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
|...+.+.|++.|+.|..||.+ ....
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567888899999999999987 6554
No 75
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=73.18 E-value=6 Score=25.27 Aligned_cols=42 Identities=7% Similarity=-0.006 Sum_probs=32.5
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHHh
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLEL 71 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~L 71 (88)
++-++-| ....+.+++.|+...+.|..||.. .+..++.+-..
T Consensus 145 ~r~vl~l-~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 145 LRMAITL-RELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HHHHHHH-HHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3333334 345789999999999999999999 98888877653
No 76
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=73.11 E-value=3.2 Score=25.19 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=24.0
Q ss_pred HhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
......+..+++..++.|..||++ .+..-
T Consensus 34 L~~~~~s~~eLa~~lgis~stvs~~L~~L~ 63 (108)
T 2kko_A 34 LAQGERAVEAIATATGMNLTTASANLQALK 63 (108)
T ss_dssp HTTCCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334668999999999999999999 77654
No 77
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=72.55 E-value=0.74 Score=32.53 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred ccchhhhhhhcccccchhHh-HH
Q 046847 41 HVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
..+-++|+...|.|..|||| ++
T Consensus 6 ~~ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 6 KSSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp -----------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 35779999999999999999 98
No 78
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=72.40 E-value=11 Score=26.43 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=35.6
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
...|-.|+-.+.|. +.+.++.+|+...+.|..||.. ...+.+.+.
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 35676666555554 6999999999999999999999 888876543
No 79
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=71.83 E-value=5.9 Score=24.51 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHHhhhhhcc---CCCCCC
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLELQHILLK---SPKPMP 83 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~L~~~~ik---~p~~~~ 83 (88)
++..+-..+..- -..+.+..+++...+.|..||++ .+..- ...||. .|++..
T Consensus 36 lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le------~~Glv~r~~~~~~~D 91 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL------NAELVKLEKPDSNTD 91 (151)
T ss_dssp CCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH------HTTSEEC--------
T ss_pred CCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH------HCCCEEeeCCCCCCC
Confidence 455444433333 66779999999999999999999 77765 556665 345543
No 80
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=71.72 E-value=3 Score=24.45 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-++.|.-+......+..+++..++.|..|||+ .+..-
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~ 61 (98)
T 3jth_A 24 RRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLR 61 (98)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34555555545678999999999999999999 77654
No 81
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=71.67 E-value=13 Score=22.71 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=35.5
Q ss_pred HHHHHHHhhCcC--CcCCCccchhHHHHH-HHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 7 GLLFELLCSDER--LKTDSVVFVDEQVCM-FLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 7 ~~L~~~L~~~~~--L~~t~~v~veE~la~-FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..+...+..... +...-+++..+-..+ +|+. ..+.+..+++..++.|..||++ .+..-+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 18 NMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp HHHHHHHHHC----CCGGGTCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444332 222235666554332 3333 3378999999999999999999 777653
No 82
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=71.47 E-value=4.4 Score=24.95 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=28.4
Q ss_pred hHHHHHHHHHh---ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 28 DEQVCMFLHAL---AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 28 eE~la~FL~i~---~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++++-..||.+ +...+.++++..++.|..||++ .+..-
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le 56 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLE 56 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHH
Confidence 34444455554 4567999999999999999999 77654
No 83
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=71.46 E-value=4.8 Score=23.76 Aligned_cols=37 Identities=5% Similarity=0.107 Sum_probs=28.2
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-++.|..+....+.+..+++..++.|..|||+ .+..-
T Consensus 24 ~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~ 61 (102)
T 3pqk_A 24 VRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLR 61 (102)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455444445678999999999999999999 77654
No 84
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=70.80 E-value=3.9 Score=24.51 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHhhCcCCcCCCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 2 DRKTFGLLFELLCSDERLKTDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 2 ~~~~F~~L~~~L~~~~~L~~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+.+.+..+.+.++.- . -.-++.|+.+......+..+++..++.|..|||+ .+..-
T Consensus 9 ~~~~~~~~~~~~~~l---~------~~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~ 64 (106)
T 1r1u_A 9 NTDTLERVTEIFKAL---G------DYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLK 64 (106)
T ss_dssp CHHHHHHHHHHHHHT---C------SHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---C------CHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344455555555432 1 2234555555555567999999999999999999 76654
No 85
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=70.65 E-value=4 Score=25.01 Aligned_cols=38 Identities=3% Similarity=-0.009 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.-++.|.-+....+.+...++..++.|..|||+ .+..-
T Consensus 18 ~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~ 56 (118)
T 3f6o_A 18 PTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLE 56 (118)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 345556555556778999999999999999999 77653
No 86
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=70.25 E-value=5.1 Score=22.89 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=22.4
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
...+..+++..++.|..||++ .+...
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~ 39 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLE 39 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358999999999999999999 77654
No 87
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=69.55 E-value=4.7 Score=27.92 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=23.2
Q ss_pred hccccchhhhhhhcccccchhHh-HHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
...+.+...|+.++|.|..|||| ...
T Consensus 21 y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 21 KNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 45779999999999999999999 765
No 88
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=69.09 E-value=4.9 Score=23.86 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=26.5
Q ss_pred HHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 31 VCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 31 la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+.|.-+....+.+..+++..++.|..||++ .+..-
T Consensus 24 ~~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~~L~ 59 (114)
T 2oqg_A 24 WEILTELGRADQSASSLATRLPVSRQAIAKHLNALQ 59 (114)
T ss_dssp HHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334333345668999999999999999999 76654
No 89
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=68.29 E-value=16 Score=24.68 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
....|-.|+-.+.| ++.+.++..|+...+.|..||.. .+.+.+.+.
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34577777766555 47999999999999999999999 888776554
No 90
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=67.18 E-value=1.6 Score=30.41 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=25.7
Q ss_pred cchhhhhhhcccccchhHh-HHH-----------HHHHHHHhh
Q 046847 42 VKNQTINNRFKHSGETISR-FNS-----------ILNGVLELQ 72 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~-----------Vl~ai~~L~ 72 (88)
.+.++|+.+.|.|..|||| ++. |++|+-+|.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lg 45 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLG 45 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHC
Confidence 4678999999999999999 975 677766665
No 91
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=67.18 E-value=18 Score=21.81 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=28.9
Q ss_pred cchhH-HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDE-QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE-~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+ .+-..|+ ..+.+...++..++.|..||++ .+...
T Consensus 35 l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 35 LSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp CCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 44333 3334444 7778999999999999999999 77665
No 92
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=67.17 E-value=1.1 Score=31.42 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=0.0
Q ss_pred cccchhhhhhhcccccchhHh-HHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
...+-++|+...|.|..|||| ++.
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 346789999999999999999 974
No 93
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=67.06 E-value=7.6 Score=23.15 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=24.9
Q ss_pred HHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 35 LHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 35 L~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
|+.-|...+.++++..++.|..||++ +...-
T Consensus 27 l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~ 58 (110)
T 1q1h_A 27 LLDKGTEMTDEEIANQLNIKVNDVRKKLNLLE 58 (110)
T ss_dssp HHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33456578999999999999999998 66544
No 94
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=66.80 E-value=10 Score=25.90 Aligned_cols=46 Identities=9% Similarity=-0.017 Sum_probs=36.3
Q ss_pred CCCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 21 TDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 21 ~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
+....|..|+-.+.| ++.+.++++|+...+.|..||.. ...+.+.+
T Consensus 172 ~~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 172 SNVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GGCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 345577777655544 47999999999999999999999 88887654
No 95
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=66.24 E-value=5 Score=23.04 Aligned_cols=39 Identities=5% Similarity=0.112 Sum_probs=29.6
Q ss_pred hHHHHHHHHHh-ccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 28 DEQVCMFLHAL-AHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 28 eE~la~FL~i~-~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
.-++.|+.+.. ..+.+..+++..++.|..||++ .+..-+
T Consensus 16 ~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 16 PVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566655554 3568999999999999999999 776653
No 96
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=66.09 E-value=13 Score=25.07 Aligned_cols=46 Identities=7% Similarity=-0.053 Sum_probs=37.2
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
....|-.|+-.+.| ++.+.++..|+...+.|..||.. .+.+.+.+.
T Consensus 171 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34577777766555 47999999999999999999999 888876654
No 97
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=65.92 E-value=5.1 Score=24.74 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=27.5
Q ss_pred HHHHHHHHh-ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 30 QVCMFLHAL-AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 30 ~la~FL~i~-~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++.|+.+.. ....+...++..++.|.+|||+ .+..-
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~ 81 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY 81 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344555444 4568999999999999999999 77654
No 98
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=65.64 E-value=3.9 Score=24.47 Aligned_cols=42 Identities=10% Similarity=-0.030 Sum_probs=32.2
Q ss_pred ccchhHHHHHHHHHhccc-------cchhhhhhhcccccchhHh-HHHHH
Q 046847 24 VVFVDEQVCMFLHALAHH-------VKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~n-------~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..|.|.++.+--....++ .+.+.|+..||.|..||.+ .+...
T Consensus 6 ~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 6 RFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456777776665554443 7999999999999999999 77643
No 99
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=65.62 E-value=3.4 Score=24.47 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=21.2
Q ss_pred cccchhhhhhhcccccchhHh-HHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
...+..+++..|+.|.+||-| .++.
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 457888999999999999988 6654
No 100
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=65.40 E-value=19 Score=21.55 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHHHHHHHhc-cccchhhhhhhcccccchhHh-HHHHH
Q 046847 30 QVCMFLHALA-HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 30 ~la~FL~i~~-~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+-.+|+.-+ .+.+..+++..++.|..||++ .+..-
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 72 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE 72 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 3444444443 478999999999999999999 77765
No 101
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=65.38 E-value=5.6 Score=24.75 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=27.8
Q ss_pred HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
++.|+.+......+..+++..++-|..|||+ .+..-+
T Consensus 48 rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 48 RLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445555444468999999999999999999 776543
No 102
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=65.15 E-value=6.7 Score=24.24 Aligned_cols=38 Identities=3% Similarity=0.061 Sum_probs=27.7
Q ss_pred hHHHHHHHHHh--ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 28 DEQVCMFLHAL--AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 28 eE~la~FL~i~--~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+..|...+..+ ..+.+.++++..++.|..||++ .+..-
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44444444333 3568999999999999999999 77654
No 103
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=64.87 E-value=4.2 Score=21.99 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=23.8
Q ss_pred HHHHHhccccchhhhhhhcccccchhHh-HH
Q 046847 33 MFLHALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 33 ~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
++.++..++ +...++...+.|..|||+ .+
T Consensus 6 l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 6 LSKYLEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 344556667 999999999999999999 74
No 104
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=64.28 E-value=8 Score=21.66 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.++++--.|-.-+...+..+|+..++.|.+||++ +...-
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455544454433568999999999999999998 66543
No 105
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=64.18 E-value=7.3 Score=26.90 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=37.3
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
..++-.|+-++-|+ ..+.+++.|+...+.|..||.. .+..++.+-
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 35777777777775 5999999999999999999999 888776553
No 106
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=63.83 E-value=7.6 Score=24.62 Aligned_cols=44 Identities=7% Similarity=-0.008 Sum_probs=33.5
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
++..++-++-|+ .-.+.++..|+...+.|..||.. .+..++.+-
T Consensus 136 L~~~~r~vl~l~-~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 136 LPEAQRALIERA-FFGDLTHRELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp SCHHHHHHHHHH-HHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 445555555553 34679999999999999999999 888877664
No 107
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=63.26 E-value=2.8 Score=23.81 Aligned_cols=20 Identities=30% Similarity=0.092 Sum_probs=17.0
Q ss_pred chhhhhhhcccccchhHh-HH
Q 046847 43 KNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~ 62 (88)
+.++|+.+-|.|..|||| ++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 457888899999999999 87
No 108
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=63.24 E-value=4.6 Score=28.95 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.3
Q ss_pred cccchhhhhhhcccccchhHh-HHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
.+.+.++++.+|+.|..||+| ..+.
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 449999999999999999999 8764
No 109
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=62.93 E-value=1.5 Score=30.65 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=0.0
Q ss_pred cchhhhhhhcccccchhHh-HHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+.++|+...|.|..|||| ++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 5788999999999999999 986
No 110
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=62.71 E-value=6.4 Score=24.13 Aligned_cols=35 Identities=6% Similarity=0.138 Sum_probs=26.7
Q ss_pred HHHHHHHHhccccchhhhhhhcccccchhHh-HHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
++.|..+......+..+++..++.|..|||+ .+..
T Consensus 23 r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L 58 (118)
T 2jsc_A 23 RCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCL 58 (118)
T ss_dssp HHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4444444445568899999999999999999 7764
No 111
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=62.57 E-value=1.6 Score=30.56 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=0.0
Q ss_pred cchhhhhhhcccccchhHh-HHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+.++|+...|.|..|||| ++.
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 3678999999999999999 986
No 112
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=62.12 E-value=14 Score=22.08 Aligned_cols=41 Identities=7% Similarity=-0.033 Sum_probs=29.0
Q ss_pred ccchhHH-HHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 24 VVFVDEQ-VCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 24 ~v~veE~-la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+++..+- +-..|+. ..+.+..+++..++.|..||++ .+..-
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~ 77 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLD 77 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5665543 2233333 3378999999999999999999 77654
No 113
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=61.18 E-value=23 Score=21.66 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=24.6
Q ss_pred HHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 35 LHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 35 L~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
|+.-+.+.+..+++...+.+..||++ .+..-
T Consensus 48 l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 48 ACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp HHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 33334456999999999999999999 77654
No 114
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=61.12 E-value=7.5 Score=25.26 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.-++.|..+......+...|+..++.|..|||+ ++..-
T Consensus 58 p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~ 96 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLT 96 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345666666556678999999999999999999 77654
No 115
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=61.06 E-value=1.7 Score=30.78 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=0.0
Q ss_pred cchhhhhhhcccccchhHh-HHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+.++|+.+.|.|..|||| ++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 4678999999999999999 986
No 116
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=60.83 E-value=6.8 Score=25.32 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 34 FLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 34 FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
.|..++.|.++.+|+...+-|..||.. ...+.+-+.
T Consensus 162 vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 162 ILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 355667888999999999999999999 888877663
No 117
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=60.76 E-value=8.6 Score=21.74 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHhccccchhhhhhhcc----cccchhHh-HHHHH
Q 046847 26 FVDEQVCMFLHALAHHVKNQTINNRFK----HSGETISR-FNSIL 65 (88)
Q Consensus 26 ~veE~la~FL~i~~~n~~~r~i~~~F~----~S~eTisr-f~~Vl 65 (88)
..+..+-.+||. ..+.+.++|++.++ .|..||++ .+...
T Consensus 9 ~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~ 52 (82)
T 1p6r_A 9 DAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLI 52 (82)
T ss_dssp HHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 346677778887 55799999999997 47788888 55543
No 118
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=60.76 E-value=9.1 Score=22.32 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=21.4
Q ss_pred cchhhhhhhcccccchhHh-HHHHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+..+++..++.+..||++ .+..-
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le 55 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFE 55 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7899999999999999999 76654
No 119
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=60.29 E-value=13 Score=22.45 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.8
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.|..||++ .+...
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~ 76 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRME 76 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 458999999999999999999 77665
No 120
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=59.87 E-value=1.9 Score=30.55 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=0.0
Q ss_pred cchhhhhhhcccccchhHh-HHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+-++|+...|.|..|||| +|.
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 4678999999999999999 985
No 121
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=59.43 E-value=1.9 Score=30.13 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=0.0
Q ss_pred cchhhhhhhcccccchhHh-HHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+-++|+...|.|..|||| +|.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 4678999999999999999 986
No 122
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=59.07 E-value=10 Score=23.03 Aligned_cols=41 Identities=10% Similarity=0.276 Sum_probs=29.1
Q ss_pred ccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 24 VVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+++..+- .+..++..++.+..+++..++.|..||++ .+..-
T Consensus 35 ~lt~~~~-~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 35 ALTNTQE-HILMLLSEESLTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp CCCHHHH-HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4554443 33334444449999999999999999999 77654
No 123
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=58.95 E-value=8.2 Score=22.87 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhc-cccchhhhhhhcccccchhHh-HHHHHHH
Q 046847 28 DEQVCMFLHALA-HHVKNQTINNRFKHSGETISR-FNSILNG 67 (88)
Q Consensus 28 eE~la~FL~i~~-~n~~~r~i~~~F~~S~eTisr-f~~Vl~a 67 (88)
.-++.|+.+.+. .+.+..+++..++-|.+|||+ .+..-++
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 445667644443 458999999999999999999 8876555
No 124
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=58.68 E-value=17 Score=21.68 Aligned_cols=26 Identities=4% Similarity=0.066 Sum_probs=22.8
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.|..||++ .+...
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~ 72 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMK 72 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 457999999999999999999 77765
No 125
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.53 E-value=13 Score=22.26 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=28.1
Q ss_pred cchhHH-HHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDEQ-VCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE~-la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+- +-..|+. ..+.+..+++..++.|..||++ .+..-
T Consensus 34 lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp CCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 444333 3333443 3468999999999999999999 77655
No 126
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=58.50 E-value=28 Score=21.98 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=29.9
Q ss_pred ccchhH-HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 24 VVFVDE-QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 24 ~v~veE-~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+++..+ .+-.+|+..+.+.+..+++..++.+..||++ .+..-
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 345444 3333444445568999999999999999999 77765
No 127
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=58.19 E-value=15 Score=20.92 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCcCCcCCCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 6 FGLLFELLCSDERLKTDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 6 F~~L~~~L~~~~~L~~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+..+.+.|+. .++.+ .+-++-..|+. ..+.+..+++..++.|..||++ .+...
T Consensus 6 ~~~~~~~l~~-~~l~~-----~~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~ 59 (109)
T 1sfx_A 6 LGELVKALEK-LSFKP-----SDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLL 59 (109)
T ss_dssp HHHHHHHHHH-TCCCH-----HHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCH-----HHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455566653 23322 23333333333 3568999999999999999999 77765
No 128
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=58.15 E-value=15 Score=21.97 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.3
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++..++.|..||++ .+...
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~ 68 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLE 68 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4568999999999999999999 77655
No 129
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=58.11 E-value=2.1 Score=30.30 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=0.0
Q ss_pred cchhhhhhhcccccchhHh-HHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+-++|+...|.|..|||| ++.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 5678999999999999999 983
No 130
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=58.00 E-value=4.9 Score=24.42 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=21.1
Q ss_pred cccchhhhhhhcccccchhHh-HHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
...+..+++..|+.|.+||-| +.+.
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 457888999999999999988 6654
No 131
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=57.80 E-value=11 Score=23.00 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
++..+ ..+..++..++.+..+++..++.|..||++ .+..-+
T Consensus 35 lt~~~-~~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 35 LSYLD-FSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp CCHHH-HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44433 333333333444999999999999999999 777653
No 132
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=57.47 E-value=14 Score=22.46 Aligned_cols=42 Identities=5% Similarity=0.132 Sum_probs=29.1
Q ss_pred ccchhHH-HHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 24 VVFVDEQ-VCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 24 ~v~veE~-la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
+++..+- +-..|+. ..+.+..+++..++.|..||++ .+...+
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 3554443 3333333 2368999999999999999999 777663
No 133
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=57.47 E-value=16 Score=22.17 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=25.5
Q ss_pred cchhHH-HHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDEQ-VCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE~-la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+- +-..|+. ..+.+..+++..++.|..||++ .+..-
T Consensus 35 lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 76 (142)
T 3ech_A 35 LTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELE 76 (142)
T ss_dssp CCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444443 3333333 2478999999999999999999 77765
No 134
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=57.16 E-value=7 Score=25.85 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=17.0
Q ss_pred cchhhhhhhc-----ccccchhHh-HHHH
Q 046847 42 VKNQTINNRF-----KHSGETISR-FNSI 64 (88)
Q Consensus 42 ~~~r~i~~~F-----~~S~eTisr-f~~V 64 (88)
.+..++.+.+ ..|..|||| +++.
T Consensus 20 ~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 20 ETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp CSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 4455555555 999999999 8764
No 135
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=56.26 E-value=13 Score=28.63 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHh---ccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 26 FVDEQVCMFLHAL---AHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 26 ~veE~la~FL~i~---~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
+-.|+-.+-|+.. +.+.++..|+..++.|.+||.. .+..++.+-
T Consensus 377 ~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 377 SEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3344444555442 2789999999999999999999 888877665
No 136
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=55.64 E-value=15 Score=21.77 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=19.5
Q ss_pred hccccchhhhhhhcccccchhHh-HHHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
.+.+.+..+++..++-|..+++| |++.
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34456667777888888888888 8775
No 137
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=55.11 E-value=3 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.0
Q ss_pred cchhhhhhhcccccchhHh-HHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+..+|+..-|.|..|||| ++.
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln~ 32 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALMN 32 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 4678999999999999999 863
No 138
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=54.83 E-value=22 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=23.0
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.+..||++ .+..-
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le 85 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLL 85 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468999999999999999999 77755
No 139
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=54.75 E-value=18 Score=20.27 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHhc---cccchhhhhhhc-----ccccchhHh-HHHH
Q 046847 29 EQVCMFLHALA---HHVKNQTINNRF-----KHSGETISR-FNSI 64 (88)
Q Consensus 29 E~la~FL~i~~---~n~~~r~i~~~F-----~~S~eTisr-f~~V 64 (88)
.+.+|.-+... .+.+..+|...+ +.|..||.| .+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 34444444433 468999999999 788899988 5543
No 140
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=54.69 E-value=12 Score=28.34 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=28.0
Q ss_pred hhHHHHHHHHH-h--ccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 27 VDEQVCMFLHA-L--AHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 27 veE~la~FL~i-~--~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
-.|+-.+-|+. + +.+.++..|+..|+.|.+||.. .+..++.+-
T Consensus 363 ~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 363 EREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp HHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 33444444544 2 2789999999999999999999 888877765
No 141
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=54.45 E-value=7.8 Score=25.53 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=28.8
Q ss_pred HHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 35 LHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 35 L~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
|..++.|.++++|+...+-|..||.. ...+.+-+
T Consensus 158 L~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 158 LGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 45567889999999999999999998 88876654
No 142
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=54.37 E-value=14 Score=21.72 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=18.3
Q ss_pred ccccchhhhhhhcccccchhHh-HHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..+.+..+++..++-|..+++| |++.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445666677777888888888 7775
No 143
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=53.94 E-value=17 Score=21.78 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=28.7
Q ss_pred cchhH-HHHHHHHHhcc-ccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDE-QVCMFLHALAH-HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE-~la~FL~i~~~-n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+ .+-..|+.-+. +.+..+++..++.|..||++ .+..-
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le 75 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME 75 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH
Confidence 44433 33344444432 58999999999999999999 77655
No 144
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=53.85 E-value=12 Score=25.50 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHhcc-ccch--hhhhhhcccccchhHh-HHHHH
Q 046847 26 FVDEQVCMFLHALAH-HVKN--QTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 26 ~veE~la~FL~i~~~-n~~~--r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+|++--.||.++. +.+. .+++.+++.|..||++ .+..-
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le 49 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRME 49 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457888888888764 4555 9999999999999999 77644
No 145
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=53.52 E-value=18 Score=22.21 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=23.5
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++..++.+..||++ .+..-
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4668999999999999999999 77665
No 146
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=53.15 E-value=19 Score=21.52 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=23.2
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
.+.+..+++..++.|..||++ .+..-+
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 468999999999999999999 776653
No 147
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=53.11 E-value=15 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.7
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.|..||++ .+..-
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 357999999999999999999 77765
No 148
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=52.83 E-value=19 Score=21.87 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=22.9
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.|..||++ .+...
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 468999999999999999999 77655
No 149
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.55 E-value=19 Score=21.62 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=23.2
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++..++.|..||++ .+..-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 3468999999999999999999 77655
No 150
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=52.16 E-value=14 Score=21.35 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=22.4
Q ss_pred ccchhhhhhhcccccch-hHh-HHHHH
Q 046847 41 HVKNQTINNRFKHSGET-ISR-FNSIL 65 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eT-isr-f~~Vl 65 (88)
+.+..+++..++.|..| |++ .+..-
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le 56 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLI 56 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHH
Confidence 58999999999999999 999 77655
No 151
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=52.03 E-value=14 Score=24.64 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
++|-.|+.++ ...++..++...+.|.+|||+ +++.=+.+
T Consensus 7 ~~l~~f~~v~-~~~s~s~AA~~L~isq~avS~~i~~LE~~l 46 (306)
T 3fzv_A 7 RQLKYFVTTV-ECGSVAEASRKLYIAQPSISTAVKGLEESF 46 (306)
T ss_dssp HHHHHHHHHH-HSSSHHHHHHHHTCCC-CHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HhCCHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4566666554 456999999999999999999 88764433
No 152
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=51.97 E-value=14 Score=23.34 Aligned_cols=41 Identities=5% Similarity=0.068 Sum_probs=29.6
Q ss_pred cchhH-HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDE-QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE-~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+ .+-.+|+..+.+.+..+++..++.+..||++ .+..-
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44444 3444555555667778999999999999999 77665
No 153
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.95 E-value=36 Score=20.32 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=24.0
Q ss_pred hccccchhhhhhhcccccchhHh-HHHHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-..+.+..+++..++.|..||++ .+...
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~ 77 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLE 77 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 35678999999999999999999 77655
No 154
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=51.93 E-value=18 Score=22.12 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=23.2
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++..++.|..||++ .+..-
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 4568999999999999999999 77655
No 155
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.85 E-value=20 Score=22.14 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=22.5
Q ss_pred ccchhhhhhhcccccchhHh-HHHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+.+..+++..++.|..||++ .+...
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le 83 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLE 83 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 68999999999999999999 77665
No 156
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.77 E-value=18 Score=22.36 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=23.2
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++..++.|..||++ .+..-
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 3468999999999999999999 77655
No 157
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=51.65 E-value=3.1 Score=27.34 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNG 67 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~a 67 (88)
++..++-.+-|+. ..+.+++.|+..++.|..||.+ .+..++.
T Consensus 199 L~~~~r~vl~l~~-~~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRY-YKDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp --------------------------------------------
T ss_pred CCHHHHHHHHHHH-hcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4555555555533 4779999999999999999998 8776643
No 158
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=51.28 E-value=16 Score=22.88 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=23.2
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+...+.+.++..++.|..||++ .+..-
T Consensus 52 ~~~~~~~~la~~l~vs~~tvs~~l~~Le 79 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLA 79 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 4568999999999999999999 77654
No 159
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=50.89 E-value=21 Score=22.00 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.4
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++..++.|..||++ .+..-
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4578999999999999999999 77765
No 160
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=50.86 E-value=15 Score=22.14 Aligned_cols=38 Identities=0% Similarity=0.016 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 26 FVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 26 ~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+..+++-.+|..- +.+..+|+..++.|..||.+ +...-
T Consensus 17 ~~~~~IL~lL~~~--g~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 17 EIVCEAIKTIGIE--GATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp HHHHHHHHHHSSS--TEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556677777743 39999999999999999988 66543
No 161
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.79 E-value=38 Score=20.32 Aligned_cols=27 Identities=4% Similarity=0.101 Sum_probs=23.6
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+...++..++.|..||++ .+..-
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le 75 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELE 75 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 4578999999999999999999 77665
No 162
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=50.68 E-value=17 Score=21.61 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhccccchhhhhhhcc----cccchhHh-HHHHH
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRFK----HSGETISR-FNSIL 65 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F~----~S~eTisr-f~~Vl 65 (88)
+..+-.+||. ..+.+..+|+..++ -|..||++ .+...
T Consensus 12 ~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~ 53 (123)
T 1okr_A 12 EWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLY 53 (123)
T ss_dssp HHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH
Confidence 4456666776 56799999999999 67999998 76654
No 163
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=50.61 E-value=18 Score=21.33 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=15.3
Q ss_pred ccchhhhhhhcccccchhHh-HHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+.+..+++..++-|..+++| |++.
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455566667777777777 7664
No 164
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=50.17 E-value=20 Score=22.54 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=15.7
Q ss_pred chhhhhhhcccccchhHh-HHH
Q 046847 43 KNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~ 63 (88)
+-+.++..|+.|..||.+ +..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 556778899999888866 544
No 165
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=50.17 E-value=20 Score=21.67 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=29.1
Q ss_pred ccchhHHHH-HHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 24 VVFVDEQVC-MFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 24 ~v~veE~la-~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+++..+-.. ..|+. ..+.+..+++...+.+..||++ .+..-
T Consensus 34 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L~ 76 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA-NEPISQKEIALWTKKDTPTVNRIVDVLL 76 (143)
T ss_dssp SSCHHHHHHHHHHHH-HSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 355544332 23333 3678999999999999999999 77765
No 166
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=50.03 E-value=12 Score=23.93 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 35 LHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 35 L~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
|..++.|.+++.|+...+-|..||.. ...+.+.+
T Consensus 151 l~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 151 LQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp HHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34457889999999999999999987 77776654
No 167
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.02 E-value=23 Score=21.16 Aligned_cols=26 Identities=4% Similarity=0.189 Sum_probs=22.6
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++...+.|..||++ .+..-
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 467999999999999999999 77655
No 168
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=49.87 E-value=19 Score=22.57 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=26.8
Q ss_pred cchhH-HHHHHHHHh-ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDE-QVCMFLHAL-AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE-~la~FL~i~-~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+ .+-.+|+.- +.+.+..+++..++.+..||++ .+..-
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 44433 344445554 2589999999999999999999 77654
No 169
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=49.83 E-value=21 Score=21.73 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.7
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.|..||++ .+..-
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 468999999999999999999 77654
No 170
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=49.07 E-value=27 Score=20.08 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=22.2
Q ss_pred cccchhhh----hhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTI----NNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i----~~~F~~S~eTisr-f~~Vl~ 66 (88)
.+.+..++ +..++.|..||++ .+..-+
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35788888 9999999999999 776653
No 171
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=48.79 E-value=23 Score=21.73 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=24.3
Q ss_pred hccccchhhhhhhcccccchhHh-HHHHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-..+.+..+++...+.+..||++ .+...
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le 87 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLI 87 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 34578999999999999999999 77765
No 172
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=48.78 E-value=18 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+++++.- .+.-|...+.+.++..|+.|..||.+ ++..-
T Consensus 14 l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~ 52 (163)
T 2gqq_A 14 IDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLE 52 (163)
T ss_dssp HHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHH
T ss_pred HHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455544 56667888999999999999999998 77753
No 173
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=48.68 E-value=19 Score=21.29 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHhccc-cchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHALAHH-VKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i~~~n-~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
.-|++|.-.+-.|-.| .|.+.++..||....|+.. .++-
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~ 54 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKER 54 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhh
Confidence 4577777778888888 8999999999999999987 6653
No 174
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=48.51 E-value=19 Score=21.94 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=22.7
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.|..||++ .+..-
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999999 77665
No 175
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=48.37 E-value=13 Score=29.28 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=35.0
Q ss_pred ccchhHHHHHHHHHh---ccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 24 VVFVDEQVCMFLHAL---AHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 24 ~v~veE~la~FL~i~---~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
.++..++-.+-|+.. +.+.+++.|+..|+.|.+||.. .+..++.+
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kL 598 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 598 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 456667766666554 2789999999999999999998 88766544
No 176
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=47.74 E-value=20 Score=21.73 Aligned_cols=37 Identities=8% Similarity=0.071 Sum_probs=27.6
Q ss_pred HHHHHHHHHh-ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 29 EQVCMFLHAL-AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~-~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-.+..+|+.- +.+.+..+++..++.+..||++ .+..-
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 78 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS 78 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555542 1568999999999999999999 77654
No 177
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=47.44 E-value=28 Score=19.98 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhc--cccchhhhhhhcccccchhHh-HHHHH
Q 046847 28 DEQVCMFLHALA--HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 28 eE~la~FL~i~~--~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++++--+|-..+ ...+..+|+...+.|..||.+ ....-
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 566666666655 357999999999999999988 65543
No 178
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=47.26 E-value=25 Score=21.37 Aligned_cols=41 Identities=7% Similarity=0.211 Sum_probs=23.4
Q ss_pred cchhH-HHHHHHHHhc-cccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDE-QVCMFLHALA-HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE-~la~FL~i~~-~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+ .+-.+|+.-+ .+.+..+++..++.+..||++ .+..-
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~ 82 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE 82 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 44433 3344444433 578999999999999999999 77665
No 179
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=46.88 E-value=13 Score=25.15 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHhcc-------ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 26 FVDEQVCMFLHALAH-------HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 26 ~veE~la~FL~i~~~-------n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
+.+.++.+|..+.-. +.+...++...+.|..|||| .+..=+
T Consensus 5 ~~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 5 TDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp --CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456778887776432 25699999999999999999 877654
No 180
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=46.66 E-value=27 Score=21.11 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=25.1
Q ss_pred HHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 33 MFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 33 ~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..|+.-+ +.+..+++..++.+..||++ .+..-
T Consensus 38 ~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 38 YTLATEG-SRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp HHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3343333 58999999999999999999 77665
No 181
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=46.50 E-value=6.6 Score=23.34 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.9
Q ss_pred chhhhhhhcccccchhHh-HHHH
Q 046847 43 KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+.++++..|+.|..||++ +...
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 788999999999999988 6553
No 182
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=46.27 E-value=25 Score=21.43 Aligned_cols=40 Identities=5% Similarity=0.238 Sum_probs=28.2
Q ss_pred cchhH-HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDE-QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE-~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+ .+-..|+. ..+.+..+++...+.+..||++ .+...
T Consensus 39 lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 39 LTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp CCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44433 33334443 2458999999999999999999 77665
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=46.09 E-value=4.3 Score=30.54 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 22 DSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
++.+..-.++||||-.--...++.+|+..|+|...||.. .++|=+
T Consensus 368 ~~~~~~~r~i~~yl~r~l~~~s~~~IG~~~~rdhstv~~a~~~i~~ 413 (440)
T 2z4s_A 368 NVKALTARRIGMYVAKNYLKSSLRTIAEKFNRSHPVVVDSVKKVKD 413 (440)
T ss_dssp ----------------------------------------------
T ss_pred CcccchHHHHHHHHHHHHhCCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 456778889999998888899999999999999999987 766643
No 184
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=45.99 E-value=28 Score=20.22 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=17.7
Q ss_pred ccchhhhhhhcccccchhHh-HHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+.+..+++..++-|..+++| |++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45666777777888888877 7775
No 185
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=45.30 E-value=24 Score=21.90 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=26.1
Q ss_pred HHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 31 VCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 31 la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+-..|+.- .+.+..+++..++.+..||++ .+..-
T Consensus 58 vL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le 92 (161)
T 3e6m_A 58 LLSSLSAY-GELTVGQLATLGVMEQSTTSRTVDQLV 92 (161)
T ss_dssp HHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344433 478999999999999999999 77765
No 186
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=44.48 E-value=20 Score=22.21 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhccccchhhhhhhcc----cccchhHh-HHHHH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFK----HSGETISR-FNSIL 65 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~----~S~eTisr-f~~Vl 65 (88)
.|..|-.+||....+.+.++|...++ .+..||++ .+..-
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 45567777887545799999999998 58889988 65543
No 187
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=44.37 E-value=25 Score=23.13 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=23.0
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...+..+++..|+.|..||.| +...-+
T Consensus 35 ~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 35 EPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 348999999999999999999 886543
No 188
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=44.03 E-value=6.1 Score=24.12 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=18.9
Q ss_pred chhhhhhhcccccchhHh-HHHH
Q 046847 43 KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+.+.++..|+.|..||.+ +...
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 788999999999999987 6653
No 189
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=43.41 E-value=21 Score=22.19 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=28.0
Q ss_pred CccchhHHHHHHHHH--------hcccc-chhhhhhhcccccchhHh-HHHH
Q 046847 23 SVVFVDEQVCMFLHA--------LAHHV-KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 23 ~~v~veE~la~FL~i--------~~~n~-~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..+++-+||+=.|-- .|.-. +-|.++..|+.|..||.+ +...
T Consensus 11 s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 345666666655532 33334 678899999999999976 5543
No 190
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=43.32 E-value=33 Score=21.80 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcc--ccchhhhhhhcccccchhHh-HHHHH
Q 046847 29 EQVCMFLHALAH--HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~~~--n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-.+-..|+.-+. +.+..+++...+.+..||++ .+..-
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le 111 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL 111 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555443 38999999999999999999 77765
No 191
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=42.33 E-value=38 Score=19.85 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhc--cccchhhhhhhcccccchhHh-HHHHH
Q 046847 27 VDEQVCMFLHALA--HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 27 veE~la~FL~i~~--~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.++++--+|---+ ...+...|+..++.|..||.+ ....-
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3556655555444 357899999999999998877 55543
No 192
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=42.16 E-value=19 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=16.1
Q ss_pred ccchhhhhhhcccccchhHh-HHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+.+..+++..++-|..+++| |++.
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 23 PLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34556667777777777777 7765
No 193
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=41.99 E-value=19 Score=23.80 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
++|-.|+-+ +...++..++.+.+.|.+|||+ +++.=+.+
T Consensus 4 ~~l~~f~~v-~~~gs~s~AA~~L~isq~avS~~i~~LE~~l 43 (294)
T 1ixc_A 4 RQLKYFIAV-AEAGNMAAAAKRLHVSQPPITRQMQALEADL 43 (294)
T ss_dssp HHHHHHHHH-HHHSSHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHcCCHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 355556544 4457999999999999999999 88764443
No 194
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=41.89 E-value=27 Score=23.89 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHhcc--ccchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHALAH--HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i~~~--n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+++..+.|.-+.-.+ ..+..+|+...+-+.+||+| .+..
T Consensus 6 sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L 47 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL 47 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 466666676555443 58999999999999999999 6543
No 195
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=41.80 E-value=19 Score=24.40 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHhcc-ccch--hhhhhhcccccchhHh-HHHHH
Q 046847 26 FVDEQVCMFLHALAH-HVKN--QTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 26 ~veE~la~FL~i~~~-n~~~--r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+|..-..||.++. +.+. .+++.+++.|..||++ .+..-
T Consensus 6 ~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 49 (226)
T 2qq9_A 6 ATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME 49 (226)
T ss_dssp HHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356777788888743 3444 8999999999999999 77643
No 196
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=41.70 E-value=25 Score=21.73 Aligned_cols=26 Identities=12% Similarity=0.342 Sum_probs=22.9
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++..++.+..||++ .+...
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 458999999999999999999 77765
No 197
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=41.67 E-value=19 Score=21.88 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=23.1
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+..+++...+.+..||++ .+..-
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 3467899999999999999999 77665
No 198
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=41.36 E-value=31 Score=21.64 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=29.0
Q ss_pred ccchhHH-HHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 24 VVFVDEQ-VCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 24 ~v~veE~-la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+++..+- +-..|+. ..+.+..+++...+.|..||++ .+..-
T Consensus 42 ~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp SCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3554443 3333443 3478999999999999999999 77654
No 199
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=41.23 E-value=17 Score=22.35 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=23.7
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
+...++++++..++-|..||++ .+..-+
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3457999999999999999999 877653
No 200
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=41.12 E-value=19 Score=22.65 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=23.9
Q ss_pred ccchhhhhhhcccccchhHh-HHHHHHHHHHhhhhhccCCCCC
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSILNGVLELQHILLKSPKPM 82 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~L~~~~ik~p~~~ 82 (88)
+.+..+++...+.+..||++ .+..- ...||+-++|.
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le------~~glVr~~~~~ 88 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMR------RDGLVRVMAGA 88 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHH------HTTSBC-----
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHH------HCCCEEeeCCC
Confidence 36899999999999999999 77754 34566555543
No 201
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=41.11 E-value=25 Score=20.92 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhccccchhhhhhhccc----ccchhHh-HHHHH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFKH----SGETISR-FNSIL 65 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~~----S~eTisr-f~~Vl 65 (88)
.|..|-.+||.-+ +.+.++|+..++. +..||++ .+..-
T Consensus 11 ~q~~vL~~L~~~~-~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (126)
T 1sd4_A 11 AEWDVMNIIWDKK-SVSANEIVVEIQKYKEVSDKTIRTLITRLY 53 (126)
T ss_dssp HHHHHHHHHHHSS-SEEHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 4557778888854 6899999999984 7889988 66543
No 202
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=40.64 E-value=24 Score=23.47 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
++|-.|+- ++...++..++...+.|.++||+ .++.=+.+
T Consensus 6 ~~l~~f~~-v~~~gs~t~AA~~L~isq~avS~~i~~LE~~l 45 (306)
T 3hhg_A 6 EELTVFVQ-VVESGSFSRAAEQLAMANSAVSRIVKRLEEKL 45 (306)
T ss_dssp HHHHHHHH-HHHSSSHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 35556654 45567999999999999999999 88754443
No 203
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=40.48 E-value=12 Score=19.43 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=20.8
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+-..+.+.++++...+.|..||++ .+
T Consensus 10 r~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 10 REKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345677888899999999999988 65
No 204
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=40.20 E-value=13 Score=24.21 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=27.1
Q ss_pred HHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 35 LHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 35 L~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
|..++.+.++++|+...+.|..||.. ...+.+
T Consensus 168 L~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 168 IKLLGSGASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp HHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44567889999999999999999998 887654
No 205
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=40.20 E-value=33 Score=21.46 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=23.7
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...+++.++..++-|.+||++ .+...+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 458999999999999999999 887754
No 206
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=39.88 E-value=19 Score=22.51 Aligned_cols=28 Identities=7% Similarity=0.280 Sum_probs=24.1
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
....+++.++..++-|..||++ .+...+
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3458999999999999999999 887653
No 207
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.62 E-value=33 Score=20.93 Aligned_cols=26 Identities=4% Similarity=0.010 Sum_probs=22.5
Q ss_pred cccchhhhhhhcccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+.+..+++...+.+..||++ .+..-
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le 82 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMD 82 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357999999999999999999 77655
No 208
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=39.36 E-value=19 Score=20.32 Aligned_cols=35 Identities=6% Similarity=0.190 Sum_probs=26.3
Q ss_pred hHHHHHHH--HHhccccchhhhhhhcccccchhHh-HH
Q 046847 28 DEQVCMFL--HALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 28 eE~la~FL--~i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
.++++-.| +.-..+.+..+++...+.|..||++ -+
T Consensus 15 ~~~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 15 ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34455444 3466788999999999999999998 54
No 209
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=39.07 E-value=27 Score=24.19 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=26.8
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
++..|.-..+.-.+..+.+...|+.++|.|..||++
T Consensus 118 L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~ 153 (230)
T 1vz0_A 118 LSPVEEARGYQALLEMGLTQEEVARRVGKARSTVAN 153 (230)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHH
Confidence 444444333444447889999999999999999998
No 210
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=38.49 E-value=33 Score=21.31 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=23.4
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...+++.++..++.|.+||++ .+...+
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 458999999999999999999 887653
No 211
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=38.37 E-value=40 Score=22.62 Aligned_cols=16 Identities=6% Similarity=0.237 Sum_probs=12.4
Q ss_pred hhhhhhcccccchhHh
Q 046847 45 QTINNRFKHSGETISR 60 (88)
Q Consensus 45 r~i~~~F~~S~eTisr 60 (88)
+.++.+||.|..||-.
T Consensus 32 ~~La~~lgVSRtpVRE 47 (239)
T 2di3_A 32 RALSETLGVSRSSLRE 47 (239)
T ss_dssp HHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
Confidence 4567899999888854
No 212
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=38.35 E-value=30 Score=22.65 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 33 MFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 33 ~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
-.+..++.+.+++.|+..++.|.+||.. +..+++-+
T Consensus 205 ~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~~kl 241 (258)
T 3p7n_A 205 EVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKL 241 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3444566889999999999999999999 88887644
No 213
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=38.30 E-value=19 Score=22.07 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHhcc-----ccchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHALAH-----HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i~~~-----n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..|.++|=|+ +.| +.+-++++..=+.|..||.| .+++
T Consensus 21 ~~e~~ia~yi--l~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 21 PSERKLADYI--LAHPHXAIESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp HHHHHHHHHH--HHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4567776654 444 68999999999999999998 6553
No 214
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=38.24 E-value=33 Score=22.20 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=29.2
Q ss_pred cchhHHH-HHHHHHh-ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDEQV-CMFLHAL-AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE~l-a~FL~i~-~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+-. -.+|+.. ..+.+..+++..++.|..||++ .+..-
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le 82 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE 82 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5544433 2334432 4579999999999999999999 77654
No 215
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=37.53 E-value=15 Score=19.38 Aligned_cols=24 Identities=4% Similarity=0.220 Sum_probs=18.7
Q ss_pred HhccccchhhhhhhcccccchhHh
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
+...+.+..+++...+.|..||++
T Consensus 10 r~~~glsq~~lA~~~gis~~~i~~ 33 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQ 33 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHH
Confidence 345667788888888888888887
No 216
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=37.48 E-value=30 Score=21.07 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=17.8
Q ss_pred cccchhhhhhhcccccchhHh-HHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
.+.+..+++..++-|..+++| |++.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345666677777777777777 7775
No 217
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=37.41 E-value=51 Score=19.60 Aligned_cols=48 Identities=8% Similarity=0.097 Sum_probs=32.2
Q ss_pred CccchhHHHHHHHHHhc---cccchhhhhhhcccccchhHh-HHHHHHHHHHhhhhhcc
Q 046847 23 SVVFVDEQVCMFLHALA---HHVKNQTINNRFKHSGETISR-FNSILNGVLELQHILLK 77 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~---~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~L~~~~ik 77 (88)
..++.+|.+ ++-++.. .+...++++.+.+-+..||++ ....- ...||+
T Consensus 16 ~~Lt~~q~~-Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE------~kglIk 67 (91)
T 2dk5_A 16 KGSDNQEKL-VYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE------SKKLIK 67 (91)
T ss_dssp CCSCSSHHH-HHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHH------HTTSEE
T ss_pred cCCCHHHHH-HHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHH------HCCCEE
Confidence 445554433 3333332 269999999999999999987 55543 567776
No 218
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=36.30 E-value=16 Score=19.37 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=19.0
Q ss_pred hccccchhhhhhhcccccchhHh-HH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
-..+.+..+++...+.|..||++ .+
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 44567788888888888888887 54
No 219
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=36.16 E-value=30 Score=22.25 Aligned_cols=37 Identities=5% Similarity=-0.077 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
.++-.|+-++-+ .++..++...+.|..+||+ +.+.=+
T Consensus 27 ~~L~~f~av~e~-gS~s~AA~~L~iSqsavS~~I~~LE~ 64 (135)
T 2ijl_A 27 GKVELMQLIAET-GSISAAGRAMDMSYRRAWLLVDALNH 64 (135)
T ss_dssp HHHHHHHHHHHH-SCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467777766655 6999999999999999999 877543
No 220
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=35.65 E-value=29 Score=23.33 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHhccccchhhhhhhcccccchhHh
Q 046847 26 FVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 26 ~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
++|+..| |.-.+..+.+...|+.++|.|..+|++
T Consensus 38 piE~A~a-~~~L~~~G~t~eeiA~~lG~s~s~V~~ 71 (178)
T 1r71_A 38 PREIADF-IGRELAKGKKKGDIAKEIGKSPAFITQ 71 (178)
T ss_dssp HHHHHHH-HHHHHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHH
Confidence 4455444 444555689999999999999999998
No 221
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=35.63 E-value=29 Score=20.82 Aligned_cols=12 Identities=0% Similarity=-0.006 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhC
Q 046847 5 TFGLLFELLCSD 16 (88)
Q Consensus 5 ~F~~L~~~L~~~ 16 (88)
...++++++..+
T Consensus 8 ~~~~~~~~i~~~ 19 (120)
T 3mkl_A 8 MRTRVCTVINNN 19 (120)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHh
Confidence 344555555544
No 222
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=35.48 E-value=14 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=17.4
Q ss_pred chhhhhhhcccccchhHh-HHHH
Q 046847 43 KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+-+.++..|+.|..||.+ +...
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 677888999999999976 5543
No 223
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=35.25 E-value=30 Score=21.93 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhccccchhhhhhhccc-ccchhHh-HHH
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRFKH-SGETISR-FNS 63 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F~~-S~eTisr-f~~ 63 (88)
+|...-.+-.++.+.+-+.|...++. |.+||.+ .++
T Consensus 15 ~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 15 PEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp TTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 44444566667899999999999999 9999998 766
No 224
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=35.22 E-value=23 Score=22.17 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.6
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...++..++..++-|.+||++ .+...+
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 458999999999999999999 887654
No 225
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=34.99 E-value=39 Score=20.34 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=22.0
Q ss_pred ccccc--hhhhhhhc-ccccchhHh-HHHHH
Q 046847 39 AHHVK--NQTINNRF-KHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~--~r~i~~~F-~~S~eTisr-f~~Vl 65 (88)
....+ +.+++... +-|..|+|+ .+..-
T Consensus 38 ~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le 68 (111)
T 3df8_A 38 NGSTRQNFNDIRSSIPGISSTILSRRIKDLI 68 (111)
T ss_dssp SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHccCCCHHHHHHHHHHHH
Confidence 34456 89999999 999999999 77654
No 226
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=34.88 E-value=30 Score=23.17 Aligned_cols=39 Identities=5% Similarity=0.087 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
++|-.|+- ++...++..++.+.+.|.+|||+ .++.=+.+
T Consensus 5 ~~L~~f~~-v~~~gs~t~AA~~L~isq~avS~~i~~LE~~l 44 (305)
T 3fxq_A 5 QTLQALIC-IEEVGSLRAAAQLLHLSQPALSAAIQQLEDEL 44 (305)
T ss_dssp HHHHHHHH-HHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 45556654 45557999999999999999999 88764443
No 227
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.40 E-value=19 Score=22.02 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=22.5
Q ss_pred HHhccccchhhhhhhcccccchhHh
Q 046847 36 HALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 36 ~i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
+.-..+.+.++++..++.|..|||+
T Consensus 79 ~R~~~glsq~~la~~~g~s~~~i~~ 103 (133)
T 3o9x_A 79 VRKKLSLTQKEASEIFGGGVNAFSR 103 (133)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHH
Confidence 4567789999999999999999999
No 228
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=34.32 E-value=19 Score=22.40 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=22.8
Q ss_pred ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..++.+++..++-|.+||++ .+...+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47999999999999999999 887653
No 229
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=34.17 E-value=26 Score=23.22 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=32.3
Q ss_pred hccccchhhhhhhcccccchhHh-HHHHHHHHHHhhhhhccC
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNSILNGVLELQHILLKS 78 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~L~~~~ik~ 78 (88)
.+.+.+.+++..-++.|.+||.+ ++++.+.+..+-+++++.
T Consensus 156 ~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~~~ 197 (207)
T 1c9b_A 156 SAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKF 197 (207)
T ss_dssp SSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSCCC
T ss_pred HCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHHcc
Confidence 44556788999999999999999 999988777655665554
No 230
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=34.15 E-value=21 Score=19.68 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=21.7
Q ss_pred HHhccccchhhhhhhcccccchhHh
Q 046847 36 HALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 36 ~i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
..-..+.+..+++...+.|..||++
T Consensus 19 ~R~~~gltq~elA~~~gvs~~tis~ 43 (73)
T 3fmy_A 19 VRKKLSLTQKEASEIFGGGVNAFSR 43 (73)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHH
Confidence 3556788999999999999999998
No 231
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=33.85 E-value=15 Score=19.17 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=19.8
Q ss_pred hccccchhhhhhhcccccchhHh-HH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
-..+.+..+++...+.|..||++ .+
T Consensus 15 ~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 44567888888888999999988 54
No 232
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=33.70 E-value=21 Score=22.13 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=18.1
Q ss_pred chhhhhhhcccccchhHh-HHHH
Q 046847 43 KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+-+.++..|+.|..||.+ +...
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L 61 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQEL 61 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 578899999999999977 6554
No 233
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.29 E-value=36 Score=22.92 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhc---cccchhhhhhhcccccchhHh-HHHHH
Q 046847 28 DEQVCMFLHALA---HHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 28 eE~la~FL~i~~---~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+|.-.-.+|.+. ...+..+++.+++.|..||++ .+..-
T Consensus 4 ~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 4 KEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp HHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 344444455543 457899999999999999999 77654
No 234
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=32.99 E-value=40 Score=21.32 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.3
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...+++.++..++-|..||++ .+...+
T Consensus 23 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 23 GRLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 348999999999999999999 887653
No 235
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=32.56 E-value=19 Score=19.13 Aligned_cols=26 Identities=8% Similarity=-0.066 Sum_probs=20.8
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+-..+.+.++++...+.|..||++ -+
T Consensus 22 r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 22 RTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 345678888899999999999988 54
No 236
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=32.52 E-value=36 Score=22.90 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHhccc--cchhhhhhhcccccchhHh-HHHH
Q 046847 24 VVFVDEQVCMFLHALAHH--VKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 24 ~v~veE~la~FL~i~~~n--~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
.|.-+|+-..-|-.+..| .+..+++..|+.|.+||-| ..+.
T Consensus 7 ~m~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL 50 (190)
T 4a0z_A 7 KLKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYL 50 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHh
Confidence 355566666666666655 4788899999999999999 8875
No 237
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.40 E-value=19 Score=19.40 Aligned_cols=23 Identities=4% Similarity=0.036 Sum_probs=16.0
Q ss_pred hccccchhhhhhhcccccchhHh
Q 046847 38 LAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr 60 (88)
-..+.+..+++...+.|..||++
T Consensus 17 ~~~g~sq~~lA~~~gis~~~i~~ 39 (78)
T 3b7h_A 17 TQQNLTINRVATLAGLNQSTVNA 39 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHH
Confidence 34556677777777777777777
No 238
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=32.36 E-value=98 Score=21.70 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHhhCcCCcCCCccchhHHHHHHHHHhccccchhhhhhhccc
Q 046847 11 ELLCSDERLKTDSVVFVDEQVCMFLHALAHHVKNQTINNRFKH 53 (88)
Q Consensus 11 ~~L~~~~~L~~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~ 53 (88)
..|.+++.+.+. ..+.+|-||+.......-..|++..+.
T Consensus 43 ~~L~~~g~l~~~----~~~~iA~fL~~~~~~L~k~~iGeyLg~ 81 (230)
T 1ku1_A 43 PMLIEKGFIASD----SDKDIAEFLFNNNNRMNKKTIGLLLCH 81 (230)
T ss_dssp HHHHHTTSSSCS----SHHHHHHHHHHTTTTSCHHHHHHHHTC
T ss_pred HHHHHCCCcCCC----CHHHHHHHHHHcCcccCHHHHHHHHcC
Confidence 346667666542 248999999988777888888888874
No 239
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=32.34 E-value=20 Score=19.34 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=20.3
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+...+.+..+++...+.|..||++ .+
T Consensus 19 r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 19 RTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 345677888888888888888888 54
No 240
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=32.32 E-value=18 Score=22.51 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=18.1
Q ss_pred chhhhhhhcccccchhHh-HHHH
Q 046847 43 KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+-+.++..|+.|..||.+ +...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 778899999999999977 6553
No 241
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=32.18 E-value=20 Score=22.26 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=17.4
Q ss_pred chhhhhhhcccccchhHh-HHHH
Q 046847 43 KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+-+.++..|+.|..||.+ +...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 778899999999999977 6553
No 242
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=32.17 E-value=41 Score=20.90 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=23.6
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...++..++..++-|.+||++ .+...+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 458999999999999999999 887654
No 243
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.84 E-value=19 Score=20.26 Aligned_cols=26 Identities=4% Similarity=-0.023 Sum_probs=21.8
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+-..+.+.++++.+.+.|..||++ .+
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 455678889999999999999999 64
No 244
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=31.47 E-value=21 Score=23.86 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
++|-.|+- ++...++..++.+.+.|.+|||+ +++.=+
T Consensus 13 ~~L~~f~~-v~~~gs~s~AA~~L~isq~avS~~I~~LE~ 50 (310)
T 2esn_A 13 NLLLVFDA-LYRHRNVGTAASELAISASAFSHALGRLRQ 50 (310)
T ss_dssp THHHHHHH-HHHHSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 46666664 45557999999999999999999 887533
No 245
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.29 E-value=18 Score=19.42 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=18.8
Q ss_pred hccccchhhhhhhcccccchhHh-HH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
-..+.+.++++...+.|..||++ .+
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34567778888888888888887 54
No 246
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=31.02 E-value=43 Score=20.19 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhccccchhhhhhhccc----ccchhHh-HHHHH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFKH----SGETISR-FNSIL 65 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~~----S~eTisr-f~~Vl 65 (88)
.|..|-.+||.-+ +.+.++|.+.++. +..||.+ .+...
T Consensus 36 ~e~~VL~~L~~~~-~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 36 AELIVMRVIWSLG-EARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp SCSHHHHHHHHHS-CEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 4567888899854 7999999999975 5678877 55443
No 247
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.02 E-value=14 Score=20.17 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=18.3
Q ss_pred ccchhhhhhhcccccchhHh-H
Q 046847 41 HVKNQTINNRFKHSGETISR-F 61 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f 61 (88)
+.+...++...|.|..|||+ .
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 34788999999999999999 6
No 248
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=30.98 E-value=25 Score=19.47 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=21.6
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+-..+.+..+++...+.|..||++ .+
T Consensus 21 r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 21 RQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 445678889999999999999998 65
No 249
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=30.96 E-value=64 Score=19.15 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=22.6
Q ss_pred cccchhhhhhhc-ccccchhHh-HHHHH
Q 046847 40 HHVKNQTINNRF-KHSGETISR-FNSIL 65 (88)
Q Consensus 40 ~n~~~r~i~~~F-~~S~eTisr-f~~Vl 65 (88)
.+.++.+++... +.|..|+++ .+..-
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le 61 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREME 61 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 568999999999 999999999 76654
No 250
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.81 E-value=63 Score=21.36 Aligned_cols=40 Identities=10% Similarity=-0.037 Sum_probs=29.0
Q ss_pred cchhH-HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDE-QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE-~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+ .+-.+||.- .+.+..+++..++.+..||++ .+..-
T Consensus 46 Lt~~q~~iL~~L~~~-~~~t~~eLa~~l~i~~stvs~~l~~Le 87 (207)
T 2fxa_A 46 LNINEHHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLE 87 (207)
T ss_dssp CCHHHHHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44433 344445544 479999999999999999999 76654
No 251
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=30.58 E-value=37 Score=24.40 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=21.8
Q ss_pred ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..+..+++..|+.|..||.| ++..-+
T Consensus 19 ~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 19 FHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 36888899999999999999 876543
No 252
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=30.20 E-value=37 Score=21.73 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHhccc----cchhhhhhhcc---cccchhHh-HHHHHHHHH
Q 046847 35 LHALAHH----VKNQTINNRFK---HSGETISR-FNSILNGVL 69 (88)
Q Consensus 35 L~i~~~n----~~~r~i~~~F~---~S~eTisr-f~~Vl~ai~ 69 (88)
|..++.| .++.+|+.... .|..||.. ...+.+.+.
T Consensus 154 l~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 154 LLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp HHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 3444455 99999999998 89999998 888877664
No 253
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=30.09 E-value=36 Score=16.89 Aligned_cols=23 Identities=9% Similarity=0.352 Sum_probs=16.9
Q ss_pred cccccchhHh-HHHHHHHHHHhhh
Q 046847 51 FKHSGETISR-FNSILNGVLELQH 73 (88)
Q Consensus 51 F~~S~eTisr-f~~Vl~ai~~L~~ 73 (88)
|.|.+-...+ .+.|.++|.+.+.
T Consensus 1 fnrggynfgksvrhvid~igsvag 24 (33)
T 2jui_A 1 FNRGGYNFGKSVRHVVDAIGSVAG 24 (33)
T ss_dssp CCSCSCCSSHHHHHHHHHHHHGGG
T ss_pred CCccccccchhHHHHHHHHhhHHH
Confidence 4566666777 8889999987653
No 254
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=29.99 E-value=63 Score=20.98 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHHH-hh
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVLE-LQ 72 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~~-L~ 72 (88)
+++||+|-| +..|.+... -.|.+-.|+|.+ |-++|+.|-. |+
T Consensus 86 is~eEavei----lk~nl~~dv--~hfsrkKE~iG~A~~~ll~~i~eRL~ 129 (133)
T 1ztd_A 86 ISEREAVEI----IKKNLYPEV--LDFSKKKEAIGRALAPLLVIISERLY 129 (133)
T ss_dssp SCHHHHHHH----HHTTCCGGG--GCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHH----HHhcCcHhh--cchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 889998866 446655444 358899999999 9999998864 54
No 255
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=29.71 E-value=45 Score=23.08 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHH
Q 046847 27 VDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 27 veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
.+|.---.+|.+....+.++++.+.+.|..||+. .+..
T Consensus 16 s~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL 54 (200)
T 2p8t_A 16 TVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKL 54 (200)
T ss_dssp CHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566666677778889999999999999999988 6653
No 256
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=29.70 E-value=39 Score=19.39 Aligned_cols=21 Identities=0% Similarity=-0.013 Sum_probs=18.4
Q ss_pred chhhhhhhcccccchhHh-HHH
Q 046847 43 KNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~~ 63 (88)
+...++...+.|..|||+ .+.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 488899999999999999 774
No 257
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=29.61 E-value=23 Score=18.96 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.2
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+-..+.+..+++...+.|..||++ .+
T Consensus 19 r~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345678889999999999999988 55
No 258
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=29.60 E-value=31 Score=23.79 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=21.1
Q ss_pred HHhcccc-chhhhhhhcccccchhHh-HHHH
Q 046847 36 HALAHHV-KNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 36 ~i~~~n~-~~r~i~~~F~~S~eTisr-f~~V 64 (88)
|-.|.-. +-+.++..|+.|..||.+ +.+.
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr~Al~~L 60 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVRQALREL 60 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344445 667888999999999977 5554
No 259
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=29.58 E-value=55 Score=19.30 Aligned_cols=27 Identities=0% Similarity=0.142 Sum_probs=22.7
Q ss_pred ccccchhhhhhhc-ccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRF-KHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F-~~S~eTisr-f~~Vl 65 (88)
....++.+++... +-|..|+++ .+..-
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le 53 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELE 53 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3558999999999 999999999 77654
No 260
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=29.50 E-value=26 Score=23.41 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.1
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
++|-.|+ .++...++..++.+.+.|.+|||+ .++.=+.+
T Consensus 9 ~~L~~f~-~v~~~gs~s~AA~~L~isq~avS~~i~~LE~~l 48 (303)
T 3isp_A 9 PQLAALA-AVVELGSFDAAAERLHVTPSAVSQRIKSLEQQV 48 (303)
T ss_dssp HHHHHHH-HHHHHTCHHHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 4566666 455668999999999999999999 88764443
No 261
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=29.18 E-value=79 Score=22.66 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=24.8
Q ss_pred HhccccchhhhhhhcccccchhHh-HHHH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
....+.+-.+++..++-|..|++| |++.
T Consensus 317 ~~~~~~~~~~~a~~~~~s~~~l~r~f~~~ 345 (412)
T 4fe7_A 317 HACKGIKVDQVLDAVGISRSNLEKRFKEE 345 (412)
T ss_dssp HGGGTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345678999999999999999999 9987
No 262
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.15 E-value=20 Score=19.64 Aligned_cols=24 Identities=4% Similarity=0.177 Sum_probs=16.8
Q ss_pred HhccccchhhhhhhcccccchhHh
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
+...+.+.++++..-+.|..||++
T Consensus 11 r~~~glsq~~lA~~~gis~~~i~~ 34 (77)
T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCN 34 (77)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHH
Confidence 344566777777777777777777
No 263
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=29.11 E-value=89 Score=22.29 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcccc---chhhhhhhcccccchhHh-HHHHHHHHHH
Q 046847 28 DEQVCMFLHALAHHV---KNQTINNRFKHSGETISR-FNSILNGVLE 70 (88)
Q Consensus 28 eE~la~FL~i~~~n~---~~r~i~~~F~~S~eTisr-f~~Vl~ai~~ 70 (88)
|-=++|..|.+.++. +-....++|+-|.+|||+ ..-|=+++-.
T Consensus 7 ~rl~~~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~ 53 (291)
T 1o57_A 7 GRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQ 53 (291)
T ss_dssp HHHHHHHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHh
Confidence 344566777777776 788899999999999999 7766555544
No 264
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=28.99 E-value=22 Score=19.18 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=21.7
Q ss_pred hccccchhhhhhhcccccchhHh-HHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
-..+.+..+++..-+.|..||++ .+-
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45678889999999999999999 653
No 265
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=28.92 E-value=26 Score=22.90 Aligned_cols=35 Identities=11% Similarity=0.176 Sum_probs=27.5
Q ss_pred HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
+|-.|+ .++...++..++...+.|.++||+ .++.=
T Consensus 5 ~l~~f~-~v~~~~s~t~AA~~L~isq~avS~~i~~LE 40 (291)
T 3szp_A 5 DLNLFR-LVVENGSYTSTSKKTMIPVATITRRIQALE 40 (291)
T ss_dssp HHHHHH-HHHHHSSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444 566678999999999999999999 88753
No 266
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=28.65 E-value=59 Score=21.47 Aligned_cols=40 Identities=8% Similarity=0.183 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhccc---cchhhhhhhcc-cccchhHh-HHHHHH
Q 046847 27 VDEQVCMFLHALAHH---VKNQTINNRFK-HSGETISR-FNSILN 66 (88)
Q Consensus 27 veE~la~FL~i~~~n---~~~r~i~~~F~-~S~eTisr-f~~Vl~ 66 (88)
-..+.+|+-+.++|. .+-..+...++ -|..||+| .+...+
T Consensus 28 ~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~e 72 (151)
T 3u1d_A 28 HETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVD 72 (151)
T ss_dssp CHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 346778888888864 46677888887 89999998 766543
No 267
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=28.46 E-value=54 Score=22.28 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHhcc--ccchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHALAH--HVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i~~~--n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+++..+.+.-+.-.+ ..+..+|+...+-+.+|++| .+..
T Consensus 4 sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L 45 (241)
T 2xrn_A 4 VIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINAL 45 (241)
T ss_dssp HHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345555555444433 47999999999999999999 5544
No 268
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=28.33 E-value=25 Score=19.60 Aligned_cols=28 Identities=4% Similarity=-0.098 Sum_probs=20.3
Q ss_pred HHhccccchhhhhhhcccccchhHh-HHH
Q 046847 36 HALAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 36 ~i~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
+.-..+.+.++++.+-+.|..||++ -+.
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4455677778888888888888887 543
No 269
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=28.10 E-value=43 Score=20.44 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=29.6
Q ss_pred chhHHHHHHHHH---hccccchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHA---LAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i---~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
..|.++|=|+.- -..+.+-++++..-+.|..||.| .+++
T Consensus 17 ~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 17 KNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 457777765542 12368999999999999999999 6665
No 270
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=28.09 E-value=49 Score=23.06 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=23.5
Q ss_pred HHHHHHHHHhccccchhhhhhh----cc---cccchhHh-HHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNR----FK---HSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~----F~---~S~eTisr-f~~Vl 65 (88)
+.=+++++....+.+.+.++.. |+ .|..||.+ ++...
T Consensus 10 ~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~ 54 (345)
T 3hot_A 10 QTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFK 54 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Confidence 3334455555555555555555 66 99999999 88753
No 271
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=28.04 E-value=44 Score=22.57 Aligned_cols=37 Identities=0% Similarity=-0.013 Sum_probs=28.1
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
-++.|.......+.+..+++..++.|..||++ .+..-
T Consensus 16 ~rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk~Le 53 (202)
T 2p4w_A 16 TRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILE 53 (202)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34445444455678999999999999999999 76654
No 272
>2b19_A Neuropeptide K, NPK; helix, 3 10 helix, lipid induced conformation, DPC micelles; NMR {Synthetic}
Probab=27.87 E-value=33 Score=17.40 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHhcccc
Q 046847 25 VFVDEQVCMFLHALAHHV 42 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~ 42 (88)
.++|+|||..--.-||++
T Consensus 4 ssiekqvallkalyghgq 21 (36)
T 2b19_A 4 SSIEKQVALLKALYGHGQ 21 (36)
T ss_dssp GGGGGGHHHHHHHHGGGH
T ss_pred hhHHHHHHHHHHHhccCc
Confidence 578999998766666654
No 273
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=27.80 E-value=51 Score=21.07 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHhccc----cchhhhhhhcc-----cccchhHh-HHHHHHHHHH
Q 046847 35 LHALAHH----VKNQTINNRFK-----HSGETISR-FNSILNGVLE 70 (88)
Q Consensus 35 L~i~~~n----~~~r~i~~~F~-----~S~eTisr-f~~Vl~ai~~ 70 (88)
|..++.| .++.+|+.... .|..||.. ...+.+.+..
T Consensus 152 L~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 152 LTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp HHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 4445555 99999999998 89999988 8888877753
No 274
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=27.61 E-value=63 Score=21.16 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=21.0
Q ss_pred ccccchhhhhhhcccccchhHh-HHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
|...+.++++..|+-|..||++ .+..
T Consensus 22 g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 22 GYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 4568999999999999888877 5543
No 275
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.54 E-value=1.2e+02 Score=19.01 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhhCcCCcCCCccchhHHHHHHHHHhccccchhhhhhhcccccchhHh--HHHHHHHHH
Q 046847 3 RKTFGLLFELLCSDERLKTDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR--FNSILNGVL 69 (88)
Q Consensus 3 ~~~F~~L~~~L~~~~~L~~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr--f~~Vl~ai~ 69 (88)
...-..+-+.|+.. |++.|. --+++.-.|+--..+.+-.+|.......+.+||+ +-..|+.+.
T Consensus 3 ~~~~~~~~~~l~~~-g~r~T~---qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 3 AHELKEALETLKET-GVRITP---QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp -CHHHHHHHHHHHT-TCCCCH---HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 33344455667765 456552 2233333344444568888888888443333333 334444444
No 276
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=27.08 E-value=80 Score=19.99 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.2
Q ss_pred cchhhhhhhcccccchhHh-HHHHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+...++.+.+.|..+|.+ ++...
T Consensus 52 ps~~~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 52 PTPNQLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp CCHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5889999999999999988 77765
No 277
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.74 E-value=28 Score=22.74 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=23.7
Q ss_pred cccchhhhhhhcccccchhHh-HHHHHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
...++++++..++-|..||++ .+...+
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 458999999999999999999 887754
No 278
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=26.64 E-value=36 Score=23.77 Aligned_cols=35 Identities=6% Similarity=0.124 Sum_probs=26.5
Q ss_pred HHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 32 CMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 32 a~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
.|.-+......+...++..++-|..|||+ .+...+
T Consensus 16 ~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~ 51 (232)
T 2qlz_A 16 DLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMER 51 (232)
T ss_dssp HHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34333344668889999999999999999 776654
No 279
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=26.52 E-value=30 Score=19.57 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.6
Q ss_pred HhccccchhhhhhhcccccchhHh
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
....+.+..+++...+.|..|||+
T Consensus 23 R~~~gltq~elA~~~gis~~~is~ 46 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAK 46 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHH
Confidence 456788889999999999999988
No 280
>2o5h_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 1.90A {Neisseria meningitidis} SCOP: d.363.1.1
Probab=26.43 E-value=54 Score=21.63 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhhCcCCcC---C--CccchhHHHHHHHHH
Q 046847 3 RKTFGLLFELLCSDERLKT---D--SVVFVDEQVCMFLHA 37 (88)
Q Consensus 3 ~~~F~~L~~~L~~~~~L~~---t--~~v~veE~la~FL~i 37 (88)
+..|+.|-..|-..+.|+= . ..-|++|||.||=-.
T Consensus 52 K~~FF~ll~kLL~eG~iKLa~~G~fl~Gs~~EqVe~fR~~ 91 (136)
T 2o5h_A 52 TEAFFILFKELLRRGHLKLQRDGQIIGHTPEEWEQIFREV 91 (136)
T ss_dssp HHHHHHHHHHHHHTTSEEEEETTEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcEEecCCCeeccCCHHHHHHHHHHH
Confidence 4667777777766555532 1 234788888887533
No 281
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.35 E-value=28 Score=19.77 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHhccccchhhhhhhcccccchhHh-HHH
Q 046847 26 FVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 26 ~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
++-+.|.- ++-..+.+..+++..-+.|..||++ .+-
T Consensus 8 ~~g~~l~~--~r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 8 RPGDIIQE--SLDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp CHHHHHHH--HHHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred ChhHHHHH--HHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 34555543 3455678899999999999999999 653
No 282
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=26.28 E-value=28 Score=19.23 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=19.0
Q ss_pred cccchhhhhhhcccccchhHh-HHH
Q 046847 40 HHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 40 ~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.+ +..+++...+.|..||++ .+-
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 45 888899999999999999 653
No 283
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.08 E-value=29 Score=19.84 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=14.8
Q ss_pred ccccchhhhhhhcccccchhHh
Q 046847 39 AHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr 60 (88)
..+.+..+++...+.|..||++
T Consensus 20 ~~glsq~~lA~~~gis~~~is~ 41 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNT 41 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 3455666677777777777766
No 284
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=26.08 E-value=26 Score=19.32 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=20.8
Q ss_pred hccccchhhhhhhcccccchhHh-HH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
-..+.+..+++...+.|..|||+ -+
T Consensus 22 ~~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 22 NELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 35678888999999999999998 54
No 285
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=25.89 E-value=32 Score=18.13 Aligned_cols=24 Identities=0% Similarity=0.037 Sum_probs=17.3
Q ss_pred ccccchhhhhhhcc--cccchhHh-HH
Q 046847 39 AHHVKNQTINNRFK--HSGETISR-FN 62 (88)
Q Consensus 39 ~~n~~~r~i~~~F~--~S~eTisr-f~ 62 (88)
.++.+..+++...+ .|..||++ -+
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 45667777777778 78888887 44
No 286
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=25.88 E-value=14 Score=25.26 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
+|-.|+-++-++.++..++.+.+.|.+|||+ .++.=+.+
T Consensus 5 ~L~~F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~l 44 (324)
T 1al3_A 5 QLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL 44 (324)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4555554444444999999999999999999 88764433
No 287
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=25.77 E-value=29 Score=18.90 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=17.3
Q ss_pred hccccchhhhhhhcccccchhHh
Q 046847 38 LAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr 60 (88)
-..+.+..+++...+.|..||++
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~ 42 (84)
T 2ef8_A 20 KEASLSQSELAIFLGLSQSDISK 42 (84)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHH
Confidence 44567777788888888888877
No 288
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=25.35 E-value=54 Score=22.49 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHhc--cccchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHALA--HHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i~~--~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+++..+.|.-+... ...+..+|+.+.+-+.+|++| .+..
T Consensus 12 s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L 53 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTL 53 (257)
T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45555666444432 358999999999999999999 6543
No 289
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=25.27 E-value=80 Score=19.43 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=28.5
Q ss_pred cchhHH-HHHHHHHh-ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 25 VFVDEQ-VCMFLHAL-AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 25 v~veE~-la~FL~i~-~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
++..+- +-..|+.- +.+.+..+++...+.+..||++ .+..-
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le 76 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV 76 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 454442 33344433 3347899999999999999999 77654
No 290
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=25.17 E-value=31 Score=18.96 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=18.7
Q ss_pred HhccccchhhhhhhcccccchhHh
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
....+.+.++++..-+.|..||++
T Consensus 20 R~~~glsq~~lA~~~gis~~~i~~ 43 (82)
T 3s8q_A 20 RLEKGMTQEDLAYKSNLDRTYISG 43 (82)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHH
Confidence 445677888888888888888887
No 291
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=25.16 E-value=31 Score=22.04 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=22.8
Q ss_pred ccchhhhhhhcccccchhHh-HHHHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
..++..++...+-|..||.+ .+...+
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36899999999999999999 888764
No 292
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=25.14 E-value=1.4e+02 Score=19.27 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=38.0
Q ss_pred CCccchhHHHHHHHHHh----ccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 22 DSVVFVDEQVCMFLHAL----AHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 22 t~~v~veE~la~FL~i~----~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
.++-+.+--.|.-||+. +.+-+.+++.+-++.+..+|.+ ++.+++.+.
T Consensus 46 ~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 46 IRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLN 98 (200)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 34556666677777764 5667899999999999999999 999887754
No 293
>3u0j_B Type III effector HOPU1; ADP-ribosyltransferase, GRP7, transferase; 2.70A {Pseudomonas syringae PV}
Probab=25.02 E-value=1.1e+02 Score=22.29 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCccchhHHHHHHHHHhc-----------cccchhhhhhhccc----ccc---------hhHh-HHHHHHHHHHhh
Q 046847 22 DSVVFVDEQVCMFLHALA-----------HHVKNQTINNRFKH----SGE---------TISR-FNSILNGVLELQ 72 (88)
Q Consensus 22 t~~v~veE~la~FL~i~~-----------~n~~~r~i~~~F~~----S~e---------Tisr-f~~Vl~ai~~L~ 72 (88)
-++|.-||.+|+.+|..- .+.-||.|++--.- ++. ++.. .+.+-.|+-+|.
T Consensus 84 ~~~~~~~~~~a~~~~t~~~~~~~~~~~~~~t~~Y~~iN~~LR~~~~~~~~~~~~~~~d~~~ka~Ik~LdSAL~KL~ 159 (270)
T 3u0j_B 84 YRDVYPEECSAIYMHTAQDYSSHLVRGEIGTPLYREVNNYLRLQHENSGREAEIDNHDEKLSPHIKMLSSALNRLM 159 (270)
T ss_dssp GTTCCHHHHHHHHHHHCSSEESSEETTEECSCHHHHHHHHHHHCCSSCSSGGGGGGSCTTTHHHHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhccccccccCccCChhHHHHHHHHhCCCcccccccccccccHHHHHHHHHHHHHHHhcc
Confidence 378999999999999971 25778888877652 222 2456 666666777663
No 294
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=24.92 E-value=68 Score=21.35 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
++.-.|. ....+..+++..++-|..||++ .+..-+
T Consensus 24 ~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 24 KILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp HHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444 3578999999999999999999 877653
No 295
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=24.80 E-value=75 Score=20.52 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHH
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILN 66 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ 66 (88)
+.++--.|.. ....++..++...+-|.+||++ .+...+
T Consensus 19 d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 19 DRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3344333332 3358999999999999999999 887653
No 296
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=24.71 E-value=46 Score=24.35 Aligned_cols=37 Identities=5% Similarity=0.122 Sum_probs=32.7
Q ss_pred CCcCCCccchhHHHHHHHHHhccccchhhhhhhcccc
Q 046847 18 RLKTDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHS 54 (88)
Q Consensus 18 ~L~~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S 54 (88)
|.-+...++.|...+.-+|.++++.+...++..|+.+
T Consensus 283 Gvi~~~dlt~ekAr~kL~~~L~~~~~~~~i~~~f~~~ 319 (328)
T 1wls_A 283 GVIPAGDMTKEATITKLMWILGHTKNIEEVKQLMGKN 319 (328)
T ss_dssp TCEECTTCCHHHHHHHHHHHTTTCCCHHHHHHHHTSC
T ss_pred CEEECCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 5566778999999999999999999999999999764
No 297
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=24.71 E-value=1e+02 Score=19.81 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=32.6
Q ss_pred ccccchhhhhhhcccccchhHhHHHHHHHHHH-hhhhhccCC
Q 046847 39 AHHVKNQTINNRFKHSGETISRFNSILNGVLE-LQHILLKSP 79 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisrf~~Vl~ai~~-L~~~~ik~p 79 (88)
..+..-|.+-+.|+-.+=||...-++|.+|.. =|-.+|+||
T Consensus 75 ~~gSPSr~LL~~~~~~g~Tl~~L~~~Lq~mg~~EAi~~L~~~ 116 (117)
T 2g7r_A 75 PEGSPSLCLLKLMGEKGCTVTELSDFLQAMEHTEVLQLLSPP 116 (117)
T ss_dssp TTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cCCChHHHHHHHHHHcCCcHHHHHHHHHHhccHHHHHHhcCC
Confidence 34455588889999999999778899999986 578888887
No 298
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=24.62 E-value=59 Score=20.80 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=27.5
Q ss_pred HHHHhccc----cchhhhhhhcc-----cccchhHh-HHHHHHHHH
Q 046847 34 FLHALAHH----VKNQTINNRFK-----HSGETISR-FNSILNGVL 69 (88)
Q Consensus 34 FL~i~~~n----~~~r~i~~~F~-----~S~eTisr-f~~Vl~ai~ 69 (88)
.|..++.| .++.+|+.... .|..||.. ...+.+-+.
T Consensus 167 vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 212 (233)
T 1ys7_A 167 LLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLE 212 (233)
T ss_dssp HHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhc
Confidence 34555566 89999999887 88899988 888877765
No 299
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=24.55 E-value=1.5e+02 Score=20.41 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.4
Q ss_pred HHHHHHHHhcc-ccchhhhhhhcccccchhHh-HHHHH
Q 046847 30 QVCMFLHALAH-HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 30 ~la~FL~i~~~-n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+-.+|+.-+. ..+..+++...+.+..||++ .+..-
T Consensus 162 ~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe 199 (250)
T 1p4x_A 162 TILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK 199 (250)
T ss_dssp HHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 34455555442 48999999999999999999 77654
No 300
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=24.52 E-value=68 Score=21.55 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.2
Q ss_pred hhcccccchhHh-HHHHHHHHHHhhhhhccCCC
Q 046847 49 NRFKHSGETISR-FNSILNGVLELQHILLKSPK 80 (88)
Q Consensus 49 ~~F~~S~eTisr-f~~Vl~ai~~L~~~~ik~p~ 80 (88)
..+.|++++|.. --.|.+++..|..++...|.
T Consensus 15 a~lDRt~D~VY~at~~VVkaV~~Ls~~v~~a~~ 47 (153)
T 3gm3_A 15 ANLDRTDDLVYLNVMELVRAVLELKNELAQLPP 47 (153)
T ss_dssp -CCCCTTCHHHHHHHHHHHHHHHHHHHGGGCCH
T ss_pred cccCcCCChHHHHHHHHHHHHHHHHhhhhhcCh
Confidence 468899999999 99999999999988776553
No 301
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=24.35 E-value=74 Score=20.86 Aligned_cols=38 Identities=5% Similarity=0.116 Sum_probs=27.3
Q ss_pred HHHHHHHHhccccchhhhhhhcc-cccchhHh-HHHHHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFK-HSGETISR-FNSILNG 67 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~-~S~eTisr-f~~Vl~a 67 (88)
++.|.-.......+..++...++ -|..|||+ .+..-+|
T Consensus 25 Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 25 RWRITQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp HHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 44554444456788889999995 89999999 8766543
No 302
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=24.19 E-value=28 Score=19.14 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=18.9
Q ss_pred HhccccchhhhhhhcccccchhHh
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
....+.+..+++...+.|..||++
T Consensus 23 R~~~gltq~elA~~~gis~~~is~ 46 (83)
T 3f6w_A 23 RSAAGITQKELAARLGRPQSFVSK 46 (83)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHH
Confidence 345677888888888888888887
No 303
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=24.13 E-value=32 Score=19.93 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHhccccchhhhhhhcccccchhHh
Q 046847 36 HALAHHVKNQTINNRFKHSGETISR 60 (88)
Q Consensus 36 ~i~~~n~~~r~i~~~F~~S~eTisr 60 (88)
+....+.+..+++...+.|..||++
T Consensus 38 ~R~~~glsq~elA~~lgvs~~~is~ 62 (99)
T 2ppx_A 38 IRRALKLTQEEFSARYHIPLGTLRD 62 (99)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHH
Confidence 3456788999999999999999988
No 304
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=24.06 E-value=55 Score=22.59 Aligned_cols=39 Identities=5% Similarity=-0.011 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHhc--cccchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHALA--HHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i~~--~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+++..+.|.-+... ...+..+|+.+.+-+.+|++| .+..
T Consensus 19 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL 60 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTL 60 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45556666554433 358999999999999999999 5543
No 305
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=23.92 E-value=88 Score=19.24 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.4
Q ss_pred cchhhhhhhcccccchhHh-HHHHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
.+...|+.+.+.|..||.+ ++...
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6999999999999999988 77765
No 306
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=23.90 E-value=33 Score=19.50 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=20.8
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+-..+.+..+++...+.|..||++ -+
T Consensus 13 r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 13 RKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445678888899999999999988 54
No 307
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=23.85 E-value=17 Score=23.95 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=0.0
Q ss_pred ccccchhhhhhhcccccchhHh-HHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
..+.+.+.|+..++.|..||.| .++
T Consensus 156 ~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 156 AQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp --------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4668999999999999999988 654
No 308
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=23.49 E-value=93 Score=18.16 Aligned_cols=37 Identities=11% Similarity=0.291 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHhccccchhhhhhhcccccc-hhHh-HHH
Q 046847 26 FVDEQVCMFLHALAHHVKNQTINNRFKHSGE-TISR-FNS 63 (88)
Q Consensus 26 ~veE~la~FL~i~~~n~~~r~i~~~F~~S~e-Tisr-f~~ 63 (88)
+..|++-.+|..-| +.+-.+|+...+-+.. +|.+ ...
T Consensus 11 ~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 11 EIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 56788888888887 5889999999999988 8866 444
No 309
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=23.14 E-value=55 Score=21.75 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=26.7
Q ss_pred HHHHhhCcCCcCCCccchhHHHHHHHHHhccccchhhh
Q 046847 10 FELLCSDERLKTDSVVFVDEQVCMFLHALAHHVKNQTI 47 (88)
Q Consensus 10 ~~~L~~~~~L~~t~~v~veE~la~FL~i~~~n~~~r~i 47 (88)
-..||++- ..|-+.+|.||+.| ||.++-++++-..
T Consensus 37 i~aLreKe-KgdWk~LT~eEKkA--lYrisF~~t~ae~ 71 (147)
T 1v54_D 37 QKALKEKE-KASWSSLSIDEKVE--LYRLKFKESFAEM 71 (147)
T ss_dssp HHHHHHHT-TSCGGGSCHHHHHH--HHHHHCSSCHHHH
T ss_pred HHHHHHHh-cCCHHHcCHHHHHH--HHHHHhccccccc
Confidence 34577764 46779999999999 8888888776654
No 310
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=23.11 E-value=17 Score=26.27 Aligned_cols=34 Identities=3% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHhccccchhhhhhhcccccchhHh-HHHH
Q 046847 30 QVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 30 ~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
++-..||.- .+.+.++++.+|+.|..||+| ....
T Consensus 24 ~iL~~l~~~-~~~t~~eLa~~l~vs~~Tv~r~l~~L 58 (345)
T 2o0m_A 24 QILRNIYWM-QPIGRRSLSETMGITERVLRTETDVL 58 (345)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444443 468999999999999999999 7764
No 311
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=22.81 E-value=78 Score=19.88 Aligned_cols=27 Identities=0% Similarity=0.100 Sum_probs=22.6
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
....++.+++...+-|..|+++ .+..-
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le 62 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLV 62 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3458999999999999999999 77654
No 312
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=22.75 E-value=30 Score=20.09 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=27.1
Q ss_pred cchhHHHHHHHHHhccccchhhhhhhcccccchhHh-HH
Q 046847 25 VFVDEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 25 v~veE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
.++-+.|.- ++-..+.+..+++...+.|..|||+ .+
T Consensus 17 ~~~g~~l~~--~r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 17 IHPGEVIAD--ILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp CCHHHHHHH--HHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHH--HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445555533 3456788999999999999999999 65
No 313
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=22.60 E-value=86 Score=22.70 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=33.4
Q ss_pred CccchhHHHHHHHHHhcccc---------------chhhhhhhc-ccccchhHh--HHHHHHHHH
Q 046847 23 SVVFVDEQVCMFLHALAHHV---------------KNQTINNRF-KHSGETISR--FNSILNGVL 69 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~---------------~~r~i~~~F-~~S~eTisr--f~~Vl~ai~ 69 (88)
...++++++|-+|...+... +...+++.. +.+.+|+|| ...++..+.
T Consensus 190 ~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela~~llg~~~~t~SR~~~~~~l~~L~ 254 (469)
T 1o7f_A 190 KILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLL 254 (469)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSSSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 44678999999998876432 345666655 889999999 455666554
No 314
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=22.40 E-value=85 Score=21.11 Aligned_cols=41 Identities=7% Similarity=-0.099 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
-+++..|+.+.- ..++..++.+.+.|..++|+ ++++-+.+.
T Consensus 22 ~~~l~~f~~v~~-~gs~~~aa~~l~~s~~~~s~~i~~le~~lg 63 (265)
T 1b9m_A 22 PRRISLLKHIAL-SGSISQGAKDAGISYKSAWDAINEMNQLSE 63 (265)
T ss_dssp HHHHHHHHHHHH-HSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 356777765554 56999999999999999999 998877665
No 315
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=22.35 E-value=55 Score=24.32 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCcCCCccchhHHHHHHHHHhccccchhhhhhhcccc
Q 046847 18 RLKTDSVVFVDEQVCMFLHALAHHVKNQTINNRFKHS 54 (88)
Q Consensus 18 ~L~~t~~v~veE~la~FL~i~~~n~~~r~i~~~F~~S 54 (88)
|.-....++.|.....-+|.++++.+...++..|+.+
T Consensus 313 GvI~~~dlt~ekAr~kL~~~L~~~~~~~~i~~~f~~~ 349 (358)
T 2him_A 313 GVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQN 349 (358)
T ss_dssp TCEECTTCCHHHHHHHHHHHHHSSCCHHHHHHHHTSC
T ss_pred CEEECCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Confidence 4556678999999999999999999999999999754
No 316
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=22.30 E-value=47 Score=20.22 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.9
Q ss_pred ccccchhhhhhhcccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+.+-.+++...|-|..+.+| |++..
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5778999999999999999999 98864
No 317
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=22.12 E-value=54 Score=18.40 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=18.6
Q ss_pred chhhhhhhcccccchhHh-HH
Q 046847 43 KNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 43 ~~r~i~~~F~~S~eTisr-f~ 62 (88)
++..++...+.|..|||+ .+
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999 63
No 318
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=21.88 E-value=61 Score=22.28 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHh--ccccchhhhhhhcccccchhHh-HHHH
Q 046847 26 FVDEQVCMFLHAL--AHHVKNQTINNRFKHSGETISR-FNSI 64 (88)
Q Consensus 26 ~veE~la~FL~i~--~~n~~~r~i~~~F~~S~eTisr-f~~V 64 (88)
+++..+.|.-+.. ....+..+|+...+-+.+|++| .+..
T Consensus 21 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL 62 (260)
T 2o0y_A 21 SVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATM 62 (260)
T ss_dssp HHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555555544433 2468999999999999999999 5543
No 319
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.69 E-value=61 Score=20.91 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=32.8
Q ss_pred HHHHHHHHHhccccchhhhhhhcccccchhHh-HHHHHHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINNRFKHSGETISR-FNSILNGVL 69 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~~F~~S~eTisr-f~~Vl~ai~ 69 (88)
+.+|..+|...|+...-.+...+......... |...++.++
T Consensus 173 ~~~a~~~w~~~~Gl~~l~~~g~~~~~~~~~~~~~~~~~~~ll 214 (216)
T 2oi8_A 173 LHRALSFWSRLHGVLSLELAGQFTGMGFDSALLFEAELKDLL 214 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTSCSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChhhhhhhcCCCccccCHHHHHHHHHHHhc
Confidence 67899999999998888888888776667777 777776653
No 320
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=21.66 E-value=80 Score=19.29 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhccccchhhhhhhc------ccccchhHh-HHHHHHHHHHhh
Q 046847 28 DEQVCMFLHALAHHVKNQTINNRF------KHSGETISR-FNSILNGVLELQ 72 (88)
Q Consensus 28 eE~la~FL~i~~~n~~~r~i~~~F------~~S~eTisr-f~~Vl~ai~~L~ 72 (88)
||-=-+|=..---+.+.-.|++|| +||.|-+.- |..|++.+....
T Consensus 36 EETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 36 AETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 343333333334467888899999 688888888 999999888665
No 321
>1dpj_B IA3, proteinase inhibitor IA3 peptide; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: a.137.7.1 PDB: 1g0v_B*
Probab=21.30 E-value=33 Score=17.04 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=17.8
Q ss_pred cchhhhhhhcccccchhHh-HHHHHHHH
Q 046847 42 VKNQTINNRFKHSGETISR-FNSILNGV 68 (88)
Q Consensus 42 ~~~r~i~~~F~~S~eTisr-f~~Vl~ai 68 (88)
...+.+.+-||.|.|-..- -+-|-+|.
T Consensus 2 tdqqkvseifqsskeklqgdakvvsdaf 29 (33)
T 1dpj_B 2 TDQQKVSEIFQSSKEKLQGDAKVVSDAF 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHHHhccchHHHHHHH
Confidence 3456677888888887766 55555544
No 322
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=21.27 E-value=30 Score=20.37 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=20.4
Q ss_pred HhccccchhhhhhhcccccchhHh-HH
Q 046847 37 ALAHHVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 37 i~~~n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+...+.+..+++...|.|..||++ -+
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 455677888888888888888888 54
No 323
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=21.24 E-value=70 Score=19.53 Aligned_cols=36 Identities=0% Similarity=0.131 Sum_probs=29.5
Q ss_pred HHHHHHHHHhccccchhhhhh-hcccccchhHh-HHHHH
Q 046847 29 EQVCMFLHALAHHVKNQTINN-RFKHSGETISR-FNSIL 65 (88)
Q Consensus 29 E~la~FL~i~~~n~~~r~i~~-~F~~S~eTisr-f~~Vl 65 (88)
=.+-+||+.-+ ..+-.++++ .-+-..+||+| ..-..
T Consensus 19 fsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~ 56 (95)
T 1bja_A 19 ATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLI 56 (95)
T ss_dssp HHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHH
Confidence 35667887777 899999999 99999999999 76543
No 324
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.13 E-value=40 Score=19.45 Aligned_cols=26 Identities=4% Similarity=-0.070 Sum_probs=18.9
Q ss_pred hccccchhhhhhhcccccchhHh-HHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
-..+.+..+++...+.|..||++ -+-
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 44567777888888888888877 543
No 325
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.99 E-value=58 Score=20.86 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=23.2
Q ss_pred cchhhhhhhc-----ccccchhHh-HHHHHHHHH
Q 046847 42 VKNQTINNRF-----KHSGETISR-FNSILNGVL 69 (88)
Q Consensus 42 ~~~r~i~~~F-----~~S~eTisr-f~~Vl~ai~ 69 (88)
.++.+|+... ..|..||.. ...+.+.+.
T Consensus 176 ~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~ 209 (230)
T 2oqr_A 176 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIE 209 (230)
T ss_dssp EEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHC
T ss_pred EcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 9999999988 778888888 888777664
No 326
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=20.81 E-value=45 Score=22.68 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=20.9
Q ss_pred hccccchhhhhhhcccccchhHh-HHH
Q 046847 38 LAHHVKNQTINNRFKHSGETISR-FNS 63 (88)
Q Consensus 38 ~~~n~~~r~i~~~F~~S~eTisr-f~~ 63 (88)
.|.-.+-+.++..|+.|..||.+ +..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VReAL~~ 72 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVREALRQ 72 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHHHHHHH
Confidence 55667888899999999999976 554
No 327
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=20.59 E-value=1.2e+02 Score=18.73 Aligned_cols=27 Identities=4% Similarity=0.100 Sum_probs=22.3
Q ss_pred ccccchhhhhhhc-ccccchhHh-HHHHH
Q 046847 39 AHHVKNQTINNRF-KHSGETISR-FNSIL 65 (88)
Q Consensus 39 ~~n~~~r~i~~~F-~~S~eTisr-f~~Vl 65 (88)
....++.+++... +.|..|+++ .+..-
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le 74 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALE 74 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3458999999999 699999999 77654
No 328
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=20.58 E-value=1.6e+02 Score=19.37 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.2
Q ss_pred ccchhhhhhhcccccchhHh-HH
Q 046847 41 HVKNQTINNRFKHSGETISR-FN 62 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~ 62 (88)
+.+..+|+...|.|..|+.+ -+
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 57999999999999999999 76
No 329
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=20.29 E-value=90 Score=19.09 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=21.4
Q ss_pred cchhHh-HHHHHHHHHHh--------hhhhccCCCCCC
Q 046847 55 GETISR-FNSILNGVLEL--------QHILLKSPKPMP 83 (88)
Q Consensus 55 ~eTisr-f~~Vl~ai~~L--------~~~~ik~p~~~~ 83 (88)
.+...+ +.+++++|... +.-|.+||+...
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~ 43 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ 43 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc
Confidence 455667 88889888865 568889888643
No 330
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=20.19 E-value=70 Score=23.36 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=23.1
Q ss_pred CccchhHHHHHHHHHhccccchhhhhhhc
Q 046847 23 SVVFVDEQVCMFLHALAHHVKNQTINNRF 51 (88)
Q Consensus 23 ~~v~veE~la~FL~i~~~n~~~r~i~~~F 51 (88)
..++..++|..||+.+|..+....=+..|
T Consensus 178 ~Y~P~l~~LP~FllrL~t~VdW~~Ek~Cf 206 (284)
T 3rbn_A 178 NYVPPLEGLPIFILRLATEVNWDEEKECF 206 (284)
T ss_dssp TCCCCGGGHHHHHHHHHHTSCCSSHHHHH
T ss_pred CCCCChHHHHHHHHHHhccCCCccHHHHH
Confidence 56788999999999999988766554444
No 331
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=20.02 E-value=1.2e+02 Score=18.17 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=20.1
Q ss_pred ccchhhhhhhcccccchhHh-HHHHH
Q 046847 41 HVKNQTINNRFKHSGETISR-FNSIL 65 (88)
Q Consensus 41 n~~~r~i~~~F~~S~eTisr-f~~Vl 65 (88)
..+-+.|+.+++-|..+|.+ ++..-
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~ 51 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLR 51 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47888999999999999988 55543
Done!