BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046848
(956 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 184/603 (30%), Positives = 283/603 (46%), Gaps = 65/603 (10%)
Query: 315 LKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIA 374
LK L +S N + GD+ D +L +L + SN + +P G S+L+ L I+
Sbjct: 180 LKHLAISGNKISGDV--------DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 231
Query: 375 NNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
N+L+G ++++ +L+ L + +N G I L +L L+ LA+N T E
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS---LAENKFTGE---- 284
Query: 435 WIPPF------QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY 488
IP F L+ ++L P + + + + SL +S++ S +P +
Sbjct: 285 -IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 489 NLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI-PQLPLNAS----FLNLSK 543
L +LS N+ G+LP + +D+SSN F GPI P L N L L
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 544 NKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI 603
N F+G I S +L + LS N LSG +P L L L N G+IP +
Sbjct: 404 NGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXX 663
++K L++L L N LTGE+PS +N + L + L N L+GEIP WIG
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKL 521
Query: 664 XXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLT--LISNYY 721
F+G+IP +L ++ LDL++N +G IP AM + G + Y
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFKQSGKIAANFIAGKRY 575
Query: 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL------------------------GLV 757
+ D +K + + +L ++G + E + L G +
Sbjct: 576 VYIKNDGMK-KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
LD+S N L G +P+EI + L LNL N ++G I ++G L+ L+ LDLS N+ G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKCPDEDS 876
IP ++S L+ L+ +DLS NNLSG IP Q ++F + + N LCG PLP +C D +
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSN 752
Query: 877 APG 879
A G
Sbjct: 753 ADG 755
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 172/596 (28%), Positives = 262/596 (43%), Gaps = 79/596 (13%)
Query: 110 LILQHLTYLDLSGNNFSGSSIPEFIXXXX--XXXXXXXXNTEFAGPIPLQLGNLSRLQVL 167
L L L LDLS N+ SG+++ ++ + +G + + L+ L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 205
Query: 168 DIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPP 227
D+ N+ +G + +L S+L +LD+S + LS ++ + +S LK L + S
Sbjct: 206 DVSSNNFSTG--IPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELKLLNISSNQFVG 261
Query: 228 TIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFG 287
IP L SL+ + + N T I +L L L +L N G++P FG
Sbjct: 262 PIPPLPL-----KSLQYLSLAENKFTGEIPDFLSGACDTLTGL-DLSGNHFYGAVPPFFG 315
Query: 288 HMPSLNTLFLASNQFR-EIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL 345
L +L L+SN F E+P +L M LK L LS+N G+L E + NLS SL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASL 370
Query: 346 AWLFLDSNEITGS-LPNF--GGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L L SN +G LPN ++L+ L + NN G I ++ +L SL L N L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQ 462
G I + L +LS L L L N L E + + L + L + P L N
Sbjct: 431 SGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGI--DI 520
+ + +SN+ ++ +P W + NL+ LSNN G +P + R I D+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIP---AELGDCRSLIWLDL 545
Query: 521 SSNQFEGPIPQL------PLNASFL----------NLSKNKFSGSISFL----------- 553
++N F G IP + A+F+ + K + G+ + L
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 554 -------CSIT-----GH---------KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLAN 592
C+IT GH + ++D+S N+LSG +P L ILNL +
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 593 NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIP 648
N G IPD +G L+ L L L +N+L G +P + + LT +DL N LSG IP
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 186 bits (473), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 184/603 (30%), Positives = 283/603 (46%), Gaps = 65/603 (10%)
Query: 315 LKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIA 374
LK L +S N + GD+ D +L +L + SN + +P G S+L+ L I+
Sbjct: 177 LKHLAISGNKISGDV--------DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 228
Query: 375 NNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
N+L+G ++++ +L+ L + +N G I L +L L+ LA+N T E
Sbjct: 229 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS---LAENKFTGE---- 281
Query: 435 WIPPF------QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTY 488
IP F L+ ++L P + + + + SL +S++ S +P +
Sbjct: 282 -IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 489 NLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI-PQLPLNAS----FLNLSK 543
L +LS N+ G+LP + +D+SSN F GPI P L N L L
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 544 NKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI 603
N F+G I S +L + LS N LSG +P L L L N G+IP +
Sbjct: 401 NGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXX 663
++K L++L L N LTGE+PS +N + L + L N L+GEIP WIG
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKL 518
Query: 664 XXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLT--LISNYY 721
F+G+IP +L ++ LDL++N +G IP AM + G + Y
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFKQSGKIAANFIAGKRY 572
Query: 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL------------------------GLV 757
+ D +K + + +L ++G + E + L G +
Sbjct: 573 VYIKNDGMK-KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 631
Query: 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817
LD+S N L G +P+EI + L LNL N ++G I ++G L+ L+ LDLS N+ G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLPNKCPDEDS 876
IP ++S L+ L+ +DLS NNLSG IP Q ++F + + N LCG PLP +C D +
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSN 749
Query: 877 APG 879
A G
Sbjct: 750 ADG 752
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 172/596 (28%), Positives = 262/596 (43%), Gaps = 79/596 (13%)
Query: 110 LILQHLTYLDLSGNNFSGSSIPEFIXXXX--XXXXXXXXNTEFAGPIPLQLGNLSRLQVL 167
L L L LDLS N+ SG+++ ++ + +G + + L+ L
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 202
Query: 168 DIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPP 227
D+ N+ +G + +L S+L +LD+S + LS ++ + +S LK L + S
Sbjct: 203 DVSSNNFSTG--IPFLGDCSALQHLDISGNKLS--GDFSRAISTCTELKLLNISSNQFVG 258
Query: 228 TIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFG 287
IP L SL+ + + N T I +L L L +L N G++P FG
Sbjct: 259 PIPPLPL-----KSLQYLSLAENKFTGEIPDFLSGACDTLTGL-DLSGNHFYGAVPPFFG 312
Query: 288 HMPSLNTLFLASNQFR-EIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL 345
L +L L+SN F E+P +L M LK L LS+N G+L E + NLS SL
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASL 367
Query: 346 AWLFLDSNEITGS-LPNF--GGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L L SN +G LPN ++L+ L + NN G I ++ +L SL L N L
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQ 462
G I + L +LS L L L N L E + + L + L + P L N
Sbjct: 428 SGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGI--DI 520
+ + +SN+ ++ +P W + NL+ LSNN G +P + R I D+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIP---AELGDCRSLIWLDL 542
Query: 521 SSNQFEGPIPQL------PLNASFL----------NLSKNKFSGSISFL----------- 553
++N F G IP + A+F+ + K + G+ + L
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 554 -------CSIT-----GH---------KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLAN 592
C+IT GH + ++D+S N+LSG +P L ILNL +
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 593 NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIP 648
N G IPD +G L+ L L L +N+L G +P + + LT +DL N LSG IP
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 119/277 (42%), Gaps = 54/277 (19%)
Query: 593 NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIG 652
N+ G IP +I L L L + + ++G +P F + L +D N LSG +P I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 653 EGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712
L N+ + N ISG IP + +F+ +
Sbjct: 147 S-------------------------LPNLVGITFDGNRISGAIPDSYGSFSKL------ 175
Query: 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772
+TS+ + LT K L V DLS N L G+
Sbjct: 176 --------FTSMT----------ISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDAS 214
Query: 773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVM 832
++L++N+L + K+G K+L+ LDL N+ +G++P L+QL L +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 833 DLSYNNLSGKIPSGTQLQSFSTSMYAGNE-LCGLPLP 868
++S+NNL G+IP G LQ F S YA N+ LCG PLP
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 114/265 (43%), Gaps = 62/265 (23%)
Query: 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL 619
+L Y+ +++ +SG +PD SQ +L L+ + N+ G +P SI L NL ++ NR+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 620 TGELPSFFTNGSQL-TLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCH 678
+G +P + + S+L T M + +N L+G+IP
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------------------------- 196
Query: 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738
N+ +DLS N + G F + + + L N SLA+D K
Sbjct: 197 -LNLAFVDLSRNMLEGDASVLFG-----SDKNTQKIHLAKN---SLAFDLGK-------- 239
Query: 739 AVLTWKGSQYEYQSTLGLVK---ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI 795
+GL K LDL +N++ G +P+ + L L +LN+S N L G+I
Sbjct: 240 ---------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 796 TPKIGQLKSLDFLDLSRNQFFGSIP 820
P+ G L+ D + N+ P
Sbjct: 285 -PQGGNLQRFDVSAYANNKCLCGSP 308
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 157/396 (39%), Gaps = 103/396 (26%)
Query: 36 CIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCG--WRGVNCSNRTGHVYKLDLHIL 93
C ++++ALL K+ L + + LSSW DCC W GV C T Y+++
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDT-QTYRVN---- 53
Query: 94 QVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXNTEFAGP 153
LDLSG N P
Sbjct: 54 -----------------------NLDLSGLNLPKPY-----------------------P 67
Query: 154 IPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLS-KFSNWMQVLSKL 212
IP L NL L L IG + + G ++ L+ L YL ++ +N+S +++ + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 213 DSLKALY-LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELI 271
+L Y +S LPP+I S NLV I
Sbjct: 128 VTLDFSYNALSGTLPPSISSL--------------------------------PNLVG-I 154
Query: 272 NLGSNQLQGSIPEAFGHMPSLNT-LFLASNQFR-EIPKSLGNMCNLKSLTLSYNTLRGDL 329
N++ G+IP+++G L T + ++ N+ +IP + N+ NL + LS N L GD
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213
Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQL 389
S + SD T+ + L N + L G +L L + NNR+ GT+ + + QL
Sbjct: 214 SVLFG--SDKNTQK----IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 390 VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
L SL + N+L G I + NL + A+N
Sbjct: 268 KFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANN 301
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 27/233 (11%)
Query: 411 LSNLSNLTILYLAD-NSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLD 469
L+NL L LY+ N+L QL + + + P +L +++LD
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 470 ISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI 529
S + +S T+P + NL N+I G +P+ F + IS N+ G I
Sbjct: 132 FSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 530 PQ--LPLNASFLNLSKNKFSG--------------------SISFLCSITG--HKLDYID 565
P LN +F++LS+N G S++F G L+ +D
Sbjct: 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250
Query: 566 LSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
L NN + G LP +Q L LN++ N+ G+IP G L+ + NN+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLR 326
+ L+ L N+LQ F + +L TL++ N+ + +P + + NL L L N L+
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINK 384
+ +L T L +L L NE+ SLP F +SLK L + NN+L
Sbjct: 123 SLPPRVFDSL------TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 385 SVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
+ +L +L++L L NN L+ V AF S L L +L L +N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDS-LEKLKMLQLQEN 215
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
+ K+L + +N+L+ +K+ +L KL L+L++N L+ + + F L NL L++ DN
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTDN 95
Query: 426 SLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWN 485
L + L+++ L ++ P+ + ++ L + + + ++P ++
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154
Query: 486 QTYNLSFFNLSNNQIK 501
+ +L L NNQ+K
Sbjct: 155 KLTSLKELRLYNNQLK 170
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816
+++L L+ NKL +L L L ++ N L QL +L L L RNQ
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122
Query: 817 GSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
P L++L+ + L YN L +P G +L S N+L +P
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVP 173
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 36/192 (18%)
Query: 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739
A+ + LDL SN +S + K F+ T + L L N +L K K+
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRL-----LYLNDNKLQTLPAGIFKELKN----- 86
Query: 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPK 798
++ L ++ NKL +P + D L L L L RN L + P+
Sbjct: 87 -----------------LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKS-LPPR 127
Query: 799 I-GQLKSLDFLDLSRNQFFGSIPSSL-SQLSRLSVMDLSYNNLSGKIPSGT--QLQSFST 854
+ L L +L L N+ S+P + +L+ L + L YNN ++P G +L T
Sbjct: 128 VFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKT 185
Query: 855 SMYAGNELCGLP 866
N+L +P
Sbjct: 186 LKLDNNQLKRVP 197
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 101/245 (41%), Gaps = 43/245 (17%)
Query: 72 GWRG---VNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGS 128
GW+ VNC + G L L L+ KG + S + L L +LDLS N S
Sbjct: 305 GWQHLELVNC--KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS-- 360
Query: 129 SIPEFIXXXXXXXXXXXXNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGEN----LEWLS 184
F G + L+ LD+ FN +I+ + LE L
Sbjct: 361 ---------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399
Query: 185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEV 244
HL D SNL + S + LS L+ L + T + + N +SLEV
Sbjct: 400 HL------DFQHSNLKQMSEFSVFLS----LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 IVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE 304
+ + GN+ ++ P +F NL ++L QL+ P AF + SL L +ASNQ +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 305 IPKSL 309
+P +
Sbjct: 509 VPDGI 513
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 403 RGVISEAFLSNLSNLTILYLADNSL 427
+ + SNL+NL L L+ N +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK-IPDSIGFLKNLQSLSLYNNRL 619
L Y+D+S+ ++ SL +L +A NSF +PD L+NL L L +L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 620 TGELPSFFTNGSQLTLMDLGKNGLSGEIPTWI 651
P+ F + S L ++++ N L +P I
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKS-VPDGI 513
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 267 LVELINLGSN-QLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNT 324
L+E ++L N QL+ P F + L+TL L +E+ P + L+ L L N
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTI 382
L+ + ++L + L LFL N I+ S+P F G SL RL + NR+
Sbjct: 141 LQALPDDTFRDLGN------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
+ L +L +L+L N+L + +EA L+ L L L L DN
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDN 235
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 261 FNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASN-QFREI-PKSLGNMCNLKSL 318
F NL ++ L SN L AF + L L L+ N Q R + P + + L +L
Sbjct: 52 FRACRNLT-ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110
Query: 319 TLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANN 376
L R L E+ L G +L +L+L N + +LP+ F +L L + N
Sbjct: 111 HLD----RCGLQELGPGLFRGLA--ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 163
Query: 377 RLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
R++ ++ L L+ L LH N + V AF +L L LYL N+L+
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLS 214
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 36/88 (40%)
Query: 754 LGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRN 813
L ++ L L N L + DL L L L N ++ L SLD L L +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 814 QFFGSIPSSLSQLSRLSVMDLSYNNLSG 841
+ P + L RL + L NNLS
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 362 FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILY 421
F G ++L+ L + +N L + + L L LFLH N + V AF L +L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLL 183
Query: 422 LADNSLTLEFSH 433
L N + H
Sbjct: 184 LHQNRVAHVHPH 195
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 267 LVELINLGSN-QLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNT 324
L+E ++L N QL+ P F + L+TL L +E+ P + L+ L L N
Sbjct: 80 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 139
Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTI 382
L+ + ++L + L LFL N I+ S+P F G SL RL + NR+
Sbjct: 140 LQALPDDTFRDLGN------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 383 NKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
+ L +L +L+L N+L + +EA L+ L L L L DN
Sbjct: 193 PHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDN 234
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 261 FNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASN-QFREI-PKSLGNMCNLKSL 318
F NL ++ L SN L AF + L L L+ N Q R + P + + L +L
Sbjct: 51 FRACRNLT-ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 109
Query: 319 TLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANN 376
L R L E+ L G +L +L+L N + +LP+ F +L L + N
Sbjct: 110 HLD----RCGLQELGPGLFRGLA--ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGN 162
Query: 377 RLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
R++ ++ L L+ L LH N + V AF +L L LYL N+L+
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLS 213
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 36/88 (40%)
Query: 754 LGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRN 813
L ++ L L N L + DL L L L N ++ L SLD L L +N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 814 QFFGSIPSSLSQLSRLSVMDLSYNNLSG 841
+ P + L RL + L NNLS
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 362 FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILY 421
F G ++L+ L + +N L + + L L LFLH N + V AF L +L L
Sbjct: 124 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLL 182
Query: 422 LADNSLTLEFSH 433
L N + H
Sbjct: 183 LHQNRVAHVHPH 194
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSL--------TLSY 322
++ +N L ++ E GH+ L TL L NQ +E+ K +KSL ++SY
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 323 NTLRGDL------------SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKR 370
+ +GD S I+ + C + L L SN+I +L+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448
Query: 371 LSIANNRLNGTINKSVGQLVKLESLFLHNN 400
L++A+N+L + +L L+ ++LH N
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 172 NSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS 231
N+L++ E HL+ L L L + L + S ++ +++ SL+ L + +
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 232 SDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPS 291
D + + SL + + N LTD+I+ L +++++L SN+++ SIP+ + +
Sbjct: 393 GD--CSWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNKIK-SIPKQVVKLEA 445
Query: 292 LNTLFLASNQFREIP 306
L L +ASNQ + +P
Sbjct: 446 LQELNVASNQLKSVP 460
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816
+K+LDL SNK+ +P++++ L L LN++ N L +L SL + L N +
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Query: 817 GSIPSSLSQLSR 828
S P + LSR
Sbjct: 482 CSCP-RIDYLSR 492
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 52/289 (17%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
N + A PL NL+ L L + FN+ I+ +++ L +L++L L+LS + +S S
Sbjct: 94 NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNVSS 265
LS L SL+ L S + P ++L T+LE + I N ++D S+ L N+ S
Sbjct: 146 -ALSGLTSLQQLSFSSNQVTDLKPLANL-----TTLERLDISSNKVSDISVLAKLTNLES 199
Query: 266 NLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTL 325
+ +NQ+ P G + +L+ L L NQ ++I +L ++ NL L L+ N
Sbjct: 200 LIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ- 250
Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL------- 378
I NL+ T L L L +N+I+ P G ++L L + N+L
Sbjct: 251 -------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 302
Query: 379 -------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
N + V L KL+ LF +NN + V S A L+N+
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 52/289 (17%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
N + A PL NL+ L L + FN+ I+ +++ L +L++L L+LS + +S S
Sbjct: 94 NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNVSS 265
LS L SL+ L S + P ++L T+LE + I N ++D S+ L N+ S
Sbjct: 146 -ALSGLTSLQQLNFSSNQVTDLKPLANL-----TTLERLDISSNKVSDISVLAKLTNLES 199
Query: 266 NLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTL 325
+ +NQ+ P G + +L+ L L NQ ++I +L ++ NL L L+ N
Sbjct: 200 LIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ- 250
Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL------- 378
I NL+ T L L L +N+I+ P G ++L L + N+L
Sbjct: 251 -------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 302
Query: 379 -------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
N + V L KL+ LF +NN + V S A L+N+
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 128/287 (44%), Gaps = 33/287 (11%)
Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
+ L I+ SNN L+ P L + + NN P + L NL L+L+NN+
Sbjct: 63 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQ-LC 677
+T P N + L ++L N +S +I G N L+ L
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSG-----LTSLQQLNFSSNQVTDLKPLA 170
Query: 678 HLANVQILDLSSNNISGI-IPKCFNNFTAM--THEKGSNLT---LISNY-YTSLAYDSLK 730
+L ++ LD+SSN +S I + N ++ T+ + S++T +++N SL + LK
Sbjct: 171 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 230
Query: 731 ---TTKSYFDKAVLTWKGSQYEYQSTL-GLVKILDLSSNKLGGEVPEEIMDLAGLIALN- 785
T S + L +Q + L GL K+ +L KLG I LAGL AL
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL---KLGANQISNISPLAGLTALTN 287
Query: 786 --LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP-SSLSQLSRL 829
L+ N L I+P I LK+L +L L N P SSL++L RL
Sbjct: 288 LELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 123/288 (42%), Gaps = 55/288 (19%)
Query: 365 FSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLAD 424
++L +++ +NN+L + L KL + ++NN + + A L+NL+ LT+ +
Sbjct: 62 LNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF---N 116
Query: 425 NSLT-------------LEFSHDWIPPF-------QLSQVNLGSCKIGPRFPKWLRNQNQ 464
N +T LE S + I L Q+N S ++ P L N
Sbjct: 117 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTT 174
Query: 465 ILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGID 519
+ LDIS++ +SD + NL +NNQI G L NL +
Sbjct: 175 LERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITPLGILTNLDE--------LS 223
Query: 520 ISSNQFE--GPIPQLPLNASFLNLSKNKFSGSISFLCSITG-HKLDYIDLSNNLLSGRLP 576
++ NQ + G + L N + L+L+ N+ IS L ++G KL + L N +S P
Sbjct: 224 LNGNQLKDIGTLASLT-NLTDLDLANNQ----ISNLAPLSGLTKLTELKLGANQISNISP 278
Query: 577 DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP 624
+ +L L L N P I LKNL L+LY N ++ P
Sbjct: 279 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 34/167 (20%)
Query: 236 LNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNT 294
L T+L +++ GN L S+ +F+ +NL EL+ L NQLQ S+P+ F + +L
Sbjct: 81 LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELV-LVENQLQ-SLPDGVFDKLTNLTY 137
Query: 295 LFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSN 353
L LA NQ + +PK + + NL L LSYN L Q+L +G
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL--------QSLPEGV------------- 176
Query: 354 EITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
F + LK L + N+L + +L L+ ++LH+N
Sbjct: 177 --------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 47/231 (20%)
Query: 161 LSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL 220
L ++ L +G N L ++ L L++L YL L+ + L N V KL +LK L L
Sbjct: 62 LPNVRYLALGGNKL---HDISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELVL 116
Query: 221 ISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQG 280
+ L +L D ++ L N++ +NL NQLQ
Sbjct: 117 VENQL------------------------QSLPDGVFDKLTNLT-----YLNLAHNQLQS 147
Query: 281 SIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDG 339
F + +L L L+ NQ + +P+ + + LK L L N L+ + L
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL--- 204
Query: 340 CTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLV 390
TSL +++L N + P ++ LS N+ +G + S G +
Sbjct: 205 ---TSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSAGSVA 246
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 762 LSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP 820
L+ N+L +P + D L L L L N L +L +L +L+L+ NQ
Sbjct: 92 LTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 821 SSLSQLSRLSVMDLSYNNLSGKIPSGT 847
+L+ L+ +DLSYN L +P G
Sbjct: 151 GVFDKLTNLTELDLSYNQLQS-LPEGV 176
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 132/289 (45%), Gaps = 52/289 (17%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
N + A PL NL+ L L + FN+ I+ +++ L +L++L L+LS + +S S
Sbjct: 94 NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNVSS 265
LS L SL+ L S + P ++L T+LE + I N ++D S+ L N+ S
Sbjct: 146 -ALSGLTSLQQLSFSSNQVTDLKPLANL-----TTLERLDISSNKVSDISVLAKLTNLES 199
Query: 266 NLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTL 325
+ +NQ+ P G + +L+ L L NQ ++I +L ++ NL L L+ N
Sbjct: 200 LIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ- 250
Query: 326 RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL------- 378
I NL+ T L L L +N+I+ P G ++L L + N+L
Sbjct: 251 -------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPIS 302
Query: 379 -------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
N + V L KL+ LF NN + V S A L+N+
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 351
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 35/244 (14%)
Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
++P +IP + YLN + + VI + + + +S NLV I +G
Sbjct: 28 EVPASIPVNTRYLNLQEN-SIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG--------- 77
Query: 284 EAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTL---------------RG 327
AF +PSLNTL L N+ +P ++ + L+ L L N + R
Sbjct: 78 -AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 328 DLSEI--IQNLSDGCTK--TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN 383
DL E+ ++ +S+ + +L +L L + +PN L+ L ++ NRL+
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF-QLS 442
S L L L+L + + + AF +L +L L L+ N+L + HD P +L
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAF-DDLKSLEELNLSHNNL-MSLPHDLFTPLHRLE 253
Query: 443 QVNL 446
+V+L
Sbjct: 254 RVHL 257
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 281 SIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC 340
S P A + + + E+P S+ N + L L N+++ ++ ++L
Sbjct: 5 SCPAACSCSNQASRVICTRRELAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRH-- 60
Query: 341 TKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHN 399
L L L N + + F G SL L + +NRL ++ L KL L+L N
Sbjct: 61 ----LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 400 NSLRGVISEAF 410
N + + S AF
Sbjct: 117 NPIESIPSYAF 127
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
N + A PL NL+ L L + FN+ I+ +++ L +L++L L+LS + +S S
Sbjct: 99 NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 150
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
LS L SL+ L + DL P L + T+LE + I N ++D S+ L N+
Sbjct: 151 -ALSGLTSLQQLSFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 201
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
S + +NQ+ P G + +L+ L L NQ ++I +L ++ NL L L+ N
Sbjct: 202 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 253
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
I NL+ T L L L +N+I+ P G ++L L + N+L
Sbjct: 254 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 304
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
N + V L KL+ LF +NN + V S A L+N+
Sbjct: 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 355
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 125/286 (43%), Gaps = 32/286 (11%)
Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
+ L I+ SNN L+ P L + + NN P + L NL L+L+NN+
Sbjct: 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123
Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCH 678
+T P N + L ++L N +S +I G L +
Sbjct: 124 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLK-----PLAN 175
Query: 679 LANVQILDLSSNNISGI-IPKCFNNFTAM--THEKGSNLT---LISNY-YTSLAYDSLK- 730
L ++ LD+SSN +S I + N ++ T+ + S++T +++N SL + LK
Sbjct: 176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235
Query: 731 --TTKSYFDKAVLTWKGSQYEYQSTL-GLVKILDLSSNKLGGEVPEEIMDLAGLIALN-- 785
T S + L +Q + L GL K+ +L KLG I LAGL AL
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL---KLGANQISNISPLAGLTALTNL 292
Query: 786 -LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP-SSLSQLSRL 829
L+ N L I+P I LK+L +L L N P SSL++L RL
Sbjct: 293 ELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
N + A PL NL+ L L + FN+ I+ +++ L +L++L L+LS + +S S
Sbjct: 94 NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
LS L SL+ L + DL P L + T+LE + I N ++D S+ L N+
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 196
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
S + +NQ+ P G + +L+ L L NQ ++I +L ++ NL L L+ N
Sbjct: 197 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 248
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
I NL+ T L L L +N+I+ P G ++L L + N+L
Sbjct: 249 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 299
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
N + V L KL+ LF +NN + V S A L+N+
Sbjct: 300 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 350
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 127/288 (44%), Gaps = 36/288 (12%)
Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
+ L I+ SNN L+ P L + + NN P + L NL L+L+NN+
Sbjct: 63 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIP--LQL 676
+T P N + L ++L N +S +I G F + L
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSG-------LTSLQQLNFGNQVTDLKPL 168
Query: 677 CHLANVQILDLSSNNISGI-IPKCFNNFTAM--THEKGSNLT---LISNY-YTSLAYDSL 729
+L ++ LD+SSN +S I + N ++ T+ + S++T +++N SL + L
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 228
Query: 730 K---TTKSYFDKAVLTWKGSQYEYQSTL-GLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
K T S + L +Q + L GL K+ +L KLG I LAGL AL
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL---KLGANQISNISPLAGLTALT 285
Query: 786 ---LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP-SSLSQLSRL 829
L+ N L I+P I LK+L +L L N P SSL++L RL
Sbjct: 286 NLELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 43/238 (18%)
Query: 72 GWRG---VNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGS 128
GW+ VNC + G L L L+ KG + S + L L +LDLS N S
Sbjct: 305 GWQHLELVNC--KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS-- 360
Query: 129 SIPEFIXXXXXXXXXXXXNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGEN----LEWLS 184
F G + L+ LD+ FN +I+ + LE L
Sbjct: 361 ---------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399
Query: 185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEV 244
HL D SNL + S + LS L+ L + T + + N +SLEV
Sbjct: 400 HL------DFQHSNLKQMSEFSVFLS----LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 245 IVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQF 302
+ + GN+ ++ P +F NL ++L QL+ P AF + SL L ++ N F
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 403 RGVISEAFLSNLSNLTILYLADNSL 427
+ + SNL+NL L L+ N +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 778 LAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836
L+ L L ++ N+ P I +L++L FLDLS+ Q P++ + LS L V+++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 837 NNL 839
NN
Sbjct: 504 NNF 506
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 754 LGLVKILDLSSNKLGGE-VPEEIMDLAGLIALNLSRNTLTGQITP-KIGQLKSLDFLDLS 811
L +++L ++ N +P+ +L L L+LS+ L Q++P L SL L++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 502
Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSM 856
N FF L+ L V+D S N++ +LQ F +S+
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSL 545
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK-IPDSIGFLKNLQSLSLYNNRL 619
L Y+D+S+ ++ SL +L +A NSF +PD L+NL L L +L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 620 TGELPSFFTNGSQLTLMDLGKN 641
P+ F + S L ++++ N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHN 504
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 35/244 (14%)
Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
++P +IP + YLN + + VI + + + +S NLV I +G
Sbjct: 28 EVPASIPVNTRYLNLQEN-SIQVIRTDTFKHLRHLEILQLSKNLVRKIEVG--------- 77
Query: 284 EAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTL---------------RG 327
AF +PSLNTL L N+ +P ++ + L+ L L N + R
Sbjct: 78 -AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRL 136
Query: 328 DLSEI--IQNLSDGCTK--TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN 383
DL E+ ++ +S+ + +L +L L + +PN L+ L ++ NRL+
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF-QLS 442
S L L L+L + + + AF +L +L L L+ N+L + HD P +L
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAF-DDLKSLEELNLSHNNL-MSLPHDLFTPLHRLE 253
Query: 443 QVNL 446
+V+L
Sbjct: 254 RVHL 257
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 281 SIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC 340
S P A + + + E+P S+ N + L L N+++ ++ ++L
Sbjct: 5 SCPAACSCSNQASRVICTRRELAEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRH-- 60
Query: 341 TKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHN 399
L L L N + + F G SL L + +NRL ++ L KL L+L N
Sbjct: 61 ----LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 400 NSLRGVISEAF 410
N + + S AF
Sbjct: 117 NPIESIPSYAF 127
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
N + A PL NL+ L L + FN+ I+ +++ L +L++L L+LS + +S S
Sbjct: 98 NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 149
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
LS L SL+ L + DL P L + T+LE + I N ++D S+ L N+
Sbjct: 150 -ALSGLTSLQQLSFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 200
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
S + +NQ+ P G + +L+ L L NQ ++I +L ++ NL L L+ N
Sbjct: 201 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 252
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
I NL+ T L L L +N+I+ P G ++L L + N+L
Sbjct: 253 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 303
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
N + V L KL+ LF NN + V S A L+N+
Sbjct: 304 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNI 354
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 15/145 (10%)
Query: 162 SRLQVLDIGFNSLISGEN----LEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKA 217
+ L+ LD+ FN +I+ + LE L HL D SNL + S + LS L+
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFLS----LRN 127
Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQ 277
L + T + + N +SLEV+ + GN+ ++ P +F NL ++L Q
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQ 186
Query: 278 LQGSIPEAFGHMPSLNTLFLASNQF 302
L+ P AF + SL L ++ N F
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 778 LAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836
L+ L L ++ N+ P I +L++L FLDLS+ Q P++ + LS L V+++S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 837 NN 838
NN
Sbjct: 209 NN 210
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 754 LGLVKILDLSSNKLGGE-VPEEIMDLAGLIALNLSRNTLTGQITP-KIGQLKSLDFLDLS 811
L +++L ++ N +P+ +L L L+LS+ L Q++P L SL L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207
Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSM 856
N FF L+ L V+D S N++ +LQ F +S+
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSL 250
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK-IPDSIGFLKNLQSLSLYNNRL 619
L Y+D+S+ ++ SL +L +A NSF +PD L+NL L L +L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 620 TGELPSFFTNGSQLTLMDLGKN 641
P+ F + S L ++++ N
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHN 209
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 113/269 (42%), Gaps = 44/269 (16%)
Query: 291 SLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTL--RGDLSEIIQNLSDGCTKTSLAW 347
S L L SN+ + +P + + L L+LS N L +G S+ SD T TSL +
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-----SDFGT-TSLKY 82
Query: 348 LFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG----TINKSVGQLVKLESLFLHNNSLR 403
L L N + NF G L+ L ++ L ++ S+ L+ L+ H
Sbjct: 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--- 139
Query: 404 GVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQ-LSQVNLGSCKIGPRFPKWLRNQ 462
V + LS+L +L +A NS F D + L+ ++L C++ P +
Sbjct: 140 -VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 463 N--QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDI 520
+ Q+L++ +N DT P N +L + S N I +
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLN---SLQVLDYSLNHI-------------------M 236
Query: 521 SSNQFEGPIPQLPLNASFLNLSKNKFSGS 549
+S + E + P + +FLNL++N F+ +
Sbjct: 237 TSKKQE--LQHFPSSLAFLNLTQNDFACT 263
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 164 LQVLDIGFNSLISGEN----LEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALY 219
L+ LD+ FN +I+ + LE L HL D SNL + S + LS L+ L
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHL------DFQHSNLKQMSEFSVFLS----LRNLI 448
Query: 220 LISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQ 279
+ T + + N +SLEV+ + GN+ ++ P +F NL ++L QL+
Sbjct: 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLE 507
Query: 280 GSIPEAFGHMPSLNTLFLASNQF 302
P AF + SL L ++ N F
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNNF 530
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 21/145 (14%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 100
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160
Query: 403 RGVISEAFLSNLSNLTILYLADNSL 427
+ + SNL+NL L L+ N +
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 778 LAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836
L+ L L ++ N+ P I +L++L FLDLS+ Q P++ + LS L V+++S+
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 837 NNL 839
NN
Sbjct: 528 NNF 530
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 754 LGLVKILDLSSNKLGGE-VPEEIMDLAGLIALNLSRNTLTGQITP-KIGQLKSLDFLDLS 811
L +++L ++ N +P+ +L L L+LS+ L Q++P L SL L++S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 526
Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSM 856
N FF L+ L V+D S N++ +LQ F +S+
Sbjct: 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSSL 569
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK-IPDSIGFLKNLQSLSLYNNRL 619
L Y+D+S+ ++ SL +L +A NSF +PD L+NL L L +L
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 620 TGELPSFFTNGSQLTLMDLGKN 641
P+ F + S L ++++ N
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHN 528
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 132/291 (45%), Gaps = 57/291 (19%)
Query: 147 NTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWM 206
N + A PL NL+ L L + FN+ I+ +++ L +L++L L+LS + +S S
Sbjct: 94 NNQIADITPL--ANLTNLTGLTL-FNNQIT--DIDPLKNLTNLNRLELSSNTISDIS--- 145
Query: 207 QVLSKLDSLKALYLIS--CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTD-SIYPWLFNV 263
LS L SL+ L + DL P L + T+LE + I N ++D S+ L N+
Sbjct: 146 -ALSGLTSLQQLNFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNL 196
Query: 264 SSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYN 323
S + +NQ+ P G + +L+ L L NQ ++I +L ++ NL L L+ N
Sbjct: 197 ESLIAT-----NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANN 248
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRL----- 378
I NL+ T L L L +N+I+ P G ++L L + N+L
Sbjct: 249 Q--------ISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 299
Query: 379 ---------------NGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNL 414
N + V L KL+ LF NN + V S A L+N+
Sbjct: 300 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 350
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 127/288 (44%), Gaps = 36/288 (12%)
Query: 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR 618
+ L I+ SNN L+ P L + + NN P + L NL L+L+NN+
Sbjct: 63 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 619 LTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIP--LQL 676
+T P N + L ++L N +S +I G F + L
Sbjct: 119 ITDIDP--LKNLTNLNRLELSSNTIS-DISALSG-------LTSLQQLNFGNQVTDLKPL 168
Query: 677 CHLANVQILDLSSNNISGI-IPKCFNNFTAM--THEKGSNLT---LISNY-YTSLAYDSL 729
+L ++ LD+SSN +S I + N ++ T+ + S++T +++N SL + L
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 228
Query: 730 K---TTKSYFDKAVLTWKGSQYEYQSTL-GLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785
K T S + L +Q + L GL K+ +L KLG I LAGL AL
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL---KLGANQISNISPLAGLTALT 285
Query: 786 ---LSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP-SSLSQLSRL 829
L+ N L I+P I LK+L +L L N P SSL++L RL
Sbjct: 286 NLELNENQL-EDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 11/139 (7%)
Query: 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYN 323
+NL LI L NQLQ F + +L L L NQ + +P + + NL L L +N
Sbjct: 85 TNLTYLI-LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 324 TLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGT 381
L+ + L T+L L LD+N++ SLP F + LK+LS+ +N+L
Sbjct: 144 QLQSLPKGVFDKL------TNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 382 INKSVGQLVKLESLFLHNN 400
+ +L L ++L NN
Sbjct: 197 PDGVFDRLTSLTHIWLLNN 215
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 297 LASNQFREIPKSLGNMCNLKSLT-------LSYNTLRGDLSEIIQNLSDGCTKTSLAWLF 349
+ N+ I + + N ++KS+ + Y L G+ I L + T+L +L
Sbjct: 35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKE---LTNLTYLI 91
Query: 350 LDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVIS 407
L N++ SLPN F ++LK L + N+L + +L L L+L++N L+ +
Sbjct: 92 LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPK 150
Query: 408 EAFLSNLSNLTILYLADNSL 427
F L+NLT L L +N L
Sbjct: 151 GVF-DKLTNLTRLDLDNNQL 169
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 30/175 (17%)
Query: 535 NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNS 594
N +L L NK IS L +T L Y+ L+ N L + + +L L L N
Sbjct: 64 NVRYLALGGNKLH-DISALKELTN--LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 595 FFGKIPDSI-GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE 653
+PD + L NL L LY+N+L F + LT +DL N L + E
Sbjct: 121 L-QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-----LPE 174
Query: 654 GXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
G L ++ L L+ N + + F+ T++TH
Sbjct: 175 GVFD--------------------KLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 45/232 (19%)
Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP- 306
L NN I F NL LI L +N++ P AF + L L+L+ NQ +E+P
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 307 --------------------KSLGNMCN-----------LKSLTLSYNTLRG--DLSEI- 332
KS+ N N LKS + +G LS I
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 333 -----IQNLSDGCTKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSV 386
I + G SL L LD N+IT + G ++L +L ++ N ++ N S+
Sbjct: 178 IADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP 438
L L L+NN L V L++ + ++YL +N+++ S+D+ PP
Sbjct: 237 ANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 45/232 (19%)
Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP- 306
L NN I F NL LI L +N++ P AF + L L+L+ NQ +E+P
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLI-LINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Query: 307 --------------------KSLGNMCN-----------LKSLTLSYNTLRG--DLSEI- 332
KS+ N N LKS + +G LS I
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 333 -----IQNLSDGCTKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSV 386
I + G SL L LD N+IT + G ++L +L ++ N ++ N S+
Sbjct: 178 IADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPP 438
L L L+NN L V L++ + ++YL +N+++ S+D+ PP
Sbjct: 237 ANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 34/273 (12%)
Query: 158 LGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKA 217
L NL +L L IG N + L+ L++L L + + S++S +N + S +L A
Sbjct: 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKXYSL--NLGA 141
Query: 218 LYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL--INLGS 275
+ +S DL P L++ T L + + + + D + P +NL +L ++L
Sbjct: 142 NHNLS-DLSP--------LSNXTGLNYLTVTESKVKD-VTPI-----ANLTDLYSLSLNY 186
Query: 276 NQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQN 335
NQ++ P + SL+ NQ +I + N L SL + N I +
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDI-TPVANXTRLNSLKIGNNK--------ITD 235
Query: 336 LSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESL 395
LS + L WL + +N+I+ + + LK L++ +N+++ + L +L SL
Sbjct: 236 LSPLANLSQLTWLEIGTNQIS-DINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSL 292
Query: 396 FLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428
FL+NN L G + L+NLT L+L+ N +T
Sbjct: 293 FLNNNQL-GNEDXEVIGGLTNLTTLFLSQNHIT 324
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
+ + SNL+NL L L+ N + + D
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 20 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
+ + SNL+NL L L+ N + + D
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
Query: 261 FNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASN-QFREI-PKSLGNMCNLKSL 318
F NL ++ L SN L G AF + L L L+ N Q R + P + + +L +L
Sbjct: 51 FQSCRNLT-ILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 319 TLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANN 376
L R L E+ L G +L +L+L N + +LP+ F +L L + N
Sbjct: 110 HLD----RCGLQELGPGLFRGLA--ALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGN 162
Query: 377 RLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWI 436
R+ + L L+ L LH N + V AF +L L LYL N+L++ + +
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF-RDLGRLMTLYLFANNLSMLPAEVLV 221
Query: 437 PPFQLSQVNL 446
P L + L
Sbjct: 222 PLRSLQYLRL 231
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 46/164 (28%), Positives = 63/164 (38%), Gaps = 22/164 (13%)
Query: 291 SLNTLFLASNQFREIPKSLGNMC-NLKSLTLSYNTLRG---------------DLSEIIQ 334
S +FL N+ +P + C NL L L N L G DLS+ Q
Sbjct: 32 SSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQ 91
Query: 335 -NLSDGCTKTSLAWLF---LDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQL 389
+ D T L L LD + P F G ++L+ L + +N L + + L
Sbjct: 92 LRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
Query: 390 VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSH 433
L LFLH N + V AF L +L L L N + H
Sbjct: 152 GNLTHLFLHGNRIPSVPEHAF-RGLHSLDRLLLHQNHVARVHPH 194
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 48/252 (19%)
Query: 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425
+S +R+ + NR++ S L L+LH+N+L G+ + AF + L+ L L L+DN
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAF-TGLTLLEQLDLSDN 89
Query: 426 SLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWN 485
+ QL V+ P R + +L + G+ + P F
Sbjct: 90 A-------------QLRVVD----------PTTFRGLGHLHTLHLDRCGLQELGPGLF-R 125
Query: 486 QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNK 545
L + L +N ++ LP+ + R + + N+ IP +P +A
Sbjct: 126 GLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNR----IPSVPEHA--------- 171
Query: 546 FSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF 605
F G H LD + L N ++ P + L L L N+ + +
Sbjct: 172 FRGL---------HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVP 222
Query: 606 LKNLQSLSLYNN 617
L++LQ L L +N
Sbjct: 223 LRSLQYLRLNDN 234
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 21 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
+ + SNL+NL L L+ N + + D
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 20 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
+ + SNL+NL L L+ N + + D
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 302 FREIPKSLGNMCNLKSLTLSYNTLRG---------------DLSEI-IQNLSDGCTKT-- 343
F +IP +L + K+L LS+N LR DLS IQ + DG ++
Sbjct: 21 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 344 SLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSL 402
L+ L L N I +L F G SSL++L L N +G L L+ L + +N +
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 403 RGVISEAFLSNLSNLTILYLADNSLTLEFSHD 434
+ + SNL+NL L L+ N + + D
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDL 329
+NL NQLQ F + L TL LA+NQ +P + ++ L L L N L+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVG 387
S + L T L L L++N++ S+P F ++L+ LS++ N+L + +
Sbjct: 124 SGVFDRL------TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 388 QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA 423
+L KL+++ L N + S ILYL+
Sbjct: 177 RLGKLQTITLFGNQF----------DCSRCEILYLS 202
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 186 LSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVI 245
L+ L +L+L ++ L S V L L L L + L ++P + T L+ +
Sbjct: 58 LTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLA-SLPLG--VFDHLTQLDKL 112
Query: 246 VILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFRE 304
+ GN L S+ +F+ + L EL L +NQLQ SIP AF + +L TL L++NQ +
Sbjct: 113 YLGGNQL-KSLPSGVFDRLTKLKEL-RLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 305 IPK-SLGNMCNLKSLTLSYNTLRGDLSEII 333
+P + + L+++TL N EI+
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 343 TSLAWLFLDSNEI-TGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNS 401
T L WL LD N++ T S F + L L +ANN+L L +L+ L+L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 402 LRGVISEAFLSNLSNLTILYLADNSL 427
L+ + S F L+ L L L N L
Sbjct: 119 LKSLPSGVF-DRLTKLKELRLNTNQL 143
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 532 LPLNASFLNLSKNKFSGSISFLCSITGH-KLDYIDLSNNLLSGRLPDCWSQFDSLAILNL 590
LP N + LNL+ N+ + + T + +L +D+ N +S P+ + L +LNL
Sbjct: 23 LPTNITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80
Query: 591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG-EIPT 649
+N + F NL L L +N + + F L +DL NGLS ++ T
Sbjct: 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Query: 650 WIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFN 701
+ S L + ++++ L+LSSN I P CF+
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 52/202 (25%)
Query: 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN-----LTLISNYYTSLAYDSL---- 729
L ++ L++ N+I GI F + + SN TL + + SLA+ L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 730 --KTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP-EEIMDLAGLIA--- 783
K S + +W LG +++LDL N++G E+ +E L +
Sbjct: 388 LTKNKISKIESDAFSW----------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 784 -----LNLSRNTLTGQITPKIGQL--------------------KSLDFLDLSRNQFFGS 818
L L+RN+ + P + +L ++L LDLS N
Sbjct: 438 SYNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 819 IPSSLSQLSRLSVMDLSYNNLS 840
L L +L ++DL +NNL+
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLA 517
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 109/433 (25%), Positives = 172/433 (39%), Gaps = 78/433 (18%)
Query: 267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTL 325
+++++NL N+L + F +L L L SN ++I + NL +L LS+N L
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 326 RGDL----------------SEIIQNLS----DGCTKTSLAWLFLDSNEITGSLPNFGGF 365
+ IQ L D +SL L L SN+I P G F
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP--GCF 191
Query: 366 SSLKR---LSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGV-ISEAFLSNLSNLTILY 421
++ R L + N +L ++ + + L L N S+R + +S + LS SN T L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKL-------CLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Query: 422 LADNSLT-LEFSHD-----------WIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLD 469
L +LT L+ S++ W+P QL L I F L + L+
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 470 ISNSGISDTVPNWFWNQTYNLSF--------FNLSNNQIKG------------KLPNLSS 509
+ S ++ + + SF N+ +N I G K +LS+
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Query: 510 RFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNN 569
F R +N+ + PL+ LNL+KNK S S S GH L+ +DL N
Sbjct: 363 SFTSLR----TLTNETFVSLAHSPLH--ILNLTKNKISKIESDAFSWLGH-LEVLDLGLN 415
Query: 570 LLSGRLP-DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL--TGELPSF 626
+ L W +++ + L+ N + +S + +LQ L L L PS
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 627 FTNGSQLTLMDLG 639
F LT++DL
Sbjct: 476 FQPLRNLTILDLS 488
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 532 LPLNASFLNLSKNKFSGSISFLCSITGH-KLDYIDLSNNLLSGRLPDCWSQFDSLAILNL 590
LP N + LNL+ N+ + + T + +L +D+ N +S P+ + L +LNL
Sbjct: 28 LPTNITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 85
Query: 591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG-EIPT 649
+N + F NL L L +N + + F L +DL NGLS ++ T
Sbjct: 86 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 145
Query: 650 WIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFN 701
+ S L + ++++ L+LSSN I P CF+
Sbjct: 146 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 197
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 52/202 (25%)
Query: 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN-----LTLISNYYTSLAYDSL---- 729
L ++ L++ N+I GI F + + SN TL + + SLA+ L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 392
Query: 730 --KTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP-EEIMDLAGLIA--- 783
K S + +W LG +++LDL N++G E+ +E L +
Sbjct: 393 LTKNKISKIESDAFSW----------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 442
Query: 784 -----LNLSRNTLTGQITPKIGQL--------------------KSLDFLDLSRNQFFGS 818
L L+RN+ + P + +L ++L LDLS N
Sbjct: 443 SYNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 500
Query: 819 IPSSLSQLSRLSVMDLSYNNLS 840
L L +L ++DL +NNL+
Sbjct: 501 NDDMLEGLEKLEILDLQHNNLA 522
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 532 LPLNASFLNLSKNKFSGSISFLCSITGH-KLDYIDLSNNLLSGRLPDCWSQFDSLAILNL 590
LP N + LNL+ N+ + + T + +L +D+ N +S P+ + L +LNL
Sbjct: 33 LPTNITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 90
Query: 591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG-EIPT 649
+N + F NL L L +N + + F L +DL NGLS ++ T
Sbjct: 91 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 150
Query: 650 WIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFN 701
+ S L + ++++ L+LSSN I P CF+
Sbjct: 151 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 202
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 52/202 (25%)
Query: 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN-----LTLISNYYTSLAYDSL---- 729
L ++ L++ N+I GI F + + SN TL + + SLA+ L
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 397
Query: 730 --KTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP-EEIMDLAGLIA--- 783
K S + +W LG +++LDL N++G E+ +E L +
Sbjct: 398 LTKNKISKIESDAFSW----------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 447
Query: 784 -----LNLSRNTLTGQITPKIGQL--------------------KSLDFLDLSRNQFFGS 818
L L+RN+ + P + +L ++L LDLS N
Sbjct: 448 SYNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 505
Query: 819 IPSSLSQLSRLSVMDLSYNNLS 840
L L +L ++DL +NNL+
Sbjct: 506 NDDMLEGLEKLEILDLQHNNLA 527
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDL 329
+NL NQLQ F + L TL LA+NQ +P + ++ L L L N L+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 330 SEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVG 387
S + L T L L L++N++ S+P F ++L+ LS++ N+L + +
Sbjct: 124 SGVFDRL------TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 388 QLVKLESLFLHNN 400
+L KL+++ L N
Sbjct: 177 RLGKLQTITLFGN 189
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 186 LSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVI 245
L+ L +L+L ++ L S V L L L L + L ++P + T L+ +
Sbjct: 58 LTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLA-SLPLG--VFDHLTQLDKL 112
Query: 246 VILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFRE 304
+ GN L S+ +F+ + L EL L +NQLQ SIP AF + +L TL L++NQ +
Sbjct: 113 YLGGNQL-KSLPSGVFDRLTKLKEL-RLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 305 IPK-SLGNMCNLKSLTL 320
+P + + L+++TL
Sbjct: 170 VPHGAFDRLGKLQTITL 186
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 343 TSLAWLFLDSNEI-TGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNS 401
T L WL LD N++ T S F + L L +ANN+L L +L+ L+L N
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 402 LRGVISEAFLSNLSNLTILYLADNSL 427
L+ + S F L+ L L L N L
Sbjct: 119 LKSLPSGVF-DRLTKLKELRLNTNQL 143
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 28/207 (13%)
Query: 353 NEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLS 412
N++ G LP FG L L++A N++ G ++E+L +N L+ + +
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399
Query: 413 NLSNLTILYLADNSLTLEFSHDWIP----PFQ---LSQVNLGSCKIGPRFPKWLRNQNQI 465
++S + + + N + ++ P PF+ +S +NL + +I +FPK L +
Sbjct: 400 SVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP 458
Query: 466 LS---------LDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFH---- 512
LS +I + + D N + TY L+ +L N KL LS F
Sbjct: 459 LSSINLXGNXLTEIPKNSLKDENEN--FKNTYLLTSIDLRFN----KLTKLSDDFRATTL 512
Query: 513 PYRPGIDISSNQFEGPIPQLPLNASFL 539
PY GID+S N F P PLN+S L
Sbjct: 513 PYLVGIDLSYNSF-SKFPTQPLNSSTL 538
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L + Y L ++ + EL L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP---YTRLTQLNLDRCELTKL- 70
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
+ G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 71 ---------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN+L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L + Y L ++ + EL L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP---YTRLTQLNLDRCELTKL- 70
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
+ G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 71 ---------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN+L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L T Y L ++ + EL L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLA---TLMPYTRLTQLNLDRCELTKL- 70
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
+ G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 71 ---------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN+L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L T Y L ++ + EL L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLA---TLMPYTRLTQLNLDRCELTKL- 70
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
+ G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 71 ---------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN+L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L ++ P+ L L
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLA-----TLMPY--------TRLTQLN 61
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
++ + + + G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L T Y L ++ + EL L
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA---TLMPYTRLTQLNLDRAELTKL- 70
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
+ G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 71 ---------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 291 SLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGC--TKTSLAW 347
S L L SN+ + +P + + L L+LS N IQ+L DG T L
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--------IQSLPDGVFDKLTKLTI 80
Query: 348 LFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
L+L N++ SLPN F + LK L++ N+L + +L L+ ++LH N
Sbjct: 81 LYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 343 TSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
+S L L+SN++ SLP+ F + L +LS++ N++ + +L KL L+LH N
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 401 SLRGVISEAFLSNLSNLTILYLADNSL 427
L+ + + F L+ L L L N L
Sbjct: 87 KLQSLPNGVF-DKLTQLKELALDTNQL 112
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 20/144 (13%)
Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
+P IPSS +T LE L +N S+ +F+ + L +L +L NQ+Q S+P+
Sbjct: 22 VPTGIPSS------ATRLE----LESNKLQSLPHGVFDKLTQLTKL-SLSQNQIQ-SLPD 69
Query: 285 A-FGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK 342
F + L L+L N+ + +P + + LK L L N L+ I L
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL------ 123
Query: 343 TSLAWLFLDSNEITGSLPNFGGFS 366
TSL ++L +N S P S
Sbjct: 124 TSLQKIWLHTNPWDCSCPRIDYLS 147
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L T Y L ++ + EL L
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA---TLMPYTRLTQLNLDRAELTKL- 70
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
+ G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 71 ---------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L ++ P+ L L
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLA-----TLMPY--------TRLTQLN 61
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
++ + + + G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 62 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L T Y L ++ + EL L
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA---TLMPYTRLTQLNLDRAELTKL- 70
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
+ G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 71 ---------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN L + L L+
Sbjct: 122 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQL-Q 90
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 140
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 221 ISCD------LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLG 274
++CD LPP +P L+ S +L L ++ P+ L L
Sbjct: 16 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLA-----TLMPY--------TRLTQLN 62
Query: 275 SNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ 334
++ + + + G +P L TL L+ NQ + +P + L L +S+N L ++
Sbjct: 63 LDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 122
Query: 335 NLSDGCTKTSLAWLFLDSNEITGSLPNF-GGFSSLKRLSIANNRLNGTINKSVGQLVKLE 393
L + L L+L NE+ P L++LS+ANN L + L L+
Sbjct: 123 GLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176
Query: 394 SLFLHNNSLRGVISEAFLSNLSNLTILY 421
+L L NSL + F S+L L+
Sbjct: 177 TLLLQENSLYTIPKGFFGSHLLPFAFLH 204
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG-QITPKIGQLKSLDFLDLSRNQFFG 817
IL LS N L +M L LNL R LT Q+ G L L LDLS NQ
Sbjct: 36 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQL-Q 91
Query: 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPSGT--QLQSFSTSMYAGNELCGLP 866
S+P L L+V+D+S+N L+ +P G L GNEL LP
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLP 141
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 225 LPPTIPSSD--LYL--NSSTSLEVIVI----------LGNNLTDSIYPWLFNVSSNLVEL 270
+P IP++ LYL N T LE V LG+N ++ +F+ + L +
Sbjct: 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT-V 92
Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326
++LG+NQL F + L LF+ N+ E+P+ + + +L L L N L+
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 34/164 (20%)
Query: 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGD 328
+++ L NQ+ P F + +L L+L SNQ +P + +++L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV------------FDSL--- 87
Query: 329 LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSV 386
T L L L +N++T LP+ F LK L + N+L + + +
Sbjct: 88 --------------TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131
Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLE 430
+L L L L N L+ + AF LS+LT YL N E
Sbjct: 132 ERLTHLTHLALDQNQLKSIPHGAF-DRLSSLTHAYLFGNPWDCE 174
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTLMDLGKNGLSG 645
IL L +N P L NL+ L L +N+L G LP F + +QLT++DLG N L+
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 646 EIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705
+P+ + + +P + L ++ L L N + I F+ ++
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 706 MTH 708
+TH
Sbjct: 161 LTH 163
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 48/313 (15%)
Query: 360 PNFGGFSSLKRLSIANNRLNG----TINKSVGQLVK-LESLFLHNNSLRGVISEAFLSNL 414
P+ F+ L R S+ + L+ ++N V + +K L+ L L N + + EAF L
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-L 313
Query: 415 SNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSG 474
NL +L L+ N L +S ++ +++ ++L I + + ++ +LD+ ++
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 475 ISD-----TVPNWFW--NQTYNLSFFNLSNNQI---KGKLPNLSSRFHPYRPGIDISSNQ 524
++ ++P+ F N+ L NL+ N I + +L NL + R
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR--------- 424
Query: 525 FEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL--SGRLPDCWSQF 582
+P L + L L++N+FS L+ + L N+L + CW F
Sbjct: 425 ----VPHLQI----LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476
Query: 583 DSLAILNLA--NNSFFGKIPDSI-GFLKNLQSLSLYNNRLT----GELPSFFTNGSQLTL 635
+ L+ L + N+++ +P + L L+ LSL +NRLT +LP + L +
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEI 530
Query: 636 MDLGKNGLSGEIP 648
+D+ +N L P
Sbjct: 531 LDISRNQLLAPNP 543
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLS 811
TL +K+L+L+ NK+ E L L LNLS N L + L + ++DL
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK--IPSGTQLQSFSTSMYAGNELCGLPLPN 869
+N + L +L +DL N L+ IPS + +GN+L LP N
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI------FLSGNKLVTLPKIN 400
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 139/595 (23%), Positives = 226/595 (37%), Gaps = 102/595 (17%)
Query: 362 FGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTIL 420
F +L RL ++ N++ ++ S G+L L+S+ +N + ++ E L L T+
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI-FLVCEHELEPLQGKTLS 177
Query: 421 Y--LADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILS-LDISNSGISD 477
+ LA NSL S DW G C + P +N +L LD+S +G +
Sbjct: 178 FFSLAANSLYSRVSVDW-----------GKC-MNPF-------RNMVLEILDVSGNGWTV 218
Query: 478 TVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEG----PIPQLP 533
+ F N F+L + + FH + D N F G + L
Sbjct: 219 DITGNFSNAISKSQAFSLI---LAHHIMGAGFGFHNIK---DPDQNTFAGLARSSVRHLD 272
Query: 534 LNASF-----------------LNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLP 576
L+ F LNL+ NK + I+ L ++LS NLL
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYS 331
Query: 577 DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG-----ELPSFFTNGS 631
+ +A ++L N + FL+ LQ+L L +N LT +P F +G+
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN 391
Query: 632 QLTLMDLGKNGLSGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNN 691
+ L+ L K L+ + + E N I L + ++QIL L+ N
Sbjct: 392 K--LVTLPKINLTANL-IHLSENRLE-----------NLDILYFLLRVPHLQILILNQNR 437
Query: 692 ISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQ 751
S C + T + L L N LA+++ L W +
Sbjct: 438 FSS----CSGDQTPSENPSLEQLFLGEN-MLQLAWET-----------ELCW-----DVF 476
Query: 752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLS 811
L +++L L+ N L P L L L+L+ N LT + +L+ LD+S
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDIS 534
Query: 812 RNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNK 870
RNQ P LSV+D+++N K +L +F + N + G P
Sbjct: 535 RNQLLAPNPDVFVS---LSVLDITHN----KFICECELSTFINWLNHTNVTIAGPPADIY 587
Query: 871 CPDEDSAPGPGKDDANTSEDEDQFITLGFYVSLILGFFVGFWGFCGTLLVKSSWR 925
C DS G +T +++ + SL + V F T+L + +R
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFR 642
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 246 VILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI 305
+ L N I P F+ L I+L +NQ+ P+AF + SLN+L L N+ E+
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 306 PKSL 309
PKSL
Sbjct: 96 PKSL 99
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
I L N + P +S + L ++L+NN PD+ L++L SL LY N++T EL
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 624 PSFFTNG 630
P G
Sbjct: 96 PKSLFEG 102
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 246 VILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI 305
+ L N I P F+ L I+L +NQ+ P+AF + SLN+L L N+ E+
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 306 PKSL 309
PKSL
Sbjct: 96 PKSL 99
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
I L N + P +S + L ++L+NN PD+ L++L SL LY N++T EL
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 624 PSFFTNG 630
P G
Sbjct: 96 PKSLFEG 102
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 260 LFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL 309
LF+ NL E I GSN+L+ FG MP L L LASNQ + +P +
Sbjct: 165 LFDDLENL-ESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSN--LVELINLGSNQLQGSIPEAFGHMPSLNTLFL 297
+ ++ G+ SI +L VS + E NLG N + + G L
Sbjct: 75 VQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHG----LKRFRF 130
Query: 298 ASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITG 357
+ + IP +L + ++++L S+ LR ++ E+ +L D +L + SN++
Sbjct: 131 TTRRLTHIPANL--LTDMRNL--SHLELRANIEEMPSHLFDDLE--NLESIEFGSNKLR- 183
Query: 358 SLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
+P FG LK+L++A+N+L + +L L+ ++LH N
Sbjct: 184 QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 41/177 (23%)
Query: 225 LPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE 284
+P IP+ YL+ L N S+ +F+ ++L +L LG N+LQ
Sbjct: 22 VPTGIPAQTTYLD----------LETNSLKSLPNGVFDELTSLTQLY-LGGNKLQSLPNG 70
Query: 285 AFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
F + SL L L++NQ + +P + + LK L L+ N L Q+L DG
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL--------QSLPDGV--- 119
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
F + LK L + N+L + +L L+ ++LH+N
Sbjct: 120 ------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 224 DLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIP 283
++P IPS+ YLN ++ NN+ I F +L E++ LG N ++
Sbjct: 68 EVPQGIPSNTRYLN---------LMENNI-QMIQADTFRHLHHL-EVLQLGRNSIRQIEV 116
Query: 284 EAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNT---------------LRG 327
AF + SLNTL L N IP + + L+ L L N +R
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176
Query: 328 DLSEI--IQNLSDGCTKT--SLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN 383
DL E+ ++ +S+G + +L +L L I +PN L+ L ++ N
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRP 235
Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQ 440
S L L+ L++ N+ + + AF L++L L LA N+L+ HD P +
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLS-SLPHDLFTPLR 290
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 362 FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF--LSNLSNLTI 419
F G +SL L + +N L + + L KL L+L NN + + S AF + +L L +
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 420 LYLADNSLTLEFSHDWIPPFQLSQVNLGSCKI 451
L E + + + F L +NLG C I
Sbjct: 179 GELKKLEYISEGAFEGL--FNLKYLNLGMCNI 208
>pdb|3F29|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|3F29|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|2ZO5|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|2ZO5|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|3D1I|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3D1I|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3GM6|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3GM6|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3FO3|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3FO3|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3MMO|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3MMO|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3LG1|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LG1|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LGQ|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
pdb|3LGQ|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
Length = 525
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 171 FNSLISG-----ENLEWLSHLSSLI---YLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
F+ LI+G E+ E SH L+ +D ++ +F NW +V + +++ + +
Sbjct: 100 FDKLIAGHGFAFEHAEPRSHAFMLVDHFVVDRAYGGRFQFKNWQKVTDGMGAVRGAWTVL 159
Query: 223 CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLF 261
D P +L+ + + V L D I W +
Sbjct: 160 TDADPESSDQRRFLSQTATAANPVCLNCKTQDHILDWAY 198
>pdb|2OT4|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
pdb|2OT4|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
Length = 525
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 171 FNSLISG-----ENLEWLSHLSSLI---YLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
F+ LI+G E+ E SH L+ +D ++ +F NW +V + +++ + +
Sbjct: 100 FDKLIAGHGFAFEHAEPRSHAFMLVDHFVVDRAYGGRFQFKNWQKVTDGMGAVRGAWTVL 159
Query: 223 CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLF 261
D P +L+ + + V L D I W +
Sbjct: 160 TDADPESSDQRRFLSQTATAANPVCLNCKTQDHILDWAY 198
>pdb|3SCE|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3SCE|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3S7W|A Chain A, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3S7W|B Chain B, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3OWM|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
pdb|3OWM|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
Length = 519
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 171 FNSLISG-----ENLEWLSHLSSLI---YLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
F+ LI+G E+ E SH L+ +D ++ +F NW +V + +++ + +
Sbjct: 96 FDKLIAGHGFAFEHAEPRSHAFMLVDHFVVDRAYGGRFQFKNWQKVTDGMGAVRGAWTVL 155
Query: 223 CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLF 261
D P +L+ + + V L D I W +
Sbjct: 156 TDADPESSDQRRFLSQTATAANPVCLNCKTQDHILDWAY 194
>pdb|3RKH|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
pdb|3RKH|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
Length = 520
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 171 FNSLISG-----ENLEWLSHLSSLI---YLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
F+ LI+G E+ E SH L+ +D ++ +F NW +V + +++ + +
Sbjct: 96 FDKLIAGHGFAFEHAEPRSHAFMLVDHFVVDRAYGGRFQFKNWQKVTDGMGAVRGAWTVL 155
Query: 223 CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLF 261
D P +L+ + + V L D I W +
Sbjct: 156 TDADPESSDQRRFLSQTATAANPVCLNCKTQDHILDWAY 194
>pdb|3UU9|A Chain A, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
pdb|3UU9|B Chain B, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
Length = 520
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 171 FNSLISG-----ENLEWLSHLSSLI---YLDLSFSNLSKFSNWMQVLSKLDSLKALYLIS 222
F+ LI+G E+ E SH L+ +D ++ +F NW +V + +++ + +
Sbjct: 96 FDKLIAGHGFAFEHAEPRSHAFMLVDHFVVDRAYGGRFQFKNWQKVTDGMGAVRGAWTVL 155
Query: 223 CDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLF 261
D P +L+ + + V L D I W +
Sbjct: 156 TDADPESSDQRRFLSQTATAANPVCLNCKTQDHILDWAY 194
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 51/209 (24%)
Query: 273 LGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-------------------GNMC 313
L +N++ +AF + L L+++ N EIP +L G
Sbjct: 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS 144
Query: 314 NLKSLT---------------------LSYNTLR---GDLSEIIQNLSDGCTKTSLAWLF 349
L+++ L N LR L+ I ++L + +L L
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE-----TLNELH 199
Query: 350 LDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISE 408
LD N+I L + +S L RL + +N++ N S+ L L L L NN L V
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV--P 257
Query: 409 AFLSNLSNLTILYLADNSLTLEFSHDWIP 437
A L +L L ++YL N++T +D+ P
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCP 286
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 36/256 (14%)
Query: 586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG 645
+L+L NN D L++L +L L NN+++ F+ +L + + KN L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 646 EIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705
EIP ++P L L + N I + F+
Sbjct: 116 EIPP---------------------NLPSSLVELR------IHDNRIRKVPKGVFSGLRN 148
Query: 706 MTH-EKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS 764
M E G N L ++ + A+D LK +A LT G + TL L L
Sbjct: 149 MNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLT--GIPKDLPETLNE---LHLDH 202
Query: 765 NKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLS 824
NK+ E+++ + L L L N + + L +L L L N+ +P+ L
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLP 261
Query: 825 QLSRLSVMDLSYNNLS 840
L L V+ L NN++
Sbjct: 262 DLKLLQVVYLHTNNIT 277
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 19/170 (11%)
Query: 501 KGKLPNLSSRFHPYRPGIDISSNQFE------GPIPQLPLNASFLNLSKNKFSGSISFLC 554
K +LPN+ Y +D+S N P L++ L+ + F S +F
Sbjct: 27 KQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-- 84
Query: 555 SITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSL 614
+ L Y+DLS+N L +S +L +L L NN ++ + LQ L L
Sbjct: 85 -VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 615 YNNRLTGELPSFFTNGS---QLTLMDLGKNGLSG-------EIPTWIGEG 654
N+++ +G+ +L L+DL N L ++P W+ G
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 348 LFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVIS 407
L+LD N+ T + L + ++NNR++ N+S + +L +L L N LR +
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 408 EAFLSNLSNLTILYLADNSLTL 429
F L +L +L L N +++
Sbjct: 96 RTF-DGLKSLRLLSLHGNDISV 116
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 36/170 (21%)
Query: 267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326
+V N G L IP + L+L NQF +PK L N +L + LS N
Sbjct: 14 VVRCSNKGLKVLPKGIPR------DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-- 65
Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSV 386
I LS+ +F + L L ++ NRL ++
Sbjct: 66 ------ISTLSNQ---------------------SFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 387 GQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWI 436
L L L LH N + V+ E ++LS L+ L + N L + + W+
Sbjct: 99 DGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLYCDCNMQWL 147
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620
L IDLSNN +S +S L L L+ N P + LK+L+ LSL+ N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 621 GELPSFFTNGSQLTLMDLGKNGL 643
F + S L+ + +G N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 25/113 (22%)
Query: 596 FGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGX 655
F +P + K+L + L NNR++ F+N +QL + L N L P
Sbjct: 43 FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP------- 95
Query: 656 XXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
F+G L ++++L L N+IS + FN+ +A++H
Sbjct: 96 ----------RTFDG--------LKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLR 326
V+ +L +++ + F H L L LA N+ +I + + +L L LS N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRLNGTINKS 385
S + +NL L L L N I +F G +LK L++ N+L +
Sbjct: 337 SIDSRMFENLD------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Query: 386 VGQLVKLESLFLHNN 400
+L L+ ++LH N
Sbjct: 391 FDRLTSLQKIWLHTN 405
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 343 TSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNS 401
T L L L NEI N F G + L +L+++ N L ++ L KLE L L N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 402 LRGVISEAFLSNLSNLTILYLADNSL 427
+R + ++FL L NL L L N L
Sbjct: 359 IRALGDQSFLG-LPNLKELALDTNQL 383
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 126/325 (38%), Gaps = 64/325 (19%)
Query: 343 TSLAWLFLDSNEI----TGSLPNFGGFSSLKRLSIANNRLNGTI--NKSVGQLVKLESLF 396
+SL L LD N+ TG+ F G ++L+ L++ L+G + L LE L
Sbjct: 79 SSLIILKLDYNQFLQLETGA---FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135
Query: 397 LHNNSLRGVISEAFLSNLSNLTILYLADNSLT-------LEFSHDWIPPFQLSQVNL--- 446
L +N+++ + +F N+ +L L N + L F +LS + L
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195
Query: 447 -----GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501
G K G F I +LD+S +G +++ F++ ++ +I+
Sbjct: 196 NEYWLGWEKCGNPF-----KNTSITTLDLSGNGFKESMAKRFFDA--------IAGTKIQ 242
Query: 502 GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKL 561
+ + + Y G F+ P N +F L SG +
Sbjct: 243 SLILS-----NSYNMGSSFGHTNFKDPD-----NFTFKGLEA---SG------------V 277
Query: 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF-LKNLQSLSLYNNRLT 620
DLS + + L +S F L L LA N KI D+ + L +L L+L N L
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 621 GELPSFFTNGSQLTLMDLGKNGLSG 645
F N +L ++DL N +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 165/385 (42%), Gaps = 72/385 (18%)
Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRG 327
+EL NLG S+PE H+ SL + + E+P+S LKSL + N L+
Sbjct: 76 LELNNLG----LSSLPELPPHLESLVASCNSLTELPELPQS------LKSLLVDNNNLKA 125
Query: 328 DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVG 387
LSD L +L + +N++ LP S LK + + NN L K +
Sbjct: 126 --------LSD--LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSL-----KKLP 169
Query: 388 QLVK-LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIP--PFQLSQV 444
L LE + NN L + L NL LT +Y +NSL +P P L +
Sbjct: 170 DLPPSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLK------KLPDLPLSLESI 220
Query: 445 NLGSCKIGPRFPKWLRNQN-QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK 503
G+ I P+ QN L+ +++ + T+P+ +L N+ +N +
Sbjct: 221 VAGN-NILEELPEL---QNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD- 271
Query: 504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDY 563
LP L +D+S N F G + +LP N +LN S N+ I LC + L+
Sbjct: 272 LPELPQSLT----FLDVSENIFSG-LSELPPNLYYLNASSNE----IRSLCDLPP-SLEE 321
Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
+++SNN L LP + + L +A+ + ++P+ +NL+ L + N L E
Sbjct: 322 LNVSNNKL-IELPALPPRLERL----IASFNHLAEVPE---LPQNLKQLHVEYNPLR-EF 372
Query: 624 PSFFTNGSQLTLMDLGKNGLSGEIP 648
P ++ DL N E+P
Sbjct: 373 PDIPE-----SVEDLRMNSHLAEVP 392
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 733 KSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLA-GLIALNLSRNTL 791
K++F A++T S E LD+S N L + A ++ LNLS N L
Sbjct: 390 KNFFKVALMTKNMSSLE---------TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 792 TGQI----TPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847
TG + PK+ LDL N+ SIP ++ L L ++++ N L +P G
Sbjct: 441 TGSVFRCLPPKVK------VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGV 492
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASN---QFREIPKSLGNMCNLKSLTLSYNTLRG 327
+N N S+ + + L TL L N F ++ NM +L++L +S N+L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 328 DL---------SEIIQNLSDG--------CTKTSLAWLFLDSNEITGSLPNFGGFSSLKR 370
S ++ NLS C + L L +N I + +L+
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
Query: 371 LSIANNRLNGTINKSVGQLVKLESLFLHNN 400
L++A+N+L + +L L+ ++LH+N
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 121/539 (22%), Positives = 211/539 (39%), Gaps = 77/539 (14%)
Query: 192 LDLSFSNLSKFSNWMQVLSKLD-SLKALYLISCDLPPTIPSSDLYLNSSTSLEV------ 244
L L +++ FSN ++ S +D S + L + DLPP + L NS + L +
Sbjct: 18 LALIVGSMTPFSNELE--SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFL 75
Query: 245 ----IVILGNNLTDSI--YPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLA 298
++ L +N S+ + +LFN +E +++ N+LQ + M SL L L+
Sbjct: 76 SELRVLRLSHNRIRSLDFHVFLFNQD---LEYLDVSHNRLQNI---SCCPMASLRHLDLS 129
Query: 299 SNQFREIP--KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEIT 356
N F +P K GN+ L L LS R + +L C L + E
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189
Query: 357 G-SLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLS 415
+PN + L + N+ + +N SV L L+ L N L + ++ LS
Sbjct: 190 SLQIPNT---TVLHLVFHPNSLFSVQVNMSVNALGHLQ---LSNIKLNDENCQRLMTFLS 243
Query: 416 NLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILS--LDISNS 473
LT N W +L Q PR ++L N ++ +D
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQF------FWPRPVEYLNIYNLTITERIDREEF 297
Query: 474 GISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPI-PQL 532
S+T + F S + ++ + + IS F + P
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM------LSISDTPFIHMVCPPS 351
Query: 533 PLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSG--RLPDCWSQFDSLAILNL 590
P + +FLN ++N F+ S+ CS T +L + L N L ++ SL L++
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410
Query: 591 ANNSFFGKIPD-SIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT 649
+ NS D + + +++ L+L +N LTG + F ++ ++DL N +
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRI------ 462
Query: 650 WIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708
SIP + HL +Q L+++SN + + F+ T++ +
Sbjct: 463 --------------------MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 742 TWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM--DLAGLIALNLSRNTLTGQITPK- 798
+ S ++ STL ++ L L N L +M +++ L L++S N+L +
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG-TQLQSFSTSMY 857
+S+ L+LS N GS+ L ++ V+DL +NN IP T LQ+
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELNV 480
Query: 858 AGNELCGLP 866
A N+L +P
Sbjct: 481 ASNQLKSVP 489
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816
VK+LDL +N++ +P+++ L L LN++ N L +L SL ++ L N +
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 817 GSIP 820
+ P
Sbjct: 511 CTCP 514
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 4/171 (2%)
Query: 532 LPLNASFLNLSKNKFSGSISFLCSITGH-KLDYIDLSNNLLSGRLPDCWSQFDSLAILNL 590
LP N + LNL+ N+ + T + +L +D N +S P+ L +LNL
Sbjct: 23 LPSNITVLNLTHNQLRRLPP--TNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG-EIPT 649
+N + F NL L L +N + + F N L +DL NGLS ++ T
Sbjct: 81 QHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT 140
Query: 650 WIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCF 700
+ S L+ ++++ LDLSSN + P CF
Sbjct: 141 GVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCF 191
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 98/447 (21%), Positives = 172/447 (38%), Gaps = 49/447 (10%)
Query: 417 LTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGIS 476
L +L L N L+ ++ L++++L S I +NQ ++ LD+S++G+S
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 477 DTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSN----------QFE 526
T N + + L + +D+SSN Q
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTI 194
Query: 527 GPIPQLPLNASFLNLSKNKFSGSISFLC-SITGHKLDYIDLSNNLLSGRLPDCWS--QFD 583
G + L LN + LN LC ++ + + L+NN L +S ++
Sbjct: 195 GKLFALLLNNAQLN------PHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWT 248
Query: 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
+L L+L+ N+ S +L +L+ LSL N + P F S L + L +
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR--- 305
Query: 644 SGEIPTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNF 703
+ + F L+ ++ + I SN +G++ +
Sbjct: 306 -----AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSL---KY 357
Query: 704 TAMTHEKGSNLTLISNYYTSLAYDSLKT---TKSYFDK---AVLTWKGSQYEYQSTLGLV 757
+++ S TL + + SLA+ L T TK++ K +W LG +
Sbjct: 358 LSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW----------LGQL 407
Query: 758 KILDLSSNKLGGEVP-EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF- 815
+ILDL N++ ++ +E L + + LS N T + SL L L R
Sbjct: 408 RILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALK 467
Query: 816 -FGSIPSSLSQLSRLSVMDLSYNNLSG 841
PS L L+++DLS NN++
Sbjct: 468 NVDISPSPFRPLRNLTILDLSNNNIAN 494
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 343 TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVG---QLVKLESLFLHN 399
T+ L L N+IT P G F SL +L+ N +N VG +L KL L LH
Sbjct: 40 TTTQVLHLYINQITKLEP--GVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHI 97
Query: 400 NSLRGVISEAFLSNLSNLTILYLADNSLTLEFS 432
N L+ + F NL +LT +YL +N E S
Sbjct: 98 NQLKSIPMGVF-DNLKSLTHIYLFNNPWDCECS 129
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 216 KALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGS 275
++L + +P T LY+N T LE P +F+ + L L NL
Sbjct: 29 RSLASVPAGIPTTTQVLHLYINQITKLE--------------PGVFDSLTQLTYL-NLAV 73
Query: 276 NQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSY 322
NQL F + L L L NQ + IP +G NLKSLT Y
Sbjct: 74 NQLTALPVGVFDKLTKLTHLALHINQLKSIP--MGVFDNLKSLTHIY 118
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 30/193 (15%)
Query: 674 LQLCHLANVQILDLSSNNISGIIPKCFNN----------FTAMT----HEKGSNLTLISN 719
LQL +L ++Q L+LS N G+ + F FT + H NL L+
Sbjct: 369 LQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLR- 427
Query: 720 YYTSLAYDSLKTTKSYF-----DKAVLTWKGSQYEYQS--------TLGLVKILDLSSNK 766
+L++ L T+ + D L +G+ ++ S +G ++IL LSS
Sbjct: 428 -VLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCN 486
Query: 767 LGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL 826
L + L + L+LS N+LTG + LK L +L+++ N P L L
Sbjct: 487 LLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPAL 545
Query: 827 SRLSVMDLSYNNL 839
S+ S+++LS+N L
Sbjct: 546 SQQSIINLSHNPL 558
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P+L +L L++NQ +I + + N+ L L+ N L ++
Sbjct: 60 QGIQYLPNLTSLNLSNNQITDI-SPIQYLPNVTKLFLNGNKLT--------DIKPLANLK 110
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
+L WLFLD N++ N + +NG + L +LESL+L NN
Sbjct: 111 NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 165
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT 428
+ + LS L+ L L L DN ++
Sbjct: 166 ITDI---TVLSRLTKLDTLSLEDNQIS 189
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLS 330
+NL +NQ+ P ++P++ LFL N+ +I K L N+ NL L L N ++ S
Sbjct: 71 LNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS 127
Query: 331 EI--------------IQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANN 376
I +++ L L+L +N+IT + + L LS+ +N
Sbjct: 128 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDN 186
Query: 377 RLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTI 419
+++ + + L KL++L+L N + + + A L NL L +
Sbjct: 187 QISDIV--PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 227
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 307 KSLGNM---CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFG 363
+SL M NLK L LS+N I +LS T L L ++ N L N
Sbjct: 54 QSLAGMQFFTNLKELHLSHNQ--------ISDLSPLKDLTKLEELSVNRNR----LKNLN 101
Query: 364 GFSS--LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILY 421
G S L RL + NN L T S+ L LE L + NN L+ ++ FLS L +L
Sbjct: 102 GIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLE---VLD 156
Query: 422 LADNSLT 428
L N +T
Sbjct: 157 LHGNEIT 163
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 292 LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSD-------GCTKTS 344
L +L L R +P S+ N+ NLKSL + + L L I +L GCT
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA-- 241
Query: 345 LAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRG 404
+ P FGG + LKRL + + T+ + +L +LE L LRG
Sbjct: 242 ----------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL-----DLRG 286
Query: 405 VISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN 445
++ LS L +L I L N + L +PP +Q++
Sbjct: 287 CVN---LSRLPSL-IAQLPANCIIL------VPPHLQAQLD 317
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 49/229 (21%)
Query: 263 VSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLS 321
+S+N L+NL NQ+Q +F H+ L L L+ N R I + + NL +L L
Sbjct: 62 ISTN-TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120
Query: 322 YNTL---------------------------------------RGDLSEI--IQNLSDGC 340
N L R DL E+ + +S+G
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 341 TK--TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLH 398
+ ++L +L L + +PN L L ++ N L+ S L+ L+ L++
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 399 NNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF-QLSQVNL 446
+ ++ + AF NL +L + LA N+LTL HD P L +++L
Sbjct: 240 QSQIQVIERNAF-DNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHL 286
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 8/154 (5%)
Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPE-AFGHMPSLNTLFLASNQFREIP 306
L NN +SI + FN +L L +LG + I E AF + +L L LA REIP
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRL-DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Query: 307 KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFS 366
+L + L L LS N LS I G W+ ++ F
Sbjct: 202 -NLTPLIKLDELDLSGN----HLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQ 255
Query: 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
SL +++A+N L + L LE + LH+N
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 113/279 (40%), Gaps = 51/279 (18%)
Query: 364 GFSSLKRL-SIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYL 422
G S+ RL ++ N++ S L LE L L N +R + AF + L+NL L L
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLEL 119
Query: 423 ADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNW 482
DN LT + ++ +L ++ WLRN N I +++P++
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKEL-------------WLRN-NPI-----------ESIPSY 154
Query: 483 FWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS 542
+N+ +L +L G+L LS IS FEG LN + NL
Sbjct: 155 AFNRIPSLRRLDL------GELKRLSY----------ISEGAFEGLSNLRYLNLAMCNLR 198
Query: 543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDS 602
+ I L + KLD +DLS N LS P + L L + + ++
Sbjct: 199 E------IPNLTPLI--KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250
Query: 603 IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641
L++L ++L +N LT FT L + L N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 33/144 (22%)
Query: 292 LNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLD 351
L L+L N E+P + N+ NL+ L LS+N L +E+ C + L + +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-----GSCFQ--LKYFYFF 301
Query: 352 SNEITGSLP-NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAF 410
N +T +LP FG +L+ L + N LE FL +++E
Sbjct: 302 DNMVT-TLPWEFGNLCNLQFLGVEGN--------------PLEKQFL------KILTEKS 340
Query: 411 LSNLSNLTILYLADNSLTLEFSHD 434
++ L I YL DN + H+
Sbjct: 341 VTGL----IFYLRDNRPEIPLPHE 360
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 249 GNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKS 308
GN+LT+ P SNL +++L N+L S+P G L + N +P
Sbjct: 256 GNSLTE--LPAEIKNLSNL-RVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 309 LGNMCNLKSLTLSYNTLRGDLSEIIQNLS 337
GN+CNL+ L + N L +I+ S
Sbjct: 312 FGNLCNLQFLGVEGNPLEKQFLKILTEKS 340
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 345 LAWLFLDSNEITGSLP-NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLR 403
L+ L L N I P +F G +SL+ L +L + +GQL+ L+ L + +N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 404 GVISEAFLSNLSNLTILYLADN 425
A+ SNL+NL + L+ N
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 88 LDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXN 147
LDL L+ KG+IS + L L+YLDLS N S S + +
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY--SDLGTNSLRHLD 382
Query: 148 TEFAGPIPL--QLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLS-KFSN 204
F G I + L LQ LD ++L L L+YLD+S++N F
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
Query: 205 WMQVLSKLDSLK 216
L+ L++LK
Sbjct: 443 IFLGLTSLNTLK 454
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 776 MDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL--SRLSVMD 833
+DL L +L L+ N G I+ K L SL +LDLSRN S S S L + L +D
Sbjct: 325 LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 834 LSYN 837
LS+N
Sbjct: 383 LSFN 386
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 345 LAWLFLDSNEITGSLP-NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLR 403
L+ L L N I P +F G +SL+ L +L + +GQL+ L+ L + +N +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 404 GVISEAFLSNLSNLTILYLADN 425
A+ SNL+NL + L+ N
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYN 158
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 88 LDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIXXXXXXXXXXXXN 147
LDL L+ KG+IS + L L+YLDLS N S S + +
Sbjct: 320 LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY--SDLGTNSLRHLD 377
Query: 148 TEFAGPIPL--QLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLS-KFSN 204
F G I + L LQ LD ++L L L+YLD+S++N F
Sbjct: 378 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 437
Query: 205 WMQVLSKLDSLK 216
L+ L++LK
Sbjct: 438 IFLGLTSLNTLK 449
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 776 MDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL--SRLSVMD 833
+DL L +L L+ N G I+ K L SL +LDLSRN S S S L + L +D
Sbjct: 320 LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 377
Query: 834 LSYN 837
LS+N
Sbjct: 378 LSFN 381
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 42/273 (15%)
Query: 168 DIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFS-NWMQVLSKLDSLKALYLISCDLP 226
D FN L+ + L ++ LS + + D + + L F+ + V+S+L ++ + + +P
Sbjct: 263 DESFNELL--KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 320
Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI---P 283
DL S +V I N + P F+ +E ++L N +
Sbjct: 321 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 380
Query: 284 EAFGHMPSLNTLFLASNQFREIPKS---LGNMCNLKSLTLSYNTLRG------------- 327
G PSL TL L+ N R + K+ L + NL SL +S NT
Sbjct: 381 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 440
Query: 328 -DLSEIIQNLSDGCTKTSLAWLFLDSNEITG-------------------SLPNFGGFSS 367
+LS + C +L L + +N + +LP+ F
Sbjct: 441 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPV 500
Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
L + IA+N+L + +L L+ ++LH N
Sbjct: 501 LLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLAS 299
T+ +V+ + N +T + P +F+ + L L +L +NQL F + L L L
Sbjct: 38 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRL-DLDNNQLTVLPAGVFDKLTQLTQLSLND 95
Query: 300 NQFREIPKSLGNMCNLKSLT 319
NQ + IP+ G NLKSLT
Sbjct: 96 NQLKSIPR--GAFDNLKSLT 113
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLAS 299
T+ +V+ + N +T + P +F+ + L L +L +NQL F + L L L
Sbjct: 30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRL-DLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 300 NQFREIPKSLGNMCNLKSLT 319
NQ + IP+ G NLKSLT
Sbjct: 88 NQLKSIPR--GAFDNLKSLT 105
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 495 LSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASF---LNLSKNKFSGSIS 551
+S++ + G+LP+L +++ NQ G P AS L L +NK IS
Sbjct: 44 ISSDGLFGRLPHLVK--------LELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94
Query: 552 FLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSF 595
+ H+L ++L +N +S +P + +SL LNLA+N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 34/175 (19%)
Query: 590 LANNSFFGKIPDS--IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI 647
L N++ G+I G L +L L L N+LTG P+ F S + + LG+N + EI
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EI 93
Query: 648 PTWIGEGXXXXXXXXXXXXXFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT 707
+ G L ++ L+L N IS ++P F + ++T
Sbjct: 94 SNKMFLG------------------------LHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 708 HEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762
+L L SN + + L + K L ++ S + V+I DL
Sbjct: 130 -----SLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDL 177
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 248 LGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQF 302
LG N I +F + + ++ +NL NQ+ +P +F H+ SL +L LASN F
Sbjct: 85 LGENKIKEISNKMF-LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 62 QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNL---------------------------- 92
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N++ N + +NG + L +LESL+L NN
Sbjct: 93 --GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 145
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT 428
+ + LS L+ L L L DN ++
Sbjct: 146 ITDI---TVLSRLTKLDTLSLEDNQIS 169
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLAS 299
T+ +V+ + N +T + P +F+ + L L +L +NQL F + L L L
Sbjct: 30 TTTQVLYLYDNRIT-KLEPGVFDRLTQLTRL-DLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 300 NQFREIPKSLGNMCNLKSLT 319
NQ + IP+ G NL+SLT
Sbjct: 88 NQLKSIPR--GAFDNLRSLT 105
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS 644
G Q L LY+NR+T P F +QLT +DL N L+
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 59 QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNL---------------------------- 89
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N+I N + +NG + L +LESL+L NN
Sbjct: 90 --GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 142
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT 428
+ + LS L+ L L L DN ++
Sbjct: 143 ITDI---TVLSRLTKLDTLSLEDNQIS 166
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 106/273 (38%), Gaps = 42/273 (15%)
Query: 168 DIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFS-NWMQVLSKLDSLKALYLISCDLP 226
D FN L+ + L ++ LS + + D + + L F+ + V+S+L ++ + + +P
Sbjct: 237 DESFNELL--KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 227 PTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI---P 283
DL S +V I N + P F+ +E ++L N +
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 284 EAFGHMPSLNTLFLASNQFREIPKS---LGNMCNLKSLTLSYNTLRG------------- 327
G PSL TL L+ N R + K+ L + NL SL +S NT
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414
Query: 328 -DLSEIIQNLSDGCTKTSLAWLFLDSNEITG-------------------SLPNFGGFSS 367
+LS + C +L L + +N + +LP+ F
Sbjct: 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPV 474
Query: 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400
L + I+ N+L + +L L+ ++LH N
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 62 QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNL---------------------------- 92
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N++ N + +NG + L +LESL+L NN
Sbjct: 93 --GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 145
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT 428
+ + LS L+ L L L DN ++
Sbjct: 146 ITDI---TVLSRLTKLDTLSLEDNQIS 169
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL 754
+ I +YY A D + Y D + LTW+G Q++ ++ +
Sbjct: 13 SFIQHYYQLFANDRTQLGAIYIDASCLTWEGQQFQGKAAI 52
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 57 QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNL---------------------------- 87
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N++ N + +NG + L +LESL+L NN
Sbjct: 88 --GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 140
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT 428
+ + LS L+ L L L DN ++
Sbjct: 141 ITDI---TVLSRLTKLDTLSLEDNQIS 164
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 60 QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNL---------------------------- 90
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N++ N + +NG + L +LESL+L NN
Sbjct: 91 --GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 143
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT 428
+ + LS L+ L L L DN ++
Sbjct: 144 ITDI---TVLSRLTKLDTLSLEDNQIS 167
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 754 LGLVKILDLSSNKLGGE--VPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLS 811
LG ++ LDLS N + ++ +L+ L LNLS N G + + L+ LDL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 812 RNQFFGSIPSS-LSQLSRLSVMDLSY 836
+ + P S L L V++L+Y
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTY 431
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 753 TLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSR 812
T+G +++L LSS L + L + ++LS N+LT + LK + +L+L+
Sbjct: 471 TVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAA 529
Query: 813 NQFFGSIPSSLSQLSRLSVMDLSYNNL 839
N P L LS+ S ++LS+N L
Sbjct: 530 NSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 41/146 (28%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 60 QGIQYLPNVTKLFLNGNKLTDI-KPLANLKNL---------------------------- 90
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N++ N + +NG + L +LESL+L NN
Sbjct: 91 --GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 143
Query: 402 LRGVISEAFLSNLSNLTILYLADNSL 427
+ + LS L+ L L L DN +
Sbjct: 144 ITDI---TVLSRLTKLDTLSLEDNQI 166
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 301 QFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW 347
+FR IP L +C L Y LRG+L+ +++ + CT + +
Sbjct: 385 EFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVY 431
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLR 326
VEL+NL Q++ AF + ++ L++ N R +P + N+ L L L R
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE----R 126
Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRL 378
DLS + + + K L L + +N + + F +SL+ L +++NRL
Sbjct: 127 NDLSSLPRGIFHNTPK--LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%)
Query: 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL 623
+DL N + D ++ F L L L N P + L NL++L L +NRL
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 624 PSFFTNGSQLTLMDLGKNGL 643
FT S LT +D+ +N +
Sbjct: 97 LGVFTGLSNLTKLDISENKI 116
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL 754
+ I +YY D + Y D + LTWKG Q++ ++ +
Sbjct: 13 SFIQHYYQLFDNDRTQLGAIYIDASCLTWKGQQFQGKAAI 52
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 57 QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNL---------------------------- 87
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N+I N + +NG + L +LESL+L NN
Sbjct: 88 --GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 140
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLT 428
+ + LS L+ L L L DN ++
Sbjct: 141 ITDI---TVLSRLTKLDTLSLEDNQIS 164
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 46/163 (28%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 80 QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNL---------------------------- 110
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N+I N + +NG + L +LESL+L NN
Sbjct: 111 --GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 163
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
+ + LS L+ L L L DN ++ D +P L+++
Sbjct: 164 ITDI---TVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKL 198
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 46/163 (28%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 80 QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNL---------------------------- 110
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N+I N + +NG + L +LESL+L NN
Sbjct: 111 --GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 163
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
+ + LS L+ L L L DN ++ D +P L+++
Sbjct: 164 ITDI---TVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKL 198
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 46/163 (28%)
Query: 284 EAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343
+ ++P++ LFL N+ +I K L N+ NL
Sbjct: 80 QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNL---------------------------- 110
Query: 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIAN--NRLNGTINKSVGQLVKLESLFLHNNS 401
WLFLD N+I N + +NG + L +LESL+L NN
Sbjct: 111 --GWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLV-----HLPQLESLYLGNNK 163
Query: 402 LRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQV 444
+ + LS L+ L L L DN ++ D +P L+++
Sbjct: 164 ITDI---TVLSRLTKLDTLSLEDNQIS-----DIVPLAGLTKL 198
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 275 SNQLQGSIPEAFGHMPSLN----------TLFLASNQFREIPKSLGNMCNLKSLTLSYNT 324
SNQ IPE H+P T+ A+ F+++P+ L+ + S N
Sbjct: 19 SNQKLNKIPE---HIPQYTAELRLNNNEFTVLEATGIFKKLPQ-------LRKINFSNN- 67
Query: 325 LRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTIN 383
+++I + +G + + + L SN + F G SLK L + +NR+ N
Sbjct: 68 ---KITDIEEGAFEG--ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122
Query: 384 KSVGQLVKLESLFLHNNSLRGVISEAF--LSNLSNLTIL 420
S L + L L++N + V AF L +LS L +L
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 28/201 (13%)
Query: 156 LQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNL------SKFSNWM--- 206
LQL NLS LQ L++ +N +S + E L LDL+F+ L S F N
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 207 --------------QVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNL 252
Q+ L +L+ L L P L + LE++V+ +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 253 TDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGN 311
+ SI F S ++ ++L N+L S EA H+ + L LASN I P L
Sbjct: 489 S-SIDQHAF-TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545
Query: 312 MCNLKSLTLSYNTLRGDLSEI 332
+ +++ L N L S I
Sbjct: 546 LSQQRTINLRQNPLDCTCSNI 566
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 25/123 (20%)
Query: 434 DW-IPPFQLSQVNLGSCKIGPRFPKWL------RNQNQILSLDISNSGISDTVPNWFWNQ 486
DW IPP +NL GP FP+ L R++N L ++ G +D P
Sbjct: 1 DWVIPP-----INLPENSRGP-FPQELVRIRSDRDKNLSLRYSVTGPG-ADQPPT----- 48
Query: 487 TYNLSFFNLSNNQIKGKLP---NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSK 543
+ N + Q+ P L +RFH +DI+ NQ E PI + +N +N ++
Sbjct: 49 --GIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPI-DIVINVIDMNDNR 105
Query: 544 NKF 546
+F
Sbjct: 106 PEF 108
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSL-GNMCNLKSLTLSYNTLR 326
VEL+NL Q++ AF + ++ L++ N R +P + N+ L L L R
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE----R 132
Query: 327 GDLSEIIQNLSDGCTKTSLAWLFLDSNEITG-SLPNFGGFSSLKRLSIANNRL 378
DLS + + + K L L + +N + F +SL+ L +++NRL
Sbjct: 133 NDLSSLPRGIFHNTPK--LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 25/123 (20%)
Query: 434 DW-IPPFQLSQVNLGSCKIGPRFPKWL------RNQNQILSLDISNSGISDTVPNWFWNQ 486
DW IPP +NL GP FP+ L R++N L ++ G +D P
Sbjct: 1 DWVIPP-----INLPENSRGP-FPQELVRIRSDRDKNLSLRYSVTGPG-ADQPPT----- 48
Query: 487 TYNLSFFNLSNNQIKGKLP---NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSK 543
+ N + Q+ P L +RFH +DI+ NQ E PI + +N +N ++
Sbjct: 49 --GIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPI-DIVINVIDMNDNR 105
Query: 544 NKF 546
+F
Sbjct: 106 PEF 108
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%)
Query: 590 LANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643
L NN P L NLQ L +N+LT F +QLT +DL N L
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,206,693
Number of Sequences: 62578
Number of extensions: 1123766
Number of successful extensions: 3849
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2700
Number of HSP's gapped (non-prelim): 646
length of query: 956
length of database: 14,973,337
effective HSP length: 108
effective length of query: 848
effective length of database: 8,214,913
effective search space: 6966246224
effective search space used: 6966246224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)