Query 046848
Match_columns 956
No_of_seqs 853 out of 5453
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.4E-70 7.4E-75 688.3 51.3 581 37-866 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.8E-56 1.3E-60 559.1 42.4 462 269-864 121-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.5E-37 9.8E-42 324.5 8.3 367 269-692 81-451 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.1E-36 4.5E-41 319.5 8.6 398 292-843 54-455 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 5.8E-39 1.3E-43 324.7 -12.0 176 583-816 362-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 9.5E-39 2.1E-43 323.2 -11.5 453 269-846 48-545 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.3E-35 2.8E-40 330.6 -2.9 416 269-839 71-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 8.2E-35 1.8E-39 324.2 -4.4 461 292-860 23-486 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.6E-33 3.5E-38 299.0 -4.3 369 111-669 5-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.6E-33 7.8E-38 296.3 -3.1 230 559-845 173-409 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.3E-24 2.9E-29 221.0 -2.5 423 291-837 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 3E-21 6.5E-26 243.5 24.3 346 307-814 552-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 1.5E-21 3.1E-26 227.4 16.7 222 534-845 242-463 (788)
14 PLN03210 Resistant to P. syrin 99.9 1.7E-20 3.6E-25 236.8 26.3 127 559-691 778-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 3.6E-21 7.8E-26 224.1 16.6 187 559-826 282-468 (788)
16 KOG4237 Extracellular matrix p 99.8 4.5E-22 9.7E-27 202.7 0.4 274 115-452 69-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.8E-19 3.9E-24 211.8 12.1 228 533-841 198-429 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.7E-19 1.9E-23 206.0 10.9 266 463-842 178-447 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4E-19 8.8E-24 195.3 -0.4 213 579-839 77-319 (319)
20 KOG0617 Ras suppressor protein 99.7 4.1E-19 9E-24 160.3 -5.0 183 605-845 31-217 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 4.8E-18 1E-22 186.8 0.9 235 559-842 23-293 (319)
22 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.4E-23 157.6 -6.0 185 582-824 32-220 (264)
23 PLN03150 hypothetical protein; 99.6 1.2E-14 2.6E-19 171.2 12.0 116 757-872 420-538 (623)
24 PLN03150 hypothetical protein; 99.5 1.9E-13 4E-18 161.1 12.9 150 35-198 368-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 1.9E-14 4.1E-19 154.1 -3.5 113 587-706 79-191 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 4.4E-14 9.5E-19 151.4 -5.1 194 559-814 75-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 8.2E-12 1.8E-16 141.2 7.3 105 582-691 115-220 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.2E-16 140.4 7.2 200 586-846 96-296 (394)
29 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.6E-16 128.1 1.0 166 159-327 118-285 (505)
30 KOG1909 Ran GTPase-activating 99.0 1.2E-11 2.6E-16 125.8 -3.2 68 106-174 23-104 (382)
31 KOG1909 Ran GTPase-activating 99.0 1.8E-11 3.9E-16 124.6 -2.3 135 559-693 157-311 (382)
32 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.8E-15 115.2 1.6 82 758-842 332-414 (490)
33 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 122.4 0.7 185 136-326 119-314 (505)
34 PF14580 LRR_9: Leucine-rich r 98.9 8.6E-10 1.9E-14 106.1 5.5 58 758-816 67-126 (175)
35 PF14580 LRR_9: Leucine-rich r 98.9 2.6E-10 5.6E-15 109.7 1.7 130 110-247 16-147 (175)
36 KOG1259 Nischarin, modulator o 98.9 4.1E-10 9E-15 111.6 0.9 135 285-429 279-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-09 2.9E-14 131.0 3.8 109 109-220 567-675 (889)
38 KOG0531 Protein phosphatase 1, 98.8 9.5E-10 2.1E-14 124.4 -0.6 85 757-844 234-322 (414)
39 PF13855 LRR_8: Leucine rich r 98.7 6.7E-09 1.5E-13 82.0 2.9 60 780-839 2-61 (61)
40 KOG0531 Protein phosphatase 1, 98.7 1.7E-09 3.6E-14 122.4 -1.8 217 559-841 72-291 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 2.2E-08 4.7E-13 79.1 4.4 59 584-642 2-60 (61)
42 PF08263 LRRNT_2: Leucine rich 98.7 2.7E-08 5.9E-13 71.5 4.3 40 38-79 2-43 (43)
43 KOG4658 Apoptotic ATPase [Sign 98.6 3.5E-08 7.6E-13 119.0 4.3 106 114-224 546-653 (889)
44 KOG1859 Leucine-rich repeat pr 98.5 2.8E-09 6E-14 118.0 -6.8 180 600-842 102-294 (1096)
45 KOG4579 Leucine-rich repeat (L 98.5 5.5E-09 1.2E-13 92.0 -3.9 87 758-847 80-166 (177)
46 KOG2120 SCF ubiquitin ligase, 98.4 8.6E-09 1.9E-13 102.6 -6.4 182 114-324 186-374 (419)
47 KOG2982 Uncharacterized conser 98.3 1.2E-07 2.7E-12 94.5 0.1 225 154-429 37-263 (418)
48 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 6.9E-13 109.8 -6.4 127 291-428 165-292 (1096)
49 KOG2982 Uncharacterized conser 98.2 2.9E-07 6.3E-12 91.9 0.2 89 110-198 68-157 (418)
50 KOG2120 SCF ubiquitin ligase, 98.1 9.3E-08 2E-12 95.4 -4.8 228 116-356 139-376 (419)
51 KOG4579 Leucine-rich repeat (L 98.0 3.7E-07 8E-12 80.7 -2.6 82 585-669 55-136 (177)
52 KOG4341 F-box protein containi 98.0 2.7E-07 5.8E-12 96.7 -4.8 302 114-421 139-458 (483)
53 COG5238 RNA1 Ran GTPase-activa 97.9 1.3E-06 2.9E-11 86.1 -1.2 89 605-693 212-316 (388)
54 PRK15386 type III secretion pr 97.8 5.1E-05 1.1E-09 82.3 8.7 77 603-692 48-124 (426)
55 COG5238 RNA1 Ran GTPase-activa 97.8 2.3E-05 5.1E-10 77.6 5.4 117 288-428 155-285 (388)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.9E-10 57.6 2.5 36 780-816 2-37 (44)
57 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.6E-10 55.2 3.6 37 290-326 1-37 (44)
58 KOG4341 F-box protein containi 97.7 3.8E-06 8.2E-11 88.3 -2.8 88 162-250 138-226 (483)
59 KOG1644 U2-associated snRNP A' 97.5 0.00021 4.6E-09 68.2 6.6 106 290-402 42-152 (233)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.6E-05 7.8E-10 90.9 1.0 146 113-262 122-272 (699)
61 PRK15386 type III secretion pr 97.5 0.00048 1E-08 74.9 9.5 31 584-617 157-187 (426)
62 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.4E-10 91.1 0.8 137 138-282 122-266 (699)
63 KOG2739 Leucine-rich acidic nu 97.4 9E-05 2E-09 74.0 3.3 115 103-220 33-150 (260)
64 KOG1644 U2-associated snRNP A' 97.3 0.00023 4.9E-09 68.0 4.2 106 114-222 43-149 (233)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00018 3.9E-09 71.9 1.2 115 130-247 35-150 (260)
66 PF13306 LRR_5: Leucine rich r 97.1 0.0014 3E-08 60.8 7.1 123 577-706 6-128 (129)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0043 9.3E-08 57.5 7.5 98 600-702 5-102 (129)
68 KOG2123 Uncharacterized conser 96.3 0.00023 4.9E-09 71.1 -4.8 84 344-430 20-103 (388)
69 KOG2123 Uncharacterized conser 96.1 0.00026 5.7E-09 70.7 -5.2 103 112-219 18-123 (388)
70 KOG1947 Leucine rich repeat pr 95.7 0.0012 2.7E-08 76.9 -3.1 35 368-402 403-439 (482)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0079 1.7E-07 35.9 0.7 11 782-792 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0069 1.5E-07 36.1 0.4 21 804-825 1-21 (22)
73 KOG1947 Leucine rich repeat pr 94.7 0.01 2.2E-07 69.2 0.6 58 269-326 246-308 (482)
74 KOG4308 LRR-containing protein 93.3 0.00077 1.7E-08 76.4 -11.8 84 584-668 88-184 (478)
75 KOG0473 Leucine-rich repeat pr 92.1 0.0067 1.4E-07 59.3 -5.5 81 757-840 44-124 (326)
76 KOG4308 LRR-containing protein 91.6 0.0012 2.6E-08 74.8 -13.1 90 605-694 202-304 (478)
77 PF13504 LRR_7: Leucine rich r 91.0 0.14 3E-06 28.3 1.3 13 632-644 2-14 (17)
78 PF13504 LRR_7: Leucine rich r 91.0 0.15 3.2E-06 28.2 1.4 16 291-306 2-17 (17)
79 smart00369 LRR_TYP Leucine-ric 90.2 0.27 5.9E-06 30.6 2.3 21 631-652 2-22 (26)
80 smart00370 LRR Leucine-rich re 90.2 0.27 5.9E-06 30.6 2.3 21 631-652 2-22 (26)
81 KOG0473 Leucine-rich repeat pr 88.9 0.019 4.2E-07 56.2 -5.4 82 83-174 42-123 (326)
82 smart00370 LRR Leucine-rich re 87.0 0.53 1.2E-05 29.3 2.1 16 803-818 2-17 (26)
83 smart00369 LRR_TYP Leucine-ric 87.0 0.53 1.2E-05 29.3 2.1 16 803-818 2-17 (26)
84 PF13516 LRR_6: Leucine Rich r 80.5 0.26 5.6E-06 30.0 -1.4 12 781-792 4-15 (24)
85 TIGR00864 PCC polycystin catio 76.9 2 4.3E-05 57.7 3.6 37 809-845 1-37 (2740)
86 KOG3864 Uncharacterized conser 74.8 0.5 1.1E-05 45.9 -1.9 33 115-148 103-135 (221)
87 KOG4242 Predicted myosin-I-bin 70.6 16 0.00035 40.5 7.9 18 344-361 215-232 (553)
88 KOG3864 Uncharacterized conser 69.3 1.2 2.5E-05 43.5 -0.8 79 314-398 102-184 (221)
89 smart00365 LRR_SD22 Leucine-ri 67.2 4.7 0.0001 25.1 1.8 15 802-816 1-15 (26)
90 smart00364 LRR_BAC Leucine-ric 63.3 4.9 0.00011 25.0 1.4 18 290-307 2-19 (26)
91 PF10731 Anophelin: Thrombin i 61.9 9.8 0.00021 28.5 2.9 32 1-34 1-32 (65)
92 smart00368 LRR_RI Leucine rich 55.2 9.6 0.00021 24.2 1.8 14 803-816 2-15 (28)
93 KOG4242 Predicted myosin-I-bin 51.6 46 0.001 37.1 7.2 139 560-699 215-373 (553)
94 PF12273 RCR: Chitin synthesis 47.3 11 0.00025 34.6 1.7 6 918-923 20-25 (130)
95 KOG3763 mRNA export factor TAP 44.6 11 0.00023 42.8 1.2 36 288-323 216-254 (585)
96 PF04478 Mid2: Mid2 like cell 43.5 22 0.00048 33.0 2.9 12 899-910 50-61 (154)
97 PTZ00382 Variant-specific surf 43.3 12 0.00026 32.2 1.1 22 898-919 66-87 (96)
98 PF01102 Glycophorin_A: Glycop 38.5 11 0.00023 34.0 0.0 22 899-920 65-86 (122)
99 PF15102 TMEM154: TMEM154 prot 34.0 34 0.00073 31.6 2.5 14 914-927 75-88 (146)
100 KOG3763 mRNA export factor TAP 31.6 21 0.00046 40.5 1.0 37 187-223 218-254 (585)
101 PF08693 SKG6: Transmembrane a 30.1 59 0.0013 22.7 2.5 7 901-907 15-21 (40)
102 smart00367 LRR_CC Leucine-rich 29.6 19 0.00041 22.2 0.1 10 163-172 3-12 (26)
103 PF02439 Adeno_E3_CR2: Adenovi 26.7 28 0.00061 23.8 0.6 11 901-911 6-16 (38)
104 PF12191 stn_TNFRSF12A: Tumour 26.3 37 0.00079 30.3 1.3 14 914-927 95-108 (129)
105 PF08374 Protocadherin: Protoc 25.1 58 0.0013 32.2 2.6 25 897-921 37-61 (221)
106 PF07172 GRP: Glycine rich pro 24.1 34 0.00073 29.4 0.7 9 1-9 1-9 (95)
107 PF05808 Podoplanin: Podoplani 22.5 29 0.00062 32.6 0.0 31 898-928 129-160 (162)
108 TIGR00864 PCC polycystin catio 21.1 62 0.0013 44.6 2.5 32 613-644 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-70 Score=688.30 Aligned_cols=581 Identities=37% Similarity=0.578 Sum_probs=447.3
Q ss_pred CHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCccccceeecCCCCcEEEEECCCCCCCCCCCCccccccccccccCCC
Q 046848 37 IDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLT 116 (956)
Q Consensus 37 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~ 116 (956)
.++|++||++||+++.+|.+.+.+|. ...+||.|.||+|+. .++|+.|++++ +.+.|.+++++..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~------~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG------KNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC------CCccccCChHHhCCCCCC
Confidence 46899999999999988877889997 467899999999975 57999999998 678888888889999999
Q ss_pred EEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecc
Q 046848 117 YLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLS 195 (956)
Q Consensus 117 ~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 195 (956)
+|+|++|.+++. +|..+. .+++|++|+|++|++++.+|. +.+++|++|++++|.+
T Consensus 97 ~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~--------------------- 152 (968)
T PLN00113 97 TINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML--------------------- 152 (968)
T ss_pred EEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc---------------------
Confidence 999999988875 787654 888888888888888877764 3345555555554433
Q ss_pred cccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecc
Q 046848 196 FSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGS 275 (956)
Q Consensus 196 ~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~ 275 (956)
.+.+|..+..+.+ | ++|++++
T Consensus 153 ---------------------------------------------------------~~~~p~~~~~l~~-L-~~L~L~~ 173 (968)
T PLN00113 153 ---------------------------------------------------------SGEIPNDIGSFSS-L-KVLDLGG 173 (968)
T ss_pred ---------------------------------------------------------cccCChHHhcCCC-C-CEEECcc
Confidence 2222222333333 4 5555555
Q ss_pred cccccCCCcccCCCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCc
Q 046848 276 NQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE 354 (956)
Q Consensus 276 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~ 354 (956)
|.+.+.+|..+.++++|++|++++|.+.+ +|..++++++|++|++++|.+++.+|..+..++ +|++|++++|.
T Consensus 174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~L~~n~ 247 (968)
T PLN00113 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT------SLNHLDLVYNN 247 (968)
T ss_pred CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC------CCCEEECcCce
Confidence 55555566666777777777777777766 677777777777777777777777777666665 66666666666
Q ss_pred CcccCCC-CCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccC
Q 046848 355 ITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSH 433 (956)
Q Consensus 355 l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 433 (956)
+++..|. ++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.. +.++++|++|++++|.+
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~------ 320 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNF------ 320 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCcc------
Confidence 6655443 555556666666666555555555555555555555555555544442 34444444444444333
Q ss_pred CcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcC
Q 046848 434 DWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP 513 (956)
Q Consensus 434 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 513 (956)
.+..|.++..+++|+.|++++|.+.+.+|..+.. .
T Consensus 321 ------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~-------------------------- 355 (968)
T PLN00113 321 ------------------TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-H-------------------------- 355 (968)
T ss_pred ------------------CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-C--------------------------
Confidence 3344444555555555555555544443332211 0
Q ss_pred CCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCC
Q 046848 514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN 593 (956)
Q Consensus 514 l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (956)
++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus 356 ---------------------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 356 ---------------------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred ---------------------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 56778888888888888888888888999999999
Q ss_pred cccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC
Q 046848 594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP 673 (956)
Q Consensus 594 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p 673 (956)
++.+.+|..+..+++|+.|++++|++++.+|..|..++.|+.|++++|++++.+|..+. .+++|++|++++|++.+.+|
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecC
Confidence 99989999899999999999999999999999999999999999999999988888776 68999999999999998888
Q ss_pred ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccc
Q 046848 674 LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQST 753 (956)
Q Consensus 674 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (956)
..+ ..++|+.|++++|++++.+|..+.+++.|
T Consensus 470 ~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L----------------------------------------------- 501 (968)
T PLN00113 470 DSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL----------------------------------------------- 501 (968)
T ss_pred ccc-ccccceEEECcCCccCCccChhhhhhhcc-----------------------------------------------
Confidence 765 45899999999999999999888877666
Q ss_pred ccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEE
Q 046848 754 LGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMD 833 (956)
Q Consensus 754 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 833 (956)
+.|+|++|++.+.+|..+.++++|++|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.++
T Consensus 502 ----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 502 ----MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred ----CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcceecCCCCCcCCccccccccCC-CCCCCC
Q 046848 834 LSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLP 866 (956)
Q Consensus 834 ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~ 866 (956)
+++|+++|.+|..+++.++...++.|| .+||.+
T Consensus 578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999 899864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.8e-56 Score=559.12 Aligned_cols=462 Identities=35% Similarity=0.574 Sum_probs=330.4
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCE
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW 347 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~ 347 (956)
++|++++|.+++.+|. +.+++|++|++++|.+++ +|..++++++|++|++++|.+.+.+|..+.+++ +|++
T Consensus 121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~ 192 (968)
T PLN00113 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT------SLEF 192 (968)
T ss_pred CEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc------CCCe
Confidence 4444444444433332 233444444444444443 444444444455555544444444444444444 4444
Q ss_pred EEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCc
Q 046848 348 LFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426 (956)
Q Consensus 348 L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 426 (956)
|++++|.+++.+|. ++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|.. +.++++|++|++++|.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCe
Confidence 44444444443333 444444444444444444444444445555555555555444444432 3444444444444444
Q ss_pred ccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCC
Q 046848 427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPN 506 (956)
Q Consensus 427 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 506 (956)
+ .+..|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|.
T Consensus 272 l------------------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 272 L------------------------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred e------------------------eccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCCh
Confidence 4 344455555555555555555555555554443 234555555555555544332
Q ss_pred CCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCC
Q 046848 507 LSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLA 586 (956)
Q Consensus 507 ~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 586 (956)
.+. .. ++|+.|++++|.+++.+|..++.+++|+
T Consensus 327 ~~~---------------------------------------------~l--~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 327 ALT---------------------------------------------SL--PRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred hHh---------------------------------------------cC--CCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 211 00 6788999999999999999999999999
Q ss_pred EEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCC
Q 046848 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666 (956)
Q Consensus 587 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N 666 (956)
.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N 438 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNN 438 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999887 7999999999999
Q ss_pred cccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCc
Q 046848 667 KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGS 746 (956)
Q Consensus 667 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (956)
++++.+|..+..+++|+.|++++|++.+.+|..+.. +
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-~------------------------------------------ 475 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-K------------------------------------------ 475 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecCccccc-c------------------------------------------
Confidence 999999999999999999999999999888765421 2
Q ss_pred cceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCC
Q 046848 747 QYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL 826 (956)
Q Consensus 747 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 826 (956)
.|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|+.++.+++|++|+|++|+++|.+|..+..+
T Consensus 476 ---------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 476 ---------RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ---------cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEECcCCcceecCCCC-CcCCccccccccCCCCCC
Q 046848 827 SRLSVMDLSYNNLSGKIPSG-TQLQSFSTSMYAGNELCG 864 (956)
Q Consensus 827 ~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~ 864 (956)
++|+.||+++|+++|.+|.. ..+..+....+.+|.+.|
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999975 344556666677785554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-37 Score=324.46 Aligned_cols=367 Identities=23% Similarity=0.263 Sum_probs=325.1
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEE
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L 348 (956)
+.|++++|.+...-+..|.++++|+++++..|.++.||.......+|+.|+|.+|.++..-.+.+..++ .|+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~------alrsl 154 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP------ALRSL 154 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh------hhhhh
Confidence 679999999999888999999999999999999999998777778899999999999998889999888 99999
Q ss_pred EccCCcCcccCC-CCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcc
Q 046848 349 FLDSNEITGSLP-NFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427 (956)
Q Consensus 349 ~Ls~n~l~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 427 (956)
||+.|.++.... .|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++..++. .|.++++|+.|+|..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH-Hhhhcchhhhhhccccce
Confidence 999999986543 377888999999999999988888999999999999999999977665 588999999999999999
Q ss_pred cccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCC
Q 046848 428 TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNL 507 (956)
Q Consensus 428 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 507 (956)
.......|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-..|+++ +..|+.|++++|.|...
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~ri---- 308 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRI---- 308 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhhee----
Confidence 9888899999999999999999999888889999999999999999998777777765 45888888888887722
Q ss_pred CCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCE
Q 046848 508 SSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAI 587 (956)
Q Consensus 508 ~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 587 (956)
....-.| +++|++|+|++|+++...+..|..+..|++
T Consensus 309 -----------h~d~Wsf--------------------------------tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 309 -----------HIDSWSF--------------------------------TQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred -----------ecchhhh--------------------------------cccceeEeccccccccCChhHHHHHHHhhh
Confidence 2211111 178999999999999888899999999999
Q ss_pred EEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCc---cccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848 588 LNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPS---FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK 664 (956)
Q Consensus 588 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 664 (956)
|+|++|.+...-...|..+++|+.|||++|.++..+.+ .|.++++|+.|++.+|++. .||...++++..|+.|||.
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCC
Confidence 99999999877777899999999999999999977654 5888999999999999999 9999999999999999999
Q ss_pred CCcccccCCccccCCCCcCEEeccCCcC
Q 046848 665 SNKFNGSIPLQLCHLANVQILDLSSNNI 692 (956)
Q Consensus 665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (956)
+|.|..+-|.+|..+ .|+.|-+..-.|
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred CCcceeecccccccc-hhhhhhhcccce
Confidence 999998889999988 899888765433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-36 Score=319.46 Aligned_cols=398 Identities=22% Similarity=0.227 Sum_probs=293.8
Q ss_pred CcEEECCCCcCcccc-cccc-CC-CCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCC-C
Q 046848 292 LNTLFLASNQFREIP-KSLG-NM-CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFS-S 367 (956)
Q Consensus 292 L~~L~Ls~n~l~~ip-~~l~-~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~-~ 367 (956)
-..|+.+++.+..+. ..+. -+ +.-+.|++++|++....+..|.+++ +|+.+++.+|.++ .+|.++... +
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~------nLq~v~l~~N~Lt-~IP~f~~~sgh 126 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP------NLQEVNLNKNELT-RIPRFGHESGH 126 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC------cceeeeeccchhh-hcccccccccc
Confidence 345566666665531 1111 11 2456799999999988888899988 9999999999888 455555544 5
Q ss_pred CCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcC
Q 046848 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLG 447 (956)
Q Consensus 368 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~ 447 (956)
|+.|+|.+|.|+..-...+..++.|+.|||+.|.|+.+... .|..-.++++|+|++|.|+......|..+.+|..|.|+
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 99999999999888788888899999999999998866554 35666788889999988888888888777777788888
Q ss_pred CCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeee
Q 046848 448 SCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEG 527 (956)
Q Consensus 448 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g 527 (956)
.|+++...+..|.++++|+.|+|..|+|.-.- ..-+..+
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL---------------------------------------- 244 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGL---------------------------------------- 244 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCc----------------------------------------
Confidence 87777666666777777777666666654110 0000000
Q ss_pred cCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCC
Q 046848 528 PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK 607 (956)
Q Consensus 528 ~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 607 (956)
++|+.|.+..|++...-...|-.+.++++|+|+.|++...-..++.+++
T Consensus 245 -------------------------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 245 -------------------------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred -------------------------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 5677777788888777777888888899999999998877777888899
Q ss_pred CcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEec
Q 046848 608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDL 687 (956)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 687 (956)
.|+.|++++|.|..+-+++++.+++|++|||++|+++ .+++.-+..+..|++|+|++|++...-...|..+++|++|||
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 9999999999998888888888889999999999998 777766667888888888888888666667778888888888
Q ss_pred cCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCC
Q 046848 688 SSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKL 767 (956)
Q Consensus 688 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 767 (956)
++|.++..+.+.-
T Consensus 373 r~N~ls~~IEDaa------------------------------------------------------------------- 385 (873)
T KOG4194|consen 373 RSNELSWCIEDAA------------------------------------------------------------------- 385 (873)
T ss_pred cCCeEEEEEecch-------------------------------------------------------------------
Confidence 8888876554321
Q ss_pred CCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecC
Q 046848 768 GGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKI 843 (956)
Q Consensus 768 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 843 (956)
..|..++.|+.|+|.+|++..+.-.+|..+..|+.|||.+|.|-..-|.+|..+ .|+.|-++.-.+-|.|
T Consensus 386 -----~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 386 -----VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred -----hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 123445666666666666665445566667777777777777766667777777 6777777766666664
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.8e-39 Score=324.73 Aligned_cols=176 Identities=28% Similarity=0.472 Sum_probs=119.7
Q ss_pred CCCCEEEcCCCcccccCCCCcCCCC---CcCEEEccCceeeeeCCccccCCCCCcE-EecCCccccccCChhHhhcCccC
Q 046848 583 DSLAILNLANNSFFGKIPDSIGFLK---NLQSLSLYNNRLTGELPSFFTNGSQLTL-MDLGKNGLSGEIPTWIGEGLVNL 658 (956)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~~~~l~---~L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~ip~~~~~~l~~L 658 (956)
.+.+.|++++-+++ .+|+....-. -....+++.|++. ++|..+..+..+.+ +++++|.++ .+|..+. .+++|
T Consensus 362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~kL 437 (565)
T KOG0472|consen 362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQKL 437 (565)
T ss_pred hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhhcc
Confidence 34445555555554 3333221111 2455666666665 55555555544433 344555554 6666666 47777
Q ss_pred cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738 (956)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (956)
..|+|++|.+. .+|..++.+..||+||+|+|+|. .+|.++..+..+
T Consensus 438 t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l-------------------------------- 483 (565)
T KOG0472|consen 438 TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL-------------------------------- 483 (565)
T ss_pred eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH--------------------------------
Confidence 78888777776 67777777888888888888775 667666554444
Q ss_pred eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816 (956)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 816 (956)
+.+-.++|++....|+.+.++.+|..|||.+|.+. .||+.+|++++|+.|++++|++.
T Consensus 484 -------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 -------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 44556678888667777889999999999999998 78999999999999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.5e-39 Score=323.19 Aligned_cols=453 Identities=27% Similarity=0.389 Sum_probs=273.7
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEE
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L 348 (956)
..+.+++|.+.. +.+.+.++..|.+|++++|+++.+|++++.+..++.++.++|++. .+|+.++.+. ++..+
T Consensus 48 ~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~------~l~~l 119 (565)
T KOG0472|consen 48 QKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI------SLVKL 119 (565)
T ss_pred hhhhhccCchhh-ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh------hhhhh
Confidence 344444444442 223344555555555555555555555555555555555555554 3344444444 55555
Q ss_pred EccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCccc
Q 046848 349 FLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428 (956)
Q Consensus 349 ~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 428 (956)
+.++|.+....+.++.+..|+.++..+|+++ ..|..+..+.+|..+++.+|+++...+. ... ++.|+++|...|-++
T Consensus 120 ~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~-m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 120 DCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIA-MKRLKHLDCNSNLLE 196 (565)
T ss_pred hccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHH-HHHHHhcccchhhhh
Confidence 5555555555555555555555555555555 3444555555555555555555544443 122 555555555555443
Q ss_pred ccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCC
Q 046848 429 LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLS 508 (956)
Q Consensus 429 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 508 (956)
. .+.....+.+|..|++..|++. ..| .|..|..|+++.++.|+|. .+|......++++..||+.+|+++
T Consensus 197 t-lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk------- 265 (565)
T KOG0472|consen 197 T-LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK------- 265 (565)
T ss_pred c-CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-------
Confidence 2 2333444444444455555443 233 4555666666666666654 455555555555555555555554
Q ss_pred CCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEE
Q 046848 509 SRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAIL 588 (956)
Q Consensus 509 ~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 588 (956)
..+..+|.. .+|+.||+|+|.++ ..|..++++ .|+.|
T Consensus 266 ---------------------------------------e~Pde~clL--rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 266 ---------------------------------------EVPDEICLL--RSLERLDLSNNDIS-SLPYSLGNL-HLKFL 302 (565)
T ss_pred ---------------------------------------cCchHHHHh--hhhhhhcccCCccc-cCCcccccc-eeeeh
Confidence 112222222 44555555555555 344455555 55555
Q ss_pred EcCCCccccc--------------------------------------CCC---CcCCCCCcCEEEccCceeeeeCCc-c
Q 046848 589 NLANNSFFGK--------------------------------------IPD---SIGFLKNLQSLSLYNNRLTGELPS-F 626 (956)
Q Consensus 589 ~Ls~N~l~~~--------------------------------------~p~---~~~~l~~L~~L~L~~N~l~~~~p~-~ 626 (956)
.+.+|.+..+ .+. ....+.+.+.|++++-+++ .+|+ .
T Consensus 303 ~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEV 381 (565)
T KOG0472|consen 303 ALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEV 381 (565)
T ss_pred hhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHH
Confidence 5555554210 000 1122446677777777777 4444 3
Q ss_pred ccCC--CCCcEEecCCccccccCChhHhhcCccCcE-EEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcccc
Q 046848 627 FTNG--SQLTLMDLGKNGLSGEIPTWIGEGLVNLVV-LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNF 703 (956)
Q Consensus 627 ~~~l--~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 703 (956)
|..- .-....+++.|++. ++|..+.. +..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|..++.+
T Consensus 382 fea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l 457 (565)
T KOG0472|consen 382 FEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL 457 (565)
T ss_pred HHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhh
Confidence 3221 22667788888887 78877663 554443 44455544 467777888888888888887775 566666655
Q ss_pred ccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCE
Q 046848 704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIA 783 (956)
Q Consensus 704 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 783 (956)
..| +.||+|+|+|. .+|..+..+..++.
T Consensus 458 v~L---------------------------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 458 VRL---------------------------------------------------QTLNLSFNRFR-MLPECLYELQTLET 485 (565)
T ss_pred hhh---------------------------------------------------heecccccccc-cchHHHhhHHHHHH
Confidence 444 89999999998 89999888888888
Q ss_pred EEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848 784 LNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 784 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 846 (956)
+-.++|++....|..+++|.+|..|||.+|.+. .||..+++|++|++|++++|+|. .|..
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 888889998666666999999999999999998 78899999999999999999998 5543
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=330.64 Aligned_cols=416 Identities=28% Similarity=0.384 Sum_probs=294.0
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEE
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWL 348 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L 348 (956)
+.++++.|.+. ..|....++.+|++|.|.+|.+..+|..+..+++|++|++++|++. .+|..+..+. .++.+
T Consensus 71 ~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt------~~~~~ 142 (1081)
T KOG0618|consen 71 RQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLT------AEEEL 142 (1081)
T ss_pred hhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhh------HHHHH
Confidence 44555555544 3445566777777888888777778877777888888888888775 5566666665 67777
Q ss_pred EccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCccc
Q 046848 349 FLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428 (956)
Q Consensus 349 ~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 428 (956)
..++|..... ++... .+.+++..|.+.+.++..+..+.. .|+|++|.+. .. .+.++.+|+.+....|++.
T Consensus 143 ~~s~N~~~~~---lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 143 AASNNEKIQR---LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLS 212 (1081)
T ss_pred hhhcchhhhh---hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccc
Confidence 7777722211 22222 777778888887777777776666 6888888876 22 2566777777766666554
Q ss_pred ccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCC
Q 046848 429 LEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLS 508 (956)
Q Consensus 429 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 508 (956)
... +. -+ +++.|+.++|.++...+.
T Consensus 213 ~l~--------------~~--------------g~-------------------------~l~~L~a~~n~l~~~~~~-- 237 (1081)
T KOG0618|consen 213 ELE--------------IS--------------GP-------------------------SLTALYADHNPLTTLDVH-- 237 (1081)
T ss_pred eEE--------------ec--------------Cc-------------------------chheeeeccCcceeeccc--
Confidence 211 00 12 333333333333311110
Q ss_pred CCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEE
Q 046848 509 SRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAIL 588 (956)
Q Consensus 509 ~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 588 (956)
..+.+++.+++++|++++....++.+ .+|+.++..+|+++ .+|..+...++|+.|
T Consensus 238 ----------------------p~p~nl~~~dis~n~l~~lp~wi~~~--~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 238 ----------------------PVPLNLQYLDISHNNLSNLPEWIGAC--ANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred ----------------------cccccceeeecchhhhhcchHHHHhc--ccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 01334555555555555555334444 78999999999996 778888888889999
Q ss_pred EcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCC-CcEEecCCccccccCChhHhhcCccCcEEEccCCc
Q 046848 589 NLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQ-LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNK 667 (956)
Q Consensus 589 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 667 (956)
....|.+. -+|.....++.|++|+|..|+|....+..+.-... |+.|+.+.|++. ..|..-.+..+.|+.|++.+|.
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCc
Confidence 99999988 56777777899999999999988444434444444 788888888887 6775444467789999999999
Q ss_pred ccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCcc
Q 046848 668 FNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQ 747 (956)
Q Consensus 668 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (956)
++...-..+.+.++|+.|+|++|++.......+.++..|
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L----------------------------------------- 409 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL----------------------------------------- 409 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHHhchHHh-----------------------------------------
Confidence 998877788889999999999999975544556665555
Q ss_pred ceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC-cccccCC
Q 046848 748 YEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI-PSSLSQL 826 (956)
Q Consensus 748 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l 826 (956)
+.|+||+|+++ .+|+++..+..|++|...+|++. ..| ++.++++|+.+|+|.|+|+... |.... -
T Consensus 410 ----------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~ 475 (1081)
T KOG0618|consen 410 ----------EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-S 475 (1081)
T ss_pred ----------HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-C
Confidence 88999999999 78899999999999999999998 566 8999999999999999997543 44433 3
Q ss_pred CCCCeEECcCCcc
Q 046848 827 SRLSVMDLSYNNL 839 (956)
Q Consensus 827 ~~L~~L~ls~N~l 839 (956)
++|++||+++|..
T Consensus 476 p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTR 488 (1081)
T ss_pred cccceeeccCCcc
Confidence 7899999999973
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=8.2e-35 Score=324.22 Aligned_cols=461 Identities=28% Similarity=0.337 Sum_probs=316.0
Q ss_pred CcEEECCCCcCccccc-cccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCE
Q 046848 292 LNTLFLASNQFREIPK-SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKR 370 (956)
Q Consensus 292 L~~L~Ls~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~ 370 (956)
++.|+++.|.+-..|- .....-+|+.||+++|.+. ..|..+..+. .|+.|+++.|.+.........+.+|++
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~------~L~~ln~s~n~i~~vp~s~~~~~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLS------HLRQLNLSRNYIRSVPSSCSNMRNLQY 95 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHH------HHhhcccchhhHhhCchhhhhhhcchh
Confidence 4444444444444331 1122223555555544443 2333333333 455555555544433333455555666
Q ss_pred EEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCC
Q 046848 371 LSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCK 450 (956)
Q Consensus 371 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 450 (956)
|.|.+|.+. ..|..+..+.+|++|+++.|++...+.. +..++.++.+..++|...... +-..++.+++..+.
T Consensus 96 lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~--i~~lt~~~~~~~s~N~~~~~l-----g~~~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 96 LNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLV--IEVLTAEEELAASNNEKIQRL-----GQTSIKKLDLRLNV 167 (1081)
T ss_pred heeccchhh-cCchhHHhhhcccccccchhccCCCchh--HHhhhHHHHHhhhcchhhhhh-----ccccchhhhhhhhh
Confidence 666655554 4555666666666666666666543332 455556666666666211111 11125666666666
Q ss_pred CCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCC
Q 046848 451 IGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIP 530 (956)
Q Consensus 451 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p 530 (956)
+.+.++..+..+.. .||+.+|.+. ... ...+++|+.+....|+++ .+++++
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls---------------~l~~~g-------- 218 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLS---------------ELEISG-------- 218 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccc---------------eEEecC--------
Confidence 66666666666655 6888888776 211 123456777777777665 333322
Q ss_pred CCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcC
Q 046848 531 QLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQ 610 (956)
Q Consensus 531 ~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 610 (956)
.+++.|+.++|.++........ .+|+++|+++|+++ .+|++++.+.+|+.++..+|++. .+|..+...++|+
T Consensus 219 ---~~l~~L~a~~n~l~~~~~~p~p---~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~ 290 (1081)
T KOG0618|consen 219 ---PSLTALYADHNPLTTLDVHPVP---LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLV 290 (1081)
T ss_pred ---cchheeeeccCcceeecccccc---ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHH
Confidence 4677888888888744433332 68999999999999 56799999999999999999996 7888888899999
Q ss_pred EEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCc-cCcEEEccCCcccccCCccccCCCCcCEEeccC
Q 046848 611 SLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV-NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689 (956)
Q Consensus 611 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 689 (956)
.|++..|.+. .+|......+.|++|||..|++. .+|..++.-+. +|..|+.+.|++....-..=...+.|+.|.+.+
T Consensus 291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN 368 (1081)
T ss_pred HHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence 9999999999 67777888999999999999998 88887764444 388888999998743322223457899999999
Q ss_pred CcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCC
Q 046848 690 NNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG 769 (956)
Q Consensus 690 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 769 (956)
|.++...-..+.+.. +|+.|+|++|+|..
T Consensus 369 N~Ltd~c~p~l~~~~---------------------------------------------------hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFK---------------------------------------------------HLKVLHLSYNRLNS 397 (1081)
T ss_pred Ccccccchhhhcccc---------------------------------------------------ceeeeeeccccccc
Confidence 999865444444433 34999999999996
Q ss_pred CCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee-cCCCCCc
Q 046848 770 EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG-KIPSGTQ 848 (956)
Q Consensus 770 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g-~ip~~~~ 848 (956)
.....+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+|+- .+|....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 66667899999999999999999 79999999999999999999998 566 78899999999999999964 4554433
Q ss_pred CCccccccccCC
Q 046848 849 LQSFSTSMYAGN 860 (956)
Q Consensus 849 ~~~~~~~~~~~n 860 (956)
...+....+.||
T Consensus 475 ~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 475 SPNLKYLDLSGN 486 (1081)
T ss_pred CcccceeeccCC
Confidence 355556667777
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.6e-33 Score=298.96 Aligned_cols=369 Identities=29% Similarity=0.409 Sum_probs=234.7
Q ss_pred cccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCc
Q 046848 111 ILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLI 190 (956)
Q Consensus 111 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 190 (956)
-++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++. .....+..++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI--SVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH--hhhhhhccchhhH
Confidence 35667788999999997778998889999999999888887 88888888888888888888751 1111222222222
Q ss_pred EEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccce
Q 046848 191 YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVEL 270 (956)
Q Consensus 191 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~ 270 (956)
.+++..|++.. ..
T Consensus 82 sv~~R~N~LKn----------------------------------------------------sG--------------- 94 (1255)
T KOG0444|consen 82 SVIVRDNNLKN----------------------------------------------------SG--------------- 94 (1255)
T ss_pred HHhhhcccccc----------------------------------------------------CC---------------
Confidence 22222222111 11
Q ss_pred EEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEc
Q 046848 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFL 350 (956)
Q Consensus 271 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L 350 (956)
+|..+..+..|..||||+|++.+.|..+..-+++-.|+||+|++.......+-++. .|-.|||
T Consensus 95 -----------iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt------DLLfLDL 157 (1255)
T KOG0444|consen 95 -----------IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT------DLLFLDL 157 (1255)
T ss_pred -----------CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH------hHhhhcc
Confidence 34444455555555555555555555555555555555555555544444444554 5555555
Q ss_pred cCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCcc-ccCHHhhhCCCCCCEEEcCCCcccc
Q 046848 351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRG-VISEAFLSNLSNLTILYLADNSLTL 429 (956)
Q Consensus 351 s~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 429 (956)
++|++...+|....+..|++|+|++|.+...-...+..+++|+.|.+++.+-+- -+|. .+..+.+|..+|++.|.+.
T Consensus 158 S~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 158 SNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred ccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-
Confidence 555555555555555666666666666543322333344555555555543221 1111 1334444444444444333
Q ss_pred cccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCC
Q 046848 430 EFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSS 509 (956)
Q Consensus 430 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 509 (956)
..|+.+.++++|+.|+||+|+|+.
T Consensus 236 ------------------------~vPecly~l~~LrrLNLS~N~ite-------------------------------- 259 (1255)
T KOG0444|consen 236 ------------------------IVPECLYKLRNLRRLNLSGNKITE-------------------------------- 259 (1255)
T ss_pred ------------------------cchHHHhhhhhhheeccCcCceee--------------------------------
Confidence 334444444444444444444331
Q ss_pred CCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEE
Q 046848 510 RFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILN 589 (956)
Q Consensus 510 ~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 589 (956)
+.+.. ... .+|++|++|.|+++ .+|++++.++.|+.|.
T Consensus 260 --------L~~~~-------------------------------~~W--~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 260 --------LNMTE-------------------------------GEW--ENLETLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred --------eeccH-------------------------------HHH--hhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence 11100 000 57888888888888 7899999999999999
Q ss_pred cCCCccc-ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcc
Q 046848 590 LANNSFF-GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKF 668 (956)
Q Consensus 590 Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 668 (956)
+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|++++.|..|+.|.|+.|++. ++|..+- -++.|++||+..|.-
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPN 374 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcC
Confidence 9999876 457889999999999999999988 88999999999999999999998 8999887 589999999999876
Q ss_pred c
Q 046848 669 N 669 (956)
Q Consensus 669 ~ 669 (956)
.
T Consensus 375 L 375 (1255)
T KOG0444|consen 375 L 375 (1255)
T ss_pred c
Confidence 5
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.6e-33 Score=296.35 Aligned_cols=230 Identities=26% Similarity=0.391 Sum_probs=183.8
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc-ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEe
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF-GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMD 637 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (956)
..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+-++.+|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheec
Confidence 45777777777665332334556778889999887654 568889999999999999999998 8899999999999999
Q ss_pred cCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCC-CcChhccccccCcccccCcccc
Q 046848 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG-IIPKCFNNFTAMTHEKGSNLTL 716 (956)
Q Consensus 638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~ 716 (956)
||+|+|+ ++..... ...+|++|+++.|+++ .+|+.++.++.|+.|.+.+|+++- -+|..++.+..|
T Consensus 252 LS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L---------- 318 (1255)
T KOG0444|consen 252 LSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL---------- 318 (1255)
T ss_pred cCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh----------
Confidence 9999998 7777766 3778999999999998 789999999999999999998873 367777776666
Q ss_pred cccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCC
Q 046848 717 ISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQIT 796 (956)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 796 (956)
+.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|
T Consensus 319 -----------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP 355 (1255)
T KOG0444|consen 319 -----------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP 355 (1255)
T ss_pred -----------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech
Confidence 67788888887 89999999999999999999998 789
Q ss_pred ccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC-----cceecCCC
Q 046848 797 PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN-----NLSGKIPS 845 (956)
Q Consensus 797 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N-----~l~g~ip~ 845 (956)
+.+.-++.|+.|||..|.---..|.--..-++|+.-++..- ++-|..|.
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 99999999999999999876555533322356666655532 45666554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-24 Score=220.96 Aligned_cols=423 Identities=24% Similarity=0.277 Sum_probs=230.0
Q ss_pred CCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccC-CcCcccCCC-CCCCCC
Q 046848 291 SLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDS-NEITGSLPN-FGGFSS 367 (956)
Q Consensus 291 ~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~-n~l~~~~~~-~~~l~~ 367 (956)
.-..++|..|+|+.|| .+|..+++|+.||||+|.|+...|..|..+. +|.+|-+.+ |+|+..... |+++..
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~------~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA------SLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH------hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 4566777777777776 4677777777777777777777777777776 555544444 666644333 666666
Q ss_pred CCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcC
Q 046848 368 LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLG 447 (956)
Q Consensus 368 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~ 447 (956)
|+.|.+.-|++.....+.+..+++|..|.+.+|.+..+... .+..+..++.+.+..|.+.......|.. .
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icdCnL~wla-----~---- 211 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICDCNLPWLA-----D---- 211 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccc-cccchhccchHhhhcCccccccccchhh-----h----
Confidence 66666666666666666666666666666666666543332 3555666666666655533211110000 0
Q ss_pred CCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeee
Q 046848 448 SCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEG 527 (956)
Q Consensus 448 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g 527 (956)
+....|..++.........+.+.++..+-+..|..... .+|
T Consensus 212 ---~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e--------------sl~---------------------- 252 (498)
T KOG4237|consen 212 ---DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE--------------SLP---------------------- 252 (498)
T ss_pred ---HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH--------------hHH----------------------
Confidence 00000111111111111112222222111111111000 000
Q ss_pred cCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCC
Q 046848 528 PIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLK 607 (956)
Q Consensus 528 ~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 607 (956)
.--.+.+...+.-|..|....++|+.|++++|++++.-+.+|.+...+++|.|..|++...-...|.++.
T Consensus 253 ----------s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 253 ----------SRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS 322 (498)
T ss_pred ----------HhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc
Confidence 0001122223333444544447888888888888888888888888888888888888766667788888
Q ss_pred CcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccC-ChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEe
Q 046848 608 NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEI-PTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD 686 (956)
Q Consensus 608 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (956)
.|+.|+|++|+|+...|.+|..+.+|.+|+|-.|.+--.- -.|+.+- |+.+.-.|..| .+....++.++
T Consensus 323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~--Cq~p~~~~~~~ 392 (498)
T KOG4237|consen 323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPR--CQSPGFVRQIP 392 (498)
T ss_pred cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH--------HhhCCCCCCCC--CCCCchhcccc
Confidence 8888888888888888888888888888888877764211 1233221 22222222221 12233566666
Q ss_pred ccCCcCCCC---cChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccce-eEEEc
Q 046848 687 LSSNNISGI---IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLV-KILDL 762 (956)
Q Consensus 687 Ls~N~l~~~---~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~L 762 (956)
++.+.+... .|+..+-.++= . .+ . ..+-+ +...-
T Consensus 393 ~~dv~~~~~~c~~~ee~~~~~s~------~----------cP-------~-------------------~c~c~~tVvRc 430 (498)
T KOG4237|consen 393 ISDVAFGDFRCGGPEELGCLTSS------P----------CP-------P-------------------PCTCLDTVVRC 430 (498)
T ss_pred chhccccccccCCccccCCCCCC------C----------CC-------C-------------------CcchhhhhHhh
Confidence 666655422 11111100000 0 00 0 00000 12223
Q ss_pred CCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848 763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837 (956)
Q Consensus 763 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 837 (956)
|+..+. .+|..+- ....+|+|.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus 431 Snk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 431 SNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 333333 3332221 12346777777777 56666 56666 7777777777666667777788888877776
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=3e-21 Score=243.50 Aligned_cols=346 Identities=23% Similarity=0.275 Sum_probs=181.2
Q ss_pred ccccCCCCCCEEEccCCCC------CCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeecccccc
Q 046848 307 KSLGNMCNLKSLTLSYNTL------RGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG 380 (956)
Q Consensus 307 ~~l~~l~~L~~L~Ls~n~l------~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 380 (956)
.+|.++++|+.|.+..+.. ...+|..+..++. +|+.|++.++.+...+..+ ...+|++|++.+|.+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~-----~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP-----KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCc-----ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-
Confidence 3466666777776654432 1223444444431 5666666666555333333 3456666666666554
Q ss_pred ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhh
Q 046848 381 TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLR 460 (956)
Q Consensus 381 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 460 (956)
.++..+..+++|+.|+++++...+.+|. +..+++| +.|++++|.....+|..+.
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~L------------------------e~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNL------------------------ETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcc------------------------cEEEecCCCCccccchhhh
Confidence 3444455556666666655543333332 3444444 4445555444445677777
Q ss_pred cccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceee
Q 046848 461 NQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLN 540 (956)
Q Consensus 461 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~ 540 (956)
++++|+.|++++|..-+.+|..+ .+++|+.|++++|...+.+|.. .
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~-------------------------~------- 724 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI-------------------------S------- 724 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc-------------------------c-------
Confidence 77777777777765444555433 3445666666555332222211 0
Q ss_pred CCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee
Q 046848 541 LSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT 620 (956)
Q Consensus 541 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 620 (956)
.+|++|++++|.+. .+|..+ .+++|+.|.+.++... .++..+ .
T Consensus 725 ------------------~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~----------------~ 767 (1153)
T PLN03210 725 ------------------TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE-KLWERV----------------Q 767 (1153)
T ss_pred ------------------CCcCeeecCCCccc-cccccc-cccccccccccccchh-hccccc----------------c
Confidence 34555555555554 334332 3455555555543321 111000 0
Q ss_pred eeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhc
Q 046848 621 GELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCF 700 (956)
Q Consensus 621 ~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 700 (956)
...+..+...++|+.|+|++|...+.+|.++. ++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|...
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence 01111122234566666666655555666555 46666666666654444555444 56666666666654332222211
Q ss_pred cccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcccc
Q 046848 701 NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG 780 (956)
Q Consensus 701 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 780 (956)
++++.|+|++|.++ .+|..+..+++
T Consensus 846 ------------------------------------------------------~nL~~L~Ls~n~i~-~iP~si~~l~~ 870 (1153)
T PLN03210 846 ------------------------------------------------------TNISDLNLSRTGIE-EVPWWIEKFSN 870 (1153)
T ss_pred ------------------------------------------------------cccCEeECCCCCCc-cChHHHhcCCC
Confidence 12366777777776 56667777777
Q ss_pred CCEEEcccc-cccccCCccccCCCCCCEEECCCCc
Q 046848 781 LIALNLSRN-TLTGQITPKIGQLKSLDFLDLSRNQ 814 (956)
Q Consensus 781 L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~ 814 (956)
|+.|+|++| ++. .+|..+..+++|+.|++++|.
T Consensus 871 L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 871 LSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 777777763 444 466666777777777777764
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.5e-21 Score=227.39 Aligned_cols=222 Identities=27% Similarity=0.294 Sum_probs=139.9
Q ss_pred CCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEE
Q 046848 534 LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS 613 (956)
Q Consensus 534 ~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 613 (956)
.+|+.|++++|+++.. |... ++|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. +++|+.|+
T Consensus 242 ~~Lk~LdLs~N~LtsL-P~lp----~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~Ld 308 (788)
T PRK15387 242 PELRTLEVSGNQLTSL-PVLP----PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELS 308 (788)
T ss_pred CCCcEEEecCCccCcc-cCcc----cccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeE
Confidence 3455555555555432 1111 46677777777766 33432 245667777777776 34432 35677777
Q ss_pred ccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848 614 LYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693 (956)
Q Consensus 614 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (956)
+++|++++ +|... .+|+.|++++|+++ .+|.. ..+|++|+|++|++++ +|.. .++|+.|++++|+++
T Consensus 309 LS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 309 VSDNQLAS-LPALP---SELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred CCCCcccc-CCCCc---ccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc
Confidence 77777774 34322 34667777777776 56641 2467777777777773 4432 246677777777776
Q ss_pred CCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCch
Q 046848 694 GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPE 773 (956)
Q Consensus 694 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 773 (956)
+ +|... ..|+.|+|++|+|++ +|.
T Consensus 376 ~-LP~l~------------------------------------------------------~~L~~LdLs~N~Lt~-LP~ 399 (788)
T PRK15387 376 S-LPALP------------------------------------------------------SGLKELIVSGNRLTS-LPV 399 (788)
T ss_pred c-Ccccc------------------------------------------------------cccceEEecCCcccC-CCC
Confidence 3 33211 123678888888874 554
Q ss_pred hhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 774 EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 774 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
. .++|+.|++++|+|++ +|... .+|+.|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus 400 l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 400 L---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred c---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 3 2567888888888874 66543 45677888888887 6788888888888888888888887765
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.7e-20 Score=236.81 Aligned_cols=127 Identities=23% Similarity=0.379 Sum_probs=106.6
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|+.|+|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 678999999998888899999999999999999987666788766 6899999999998765566653 367899999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNN 691 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (956)
++|.++ .+|.++. .+++|++|++++|+-...+|..+..+++|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999998 8999887 69999999999865555688888889999999999885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.6e-21 Score=224.13 Aligned_cols=187 Identities=27% Similarity=0.358 Sum_probs=137.4
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|+|
T Consensus 282 ~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdL 349 (788)
T PRK15387 282 SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSV 349 (788)
T ss_pred hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEec
Confidence 46777888888877 34542 3578888888888874 4442 2457788888888874 5532 247888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|+++ .+|.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|+|++ +|... +
T Consensus 350 S~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s-------------- 402 (788)
T PRK15387 350 SDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---S-------------- 402 (788)
T ss_pred CCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---c--------------
Confidence 888888 67752 4578888888888884 6643 3578899999998874 34221 1
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
.|+.|++++|+|++ +|... .+|+.|+|++|+|+ .+|..
T Consensus 403 -------------------------------------~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~s 440 (788)
T PRK15387 403 -------------------------------------ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPES 440 (788)
T ss_pred -------------------------------------CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChH
Confidence 23788999999984 66543 46788999999998 78999
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCC
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQL 826 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 826 (956)
++++++|+.|+|++|++++.+|..+..+
T Consensus 441 l~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 441 LIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred HhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 9999999999999999999888877443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=4.5e-22 Score=202.66 Aligned_cols=274 Identities=25% Similarity=0.263 Sum_probs=178.7
Q ss_pred CCEEeCCCCCCCCCCCC-ccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCC-CCCCCCCCccccCCCCCCcEE
Q 046848 115 LTYLDLSGNNFSGSSIP-EFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGF-NSLISGENLEWLSHLSSLIYL 192 (956)
Q Consensus 115 L~~L~Ls~n~~~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~-n~~~~~~~~~~l~~l~~L~~L 192 (956)
-..++|..|.|+. +| ..|+.+++||.||||+|+|+.+-|.+|.+|..|..|-+-+ |+| +...-..|+++..|+.|
T Consensus 69 tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHhhhHHHHHHH
Confidence 3567777888873 44 4677888888888888888877777777777766554444 544 22222223333333333
Q ss_pred ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEE
Q 046848 193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELIN 272 (956)
Q Consensus 193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~ 272 (956)
.+.- |++.-.....+..+.. + ..|.
T Consensus 146 llNa-----------------------------------------------------n~i~Cir~~al~dL~~-l-~lLs 170 (498)
T KOG4237|consen 146 LLNA-----------------------------------------------------NHINCIRQDALRDLPS-L-SLLS 170 (498)
T ss_pred hcCh-----------------------------------------------------hhhcchhHHHHHHhhh-c-chhc
Confidence 3333 3333333334444444 4 5666
Q ss_pred ecccccccCCCcccCCCCCCcEEECCCCcCcc-------------ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCC
Q 046848 273 LGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-------------IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDG 339 (956)
Q Consensus 273 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 339 (956)
+..|.+.......|..+..++.+++..|.+.. .|..++...-..-..+.+.++....+.-+....
T Consensus 171 lyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~-- 248 (498)
T KOG4237|consen 171 LYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL-- 248 (498)
T ss_pred ccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH--
Confidence 66666665444577788888888888776322 223334444444444555555444433332210
Q ss_pred CccCCCCEEEccCCcCcccCCC--CCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCC
Q 046848 340 CTKTSLAWLFLDSNEITGSLPN--FGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNL 417 (956)
Q Consensus 340 ~~~~~L~~L~Ls~n~l~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 417 (956)
..+..=-.+.+...+.-|. |..+++|+.|++++|+++++-+.+|.....+++|.|..|++..+... .|.++..|
T Consensus 249 ---esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~-~f~~ls~L 324 (498)
T KOG4237|consen 249 ---ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSG-MFQGLSGL 324 (498)
T ss_pred ---HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHH-hhhccccc
Confidence 0121111223333344444 89999999999999999999999999999999999999999865554 58899999
Q ss_pred CEEEcCCCcccccccCCcCCCCCcceEEcCCCCCC
Q 046848 418 TILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIG 452 (956)
Q Consensus 418 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 452 (956)
+.|+|.+|+|+...+..|.+...|.+|++-.|.+.
T Consensus 325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999999999999999999999999887654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.8e-19 Score=211.82 Aligned_cols=228 Identities=23% Similarity=0.441 Sum_probs=148.9
Q ss_pred CCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEE
Q 046848 533 PLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSL 612 (956)
Q Consensus 533 ~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 612 (956)
+.+++.|++++|+++....... .+|+.|++++|+++ .+|..+. .+|+.|++++|++. .+|..+. ++|+.|
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEE
Confidence 3456667777776664433222 46777777777776 4555443 36777777777776 5565543 467777
Q ss_pred EccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcC
Q 046848 613 SLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI 692 (956)
Q Consensus 613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (956)
++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+
T Consensus 268 ~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L 337 (754)
T PRK15370 268 DLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENAL 337 (754)
T ss_pred ECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcc
Confidence 77777777 4565443 46777777777777 5665443 367777777777773 454432 5777777777777
Q ss_pred CCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCc
Q 046848 693 SGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVP 772 (956)
Q Consensus 693 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 772 (956)
++ +|..+. + +|+.|++++|+|+ .+|
T Consensus 338 t~-LP~~l~--~---------------------------------------------------sL~~L~Ls~N~L~-~LP 362 (754)
T PRK15370 338 TS-LPASLP--P---------------------------------------------------ELQVLDVSKNQIT-VLP 362 (754)
T ss_pred cc-CChhhc--C---------------------------------------------------cccEEECCCCCCC-cCC
Confidence 64 343321 1 2377888888887 466
Q ss_pred hhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccc----cCCCCCCeEECcCCccee
Q 046848 773 EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSL----SQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 773 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~l~~L~~L~ls~N~l~g 841 (956)
..+. +.|+.|+|++|+|+ .+|+.+. ..|+.|++++|+++ .+|..+ ..++.+..+++.+|+++.
T Consensus 363 ~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 363 ETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 6553 57888888888887 5666554 36788888888887 445443 334667788888888763
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=8.7e-19 Score=206.02 Aligned_cols=266 Identities=25% Similarity=0.425 Sum_probs=181.6
Q ss_pred cceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCC
Q 046848 463 NQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLS 542 (956)
Q Consensus 463 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~ 542 (956)
.+...|++++++++. +|..+ .+.++.|++++|+++. +|.. ...+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~Lts-LP~~------------------------l~~nL~~L~Ls 228 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI---PEQITTLILDNNELKS-LPEN------------------------LQGNIKTLYAN 228 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCCc-CChh------------------------hccCCCEEECC
Confidence 356778888888874 55443 2467888888887762 3321 12367777777
Q ss_pred CCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeee
Q 046848 543 KNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE 622 (956)
Q Consensus 543 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 622 (956)
+|+++.....+. ..|+.|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 229 ~N~LtsLP~~l~----~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~- 297 (754)
T PRK15370 229 SNQLTSIPATLP----DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT- 297 (754)
T ss_pred CCccccCChhhh----ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-
Confidence 777764432222 46888888888887 5666554 47888888888888 4676553 578888888888884
Q ss_pred CCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccc
Q 046848 623 LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNN 702 (956)
Q Consensus 623 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 702 (956)
+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+|+ .+|..+.
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 555443 46888888888888 6776543 578888898888874 666554 68889999998887 3454332
Q ss_pred cccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCC
Q 046848 703 FTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI 782 (956)
Q Consensus 703 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 782 (956)
+ .|+.|+|++|+|+ .+|..+. ..|+
T Consensus 367 -~---------------------------------------------------~L~~LdLs~N~Lt-~LP~~l~--~sL~ 391 (754)
T PRK15370 367 -P---------------------------------------------------TITTLDVSRNALT-NLPENLP--AALQ 391 (754)
T ss_pred -C---------------------------------------------------CcCEEECCCCcCC-CCCHhHH--HHHH
Confidence 1 2378888888888 5666654 3688
Q ss_pred EEEcccccccccCCccc----cCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848 783 ALNLSRNTLTGQITPKI----GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 783 ~L~Ls~N~l~~~ip~~l----~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
.|++++|+|+ .+|..+ +.++.+..|++.+|+++. ..+. .|+.+ ++.+.+.|+
T Consensus 392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~---~L~~L-l~s~~~~gp 447 (754)
T PRK15370 392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQ---NMQRL-MSSVGYQGP 447 (754)
T ss_pred HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHHH---HHHHh-hhcccccCC
Confidence 8889999887 556544 345778889999998873 3333 33344 444555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4e-19 Score=195.27 Aligned_cols=213 Identities=23% Similarity=0.266 Sum_probs=108.8
Q ss_pred ccCCCCCCEEEcCCCcccccCCCCcCCCCC---cCEEEccCceeee----eCCccccCC-CCCcEEecCCccccccC---
Q 046848 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKN---LQSLSLYNNRLTG----ELPSFFTNG-SQLTLMDLGKNGLSGEI--- 647 (956)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~i--- 647 (956)
+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 333444444444444444333333322222 5555555555441 122233344 55566666666655322
Q ss_pred -ChhHhhcCccCcEEEccCCccccc----CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccc
Q 046848 648 -PTWIGEGLVNLVVLSLKSNKFNGS----IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYT 722 (956)
Q Consensus 648 -p~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 722 (956)
+..+. .+++|++|++++|.+++. ++..+...++|+.|++++|.+++.....+...
T Consensus 157 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~------------------- 216 (319)
T cd00116 157 LAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET------------------- 216 (319)
T ss_pred HHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-------------------
Confidence 12222 344566666666666531 22334445567777777766653322221110
Q ss_pred cccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhc-----cccCCEEEcccccccc----
Q 046848 723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-----LAGLIALNLSRNTLTG---- 793 (956)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~---- 793 (956)
...++.|+.|++++|.+++.....+.. .+.|+.|++++|.+++
T Consensus 217 ----------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 217 ----------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred ----------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 011223466777777766533333322 2677777777777752
Q ss_pred cCCccccCCCCCCEEECCCCccCcC----CcccccCC-CCCCeEECcCCcc
Q 046848 794 QITPKIGQLKSLDFLDLSRNQFFGS----IPSSLSQL-SRLSVMDLSYNNL 839 (956)
Q Consensus 794 ~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l 839 (956)
.+...+..+++|+++|+++|.++.. +...+... +.|+++|+.+|++
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2344455667778888888877744 33344444 5677888877764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.1e-19 Score=160.31 Aligned_cols=183 Identities=28% Similarity=0.458 Sum_probs=138.5
Q ss_pred CCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCE
Q 046848 605 FLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQI 684 (956)
Q Consensus 605 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 684 (956)
++...+.|.|++|+++ .+|..++.+.+|+.|++++|++. ++|..+. .+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4566677777777777 55666777777777777777777 7787777 5888888888888876 67888888888888
Q ss_pred EeccCCcCCCC-cChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcC
Q 046848 685 LDLSSNNISGI-IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLS 763 (956)
Q Consensus 685 L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 763 (956)
|||++|++... .|..|-.++.| +.|+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tl---------------------------------------------------ralyl~ 135 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL---------------------------------------------------RALYLG 135 (264)
T ss_pred hhccccccccccCCcchhHHHHH---------------------------------------------------HHHHhc
Confidence 88888887643 44444433333 667888
Q ss_pred CCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCC---CCeEECcCCcce
Q 046848 764 SNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSR---LSVMDLSYNNLS 840 (956)
Q Consensus 764 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~---L~~L~ls~N~l~ 840 (956)
.|.+. .+|..++++++|+.|.+..|.+- +.|.+++.+++|+.|.+.+|+++ .+|..++++.- =+.+.+.+|+|.
T Consensus 136 dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 136 DNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred CCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 88887 78888888999999999888887 78888999999999999999988 66666766542 356677888888
Q ss_pred ecCCC
Q 046848 841 GKIPS 845 (956)
Q Consensus 841 g~ip~ 845 (956)
-+|..
T Consensus 213 ~pIae 217 (264)
T KOG0617|consen 213 NPIAE 217 (264)
T ss_pred ChHHH
Confidence 76653
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.8e-18 Score=186.76 Aligned_cols=235 Identities=25% Similarity=0.249 Sum_probs=170.9
Q ss_pred CceeEEECCCCCCCCC----CCccccCCCCCCEEEcCCCcccc------cCCCCcCCCCCcCEEEccCceeeeeCCcccc
Q 046848 559 HKLDYIDLSNNLLSGR----LPDCWSQFDSLAILNLANNSFFG------KIPDSIGFLKNLQSLSLYNNRLTGELPSFFT 628 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 628 (956)
..|+.|+++++.+++. ++..+...+++++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 5688999999888642 45566777889999999888762 2344567788999999999999876666666
Q ss_pred CCCC---CcEEecCCccccc----cCChhHhhcC-ccCcEEEccCCccccc----CCccccCCCCcCEEeccCCcCCCCc
Q 046848 629 NGSQ---LTLMDLGKNGLSG----EIPTWIGEGL-VNLVVLSLKSNKFNGS----IPLQLCHLANVQILDLSSNNISGII 696 (956)
Q Consensus 629 ~l~~---L~~L~Ls~N~l~~----~ip~~~~~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~ 696 (956)
.+.+ |+.|++++|++++ .+...+. .+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 5555 9999999999873 2233333 35 7899999999998842 3445677788999999999987532
Q ss_pred Chhcc-ccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCC----
Q 046848 697 PKCFN-NFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEV---- 771 (956)
Q Consensus 697 p~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---- 771 (956)
...+. .+. ..+.|+.|+|++|.+++..
T Consensus 182 ~~~l~~~l~------------------------------------------------~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 182 IRALAEGLK------------------------------------------------ANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred HHHHHHHHH------------------------------------------------hCCCCCEEeccCCccChHHHHHH
Confidence 11111 111 1234589999999998543
Q ss_pred chhhhccccCCEEEcccccccccCCccccC-----CCCCCEEECCCCccC----cCCcccccCCCCCCeEECcCCcceec
Q 046848 772 PEEIMDLAGLIALNLSRNTLTGQITPKIGQ-----LKSLDFLDLSRNQFF----GSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 772 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
+..+..+++|+.|++++|.+++.....+.. .+.|+.|++++|.++ ..+.+.+..++.|+++|+++|+++..
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 344567888999999999998643433332 479999999999997 23455667778899999999999754
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-18 Score=157.55 Aligned_cols=185 Identities=30% Similarity=0.507 Sum_probs=122.9
Q ss_pred CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEE
Q 046848 582 FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVL 661 (956)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 661 (956)
+...+.|.+|+|+++ .+|..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. .+|..++ .++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence 344555556666665 34445555666666666666665 55555666666666666666665 5666655 46666666
Q ss_pred EccCCcccc-cCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848 662 SLKSNKFNG-SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV 740 (956)
Q Consensus 662 ~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (956)
||.+|++.. .+|..|..++.|+.|.|+.|.+. .+|..++++++|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l---------------------------------- 152 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL---------------------------------- 152 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------------------------------
Confidence 666666543 45666666666777777777765 566666665555
Q ss_pred EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC---CCCEEECCCCccCc
Q 046848 741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK---SLDFLDLSRNQFFG 817 (956)
Q Consensus 741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~---~L~~L~Ls~N~l~~ 817 (956)
+.|.+..|.+- ..|.+++.++.|++|++.+|+++ .+|++++++. +=+.+.+.+|....
T Consensus 153 -----------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 153 -----------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred -----------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 66667777666 68899999999999999999998 7888888764 34567788888877
Q ss_pred CCccccc
Q 046848 818 SIPSSLS 824 (956)
Q Consensus 818 ~ip~~l~ 824 (956)
.|.+.|.
T Consensus 214 pIaeQf~ 220 (264)
T KOG0617|consen 214 PIAEQFL 220 (264)
T ss_pred hHHHHHH
Confidence 7766653
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=171.17 Aligned_cols=116 Identities=40% Similarity=0.688 Sum_probs=104.1
Q ss_pred eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836 (956)
Q Consensus 757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 836 (956)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCCCC--cCCccccccccCC-CCCCCCCCCCCC
Q 046848 837 NNLSGKIPSGT--QLQSFSTSMYAGN-ELCGLPLPNKCP 872 (956)
Q Consensus 837 N~l~g~ip~~~--~~~~~~~~~~~~n-~l~~~~~~~~c~ 872 (956)
|+++|.+|..- .+.......+.+| .+||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999752 1223345568899 899987656673
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.9e-13 Score=161.14 Aligned_cols=150 Identities=32% Similarity=0.499 Sum_probs=121.9
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCc----cccceeecC--CC--CcEEEEECCCCCCCCCCCCccccc
Q 046848 35 RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCC----GWRGVNCSN--RT--GHVYKLDLHILQVFPSPCLKGTIS 106 (956)
Q Consensus 35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~l~~~~~~~~~~l~g~l~ 106 (956)
.+.++|.+||+++|+++.++.. .+|. +..|| .|.||.|.. .. .+|+.|+|++ +.+.|.+|
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~------n~L~g~ip 435 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN------QGLRGFIP 435 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC------CCccccCC
Confidence 4677899999999999876542 4896 34453 799999952 22 2589999998 68899999
Q ss_pred cccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCC-
Q 046848 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSH- 185 (956)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~- 185 (956)
+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|+|++|.+ ....|..+..
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l-~g~iP~~l~~~ 513 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVPAALGGR 513 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc-cccCChHHhhc
Confidence 9999999999999999999986 999999999999999999999999999999999999999999987 4444555543
Q ss_pred CCCCcEEeccccc
Q 046848 186 LSSLIYLDLSFSN 198 (956)
Q Consensus 186 l~~L~~L~Ls~n~ 198 (956)
..++..+++.+|.
T Consensus 514 ~~~~~~l~~~~N~ 526 (623)
T PLN03150 514 LLHRASFNFTDNA 526 (623)
T ss_pred cccCceEEecCCc
Confidence 2345566666554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.9e-14 Score=154.13 Aligned_cols=113 Identities=32% Similarity=0.511 Sum_probs=52.9
Q ss_pred EEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCC
Q 046848 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN 666 (956)
Q Consensus 587 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N 666 (956)
..|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|++|||+.|+++ .+|..++ .|+ |+.|-+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeEEEecC
Confidence 3444444444 34444444444444445554444 44444445555555555555554 4444444 222 455555555
Q ss_pred cccccCCccccCCCCcCEEeccCCcCCCCcChhccccccC
Q 046848 667 KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM 706 (956)
Q Consensus 667 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 706 (956)
+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+|
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl 191 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL 191 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH
Confidence 544 44444444445555555555544 333334433333
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=4.4e-14 Score=151.37 Aligned_cols=194 Identities=29% Similarity=0.407 Sum_probs=160.8
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
..-...|++.|++. .+|..++.+..|+.+.+..|.+. .+|.+++++..|.+|||+.|+++ .+|..+..|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 34567788999988 78888888888999999999988 78889999999999999999998 7788888776 899999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|+++ .+|..++ .+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++
T Consensus 151 sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------- 212 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------- 212 (722)
T ss_pred ecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------
Confidence 999998 8999998 7889999999999987 78888999999999999999987 4555544332
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
|..||+|+|+++ .||-.|.+++.|++|-|.+|.|. ..|..
T Consensus 213 --------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 213 --------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred --------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence 368999999998 89999999999999999999998 55655
Q ss_pred cc---CCCCCCEEECCCCc
Q 046848 799 IG---QLKSLDFLDLSRNQ 814 (956)
Q Consensus 799 l~---~l~~L~~L~Ls~N~ 814 (956)
+. ...--++|+..-++
T Consensus 253 IC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 253 ICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHhccceeeeeeecchhcc
Confidence 53 34445677777774
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=8.2e-12 Score=141.19 Aligned_cols=105 Identities=39% Similarity=0.593 Sum_probs=53.9
Q ss_pred CCCCCEEEcCCCcccccCCCCcCCCC-CcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcE
Q 046848 582 FDSLAILNLANNSFFGKIPDSIGFLK-NLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV 660 (956)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 660 (956)
++.++.|++.+|.++ .+|.....++ +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|.... .++.|+.
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhhhh
Confidence 345555555555555 3333444442 5555555555555 33344555555555555555555 5554443 3555555
Q ss_pred EEccCCcccccCCccccCCCCcCEEeccCCc
Q 046848 661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNN 691 (956)
Q Consensus 661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (956)
|++++|++. .+|........|+++++++|+
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 555555555 344333333445555555553
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1e-11 Score=140.39 Aligned_cols=200 Identities=36% Similarity=0.474 Sum_probs=161.1
Q ss_pred CEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCC-CCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848 586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGS-QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK 664 (956)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 664 (956)
..+++..|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 46888888875333 34455688999999999999 6666677774 9999999999999 8877777 79999999999
Q ss_pred CCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848 665 SNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK 744 (956)
Q Consensus 665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (956)
+|++. .+|.....+++|+.|++++|+++ .+|........
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~--------------------------------------- 210 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA--------------------------------------- 210 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhh---------------------------------------
Confidence 99998 56666668899999999999998 44443322222
Q ss_pred CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCccccc
Q 046848 745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLS 824 (956)
Q Consensus 745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 824 (956)
|+++++++|.+. .++..+.++..+..+.+++|++. .++..++.+++++.|++++|.++... . ++
T Consensus 211 ------------L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~-~-~~ 274 (394)
T COG4886 211 ------------LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS-S-LG 274 (394)
T ss_pred ------------hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccccc-c-cc
Confidence 378889999654 57778889999999999999987 45788899999999999999998543 3 88
Q ss_pred CCCCCCeEECcCCcceecCCCC
Q 046848 825 QLSRLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 825 ~l~~L~~L~ls~N~l~g~ip~~ 846 (956)
.+..++.||+++|.++...|..
T Consensus 275 ~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 275 SLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccCccCEEeccCccccccchhh
Confidence 8999999999999998877654
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-11 Score=128.11 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=89.8
Q ss_pred CCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccc
Q 046848 159 GNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNS 238 (956)
Q Consensus 159 ~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 238 (956)
+++.+|+...|.++.......-.....|++++.||||.|-+............+|+|+.|+++.|.+..... ......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--SNTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc--ccchhh
Confidence 345555555555554311111134556666666666666666655555666667777777777776654333 222223
Q ss_pred cCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcccc--ccccCCCCCC
Q 046848 239 STSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP--KSLGNMCNLK 316 (956)
Q Consensus 239 ~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip--~~l~~l~~L~ 316 (956)
++.|+.|.+++|.++..--.++.....++ +.|+|..|..-........-+..|+.|||++|++-..+ ...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 36666666666666533222222222225 66666666422222223334556667777777666654 3455666666
Q ss_pred EEEccCCCCCC
Q 046848 317 SLTLSYNTLRG 327 (956)
Q Consensus 317 ~L~Ls~n~l~~ 327 (956)
.|+++.+.+..
T Consensus 275 ~Lnls~tgi~s 285 (505)
T KOG3207|consen 275 QLNLSSTGIAS 285 (505)
T ss_pred hhhccccCcch
Confidence 66666666553
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-11 Score=125.83 Aligned_cols=68 Identities=37% Similarity=0.516 Sum_probs=40.2
Q ss_pred ccccccccCCCEEeCCCCCCCCC---CCCccccCCCCCCEEecCCCCCCC----CCCc-------cCCCCCCCcEEECCC
Q 046848 106 SSSLLILQHLTYLDLSGNNFSGS---SIPEFIGSLSKLSYLGLSNTEFAG----PIPL-------QLGNLSRLQVLDIGF 171 (956)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~-------~l~~L~~L~~L~Ls~ 171 (956)
-+.+-.+..+++++||+|.+... .+...+.+.+.|+..++|+- ++| .+|. ++-++++|++||||.
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34455677778888888877532 12334556677777777764 333 3333 234455666666666
Q ss_pred CCC
Q 046848 172 NSL 174 (956)
Q Consensus 172 n~~ 174 (956)
|.+
T Consensus 102 NA~ 104 (382)
T KOG1909|consen 102 NAF 104 (382)
T ss_pred ccc
Confidence 665
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-11 Score=124.59 Aligned_cols=135 Identities=21% Similarity=0.281 Sum_probs=94.4
Q ss_pred CceeEEECCCCCCCCC----CCccccCCCCCCEEEcCCCcccc----cCCCCcCCCCCcCEEEccCceeee----eCCcc
Q 046848 559 HKLDYIDLSNNLLSGR----LPDCWSQFDSLAILNLANNSFFG----KIPDSIGFLKNLQSLSLYNNRLTG----ELPSF 626 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~ 626 (956)
++|++++..+|++... +...|...+.|+.+.++.|.|.. .+...|..+++|+.|||..|.++. .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4677777777766532 22345666778888888887751 123456778888888888888873 23345
Q ss_pred ccCCCCCcEEecCCccccccCChhH----hhcCccCcEEEccCCccccc----CCccccCCCCcCEEeccCCcCC
Q 046848 627 FTNGSQLTLMDLGKNGLSGEIPTWI----GEGLVNLVVLSLKSNKFNGS----IPLQLCHLANVQILDLSSNNIS 693 (956)
Q Consensus 627 ~~~l~~L~~L~Ls~N~l~~~ip~~~----~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 693 (956)
+..++.|+.|++++|.+...-...+ -+..++|++|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6677889999999998875433333 33567899999999998742 2334556889999999999994
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.3e-10 Score=115.19 Aligned_cols=82 Identities=32% Similarity=0.366 Sum_probs=52.8
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC-cccccCCCCCCeEECcC
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI-PSSLSQLSRLSVMDLSY 836 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~ 836 (956)
+.||||+|.++ .+-..-..+.+.+.|+|+.|.+.. -..++.+-+|..||+++|+|...- -..+++++-|+.+.+.+
T Consensus 332 ~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 332 QLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 55666666665 333333455666677777777643 445666777777777777775422 24567777788888888
Q ss_pred Ccceec
Q 046848 837 NNLSGK 842 (956)
Q Consensus 837 N~l~g~ 842 (956)
||+.+.
T Consensus 409 NPl~~~ 414 (490)
T KOG1259|consen 409 NPLAGS 414 (490)
T ss_pred CCcccc
Confidence 888765
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1e-10 Score=122.35 Aligned_cols=185 Identities=27% Similarity=0.247 Sum_probs=101.4
Q ss_pred CCCCCCEEecCCCCCCCCCC--ccCCCCCCCcEEECCCCCCCCC-CCccccCCCCCCcEEecccccCCCCchhHHhhcCC
Q 046848 136 SLSKLSYLGLSNTEFAGPIP--LQLGNLSRLQVLDIGFNSLISG-ENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKL 212 (956)
Q Consensus 136 ~l~~L~~L~Ls~n~l~~~~p--~~l~~L~~L~~L~Ls~n~~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 212 (956)
++.+|+...|.++... ..+ .....|++++.||||.|-+..- ...+....+++|+.|+++.|++....+ -.....+
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLLL 196 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhhh
Confidence 4555555555555544 222 2344555666666665543111 111223456666666666665544311 0111245
Q ss_pred CCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCC-CcccCCCCC
Q 046848 213 DSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSI-PEAFGHMPS 291 (956)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~-p~~l~~l~~ 291 (956)
+.|+.|.+++|+++-.-- ..+...+++|+.|++..|.....-......++. | ++|||++|.+-..- -...+.++.
T Consensus 197 ~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~-L-~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIILIKATSTKILQT-L-QELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccceecchhhhhhH-H-hhccccCCcccccccccccccccc
Confidence 666667777776652111 223333477777777777422211112222333 6 78888888765431 234678899
Q ss_pred CcEEECCCCcCcc--cccc-----ccCCCCCCEEEccCCCCC
Q 046848 292 LNTLFLASNQFRE--IPKS-----LGNMCNLKSLTLSYNTLR 326 (956)
Q Consensus 292 L~~L~Ls~n~l~~--ip~~-----l~~l~~L~~L~Ls~n~l~ 326 (956)
|+.|+++.+.+.+ +|+. ...+++|++|++..|++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 9999999999888 4443 345677777777777764
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=8.6e-10 Score=106.09 Aligned_cols=58 Identities=31% Similarity=0.445 Sum_probs=19.7
Q ss_pred eEEEcCCCCCCCCCchhh-hccccCCEEEccccccccc-CCccccCCCCCCEEECCCCccC
Q 046848 758 KILDLSSNKLGGEVPEEI-MDLAGLIALNLSRNTLTGQ-ITPKIGQLKSLDFLDLSRNQFF 816 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~ 816 (956)
+.|++++|+|+. +++.+ ..+++|++|+|++|+|... .-..+..+++|+.|+|.+|+++
T Consensus 67 ~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 67 KTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 566666666663 33333 3466666666666666531 1123444555566666666555
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=2.6e-10 Score=109.70 Aligned_cols=130 Identities=32% Similarity=0.329 Sum_probs=41.7
Q ss_pred ccccCCCEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcccc-CCCC
Q 046848 110 LILQHLTYLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWL-SHLS 187 (956)
Q Consensus 110 ~~l~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l-~~l~ 187 (956)
.+...+++|+|++|.|+. + +.++ .+.+|+.|+|++|.++ .++ .+..+++|++|++++|++... .+.+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i--~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI--SEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---CHHHHHH-T
T ss_pred cccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc--ccchHHhCC
Confidence 344456777777777763 2 2344 4667777777777776 332 466677777777777776221 1223 3467
Q ss_pred CCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEc
Q 046848 188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI 247 (956)
Q Consensus 188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 247 (956)
+|++|++++|++.+... ...++.+++|+.|++.+|.+....-....+...+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777777766544 355666677777777766665432222233334466666553
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.1e-10 Score=111.64 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=89.1
Q ss_pred ccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCC
Q 046848 285 AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGG 364 (956)
Q Consensus 285 ~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 364 (956)
.+.....|+++||++|.++.+.++..-.+.++.|++|+|.+... ..+..++ +|+.|||++|.++.....-..
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~------~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELP------QLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcc------cceEeecccchhHhhhhhHhh
Confidence 33445567778888888777777777777788888888877633 2255565 777777777776643333334
Q ss_pred CCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccc
Q 046848 365 FSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTL 429 (956)
Q Consensus 365 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 429 (956)
+-+.++|.|++|.+... ..++.+-+|..||+++|+|........+++++-|+.+.|.+|++.+
T Consensus 351 LGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 55677777777776532 3566667777777777777655444446677777777777776653
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=1.4e-09 Score=131.00 Aligned_cols=109 Identities=35% Similarity=0.438 Sum_probs=76.2
Q ss_pred cccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCC
Q 046848 109 LLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSS 188 (956)
Q Consensus 109 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 188 (956)
|..++.|++|||++|.--+ .+|..++.|-+||||+|+++.+. .+|..+++|..|.+|++..+... ...+.....+++
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccc-ccccchhhhccc
Confidence 6678888888888864433 58888888888888888888888 88888888888888888877531 122344455888
Q ss_pred CcEEecccccCCCCchhHHhhcCCCCCCEEEe
Q 046848 189 LIYLDLSFSNLSKFSNWMQVLSKLDSLKALYL 220 (956)
Q Consensus 189 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l 220 (956)
||+|.+..............+.++..|+.+..
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 88888876654433333444555555555544
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=9.5e-10 Score=124.38 Aligned_cols=85 Identities=26% Similarity=0.299 Sum_probs=56.3
Q ss_pred eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC---Cccc-ccCCCCCCeE
Q 046848 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS---IPSS-LSQLSRLSVM 832 (956)
Q Consensus 757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L 832 (956)
|+.+++++|++. .++..+..+..+..|++++|++.. -..+.....+..+..+.|.+... .... ......+...
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 467788888877 444566677778888888888764 33455666777777777776521 1121 4456667777
Q ss_pred ECcCCcceecCC
Q 046848 833 DLSYNNLSGKIP 844 (956)
Q Consensus 833 ~ls~N~l~g~ip 844 (956)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888887776554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=6.7e-09 Score=81.98 Aligned_cols=60 Identities=40% Similarity=0.511 Sum_probs=32.2
Q ss_pred cCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcc
Q 046848 780 GLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNL 839 (956)
Q Consensus 780 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 839 (956)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 445555555555544444555555555555555555555555555555555555555543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.7e-09 Score=122.42 Aligned_cols=217 Identities=29% Similarity=0.315 Sum_probs=114.9
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
..++.+++..|.+.. +-..+..+++|..|++.+|+|... ...+..+++|++|++++|.|+...+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 344555555555542 223345555566666666655532 2224445555666666665553322 344444555555
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
++|.++ .++..- .+..|+.+++++|++...-+ . ...+.+++.+++.+|.+...... ..
T Consensus 148 ~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~--~~--------------- 206 (414)
T KOG0531|consen 148 SGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL--DL--------------- 206 (414)
T ss_pred ccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--HH---------------
Confidence 555555 333211 24555555555555553222 1 34445555555555555421110 00
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccc--cCCEEEcccccccccC
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLA--GLIALNLSRNTLTGQI 795 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~i 795 (956)
+..+..+++..|.++..-+ +..+. .|+.+++++|.+. .+
T Consensus 207 ------------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~ 247 (414)
T KOG0531|consen 207 ------------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RS 247 (414)
T ss_pred ------------------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cc
Confidence 0112344677777763322 12222 3788888888887 44
Q ss_pred CccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848 796 TPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 796 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 841 (956)
+..+..+..+..||+++|++... ..+.....+..+....|++..
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence 46677788888888888888643 334555666777777777653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=2.2e-08 Score=79.06 Aligned_cols=59 Identities=41% Similarity=0.540 Sum_probs=33.7
Q ss_pred CCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcc
Q 046848 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNG 642 (956)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 642 (956)
+|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555566666666665555555555555555555555554
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.66 E-value=2.7e-08 Score=71.52 Aligned_cols=40 Identities=53% Similarity=1.069 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHccCC-CCCCCCCCCCCCCC-CCCCccccceeec
Q 046848 38 DEEREALLAFKQGLV-DESGILSSWGREDE-KRDCCGWRGVNCS 79 (956)
Q Consensus 38 ~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~ 79 (956)
++|++||++||+++. +|.+.+.+|.. . ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 689999999999998 56788999984 2 2799999999995
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=3.5e-08 Score=119.03 Aligned_cols=106 Identities=29% Similarity=0.344 Sum_probs=62.7
Q ss_pred CCCEEeCCCCC--CCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848 114 HLTYLDLSGNN--FSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIY 191 (956)
Q Consensus 114 ~L~~L~Ls~n~--~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 191 (956)
.|+.|=+.+|. +... -+++|..++.|++|||++|.=-+.+|..+++|-+||+|++++..+ ...|..++++++|.+
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhhe
Confidence 46666666654 3311 223456677777777776655556777777777777777777665 355666666777777
Q ss_pred EecccccCCCCchhHHhhcCCCCCCEEEecCCC
Q 046848 192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCD 224 (956)
Q Consensus 192 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~ 224 (956)
|++..+.-... .+.....+.+|++|.+....
T Consensus 623 Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLES--IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ecccccccccc--ccchhhhcccccEEEeeccc
Confidence 77665543222 13444456666666665543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=2.8e-09 Score=117.98 Aligned_cols=180 Identities=32% Similarity=0.278 Sum_probs=118.4
Q ss_pred CCCcCCCCCcCEEEccCceeeeeCCccccCC-CCCcEEecCCcccc----------ccCChhHhhcCccCcEEEccCCcc
Q 046848 600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNG-SQLTLMDLGKNGLS----------GEIPTWIGEGLVNLVVLSLKSNKF 668 (956)
Q Consensus 600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~----------~~ip~~~~~~l~~L~~L~L~~N~l 668 (956)
|-.+..+.+|++|.+.++.+.. . .++..+ ..|+.|- -+|.+. |.+..... ...|.+.+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 5566778899999999998873 1 111111 1233332 222221 12221111 23577788888888
Q ss_pred cccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccc
Q 046848 669 NGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQY 748 (956)
Q Consensus 669 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (956)
. ....++.-++.|+.|||++|+++..- .+..
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~---------------------------------------------- 207 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRR---------------------------------------------- 207 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh----------------------------------------------
Confidence 7 55567777888899999999887331 2222
Q ss_pred eecccccceeEEEcCCCCCCCCCch-hhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc-ccccCC
Q 046848 749 EYQSTLGLVKILDLSSNKLGGEVPE-EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP-SSLSQL 826 (956)
Q Consensus 749 ~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l 826 (956)
++.|+.|||++|.+. .+|. ....+. |+.|+|++|.++. -..+.+|.+|+.||+++|-|.+.-. .-+..|
T Consensus 208 -----l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 208 -----LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred -----cccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence 234488999999988 4443 223344 8999999999874 4567889999999999998876322 335667
Q ss_pred CCCCeEECcCCcceec
Q 046848 827 SRLSVMDLSYNNLSGK 842 (956)
Q Consensus 827 ~~L~~L~ls~N~l~g~ 842 (956)
..|..|+|.+||+.|.
T Consensus 279 s~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 279 SSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHHHHhhcCCccccC
Confidence 7888999999999875
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.49 E-value=5.5e-09 Score=91.99 Aligned_cols=87 Identities=29% Similarity=0.352 Sum_probs=62.7
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 837 (956)
+.|+|++|.|+ .+|.++..++.|+.||++.|.+. ..|..+..+.++-+||..+|.+. .||-.+-.-+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 67788888887 67777888888888888888887 56777777888888888888776 55544433333444566778
Q ss_pred cceecCCCCC
Q 046848 838 NLSGKIPSGT 847 (956)
Q Consensus 838 ~l~g~ip~~~ 847 (956)
+|.+..|...
T Consensus 157 pl~~~~~~kl 166 (177)
T KOG4579|consen 157 PLGDETKKKL 166 (177)
T ss_pred cccccCcccc
Confidence 8887777643
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.6e-09 Score=102.59 Aligned_cols=182 Identities=25% Similarity=0.220 Sum_probs=95.8
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcc-ccCCCCCCcEE
Q 046848 114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLE-WLSHLSSLIYL 192 (956)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L 192 (956)
+|++||||...++...+-..+..|.+|+.|.|.++++.+.+-..+.+-.+|+.|+++.+.-.+..... .+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777777664434445667777777777777777777777777777777777776532222111 23555555555
Q ss_pred ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCc--CCCCcchhhHhhcccccce
Q 046848 193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN--LTDSIYPWLFNVSSNLVEL 270 (956)
Q Consensus 193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~~~~L~~~ 270 (956)
+++.|.+.. +.- ...+..-..+|..|+++|.. +...-...+..-..++ .+
T Consensus 266 NlsWc~l~~--------------------------~~V-tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l-~~ 317 (419)
T KOG2120|consen 266 NLSWCFLFT--------------------------EKV-TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL-VH 317 (419)
T ss_pred CchHhhccc--------------------------hhh-hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce-ee
Confidence 555554433 211 01111222444444444431 1111111122222224 55
Q ss_pred EEecccc-cccCCCcccCCCCCCcEEECCCCcCcccc---ccccCCCCCCEEEccCCC
Q 046848 271 INLGSNQ-LQGSIPEAFGHMPSLNTLFLASNQFREIP---KSLGNMCNLKSLTLSYNT 324 (956)
Q Consensus 271 L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip---~~l~~l~~L~~L~Ls~n~ 324 (956)
|||+.|. ++...-..|-+++.|++|.++.|..- +| -.+...+.|.+||..++-
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence 5555543 22222234556677777777776532 12 235667778888877654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.2e-07 Score=94.53 Aligned_cols=225 Identities=22% Similarity=0.296 Sum_probs=125.8
Q ss_pred CCccCCCCCCCcEEECCCCCCCCCCCcccc-CCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCc
Q 046848 154 IPLQLGNLSRLQVLDIGFNSLISGENLEWL-SHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSS 232 (956)
Q Consensus 154 ~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 232 (956)
.+-.+..+..++.|-+.++.+-..+....+ ..++.++++||.+|.+++...+...+.++|.|+.|+++.|.+...+...
T Consensus 37 s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l 116 (418)
T KOG2982|consen 37 SYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL 116 (418)
T ss_pred ceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC
Confidence 333344444566666666666444444444 3477889999999999998777778888999999999888887665421
Q ss_pred cccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCC
Q 046848 233 DLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNM 312 (956)
Q Consensus 233 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l 312 (956)
. .- ..+|++|-|.+..+.- ......+..+|.++.|+++.|.+..
T Consensus 117 p--~p-~~nl~~lVLNgT~L~w-------------------------~~~~s~l~~lP~vtelHmS~N~~rq-------- 160 (418)
T KOG2982|consen 117 P--LP-LKNLRVLVLNGTGLSW-------------------------TQSTSSLDDLPKVTELHMSDNSLRQ-------- 160 (418)
T ss_pred c--cc-ccceEEEEEcCCCCCh-------------------------hhhhhhhhcchhhhhhhhccchhhh--------
Confidence 1 11 1444554444332210 0111234556677777777764433
Q ss_pred CCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccc-hhhcCCCC
Q 046848 313 CNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTIN-KSVGQLVK 391 (956)
Q Consensus 313 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~ 391 (956)
+++..+......+.. ..+. ..+.+..+.++-|++. .-++++..+-+..|.+...-. .....++.
T Consensus 161 -----~n~Dd~c~e~~s~~v-~tlh---~~~c~~~~w~~~~~l~------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 161 -----LNLDDNCIEDWSTEV-LTLH---QLPCLEQLWLNKNKLS------RIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred -----hccccccccccchhh-hhhh---cCCcHHHHHHHHHhHH------hhcccchheeeecCcccchhhcccCCCCCc
Confidence 222222222111110 0000 0001222222222222 235677777777776653322 34556677
Q ss_pred CCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccc
Q 046848 392 LESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTL 429 (956)
Q Consensus 392 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 429 (956)
+.-|+|+.|+|.....-..+..++.|..|.++++++..
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77888888887766555557777888888888777654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=3.2e-08 Score=109.82 Aligned_cols=127 Identities=28% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCC
Q 046848 291 SLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLK 369 (956)
Q Consensus 291 ~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~ 369 (956)
.|...+.+.|.+..+..++.-++.|+.|+|++|+++... .+..++ .|++|||++|.+.....- -.++. |+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~------~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLP------KLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcc------cccccccccchhccccccchhhhh-he
Confidence 344555555555555555555566666666666655322 444444 566666666665532211 12222 66
Q ss_pred EEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCccc
Q 046848 370 RLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLT 428 (956)
Q Consensus 370 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 428 (956)
.|.+++|.++.. ..+.++.+|+.||+++|-+.+...-.++..+..|+.|+|.+|++-
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666666666533 345566666677777776665554445566666666777776653
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=2.9e-07 Score=91.94 Aligned_cols=89 Identities=25% Similarity=0.229 Sum_probs=53.0
Q ss_pred ccccCCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCC
Q 046848 110 LILQHLTYLDLSGNNFSGS-SIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSS 188 (956)
Q Consensus 110 ~~l~~L~~L~Ls~n~~~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 188 (956)
...++++.|||.+|.++.- ++...+.++++|++|+|+.|.+...|-..-..+.+|++|-|.+..+.-...-+.+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3456777778887777632 233445677778888887777664332221345577777777666544444444555556
Q ss_pred CcEEeccccc
Q 046848 189 LIYLDLSFSN 198 (956)
Q Consensus 189 L~~L~Ls~n~ 198 (956)
+++|.+|.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6666555553
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.3e-08 Score=95.40 Aligned_cols=228 Identities=22% Similarity=0.244 Sum_probs=146.3
Q ss_pred CEEeCCCCCCCCCCCCccccCCC--CCCEEecCCCCCCCC-CCccCCCC-CCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848 116 TYLDLSGNNFSGSSIPEFIGSLS--KLSYLGLSNTEFAGP-IPLQLGNL-SRLQVLDIGFNSLISGENLEWLSHLSSLIY 191 (956)
Q Consensus 116 ~~L~Ls~n~~~~~~~p~~l~~l~--~L~~L~Ls~n~l~~~-~p~~l~~L-~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 191 (956)
+.||+.+-.+. |..++.+. ...++.+........ +.+.+.-. +.||+||||+..+........+.+|++|+.
T Consensus 139 ~~lDl~~r~i~----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIH----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccC----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 45677666554 33344332 334444443322211 12222212 358888888877643344445788899999
Q ss_pred EecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcch-hhHhhcccccce
Q 046848 192 LDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYP-WLFNVSSNLVEL 270 (956)
Q Consensus 192 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~~~~L~~~ 270 (956)
|.+.++++.+ .+...+++-.+|+.|+++.|.--..... ..+...++.|+.|+++++.+..++-. .+......+ ..
T Consensus 215 lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~-~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l-~~ 290 (419)
T KOG2120|consen 215 LSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENAL-QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL-TQ 290 (419)
T ss_pred ccccccccCc--HHHHHHhccccceeeccccccccchhHH-HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh-hh
Confidence 9999988887 5677888889999999988753222221 33455569999999999987654432 233444446 77
Q ss_pred EEecccccc---cCCCcccCCCCCCcEEECCCCc-Ccc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCC
Q 046848 271 INLGSNQLQ---GSIPEAFGHMPSLNTLFLASNQ-FRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL 345 (956)
Q Consensus 271 L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~-l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L 345 (956)
|+++++.-. ..+..--..+++|.+|||++|. ++. .-..|..++.|++|.++.|. +.+|+.+-.+. ..++|
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~---s~psl 365 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELN---SKPSL 365 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeec---cCcce
Confidence 888876422 1222233578999999999985 343 44567889999999999998 45677665443 23399
Q ss_pred CEEEccCCcCc
Q 046848 346 AWLFLDSNEIT 356 (956)
Q Consensus 346 ~~L~Ls~n~l~ 356 (956)
.+|+..++--.
T Consensus 366 ~yLdv~g~vsd 376 (419)
T KOG2120|consen 366 VYLDVFGCVSD 376 (419)
T ss_pred EEEEeccccCc
Confidence 99999887443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=3.7e-07 Score=80.70 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848 585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK 664 (956)
Q Consensus 585 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 664 (956)
|+..+|++|.+....+..-..++.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|.-++. +.+|-.|+..
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhcCC
Confidence 334444454444222222222334445555555554 34444555555555555555554 44444442 4455555555
Q ss_pred CCccc
Q 046848 665 SNKFN 669 (956)
Q Consensus 665 ~N~l~ 669 (956)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55443
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.00 E-value=2.7e-07 Score=96.72 Aligned_cols=302 Identities=20% Similarity=0.152 Sum_probs=140.4
Q ss_pred CCCEEeCCCCCCCCC-CCCccccCCCCCCEEecCCCC-CCCCCCccC-CCCCCCcEEECCCCCCCCCCCccc-cCCCCCC
Q 046848 114 HLTYLDLSGNNFSGS-SIPEFIGSLSKLSYLGLSNTE-FAGPIPLQL-GNLSRLQVLDIGFNSLISGENLEW-LSHLSSL 189 (956)
Q Consensus 114 ~L~~L~Ls~n~~~~~-~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~L~~L~~L~Ls~n~~~~~~~~~~-l~~l~~L 189 (956)
.|+.|.+.++.-.+. ++-.+...++++++|++.++. ++...-..+ ..+++|++|++..|...+...... ...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666543221 122334456666666666654 221111112 245666666666654333333332 2456666
Q ss_pred cEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCC-cCCCCcchhhHhhccccc
Q 046848 190 IYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGN-NLTDSIYPWLFNVSSNLV 268 (956)
Q Consensus 190 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~L~ 268 (956)
++++++.+.--...++-....++..++.+.+.+|.-.+.-.. .........+..+++..+ .+++.--..+......|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l- 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL- 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhhhHh-
Confidence 666666554222122222333444455554444432111000 001111122333333332 22222211122222224
Q ss_pred ceEEecccccccC--CCcccCCCCCCcEEECCCCc-Ccc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccC
Q 046848 269 ELINLGSNQLQGS--IPEAFGHMPSLNTLFLASNQ-FRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKT 343 (956)
Q Consensus 269 ~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~-l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~ 343 (956)
+.++.+++...+. +..--.+..+|+.|.+++++ ++. +..-=.+.+.|+.+++..+...... .+..+..+| +
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C--~ 372 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNC--P 372 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCC--c
Confidence 5555555433211 11112456677777777765 333 2111245677777777776543221 233333221 2
Q ss_pred CCCEEEccCCcCcccC--CC----CCCCCCCCEEEeeccccc-cccchhhcCCCCCCEEECcCcc-CccccCHHhhhCCC
Q 046848 344 SLAWLFLDSNEITGSL--PN----FGGFSSLKRLSIANNRLN-GTINKSVGQLVKLESLFLHNNS-LRGVISEAFLSNLS 415 (956)
Q Consensus 344 ~L~~L~Ls~n~l~~~~--~~----~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~ 415 (956)
.|+.+.+++|...... .. -..+..|+.+.+++++.. ......+..+++|+.+++..++ ++......+...++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 6777777777554322 11 234566777778777653 2333455667788888877774 33333334556666
Q ss_pred CCCEEE
Q 046848 416 NLTILY 421 (956)
Q Consensus 416 ~L~~L~ 421 (956)
++++..
T Consensus 453 ~i~v~a 458 (483)
T KOG4341|consen 453 NIKVHA 458 (483)
T ss_pred cceehh
Confidence 666543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=1.3e-06 Score=86.14 Aligned_cols=89 Identities=25% Similarity=0.182 Sum_probs=49.5
Q ss_pred CCCCcCEEEccCceeeee----CCccccCCCCCcEEecCCccccccCChhHhh-----cCccCcEEEccCCcccccCCcc
Q 046848 605 FLKNLQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE-----GLVNLVVLSLKSNKFNGSIPLQ 675 (956)
Q Consensus 605 ~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~-----~l~~L~~L~L~~N~l~~~~p~~ 675 (956)
.+.+|+.|||..|-++-. +..++...+.|+.|.+.+|-++..-...++. -.++|..|...+|...+.+-..
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 345666666666655521 2223344455677777777666443333332 2456777777777665433211
Q ss_pred -------ccCCCCcCEEeccCCcCC
Q 046848 676 -------LCHLANVQILDLSSNNIS 693 (956)
Q Consensus 676 -------l~~l~~L~~L~Ls~N~l~ 693 (956)
-..++-|..|.+.+|+|.
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcch
Confidence 134566777777778776
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=5.1e-05 Score=82.30 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=52.3
Q ss_pred cCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCc
Q 046848 603 IGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANV 682 (956)
Q Consensus 603 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 682 (956)
+..+.+++.|++++|.++ .+|. --.+|+.|++++|.-...+|..+. ++|+.|++++|.....+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCcccccccc------ccc
Confidence 344688999999999887 5562 224699999988554447776543 478899999883323455 357
Q ss_pred CEEeccCCcC
Q 046848 683 QILDLSSNNI 692 (956)
Q Consensus 683 ~~L~Ls~N~l 692 (956)
+.|++++|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777776654
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.83 E-value=2.3e-05 Score=77.62 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=59.1
Q ss_pred CCCCCcEEECCCCcCccccc-----cccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCC
Q 046848 288 HMPSLNTLFLASNQFREIPK-----SLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNF 362 (956)
Q Consensus 288 ~l~~L~~L~Ls~n~l~~ip~-----~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~ 362 (956)
+-|.|++.....|++...|. .+..-..|+.+.+..|.+.-.-...+..+ .+
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~------------------------gl 210 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL------------------------GL 210 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH------------------------HH
Confidence 44667777777777665432 23333567777777776653211111110 02
Q ss_pred CCCCCCCEEEeecccccc----ccchhhcCCCCCCEEECcCccCccccCHHhhhC-----CCCCCEEEcCCCccc
Q 046848 363 GGFSSLKRLSIANNRLNG----TINKSVGQLVKLESLFLHNNSLRGVISEAFLSN-----LSNLTILYLADNSLT 428 (956)
Q Consensus 363 ~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-----l~~L~~L~Ls~n~l~ 428 (956)
..+.+|+.||+.+|.++- .+...+..++.|+.|.+..|-++......++.. .++|..|-..+|...
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 233455555555555542 122344555666777777776655444443332 345555555555443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.3e-05 Score=57.60 Aligned_cols=36 Identities=36% Similarity=0.587 Sum_probs=17.0
Q ss_pred cCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848 780 GLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816 (956)
Q Consensus 780 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 816 (956)
+|++|++++|+|+ .+|+.++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555554 34444555555555555555544
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4e-05 Score=55.17 Aligned_cols=37 Identities=38% Similarity=0.584 Sum_probs=27.1
Q ss_pred CCCcEEECCCCcCccccccccCCCCCCEEEccCCCCC
Q 046848 290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR 326 (956)
Q Consensus 290 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~ 326 (956)
++|++|++++|+++++|+.+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4677888888888887777778888888888888776
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.67 E-value=3.8e-06 Score=88.30 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCCcEEECCCCCCCCCCCcc-ccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccC
Q 046848 162 SRLQVLDIGFNSLISGENLE-WLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSST 240 (956)
Q Consensus 162 ~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 240 (956)
..|+.|.+.++.-....... ...+++++++|.+.++...+.......-..+++|+++++..|..-..... ..+...++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L-k~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL-KYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-HHHHHhhh
Confidence 35778888887643333332 24678888888887776433333444455677777777766432211110 22333446
Q ss_pred CccEEEcCCC
Q 046848 241 SLEVIVILGN 250 (956)
Q Consensus 241 ~L~~L~L~~n 250 (956)
+|++++++++
T Consensus 217 kL~~lNlSwc 226 (483)
T KOG4341|consen 217 KLKYLNLSWC 226 (483)
T ss_pred hHHHhhhccC
Confidence 6666666655
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00021 Score=68.22 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=77.6
Q ss_pred CCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcc--cCCCCCCCCC
Q 046848 290 PSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITG--SLPNFGGFSS 367 (956)
Q Consensus 290 ~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~l~~ 367 (956)
.+...+||++|.+..++ .|..++.|..|.|.+|+++...|..-.-++ +|..|.|.+|++.. .+..+..++.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p------~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLP------NLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhcc------ccceEEecCcchhhhhhcchhccCCc
Confidence 45677888888887763 467788888888888888877666555555 78888888888873 4445788888
Q ss_pred CCEEEeecccccccc---chhhcCCCCCCEEECcCccC
Q 046848 368 LKRLSIANNRLNGTI---NKSVGQLVKLESLFLHNNSL 402 (956)
Q Consensus 368 L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~n~l 402 (956)
|++|.+-+|.++..- ...+..+|+|+.||...-..
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 888888888876432 13456677888887765543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=3.6e-05 Score=90.93 Aligned_cols=146 Identities=23% Similarity=0.271 Sum_probs=86.6
Q ss_pred cCCCEEeCCCCCCCCCCCCcccc-CCCCCCEEecCCCCCCC-CCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCc
Q 046848 113 QHLTYLDLSGNNFSGSSIPEFIG-SLSKLSYLGLSNTEFAG-PIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLI 190 (956)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 190 (956)
.+|++||++|...-...=|..++ .||.|+.|.+++-.+.. ..-....++++|..||+|+..+ ....+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNLSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCcHHHhccccHH
Confidence 45777777775433222233333 56777777777765542 2233345677777777777765 3336677777777
Q ss_pred EEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCC---ccccccccCCccEEEcCCCcCCCCcchhhHh
Q 046848 191 YLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPS---SDLYLNSSTSLEVIVILGNNLTDSIYPWLFN 262 (956)
Q Consensus 191 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 262 (956)
.|.+.+-.+..... ...+-+|++|+.||+|.......... -.+...-+++|+.||.++..+.+.+-..+.+
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 77777666665432 34556677777777776544332200 0122333588889998888777766555444
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00048 Score=74.91 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=15.1
Q ss_pred CCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN 617 (956)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 617 (956)
+|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555555543 2233222 45666666554
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=3.4e-05 Score=91.13 Aligned_cols=137 Identities=20% Similarity=0.250 Sum_probs=89.2
Q ss_pred CCCCEEecCCCCCC-CCCCccCC-CCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCC
Q 046848 138 SKLSYLGLSNTEFA-GPIPLQLG-NLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSL 215 (956)
Q Consensus 138 ~~L~~L~Ls~n~l~-~~~p~~l~-~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 215 (956)
.+|++||+++.... ..-|..++ .||+|+.|.+++=.+..........++++|+.||+|+.+++.+ ..++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 67888888886533 23333444 5788888888876553333334457788899999998888874 667888888
Q ss_pred CEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCc--chhh----HhhcccccceEEecccccccCC
Q 046848 216 KALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSI--YPWL----FNVSSNLVELINLGSNQLQGSI 282 (956)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l----~~~~~~L~~~L~Ls~n~l~~~~ 282 (956)
+.|.+.+-.+..... ...++++ ++|++||+|.......- .... ..++. | +.||.|+..+.+.+
T Consensus 198 q~L~mrnLe~e~~~~-l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe-L-rfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQD-LIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPE-L-RFLDCSGTDINEEI 266 (699)
T ss_pred HHHhccCCCCCchhh-HHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCcc-c-cEEecCCcchhHHH
Confidence 888888776654211 1345555 88999998876544321 1111 12333 7 88888877766543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=9e-05 Score=73.96 Aligned_cols=115 Identities=23% Similarity=0.252 Sum_probs=75.1
Q ss_pred cccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC--CCCCCCCccCCCCCCCcEEECCCCCCCCCCCc
Q 046848 103 GTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT--EFAGPIPLQLGNLSRLQVLDIGFNSLISGENL 180 (956)
Q Consensus 103 g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~ 180 (956)
|.+..-.-.+..|+.|++.+..++.. ..+..+++|++|.++.| ++.+.++....++++|++|++++|++......
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 34444445566677777777666522 34556889999999999 66777777777779999999999987444444
Q ss_pred cccCCCCCCcEEecccccCCCCchhH-HhhcCCCCCCEEEe
Q 046848 181 EWLSHLSSLIYLDLSFSNLSKFSNWM-QVLSKLDSLKALYL 220 (956)
Q Consensus 181 ~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~l 220 (956)
..+..+.+|..|++..|........- ..+.-+++|+.|+-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 55667777778888877665542211 23344555555543
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00023 Score=68.02 Aligned_cols=106 Identities=26% Similarity=0.285 Sum_probs=68.9
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEe
Q 046848 114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLD 193 (956)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 193 (956)
....+||++|.+.. + ..+..++.|.+|.|.+|+|+..-|.--.-+++|+.|.|.+|.+...+....+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45678888887762 2 34667888888888888888555554455677888888888776666666677777777777
Q ss_pred cccccCCCCchh-HHhhcCCCCCCEEEecC
Q 046848 194 LSFSNLSKFSNW-MQVLSKLDSLKALYLIS 222 (956)
Q Consensus 194 Ls~n~l~~~~~~-~~~l~~l~~L~~L~l~~ 222 (956)
+-+|........ ...+-.+|+|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 777766553221 12233444444444433
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00018 Score=71.85 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=78.2
Q ss_pred CCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcc-ccCCCCCCcEEecccccCCCCchhHHh
Q 046848 130 IPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLE-WLSHLSSLIYLDLSFSNLSKFSNWMQV 208 (956)
Q Consensus 130 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 208 (956)
+......+..|+.|.+.+..++.. ..+-.|++|+.|++|.|+........ ....+++|++|++++|++..+.. ...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cch
Confidence 444455677888888888877622 34667899999999999432233333 34567999999999999887533 455
Q ss_pred hcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEc
Q 046848 209 LSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI 247 (956)
Q Consensus 209 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 247 (956)
+..+.+|..|++..|..+...-.....+..+++|.+||-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 677888888888888776633323344555566666553
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.08 E-value=0.0014 Score=60.81 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=55.3
Q ss_pred ccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCc
Q 046848 577 DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV 656 (956)
Q Consensus 577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 656 (956)
.+|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3455666666666653 344455556666666777776664 5545555666666677777754 333 45555554566
Q ss_pred cCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccC
Q 046848 657 NLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM 706 (956)
Q Consensus 657 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 706 (956)
+|+.+++..+ +...-...+.+. +|+.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777554 443334455555 777777665 4444444556555444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.77 E-value=0.0043 Score=57.45 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=57.9
Q ss_pred CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCC
Q 046848 600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679 (956)
Q Consensus 600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 679 (956)
..+|.++++|+.+.+.. .+.......|.++++|+.+++.++ +. .++...+.++++++.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence 45677888888888875 566677778888888888888875 65 77777776777888888865 4443444566678
Q ss_pred CCcCEEeccCCcCCCCcChhccc
Q 046848 680 ANVQILDLSSNNISGIIPKCFNN 702 (956)
Q Consensus 680 ~~L~~L~Ls~N~l~~~~p~~~~~ 702 (956)
++|+.+++..+ +.......|.+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT
T ss_pred ccccccccCcc-ccEEchhhhcC
Confidence 88888888665 44333344444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.00023 Score=71.10 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=58.6
Q ss_pred CCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcC
Q 046848 344 SLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA 423 (956)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 423 (956)
+.+.|+..+|.+.. +.....++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|...-.-.++.++++|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~D-Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccH-HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 55566666666552 22245667777788887877654 3466788888888888888776666677888888888888
Q ss_pred CCccccc
Q 046848 424 DNSLTLE 430 (956)
Q Consensus 424 ~n~l~~~ 430 (956)
.|+-.+.
T Consensus 97 ENPCc~~ 103 (388)
T KOG2123|consen 97 ENPCCGE 103 (388)
T ss_pred cCCcccc
Confidence 8776543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.00026 Score=70.66 Aligned_cols=103 Identities=26% Similarity=0.252 Sum_probs=63.5
Q ss_pred ccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIY 191 (956)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 191 (956)
+...+.|++-++.++++ ....+++.|++|.||-|.|+.-- .+..|++|++|.|..|.|.....+..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 55667777777777754 23456777888888888776332 35667777777777776655555566677777777
Q ss_pred EecccccCCCCch---hHHhhcCCCCCCEEE
Q 046848 192 LDLSFSNLSKFSN---WMQVLSKLDSLKALY 219 (956)
Q Consensus 192 L~Ls~n~l~~~~~---~~~~l~~l~~L~~L~ 219 (956)
|-|..|...+..+ -...+..||+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777666544311 012344455555553
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.68 E-value=0.0012 Score=76.94 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=17.0
Q ss_pred CCEEEeeccccccc-cchhhcC-CCCCCEEECcCccC
Q 046848 368 LKRLSIANNRLNGT-INKSVGQ-LVKLESLFLHNNSL 402 (956)
Q Consensus 368 L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l 402 (956)
++.|+++.+..... .-..... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 66666666554311 1111111 55566666666643
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0079 Score=35.89 Aligned_cols=11 Identities=55% Similarity=0.525 Sum_probs=4.6
Q ss_pred CEEEccccccc
Q 046848 782 IALNLSRNTLT 792 (956)
Q Consensus 782 ~~L~Ls~N~l~ 792 (956)
++|||++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0069 Score=36.14 Aligned_cols=21 Identities=57% Similarity=0.857 Sum_probs=14.1
Q ss_pred CCCEEECCCCccCcCCcccccC
Q 046848 804 SLDFLDLSRNQFFGSIPSSLSQ 825 (956)
Q Consensus 804 ~L~~L~Ls~N~l~~~ip~~l~~ 825 (956)
+|++|||++|+++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56666554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.69 E-value=0.01 Score=69.21 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=29.7
Q ss_pred ceEEecccc-cccCCCcccC-CCCCCcEEECCCCc-Ccc--ccccccCCCCCCEEEccCCCCC
Q 046848 269 ELINLGSNQ-LQGSIPEAFG-HMPSLNTLFLASNQ-FRE--IPKSLGNMCNLKSLTLSYNTLR 326 (956)
Q Consensus 269 ~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~--ip~~l~~l~~L~~L~Ls~n~l~ 326 (956)
+.++++++. ++...-..+. .+++|++|.+.++. +++ +-.....+++|++|+++++...
T Consensus 246 ~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 246 KSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 445555444 3322222222 25666666666555 444 3334455666777777766543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.33 E-value=0.00077 Score=76.40 Aligned_cols=84 Identities=26% Similarity=0.243 Sum_probs=43.4
Q ss_pred CCCEEEcCCCcccccC----CCCcCCCCCcCEEEccCceeeeeCC----ccccCC-CCCcEEecCCcccccc----CChh
Q 046848 584 SLAILNLANNSFFGKI----PDSIGFLKNLQSLSLYNNRLTGELP----SFFTNG-SQLTLMDLGKNGLSGE----IPTW 650 (956)
Q Consensus 584 ~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l-~~L~~L~Ls~N~l~~~----ip~~ 650 (956)
.+..|.|.+|.+.... ...+.....|+.|++++|.+...-- ..+... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3667777777776332 2234556667777777777662211 112222 3455566666665532 2233
Q ss_pred HhhcCccCcEEEccCCcc
Q 046848 651 IGEGLVNLVVLSLKSNKF 668 (956)
Q Consensus 651 ~~~~l~~L~~L~L~~N~l 668 (956)
+.. ...+++++++.|.+
T Consensus 168 L~~-~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEK-NEHLTELDLSLNGL 184 (478)
T ss_pred Hhc-ccchhHHHHHhccc
Confidence 332 44555555555554
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.09 E-value=0.0067 Score=59.32 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=72.0
Q ss_pred eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836 (956)
Q Consensus 757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 836 (956)
.+.||++.|++. ..-..|+.++.|..||++.|++. ..|+.++++..+..+++..|..+ ..|.++..++.+++++.-.
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 478999999987 45567788899999999999998 78999999999999999999988 6789999999999999999
Q ss_pred Ccce
Q 046848 837 NNLS 840 (956)
Q Consensus 837 N~l~ 840 (956)
|+|.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 9874
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.61 E-value=0.0012 Score=74.85 Aligned_cols=90 Identities=26% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCCCcCEEEccCceeeee----CCccccCCCC-CcEEecCCccccccCChhHhh---cC-ccCcEEEccCCcccccC---
Q 046848 605 FLKNLQSLSLYNNRLTGE----LPSFFTNGSQ-LTLMDLGKNGLSGEIPTWIGE---GL-VNLVVLSLKSNKFNGSI--- 672 (956)
Q Consensus 605 ~l~~L~~L~L~~N~l~~~----~p~~~~~l~~-L~~L~Ls~N~l~~~ip~~~~~---~l-~~L~~L~L~~N~l~~~~--- 672 (956)
...++++|.+++|.++.. +...+...+. +..|++..|++.+..-..+.. .+ ..+++++++.|.|+..-
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 345566666666665511 1122333344 555777777665332111111 12 35577777777776432
Q ss_pred -CccccCCCCcCEEeccCCcCCC
Q 046848 673 -PLQLCHLANVQILDLSSNNISG 694 (956)
Q Consensus 673 -p~~l~~l~~L~~L~Ls~N~l~~ 694 (956)
...+..++.++++.+++|.+..
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhhHHHHHhhcccCcccc
Confidence 3345566677788888887764
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.03 E-value=0.14 Score=28.30 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=4.6
Q ss_pred CCcEEecCCcccc
Q 046848 632 QLTLMDLGKNGLS 644 (956)
Q Consensus 632 ~L~~L~Ls~N~l~ 644 (956)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.96 E-value=0.15 Score=28.17 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=6.3
Q ss_pred CCcEEECCCCcCcccc
Q 046848 291 SLNTLFLASNQFREIP 306 (956)
Q Consensus 291 ~L~~L~Ls~n~l~~ip 306 (956)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.19 E-value=0.27 Score=30.61 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=14.9
Q ss_pred CCCcEEecCCccccccCChhHh
Q 046848 631 SQLTLMDLGKNGLSGEIPTWIG 652 (956)
Q Consensus 631 ~~L~~L~Ls~N~l~~~ip~~~~ 652 (956)
++|+.|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56777777777777 7777665
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.19 E-value=0.27 Score=30.61 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=14.9
Q ss_pred CCCcEEecCCccccccCChhHh
Q 046848 631 SQLTLMDLGKNGLSGEIPTWIG 652 (956)
Q Consensus 631 ~~L~~L~Ls~N~l~~~ip~~~~ 652 (956)
++|+.|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 56777777777777 7777665
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.94 E-value=0.019 Score=56.24 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=55.7
Q ss_pred CcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 046848 83 GHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLS 162 (956)
Q Consensus 83 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~ 162 (956)
.+|+.||++.. .+. .+-.-++.++.|..||++.|.+. .+|.+++.+..++++++..|..+ ..|.++++++
T Consensus 42 kr~tvld~~s~------r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 42 KRVTVLDLSSN------RLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred ceeeeehhhhh------HHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 46777777662 222 22345666777777777777776 56777777777777777777666 6777777777
Q ss_pred CCcEEECCCCCC
Q 046848 163 RLQVLDIGFNSL 174 (956)
Q Consensus 163 ~L~~L~Ls~n~~ 174 (956)
+++++++-.+.+
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 777777766654
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.02 E-value=0.53 Score=29.25 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=9.3
Q ss_pred CCCCEEECCCCccCcC
Q 046848 803 KSLDFLDLSRNQFFGS 818 (956)
Q Consensus 803 ~~L~~L~Ls~N~l~~~ 818 (956)
++|+.|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.02 E-value=0.53 Score=29.25 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=9.3
Q ss_pred CCCCEEECCCCccCcC
Q 046848 803 KSLDFLDLSRNQFFGS 818 (956)
Q Consensus 803 ~~L~~L~Ls~N~l~~~ 818 (956)
++|+.|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666533
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.47 E-value=0.26 Score=30.01 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=4.1
Q ss_pred CCEEEccccccc
Q 046848 781 LIALNLSRNTLT 792 (956)
Q Consensus 781 L~~L~Ls~N~l~ 792 (956)
|+.|+|++|+|+
T Consensus 4 L~~L~l~~n~i~ 15 (24)
T PF13516_consen 4 LETLDLSNNQIT 15 (24)
T ss_dssp -SEEE-TSSBEH
T ss_pred CCEEEccCCcCC
Confidence 344444444433
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.90 E-value=2 Score=57.69 Aligned_cols=37 Identities=27% Similarity=0.211 Sum_probs=31.8
Q ss_pred ECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 809 DLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 809 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
||++|+|+...+..|..+.+|+.|+|++|+|.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6888999877778888899999999999999998754
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.84 E-value=0.5 Score=45.90 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC
Q 046848 115 LTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT 148 (956)
Q Consensus 115 L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n 148 (956)
++.+|-++..|..+ --+-+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHH-HHHHHhccchhhhheeccc
Confidence 44455555544432 1223444455555555544
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.64 E-value=16 Score=40.48 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=8.4
Q ss_pred CCCEEEccCCcCcccCCC
Q 046848 344 SLAWLFLDSNEITGSLPN 361 (956)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~ 361 (956)
.+.+++++.|.....+|.
T Consensus 215 ~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cccccccccCCCCccchh
Confidence 344455555544444443
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.35 E-value=1.2 Score=43.50 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=36.9
Q ss_pred CCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCC--CC-CCCCCCCEEEeecc-ccccccchhhcCC
Q 046848 314 NLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLP--NF-GGFSSLKRLSIANN-RLNGTINKSVGQL 389 (956)
Q Consensus 314 ~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~--~~-~~l~~L~~L~Ls~n-~l~~~~~~~l~~l 389 (956)
.++.+|-++..+..+-.+-+..++ .++.|.+.+|.--+.-- .+ +-.++|+.|++++| +|+...-..+..+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~------~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLR------SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccc------hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 455666666655544444444444 55555555553221100 00 12345555555544 3444444445555
Q ss_pred CCCCEEECc
Q 046848 390 VKLESLFLH 398 (956)
Q Consensus 390 ~~L~~L~L~ 398 (956)
++|+.|.+.
T Consensus 176 knLr~L~l~ 184 (221)
T KOG3864|consen 176 KNLRRLHLY 184 (221)
T ss_pred hhhHHHHhc
Confidence 555555444
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.21 E-value=4.7 Score=25.13 Aligned_cols=15 Identities=47% Similarity=0.605 Sum_probs=9.9
Q ss_pred CCCCCEEECCCCccC
Q 046848 802 LKSLDFLDLSRNQFF 816 (956)
Q Consensus 802 l~~L~~L~Ls~N~l~ 816 (956)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356677777777765
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.30 E-value=4.9 Score=24.97 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=13.4
Q ss_pred CCCcEEECCCCcCccccc
Q 046848 290 PSLNTLFLASNQFREIPK 307 (956)
Q Consensus 290 ~~L~~L~Ls~n~l~~ip~ 307 (956)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367778888888877775
No 91
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=61.93 E-value=9.8 Score=28.54 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=22.3
Q ss_pred CCCeehhHHHHHHHHHHHHhcccCccccCCCCCc
Q 046848 1 MSSKWFLVLQYLALFSVILFDQLEPRAADSSNII 34 (956)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (956)
|-+|+|. ..++|+.+|. +.|.+|-.|......
T Consensus 1 MA~Kl~v-ialLC~aLva-~vQ~APQYa~GeeP~ 32 (65)
T PF10731_consen 1 MASKLIV-IALLCVALVA-IVQSAPQYAPGEEPS 32 (65)
T ss_pred CcchhhH-HHHHHHHHHH-HHhcCcccCCCCCCC
Confidence 7889987 5666665555 788888777655443
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.18 E-value=9.6 Score=24.16 Aligned_cols=14 Identities=50% Similarity=0.446 Sum_probs=8.2
Q ss_pred CCCCEEECCCCccC
Q 046848 803 KSLDFLDLSRNQFF 816 (956)
Q Consensus 803 ~~L~~L~Ls~N~l~ 816 (956)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666654
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.58 E-value=46 Score=37.14 Aligned_cols=139 Identities=19% Similarity=0.057 Sum_probs=60.0
Q ss_pred ceeEEECCCCCCCCCCCccccCC---CCCCEEEcCCCccc---ccCCCCcCCCCCcCEEEccCceee--------eeCCc
Q 046848 560 KLDYIDLSNNLLSGRLPDCWSQF---DSLAILNLANNSFF---GKIPDSIGFLKNLQSLSLYNNRLT--------GELPS 625 (956)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~--------~~~p~ 625 (956)
.+.+++++.|.....+|..+..+ ..++.++.+...+. +.-+-.++.-+.|+..+++.|..+ +.--+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 34555555555555555432221 23444454444433 112222333455666666655433 11122
Q ss_pred cccCCCCCcEEecCCccccccCChhHhhcCc-----cCcEEEccCCcccccC-CccccCCCCcCEEeccCCcCCCCcChh
Q 046848 626 FFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV-----NLVVLSLKSNKFNGSI-PLQLCHLANVQILDLSSNNISGIIPKC 699 (956)
Q Consensus 626 ~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-----~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 699 (956)
.|+.-.++ +|++..+..-.+-+..+.-++. .=-.+|++.|...+.- -..-.+=..+++|+++.|.+.|.....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 33333445 5555555443222222110110 0113555555443321 111122234788888888887665443
No 94
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.33 E-value=11 Score=34.58 Aligned_cols=6 Identities=0% Similarity=-0.169 Sum_probs=2.2
Q ss_pred hhcccc
Q 046848 918 LLVKSS 923 (956)
Q Consensus 918 ~~~~~~ 923 (956)
+++.+|
T Consensus 20 ~~~~rR 25 (130)
T PF12273_consen 20 YCHNRR 25 (130)
T ss_pred HHHHHH
Confidence 333333
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.59 E-value=11 Score=42.79 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=17.9
Q ss_pred CCCCCcEEECCCCcCcccc---ccccCCCCCCEEEccCC
Q 046848 288 HMPSLNTLFLASNQFREIP---KSLGNMCNLKSLTLSYN 323 (956)
Q Consensus 288 ~l~~L~~L~Ls~n~l~~ip---~~l~~l~~L~~L~Ls~n 323 (956)
+.+.+..+.|++|++..+. .--..-|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555666666554421 11123455556666655
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=43.54 E-value=22 Score=33.01 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=5.2
Q ss_pred eeeehhhHHHHH
Q 046848 899 FYVSLILGFFVG 910 (956)
Q Consensus 899 ~~~~~~~~~~~~ 910 (956)
.++++++|+++.
T Consensus 50 IVIGvVVGVGg~ 61 (154)
T PF04478_consen 50 IVIGVVVGVGGP 61 (154)
T ss_pred EEEEEEecccHH
Confidence 344444444333
No 97
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=43.31 E-value=12 Score=32.18 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=10.1
Q ss_pred eeeeehhhHHHHHHHhhhhhhh
Q 046848 898 GFYVSLILGFFVGFWGFCGTLL 919 (956)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~ 919 (956)
+.+++++++.++++.+++++++
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHh
Confidence 3455555554444433333333
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.46 E-value=11 Score=33.97 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=12.7
Q ss_pred eeeehhhHHHHHHHhhhhhhhc
Q 046848 899 FYVSLILGFFVGFWGFCGTLLV 920 (956)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~ 920 (956)
.++++++|+++|+++++++++|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHH
Confidence 4566666776666555544333
No 99
>PF15102 TMEM154: TMEM154 protein family
Probab=34.01 E-value=34 Score=31.64 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=6.6
Q ss_pred hhhhhhccccccch
Q 046848 914 FCGTLLVKSSWRHR 927 (956)
Q Consensus 914 ~~~~~~~~~~~~~~ 927 (956)
+++++++++|||.+
T Consensus 75 vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 75 VVCLVIYYKRKRTK 88 (146)
T ss_pred HHHheeEEeecccC
Confidence 33344445555543
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.55 E-value=21 Score=40.48 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=17.5
Q ss_pred CCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCC
Q 046848 187 SSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISC 223 (956)
Q Consensus 187 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~ 223 (956)
+.+..+.|++|++..+..+-......|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444444445544444333333444455555555555
No 101
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=30.05 E-value=59 Score=22.74 Aligned_cols=7 Identities=14% Similarity=0.430 Sum_probs=2.5
Q ss_pred eehhhHH
Q 046848 901 VSLILGF 907 (956)
Q Consensus 901 ~~~~~~~ 907 (956)
+++++.+
T Consensus 15 ~~VvVPV 21 (40)
T PF08693_consen 15 VGVVVPV 21 (40)
T ss_pred EEEEech
Confidence 3333333
No 102
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.60 E-value=19 Score=22.25 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=4.1
Q ss_pred CCcEEECCCC
Q 046848 163 RLQVLDIGFN 172 (956)
Q Consensus 163 ~L~~L~Ls~n 172 (956)
+|++|++++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
No 103
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=26.66 E-value=28 Score=23.81 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=4.7
Q ss_pred eehhhHHHHHH
Q 046848 901 VSLILGFFVGF 911 (956)
Q Consensus 901 ~~~~~~~~~~~ 911 (956)
+++++|+++|+
T Consensus 6 IaIIv~V~vg~ 16 (38)
T PF02439_consen 6 IAIIVAVVVGM 16 (38)
T ss_pred hhHHHHHHHHH
Confidence 33444444444
No 104
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=26.30 E-value=37 Score=30.32 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred hhhhhhccccccch
Q 046848 914 FCGTLLVKSSWRHR 927 (956)
Q Consensus 914 ~~~~~~~~~~~~~~ 927 (956)
+.+++++++.+|++
T Consensus 95 lsg~lv~rrcrrr~ 108 (129)
T PF12191_consen 95 LSGFLVWRRCRRRE 108 (129)
T ss_dssp --------------
T ss_pred HHHHHHHhhhhccc
Confidence 33444444433333
No 105
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=25.12 E-value=58 Score=32.17 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=14.5
Q ss_pred eeeeeehhhHHHHHHHhhhhhhhcc
Q 046848 897 LGFYVSLILGFFVGFWGFCGTLLVK 921 (956)
Q Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (956)
..+++++++|.++++++++++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHH
Confidence 4456666666666655555555554
No 106
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.05 E-value=34 Score=29.39 Aligned_cols=9 Identities=67% Similarity=0.888 Sum_probs=6.6
Q ss_pred CCCeehhHH
Q 046848 1 MSSKWFLVL 9 (956)
Q Consensus 1 ~~~~~~~~~ 9 (956)
|.+|.|+++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 888987743
No 107
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=22.52 E-value=29 Score=32.60 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=0.0
Q ss_pred eeeeehhhHHHHHHHhhhhhh-hccccccchh
Q 046848 898 GFYVSLILGFFVGFWGFCGTL-LVKSSWRHRY 928 (956)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 928 (956)
+.++++++|+++++.++.+++ ++.|||..||
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp --------------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 356777777766665555543 4455565665
No 108
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.13 E-value=62 Score=44.56 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.4
Q ss_pred EccCceeeeeCCccccCCCCCcEEecCCcccc
Q 046848 613 SLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS 644 (956)
Q Consensus 613 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 644 (956)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888666677777888888888887775
Done!