Query 046848
Match_columns 956
No_of_seqs 853 out of 5453
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-89 5.2E-94 841.1 48.7 708 35-874 8-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 6E-70 2.1E-74 667.5 41.1 657 113-865 50-719 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-59 1.7E-63 566.4 48.3 599 105-845 19-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-56 9.4E-61 542.2 49.2 579 83-820 25-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-54 1.2E-58 533.5 41.7 572 117-883 8-600 (844)
6 3t6q_A CD180 antigen; protein- 100.0 1.1E-53 3.8E-58 512.2 42.9 519 114-845 34-565 (606)
7 3t6q_A CD180 antigen; protein- 100.0 6.3E-52 2.1E-56 497.0 40.4 524 83-820 33-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-52 1.9E-56 497.4 38.4 448 269-846 107-564 (606)
9 4eco_A Uncharacterized protein 100.0 5E-53 1.7E-57 505.5 23.8 272 36-407 27-347 (636)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.6E-50 1.6E-54 480.8 39.2 526 105-820 26-562 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-49 1.5E-53 487.6 41.7 523 244-867 8-565 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 1.5E-48 5.1E-53 472.8 32.8 518 34-669 264-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 5.8E-47 2E-51 450.8 35.1 421 270-847 104-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 2.1E-45 7.3E-50 437.3 35.2 497 113-821 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-45 6.4E-50 435.5 33.5 497 70-820 3-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 9.8E-46 3.3E-50 437.9 30.5 485 271-845 10-515 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-44 1.6E-48 431.9 39.1 517 113-844 52-584 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-45 1.3E-49 429.4 24.1 457 269-845 3-486 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-43 6.4E-48 415.0 26.4 449 240-820 21-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 1.8E-43 6.1E-48 428.4 25.4 354 353-842 435-842 (876)
21 4eco_A Uncharacterized protein 100.0 1.5E-44 5.2E-49 432.1 15.2 449 269-842 84-602 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-42 7E-47 409.5 26.0 481 293-873 34-546 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-39 9.4E-44 390.2 37.7 526 244-864 35-582 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-40 6.8E-45 392.5 26.7 446 240-820 52-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 7.3E-39 2.5E-43 369.5 29.2 372 366-847 30-415 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 9.6E-40 3.3E-44 373.1 16.9 432 107-704 5-440 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 1.6E-38 5.6E-43 362.9 25.7 144 240-404 11-167 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 3.4E-37 1.2E-41 355.5 33.0 383 269-697 13-412 (455)
29 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-38 8.6E-43 344.2 16.6 294 35-377 2-302 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5.4E-35 1.8E-39 334.1 32.1 377 103-665 32-408 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.9E-40 339.7 25.7 362 280-846 32-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 4.4E-34 1.5E-38 329.6 33.3 123 560-693 222-344 (466)
33 1o6v_A Internalin A; bacterial 100.0 7.7E-34 2.6E-38 327.6 34.1 214 559-842 177-390 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 8E-35 2.7E-39 337.5 23.0 235 559-845 104-338 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 6E-35 2.1E-39 317.5 20.0 258 559-871 50-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 1.5E-33 5.1E-38 326.8 23.0 234 559-845 128-361 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 3.9E-32 1.3E-36 306.0 26.6 328 389-860 44-371 (390)
38 3oja_B Anopheles plasmodium-re 100.0 4.5E-32 1.5E-36 322.4 25.9 237 559-866 147-384 (597)
39 4fmz_A Internalin; leucine ric 100.0 2.1E-30 7.1E-35 287.2 29.3 215 559-840 132-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 2.9E-30 9.9E-35 286.0 29.5 307 286-693 40-346 (347)
41 3o6n_A APL1; leucine-rich repe 100.0 2.1E-30 7.3E-35 291.8 28.2 309 289-695 44-354 (390)
42 3oja_B Anopheles plasmodium-re 100.0 7.6E-30 2.6E-34 303.3 28.0 309 289-695 50-360 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 7E-33 2.4E-37 320.1 -2.9 86 559-644 199-297 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-32 4.7E-37 317.6 -0.6 39 367-405 86-128 (461)
45 4fcg_A Uncharacterized protein 100.0 1E-30 3.4E-35 285.9 12.6 136 34-196 22-159 (328)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-29 1.1E-33 275.3 24.2 220 559-838 102-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 9.1E-29 3.1E-33 271.7 26.2 220 560-838 101-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-28 8E-33 268.6 24.0 268 366-691 54-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 5.9E-28 2E-32 265.2 25.1 138 559-701 145-284 (330)
50 2z66_A Variable lymphocyte rec 100.0 3.4E-28 1.2E-32 264.1 19.8 235 559-845 28-266 (306)
51 4fcg_A Uncharacterized protein 100.0 2.7E-28 9.2E-33 266.6 18.1 226 559-840 81-314 (328)
52 3zyi_A Leucine-rich repeat-con 100.0 1.2E-27 4E-32 274.7 24.0 233 559-845 75-308 (452)
53 2z80_A TOLL-like receptor 2, v 100.0 2.7E-28 9.2E-33 270.6 14.7 258 533-845 51-319 (353)
54 1ozn_A Reticulon 4 receptor; N 100.0 9E-28 3.1E-32 257.8 18.3 231 560-846 12-244 (285)
55 3zyj_A Leucine-rich repeat-con 100.0 2.8E-27 9.4E-32 270.6 23.0 232 559-844 64-296 (440)
56 3ogk_B Coronatine-insensitive 99.9 1.8E-29 6.1E-34 301.4 1.4 92 579-670 432-527 (592)
57 2z66_A Variable lymphocyte rec 99.9 1.5E-27 5.2E-32 258.9 16.1 275 517-846 11-293 (306)
58 3ogk_B Coronatine-insensitive 99.9 1.1E-28 3.9E-33 294.4 5.9 379 365-841 111-527 (592)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-27 9.4E-32 254.0 15.5 235 559-846 32-267 (285)
60 1wwl_A Monocyte differentiatio 99.9 6.6E-28 2.3E-32 262.1 4.7 245 535-842 44-311 (312)
61 3zyi_A Leucine-rich repeat-con 99.9 1.1E-25 3.6E-30 258.4 22.8 248 517-818 58-305 (452)
62 2z80_A TOLL-like receptor 2, v 99.9 1.9E-26 6.4E-31 255.7 15.5 267 538-861 35-312 (353)
63 3zyj_A Leucine-rich repeat-con 99.9 1.3E-25 4.6E-30 256.7 22.3 247 517-817 47-293 (440)
64 2z62_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 235.7 22.3 228 563-846 11-243 (276)
65 3o53_A Protein LRIM1, AGAP0063 99.9 7.9E-26 2.7E-30 246.3 14.1 238 538-842 14-252 (317)
66 1wwl_A Monocyte differentiatio 99.9 5.1E-27 1.8E-31 255.1 4.6 245 559-864 43-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 1.3E-25 4.4E-30 258.9 16.2 218 559-842 34-252 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1E-26 3.6E-31 253.3 6.6 222 559-846 58-282 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-24 1.5E-28 250.8 26.3 222 534-845 81-302 (622)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-24 9.6E-29 252.3 24.5 188 559-827 121-308 (622)
71 2o6q_A Variable lymphocyte rec 99.9 3.7E-24 1.3E-28 227.3 21.9 206 585-845 18-223 (270)
72 3oja_A Leucine-rich immune mol 99.9 2E-25 7E-30 257.2 10.5 235 533-835 33-270 (487)
73 2p1m_B Transport inhibitor res 99.9 6.8E-27 2.3E-31 279.2 -2.8 204 211-425 103-324 (594)
74 2p1m_B Transport inhibitor res 99.9 5.7E-26 1.9E-30 271.2 4.3 384 364-839 103-518 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 6.5E-24 2.2E-28 226.5 19.0 213 559-820 28-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.6E-28 225.6 20.5 206 579-843 6-211 (290)
77 2o6q_A Variable lymphocyte rec 99.9 5.8E-23 2E-27 218.1 22.0 206 559-819 16-221 (270)
78 3rfs_A Internalin B, repeat mo 99.9 5.8E-24 2E-28 226.0 12.1 222 560-846 20-241 (272)
79 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.2E-28 220.9 14.8 207 559-828 41-247 (272)
80 1p9a_G Platelet glycoprotein I 99.9 2.7E-22 9.3E-27 214.7 19.9 201 559-818 10-210 (290)
81 3m19_A Variable lymphocyte rec 99.9 9.1E-23 3.1E-27 214.0 15.7 191 632-874 36-232 (251)
82 3goz_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 236.6 5.8 256 539-842 3-299 (362)
83 2ca6_A RAN GTPase-activating p 99.9 2.6E-24 8.8E-29 241.6 1.7 235 559-844 32-320 (386)
84 4glp_A Monocyte differentiatio 99.9 4.1E-23 1.4E-27 224.1 8.6 202 583-841 91-308 (310)
85 2xwt_C Thyrotropin receptor; s 99.9 4.4E-22 1.5E-26 207.3 15.7 196 584-837 32-236 (239)
86 4glp_A Monocyte differentiatio 99.9 1.3E-22 4.6E-27 220.0 10.0 226 536-817 66-308 (310)
87 2ast_B S-phase kinase-associat 99.9 7.4E-23 2.5E-27 225.3 7.7 251 536-845 49-311 (336)
88 1h6u_A Internalin H; cell adhe 99.9 2.1E-21 7.2E-26 210.0 16.6 194 580-841 38-231 (308)
89 1h6u_A Internalin H; cell adhe 99.9 4.1E-21 1.4E-25 207.7 18.3 192 559-818 41-232 (308)
90 2xwt_C Thyrotropin receptor; s 99.9 1.8E-21 6E-26 202.7 14.8 198 559-814 31-237 (239)
91 2ca6_A RAN GTPase-activating p 99.9 7.6E-23 2.6E-27 229.6 4.2 189 580-820 91-320 (386)
92 3m19_A Variable lymphocyte rec 99.9 9.2E-21 3.2E-25 198.7 18.3 180 560-818 15-194 (251)
93 3goz_A Leucine-rich repeat-con 99.8 4.9E-22 1.7E-26 220.7 6.0 233 563-842 2-268 (362)
94 2ast_B S-phase kinase-associat 99.8 2.1E-21 7.3E-26 213.6 9.6 221 559-837 47-282 (336)
95 3cvr_A Invasion plasmid antige 99.8 3.2E-20 1.1E-24 215.1 15.3 189 559-827 59-254 (571)
96 2o6s_A Variable lymphocyte rec 99.8 5E-20 1.7E-24 187.1 14.8 139 562-704 10-148 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1.3E-19 4.5E-24 199.9 18.4 226 559-841 30-260 (350)
98 3cvr_A Invasion plasmid antige 99.8 7.8E-20 2.7E-24 211.8 16.4 183 583-845 59-248 (571)
99 2o6s_A Variable lymphocyte rec 99.8 4.2E-20 1.4E-24 187.7 12.2 81 758-845 103-183 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.9E-24 185.8 14.6 157 634-845 14-171 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 3E-19 1E-23 182.6 14.7 156 634-844 14-169 (220)
102 4ay9_X Follicle-stimulating ho 99.8 3E-19 1E-23 197.1 15.7 234 562-854 12-250 (350)
103 3e6j_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 180.1 15.0 157 633-845 21-177 (229)
104 2xot_A Amphoterin-induced prot 99.8 3.8E-19 1.3E-23 197.0 11.5 179 586-843 21-205 (361)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.1E-23 176.4 14.4 137 633-820 34-170 (220)
106 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 4.6E-23 186.1 12.8 186 564-841 29-214 (291)
107 1h6t_A Internalin B; cell adhe 99.8 3.5E-18 1.2E-22 182.9 15.5 175 628-867 43-217 (291)
108 1m9s_A Internalin B; cell inva 99.8 2.6E-18 9E-23 201.5 13.5 127 559-696 43-169 (605)
109 2xot_A Amphoterin-induced prot 99.7 8.5E-18 2.9E-22 186.2 15.7 180 562-793 21-203 (361)
110 2v9t_B SLIT homolog 2 protein 99.7 1.5E-17 5.2E-22 169.9 15.6 141 562-706 14-154 (220)
111 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.6E-22 194.8 16.8 190 561-818 23-212 (605)
112 1w8a_A SLIT protein; signaling 99.7 6.3E-18 2.2E-22 168.8 9.8 133 659-845 11-144 (192)
113 1dce_A Protein (RAB geranylger 99.7 1.1E-19 3.6E-24 212.2 -5.0 191 581-846 347-552 (567)
114 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.6E-22 165.8 11.7 79 758-840 115-194 (197)
115 3e6j_A Variable lymphocyte rec 99.7 9E-17 3.1E-21 165.4 16.2 154 538-697 23-176 (229)
116 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.7E-22 176.1 9.1 170 606-842 18-187 (263)
117 4b8c_D Glucose-repressible alc 99.7 4.2E-18 1.4E-22 205.2 5.9 183 599-843 216-407 (727)
118 1dce_A Protein (RAB geranylger 99.7 8E-19 2.7E-23 204.7 -0.5 201 604-866 346-549 (567)
119 4ezg_A Putative uncharacterize 99.7 3.8E-17 1.3E-21 164.1 11.8 152 606-817 43-195 (197)
120 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 163.7 9.6 156 634-845 11-167 (192)
121 4b8c_D Glucose-repressible alc 99.7 5.9E-18 2E-22 203.9 4.6 194 562-817 204-405 (727)
122 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.8E-22 175.3 6.9 123 559-693 19-141 (263)
123 2wfh_A SLIT homolog 2 protein 99.6 1.3E-15 4.6E-20 151.7 13.9 131 659-844 13-143 (193)
124 2o6r_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 147.5 12.8 134 658-845 9-142 (177)
125 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.8E-20 166.9 10.8 219 559-834 101-328 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.8E-20 145.0 10.0 129 655-836 16-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 147.8 10.4 83 758-840 74-160 (168)
128 2ell_A Acidic leucine-rich nuc 99.6 2.5E-15 8.4E-20 146.6 11.5 136 631-821 24-164 (168)
129 3sb4_A Hypothetical leucine ri 99.6 2.9E-15 1E-19 163.5 10.5 102 582-686 225-327 (329)
130 2wfh_A SLIT homolog 2 protein 99.6 9E-15 3.1E-19 145.7 12.1 129 634-818 13-141 (193)
131 2je0_A Acidic leucine-rich nuc 99.6 5.9E-15 2E-19 140.7 9.1 128 559-689 17-149 (149)
132 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 142.0 12.6 133 633-820 9-141 (177)
133 1ds9_A Outer arm dynein; leuci 99.5 4.4E-16 1.5E-20 156.4 -4.1 150 632-840 19-185 (198)
134 1a9n_A U2A', U2A'; complex (nu 99.5 6.5E-14 2.2E-18 137.5 10.3 81 758-840 67-153 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 7.7E-16 2.6E-20 154.6 -4.6 58 758-817 118-186 (198)
136 4fdw_A Leucine rich hypothetic 99.5 1E-12 3.4E-17 146.4 19.0 219 560-839 158-382 (401)
137 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 133.3 11.0 88 758-845 33-120 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.9E-18 134.0 10.5 130 559-694 19-154 (176)
139 4fdw_A Leucine rich hypothetic 99.4 4.6E-12 1.6E-16 141.0 20.0 126 561-691 250-381 (401)
140 2r9u_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 130.3 11.0 87 758-844 36-122 (174)
141 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 126.4 11.4 109 658-820 11-119 (170)
142 4fs7_A Uncharacterized protein 99.3 2.5E-11 8.4E-16 135.9 20.1 155 281-448 62-217 (394)
143 2r9u_A Variable lymphocyte rec 99.3 4.1E-12 1.4E-16 124.0 11.6 106 659-818 15-120 (174)
144 3un9_A NLR family member X1; l 99.3 6.3E-14 2.2E-18 154.6 -2.5 66 758-823 186-259 (372)
145 4fs7_A Uncharacterized protein 99.3 1.5E-10 5.2E-15 129.4 20.0 38 457-496 156-193 (394)
146 3un9_A NLR family member X1; l 99.2 3.1E-13 1.1E-17 149.0 -3.7 159 607-816 101-283 (372)
147 2ifg_A High affinity nerve gro 99.2 2.3E-11 7.8E-16 133.8 9.9 85 758-843 34-119 (347)
148 2ifg_A High affinity nerve gro 99.1 5E-11 1.7E-15 131.0 7.2 104 635-793 12-117 (347)
149 4gt6_A Cell surface protein; l 99.1 2.2E-08 7.6E-13 111.8 25.4 126 559-692 265-390 (394)
150 4gt6_A Cell surface protein; l 99.0 1.6E-08 5.4E-13 113.0 22.6 65 622-689 256-320 (394)
151 2ra8_A Uncharacterized protein 98.8 1.3E-09 4.3E-14 119.0 3.3 82 755-838 252-341 (362)
152 4h09_A Hypothetical leucine ri 98.7 1.1E-06 3.9E-11 97.3 24.5 141 559-705 217-357 (379)
153 4h09_A Hypothetical leucine ri 98.6 2.4E-06 8.3E-11 94.7 21.4 49 386-437 42-90 (379)
154 2ra8_A Uncharacterized protein 98.6 1.8E-07 6.3E-12 101.8 11.2 139 282-428 164-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.3 1.3E-07 4.5E-12 92.8 2.6 65 776-840 90-164 (185)
156 3rw6_A Nuclear RNA export fact 98.3 5.5E-07 1.9E-11 92.7 5.5 65 754-820 169-237 (267)
157 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6.2E-12 96.3 1.4 40 654-693 168-209 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 7.9E-07 2.7E-11 87.2 4.0 67 284-356 30-106 (185)
159 3e4g_A ATP synthase subunit S, 97.9 4E-06 1.4E-10 79.8 3.3 34 114-148 62-95 (176)
160 3e4g_A ATP synthase subunit S, 97.7 3.4E-06 1.2E-10 80.3 -0.6 86 138-225 61-151 (176)
161 3rfe_A Platelet glycoprotein I 97.1 0.00061 2.1E-08 61.8 6.4 59 783-843 12-71 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00021 7.2E-09 69.3 1.4 89 604-692 67-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0013 4.6E-08 63.7 4.9 40 288-327 39-84 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0058 2E-07 55.3 5.8 57 758-816 11-68 (130)
165 2k1k_A Ephrin type-A receptor 43.1 7.1 0.00024 26.0 0.7 22 898-919 11-32 (38)
166 2jwa_A Receptor tyrosine-prote 29.7 12 0.00042 25.6 0.2 22 900-921 14-35 (44)
167 2lz0_A Uncharacterized protein 28.4 51 0.0018 27.4 3.9 13 578-590 15-27 (100)
168 2lz0_A Uncharacterized protein 26.9 84 0.0029 26.0 5.0 48 593-641 6-53 (100)
169 2l9u_A Receptor tyrosine-prote 24.1 25 0.00087 22.2 0.9 19 903-921 12-30 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-89 Score=841.11 Aligned_cols=708 Identities=30% Similarity=0.447 Sum_probs=484.3
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCccccceeecCCCCcEEEEECCCCCCCCCCCCccc---ccccccc
Q 046848 35 RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGT---ISSSLLI 111 (956)
Q Consensus 35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~---l~~~l~~ 111 (956)
.+.++|++||++||+++.||. .+++|+ .+++||.|+||+|+ +|+|+.++|++ ..+.|. +++++.+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~------~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS------KPLNVGFSAVSSSLLS 75 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT------SCCCEEHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC------CCcCCccCccChhHhc
Confidence 356889999999999999988 899997 46799999999998 69999999998 678888 8999999
Q ss_pred ccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCc--cCCCCCCCcEEECCCCCCCCCCCccccCCCCCC
Q 046848 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPL--QLGNLSRLQVLDIGFNSLISGENLEWLSHLSSL 189 (956)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 189 (956)
+++|+.++++.+.+. .+|+.++++++|++|+|++|.++|.+|. .++++++|++|++++|.+........+.++++|
T Consensus 76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 999999999999876 4778999999999999999999999998 999999999999999987433333345899999
Q ss_pred cEEecccccCCCCchh-HHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhccccc
Q 046848 190 IYLDLSFSNLSKFSNW-MQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLV 268 (956)
Q Consensus 190 ~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~ 268 (956)
++|++++|.+++.... ...+.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|. +.+++. |
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~-L- 225 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-----SRCVNLEFLDVSSNNFSTGIPF-LGDCSA-L- 225 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-----TTCTTCCEEECCSSCCCSCCCB-CTTCCS-C-
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-----ccCCcCCEEECcCCcCCCCCcc-cccCCC-C-
Confidence 9999999999875321 12278888999999988888776552 2336666666666666655544 444444 5
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhc-CCCCccCCCC
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL-SDGCTKTSLA 346 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~~~~~~~L~ 346 (956)
++|++++|.+++.+|..+..+++|++|++++|.+++ +|.. .+++|++|++++|.+++.+|..+... + +|+
T Consensus 226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~------~L~ 297 (768)
T 3rgz_A 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD------TLT 297 (768)
T ss_dssp CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT------TCS
T ss_pred CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC------cCC
Confidence 555555555555555555555555555555555554 3322 45555555555555554444443332 3 455
Q ss_pred EEEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchh-hcCCCCCCEEECcCccCccccCHHhhhCCC-CCCEEEcC
Q 046848 347 WLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKS-VGQLVKLESLFLHNNSLRGVISEAFLSNLS-NLTILYLA 423 (956)
Q Consensus 347 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~Ls 423 (956)
+|++++|.+++.+|. ++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|.. +..++ +|++|+++
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLS 376 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECC
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEcc
Confidence 555555555544443 445555555555555554444433 445555555555555555444443 23333 45555555
Q ss_pred CCcccccccCCcCC--CCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEeccccccc
Q 046848 424 DNSLTLEFSHDWIP--PFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK 501 (956)
Q Consensus 424 ~n~l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~ 501 (956)
+|.+++..+..+.. .++|++|++++|.+.+.+|.++..+++|++|++++|.+++.+|..+.. +++|++|++++|.++
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 455 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCccc
Confidence 55554444333332 344444444444444444444444444444444444444444433322 223444443333333
Q ss_pred ccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccC
Q 046848 502 GKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQ 581 (956)
Q Consensus 502 ~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 581 (956)
+.+|.. +... ++|++|++++|++++.+|..+.+
T Consensus 456 ~~~p~~---------------------------------------------~~~l--~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 456 GEIPQE---------------------------------------------LMYV--KTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp SCCCGG---------------------------------------------GGGC--TTCCEEECCSSCCCSCCCGGGGG
T ss_pred CcCCHH---------------------------------------------HcCC--CCceEEEecCCcccCcCCHHHhc
Confidence 332221 1111 56777777777777777777777
Q ss_pred CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEE
Q 046848 582 FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVL 661 (956)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 661 (956)
+++|++|++++|++++.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.+++ ....+..+
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~ 567 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAA 567 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCC
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777666 34444333
Q ss_pred EccCC----------------------cccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccc
Q 046848 662 SLKSN----------------------KFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719 (956)
Q Consensus 662 ~L~~N----------------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 719 (956)
++..+ .+.+..+..+..++.++.++++.|.++|.+|..++
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~------------------ 629 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD------------------ 629 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS------------------
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh------------------
Confidence 33221 12223333333344444444444444444444444
Q ss_pred ccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc
Q 046848 720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799 (956)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 799 (956)
.++.|++|||++|+++|.+|.++++++.|+.|||++|+++|.+|+.+
T Consensus 630 ---------------------------------~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 630 ---------------------------------NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp ---------------------------------SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ---------------------------------ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 44455999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCCCCCCCCCC
Q 046848 800 GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKCPDE 874 (956)
Q Consensus 800 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~~ 874 (956)
+++++|++|||++|+++|.+|+.++++++|++||+++|+++|.||..+++.+|...+|.|| .|||.|+. .|...
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999987 78543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-70 Score=667.50 Aligned_cols=657 Identities=29% Similarity=0.391 Sum_probs=505.9
Q ss_pred cCCCEEeCCCCCCCCCC---CCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCcc--ccCCCC
Q 046848 113 QHLTYLDLSGNNFSGSS---IPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLE--WLSHLS 187 (956)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~--~l~~l~ 187 (956)
.+++.|||+++.+.+ . +|+.+.++++|++++++.+.+. .+|..++++++|++|||++|.+ ....+. .+++++
T Consensus 50 ~~v~~L~L~~~~l~g-~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNV-GFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSL-SGPVTTLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCE-EHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEE-EEEGGGGGGGGGCT
T ss_pred CcEEEEECCCCCcCC-ccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcC-CCcCCChHHHhCCC
Confidence 478899999998886 3 6788899999999999988775 4678899999999999999876 222233 455566
Q ss_pred CCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchh---hHhhc
Q 046848 188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPW---LFNVS 264 (956)
Q Consensus 188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~~~ 264 (956)
+|++|++++|.+. +..+ ..+...+++|++|++++|.+.+..+.. +.++.
T Consensus 127 ~L~~L~Ls~n~l~--------------------------~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 127 GLKFLNVSSNTLD--------------------------FPGK--VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TCCEEECCSSEEE--------------------------CCSS--CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCEEECcCCccC--------------------------CcCC--HHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 6666666655544 3333 222233367777777777777766665 45555
Q ss_pred ccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCC
Q 046848 265 SNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTS 344 (956)
Q Consensus 265 ~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~ 344 (956)
. | ++|++++|.+.+..|. ..+++|++|++++|.+++.++.+.++++|++|++++|.+++.+|..+..++ +
T Consensus 179 ~-L-~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~------~ 248 (768)
T 3rgz_A 179 E-L-KHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT------E 248 (768)
T ss_dssp T-C-CEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCS------S
T ss_pred C-C-CEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCC------C
Confidence 5 7 8888888888876553 788899999999999888333488899999999999999988888888887 8
Q ss_pred CCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCC-CCCCEEECcCccCccccCHHhhhCCCCCCEEEcC
Q 046848 345 LAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQL-VKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA 423 (956)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 423 (956)
|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|++++.+|.. ++.+++|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECC
T ss_pred CCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECC
Confidence 999999999998877766 78889999999999988888887765 88999999999988887774 7888888888888
Q ss_pred CCcccccccCC-cCCCCCcceEEcCCCCCCCCCchhhhccc-ceeEEEeeCCCCCCCccchhhhc-cCCcceEecccccc
Q 046848 424 DNSLTLEFSHD-WIPPFQLSQVNLGSCKIGPRFPKWLRNQN-QILSLDISNSGISDTVPNWFWNQ-TYNLSFFNLSNNQI 500 (956)
Q Consensus 424 ~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~-~~~L~~L~Ls~n~l 500 (956)
+|.+++..+.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+... .++|++|++++|++
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 88887655443 55666666666666666666666666665 66666666666666555554432 34566666666655
Q ss_pred cccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcccc
Q 046848 501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWS 580 (956)
Q Consensus 501 ~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 580 (956)
++.+|..+. .. ++|++|++++|++++.+|..+.
T Consensus 407 ~~~~p~~l~---------------------------------------------~l--~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 407 TGKIPPTLS---------------------------------------------NC--SELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp EEECCGGGG---------------------------------------------GC--TTCCEEECCSSEEESCCCGGGG
T ss_pred ccccCHHHh---------------------------------------------cC--CCCCEEECcCCcccCcccHHHh
Confidence 554443321 11 6789999999999999999999
Q ss_pred CCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcE
Q 046848 581 QFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV 660 (956)
Q Consensus 581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 660 (956)
.+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.++++|++|+|++|++++.+|.++. .+++|++
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~ 518 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAI 518 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888 6999999
Q ss_pred EEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848 661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV 740 (956)
Q Consensus 661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (956)
|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.....+........ ..+.......... ........
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~ 593 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG----KRYVYIKNDGMKK-ECHGAGNL 593 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS----CEEEEEECCSCCT-TCCSSEEE
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc----ccccccccccccc-cccccccc
Confidence 999999999999999999999999999999999999988877666543321110 0000000000000 00000011
Q ss_pred EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848 741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
....+........+..+..++++.|.++|.+|..+..+++|+.|||++|+++|.+|.+++++++|+.|||++|+++|.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 12233333344455666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEECcCCcceecCCCC-CcCCccccccccCCCCCCC
Q 046848 821 SSLSQLSRLSVMDLSYNNLSGKIPSG-TQLQSFSTSMYAGNELCGL 865 (956)
Q Consensus 821 ~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~~ 865 (956)
+.++++++|++||+++|+++|.||.. ..+..+....+.+|.+.|.
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 99999999999999999999999975 4555666667788877764
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-59 Score=566.42 Aligned_cols=599 Identities=22% Similarity=0.239 Sum_probs=406.5
Q ss_pred cccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccC
Q 046848 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLS 184 (956)
Q Consensus 105 l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~ 184 (956)
+|..+. +++++|+|++|.+++. .+..++++++|++|+|++|.+++..|..|+++++|++|++++|.+ .......++
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~ 94 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFA 94 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhc
Confidence 444443 5677777777777653 344567777777777777777766666677777777777777665 222222355
Q ss_pred CCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhc
Q 046848 185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVS 264 (956)
Q Consensus 185 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 264 (956)
++++|++|++++|.++++ .+ ..+... ++|++|++++|.+.+..+..+..++
T Consensus 95 ~l~~L~~L~L~~n~l~~~--------------------------~~--~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~ 145 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKI--------------------------KN--NPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLE 145 (680)
T ss_dssp TCTTCSEEECCSSCCCCC--------------------------CS--CTTTTC-TTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred cCCCCCEEECCCCccCcc--------------------------Ch--hHcccc-CCCCEEECCCCcccccCchhhcccc
Confidence 555555555555544432 22 222333 6777777777777766666665665
Q ss_pred ccccceEEecccccccCCCcccC--CCCCCcEEECCCCcCcc-ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCc
Q 046848 265 SNLVELINLGSNQLQGSIPEAFG--HMPSLNTLFLASNQFRE-IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCT 341 (956)
Q Consensus 265 ~~L~~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~ 341 (956)
+ | ++|++++|.+++..+..+. .+++|++|++++|.+++ .|..+..+++|+.|+++++.+.......+.... .
T Consensus 146 ~-L-~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l---~ 220 (680)
T 1ziw_A 146 N-L-QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL---A 220 (680)
T ss_dssp T-C-CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH---T
T ss_pred c-C-CEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh---h
Confidence 5 6 7777777776665555443 44667777777776666 345566666777777766665433222221100 0
Q ss_pred cCCCCEEEccCCcCcccCCC-CCCCCC--CCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCC
Q 046848 342 KTSLAWLFLDSNEITGSLPN-FGGFSS--LKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLT 418 (956)
Q Consensus 342 ~~~L~~L~Ls~n~l~~~~~~-~~~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 418 (956)
.++|+.|++++|.+++..+. +..++. |++|++++|.+++..+..++.+++|++|++++|++++..+.. +..+++|+
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~ 299 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVR 299 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCC
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCcc
Confidence 11666666666666655544 444433 666666666666655566666666666666666666555542 55666666
Q ss_pred EEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccc
Q 046848 419 ILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN 498 (956)
Q Consensus 419 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n 498 (956)
+|++++|...+..... .+.......+..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 300 ~L~L~~~~~~~~~~~~---------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLA---------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNS 363 (680)
T ss_dssp EEECTTCBCCC---------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTC
T ss_pred EEeccchhhhcccccc---------------cccccChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCC
Confidence 6666654332211000 00000112455566666666666666654444332 3456666666666
Q ss_pred cccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcc
Q 046848 499 QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC 578 (956)
Q Consensus 499 ~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 578 (956)
.+.+..... . .......++|+.|++++|++++..|..
T Consensus 364 ~~~~~~l~~---------------~----------------------------~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 364 FTSLRTLTN---------------E----------------------------TFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp BSCCCEECT---------------T----------------------------TTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred chhhhhcch---------------h----------------------------hhcccccCcCceEECCCCCCCeEChhh
Confidence 543111000 0 000000157999999999999988999
Q ss_pred ccCCCCCCEEEcCCCcccccCC-CCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcccc--ccCChhHhhcC
Q 046848 579 WSQFDSLAILNLANNSFFGKIP-DSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLS--GEIPTWIGEGL 655 (956)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~ip~~~~~~l 655 (956)
+..+++|+.|++++|.+.+.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.+. +.+|..+. ++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l 479 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PL 479 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TC
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cC
Confidence 9999999999999999988766 68899999999999999999999999999999999999999986 57788777 79
Q ss_pred ccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccc
Q 046848 656 VNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSY 735 (956)
Q Consensus 656 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (956)
++|++|++++|++++..|..+.++++|++|++++|++++..+..+..-
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------------------- 527 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG-------------------------------- 527 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS--------------------------------
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC--------------------------------
Confidence 999999999999998888889999999999999999986543332110
Q ss_pred ccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCcc
Q 046848 736 FDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF 815 (956)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 815 (956)
...++..++.|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 528 -----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 528 -----------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp -----------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred -----------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 001123455669999999999965556799999999999999999977777789999999999999999
Q ss_pred CcCCccccc-CCCCCCeEECcCCcceecCCC
Q 046848 816 FGSIPSSLS-QLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 816 ~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~ 845 (956)
++..|..+. .+++|+.+++++|++.|.++.
T Consensus 597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999988887 789999999999999999875
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-56 Score=542.20 Aligned_cols=579 Identities=24% Similarity=0.255 Sum_probs=424.9
Q ss_pred CcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 046848 83 GHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLS 162 (956)
Q Consensus 83 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~ 162 (956)
.+++.|++++ +.+++..+.++.++++|++|+|++|.+++. .|..++++++|++|+|++|.+++..+..|++++
T Consensus 25 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTH------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCS------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCC------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 5789999998 677776667899999999999999999976 788899999999999999999966666899999
Q ss_pred CCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCc
Q 046848 163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSL 242 (956)
Q Consensus 163 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 242 (956)
+|++|++++|.+ ....+..++++++|++|++++|.+++.. +..++++ ++|
T Consensus 98 ~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l---------------------------~~L 147 (680)
T 1ziw_A 98 NLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQL---------------------------ENL 147 (680)
T ss_dssp TCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCC---------------------------TTC
T ss_pred CCCEEECCCCcc-CccChhHccccCCCCEEECCCCcccccC--chhhccc---------------------------ccC
Confidence 999999999998 4445567899999999999999887642 2233444 455
Q ss_pred cEEEcCCCcCCCCcchhhHh--hcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-----ccccccCCCCC
Q 046848 243 EVIVILGNNLTDSIYPWLFN--VSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-----IPKSLGNMCNL 315 (956)
Q Consensus 243 ~~L~L~~n~l~~~~~~~l~~--~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----ip~~l~~l~~L 315 (956)
++|++++|.+.+..+..+.. ... | +.|++++|.+++..|..+..+++|+.|+++++.+.. ++..+ ..++|
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~-L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L 224 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSS-L-KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSI 224 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCE-E-SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCC
T ss_pred CEEEccCCcccccCHHHhhcccccc-c-cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccc
Confidence 55555555555444443332 233 6 777888888877777788888888888888887654 12222 35788
Q ss_pred CEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchhhcCCCCCCE
Q 046848 316 KSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKSVGQLVKLES 394 (956)
Q Consensus 316 ~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 394 (956)
+.|++++|.+++..|..+..+. .++|++|++++|.+++..+. ++.+++|++|++++|.+.+..|..+..+++|++
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLK----WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGG----GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred cEEEccCCcccccChhHhhccC----cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 8999999988888887777664 11499999999998887765 888999999999999999888888999999999
Q ss_pred EECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCC
Q 046848 395 LFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSG 474 (956)
Q Consensus 395 L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 474 (956)
|++++|...+.++. ..+ .......+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 301 L~L~~~~~~~~~~~---~~l-------------p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 301 LNLKRSFTKQSISL---ASL-------------PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp EECTTCBCCC---------C-------------CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred Eeccchhhhccccc---ccc-------------cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 99988765543221 000 00111123334444455555555555555556666666666666665
Q ss_pred CCCCc-cchhhh--ccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccc
Q 046848 475 ISDTV-PNWFWN--QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSIS 551 (956)
Q Consensus 475 i~~~~-~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~ 551 (956)
+.... +...+. ..++|+.|++++|++++..|..+..
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~----------------------------------------- 403 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW----------------------------------------- 403 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-----------------------------------------
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-----------------------------------------
Confidence 43322 111111 1135667777766666544432211
Q ss_pred hhhhccCCceeEEECCCCCCCCCCC-ccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCcccc
Q 046848 552 FLCSITGHKLDYIDLSNNLLSGRLP-DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSFFT 628 (956)
Q Consensus 552 ~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~ 628 (956)
.++|+.|++++|.+++.+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..|.
T Consensus 404 ------l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 404 ------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp ------CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred ------CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 1567777777777776555 56778888888888888888777778888888888888888876 56777888
Q ss_pred CCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC--------ccccCCCCcCEEeccCCcCCCCcChhc
Q 046848 629 NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP--------LQLCHLANVQILDLSSNNISGIIPKCF 700 (956)
Q Consensus 629 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 700 (956)
++++|+.|++++|+++ .+|...+.++++|++|++++|++++..+ ..+.++++|+.|+|++|+++...+..|
T Consensus 478 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 8888888888888888 4555444478888888888888875422 237889999999999999986555567
Q ss_pred cccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcccc
Q 046848 701 NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG 780 (956)
Q Consensus 701 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 780 (956)
.++++| +.|||++|++++..+..|..+++
T Consensus 557 ~~l~~L---------------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 557 KDLFEL---------------------------------------------------KIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp TTCTTC---------------------------------------------------CEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCc---------------------------------------------------ceeECCCCCCCcCCHhHhCCCCC
Confidence 776666 88999999999877777899999
Q ss_pred CCEEEcccccccccCCcccc-CCCCCCEEECCCCccCcCCc
Q 046848 781 LIALNLSRNTLTGQITPKIG-QLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 781 L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~~~ip 820 (956)
|+.|+|++|++++..|..++ .+++|+.|++++|++....+
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999988888787 78999999999999987654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-54 Score=533.47 Aligned_cols=572 Identities=21% Similarity=0.248 Sum_probs=381.9
Q ss_pred EEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEeccc
Q 046848 117 YLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSF 196 (956)
Q Consensus 117 ~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 196 (956)
..|.++++++ .+|. ..++|++|+|++|.+++..|..|.++++|++|++++|.......+..++++++|++|++++
T Consensus 8 ~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 3445555555 3454 2356666666666666555666666666666666666432222233344444444444444
Q ss_pred ccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEeccc
Q 046848 197 SNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSN 276 (956)
Q Consensus 197 n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n 276 (956)
|.+++. .| ..+.+. ++ | ++|++++|
T Consensus 83 N~l~~~--------------------------~p--~~~~~l-~~-------------------------L-~~L~Ls~n 107 (844)
T 3j0a_A 83 SKIYFL--------------------------HP--DAFQGL-FH-------------------------L-FELRLYFC 107 (844)
T ss_dssp CCCCEE--------------------------CT--TSSCSC-SS-------------------------C-CCEECTTC
T ss_pred CcCccc--------------------------CH--hHccCC-cc-------------------------c-CEeeCcCC
Confidence 443332 11 111111 33 3 44444444
Q ss_pred ccccCCCc--ccCCCCCCcEEECCCCcCccc--cccccCCCCCCEEEccCCCCCCcchHHHhhc--CCCCccCCCCEEEc
Q 046848 277 QLQGSIPE--AFGHMPSLNTLFLASNQFREI--PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNL--SDGCTKTSLAWLFL 350 (956)
Q Consensus 277 ~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~i--p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~~~~~~~L~~L~L 350 (956)
.+++.+|. .+.++++|++|++++|.++++ +..|.++++|++|++++|.+++..+..+..+ + +|+.|++
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~------~L~~L~L 181 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK------TLSFFSL 181 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC------SSCCCEE
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC------ccceEEC
Confidence 44443333 377788888888888888774 3567888888888888888887777777665 4 7888888
Q ss_pred cCCcCcccCCC-CCCCCC------CCEEEeeccccccccchhhcCC---CCCCEEECcCccCccccCHHhhhCCCCCCEE
Q 046848 351 DSNEITGSLPN-FGGFSS------LKRLSIANNRLNGTINKSVGQL---VKLESLFLHNNSLRGVISEAFLSNLSNLTIL 420 (956)
Q Consensus 351 s~n~l~~~~~~-~~~l~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 420 (956)
++|.+.+..+. +..+++ |++|++++|.+++..+..+... .+++.+.++.+.....
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------- 246 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------- 246 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------
Confidence 88888776554 444443 7888888887776666655432 4566777664332211
Q ss_pred EcCCCcccccccCCcCCC--CCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccc
Q 046848 421 YLADNSLTLEFSHDWIPP--FQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN 498 (956)
Q Consensus 421 ~Ls~n~l~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n 498 (956)
+..+.+.......+..+ .+|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+. .+++|++|++++|
T Consensus 247 -~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 247 -FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYN 324 (844)
T ss_dssp -SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESC
T ss_pred -ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCC
Confidence 11122222222333332 4566666666666666666666777777777777777665555443 3456777777666
Q ss_pred cccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcc
Q 046848 499 QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDC 578 (956)
Q Consensus 499 ~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 578 (956)
.+++..|..+.. .++|+.|++++|.+++..+..
T Consensus 325 ~l~~~~~~~~~~-----------------------------------------------l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 325 LLGELYSSNFYG-----------------------------------------------LPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp CCSCCCSCSCSS-----------------------------------------------CTTCCEEECCSCCCCCCCSSC
T ss_pred CCCccCHHHhcC-----------------------------------------------CCCCCEEECCCCCCCccChhh
Confidence 665433332111 067889999999998888888
Q ss_pred ccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCCh-hHhhcCcc
Q 046848 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT-WIGEGLVN 657 (956)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~ 657 (956)
|..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++ ++. .....+++
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~ 427 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLEN-LDILYFLLRVPH 427 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTT
T ss_pred hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCcccc-CchhhhhhcCCc
Confidence 99999999999999998843 23789999999999998 55543 5679999999999984 432 22336899
Q ss_pred CcEEEccCCcccccCCc-cccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccc
Q 046848 658 LVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYF 736 (956)
Q Consensus 658 L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (956)
|++|++++|++++..+. .+..+++|+.|++++|.+++..+..+.
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~----------------------------------- 472 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC----------------------------------- 472 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC-----------------------------------
T ss_pred cceeeCCCCcccccccccccccCCccccccCCCCccccccccccc-----------------------------------
Confidence 99999999999865443 456689999999999999844332110
Q ss_pred cceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848 737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816 (956)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 816 (956)
...+..++.|+.|||++|++++.+|..|..+++|+.|+|++|++++..|..+. ++|+.|||++|+++
T Consensus 473 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 473 -----------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp -----------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred -----------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 00112344569999999999999999999999999999999999987777666 89999999999999
Q ss_pred cCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCCCCCCCCCCCCCCCCCCC
Q 046848 817 GSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKCPDEDSAPGPGKD 883 (956)
Q Consensus 817 ~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~~~~~~~~~~~ 883 (956)
+.+|..+. +|+.+++++|++.|.|+.. .|.......+ .++|.|....|..|....+.+..
T Consensus 540 ~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~ 600 (844)
T 3j0a_A 540 APNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLF 600 (844)
T ss_dssp CCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTT
T ss_pred CCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCchhhCCCccc
Confidence 99998765 6899999999999998743 3332223445 78888888889877766554443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-53 Score=512.22 Aligned_cols=519 Identities=21% Similarity=0.176 Sum_probs=378.4
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEe
Q 046848 114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLD 193 (956)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 193 (956)
++++|||++|.+++. .|..|+++++|++|+|++|++++..|.+|+++++|++|++++|.+ ....+..++++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-SEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc-cccChhhhcccccccEee
Confidence 577777777777754 466777777777777777777766777777777777777777765 112222233333333333
Q ss_pred cccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEe
Q 046848 194 LSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINL 273 (956)
Q Consensus 194 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~L 273 (956)
++
T Consensus 112 L~------------------------------------------------------------------------------ 113 (606)
T 3t6q_A 112 FI------------------------------------------------------------------------------ 113 (606)
T ss_dssp CT------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 33
Q ss_pred cccccccCCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCC--EEEc
Q 046848 274 GSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA--WLFL 350 (956)
Q Consensus 274 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~--~L~L 350 (956)
+|.+++..+..+..+++|++|++++|.+++++ +.+..+++|++|++++|.+++..+..+..++ +|+ .|++
T Consensus 114 -~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~l~L~l 186 (606)
T 3t6q_A 114 -QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ------QATNLSLNL 186 (606)
T ss_dssp -TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT------TCCSEEEEC
T ss_pred -ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc------ccceeEEec
Confidence 33333333344667778888888888887742 3344588888888888888877788888777 777 7888
Q ss_pred cCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccc----cCHHhhhCCCCCCEEEcCCCc
Q 046848 351 DSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGV----ISEAFLSNLSNLTILYLADNS 426 (956)
Q Consensus 351 s~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~ 426 (956)
++|.+++..|......+|++|++++|. .++..+..+..++...+....+.+. ++...+..+.
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~----------- 252 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC----------- 252 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG-----------
T ss_pred CCCccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhh-----------
Confidence 888888777775556778888888776 3344455555554433332222111 1111111111
Q ss_pred ccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCC
Q 046848 427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPN 506 (956)
Q Consensus 427 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 506 (956)
..+++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..|.
T Consensus 253 -----------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 253 -----------EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp -----------GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGG
T ss_pred -----------cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchh
Confidence 114555666666665555566666666666666666665 444443 2344566666666655533332
Q ss_pred CCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCc-cccCCCCC
Q 046848 507 LSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPD-CWSQFDSL 585 (956)
Q Consensus 507 ~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L 585 (956)
.+. . .++|++|++++|.+.+.+|. .+..+++|
T Consensus 320 ~~~---------------------------------------------~--l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 320 SAS---------------------------------------------N--FPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp CGG---------------------------------------------G--CTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hhh---------------------------------------------c--cCcCCEEECCCCCcccccchhhhhccCcC
Confidence 110 1 16788888888888866654 48889999
Q ss_pred CEEEcCCCcccccC--CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEc
Q 046848 586 AILNLANNSFFGKI--PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSL 663 (956)
Q Consensus 586 ~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L 663 (956)
++|++++|.+.+.. |..+..+++|++|++++|++++..|..|..+++|+.|++++|++.+..|...+..+++|++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 99999999998766 7789999999999999999999999999999999999999999987777664557999999999
Q ss_pred cCCcccccCCccccCCCCcCEEeccCCcCCCCc---ChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848 664 KSNKFNGSIPLQLCHLANVQILDLSSNNISGII---PKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV 740 (956)
Q Consensus 664 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (956)
++|.+.+..|..+..+++|++|++++|++++.. +..+..+++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~----------------------------------- 477 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR----------------------------------- 477 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT-----------------------------------
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC-----------------------------------
Confidence 999999888999999999999999999998632 234444444
Q ss_pred EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848 741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
|++|+|++|++++..|..+..+++|+.|+|++|++++.+|+.+.+++.| .|++++|++++.+|
T Consensus 478 ----------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 478 ----------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp ----------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ----------------ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 4899999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccccCCCCCCeEECcCCcceecCCC
Q 046848 821 SSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 821 ~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
..+..+++|+.+++++|++.|.++.
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGGG
T ss_pred hhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999874
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.3e-52 Score=497.01 Aligned_cols=524 Identities=20% Similarity=0.182 Sum_probs=361.7
Q ss_pred CcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCC
Q 046848 83 GHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLS 162 (956)
Q Consensus 83 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~ 162 (956)
..++.|++++ +.+++..+.++.++++|++|+|++|.+.+. .|..|+++++|++|+|++|++++..|..|++++
T Consensus 33 ~~l~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 33 NSTECLEFSF------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TTCCEEECTT------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CcCcEEEccC------CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 4689999998 678877788999999999999999999875 688999999999999999999988899999999
Q ss_pred CCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCc
Q 046848 163 RLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSL 242 (956)
Q Consensus 163 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 242 (956)
+|++|++++|.+ ....+..++++++|++|++++|.+.+++. + .+.. +++|
T Consensus 106 ~L~~L~L~~n~i-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------~---~~~~-l~~L 155 (606)
T 3t6q_A 106 ALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKL-------------------------P---KGFP-TEKL 155 (606)
T ss_dssp TCCEEECTTSCC-SCGGGSCCTTCTTCCEEECCSSCCCCCCC-------------------------C---TTCC-CTTC
T ss_pred cccEeeccccCc-ccCCcchhccCCcccEEECCCCcccccCc-------------------------c---cccC-Cccc
Confidence 999999999997 33334456677777777777766655310 1 1111 2455
Q ss_pred cEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCc--EEECCCCcCccccccccCCCCCCEEEc
Q 046848 243 EVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLN--TLFLASNQFREIPKSLGNMCNLKSLTL 320 (956)
Q Consensus 243 ~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~ip~~l~~l~~L~~L~L 320 (956)
++|++++|. +++..|..++.+++|+ .|++++|.++++++......+|++|++
T Consensus 156 ~~L~L~~n~--------------------------l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 156 KVLDFQNNA--------------------------IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CEEECCSSC--------------------------CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred CEEEcccCc--------------------------ccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 555555544 4444455555666666 667777777765444444466777777
Q ss_pred cCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCc
Q 046848 321 SYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNN 400 (956)
Q Consensus 321 s~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 400 (956)
++|. ..+..+..+. .+....+....+. .+...++....+ ..+... +|++|++++|
T Consensus 210 ~~~~---~~~~~~~~l~------~~~l~~l~~~~~~----------~~~~~~i~~~~~-----~~l~~~-~L~~L~l~~n 264 (606)
T 3t6q_A 210 GGTQ---NLLVIFKGLK------NSTIQSLWLGTFE----------DMDDEDISPAVF-----EGLCEM-SVESINLQKH 264 (606)
T ss_dssp TTCS---CHHHHHHHTT------TCEEEEEECCCCT----------TSCCCCCCGGGG-----GGGGGS-EEEEEECTTC
T ss_pred CCch---hHHHHhhhcc------ccchhheechhhc----------cccccccChhHh-----chhhcC-ceeEEEeecC
Confidence 7775 3455555554 3333333222211 111111111111 111111 4555666666
Q ss_pred cCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCcc
Q 046848 401 SLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVP 480 (956)
Q Consensus 401 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 480 (956)
.+++..+. .+..+++|++|++++|.++ ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|
T Consensus 265 ~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 265 YFFNISSN-TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCSSCCTT-TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred ccCccCHH-HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 55554443 2455555555555555554 222233333444444444444444444445555555555555555443333
Q ss_pred chhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCc
Q 046848 481 NWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHK 560 (956)
Q Consensus 481 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~ 560 (956)
......+ ++
T Consensus 343 ~~~~~~l-----------------------------------------------------------------------~~ 351 (606)
T 3t6q_A 343 TGCLENL-----------------------------------------------------------------------EN 351 (606)
T ss_dssp SSTTTTC-----------------------------------------------------------------------TT
T ss_pred hhhhhcc-----------------------------------------------------------------------Cc
Confidence 3222222 45
Q ss_pred eeEEECCCCCCCCCC--CccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCc-cccCCCCCcEEe
Q 046848 561 LDYIDLSNNLLSGRL--PDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPS-FFTNGSQLTLMD 637 (956)
Q Consensus 561 L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ 637 (956)
|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|++|++++|++++..|. .+..+++|++|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 666666666666544 66778888888888888888888888888888888888888888877654 488888899999
Q ss_pred cCCccccccCChhHhhcCccCcEEEccCCccccc---CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGS---IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL 714 (956)
Q Consensus 638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 714 (956)
+++|.+++..|..+. .+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..|..++.|
T Consensus 432 l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------- 502 (606)
T 3t6q_A 432 LSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-------- 502 (606)
T ss_dssp CTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC--------
T ss_pred CCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC--------
Confidence 999988866666665 688999999999988763 23568889999999999999998888888777666
Q ss_pred cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794 (956)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 794 (956)
+.|||++|++++.+|..+.+++.| .|+|++|++++.
T Consensus 503 -------------------------------------------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 503 -------------------------------------------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp -------------------------------------------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred -------------------------------------------CEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 889999999999999999999999 999999999988
Q ss_pred CCccccCCCCCCEEECCCCccCcCCc
Q 046848 795 ITPKIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 795 ip~~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
+|..++.+++|+.|++++|++++..+
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CHhhcccCCCCCEEeCCCCCccccCC
Confidence 88889999999999999999987655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-52 Score=497.39 Aligned_cols=448 Identities=19% Similarity=0.133 Sum_probs=332.9
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCcc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCC
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 346 (956)
++|++++|.+++..+..++++++|++|++++|.+++ +|..+.++++|++|++++|.+++..+..+..+..-. ..+.
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--~~l~ 184 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP--QVNL 184 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT--TCCC
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc--cccc
Confidence 333334444444444556777888888888888875 678888888888888888888877666665554000 0145
Q ss_pred EEEccCCcCcccCCCCCCCCCCCEEEeeccccc-cccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCC
Q 046848 347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLN-GTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425 (956)
Q Consensus 347 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 425 (956)
+|++++|.+++..+......+|++|++++|.+. +..|..++.++.|+.+++..+.+.+... +.
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~------- 248 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LE------- 248 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CS-------
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc---------cc-------
Confidence 788888888877766444558889999988886 4566778888888888876555432210 00
Q ss_pred cccccccCCcCCC--CCcceEEc-CCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccc
Q 046848 426 SLTLEFSHDWIPP--FQLSQVNL-GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG 502 (956)
Q Consensus 426 ~l~~~~~~~~~~~--~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 502 (956)
......+..+ ..++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +| . ...+++|++|++++|.+ +
T Consensus 249 ---~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~-l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 249 ---IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-D-VPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp ---CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-C-CCTTCCCSEEEEESCCC-S
T ss_pred ---ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-h-ccccccCCEEEcccccC-c
Confidence 0000011111 13555565 55556666665 7777888888888887753 33 2 23345677777776666 3
Q ss_pred cCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCC
Q 046848 503 KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF 582 (956)
Q Consensus 503 ~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 582 (956)
.+|.. . .++|+.|++++|...+.+ .+..+
T Consensus 321 ~lp~~--~-----------------------------------------------l~~L~~L~l~~n~~~~~~--~~~~l 349 (606)
T 3vq2_A 321 QFPTL--D-----------------------------------------------LPFLKSLTLTMNKGSISF--KKVAL 349 (606)
T ss_dssp SCCCC--C-----------------------------------------------CSSCCEEEEESCSSCEEC--CCCCC
T ss_pred ccccC--C-----------------------------------------------CCccceeeccCCcCccch--hhccC
Confidence 44421 0 156777788777555433 56678
Q ss_pred CCCCEEEcCCCccccc--CCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcE
Q 046848 583 DSLAILNLANNSFFGK--IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVV 660 (956)
Q Consensus 583 ~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~ 660 (956)
++|++|++++|++++. +|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|...+..+++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 8899999999988865 47788888999999999999885 56788889999999999999987666333447899999
Q ss_pred EEccCCcccccCCccccCCCCcCEEeccCCcCCC-CcChhccccccCcccccCcccccccccccccccccccccccccce
Q 046848 661 LSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG-IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739 (956)
Q Consensus 661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (956)
|++++|++.+..|..+..+++|++|++++|++++ .+|..+..+++|
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------------------------------- 475 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------------------------------- 475 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------------------
Confidence 9999999998888899999999999999999987 467777776666
Q ss_pred eEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC
Q 046848 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI 819 (956)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 819 (956)
+.|+|++|++++..|..+..+++|+.|+|++|++++.+|..++.+++|+.|||++|+++ .+
T Consensus 476 ------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 536 (606)
T 3vq2_A 476 ------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TS 536 (606)
T ss_dssp ------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CE
T ss_pred ------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-cc
Confidence 88999999999999999999999999999999999999999999999999999999999 67
Q ss_pred cccccCCC-CCCeEECcCCcceecCCCC
Q 046848 820 PSSLSQLS-RLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 820 p~~l~~l~-~L~~L~ls~N~l~g~ip~~ 846 (956)
|..+..++ +|++|++++|++.|.+|..
T Consensus 537 p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CHhHhhhcccCcEEEccCCCcccCCccH
Confidence 77798887 5999999999999998753
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-53 Score=505.49 Aligned_cols=272 Identities=19% Similarity=0.206 Sum_probs=176.0
Q ss_pred CCHHHHHHHHHHHccCCCCCC--------CCCCCCCCCCCCCCccc---cceeecCCCCcEEEEECCCCCCCCCCCCccc
Q 046848 36 CIDEEREALLAFKQGLVDESG--------ILSSWGREDEKRDCCGW---RGVNCSNRTGHVYKLDLHILQVFPSPCLKGT 104 (956)
Q Consensus 36 ~~~~~~~~ll~~k~~~~~~~~--------~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~ 104 (956)
....|+.||.++++++.++.. ...+|. .+++||.| .||+|+.. |||+.|+|++ ..+.|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~------~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG------FGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT------SCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC------cccCCc
Confidence 346799999999999864422 234797 46899999 99999754 8999999998 789999
Q ss_pred cccccccccCCCEEeCCCCCCC------C-----CCCCccccCCCCCCEEecCCCCCCCCCCccCCCC-CCCcEEECCCC
Q 046848 105 ISSSLLILQHLTYLDLSGNNFS------G-----SSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNL-SRLQVLDIGFN 172 (956)
Q Consensus 105 l~~~l~~l~~L~~L~Ls~n~~~------~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L-~~L~~L~Ls~n 172 (956)
+|++++++++|++|||++|.+. + ..+|... +.+|+ ++++++.+.+.+|..++.+ ..+..+++...
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 9999999999999999999762 1 0144433 45667 7777777777666655421 12222222211
Q ss_pred CCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEc--CCC
Q 046848 173 SLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVI--LGN 250 (956)
Q Consensus 173 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L--~~n 250 (956)
.+ ... .. ..++.+.+ ..|
T Consensus 174 ~~-------------------------~~~--------~~---------------------------~~l~~l~l~~~~n 193 (636)
T 4eco_A 174 SI-------------------------KKS--------SR---------------------------ITLKDTQIGQLSN 193 (636)
T ss_dssp CC-------------------------CCC--------CC---------------------------CCCCTTTTTCCSC
T ss_pred cc-------------------------ccc--------cc---------------------------cchhhhhhccccC
Confidence 11 000 00 01111111 234
Q ss_pred cCCCCcchhhHhhcccccceEEecccccccC-----------------CCcccC--CCCCCcEEECCCCcCcc-cccccc
Q 046848 251 NLTDSIYPWLFNVSSNLVELINLGSNQLQGS-----------------IPEAFG--HMPSLNTLFLASNQFRE-IPKSLG 310 (956)
Q Consensus 251 ~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~-ip~~l~ 310 (956)
++++ +|..+++++. | ++|++++|.+++. +|+.++ ++++|++|++++|.+.+ +|..+.
T Consensus 194 ~l~~-ip~~l~~l~~-L-~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 194 NITF-VSKAVMRLTK-L-RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp EEEE-ECGGGGGCTT-C-CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCcc-CCHHHhcccC-C-CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 5555 6666666666 6 7777777777764 777777 77788888888877766 777777
Q ss_pred CCCCCCEEEccCCC-CCC-cchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccch--hh
Q 046848 311 NMCNLKSLTLSYNT-LRG-DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINK--SV 386 (956)
Q Consensus 311 ~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~l 386 (956)
++++|++|++++|. +++ .+|..++.+.. +..+++|++|++++|.++ .+|. .+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~-----------------------~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALAD-----------------------APVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHH-----------------------SGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhc-----------------------cccCCCCCEEECCCCcCC-ccCchhhh
Confidence 77888888888877 776 67777766510 112344555555555555 4555 56
Q ss_pred cCCCCCCEEECcCccCccccC
Q 046848 387 GQLVKLESLFLHNNSLRGVIS 407 (956)
Q Consensus 387 ~~l~~L~~L~L~~n~l~~~~~ 407 (956)
+.+++|++|++++|+++|.+|
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC
T ss_pred ccCCCCCEEeCcCCcCccchh
Confidence 666666666666666665544
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.6e-50 Score=480.83 Aligned_cols=526 Identities=21% Similarity=0.190 Sum_probs=358.8
Q ss_pred cccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccC
Q 046848 105 ISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLS 184 (956)
Q Consensus 105 l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~ 184 (956)
+|..+. ++|++|+|++|.+++. .+..+.++++|++|+|++|.+++..|.+|+++++|++|++++|.+ ....+..++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~ 101 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSFSPGSFS 101 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CCCCTTSST
T ss_pred CCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-cccChhhcC
Confidence 444433 7889999999999864 555888999999999999999887888899999999999999987 445567788
Q ss_pred CCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhc
Q 046848 185 HLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVS 264 (956)
Q Consensus 185 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 264 (956)
++++|++|++++|.+++.+. ..++++++|++|++++|.+.+. .+|..+.+++
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~--------------------------~lp~~~~~l~ 153 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSC--------------------------KLPAYFSNLT 153 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGTCT
T ss_pred CcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccce--------------------------echHhHhhcC
Confidence 88888888888888877542 2355666666666666655431 2333344443
Q ss_pred ccccceEEecccccccCCCcccCCCCCC----cEEECCCCcCccccccccCCCCCCEEEccCCCCC-CcchHHHhhcCCC
Q 046848 265 SNLVELINLGSNQLQGSIPEAFGHMPSL----NTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLR-GDLSEIIQNLSDG 339 (956)
Q Consensus 265 ~~L~~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~~ 339 (956)
+ | ++|++++|.+++..+..++.+++| ++|++++|.++++|.......+|++|++++|.++ +..|..+..++
T Consensus 154 ~-L-~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-- 229 (606)
T 3vq2_A 154 N-L-VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA-- 229 (606)
T ss_dssp T-C-CEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTT--
T ss_pred C-C-CEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccc--
Confidence 3 4 444444444444444444433333 3566666666665544444446666777666665 33455556555
Q ss_pred CccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEEC-cCccCccccCHHhhhCCCCCC
Q 046848 340 CTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFL-HNNSLRGVISEAFLSNLSNLT 418 (956)
Q Consensus 340 ~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~~~~~l~~L~ 418 (956)
.|+.+++..+.+.+... +.. +....+..+..+ .++.+++ ..|.+.+.++. +..+++|+
T Consensus 230 ----~L~~l~l~~~~~~~~~~-------l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~ 288 (606)
T 3vq2_A 230 ----GLHVHRLILGEFKDERN-------LEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVS 288 (606)
T ss_dssp ----TCEEEEEEEECCTTSCC-------CSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCS
T ss_pred ----ccccccccccccccCCc-------ccc-------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCC
Confidence 56665555443332110 000 000111111111 2333444 33344444333 34444444
Q ss_pred EEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccc
Q 046848 419 ILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNN 498 (956)
Q Consensus 419 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n 498 (956)
.|++++|.+.. +| ++..+++|++|++++|.+ +.+|.. .+++|++|++++|
T Consensus 289 ~L~l~~~~~~~-------------------------l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n 338 (606)
T 3vq2_A 289 AMSLAGVSIKY-------------------------LE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEESCCCCC-------------------------CC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESC
T ss_pred EEEecCccchh-------------------------hh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCC
Confidence 44444444332 11 233334444444444444 344422 3445555555555
Q ss_pred cccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCC--CC
Q 046848 499 QIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGR--LP 576 (956)
Q Consensus 499 ~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p 576 (956)
+..+.++.. ..++|++|++++|.+++. +|
T Consensus 339 ~~~~~~~~~-------------------------------------------------~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 339 KGSISFKKV-------------------------------------------------ALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp SSCEECCCC-------------------------------------------------CCTTCCEEECCSSCEEEEEECC
T ss_pred cCccchhhc-------------------------------------------------cCCCCCEEECcCCccCCCcchh
Confidence 332211000 005778888888887765 47
Q ss_pred ccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCC-ccccCCCCCcEEecCCccccccCChhHhhcC
Q 046848 577 DCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGL 655 (956)
Q Consensus 577 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l 655 (956)
..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++++..| ..+..+++|++|++++|++.+.+|..+. ++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l 447 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GL 447 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TC
T ss_pred hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CC
Confidence 788899999999999999885 56888999999999999999998877 6889999999999999999977787776 79
Q ss_pred ccCcEEEccCCcccc-cCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccc
Q 046848 656 VNLVVLSLKSNKFNG-SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKS 734 (956)
Q Consensus 656 ~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (956)
++|++|++++|++.+ .+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------- 499 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL---------------------------- 499 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC----------------------------
Confidence 999999999999987 478889999999999999999999888888877766
Q ss_pred cccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC-CCCEEECCCC
Q 046848 735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK-SLDFLDLSRN 813 (956)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N 813 (956)
++|+|++|++++.+|..+.++++|+.|+|++|+++ .+|..+..++ +|++|++++|
T Consensus 500 -----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 500 -----------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp -----------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred -----------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 89999999999999999999999999999999999 6888899997 6999999999
Q ss_pred ccCcCCc
Q 046848 814 QFFGSIP 820 (956)
Q Consensus 814 ~l~~~ip 820 (956)
++.+..+
T Consensus 556 ~~~c~c~ 562 (606)
T 3vq2_A 556 SVACICE 562 (606)
T ss_dssp CCCCSST
T ss_pred CcccCCc
Confidence 9987655
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-49 Score=487.65 Aligned_cols=523 Identities=23% Similarity=0.214 Sum_probs=393.8
Q ss_pred EEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-c-cccccCCCCCCEEEcc
Q 046848 244 VIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-I-PKSLGNMCNLKSLTLS 321 (956)
Q Consensus 244 ~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-i-p~~l~~l~~L~~L~Ls 321 (956)
..+.++++++. +|. ....+ +.|+|++|.+++..|..|.++++|++|++++|.... + |..|.++++|++|+|+
T Consensus 8 ~~dcs~~~L~~-vP~----lp~~l-~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ----VLNTT-ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSC-CCS----SCTTC-CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCCC-CCC----CCCCc-CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 44455555543 343 22226 888888888888888888888888888888885544 5 6778888888888888
Q ss_pred CCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC---CCCCCCCCEEEeeccccccccc-hhhcCCCCCCEEEC
Q 046848 322 YNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN---FGGFSSLKRLSIANNRLNGTIN-KSVGQLVKLESLFL 397 (956)
Q Consensus 322 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L 397 (956)
+|.+++..|..+..++ +|++|+|++|.+++..+. +..+++|++|++++|.+++..+ ..++++++|++|++
T Consensus 82 ~N~l~~~~p~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLF------HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp TCCCCEECTTSSCSCS------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CCcCcccCHhHccCCc------ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 8888887788888877 888888888888875443 7888888888888888877654 56888888888888
Q ss_pred cCccCccccCHHhhhCC--CCCCEEEcCCCcccccccCCcCCCCC------cceEEcCCCCCCCCCchhhhcc---ccee
Q 046848 398 HNNSLRGVISEAFLSNL--SNLTILYLADNSLTLEFSHDWIPPFQ------LSQVNLGSCKIGPRFPKWLRNQ---NQIL 466 (956)
Q Consensus 398 ~~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~ 466 (956)
++|.+++..+.. +..+ ++|+.|+++.|.+.+..+..+..+.+ |+.|++++|.+.+..+..+... ..++
T Consensus 156 s~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 156 SSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp ESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CCCcCCeeCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 888888777664 4545 78888888888888776666555443 7888888887777666665543 5677
Q ss_pred EEEeeCCCC---------CCCccchhhhc-cCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCC
Q 046848 467 SLDISNSGI---------SDTVPNWFWNQ-TYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNA 536 (956)
Q Consensus 467 ~L~Ls~n~i---------~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l 536 (956)
.++++.+.+ .+..+..+... .++|+.|++++|.+.+..|..+..+ .++
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l----------------------~~L 292 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL----------------------KDL 292 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC----------------------CCC
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC----------------------CCC
Confidence 777763322 22222222221 2467777777776665555444333 345
Q ss_pred ceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccC
Q 046848 537 SFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYN 616 (956)
Q Consensus 537 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 616 (956)
+.|++++|++.+..+..... .++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 293 ~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 293 KVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 55555555555544322111 17899999999999988888999999999999999999888888899999999999999
Q ss_pred ceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccC-CccccCCCCcCEEeccCCcCCCC
Q 046848 617 NRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI-PLQLCHLANVQILDLSSNNISGI 695 (956)
Q Consensus 617 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ 695 (956)
|.+++. + .+++|+.|++++|+++ .+|.. ..+++.|++++|++.+.. +..+..+++|+.|+|++|++++.
T Consensus 372 N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 372 NALTTI-H----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp CCSCCC-S----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCcc-c----CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence 998842 2 3788999999999998 77763 567899999999998642 23466889999999999999865
Q ss_pred cChh-ccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCC-----C
Q 046848 696 IPKC-FNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLG-----G 769 (956)
Q Consensus 696 ~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~ 769 (956)
.+.. +..+ ++|+.|+|++|.++ +
T Consensus 442 ~~~~~~~~~---------------------------------------------------~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 442 SGDQTPSEN---------------------------------------------------PSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CSSSSSCSC---------------------------------------------------TTCCBCEEESCCCSSSCCSC
T ss_pred ccccccccC---------------------------------------------------CccccccCCCCccccccccc
Confidence 4431 2222 34588999999997 4
Q ss_pred CCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcC
Q 046848 770 EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQL 849 (956)
Q Consensus 770 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 849 (956)
..|..|..+++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..|..+. ++|+.||+++|++++.+|.. +
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~ 546 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--F 546 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--C
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--h
Confidence 5567789999999999999999999999999999999999999999988887776 88999999999999999864 5
Q ss_pred CccccccccCC-CCCCCCC
Q 046848 850 QSFSTSMYAGN-ELCGLPL 867 (956)
Q Consensus 850 ~~~~~~~~~~n-~l~~~~~ 867 (956)
..+....+.+| ..|..+.
T Consensus 547 ~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 547 VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp SSCCEEEEEEECCCCSSSC
T ss_pred CCcCEEEecCCCccccccc
Confidence 56777778889 6676554
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-48 Score=472.76 Aligned_cols=518 Identities=18% Similarity=0.222 Sum_probs=336.3
Q ss_pred cCCCHHHHHHHHHHHccCCCCCCCCCCCCCCC--CCCCC--ccc------------cceeecCCCCcEEEEECCCCCCCC
Q 046848 34 IRCIDEEREALLAFKQGLVDESGILSSWGRED--EKRDC--CGW------------RGVNCSNRTGHVYKLDLHILQVFP 97 (956)
Q Consensus 34 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~ 97 (956)
..+..+|++||++||+++.+| +|.... ...+| |.| .||.|+. .+||+.|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 346688999999999999776 786311 01345 999 9999986 69999999999
Q ss_pred CCCCccccccccccccCCCEEeC-CCCCCCCCCCCccccCC----C-----CCCE------Eec-CCCCCC---------
Q 046848 98 SPCLKGTISSSLLILQHLTYLDL-SGNNFSGSSIPEFIGSL----S-----KLSY------LGL-SNTEFA--------- 151 (956)
Q Consensus 98 ~~~l~g~l~~~l~~l~~L~~L~L-s~n~~~~~~~p~~l~~l----~-----~L~~------L~L-s~n~l~--------- 151 (956)
..+.|.+|+++++|++|++||| ++|.++|. .|-..... . .++. ++. ....+.
T Consensus 333 -~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 333 -FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp -TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred -CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 7899999999999999999999 88877654 22110000 0 0000 000 000000
Q ss_pred --CCCCccCCCCCCCcEEECCC--CCCCCCCCccccCCCCCCcEEecccccCCCC---------------chhHHhhc--
Q 046848 152 --GPIPLQLGNLSRLQVLDIGF--NSLISGENLEWLSHLSSLIYLDLSFSNLSKF---------------SNWMQVLS-- 210 (956)
Q Consensus 152 --~~~p~~l~~L~~L~~L~Ls~--n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~---------------~~~~~~l~-- 210 (956)
...+........++.+.++. |.+. ..|..++++++|++|++++|.+++. ..+|..++
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~--~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRIT--FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEE--EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred CccccccccccccchhhceeccccCccc--chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 00000111111222222222 2221 1344455555555555555555440 02455666
Q ss_pred CCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCc-CCC-CcchhhHhhc-------ccccceEEecccccccC
Q 046848 211 KLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNN-LTD-SIYPWLFNVS-------SNLVELINLGSNQLQGS 281 (956)
Q Consensus 211 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~~~-------~~L~~~L~Ls~n~l~~~ 281 (956)
++++|++|++++|.+.+.+| ..+.+. ++|+.|++++|+ +++ .+|..++.+. . | +.|++++|.++ .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP--~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L-~~L~Ls~N~L~-~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLP--DFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-I-QIFYMGYNNLE-E 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCC--GGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-C-CEEECCSSCCC-B
T ss_pred cCCCCCEEECcCCCCCccCh--HHHhCC-CCCCEEECcCCCCcccccchHHHHhhhhcccccCC-c-cEEEeeCCcCC-c
Confidence 88888888888888888888 566665 899999999998 888 8998888877 6 8 99999999999 7
Q ss_pred CCc--ccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCC-CCEEEccCCcCccc
Q 046848 282 IPE--AFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTS-LAWLFLDSNEITGS 358 (956)
Q Consensus 282 ~p~--~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~-L~~L~Ls~n~l~~~ 358 (956)
+|. .++++++|++|++++|.++.+| .+..+++|+.|+|++|.++ .+|..+..++ + |+.|++++|.++..
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~------~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT------DQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC------TTCCEEECCSSCCCSC
T ss_pred cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhcc------ccCCEEECcCCCCCcC
Confidence 888 8999999999999999999998 8999999999999999998 7777788777 7 99999999999844
Q ss_pred CCCCCCCC--CCCEEEeeccccccccchh---hc--CCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccc
Q 046848 359 LPNFGGFS--SLKRLSIANNRLNGTINKS---VG--QLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEF 431 (956)
Q Consensus 359 ~~~~~~l~--~L~~L~Ls~n~l~~~~~~~---l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 431 (956)
+..+..++ +|+.|++++|.+.+.+|.. +. .+++|+.|++++|+++ .+|...+..+++|+.|+|++|.++...
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccC
Confidence 33355554 4999999999998766532 22 3458999999999998 456666778999999999999887333
Q ss_pred cCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhh-hccCCcceEecccccccccCCCCCCC
Q 046848 432 SHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFW-NQTYNLSFFNLSNNQIKGKLPNLSSR 510 (956)
Q Consensus 432 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~ 510 (956)
...+.... ..+.++++|+.|++++|+++ .+|..+. ..+++|+.|+|++|++++ +|..+..
T Consensus 714 ~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~ 774 (876)
T 4ecn_A 714 ENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN 774 (876)
T ss_dssp TTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred hHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc
Confidence 22221111 11223456777777777776 4555443 233344444444444332 2211000
Q ss_pred CcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEc
Q 046848 511 FHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNL 590 (956)
Q Consensus 511 ~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 590 (956)
. ++|+.|++++|. ++
T Consensus 775 ---------------------------------------------L--~~L~~L~Ls~N~------------------~l 789 (876)
T 4ecn_A 775 ---------------------------------------------S--SQLKAFGIRHQR------------------DA 789 (876)
T ss_dssp ---------------------------------------------C--TTCCEEECCCCB------------------CT
T ss_pred ---------------------------------------------C--CCCCEEECCCCC------------------Cc
Confidence 0 334444443332 22
Q ss_pred CCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCccc
Q 046848 591 ANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFN 669 (956)
Q Consensus 591 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~ 669 (956)
++|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-+..+. ....+..+.|.+|+..
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~-~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVC-PYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGH-HHHHTTCCEEECCTTS
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcc-ccccchheeecCCCcc
Confidence 34666666676676777777777777777 46666554 4677777777776622222222 2334555666666654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-47 Score=450.82 Aligned_cols=421 Identities=21% Similarity=0.224 Sum_probs=287.3
Q ss_pred eEEecccccccCCCcccCCCCCCcEEECCCCcCcc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCC--
Q 046848 270 LINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSL-- 345 (956)
Q Consensus 270 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L-- 345 (956)
+|++++|.+++..+..++.+++|++|++++|.+++ +|..+.++++|++|++++|.+++..+..+..+. +|
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~ 177 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------QMPL 177 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH------TCTT
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh------ccch
Confidence 33333333333333357788999999999999987 688999999999999999999988888787776 67
Q ss_pred --CEEEccCCcCcccCCCCCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEc
Q 046848 346 --AWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYL 422 (956)
Q Consensus 346 --~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 422 (956)
+.+++++|.+++..+......+|++|++++|.... .++..+..++.++.+.+....+... .+++ .+
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~---------~~l~--~~ 246 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---------GNLE--KF 246 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC---------SSCE--EC
T ss_pred hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCc---------hhhh--hc
Confidence 78888888888777663333478888888875432 3445566666666655543322210 0111 00
Q ss_pred CCCcccccccCCcCCCC--CcceEEcCCC-CCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEeccccc
Q 046848 423 ADNSLTLEFSHDWIPPF--QLSQVNLGSC-KIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQ 499 (956)
Q Consensus 423 s~n~l~~~~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~ 499 (956)
.. ..+..+. .++.+++.++ .+.+..+..+..++ +|++|++++|.
T Consensus 247 ~~--------~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-------------------------~L~~L~l~~~~ 293 (570)
T 2z63_A 247 DK--------SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-------------------------NVSSFSLVSVT 293 (570)
T ss_dssp CT--------TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-------------------------TCSEEEEESCE
T ss_pred ch--------hhhccccccchhhhhhhcchhhhhhchhhhcCcC-------------------------cccEEEecCcc
Confidence 00 1111111 1233333333 23333344444444 44444444444
Q ss_pred ccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccc
Q 046848 500 IKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW 579 (956)
Q Consensus 500 l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 579 (956)
++ .+|..+.. .+|+.|++++|.+. .+|.
T Consensus 294 l~-~l~~~~~~------------------------------------------------~~L~~L~l~~n~~~-~l~~-- 321 (570)
T 2z63_A 294 IE-RVKDFSYN------------------------------------------------FGWQHLELVNCKFG-QFPT-- 321 (570)
T ss_dssp EC-SCCBCCSC------------------------------------------------CCCSEEEEESCBCS-SCCB--
T ss_pred ch-hhhhhhcc------------------------------------------------CCccEEeeccCccc-ccCc--
Confidence 43 12211100 13555555555555 3343
Q ss_pred cCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeC--CccccCCCCCcEEecCCccccccCChhHhhcCcc
Q 046848 580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGEL--PSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVN 657 (956)
Q Consensus 580 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 657 (956)
..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+. .+|..+. .+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~ 397 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQ 397 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTT
T ss_pred ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccccc-ccCC
Confidence 3556677777777776655544 56677777777777776543 566777777777777777777 4444443 6778
Q ss_pred CcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccc
Q 046848 658 LVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYF 736 (956)
Q Consensus 658 L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (956)
|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------ 447 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------------------------ 447 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC------------------------------
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC------------------------------
Confidence 8888888888776655 457788888888888888887777777666655
Q ss_pred cceeEEecCccceecccccceeEEEcCCCCCC-CCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCcc
Q 046848 737 DKAVLTWKGSQYEYQSTLGLVKILDLSSNKLG-GEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQF 815 (956)
Q Consensus 737 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 815 (956)
++|+|++|+++ +.+|..+..+++|++|+|++|++++..|..++.+++|++|++++|++
T Consensus 448 ---------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 448 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 78888888887 57888899999999999999999998899999999999999999999
Q ss_pred CcCCcccccCCCCCCeEECcCCcceecCCCCC
Q 046848 816 FGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT 847 (956)
Q Consensus 816 ~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 847 (956)
++.+|..+..+++|+.|++++|+++|.+|...
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 99999999999999999999999999998753
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=437.32 Aligned_cols=497 Identities=22% Similarity=0.224 Sum_probs=312.3
Q ss_pred cCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEE
Q 046848 113 QHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYL 192 (956)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 192 (956)
+++++||+++|.+++. .+..+.++++|++|+|++|++++..|..|+++++|++|++++|.+ ....+..++++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC-CccCHhhhcCccccccc
Confidence 4789999999999854 456788999999999999999877788899999999999999986 33444678888888888
Q ss_pred ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEE
Q 046848 193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELIN 272 (956)
Q Consensus 193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~ 272 (956)
++++|.+++++.. .++++++|++|++++|.+.+. .+|..+.++++ | +.|+
T Consensus 106 ~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~--------------------------~lp~~~~~l~~-L-~~L~ 155 (570)
T 2z63_A 106 VAVETNLASLENF--PIGHLKTLKELNVAHNLIQSF--------------------------KLPEYFSNLTN-L-EHLD 155 (570)
T ss_dssp ECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGGCTT-C-CEEE
T ss_pred cccccccccCCCc--cccccccccEEecCCCcccee--------------------------cChhhhcccCC-C-CEEe
Confidence 8888888775431 255555555555555554431 23444444444 4 5555
Q ss_pred ecccccccCCCcccCCCCCC----cEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCC-cchHHHhhcCCCCccCCCC
Q 046848 273 LGSNQLQGSIPEAFGHMPSL----NTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRG-DLSEIIQNLSDGCTKTSLA 346 (956)
Q Consensus 273 Ls~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~ 346 (956)
+++|.+++..+..++.+++| +.|++++|.++.++ ..+.. .+|+.|++++|.... .++..+..+. .++
T Consensus 156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~------~l~ 228 (570)
T 2z63_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLA------GLE 228 (570)
T ss_dssp CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTT------TCE
T ss_pred CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCcc------ccc
Confidence 55555555555555555555 66777777776643 33333 367777777664432 2444555554 555
Q ss_pred EEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCC--CCCEEECcCc-cCccccCHHhhhCCCCCCEEEcC
Q 046848 347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLV--KLESLFLHNN-SLRGVISEAFLSNLSNLTILYLA 423 (956)
Q Consensus 347 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls 423 (956)
.+.+....+... ..++. +.. ..+..++ .++.++++++ .+.+..+. .+..+++|++|+++
T Consensus 229 ~~~l~~~~~~~~-------~~l~~--~~~--------~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 229 VHRLVLGEFRNE-------GNLEK--FDK--------SALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLV 290 (570)
T ss_dssp EEEEEEEECCCC-------SSCEE--CCT--------TTTGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEE
T ss_pred eeeeccccccCc-------hhhhh--cch--------hhhccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEec
Confidence 544433222110 01110 000 0111111 1233444444 33333333 23444444444444
Q ss_pred CCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEeccccccccc
Q 046848 424 DNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGK 503 (956)
Q Consensus 424 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 503 (956)
+|.++ .+|.++..+ +|++|++++|.+. .+|.. .+
T Consensus 291 ~~~l~-------------------------~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l---------------- 324 (570)
T 2z63_A 291 SVTIE-------------------------RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KL---------------- 324 (570)
T ss_dssp SCEEC-------------------------SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BC----------------
T ss_pred Cccch-------------------------hhhhhhccC-CccEEeeccCccc-ccCcc---cc----------------
Confidence 44433 123333333 4555555555444 22221 12
Q ss_pred CCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCC
Q 046848 504 LPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFD 583 (956)
Q Consensus 504 ~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 583 (956)
++|+.|++++|.+.+..+. ..++
T Consensus 325 -------------------------------------------------------~~L~~L~l~~n~~~~~~~~--~~~~ 347 (570)
T 2z63_A 325 -------------------------------------------------------KSLKRLTFTSNKGGNAFSE--VDLP 347 (570)
T ss_dssp -------------------------------------------------------SSCCEEEEESCBSCCBCCC--CBCT
T ss_pred -------------------------------------------------------cccCEEeCcCCcccccccc--ccCC
Confidence 2344444444444433332 4455
Q ss_pred CCCEEEcCCCcccccC--CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEE
Q 046848 584 SLAILNLANNSFFGKI--PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVL 661 (956)
Q Consensus 584 ~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 661 (956)
+|++|++++|++++.. |..+..+++|++|++++|++++..+. +..+++|+.|++++|.+.+..|...+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 6666666666665433 45566677777777777777754444 77777777777777777755553334467788888
Q ss_pred EccCCcccccCCccccCCCCcCEEeccCCcCC-CCcChhccccccCcccccCccccccccccccccccccccccccccee
Q 046848 662 SLKSNKFNGSIPLQLCHLANVQILDLSSNNIS-GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAV 740 (956)
Q Consensus 662 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (956)
++++|++.+..|..+..+++|+.|++++|.++ +.+|..+..+++|
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L---------------------------------- 472 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------------------------------- 472 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------------------------------
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC----------------------------------
Confidence 88888888777778888888888888888887 5677666666555
Q ss_pred EEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848 741 LTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 741 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
++|+|++|++++..|..+..+++|+.|+|++|++++..|..++++++|+.|++++|++++..|
T Consensus 473 -----------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 473 -----------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp -----------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -----------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 788888888888888889999999999999999998888889999999999999999998876
Q ss_pred c
Q 046848 821 S 821 (956)
Q Consensus 821 ~ 821 (956)
.
T Consensus 536 ~ 536 (570)
T 2z63_A 536 R 536 (570)
T ss_dssp T
T ss_pred c
Confidence 4
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.9e-45 Score=435.46 Aligned_cols=497 Identities=23% Similarity=0.261 Sum_probs=313.9
Q ss_pred CccccceeecCCCCcEEEEECCCCCCCCCCCCccccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCC
Q 046848 70 CCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTE 149 (956)
Q Consensus 70 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~ 149 (956)
.|.|.|+ |+... ..++ .+|+.+. ++|++|+|++|.+++. .|..++++++|++|++++|+
T Consensus 3 ~C~~~~~-c~~~~----------------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~ 61 (549)
T 2z81_A 3 SCDASGV-CDGRS----------------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSR 61 (549)
T ss_dssp EECTTSE-EECTT----------------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSC
T ss_pred cCCCCce-EECCC----------------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCC
Confidence 5999998 86432 1222 3555443 7899999999999865 57789999999999999999
Q ss_pred CCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCC
Q 046848 150 FAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTI 229 (956)
Q Consensus 150 l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 229 (956)
+++..|..|+++++|++|++++|.+ ....+..++++++|++|++++|.+++.+. +..++++
T Consensus 62 i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l----------------- 122 (549)
T 2z81_A 62 INTIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNL----------------- 122 (549)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTC-----------------
T ss_pred cCccChhhccccccCCEEECCCCcc-CccCHHHhccCCCCcEEECCCCcccccch-hhhhhcc-----------------
Confidence 9988888999999999999999987 33344446777777777777776654310 1122223
Q ss_pred CCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcc-cccc
Q 046848 230 PSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFRE-IPKS 308 (956)
Q Consensus 230 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-ip~~ 308 (956)
++|++|++++|.+.+.+| +..+..+++|++|++++|.+++ +|..
T Consensus 123 ----------~~L~~L~L~~n~~~~~~~-------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 123 ----------TNLQTLRIGNVETFSEIR-------------------------RIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp ----------TTCCEEEEEESSSCCEEC-------------------------TTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ----------CCccEEECCCCccccccC-------------------------HhhhhcccccCeeeccCCcccccChhh
Confidence 333333333333222221 2344555555555555555555 4555
Q ss_pred ccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccC----CCCCCCCCCCEEEeeccccccccch
Q 046848 309 LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL----PNFGGFSSLKRLSIANNRLNGTINK 384 (956)
Q Consensus 309 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~ 384 (956)
+..+++|++|++++|.+.......+..++ +|++|++++|.+++.. +....+++|+.|++++|.+++..+.
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILS------SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTT------TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred hhccccCceEecccCcccccchhhHhhcc------cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 55556666666666555432222223344 6666666666665531 1234567788888888877665443
Q ss_pred h----hcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhh
Q 046848 385 S----VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLR 460 (956)
Q Consensus 385 ~----l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 460 (956)
. +..+++|+.+++++|.+.+.... +. .....+.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~------~~-------------------------------------~~~~~~~ 278 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDF------NP-------------------------------------SESDVVS 278 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCC------CC-------------------------------------CTTTCCC
T ss_pred HHHHHhhhhccccccccccccccccccc------cc-------------------------------------cchhhhh
Confidence 3 34455666666666655543210 00 0001122
Q ss_pred cccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceee
Q 046848 461 NQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLN 540 (956)
Q Consensus 461 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~ 540 (956)
.+++++.|++.++.+...... . .+ .
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~---~---~l-----~-------------------------------------------- 303 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLF---Y---DL-----S-------------------------------------------- 303 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGS---C---CC-----C--------------------------------------------
T ss_pred hhcccccccccccccchhhhc---c---cc-----h--------------------------------------------
Confidence 344555566666554321000 0 00 0
Q ss_pred CCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccc-cCCCCCCEEEcCCCcccccCC---CCcCCCCCcCEEEccC
Q 046848 541 LSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW-SQFDSLAILNLANNSFFGKIP---DSIGFLKNLQSLSLYN 616 (956)
Q Consensus 541 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~ 616 (956)
.... ...+|+.|++++|.++ .+|..+ ..+++|++|++++|++.+.+| ..++.+++|++|++++
T Consensus 304 -----------~~~~-~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 304 -----------TVYS-LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370 (549)
T ss_dssp -----------HHHH-HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred -----------hhhh-hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence 0000 0045666666666665 455444 457777777777777776553 3466677777777777
Q ss_pred ceeeeeCC--ccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCC
Q 046848 617 NRLTGELP--SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG 694 (956)
Q Consensus 617 N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 694 (956)
|++++..+ ..+..+++|++|++++|+++ .+|..+. .+++|++|++++|+++ .+|..+ .++|++|++++|++++
T Consensus 371 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDS 445 (549)
T ss_dssp SCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSC
T ss_pred CcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhh
Confidence 77775432 45777777888888888777 6777665 5777888888888876 344333 2578888888888876
Q ss_pred CcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchh
Q 046848 695 IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEE 774 (956)
Q Consensus 695 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 774 (956)
.+ ..++. |++|||++|+++ .+|.
T Consensus 446 ~~----~~l~~---------------------------------------------------L~~L~Ls~N~l~-~ip~- 468 (549)
T 2z81_A 446 FS----LFLPR---------------------------------------------------LQELYISRNKLK-TLPD- 468 (549)
T ss_dssp CC----CCCTT---------------------------------------------------CCEEECCSSCCS-SCCC-
T ss_pred hc----ccCCh---------------------------------------------------hcEEECCCCccC-cCCC-
Confidence 43 23333 388999999998 6665
Q ss_pred hhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCc
Q 046848 775 IMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 775 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
...+++|++|+|++|++++.+|..++.+++|+.|++++|++++..|
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4678999999999999999888889999999999999999998877
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.8e-46 Score=437.86 Aligned_cols=485 Identities=21% Similarity=0.229 Sum_probs=324.5
Q ss_pred EEecccccccCCCcccCCCCCCcEEECCCCcCccc-cccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEE
Q 046848 271 INLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLF 349 (956)
Q Consensus 271 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~ 349 (956)
.+.+++.++ .+|..+. ++|++|++++|.++++ |..|.++++|++|++++|.+++..|..+..++ +|++|+
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------~L~~L~ 80 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG------SLEHLD 80 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT------TCCEEE
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc------cCCEEE
Confidence 455555555 3444332 5677777777777663 45666777777777777776666666666665 666666
Q ss_pred ccCCcCcccCCC-CCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcc
Q 046848 350 LDSNEITGSLPN-FGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSL 427 (956)
Q Consensus 350 Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 427 (956)
+++|.+++..+. ++.+++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.++...+..+++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 666666655554 6666666666666666654 23455666666666666666643344333356666666666666666
Q ss_pred cccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCc--cchhhhccCCcceEecccccccccCC
Q 046848 428 TLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTV--PNWFWNQTYNLSFFNLSNNQIKGKLP 505 (956)
Q Consensus 428 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~p 505 (956)
++..+..+..+.+|++|++++|.+.......+..+++|++|++++|++++.. +..+....++|+.|++++|.+++..+
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 6655555555666666666666554322222334566666666666655432 22223334456666666655554322
Q ss_pred CCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchh-----hhccCCceeEEECCCCCCCCC-----C
Q 046848 506 NLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFL-----CSITGHKLDYIDLSNNLLSGR-----L 575 (956)
Q Consensus 506 ~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~-----~~~~~~~L~~L~Ls~n~l~~~-----~ 575 (956)
..+.. ......+++.+++++|.+.+..... ......+++.|+++++.+... +
T Consensus 241 ~~l~~------------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 241 NELLK------------------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp HHHHG------------------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred HHHHH------------------Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence 11100 0011234445555555444421100 000116788888888876532 2
Q ss_pred CccccCCCCCCEEEcCCCcccccCCCCc-CCCCCcCEEEccCceeeeeCC---ccccCCCCCcEEecCCccccccCCh--
Q 046848 576 PDCWSQFDSLAILNLANNSFFGKIPDSI-GFLKNLQSLSLYNNRLTGELP---SFFTNGSQLTLMDLGKNGLSGEIPT-- 649 (956)
Q Consensus 576 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~ip~-- 649 (956)
+..+...++|+.|++++|++. .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++|+++ .+|.
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 380 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTG 380 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccch
Confidence 223344678999999999987 667665 579999999999999998764 34788899999999999998 4543
Q ss_pred hHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccc
Q 046848 650 WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSL 729 (956)
Q Consensus 650 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 729 (956)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+.
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~---------------------------- 430 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP---------------------------- 430 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC----------------------------
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc----------------------------
Confidence 33447999999999999998 688888999999999999999874 232221
Q ss_pred ccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEE
Q 046848 730 KTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLD 809 (956)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 809 (956)
+.|++|||++|++++.+ ..+++|++|+|++|+++ .+|+ .+.+++|++||
T Consensus 431 -------------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~ 479 (549)
T 2z81_A 431 -------------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMK 479 (549)
T ss_dssp -------------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEE
T ss_pred -------------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEe
Confidence 13489999999999754 57899999999999999 6787 57899999999
Q ss_pred CCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 810 LSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 810 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
|++|++++.+|..+..+++|++|++++|++.|.+|.
T Consensus 480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 999999999999999999999999999999999984
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.7e-44 Score=431.90 Aligned_cols=517 Identities=22% Similarity=0.184 Sum_probs=334.1
Q ss_pred cCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcEE
Q 046848 113 QHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIYL 192 (956)
Q Consensus 113 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 192 (956)
+.+++|||++|.|+.. .|..|.++++|++|+|++|++++..|.+|.+|++|++|+|++|++ ....+..|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEE
Confidence 4789999999999953 346799999999999999999977788899999999999999987 33444668899999999
Q ss_pred ecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCC-CCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccccceE
Q 046848 193 DLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPT-IPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNLVELI 271 (956)
Q Consensus 193 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L 271 (956)
++++|.+++++. ..++++++|++|++++|.+.+. .| ..+... ++|++|++++|++.+..+..+..+.. + +
T Consensus 130 ~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~-l-~-- 200 (635)
T 4g8a_A 130 VAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP--EYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQ-M-P-- 200 (635)
T ss_dssp ECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCC--GGGGGC-TTCCEEECCSSCCCEECGGGGHHHHT-C-T--
T ss_pred ECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCc--hhhccc-hhhhhhcccCccccccccccccchhh-h-h--
Confidence 999998887642 3467777777777777776543 22 222222 66666666666665544444443332 1 0
Q ss_pred EecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcc-hHHHhhcCCCCccCCCCEEEc
Q 046848 272 NLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDL-SEIIQNLSDGCTKTSLAWLFL 350 (956)
Q Consensus 272 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~~~~L~~L~L 350 (956)
.....++++.|.++.++........++.+++.+|...... +..+..+. .++...+
T Consensus 201 ------------------~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~------~l~~~~l 256 (635)
T 4g8a_A 201 ------------------LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA------GLEVHRL 256 (635)
T ss_dssp ------------------TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT------TCEEEEE
T ss_pred ------------------hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc------ccccccc
Confidence 1123455666666665544444455566666666544322 23344443 4444444
Q ss_pred cCCcCccc-------CCCCCCCCCCCEEEeecccccc---ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEE
Q 046848 351 DSNEITGS-------LPNFGGFSSLKRLSIANNRLNG---TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTIL 420 (956)
Q Consensus 351 s~n~l~~~-------~~~~~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 420 (956)
..+..... ...+..+..+...++..+.... .....+ ..+.+++.+
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~-------------------------~~~~~l~~l 311 (635)
T 4g8a_A 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF-------------------------NCLTNVSSF 311 (635)
T ss_dssp EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT-------------------------GGGTTCSEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh-------------------------hhhcccccc
Confidence 32222111 0113333444444444332221 111222 333444444
Q ss_pred EcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccc
Q 046848 421 YLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQI 500 (956)
Q Consensus 421 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l 500 (956)
++.++.+.... .+.....++.|++.+|.+.+..+. ..
T Consensus 312 ~~~~~~~~~~~--------------------------~~~~~~~L~~L~l~~~~~~~~~~~----~l------------- 348 (635)
T 4g8a_A 312 SLVSVTIERVK--------------------------DFSYNFGWQHLELVNCKFGQFPTL----KL------------- 348 (635)
T ss_dssp EEESCEEEECG--------------------------GGGSCCCCSEEEEESCEESSCCCC----BC-------------
T ss_pred ccccccccccc--------------------------ccccchhhhhhhcccccccCcCcc----cc-------------
Confidence 44444333111 011112233333333322211110 01
Q ss_pred cccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCcccc
Q 046848 501 KGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWS 580 (956)
Q Consensus 501 ~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 580 (956)
..|+.++++.|.+... ....
T Consensus 349 ----------------------------------------------------------~~L~~l~l~~n~~~~~--~~~~ 368 (635)
T 4g8a_A 349 ----------------------------------------------------------KSLKRLTFTSNKGGNA--FSEV 368 (635)
T ss_dssp ----------------------------------------------------------TTCCEEEEESCCSCCB--CCCC
T ss_pred ----------------------------------------------------------hhhhhcccccccCCCC--cccc
Confidence 2333444444433321 1223
Q ss_pred CCCCCCEEEcCCCccc--ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccC
Q 046848 581 QFDSLAILNLANNSFF--GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658 (956)
Q Consensus 581 ~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 658 (956)
.+++|+.|++++|.+. +..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++++|+.....+...+..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccc
Confidence 4556666666666554 2344455566677777777777663 344566777777777777777656665555578888
Q ss_pred cEEEccCCcccccCCccccCCCCcCEEeccCCcCC-CCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS-GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD 737 (956)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (956)
+.++++.|.+.+..+..+..+++|+.|++++|++. +..|..|..+++|
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L------------------------------- 496 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------------------------- 496 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------------------------
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-------------------------------
Confidence 88888888888888888888889999999988754 3456666665555
Q ss_pred ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848 738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
++|||++|+|++.+|..|.++++|++|+|++|+|++..|..|+.+++|++|||++|++++
T Consensus 497 --------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 497 --------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp --------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred --------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 889999999998899999999999999999999999889999999999999999999999
Q ss_pred CCcccccCC-CCCCeEECcCCcceecCC
Q 046848 818 SIPSSLSQL-SRLSVMDLSYNNLSGKIP 844 (956)
Q Consensus 818 ~ip~~l~~l-~~L~~L~ls~N~l~g~ip 844 (956)
.+|+.+..+ ++|++|++++|+|+|.|.
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999998 689999999999999875
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-45 Score=429.40 Aligned_cols=457 Identities=20% Similarity=0.214 Sum_probs=315.5
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCE
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW 347 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~ 347 (956)
+.+++++|.++. +|..+. ++|++|++++|.+++++ ..|.++++|++|+|++|++++..|..+..++ +|++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ------ELEY 73 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT------TCCE
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc------CCCE
Confidence 567777777773 555444 67777777777777754 5677777777777777777776677777766 7777
Q ss_pred EEccCCcCcccCCCCCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCC--CEEEcCC
Q 046848 348 LFLDSNEITGSLPNFGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNL--TILYLAD 424 (956)
Q Consensus 348 L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~Ls~ 424 (956)
|++++|.+++. |.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++. .+..+++| ++|++++
T Consensus 74 L~Ls~N~l~~l-p~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 74 LDLSHNKLVKI-SCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EECCSSCCCEE-ECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEE
T ss_pred EecCCCceeec-Ccc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeec
Confidence 77777777643 323 66777777777777765 3566677777777777777766652 24455555 6666666
Q ss_pred CcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhccc-ceeEEEeeCCCCCCCccchhhhccCCcceEeccccc----
Q 046848 425 NSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQN-QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQ---- 499 (956)
Q Consensus 425 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~---- 499 (956)
|.+.+ .+..|..+..+. +...+++++|.+.+.++......+++|+.+++++|.
T Consensus 148 n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 148 GETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp CTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred ccccc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 65510 233333333332 233445555555555554444445555555555554
Q ss_pred ---ccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccch-hh-hccCCceeEEECCCCCCCCC
Q 046848 500 ---IKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISF-LC-SITGHKLDYIDLSNNLLSGR 574 (956)
Q Consensus 500 ---l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~~~L~~L~Ls~n~l~~~ 574 (956)
+.+.+|. +.. ..+++.|++++|.+++.... .. ....++|++|++++|+++|.
T Consensus 206 ~~~~~~~~~~-l~~----------------------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 206 CSYFLSILAK-LQT----------------------NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp THHHHHHHHG-GGG----------------------CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred cceeecchhh-hcc----------------------ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 3332221 111 12333444444433332110 00 00115788888888888888
Q ss_pred CCccc-----cCCCCCCEEEcCCCcccccCC-CCcCCC---CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccc
Q 046848 575 LPDCW-----SQFDSLAILNLANNSFFGKIP-DSIGFL---KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSG 645 (956)
Q Consensus 575 ~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 645 (956)
+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence 88877 8888888889988888 455 344433 67899999999876432 12678889999999999987
Q ss_pred cCChhHhhcCccCcEEEccCCcccc--cCCccccCCCCcCEEeccCCcCCCCcChh-ccccccCcccccCcccccccccc
Q 046848 646 EIPTWIGEGLVNLVVLSLKSNKFNG--SIPLQLCHLANVQILDLSSNNISGIIPKC-FNNFTAMTHEKGSNLTLISNYYT 722 (956)
Q Consensus 646 ~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~ 722 (956)
.+|..+. .+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +..++.|
T Consensus 339 ~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L---------------- 401 (520)
T 2z7x_B 339 TVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL---------------- 401 (520)
T ss_dssp TTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC----------------
T ss_pred hhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC----------------
Confidence 7888776 68999999999999986 56677889999999999999998756643 4444444
Q ss_pred cccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCC
Q 046848 723 SLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQL 802 (956)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 802 (956)
+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+
T Consensus 402 -----------------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 402 -----------------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp -----------------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred -----------------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 8899999999988887664 78999999999999 899988999
Q ss_pred CCCCEEECCCCccCcCCcc-cccCCCCCCeEECcCCcceecCCC
Q 046848 803 KSLDFLDLSRNQFFGSIPS-SLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 803 ~~L~~L~Ls~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
++|++|+|++|++++ +|. .+..+++|++|++++|+++|.++.
T Consensus 444 ~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 444 EALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999995 555 489999999999999999998764
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=415.03 Aligned_cols=449 Identities=18% Similarity=0.219 Sum_probs=307.7
Q ss_pred CCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEE
Q 046848 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLT 319 (956)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~ 319 (956)
++|++|++++|.+.+..|..+..+.. | ++|++++|.+++..|+.|.++++|++|++++|+++++|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~-L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSK-L-RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTT-C-CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhcccccc-c-cEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 56666666666666655556666665 6 7777777777766666777777777777777777776655 667777777
Q ss_pred ccCCCCCC-cchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCC--CEEEeecccc--ccccchhhcCCC-CCC
Q 046848 320 LSYNTLRG-DLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSL--KRLSIANNRL--NGTINKSVGQLV-KLE 393 (956)
Q Consensus 320 Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l~-~L~ 393 (956)
+++|.+++ .+|..++.++ +|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+. ...
T Consensus 97 L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred ccCCccccccchhhhccCC------cceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 77777765 3556666666 66777776666654 234555555 6666666666 555555554443 223
Q ss_pred EEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCC
Q 046848 394 SLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNS 473 (956)
Q Consensus 394 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 473 (956)
.+++++|.+.+.++...+.++++|+.+++++|....... .+.+.+| .+..+++|+.|++++|
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeecchh-hhccccchhhcccccc
Confidence 455556655555544444455555555555543100000 0222222 5666777777777777
Q ss_pred CCCCCccchhhh--ccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccc
Q 046848 474 GISDTVPNWFWN--QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSIS 551 (956)
Q Consensus 474 ~i~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~ 551 (956)
.+++..+..+.. ..++|++|++++|+++|.+|..+..... ..
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~--------------------~~---------------- 274 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG--------------------TS---------------- 274 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS--------------------CC----------------
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc--------------------cc----------------
Confidence 766543332221 1236777777777777666654211000 00
Q ss_pred hhhhccCCceeEEECCCCCCCCCCC-ccccCC---CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccc
Q 046848 552 FLCSITGHKLDYIDLSNNLLSGRLP-DCWSQF---DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFF 627 (956)
Q Consensus 552 ~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 627 (956)
.+.|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+|..+
T Consensus 275 ------l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 275 ------LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp ------CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred ------CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 16788888888888 455 444444 67889999998876432 12678889999999999998888889
Q ss_pred cCCCCCcEEecCCccccc--cCChhHhhcCccCcEEEccCCcccccCCcc-ccCCCCcCEEeccCCcCCCCcChhccccc
Q 046848 628 TNGSQLTLMDLGKNGLSG--EIPTWIGEGLVNLVVLSLKSNKFNGSIPLQ-LCHLANVQILDLSSNNISGIIPKCFNNFT 704 (956)
Q Consensus 628 ~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 704 (956)
..+++|++|++++|++++ .+|..+. .+++|++|++++|++.+.+|.. +..+++|+.|++++|++++.+|..+. +
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred ccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 999999999999999985 5556665 7999999999999998756654 78889999999999999877765543 2
Q ss_pred cCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEE
Q 046848 705 AMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIAL 784 (956)
Q Consensus 705 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 784 (956)
. |+.|||++|+++ .+|..+..+++|++|
T Consensus 422 ~---------------------------------------------------L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 422 R---------------------------------------------------IKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp T---------------------------------------------------CCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred c---------------------------------------------------CCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 2 389999999999 888888899999999
Q ss_pred EcccccccccCCcc-ccCCCCCCEEECCCCccCcCCc
Q 046848 785 NLSRNTLTGQITPK-IGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 785 ~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
+|++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999 56665 9999999999999999998655
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-43 Score=428.38 Aligned_cols=354 Identities=20% Similarity=0.255 Sum_probs=199.0
Q ss_pred CcCcccCCCCCCCCCCCEEEeecccccc-----------------ccchhhc--CCCCCCEEECcCccCccccCHHhhhC
Q 046848 353 NEITGSLPNFGGFSSLKRLSIANNRLNG-----------------TINKSVG--QLVKLESLFLHNNSLRGVISEAFLSN 413 (956)
Q Consensus 353 n~l~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~ 413 (956)
|.+++.++.++++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|. .+.+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhC
Confidence 4444422225555555555555555554 2555554 566666666666665555554 2555
Q ss_pred CCCCCEEEcCCCc-ccc-cccCC-------cCCCCCcceEEcCCCCCCCCCch--hhhcccceeEEEeeCCCCCCCccch
Q 046848 414 LSNLTILYLADNS-LTL-EFSHD-------WIPPFQLSQVNLGSCKIGPRFPK--WLRNQNQILSLDISNSGISDTVPNW 482 (956)
Q Consensus 414 l~~L~~L~Ls~n~-l~~-~~~~~-------~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~ 482 (956)
+++|++|+|++|+ +++ ..+.. +..+++|+.|++++|.+. .+|. .+.++++|+.|++++|+++ .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 6666666666665 554 33332 233447777777777777 6777 7888888888888888887 555 2
Q ss_pred hhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCcee
Q 046848 483 FWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLD 562 (956)
Q Consensus 483 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~ 562 (956)
+ ..++ +|+
T Consensus 591 ~-~~L~-----------------------------------------------------------------------~L~ 598 (876)
T 4ecn_A 591 F-GTNV-----------------------------------------------------------------------KLT 598 (876)
T ss_dssp C-CTTS-----------------------------------------------------------------------EES
T ss_pred h-cCCC-----------------------------------------------------------------------cce
Confidence 2 2233 344
Q ss_pred EEECCCCCCCCCCCccccCCCC-CCEEEcCCCcccccCCCCcCCCCC--cCEEEccCceeeeeCCccc---c--CCCCCc
Q 046848 563 YIDLSNNLLSGRLPDCWSQFDS-LAILNLANNSFFGKIPDSIGFLKN--LQSLSLYNNRLTGELPSFF---T--NGSQLT 634 (956)
Q Consensus 563 ~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~ 634 (956)
.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++++.+|... . .+++|+
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 4444444444 44444444444 555555555544 44444444332 5555555555544333211 1 223555
Q ss_pred EEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCC--------CCcCEEeccCCcCCCCcChhcc--ccc
Q 046848 635 LMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL--------ANVQILDLSSNNISGIIPKCFN--NFT 704 (956)
Q Consensus 635 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~ 704 (956)
.|+|++|+++ .+|..++..+++|+.|+|++|++. .+|..+... ++|+.|+|++|+++ .+|..+. .++
T Consensus 677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 5555555555 555555544555555555555555 344333221 25666666666665 4444443 333
Q ss_pred cCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEE
Q 046848 705 AMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIAL 784 (956)
Q Consensus 705 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 784 (956)
+| +.|+|++|++++ +|..+..+++|+.|
T Consensus 754 ~L---------------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 754 YL---------------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp TC---------------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred Cc---------------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 33 556666666664 55566666666666
Q ss_pred Eccc------ccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848 785 NLSR------NTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 785 ~Ls~------N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
+|++ |++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.||+++|++...
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 6654 667777777777777777777777777 56676654 4677777777776543
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-44 Score=432.10 Aligned_cols=449 Identities=19% Similarity=0.250 Sum_probs=336.5
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCc-------------cccccccCCCCCCEEEccCCCCCCcchHHHhh
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFR-------------EIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQN 335 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------------~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 335 (956)
+.|+|+++.+.|.+|+.++++++|++|+|++|.+. .+|... +..|+ +++++|.+.+.+|..+..
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCH
T ss_pred EEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHH
Confidence 77788888888888888888888888888888652 233322 34566 777777777766654432
Q ss_pred cCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEe--eccccccccchhhcCCCCCCEEECcCccCccc--------
Q 046848 336 LSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSI--ANNRLNGTINKSVGQLVKLESLFLHNNSLRGV-------- 405 (956)
Q Consensus 336 l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-------- 405 (956)
+. ..+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|++|++++|.+++.
T Consensus 161 ~~-----~~l~~~~l~~~~~~~-----~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 161 LI-----KDCINSDPQQKSIKK-----SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp HH-----HHHHHHCTTSCCCCC-----CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HH-----HHHhhcCcccccccc-----ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 11 012222222211110 11112222222 2466666 677777777777777777777763
Q ss_pred ---------cCHHhhh--CCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCC-CCC-CCchhhhcc------ccee
Q 046848 406 ---------ISEAFLS--NLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCK-IGP-RFPKWLRNQ------NQIL 466 (956)
Q Consensus 406 ---------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~ 466 (956)
+|.. +. ++++|++|++++|.+.+..+..+..+++|++|++++|+ +++ .+|..+..+ ++|+
T Consensus 230 ~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 230 ENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp TTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred cccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 4443 45 77777777777777777777777777777888888887 776 678877776 8999
Q ss_pred EEEeeCCCCCCCccc--hhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCC
Q 046848 467 SLDISNSGISDTVPN--WFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKN 544 (956)
Q Consensus 467 ~L~Ls~n~i~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n 544 (956)
+|++++|+++ .+|. .+ ..+++|++|++++|+++|.+| .+..
T Consensus 309 ~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~---------------------------------- 351 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGS---------------------------------- 351 (636)
T ss_dssp EEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEE----------------------------------
T ss_pred EEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCC----------------------------------
Confidence 9999999998 6776 44 446688888888888877666 2111
Q ss_pred cCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCC-CCEEEcCCCcccccCCCCcCCCC--CcCEEEccCceeee
Q 046848 545 KFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDS-LAILNLANNSFFGKIPDSIGFLK--NLQSLSLYNNRLTG 621 (956)
Q Consensus 545 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~ 621 (956)
. ++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|++++
T Consensus 352 -----------l--~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 352 -----------E--IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp -----------E--EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred -----------C--CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 0 57888888888888 77888888888 999999999988 7788877655 89999999999998
Q ss_pred eCCcccc-------CCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccC-C-------CCcCEEe
Q 046848 622 ELPSFFT-------NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH-L-------ANVQILD 686 (956)
Q Consensus 622 ~~p~~~~-------~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l-------~~L~~L~ 686 (956)
.+|..+. .+++|++|+|++|+++ .+|..++..+++|++|++++|+++ .+|..... . ++|+.|+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred cchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence 8888888 7889999999999998 888888867899999999999998 56654332 2 3899999
Q ss_pred ccCCcCCCCcChhcc--ccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCC
Q 046848 687 LSSNNISGIIPKCFN--NFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS 764 (956)
Q Consensus 687 Ls~N~l~~~~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 764 (956)
|++|+++ .+|..+. .+++| +.|+|++
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L---------------------------------------------------~~L~Ls~ 522 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYL---------------------------------------------------VGIDLSY 522 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTC---------------------------------------------------CEEECCS
T ss_pred CcCCcCC-ccChhhhhccCCCc---------------------------------------------------CEEECCC
Confidence 9999998 6676654 55555 8899999
Q ss_pred CCCCCCCchhhhccccCCEEEc------ccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCc
Q 046848 765 NKLGGEVPEEIMDLAGLIALNL------SRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNN 838 (956)
Q Consensus 765 N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~ 838 (956)
|++++ +|..+..+++|+.|+| ++|++.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.||+++|+
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 99997 8999999999999999 56889999999999999999999999999 68888876 799999999999
Q ss_pred ceec
Q 046848 839 LSGK 842 (956)
Q Consensus 839 l~g~ 842 (956)
+.+.
T Consensus 599 l~~~ 602 (636)
T 4eco_A 599 NISI 602 (636)
T ss_dssp TCEE
T ss_pred Cccc
Confidence 9864
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-42 Score=409.51 Aligned_cols=481 Identities=21% Similarity=0.232 Sum_probs=298.9
Q ss_pred cEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCCEE
Q 046848 293 NTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRL 371 (956)
Q Consensus 293 ~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L 371 (956)
+++++++|.++++|..+. ++|++|++++|.+++..+..+..++ +|++|++++|.+++..|. |..+++|++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLS------ELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCT------TCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCC------CccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 444444444444443332 4444444444444444444444444 444444444444444333 4444555555
Q ss_pred EeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCc--ceEEcCCC
Q 046848 372 SIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQL--SQVNLGSC 449 (956)
Q Consensus 372 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L--~~L~L~~n 449 (956)
++++|.++ .+|.. .+++|++|++++|++++......++++++|++|++++|.++.. .+..+.+| +.|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 55555544 23322 4455555555555554432111244555555555555554432 22222233 55555555
Q ss_pred CC--CCCCchhhhccc-ceeEEEeeCCCCCCCccchhhhccCCcceEeccccccc-----ccCCCCCCCCcCCCCeeecc
Q 046848 450 KI--GPRFPKWLRNQN-QILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIK-----GKLPNLSSRFHPYRPGIDIS 521 (956)
Q Consensus 450 ~l--~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~~~~l~~~l~ls 521 (956)
.+ .+..|..+..+. ....+++++|.+.+.++......+++|+.+++++|+.. +.++. +..
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~----------- 247 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTR----------- 247 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHS-----------
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-Hhc-----------
Confidence 55 455555555443 12245666666666666555555666677776666411 11100 000
Q ss_pred cceeeecCCCCCCCCceeeCCCCcCccc-----cchhhhccCCceeEEECCCCCCCCCCCccc-----cCCCCCCEEEcC
Q 046848 522 SNQFEGPIPQLPLNASFLNLSKNKFSGS-----ISFLCSITGHKLDYIDLSNNLLSGRLPDCW-----SQFDSLAILNLA 591 (956)
Q Consensus 522 ~n~l~g~~p~~~~~l~~L~l~~n~l~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls 591 (956)
...++.+++.++.+.+. .+... .++|++|++++|.++|.+|..+ ..++.|+.++++
T Consensus 248 -----------l~~L~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~ 313 (562)
T 3a79_B 248 -----------GPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313 (562)
T ss_dssp -----------CSSCEEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred -----------cCcceEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence 12333344433333321 11111 1589999999999999888877 666677777777
Q ss_pred CCcccccCC-CCcCC---CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCc
Q 046848 592 NNSFFGKIP-DSIGF---LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNK 667 (956)
Q Consensus 592 ~N~l~~~~p-~~~~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~ 667 (956)
.|.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|..+. ++++|++|++++|+
T Consensus 314 ~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 314 NQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNG 388 (562)
T ss_dssp ECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSC
T ss_pred ccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCC
Confidence 7766 344 22221 257999999999886322 126889999999999999988888876 79999999999999
Q ss_pred ccc--cCCccccCCCCcCEEeccCCcCCCCcCh-hccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848 668 FNG--SIPLQLCHLANVQILDLSSNNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK 744 (956)
Q Consensus 668 l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (956)
+++ .+|..+..+++|++|++++|++++.+|. .+..++.|
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L-------------------------------------- 430 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-------------------------------------- 430 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC--------------------------------------
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC--------------------------------------
Confidence 986 3456789999999999999999985554 35554444
Q ss_pred CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCccc-c
Q 046848 745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSS-L 823 (956)
Q Consensus 745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l 823 (956)
+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +
T Consensus 431 -------------~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 493 (562)
T 3a79_B 431 -------------LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVF 493 (562)
T ss_dssp -------------CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTST
T ss_pred -------------CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHH
Confidence 8999999999988776654 78999999999999 789888899999999999999995 5555 9
Q ss_pred cCCCCCCeEECcCCcceecCCCCCcCCcc---ccccccCCCCCCCCCCCCCCC
Q 046848 824 SQLSRLSVMDLSYNNLSGKIPSGTQLQSF---STSMYAGNELCGLPLPNKCPD 873 (956)
Q Consensus 824 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~~---~~~~~~~n~l~~~~~~~~c~~ 873 (956)
..+++|++|++++|++.|.||....+..+ ....+..+.-++.|....|..
T Consensus 494 ~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp TTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred hcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 99999999999999999998753221111 111111122346666677865
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-39 Score=390.16 Aligned_cols=526 Identities=20% Similarity=0.202 Sum_probs=378.7
Q ss_pred EEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccC
Q 046848 244 VIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSY 322 (956)
Q Consensus 244 ~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~ 322 (956)
..+.++.+++ .+|..+ +..+ ++|||++|.+++..+.+|.++++|++|+|++|+++++| .+|.++++|++|+|++
T Consensus 35 ~~~c~~~~l~-~vP~~l---p~~~-~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNL---PFST-KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCS-SCCSSS---CTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcC-ccCCCC---CcCC-CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 4455555554 456543 2336 88999999999888888999999999999999999875 4688899999999999
Q ss_pred CCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCCCCCEEEeecccccc-ccchhhcCCCCCCEEECcCc
Q 046848 323 NTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNG-TINKSVGQLVKLESLFLHNN 400 (956)
Q Consensus 323 n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n 400 (956)
|++++..+..|..++ +|++|++++|++++..+. |+++++|++|++++|.+++ ..|..++.+++|++|++++|
T Consensus 110 N~l~~l~~~~f~~L~------~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 110 NPIQSLALGAFSGLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCCCEECGGGGTTCT------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CcCCCCCHHHhcCCC------CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 999887778888887 899999999998877665 8888999999999998875 35677888889999999999
Q ss_pred cCccccCHHhhhCCCC----CCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCC-CCchhhhcccceeEEEeeCCCC
Q 046848 401 SLRGVISEAFLSNLSN----LTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGP-RFPKWLRNQNQILSLDISNSGI 475 (956)
Q Consensus 401 ~l~~~~~~~~~~~l~~----L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i 475 (956)
++++..+.. +..+.+ ...++++.|.+....+..+. ...++.+++.+|.... ..+..+..+..++...+..+..
T Consensus 184 ~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 184 KIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp CCCEECGGG-GHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred ccccccccc-ccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 888876654 333332 34677888877655443332 2344556665554432 2233445555555544433222
Q ss_pred CCCc-----cchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCC--CCCCCCceeeCCCCcCcc
Q 046848 476 SDTV-----PNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIP--QLPLNASFLNLSKNKFSG 548 (956)
Q Consensus 476 ~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p--~~~~~l~~L~l~~n~l~~ 548 (956)
.... ..........+...++..+... ....+... ....++..+++.++.+..
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~---------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLD---------------------YYLDGIIDLFNCLTNVSSFSLVSVTIER 320 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCC---------------------SCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred ccccccccccccccccccchhhhhhhhhhhc---------------------ccccchhhhhhhhccccccccccccccc
Confidence 1110 0000111112222222211111 11111111 113456677777776655
Q ss_pred ccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCcc
Q 046848 549 SISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSF 626 (956)
Q Consensus 549 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~ 626 (956)
..+.. .. ..++.|++++|.+.+..+. .+..|+.+++..|.+.... ....+++|+.|++++|.+. +..+..
T Consensus 321 ~~~~~-~~--~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 321 VKDFS-YN--FGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp CGGGG-SC--CCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccccc-cc--hhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccc
Confidence 43321 11 6789999999988755443 4667889999999876443 3457899999999999885 456677
Q ss_pred ccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhcccccc
Q 046848 627 FTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705 (956)
Q Consensus 627 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 705 (956)
+..+.+|+.++++.|.+. .++..+. .+++|+.++++.|+.....+ ..+..+++++.+++++|.+.+..+..+..++.
T Consensus 393 ~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 788899999999999987 4555555 68999999999888776554 45788999999999999999888877776665
Q ss_pred CcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCC-CCCCchhhhccccCCEE
Q 046848 706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKL-GGEVPEEIMDLAGLIAL 784 (956)
Q Consensus 706 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~L 784 (956)
+ +.|+|++|++ .+.+|..|..+++|++|
T Consensus 471 L---------------------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 471 L---------------------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp C---------------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred h---------------------------------------------------hhhhhhhcccccccCchhhhhccccCEE
Confidence 5 8999999985 45678899999999999
Q ss_pred EcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCC-cC-CccccccccCC-C
Q 046848 785 NLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGT-QL-QSFSTSMYAGN-E 861 (956)
Q Consensus 785 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~-~~~~~~~~~~n-~ 861 (956)
||++|++++.+|..|+++++|++|+|++|+|++.+|..|..+++|++||+++|++++..|..- .+ ..+....+.+| .
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999988652 22 34555667788 5
Q ss_pred CCC
Q 046848 862 LCG 864 (956)
Q Consensus 862 l~~ 864 (956)
-|.
T Consensus 580 ~C~ 582 (635)
T 4g8a_A 580 ACT 582 (635)
T ss_dssp CCS
T ss_pred ccc
Confidence 564
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-40 Score=392.49 Aligned_cols=446 Identities=19% Similarity=0.258 Sum_probs=287.7
Q ss_pred CCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEE
Q 046848 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLT 319 (956)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~ 319 (956)
++|++|++++|.+.+..+..+..++. | ++|++++|.+++..|+.|.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~-L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSE-L-RVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTT-C-CEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCC-c-cEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 55666666666666555555666655 6 6677777777666666677777777777777777766655 667777777
Q ss_pred ccCCCCCCc-chHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCC--CEEEeecccc--ccccchhhcCCC--CC
Q 046848 320 LSYNTLRGD-LSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSL--KRLSIANNRL--NGTINKSVGQLV--KL 392 (956)
Q Consensus 320 Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l~--~L 392 (956)
+++|.+++. +|..+++++ +|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+. .+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~------~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLT------KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCT------TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred CCCCCccccCchHhhcccC------cccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 777776653 345666666 677777777766542 24444444 7777777766 555555555443 22
Q ss_pred CEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeC
Q 046848 393 ESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISN 472 (956)
Q Consensus 393 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 472 (956)
.+++++|.+.+.++...+..+++|+.+++++|...... + ......+..+++|+.+++++
T Consensus 200 -~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-------------------l-~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 200 -HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR-------------------L-MTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp -EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH-------------------H-HHHHHHHHSCSSCEEEEEEE
T ss_pred -EEEecCccchhhhhhhcccccceEEEecccccccccch-------------------H-HHHHHHHhccCcceEEEecC
Confidence 44556666655554444445555555555555311000 0 01223455666777777776
Q ss_pred CCCCCCccchhhh--ccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCcccc
Q 046848 473 SGISDTVPNWFWN--QTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSI 550 (956)
Q Consensus 473 n~i~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~ 550 (956)
+.+.+.....+.. ...+|++|++++|.++|.+|..+.... ..++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~--------------------~~~L-------------- 304 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS--------------------ETAL-------------- 304 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCC--------------------SCSC--------------
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcc--------------------cccc--------------
Confidence 6665432111111 123677777777777766664421100 0111
Q ss_pred chhhhccCCceeEEECCCCCCCCCCC-ccccC---CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCcc
Q 046848 551 SFLCSITGHKLDYIDLSNNLLSGRLP-DCWSQ---FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSF 626 (956)
Q Consensus 551 ~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 626 (956)
+.|+.++++.+.+ .+| ..+.. ..+|+.|++++|.+.... ....+++|++|++++|++++.+|..
T Consensus 305 --------~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 305 --------KSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp --------CEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred --------hheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence 3455555555555 333 22211 246777888777765321 1256778888888888888777888
Q ss_pred ccCCCCCcEEecCCccccc--cCChhHhhcCccCcEEEccCCcccccCCc-cccCCCCcCEEeccCCcCCCCcChhcccc
Q 046848 627 FTNGSQLTLMDLGKNGLSG--EIPTWIGEGLVNLVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCFNNF 703 (956)
Q Consensus 627 ~~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 703 (956)
+.++++|++|++++|++++ .+|..+. ++++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 8888888888888888873 2233344 688888888888888875554 477888999999999999876665443
Q ss_pred ccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCE
Q 046848 704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIA 783 (956)
Q Consensus 704 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 783 (956)
+. |+.|+|++|+++ .+|..+..+++|++
T Consensus 450 ~~---------------------------------------------------L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 450 PK---------------------------------------------------VKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp TT---------------------------------------------------CSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred Cc---------------------------------------------------CCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 22 388999999998 78887789999999
Q ss_pred EEcccccccccCCcc-ccCCCCCCEEECCCCccCcCCc
Q 046848 784 LNLSRNTLTGQITPK-IGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 784 L~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
|+|++|+++ .+|.. ++.+++|+.|++++|++++..|
T Consensus 478 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 478 LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999999 56666 9999999999999999998765
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.3e-39 Score=369.51 Aligned_cols=372 Identities=20% Similarity=0.191 Sum_probs=258.9
Q ss_pred CCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEE
Q 046848 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN 445 (956)
Q Consensus 366 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 445 (956)
++|++|++++|.+++..|..++.+++|++|++++|.+.+.++...+..+++|++|++++|.++...+..+..+.+|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666555556666666666666666665444444456666666666666666655555555566666666
Q ss_pred cCCCCCCCCCchh--hhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccc
Q 046848 446 LGSCKIGPRFPKW--LRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSN 523 (956)
Q Consensus 446 L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n 523 (956)
+++|.+.+..+.. +..+++|++|++++|.+++..|..+...+++|++|++++|++++..|..+...
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------ 177 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF------------ 177 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc------------
Confidence 6666665544333 66777777777777777776666655556677777777776665444321110
Q ss_pred eeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccc--------cCCCCCCEEEcCCCcc
Q 046848 524 QFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCW--------SQFDSLAILNLANNSF 595 (956)
Q Consensus 524 ~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--------~~l~~L~~L~Ls~N~l 595 (956)
...+++.|++++|.+.+..+..+ ..+++|++|++++|++
T Consensus 178 ---------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 178 ---------------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp ---------------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred ---------------------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 01467788888888776444332 2344555566666655
Q ss_pred cccCCCCcCCC---CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHh-hcCccCcEEEccCCccccc
Q 046848 596 FGKIPDSIGFL---KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIG-EGLVNLVVLSLKSNKFNGS 671 (956)
Q Consensus 596 ~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~-~~l~~L~~L~L~~N~l~~~ 671 (956)
.+..|..+... ++|+.|++++|.+.+... ..+.+.+..+..+. ...++|++|++++|++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCcccccc
Confidence 55544444322 455555555554432110 11112111111111 0246899999999999999
Q ss_pred CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceec
Q 046848 672 IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQ 751 (956)
Q Consensus 672 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (956)
+|..+..+++|+.|++++|++++..|..|..++.|
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------- 325 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL--------------------------------------------- 325 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccC---------------------------------------------
Confidence 99999999999999999999998888888777666
Q ss_pred ccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCe
Q 046848 752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSV 831 (956)
Q Consensus 752 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 831 (956)
++|+|++|++++..|..+..+++|++|+|++|++++..|..++.+++|++|+|++|++++..+..+..+++|++
T Consensus 326 ------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 326 ------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp ------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 89999999999888999999999999999999999999999999999999999999999888888899999999
Q ss_pred EECcCCcceecCCCCC
Q 046848 832 MDLSYNNLSGKIPSGT 847 (956)
Q Consensus 832 L~ls~N~l~g~ip~~~ 847 (956)
|++++|+++|.+|...
T Consensus 400 L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 400 IWLHTNPWDCSCPRID 415 (455)
T ss_dssp EECCSSCBCCCTTTTH
T ss_pred EEccCCCcccCCCcch
Confidence 9999999999999643
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.6e-40 Score=373.09 Aligned_cols=432 Identities=24% Similarity=0.291 Sum_probs=197.7
Q ss_pred cccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCC
Q 046848 107 SSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHL 186 (956)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l 186 (956)
|.-.+.++|++|++++|.+ + .+|+.++++++|++|++++|.++|.+|..++++++|+++++..|..
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------ 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence 3444568999999999999 4 4999999999999999999999999999999999887777766531
Q ss_pred CCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhccc
Q 046848 187 SSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSN 266 (956)
Q Consensus 187 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 266 (956)
.++++|++++|.+++++.+ .++|++|++++|.+.+ +|. ..++|++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~------~~~~L~~---------------------- 115 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPE------LPQSLKS---------------------- 115 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCC------CCTTCCE----------------------
T ss_pred cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-ccc------ccCCCcE----------------------
Confidence 4566777777766665432 2455555555555544 221 0134444
Q ss_pred ccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCC
Q 046848 267 LVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLA 346 (956)
Q Consensus 267 L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 346 (956)
|++++|.+++. |.. .++|++|++++|.++++| .+.++++|++|++++|++++ +|.. .. +|+
T Consensus 116 ----L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~------~L~ 176 (454)
T 1jl5_A 116 ----LLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDL---PP------SLE 176 (454)
T ss_dssp ----EECCSSCCSCC-CSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCC---CT------TCC
T ss_pred ----EECCCCccCcc-cCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCC---cc------ccc
Confidence 44444444431 110 145666666666666655 35666666666666666554 2221 11 566
Q ss_pred EEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCc
Q 046848 347 WLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNS 426 (956)
Q Consensus 347 ~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 426 (956)
+|++++|.+++ +|.++.+++|++|++++|.+++ +|.. .++|++|++++|.++. +|. +..+++|++|++++|+
T Consensus 177 ~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 177 FIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEE-LPE--LQNLPFLTTIYADNNL 248 (454)
T ss_dssp EEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSC
T ss_pred EEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCc-ccc--cCCCCCCCEEECCCCc
Confidence 66666666665 3456666666666666666654 2221 2466666666666663 332 5566666666666666
Q ss_pred ccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCC
Q 046848 427 LTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPN 506 (956)
Q Consensus 427 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 506 (956)
+++... .+.+|+.|++++|.+.+ +|.. .++|++|++++|.+++. |
T Consensus 249 l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~-------------------------- 293 (454)
T 1jl5_A 249 LKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-S-------------------------- 293 (454)
T ss_dssp CSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-S--------------------------
T ss_pred CCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-c--------------------------
Confidence 553211 11344444444444432 2211 13444444444444331 0
Q ss_pred CCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCC
Q 046848 507 LSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLA 586 (956)
Q Consensus 507 ~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 586 (956)
..+.+++.|++++|.+++... . .++|++|++++|++++ +|.. +++|+
T Consensus 294 ------------------------~~~~~L~~L~l~~N~l~~i~~-~----~~~L~~L~Ls~N~l~~-lp~~---~~~L~ 340 (454)
T 1jl5_A 294 ------------------------ELPPNLYYLNASSNEIRSLCD-L----PPSLEELNVSNNKLIE-LPAL---PPRLE 340 (454)
T ss_dssp ------------------------CCCTTCCEEECCSSCCSEECC-C----CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred ------------------------CcCCcCCEEECcCCcCCcccC-C----cCcCCEEECCCCcccc-cccc---CCcCC
Confidence 011233344444444333110 0 0467788888888875 5543 47788
Q ss_pred EEEcCCCcccccCCCCcCCCCCcCEEEccCceeee--eCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848 587 ILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTG--ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK 664 (956)
Q Consensus 587 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 664 (956)
+|++++|+++ .+|. .+++|++|++++|++++ .+|..+.. ++.|.+.|.+|.. +++|++|+++
T Consensus 341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~----~~~L~~L~ls 404 (454)
T 1jl5_A 341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL----PQNLKQLHVE 404 (454)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------
T ss_pred EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc----cCcCCEEECC
Confidence 8888888887 4565 36788888888888887 56655432 3346677777762 5688899999
Q ss_pred CCcccc--cCCccccCCCCcCEEeccCCcCCCCcChhccccc
Q 046848 665 SNKFNG--SIPLQLCHLANVQILDLSSNNISGIIPKCFNNFT 704 (956)
Q Consensus 665 ~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 704 (956)
+|++++ .+|. +++.|.+.+|.+.+.++.......
T Consensus 405 ~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~~ 440 (454)
T 1jl5_A 405 TNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETTD 440 (454)
T ss_dssp ------------------------------------------
T ss_pred CCcCCccccchh------hHhheeCcCcccCCccccCHHHhh
Confidence 999886 5553 466777888888877766555443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-38 Score=362.89 Aligned_cols=144 Identities=24% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCccEEEcCCCcCCCCcchhhHhhcccccceEEecccccccCCCcccCCCCCC-------------cEEECCCCcCcccc
Q 046848 240 TSLEVIVILGNNLTDSIYPWLFNVSSNLVELINLGSNQLQGSIPEAFGHMPSL-------------NTLFLASNQFREIP 306 (956)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~ip 306 (956)
+.|+++++++|.+ +.+|..+++++. | ++|++++|.+.|.+|..++.+++| ++|++++|.++++|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~-L-~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKS-K-TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp ------------------------CC-H-HHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCch-hhCChhHhcccc-h-hhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 5677777777777 677777777777 7 778888888877777777777664 66666666666655
Q ss_pred ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhh
Q 046848 307 KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSV 386 (956)
Q Consensus 307 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 386 (956)
.. .++|++|++++|.+++ +|.. .. +|++|++++|.+++.. .+ .++|++|++++|.+++ +| .+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~------~L~~L~l~~n~l~~l~-~~--~~~L~~L~L~~n~l~~-lp-~~ 149 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQ------SLKSLLVDNNNLKALS-DL--PPLLEYLGVSNNQLEK-LP-EL 149 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CT------TCCEEECCSSCCSCCC-SC--CTTCCEEECCSSCCSS-CC-CC
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cC------CCcEEECCCCccCccc-CC--CCCCCEEECcCCCCCC-Cc-cc
Confidence 42 2456666666666554 3321 11 5555555555554321 11 1345555555555443 33 34
Q ss_pred cCCCCCCEEECcCccCcc
Q 046848 387 GQLVKLESLFLHNNSLRG 404 (956)
Q Consensus 387 ~~l~~L~~L~L~~n~l~~ 404 (956)
+.+++|++|++++|++++
T Consensus 150 ~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCTTCCEEECCSSCCSC
T ss_pred CCCCCCCEEECCCCcCcc
Confidence 444444455544444443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-37 Score=355.50 Aligned_cols=383 Identities=23% Similarity=0.279 Sum_probs=288.3
Q ss_pred ceEEecccccccCCCcccCCCCCCcEEECCCCcCccc-cccccCCCCCCEEEccCCCCCCcc-hHHHhhcCCCCccCCCC
Q 046848 269 ELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREI-PKSLGNMCNLKSLTLSYNTLRGDL-SEIIQNLSDGCTKTSLA 346 (956)
Q Consensus 269 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~~~~L~ 346 (956)
+.++.+++.++. +|. + .++|++|++++|.++++ |..|.++++|++|++++|.+.+.+ +..+..++ +|+
T Consensus 13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~------~L~ 82 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS------SLI 82 (455)
T ss_dssp TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT------TCC
T ss_pred cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccc------cCC
Confidence 344555555542 333 2 25677777777777663 556677777777777777766444 34566665 777
Q ss_pred EEEccCCcCcccCCC-CCCCCCCCEEEeeccccccccchh--hcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcC
Q 046848 347 WLFLDSNEITGSLPN-FGGFSSLKRLSIANNRLNGTINKS--VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLA 423 (956)
Q Consensus 347 ~L~Ls~n~l~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 423 (956)
+|++++|.+++..|. ++.+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..++.++++|++|+++
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 777777777766554 777777777777777777655544 77778888888888888777666667778888888888
Q ss_pred CCcccccccCCcCCC--CCcceEEcCCCCCCCCCchhh--------hcccceeEEEeeCCCCCCCccchhhhcc--CCcc
Q 046848 424 DNSLTLEFSHDWIPP--FQLSQVNLGSCKIGPRFPKWL--------RNQNQILSLDISNSGISDTVPNWFWNQT--YNLS 491 (956)
Q Consensus 424 ~n~l~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~ 491 (956)
+|.+++..+..+... .+++.+++++|.+....+.++ ..+++|++|++++|++++..|..+.... .+|+
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence 888777666666544 577888888888776555443 3567899999999999888887776542 5788
Q ss_pred eEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCC
Q 046848 492 FFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLL 571 (956)
Q Consensus 492 ~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l 571 (956)
.|++++|.+.+.... .+.+.+..+ .. +.....++|+.|++++|.+
T Consensus 243 ~L~l~~~~~~~~~~~---------------~~~~~~~~~-------------~~-------~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 243 SLILSNSYNMGSSFG---------------HTNFKDPDN-------------FT-------FKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp EEECTTCTTTSCCTT---------------CCSSCCCCT-------------TT-------TGGGTTSCCCEEECCSSCC
T ss_pred eEeeccccccccccc---------------hhhhccCcc-------------cc-------cccccccCceEEEecCccc
Confidence 899888876643211 111111000 00 0111126899999999999
Q ss_pred CCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhH
Q 046848 572 SGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWI 651 (956)
Q Consensus 572 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 651 (956)
++..|..+..+++|++|++++|++.+..|..|.++++|++|++++|++++..|..|.++++|++|+|++|++++..|..+
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997667777
Q ss_pred hhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcC
Q 046848 652 GEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP 697 (956)
Q Consensus 652 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 697 (956)
. ++++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 368 ~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 L-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp T-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred c-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6 79999999999999998777778999999999999999998877
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-38 Score=344.16 Aligned_cols=294 Identities=33% Similarity=0.489 Sum_probs=223.5
Q ss_pred CCCHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCCCcc--ccceeecCCC--CcEEEEECCCCCCCCCCCCcc--ccccc
Q 046848 35 RCIDEEREALLAFKQGLVDESGILSSWGREDEKRDCCG--WRGVNCSNRT--GHVYKLDLHILQVFPSPCLKG--TISSS 108 (956)
Q Consensus 35 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~l~g--~l~~~ 108 (956)
.|.++|++||++||+++.+|. .+.+|. .+.+||. |+||.|+..+ ++|+.+++++ +.+.| .+|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~------~~l~~~~~~~~~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------LNLPKPYPIPSS 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC------CCCSSCEECCGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC------CCccCCcccChh
Confidence 599999999999999998876 789997 4678998 9999998655 8999999998 67888 89999
Q ss_pred cccccCCCEEeCCC-CCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCC
Q 046848 109 LLILQHLTYLDLSG-NNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLS 187 (956)
Q Consensus 109 l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~ 187 (956)
+.++++|++|++++ |.+.+. +|..++++++|++|+|++|.+++.+|..+.++++|++|++++|.+ ....+..+..++
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~ 149 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLP 149 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGGGGCT
T ss_pred HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-CCcCChHHhcCC
Confidence 99999999999995 888876 899999999999999999999999999999999999999999987 334445555566
Q ss_pred CCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHhhcccc
Q 046848 188 SLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFNVSSNL 267 (956)
Q Consensus 188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~L 267 (956)
+|++|++++|.++ +.+| ..+....++|++|++++|.+.+.+|..+..+. |
T Consensus 150 ~L~~L~L~~N~l~--------------------------~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L 199 (313)
T 1ogq_A 150 NLVGITFDGNRIS--------------------------GAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--L 199 (313)
T ss_dssp TCCEEECCSSCCE--------------------------EECC--GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--C
T ss_pred CCCeEECcCCccc--------------------------CcCC--HHHhhhhhcCcEEECcCCeeeccCChHHhCCc--c
Confidence 6666666555554 2232 23333312566666666666666666665553 5
Q ss_pred cceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCE
Q 046848 268 VELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAW 347 (956)
Q Consensus 268 ~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~ 347 (956)
+.|++++|.+++..|..+..+++|++|++++|.+++.+..+..+++|++|++++|.+++.+|..+..++ +|++
T Consensus 200 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~------~L~~ 272 (313)
T 1ogq_A 200 -AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHS 272 (313)
T ss_dssp -SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT------TCCE
T ss_pred -cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCc------CCCE
Confidence 777777777777777777777777777777777776444466777777777777777777777776666 6777
Q ss_pred EEccCCcCcccCCCCCCCCCCCEEEeeccc
Q 046848 348 LFLDSNEITGSLPNFGGFSSLKRLSIANNR 377 (956)
Q Consensus 348 L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~ 377 (956)
|++++|.+++.+|....+++|+.+++++|+
T Consensus 273 L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred EECcCCcccccCCCCccccccChHHhcCCC
Confidence 777777777666666666666666666665
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.4e-35 Score=334.12 Aligned_cols=377 Identities=21% Similarity=0.188 Sum_probs=240.1
Q ss_pred cccccccccccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccc
Q 046848 103 GTISSSLLILQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEW 182 (956)
Q Consensus 103 g~l~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~ 182 (956)
+..+.+++++++|++|++++|.+++ +| .++.+++|++|++++|++++ +| ++++++|++|++++|.+... .
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~----~ 101 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL----D 101 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC----C
T ss_pred cccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee----e
Confidence 3345578889999999999999984 56 68899999999999999986 44 88999999999999987332 2
Q ss_pred cCCCCCCcEEecccccCCCCchhHHhhcCCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCCcCCCCcchhhHh
Q 046848 183 LSHLSSLIYLDLSFSNLSKFSNWMQVLSKLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGNNLTDSIYPWLFN 262 (956)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 262 (956)
++++++|++|++++|.+++++ ++.+++|++|++++|.+.+. + +.. +++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l-~----l~~-l~~--------------------- 149 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI-D----VSH-NTQ--------------------- 149 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC-C----CTT-CTT---------------------
T ss_pred cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee-c----ccc-CCc---------------------
Confidence 777888888888888777642 45555555555555544431 1 011 122
Q ss_pred hcccccceEEecccccccCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCcc
Q 046848 263 VSSNLVELINLGSNQLQGSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTK 342 (956)
Q Consensus 263 ~~~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~ 342 (956)
| +++++++|...+.+ .+..+++|++|++++|+++++| +..+++|+.|++++|.+++
T Consensus 150 ----L-~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~--------------- 205 (457)
T 3bz5_A 150 ----L-TELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK--------------- 205 (457)
T ss_dssp ----C-CEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC---------------
T ss_pred ----C-CEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe---------------
Confidence 2 33333333222222 2444555555555555555554 4445555555555554443
Q ss_pred CCCCEEEccCCcCcccCCCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEc
Q 046848 343 TSLAWLFLDSNEITGSLPNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYL 422 (956)
Q Consensus 343 ~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 422 (956)
. .++.+++|++|++++|++++ +| +..+++|++|++++|++++.. ...+++|+.|++
T Consensus 206 ---------------~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l 261 (457)
T 3bz5_A 206 ---------------L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHC 261 (457)
T ss_dssp ---------------C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred ---------------e--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEec
Confidence 2 24455566666666666654 33 556666666666666666543 234556666665
Q ss_pred CCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccc
Q 046848 423 ADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKG 502 (956)
Q Consensus 423 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 502 (956)
+.|. |+.|++++|.+.+.+|. ..+++|+.|++++|...+
T Consensus 262 ~~n~--------------------------------------L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 262 IQTD--------------------------------------LLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp TTCC--------------------------------------CSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCC
T ss_pred cCCC--------------------------------------CCEEECCCCccCCcccc---cccccCCEEECCCCcccc
Confidence 5542 22333444444444432 234566666666666554
Q ss_pred cCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCC
Q 046848 503 KLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQF 582 (956)
Q Consensus 503 ~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 582 (956)
.+|. ...+++.+++++| ++|++|++++|++++. + ++.+
T Consensus 301 ~l~~-------------------------~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l 338 (457)
T 3bz5_A 301 LLDC-------------------------QAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHN 338 (457)
T ss_dssp EEEC-------------------------TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTC
T ss_pred eecc-------------------------CCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccC
Confidence 4442 2234555666665 6899999999999974 3 8889
Q ss_pred CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEE
Q 046848 583 DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLS 662 (956)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 662 (956)
++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..++....++....
T Consensus 339 ~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~ 405 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405 (457)
T ss_dssp TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEE
T ss_pred CcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeecc
Confidence 999999999999885 35677788999999876 24566888899999999999987765445555544
Q ss_pred ccC
Q 046848 663 LKS 665 (956)
Q Consensus 663 L~~ 665 (956)
-+.
T Consensus 406 ~~~ 408 (457)
T 3bz5_A 406 PGD 408 (457)
T ss_dssp ESS
T ss_pred CCC
Confidence 443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=339.71 Aligned_cols=362 Identities=20% Similarity=0.212 Sum_probs=220.9
Q ss_pred cCCCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccC
Q 046848 280 GSIPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL 359 (956)
Q Consensus 280 ~~~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~ 359 (956)
+..+..++.+++|++|++++|.++++| .+..+++|++|++++|.+++. | +..++ +|++|++++|.+++.
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~------~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNT------NLTYLACDSNKLTNL- 100 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCT------TCSEEECCSSCCSCC-
T ss_pred cccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-c--cccCC------CCCEEECcCCCCcee-
Confidence 334445666777777777777777765 566777777777777777654 2 44444 677777777776654
Q ss_pred CCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCC
Q 046848 360 PNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF 439 (956)
Q Consensus 360 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 439 (956)
+ ++.+++|++|++++|.+++. + ++.+++|++|++++|++++. + ++.+++|++|++++|...+.. .
T Consensus 101 ~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~~--~----- 165 (457)
T 3bz5_A 101 D-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITKL--D----- 165 (457)
T ss_dssp C-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCCC--C-----
T ss_pred e-cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCccccc--c-----
Confidence 2 66677777777777777653 2 66677777777777777664 1 456666666666666433221 1
Q ss_pred CcceEEcCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeee
Q 046848 440 QLSQVNLGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGID 519 (956)
Q Consensus 440 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ 519 (956)
+..+++|++|++++|++++. | ...+++|+.|++++|++++. +
T Consensus 166 -------------------~~~l~~L~~L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l~~~-~-------------- 207 (457)
T 3bz5_A 166 -------------------VTPQTQLTTLDCSFNKITEL-D---VSQNKLLNRLNCDTNNITKL-D-------------- 207 (457)
T ss_dssp -------------------CTTCTTCCEEECCSSCCCCC-C---CTTCTTCCEEECCSSCCSCC-C--------------
T ss_pred -------------------cccCCcCCEEECCCCcccee-c---cccCCCCCEEECcCCcCCee-c--------------
Confidence 33445555555555555432 2 11233444444444443311 0
Q ss_pred cccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccC
Q 046848 520 ISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKI 599 (956)
Q Consensus 520 ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 599 (956)
+ .. .++|++|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 208 l---------------------------------~~--l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 208 L---------------------------------NQ--NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp C---------------------------------TT--CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred c---------------------------------cc--CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 0 00 0455566666666654 33 555566666666666665432
Q ss_pred CCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCC
Q 046848 600 PDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHL 679 (956)
Q Consensus 600 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 679 (956)
++.+++|+.|++++| +|+.|++++|.+.|.+|. . ++++|+.|++++|+..+.+|. ..
T Consensus 250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~---~~ 306 (457)
T 3bz5_A 250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC---QA 306 (457)
T ss_dssp ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC---TT
T ss_pred ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c-ccccCCEEECCCCcccceecc---CC
Confidence 234555555555544 244555666665555552 1 355555555555555555442 22
Q ss_pred CCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeE
Q 046848 680 ANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKI 759 (956)
Q Consensus 680 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 759 (956)
++|+.|++++| +.|++
T Consensus 307 ~~L~~L~l~~~----------------------------------------------------------------~~L~~ 322 (457)
T 3bz5_A 307 AGITELDLSQN----------------------------------------------------------------PKLVY 322 (457)
T ss_dssp CCCSCCCCTTC----------------------------------------------------------------TTCCE
T ss_pred CcceEechhhc----------------------------------------------------------------ccCCE
Confidence 34444444443 23488
Q ss_pred EEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcc
Q 046848 760 LDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNL 839 (956)
Q Consensus 760 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 839 (956)
|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.++|. ..+..|..+++++|++
T Consensus 323 L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 323 LYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL 386 (457)
T ss_dssp EECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred EECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcE
Confidence 99999999984 3 8899999999999999986 35677778999999986 2455688899999999
Q ss_pred eecCCCC
Q 046848 840 SGKIPSG 846 (956)
Q Consensus 840 ~g~ip~~ 846 (956)
+|.||..
T Consensus 387 ~g~ip~~ 393 (457)
T 3bz5_A 387 TIAVSPD 393 (457)
T ss_dssp EEECCTT
T ss_pred EEEcChh
Confidence 9999974
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.4e-34 Score=329.61 Aligned_cols=123 Identities=30% Similarity=0.395 Sum_probs=56.2
Q ss_pred ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639 (956)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (956)
+|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 444444444444421 234445555555555555544332 4445555555555555543322 4444555555555
Q ss_pred CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693 (956)
Q Consensus 640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (956)
+|++++ ++. +. .+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 296 ~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 296 ENQLED-ISP-IS-NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp SSCCSC-CGG-GG-GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCcccC-chh-hc-CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 555542 222 22 34444444444444443332 334444444444444444
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.7e-34 Score=327.62 Aligned_cols=214 Identities=27% Similarity=0.430 Sum_probs=167.8
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|.+++. ..+..+++|+.|++++|.+.+..| ++.+++|++|++++|++++. ..+..+++|+.|++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 4666777777766643 236777778888888887776554 66678888888888887743 35777888888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|++++..| +. .+++|++|++++|++.+..+ +..+++|+.|++++|++++..+ +..+++|
T Consensus 251 ~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L------------ 311 (466)
T 1o6v_A 251 ANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL------------ 311 (466)
T ss_dssp CSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC------------
T ss_pred CCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC------------
Confidence 8888874433 33 68888888888888886544 7788899999999998886544 4444444
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|+|++|++++..| +..+++|+.|++++|++++. +.
T Consensus 312 ---------------------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 312 ---------------------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ---------------------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ---------------------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 889999999987766 78899999999999999874 57
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
++.+++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8999999999999999998887 88999999999999999984
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=337.52 Aligned_cols=235 Identities=18% Similarity=0.180 Sum_probs=162.8
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|++++..+..|..+++|+.|++++|.+.+..|..|.++++|++|++++|++++..+..|.++++|+.|+|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 45556666666666555666666666666666666666666666666666777777777666555556666667777777
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|.+.+ ++...+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..+..+++|
T Consensus 184 ~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 250 (477)
T 2id5_A 184 RHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------ 250 (477)
T ss_dssp ESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------
T ss_pred CCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------
Confidence 7776663 333333356677777777766666666655555677777777777765444455555444
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..
T Consensus 251 ---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 251 ---------------------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp ---------------------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred ---------------------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 67777777777666677777888888888888888777888
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++.
T Consensus 292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 88888888888888888877777777888888888888888877654
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6e-35 Score=317.50 Aligned_cols=258 Identities=33% Similarity=0.587 Sum_probs=243.8
Q ss_pred CceeEEECCCCCCCC--CCCccccCCCCCCEEEcCC-CcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcE
Q 046848 559 HKLDYIDLSNNLLSG--RLPDCWSQFDSLAILNLAN-NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTL 635 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 635 (956)
..++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 479999999999999 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCC-CcCEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848 636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL 714 (956)
Q Consensus 636 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 714 (956)
|++++|++++.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999999999887 799999999999999999999999998 999999999999999998887654 4
Q ss_pred cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794 (956)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 794 (956)
+.|+|++|++++.+|..+..+++|+.|+|++|++++.
T Consensus 200 -------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 200 -------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp -------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred -------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 8999999999999999999999999999999999977
Q ss_pred CCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCCCCCCC
Q 046848 795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLPLPNKC 871 (956)
Q Consensus 795 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~~c 871 (956)
+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+| .+||.|.+ .|
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 666 89999999999999999999999999999999999999999999999888888988999999 79998876 46
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=326.83 Aligned_cols=234 Identities=19% Similarity=0.171 Sum_probs=172.5
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|.+++..+..|.++++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 45666677777766666667777777788888877777666666777788888888888887777777788888888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|...+.+|...+ ...+|++|++++|++++..+..+..+++|+.|+|++|++++..+..|..++.|
T Consensus 208 ~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------ 274 (477)
T 2id5_A 208 SHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL------------ 274 (477)
T ss_dssp ECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC------------
T ss_pred CCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC------------
Confidence 88877777777766 35678888888888875444567788888888888888877666666665555
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|+|++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus 275 ---------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 275 ---------------------------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp ---------------------------------------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ---------------------------------------CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 77888888888877888888888888888888888766677
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
|..+++|+.|+|++|++++..+.. .-...+..+++..+...|.-|.
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp BSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred cCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCceeCCch
Confidence 788888888888888887543321 1112334455667777776664
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-32 Score=306.03 Aligned_cols=328 Identities=20% Similarity=0.229 Sum_probs=218.0
Q ss_pred CCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEcCCCCCCCCCchhhhcccceeEE
Q 046848 389 LVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNLGSCKIGPRFPKWLRNQNQILSL 468 (956)
Q Consensus 389 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 468 (956)
+++++.|++++|.++...+. .+..+++|++|++++|.++...+..+..+.+|++|++++|.+.+..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChh-HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34555555555555543332 34555555555555555554444444455555555555555555555556666666666
Q ss_pred EeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceeeecCCCCCCCCceeeCCCCcCcc
Q 046848 469 DISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSG 548 (956)
Q Consensus 469 ~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~ 548 (956)
++++|++++ +|...+..+
T Consensus 123 ~L~~n~l~~-l~~~~~~~l------------------------------------------------------------- 140 (390)
T 3o6n_A 123 VLERNDLSS-LPRGIFHNT------------------------------------------------------------- 140 (390)
T ss_dssp ECCSSCCCC-CCTTTTTTC-------------------------------------------------------------
T ss_pred ECCCCccCc-CCHHHhcCC-------------------------------------------------------------
Confidence 666665552 222211112
Q ss_pred ccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCcccc
Q 046848 549 SISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFT 628 (956)
Q Consensus 549 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 628 (956)
++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+++|+.|++++|.+++. .
T Consensus 141 ----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~ 202 (390)
T 3o6n_A 141 ----------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----A 202 (390)
T ss_dssp ----------TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----E
T ss_pred ----------CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----C
Confidence 4566666666666666666677777777777777777653 245567777777777777642 2
Q ss_pred CCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcc
Q 046848 629 NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTH 708 (956)
Q Consensus 629 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 708 (956)
..++|+.|++++|.+. .+|.. ..++|++|++++|++++. ..+..+++|++|++++|.+++..|..+..+++|
T Consensus 203 ~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-- 274 (390)
T 3o6n_A 203 IPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-- 274 (390)
T ss_dssp CCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC--
T ss_pred CCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC--
Confidence 3356778888888777 45543 246788888888888753 467778888888888888887777777666655
Q ss_pred cccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccc
Q 046848 709 EKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSR 788 (956)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 788 (956)
+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 275 -------------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 275 -------------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp -------------------------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred -------------------------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence 778888888874 566667888999999999
Q ss_pred ccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC
Q 046848 789 NTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN 860 (956)
Q Consensus 789 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 860 (956)
|+++ .+|..++.+++|+.|++++|+++.. | +..+++|+.|++++|++.|.... ..+..+....+.++
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~ 371 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDA 371 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCC
T ss_pred Ccce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhccccc
Confidence 9998 6788888899999999999999854 3 67788999999999999987533 12333333334444
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-32 Score=322.45 Aligned_cols=237 Identities=22% Similarity=0.242 Sum_probs=184.0
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|.+++..|..|..+++|+.|++++|.+++. .++.+++|+.|++++|.+++. ...++|+.|++
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l 218 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA 218 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEEC
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeec
Confidence 5677777777777777777777788888888888887754 245577788888888877642 33457888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|.+. .+|..+ .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|
T Consensus 219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------------ 280 (597)
T 3oja_B 219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------ 280 (597)
T ss_dssp CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC------------
T ss_pred cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC------------
Confidence 888887 555433 3578888888888876 3578888888889999888888888887776666
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..
T Consensus 281 ---------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 281 ---------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp ---------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred ---------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence 788899998885 5777778899999999999998 68888
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCC-CCCCCC
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGN-ELCGLP 866 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~ 866 (956)
++.+++|+.|+|++|++++.. +..++.|+.|++++|+++|.++. ..+..+....+.++ ..|+.+
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred cccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 999999999999999998653 66788999999999999998643 24555566667777 777753
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.1e-30 Score=287.20 Aligned_cols=215 Identities=26% Similarity=0.369 Sum_probs=145.9
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence 4555666666644433332 6666777777777777664433 6667777777777777764333 667777777777
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|.+.+ ++. +. .+++|++|++++|++++..+ +..+++|+.|++++|.+++. ..+..+++
T Consensus 207 ~~n~l~~-~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~------------- 266 (347)
T 4fmz_A 207 YVNQITD-ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTK------------- 266 (347)
T ss_dssp CSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT-------------
T ss_pred ccCCCCC-Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCC-------------
Confidence 7777763 333 33 57777777777777764433 67777888888888877653 23333333
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
|+.|++++|++++. ..+..+++|+.|+|++|++++..|..
T Consensus 267 --------------------------------------L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 267 --------------------------------------LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp --------------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred --------------------------------------cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 37788888888754 35777888888888888888777788
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcce
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 840 (956)
++.+++|+.|++++|++++..| +..+++|++||+++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888888888887666 777888888888888774
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.9e-30 Score=286.05 Aligned_cols=307 Identities=25% Similarity=0.361 Sum_probs=199.1
Q ss_pred cCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCCCCCC
Q 046848 286 FGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPNFGGF 365 (956)
Q Consensus 286 l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~~~l 365 (956)
+..+++|++|+++++.+..+|. +..+++|++|++++|.+++..+ +..++ +|++|++++|.+++ ++.+..+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~------~L~~L~L~~n~i~~-~~~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLV------KLTNLYIGTNKITD-ISALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEEECCSSCCCC-CGGGTTC
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCC------cCCEEEccCCcccC-chHHcCC
Confidence 3455677777777777776653 6667777777777777665433 55555 67777777766664 3446666
Q ss_pred CCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEE
Q 046848 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN 445 (956)
Q Consensus 366 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 445 (956)
++|++|++++|.+.+..+ +..+++|++|++++|.....++. +..+++|++|++++|.+.....
T Consensus 110 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~------------- 172 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP------------- 172 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------------
T ss_pred CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh-------------
Confidence 677777777776664332 66667777777777754444433 5666666666666665543221
Q ss_pred cCCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeeccccee
Q 046848 446 LGSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQF 525 (956)
Q Consensus 446 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l 525 (956)
+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++..+
T Consensus 173 -------------~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-------------------- 216 (347)
T 4fmz_A 173 -------------IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP-------------------- 216 (347)
T ss_dssp -------------GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred -------------hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCch--------------------
Confidence 3344445555555554443322 2233445555555544432111
Q ss_pred eecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCC
Q 046848 526 EGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGF 605 (956)
Q Consensus 526 ~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 605 (956)
... .++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..
T Consensus 217 ---------------------------~~~--~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 217 ---------------------------VAN--MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp ---------------------------GGG--CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ---------------------------hhc--CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 000 1567777777777775433 77888888888888888753 45778
Q ss_pred CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEE
Q 046848 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL 685 (956)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 685 (956)
+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+. .+++|++|++++|++++..| +..+++|+.|
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhcccee
Confidence 88888888888888854 4578888899999999988866666665 68899999999999887655 7788899999
Q ss_pred eccCCcCC
Q 046848 686 DLSSNNIS 693 (956)
Q Consensus 686 ~Ls~N~l~ 693 (956)
++++|+|+
T Consensus 339 ~l~~N~i~ 346 (347)
T 4fmz_A 339 DFANQVIK 346 (347)
T ss_dssp SSSCC---
T ss_pred ehhhhccc
Confidence 99999875
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-30 Score=291.83 Aligned_cols=309 Identities=19% Similarity=0.200 Sum_probs=202.8
Q ss_pred CCCCcEEECCCCcCcccccc-ccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCC
Q 046848 289 MPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFS 366 (956)
Q Consensus 289 l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~ 366 (956)
++++++|++++|.++.+|.. +..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..|. ++.++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC------CcCEEECCCCCCCcCCHHHhcCCC
Confidence 45666666666666665543 45566666666666666554444455544 555555555555544443 45555
Q ss_pred CCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEc
Q 046848 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNL 446 (956)
Q Consensus 367 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 446 (956)
+|++|++++|.++...+..+..+++|++|++++|++++..+. .+..+++|++|++++|.++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~------------------ 178 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLT------------------ 178 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCS------------------
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCC------------------
Confidence 555555555555433333344455555555555555444333 2344444444444444443
Q ss_pred CCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceee
Q 046848 447 GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFE 526 (956)
Q Consensus 447 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~ 526 (956)
.. .+..+++|+.|++++|.+++.. ..++|++|++++|.+.
T Consensus 179 ------~~---~~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~------------------------- 218 (390)
T 3o6n_A 179 ------HV---DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSIN------------------------- 218 (390)
T ss_dssp ------BC---CGGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCC-------------------------
T ss_pred ------cc---ccccccccceeecccccccccC------CCCcceEEECCCCeee-------------------------
Confidence 22 1333455555666665554321 1234555555555544
Q ss_pred ecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCC
Q 046848 527 GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFL 606 (956)
Q Consensus 527 g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 606 (956)
...... .++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..|..+
T Consensus 219 ---------------------~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 219 ---------------------VVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp ---------------------EEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ---------------------eccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 211111 15788999999999864 578899999999999999999889999999
Q ss_pred CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEe
Q 046848 607 KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD 686 (956)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (956)
++|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+. .+++|++|++++|+++.. + +..+++|+.|+
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 999999999999995 5666788999999999999998 8888887 699999999999999854 3 77889999999
Q ss_pred ccCCcCCCC
Q 046848 687 LSSNNISGI 695 (956)
Q Consensus 687 Ls~N~l~~~ 695 (956)
+++|++++.
T Consensus 346 l~~N~~~~~ 354 (390)
T 3o6n_A 346 LSHNDWDCN 354 (390)
T ss_dssp CCSSCEEHH
T ss_pred cCCCCccch
Confidence 999999864
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.6e-30 Score=303.26 Aligned_cols=309 Identities=19% Similarity=0.201 Sum_probs=203.2
Q ss_pred CCCCcEEECCCCcCcccccc-ccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccCCC-CCCCC
Q 046848 289 MPSLNTLFLASNQFREIPKS-LGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSLPN-FGGFS 366 (956)
Q Consensus 289 l~~L~~L~Ls~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~l~ 366 (956)
+.+++.+++++|.+..+|.. +..+++|++|+|++|.+++..+..+..++ +|++|+|++|.+++..|. |+.++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH------TIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC------CCCEEECCCCcCCCCCHHHHcCCC
Confidence 34566666666666665532 45555666666666655555444555544 555555555555544443 45555
Q ss_pred CCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEEc
Q 046848 367 SLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVNL 446 (956)
Q Consensus 367 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 446 (956)
+|++|++++|.+++..+..++.+++|++|++++|.+++..+.. +..+++|++|++++|.+++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~----------------- 185 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTH----------------- 185 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSB-----------------
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCC-----------------
Confidence 5555555555555433333445555555555555554444332 3444444444444444432
Q ss_pred CCCCCCCCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccceee
Q 046848 447 GSCKIGPRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSNQFE 526 (956)
Q Consensus 447 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n~l~ 526 (956)
.. +..+++|+.|++++|.+++.. ..++|+.|++++|.++
T Consensus 186 -------~~---~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~------------------------- 224 (597)
T 3oja_B 186 -------VD---LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSIN------------------------- 224 (597)
T ss_dssp -------CC---GGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCC-------------------------
T ss_pred -------cC---hhhhhhhhhhhcccCcccccc------CCchhheeeccCCccc-------------------------
Confidence 21 233455555555555554321 1224555555555543
Q ss_pred ecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCC
Q 046848 527 GPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFL 606 (956)
Q Consensus 527 g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 606 (956)
...+... ++|+.|++++|.+++ +..+..+++|+.|++++|.+.+.+|..|+.+
T Consensus 225 ---------------------~~~~~~~----~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 225 ---------------------VVRGPVN----VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ---------------------EEECSCC----SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ---------------------ccccccC----CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 2111111 578899999999986 4678899999999999999999999999999
Q ss_pred CCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEe
Q 046848 607 KNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILD 686 (956)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (956)
++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|.++. .+++|++|+|++|++.+. | +..+++|+.|+
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~ 351 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 351 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEE
Confidence 999999999999996 5777788999999999999999 8998887 699999999999999854 3 67789999999
Q ss_pred ccCCcCCCC
Q 046848 687 LSSNNISGI 695 (956)
Q Consensus 687 Ls~N~l~~~ 695 (956)
+++|++++.
T Consensus 352 l~~N~~~~~ 360 (597)
T 3oja_B 352 LSHNDWDCN 360 (597)
T ss_dssp CCSSCEEHH
T ss_pred eeCCCCCCh
Confidence 999999865
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7e-33 Score=320.08 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=43.8
Q ss_pred CceeEEECCCCCCCCC----CCccccCCCCCCEEEcCCCcccccC-----CCCcCCCCCcCEEEccCceeeee----CCc
Q 046848 559 HKLDYIDLSNNLLSGR----LPDCWSQFDSLAILNLANNSFFGKI-----PDSIGFLKNLQSLSLYNNRLTGE----LPS 625 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~ 625 (956)
++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|+++.. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3566666666666542 3444555556666666666554321 11122345555555555555532 344
Q ss_pred cccCCCCCcEEecCCcccc
Q 046848 626 FFTNGSQLTLMDLGKNGLS 644 (956)
Q Consensus 626 ~~~~l~~L~~L~Ls~N~l~ 644 (956)
.+..+++|++|++++|.+.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHCTTCCEEECTTCCCH
T ss_pred HHhhCCCcceEECCCCCCc
Confidence 4444555555555555554
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-32 Score=317.64 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=22.8
Q ss_pred CCCEEEeecccccc----ccchhhcCCCCCCEEECcCccCccc
Q 046848 367 SLKRLSIANNRLNG----TINKSVGQLVKLESLFLHNNSLRGV 405 (956)
Q Consensus 367 ~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~ 405 (956)
+|++|++++|.++. .++..+..+++|++|++++|.+++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 45566666665552 3455566666666666666666543
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1e-30 Score=285.85 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=86.0
Q ss_pred cCCCHHHHHHHHHHHccC-CCCCCCCCCCCCC-CCCCCCccccceeecCCCCcEEEEECCCCCCCCCCCCcccccccccc
Q 046848 34 IRCIDEEREALLAFKQGL-VDESGILSSWGRE-DEKRDCCGWRGVNCSNRTGHVYKLDLHILQVFPSPCLKGTISSSLLI 111 (956)
Q Consensus 34 ~~~~~~~~~~ll~~k~~~-~~~~~~~~~W~~~-~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~ 111 (956)
..+..+|++||++||+++ .++.+...+|... ....++|.|.|+.|+.... .+. -..
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~--------------------~l~--~~~ 79 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD--------------------LLE--DAT 79 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHH--------------------HHH--HHT
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHH--------------------HHh--ccc
Confidence 346788999999999988 4776667888310 1356899999999952100 000 012
Q ss_pred ccCCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCCCCCcE
Q 046848 112 LQHLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHLSSLIY 191 (956)
Q Consensus 112 l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 191 (956)
.+++++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|.+. ..+..++++++|++
T Consensus 80 ~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCE
Confidence 356677777777776 46776777777777777777777 67777777777777777776652 22333444444444
Q ss_pred Eeccc
Q 046848 192 LDLSF 196 (956)
Q Consensus 192 L~Ls~ 196 (956)
|++++
T Consensus 155 L~L~~ 159 (328)
T 4fcg_A 155 LSIRA 159 (328)
T ss_dssp EEEEE
T ss_pred EECCC
Confidence 44443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.3e-29 Score=275.31 Aligned_cols=220 Identities=22% Similarity=0.245 Sum_probs=167.7
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCccccCCCCCcEE
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSFFTNGSQLTLM 636 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L 636 (956)
++|++|++++|+++ .+|..+. ++|++|++++|++.+..+..|..+++|++|++++|.++ +..|..+..+ +|+.|
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 45555555555555 3333332 56777777777776555556777777777777777775 3566667776 78888
Q ss_pred ecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccc
Q 046848 637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTL 716 (956)
Q Consensus 637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~ 716 (956)
++++|+++ .+|..++ ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 178 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------- 243 (332)
T 2ft3_A 178 RISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL---------- 243 (332)
T ss_dssp BCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC----------
T ss_pred ECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC----------
Confidence 88888887 5776543 688888999999888777888899999999999999988777777766665
Q ss_pred cccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCC
Q 046848 717 ISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQIT 796 (956)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 796 (956)
+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+
T Consensus 244 -----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 244 -----------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp -----------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred -----------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 88999999998 788889999999999999999997777
Q ss_pred ccccC------CCCCCEEECCCCccC--cCCcccccCCCCCCeEECcCCc
Q 046848 797 PKIGQ------LKSLDFLDLSRNQFF--GSIPSSLSQLSRLSVMDLSYNN 838 (956)
Q Consensus 797 ~~l~~------l~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~L~ls~N~ 838 (956)
..|.. ..+|+.|++++|++. +..|..+..++.|+.+++++|+
T Consensus 282 ~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77765 367899999999988 6788889999999999999885
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.1e-29 Score=271.67 Aligned_cols=220 Identities=23% Similarity=0.245 Sum_probs=149.3
Q ss_pred ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceee--eeCCccccCCCCCcEEe
Q 046848 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLT--GELPSFFTNGSQLTLMD 637 (956)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~ 637 (956)
+|++|++++|+++ .+|..+. ++|++|++++|++.+..+..|.++++|++|++++|.++ +..+..+.++++|+.|+
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 4444444444444 2333222 45666666666666555555666666666666666664 25566666777777777
Q ss_pred cCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
+++|+++ .+|..++ ++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 178 l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------- 242 (330)
T 1xku_A 178 IADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL----------- 242 (330)
T ss_dssp CCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-----------
T ss_pred CCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-----------
Confidence 7777776 5665442 577888888888877777778888888888888888877666666655555
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
+.|+|++|+++ .+|..+..+++|++|+|++|++++..+.
T Consensus 243 ----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 243 ----------------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp ----------------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred ----------------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 77888888887 6777788888888888888888876666
Q ss_pred cccC------CCCCCEEECCCCccCc--CCcccccCCCCCCeEECcCCc
Q 046848 798 KIGQ------LKSLDFLDLSRNQFFG--SIPSSLSQLSRLSVMDLSYNN 838 (956)
Q Consensus 798 ~l~~------l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 838 (956)
.|.. .+.|+.|++++|++.. ..|..|..+..++.+++++|+
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6643 3678888888888863 566788888888888888874
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.3e-28 Score=268.57 Aligned_cols=268 Identities=19% Similarity=0.224 Sum_probs=160.9
Q ss_pred CCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCCCcceEE
Q 046848 366 SSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPFQLSQVN 445 (956)
Q Consensus 366 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 445 (956)
++|++|++++|.+.+..+..+..+++|++|++++|++++..+.. +..+++|++|++++|.++......+ .+|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHLVEIPPNLP---SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCCCSCCSSCC---TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcCCccCcccc---ccCCEEE
Confidence 34555555555555444444555555555555555555443332 4455555555555555542222111 4555556
Q ss_pred cCCCCCCCCCchhhhcccceeEEEeeCCCCCC--CccchhhhccCCcceEecccccccccCCCCCCCCcCCCCeeecccc
Q 046848 446 LGSCKIGPRFPKWLRNQNQILSLDISNSGISD--TVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPYRPGIDISSN 523 (956)
Q Consensus 446 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l~~~l~ls~n 523 (956)
+++|.+....+..+..+++|++|++++|.++. ..+..+.. + +|++|++++|++++ +|.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~l~~n~l~~-l~~----------------- 189 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLRISEAKLTG-IPK----------------- 189 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCBCCSSBCSS-CCS-----------------
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEECcCCCCCc-cCc-----------------
Confidence 66666555555566667777777777776643 33332222 1 45555555554442 111
Q ss_pred eeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCc
Q 046848 524 QFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSI 603 (956)
Q Consensus 524 ~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 603 (956)
... ++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+
T Consensus 190 ----------------------------~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 190 ----------------------------DLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp ----------------------------SSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred ----------------------------ccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 000 467777777777777766777778888888888888877777777
Q ss_pred CCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhc------CccCcEEEccCCccc--ccCCcc
Q 046848 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEG------LVNLVVLSLKSNKFN--GSIPLQ 675 (956)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~------l~~L~~L~L~~N~l~--~~~p~~ 675 (956)
..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|...+.. ..+|+.|++++|++. +..|..
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccccccCccc
Confidence 77888888888888877 66777777888888888888887 454433322 356777888888776 456667
Q ss_pred ccCCCCcCEEeccCCc
Q 046848 676 LCHLANVQILDLSSNN 691 (956)
Q Consensus 676 l~~l~~L~~L~Ls~N~ 691 (956)
+..+++|+.+++++|+
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 7777888888887764
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.9e-28 Score=265.18 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=103.3
Q ss_pred CceeEEECCCCCCCC--CCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEE
Q 046848 559 HKLDYIDLSNNLLSG--RLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLM 636 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (956)
++|++|++++|.++. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|++++..|..|..+++|+.|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 567778888887753 566777888888888888888874 555443 778888888888887777788888888888
Q ss_pred ecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcc
Q 046848 637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFN 701 (956)
Q Consensus 637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 701 (956)
++++|++++..+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 222 ~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 222 GLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp ECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 8888888754444554 6788888888888887 6777777888888888888888766555554
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.4e-28 Score=264.09 Aligned_cols=235 Identities=23% Similarity=0.265 Sum_probs=205.1
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccccc--CCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEE
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK--IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLM 636 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 636 (956)
+++++|++++|++++..+..|.++++|++|++++|+++.. .|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 5789999999999865556689999999999999998733 3666778999999999999998 467779999999999
Q ss_pred ecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCC-CcChhccccccCcccccCccc
Q 046848 637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISG-IIPKCFNNFTAMTHEKGSNLT 715 (956)
Q Consensus 637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~ 715 (956)
++++|++++..+...+..+++|++|++++|++.+..|..+..+++|++|++++|.+++ ..|..+..+++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence 9999999843332334479999999999999998888889999999999999999987 567666666555
Q ss_pred ccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccC
Q 046848 716 LISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI 795 (956)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 795 (956)
++|+|++|++++..|..+..+++|+.|+|++|++++..
T Consensus 178 ------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 178 ------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp ------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred ------------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 89999999999888999999999999999999999887
Q ss_pred CccccCCCCCCEEECCCCccCcCCcccccCCC-CCCeEECcCCcceecCCC
Q 046848 796 TPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS-RLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 796 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~ 845 (956)
+..+..+++|+.|||++|++++.+|..+..++ +|++|++++|+++|.++.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 88899999999999999999999999999984 899999999999998653
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.7e-28 Score=266.57 Aligned_cols=226 Identities=21% Similarity=0.287 Sum_probs=206.1
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
..++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 68999999999998 78888899999999999999999 88999999999999999999999 78999999999999999
Q ss_pred CCccccccCChhHh--------hcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccc
Q 046848 639 GKNGLSGEIPTWIG--------EGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEK 710 (956)
Q Consensus 639 s~N~l~~~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~ 710 (956)
++|++.+.+|..+. .++++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..+++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---- 231 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---- 231 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC----
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC----
Confidence 99999989998774 14899999999999998 788899999999999999999985 55566666655
Q ss_pred cCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccc
Q 046848 711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT 790 (956)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 790 (956)
++|+|++|++.+.+|..++.+++|+.|+|++|+
T Consensus 232 -----------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 232 -----------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp -----------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred -----------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 889999999999999999999999999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcce
Q 046848 791 LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLS 840 (956)
Q Consensus 791 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 840 (956)
+.+.+|..++.+++|+.|+|++|++.+.+|+.++++++|+.+++..|.+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999977654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-27 Score=274.72 Aligned_cols=233 Identities=22% Similarity=0.222 Sum_probs=207.8
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
+++++|++++|++++..+..|.++++|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 67899999999999888999999999999999999999988899999999999999999999888888999999999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccC-CccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI-PLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
++|+++ .+|...+..+++|++|++++|+..+.+ +..+..+++|+.|+|++|++++. | .+..++
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~------------- 218 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLV------------- 218 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCT-------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccc-------------
Confidence 999998 777766668999999999995444444 45688999999999999999854 3 233333
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
.|+.|+|++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus 219 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 219 --------------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp --------------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred --------------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 448999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
.|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 999999999999999999988888899999999999999999998753
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=270.56 Aligned_cols=258 Identities=21% Similarity=0.217 Sum_probs=171.9
Q ss_pred CCCCceeeCCCCcCccccch-hhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCE
Q 046848 533 PLNASFLNLSKNKFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQS 611 (956)
Q Consensus 533 ~~~l~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 611 (956)
+.+++.|++++|++++..+. +... ++|++|++++|++++..|..|.++++|++|++++|++++..+..|+++++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 34566666666666554431 2222 56666666666666655666666666666666666666544444666666666
Q ss_pred EEccCceeeeeCC-ccccCCCCCcEEecCCcc-ccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccC
Q 046848 612 LSLYNNRLTGELP-SFFTNGSQLTLMDLGKNG-LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689 (956)
Q Consensus 612 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 689 (956)
|++++|++++..+ ..+..+++|++|++++|+ +. .++...+.++++|++|++++|++.+..|..+..+++|++|++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 6666666663333 356666666666666663 33 44332223566666666666666666666666666666666666
Q ss_pred CcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCC
Q 046848 690 NNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG 769 (956)
Q Consensus 690 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 769 (956)
|+++...+..+. .++.|+.|++++|++++
T Consensus 208 n~l~~~~~~~~~---------------------------------------------------~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 208 KQHILLLEIFVD---------------------------------------------------VTSSVECLELRDTDLDT 236 (353)
T ss_dssp SCSTTHHHHHHH---------------------------------------------------HTTTEEEEEEESCBCTT
T ss_pred Cccccchhhhhh---------------------------------------------------hcccccEEECCCCcccc
Confidence 666432222222 23455999999999998
Q ss_pred CCchhhh---ccccCCEEEcccccccc----cCCccccCCCCCCEEECCCCccCcCCccc-ccCCCCCCeEECcCCccee
Q 046848 770 EVPEEIM---DLAGLIALNLSRNTLTG----QITPKIGQLKSLDFLDLSRNQFFGSIPSS-LSQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 770 ~~p~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g 841 (956)
..+..+. ....++.++|++|.+++ .+|+.++.+++|+.||+++|+++. +|.. |..+++|++|++++|++.|
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence 7665543 46678889999998886 478889999999999999999994 5555 6899999999999999999
Q ss_pred cCCC
Q 046848 842 KIPS 845 (956)
Q Consensus 842 ~ip~ 845 (956)
.+|.
T Consensus 316 ~~~~ 319 (353)
T 2z80_A 316 SCPR 319 (353)
T ss_dssp CHHH
T ss_pred cCCC
Confidence 9874
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9e-28 Score=257.80 Aligned_cols=231 Identities=22% Similarity=0.161 Sum_probs=203.5
Q ss_pred ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639 (956)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (956)
.-..++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 12 PKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp SSCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 3467888888888 456543 4689999999999998888889999999999999999998889999999999999999
Q ss_pred Ccc-ccccC-ChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 640 KNG-LSGEI-PTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 640 ~N~-l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
+|+ +. .+ |..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|
T Consensus 89 ~n~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 155 (285)
T 1ozn_A 89 DNAQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL----------- 155 (285)
T ss_dssp SCTTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred CCCCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-----------
Confidence 998 66 55 45554 79999999999999998888889999999999999999997777667766665
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
++|+|++|++++..+..+..+++|+.|+|++|++++..|.
T Consensus 156 ----------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 156 ----------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ----------------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 8899999999977777899999999999999999999899
Q ss_pred cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848 798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 846 (956)
.++.+++|+.|++++|++++..+..+..+++|++|++++|++.|.++..
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 9999999999999999999888888999999999999999999987653
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=270.62 Aligned_cols=232 Identities=23% Similarity=0.240 Sum_probs=203.5
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57889999999999888888999999999999999999888888999999999999999999777778999999999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccC-CccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSI-PLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
++|+++ .+|...+..+++|++|++++|+..+.+ +..+.++++|+.|++++|+++. +| .+..++
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~------------- 207 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLI------------- 207 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCS-------------
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCc-------------
Confidence 999998 666655558999999999985544444 4578899999999999999873 33 233333
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
.|+.|||++|++++..|..|.++++|+.|+|++|++++..+.
T Consensus 208 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 208 --------------------------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp --------------------------------------SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred --------------------------------------ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 448999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCC
Q 046848 798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIP 844 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 844 (956)
.|..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999999888899999999999999999999875
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.8e-29 Score=301.38 Aligned_cols=92 Identities=13% Similarity=0.014 Sum_probs=44.5
Q ss_pred ccCCCCCCEEEcCCCc--ccccCCCCcC-CCCCcCEEEccCceeee-eCCccccCCCCCcEEecCCccccccCChhHhhc
Q 046848 579 WSQFDSLAILNLANNS--FFGKIPDSIG-FLKNLQSLSLYNNRLTG-ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEG 654 (956)
Q Consensus 579 ~~~l~~L~~L~Ls~N~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 654 (956)
+.++++|+.|++++|. +++..+..+. .+++|++|++++|++++ .++..+.++++|++|+|++|.+++.....+...
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3345555555554322 3322222222 24555555555555553 233344555566666666666544333333334
Q ss_pred CccCcEEEccCCcccc
Q 046848 655 LVNLVVLSLKSNKFNG 670 (956)
Q Consensus 655 l~~L~~L~L~~N~l~~ 670 (956)
+++|++|++++|++++
T Consensus 512 l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASM 527 (592)
T ss_dssp CSSCCEEEEESCBCCT
T ss_pred cCccCeeECcCCcCCH
Confidence 5666666666666554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-27 Score=258.94 Aligned_cols=275 Identities=23% Similarity=0.280 Sum_probs=227.7
Q ss_pred eeecccceeeecCCCCCCCCceeeCCCCcCccccchh-hhccCCceeEEECCCCCCCCC--CCccccCCCCCCEEEcCCC
Q 046848 517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFL-CSITGHKLDYIDLSNNLLSGR--LPDCWSQFDSLAILNLANN 593 (956)
Q Consensus 517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N 593 (956)
.++++++.++......+.+++.|++++|.++...+.. ... ++|++|++++|.++.. .+..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhcc--ccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 3445555544433334568899999999988655433 233 7999999999999843 3677788999999999999
Q ss_pred cccccCCCCcCCCCCcCEEEccCceeeeeCC-ccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccc-c
Q 046848 594 SFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNG-S 671 (956)
Q Consensus 594 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~ 671 (956)
.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. ++++|++|++++|.+.+ .
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccccc
Confidence 998 467779999999999999999997665 6899999999999999999966666665 79999999999999987 6
Q ss_pred CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceec
Q 046848 672 IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQ 751 (956)
Q Consensus 672 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (956)
+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------- 201 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------------------------------------------- 201 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------------------------------
Confidence 78899999999999999999998888888776666
Q ss_pred ccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC-CCCEEECCCCccCcCCc--ccccCCCC
Q 046848 752 STLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK-SLDFLDLSRNQFFGSIP--SSLSQLSR 828 (956)
Q Consensus 752 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~ip--~~l~~l~~ 828 (956)
+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|++|+|++|++++..+ ....-+..
T Consensus 202 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 202 ------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp ------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred ------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 8999999999988888899999999999999999999999999985 99999999999987543 11223445
Q ss_pred CCeEECcCCcceecCCCC
Q 046848 829 LSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 829 L~~L~ls~N~l~g~ip~~ 846 (956)
.+.+.+..+.+.|..|..
T Consensus 276 ~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 276 QRQLLVEVERMECATPSD 293 (306)
T ss_dssp TGGGBSCGGGCBEEESGG
T ss_pred hhhhhccccccccCCchh
Confidence 566777888899988863
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.1e-28 Score=294.41 Aligned_cols=379 Identities=14% Similarity=0.079 Sum_probs=185.6
Q ss_pred CCCCCEEEeeccccccccchhhcC-CC-CCCEEECcCcc-CccccCHHhhhCCCCCCEEEcCCCccccccc----CCcCC
Q 046848 365 FSSLKRLSIANNRLNGTINKSVGQ-LV-KLESLFLHNNS-LRGVISEAFLSNLSNLTILYLADNSLTLEFS----HDWIP 437 (956)
Q Consensus 365 l~~L~~L~Ls~n~l~~~~~~~l~~-l~-~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~ 437 (956)
+++|++|++++|.+++..+..+.. ++ +|++|++++|. +...........+++|++|+|++|.+++... .....
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 444555555555444443333333 22 25555555543 1111111122345555555555554433211 11123
Q ss_pred CCCcceEEcCCCCCC----CCCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcC
Q 046848 438 PFQLSQVNLGSCKIG----PRFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHP 513 (956)
Q Consensus 438 ~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 513 (956)
+++|+.|++++|.+. ..++..+.++++|++|++++|.+.+ ++.. ....++|++|++++.......+....
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~---- 264 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYM---- 264 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSS----
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHH----
Confidence 344555555555544 2334455667777777777777665 4433 33456777777765221100000000
Q ss_pred CCCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCC
Q 046848 514 YRPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANN 593 (956)
Q Consensus 514 l~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (956)
.+. .+ ++|+.|+++++.. +.+|..+..+++|++|++++|
T Consensus 265 --------------~l~-~~-------------------------~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 265 --------------NLV-FP-------------------------RKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp --------------CCC-CC-------------------------TTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred --------------Hhh-cc-------------------------ccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence 000 01 4555666655422 245555666666666766666
Q ss_pred cccccCC-CCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC-----------CccccccCChhHhhcCccCcEE
Q 046848 594 SFFGKIP-DSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG-----------KNGLSGEIPTWIGEGLVNLVVL 661 (956)
Q Consensus 594 ~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls-----------~N~l~~~ip~~~~~~l~~L~~L 661 (956)
.+++... ..+..+++|++|+++++-..+.++..+..+++|++|+++ .|.+++.-...+..++++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 6543322 224566667777666332223334444556667777776 2455433233333356677777
Q ss_pred EccCCcccccCCccccC-CCCcCEEecc----CCcCCCC-----cChhccccccCcccccCccccccccccccccccccc
Q 046848 662 SLKSNKFNGSIPLQLCH-LANVQILDLS----SNNISGI-----IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKT 731 (956)
Q Consensus 662 ~L~~N~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (956)
+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..+.++++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~-------------------------- 437 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK-------------------------- 437 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT--------------------------
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC--------------------------
Confidence 77666666655555544 6667777774 4555542 1112222222
Q ss_pred ccccccceeEEecCccceecccccceeEEEcCCCC--CCCCCchhhhc-cccCCEEEcccccccc-cCCccccCCCCCCE
Q 046848 732 TKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK--LGGEVPEEIMD-LAGLIALNLSRNTLTG-QITPKIGQLKSLDF 807 (956)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~-l~~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~ 807 (956)
|+.|+|++|. +++..+..+.. +++|+.|+|++|++++ .++..+..+++|++
T Consensus 438 -------------------------L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 438 -------------------------LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp -------------------------CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred -------------------------CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence 3555555322 44444444433 5556666666666554 23333455566666
Q ss_pred EECCCCccCcC-CcccccCCCCCCeEECcCCccee
Q 046848 808 LDLSRNQFFGS-IPSSLSQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 808 L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g 841 (956)
|+|++|++++. ++..+..+++|++|++++|+++.
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 66666665433 22333445566666666666543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.7e-27 Score=254.02 Aligned_cols=235 Identities=24% Similarity=0.275 Sum_probs=204.7
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCce-eeeeCCccccCCCCCcEEe
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR-LTGELPSFFTNGSQLTLMD 637 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~ 637 (956)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+ ++...|..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 689999999999998777889999999999999999998889999999999999999997 8877788999999999999
Q ss_pred cCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 638 LGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 638 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
+++|++++..|..+. ++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 179 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL----------- 179 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence 999999955555554 79999999999999997777779999999999999999997766667766655
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
+.|+|++|++++..|..+..+++|+.|+|++|++++..+.
T Consensus 180 ----------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 180 ----------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp ----------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred ----------------------------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 8999999999999999999999999999999999987777
Q ss_pred cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848 798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 846 (956)
.+..+++|+.|++++|+++...+.. .-...++.++.+.|.+.|..|..
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred HcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 8999999999999999998765432 11233566678899999999864
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.6e-28 Score=262.12 Aligned_cols=245 Identities=20% Similarity=0.178 Sum_probs=184.4
Q ss_pred CCceeeCCCCcCccccchhhhccCCceeEEECCCCCCC-CCCCcccc-------CCCCCCEEEcCCCcccccCCCCc--C
Q 046848 535 NASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLS-GRLPDCWS-------QFDSLAILNLANNSFFGKIPDSI--G 604 (956)
Q Consensus 535 ~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~--~ 604 (956)
+++.+++++|.+ .+|.... ..|+.|++++|.++ ..+|..+. ++++|++|++++|++++.+|..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 466667777777 3333222 23777888888873 45666554 68888888888888888888776 7
Q ss_pred CCCCcCEEEccCceeeeeCCccccCC-----CCCcEEecCCccccccCChhHhhcCccCcEEEccCCccccc--CCccc-
Q 046848 605 FLKNLQSLSLYNNRLTGELPSFFTNG-----SQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGS--IPLQL- 676 (956)
Q Consensus 605 ~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~--~p~~l- 676 (956)
.+++|++|++++|++++. |..+..+ ++|++|+|++|++.+..|..+. .+++|++|++++|++.+. .|..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHH
Confidence 888888888888888876 7777766 8888888888888855445555 688888888888887765 23344
Q ss_pred -cCCCCcCEEeccCCcCCCC--cC-hhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecc
Q 046848 677 -CHLANVQILDLSSNNISGI--IP-KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQS 752 (956)
Q Consensus 677 -~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (956)
..+++|++|++++|++++. ++ ..+..++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~------------------------------------------------ 228 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARV------------------------------------------------ 228 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC------------------------------------------------
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCC------------------------------------------------
Confidence 7888899999999988732 11 1122323
Q ss_pred cccceeEEEcCCCCCCCCCc-hhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCe
Q 046848 753 TLGLVKILDLSSNKLGGEVP-EEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSV 831 (956)
Q Consensus 753 ~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 831 (956)
.|++|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++
T Consensus 229 ---~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~ 300 (312)
T 1wwl_A 229 ---QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGN 300 (312)
T ss_dssp ---CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEE
T ss_pred ---CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCE
Confidence 34889999999998775 45667889999999999998 7888777 8899999999999876 65 888999999
Q ss_pred EECcCCcceec
Q 046848 832 MDLSYNNLSGK 842 (956)
Q Consensus 832 L~ls~N~l~g~ 842 (956)
|++++|++++.
T Consensus 301 L~L~~N~l~~~ 311 (312)
T 1wwl_A 301 LSLKGNPFLDS 311 (312)
T ss_dssp EECTTCTTTCC
T ss_pred EeccCCCCCCC
Confidence 99999998763
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.1e-25 Score=258.45 Aligned_cols=248 Identities=23% Similarity=0.262 Sum_probs=215.9
Q ss_pred eeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc
Q 046848 517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF 596 (956)
Q Consensus 517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 596 (956)
.++.++..++......+.+++.|++++|++++..+..... .++|++|++++|.+++..+..|.++++|++|+|++|+++
T Consensus 58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 4455555554433334668899999999998876543222 289999999999999988899999999999999999999
Q ss_pred ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccc
Q 046848 597 GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL 676 (956)
Q Consensus 597 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l 676 (956)
+..+..|..+++|++|++++|+++...+..|.++++|+.|++++|+..+.+|...+.++++|++|++++|++++ +| .+
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~ 214 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NL 214 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CC
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cc
Confidence 88888899999999999999999988888999999999999999766668888777789999999999999985 44 58
Q ss_pred cCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccc
Q 046848 677 CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGL 756 (956)
Q Consensus 677 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (956)
..+++|+.|+|++|++++..|..|.++++|
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------------------------- 244 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSL-------------------------------------------------- 244 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTC--------------------------------------------------
T ss_pred cccccccEEECcCCcCcccCcccccCccCC--------------------------------------------------
Confidence 899999999999999999888888887766
Q ss_pred eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 818 (956)
+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++...
T Consensus 245 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 245 -KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp -CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred -CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8999999999999999999999999999999999988888899999999999999998643
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=255.72 Aligned_cols=267 Identities=19% Similarity=0.184 Sum_probs=218.4
Q ss_pred eeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848 538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN 617 (956)
Q Consensus 538 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 617 (956)
..+.+++.++..+..+. ++|++|++++|++++..+..+.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 35 ~c~~~~~~l~~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSSCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 45667777765544332 58999999999999777778999999999999999999888888999999999999999
Q ss_pred eeeeeCCccccCCCCCcEEecCCccccccCCh-hHhhcCccCcEEEccCC-cccccCCccccCCCCcCEEeccCCcCCCC
Q 046848 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPT-WIGEGLVNLVVLSLKSN-KFNGSIPLQLCHLANVQILDLSSNNISGI 695 (956)
Q Consensus 618 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 695 (956)
++++..+..|.++++|++|++++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++++.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 999766666899999999999999998 6776 44447999999999999 47766677899999999999999999988
Q ss_pred cChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhh
Q 046848 696 IPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEI 775 (956)
Q Consensus 696 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 775 (956)
.|..+..+++| ++|++++|+++...+..+
T Consensus 190 ~~~~l~~l~~L---------------------------------------------------~~L~l~~n~l~~~~~~~~ 218 (353)
T 2z80_A 190 EPKSLKSIQNV---------------------------------------------------SHLILHMKQHILLLEIFV 218 (353)
T ss_dssp CTTTTTTCSEE---------------------------------------------------EEEEEECSCSTTHHHHHH
T ss_pred CHHHHhccccC---------------------------------------------------CeecCCCCccccchhhhh
Confidence 88877766555 899999999975444445
Q ss_pred hccccCCEEEcccccccccCCcccc---CCCCCCEEECCCCccCc----CCcccccCCCCCCeEECcCCcceecCCCC--
Q 046848 776 MDLAGLIALNLSRNTLTGQITPKIG---QLKSLDFLDLSRNQFFG----SIPSSLSQLSRLSVMDLSYNNLSGKIPSG-- 846 (956)
Q Consensus 776 ~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-- 846 (956)
..+++|+.|+|++|++++..+..+. ..+.++.++|++|.+++ .+|+.+..+++|++||+++|+++ .+|..
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~ 297 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIF 297 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHH
Confidence 6799999999999999987665544 46789999999999987 47888999999999999999999 67764
Q ss_pred CcCCccccccccCCC
Q 046848 847 TQLQSFSTSMYAGNE 861 (956)
Q Consensus 847 ~~~~~~~~~~~~~n~ 861 (956)
..+..+....+.+|.
T Consensus 298 ~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 298 DRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCCCCCEEEeeCCC
Confidence 355566666677773
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=256.65 Aligned_cols=247 Identities=23% Similarity=0.245 Sum_probs=214.6
Q ss_pred eeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc
Q 046848 517 GIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF 596 (956)
Q Consensus 517 ~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 596 (956)
.++.+++.++......+.+++.|++++|++.+..+..... .++|++|+|++|.+++..+..|.++++|++|+|++|+++
T Consensus 47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSS-CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhC-CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 3444444444333334667888999999888776533222 289999999999999888899999999999999999999
Q ss_pred ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccc
Q 046848 597 GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQL 676 (956)
Q Consensus 597 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l 676 (956)
+..+..|..+++|++|++++|+++...+..|.++++|+.|+|++|+..+.++...+.++++|++|++++|+++ .+| .+
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~ 203 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NL 203 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CC
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-cc
Confidence 8777789999999999999999998888899999999999999977666888877778999999999999998 455 58
Q ss_pred cCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccc
Q 046848 677 CHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGL 756 (956)
Q Consensus 677 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (956)
..+++|+.|+|++|++++..|..|.++++|
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------------------------- 233 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHL-------------------------------------------------- 233 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTC--------------------------------------------------
T ss_pred CCCcccCEEECCCCccCccChhhhccCccC--------------------------------------------------
Confidence 899999999999999999888888877766
Q ss_pred eeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848 757 VKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 757 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 234 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 234 -QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp -CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred -CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 899999999999999999999999999999999998888889999999999999999864
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.3e-25 Score=235.65 Aligned_cols=228 Identities=22% Similarity=0.181 Sum_probs=187.0
Q ss_pred EEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcc
Q 046848 563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNG 642 (956)
Q Consensus 563 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 642 (956)
..+.++..++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555565 4555443 478889999998887777788888899999999998888777788888999999999999
Q ss_pred ccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCC-cChhccccccCcccccCccccccccc
Q 046848 643 LSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGI-IPKCFNNFTAMTHEKGSNLTLISNYY 721 (956)
Q Consensus 643 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~ 721 (956)
+++..|..+. ++++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+..+++|
T Consensus 88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L--------------- 151 (276)
T 2z62_A 88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL--------------- 151 (276)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence 8844444454 788999999999998877776788999999999999999874 57777776666
Q ss_pred ccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCC----EEEcccccccccCCc
Q 046848 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI----ALNLSRNTLTGQITP 797 (956)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~ip~ 797 (956)
+.|+|++|++++..+..+..+++|+ .|++++|++++..+.
T Consensus 152 ------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~ 195 (276)
T 2z62_A 152 ------------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (276)
T ss_dssp ------------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred ------------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc
Confidence 8899999999988888888888877 899999999965555
Q ss_pred cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848 798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 846 (956)
.+. ..+|+.|+|++|++++..+..+..+++|+.|++++|+++|.+|.-
T Consensus 196 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 196 AFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp SSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 544 458999999999999887788899999999999999999999854
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.9e-26 Score=246.32 Aligned_cols=238 Identities=22% Similarity=0.252 Sum_probs=191.4
Q ss_pred eeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848 538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN 617 (956)
Q Consensus 538 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 617 (956)
..+++++.+...+...... .++|++|++++|++++..|..+..+++|++|++++|++++..| +..+++|++|++++|
T Consensus 14 i~~ls~~~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHHHHHHHHHTT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred EeeccccchhhhHHHHhcc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 3455555554443333222 2689999999999998888899999999999999999987665 889999999999999
Q ss_pred eeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcC
Q 046848 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP 697 (956)
Q Consensus 618 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 697 (956)
++++.. ..++|++|++++|++++ ++.. .+++|++|++++|++++..+..+..+++|+.|++++|.+++..+
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred cccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 998544 23899999999999984 4432 46789999999999998888889999999999999999998766
Q ss_pred hhcc-ccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhh
Q 046848 698 KCFN-NFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIM 776 (956)
Q Consensus 698 ~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 776 (956)
..+. .++.| ++|+|++|++++. |. ..
T Consensus 162 ~~~~~~l~~L---------------------------------------------------~~L~L~~N~l~~~-~~-~~ 188 (317)
T 3o53_A 162 AELAASSDTL---------------------------------------------------EHLNLQYNFIYDV-KG-QV 188 (317)
T ss_dssp GGGGGGTTTC---------------------------------------------------CEEECTTSCCCEE-EC-CC
T ss_pred HHHhhccCcC---------------------------------------------------CEEECCCCcCccc-cc-cc
Confidence 6553 44444 8899999998855 32 33
Q ss_pred ccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848 777 DLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 777 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
.+++|+.|+|++|++++ +|+.+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++|.
T Consensus 189 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 58899999999999985 5556888999999999999998 4677888889999999999999843
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.1e-27 Score=255.08 Aligned_cols=245 Identities=25% Similarity=0.327 Sum_probs=204.4
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc-ccCCCCcC-------CCCCcCEEEccCceeeeeCCccc--c
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF-GKIPDSIG-------FLKNLQSLSLYNNRLTGELPSFF--T 628 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~--~ 628 (956)
++|+.|++++|.+ .+|..+... |+.|++++|.+. +.+|..+. ++++|++|++++|++++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 6799999999999 778766654 899999999994 56676665 78999999999999999999876 8
Q ss_pred CCCCCcEEecCCccccccCChhHhhcC-----ccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCc--Chhc-
Q 046848 629 NGSQLTLMDLGKNGLSGEIPTWIGEGL-----VNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGII--PKCF- 700 (956)
Q Consensus 629 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~- 700 (956)
.+++|++|+|++|++++. |..+. .+ ++|++|++++|++.+..|..+..+++|++|++++|++.+.+ |..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 999999999999999965 87776 46 89999999999999888899999999999999999988653 2222
Q ss_pred -cccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCC--CCc-hhhh
Q 046848 701 -NNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGG--EVP-EEIM 776 (956)
Q Consensus 701 -~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p-~~l~ 776 (956)
..++ .|++|+|++|++++ .++ ..+.
T Consensus 197 ~~~l~---------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 197 PLKFP---------------------------------------------------TLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp TTSCT---------------------------------------------------TCCEEECTTSCCCCHHHHHHHHHH
T ss_pred hccCC---------------------------------------------------CCCEEECCCCcCcchHHHHHHHHh
Confidence 3333 44899999999984 223 3446
Q ss_pred ccccCCEEEcccccccccCC-ccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccc
Q 046848 777 DLAGLIALNLSRNTLTGQIT-PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTS 855 (956)
Q Consensus 777 ~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~ 855 (956)
.+++|+.|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++++. |....+..+...
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L 301 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNL 301 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEE
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEE
Confidence 78999999999999998875 56778999999999999999 7888776 8899999999999987 665566666666
Q ss_pred cccCCCCCC
Q 046848 856 MYAGNELCG 864 (956)
Q Consensus 856 ~~~~n~l~~ 864 (956)
.+.+|.+.+
T Consensus 302 ~L~~N~l~~ 310 (312)
T 1wwl_A 302 SLKGNPFLD 310 (312)
T ss_dssp ECTTCTTTC
T ss_pred eccCCCCCC
Confidence 777776554
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-25 Score=258.90 Aligned_cols=218 Identities=24% Similarity=0.250 Sum_probs=191.5
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 589999999999999888999999999999999999998766 8999999999999999996543 389999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcc-ccccCcccccCccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFN-NFTAMTHEKGSNLTLI 717 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~~~ 717 (956)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .++.|
T Consensus 107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L----------- 171 (487)
T 3oja_A 107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----------- 171 (487)
T ss_dssp CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence 99999954443 478999999999999998898999999999999999999998887765 45555
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
+.|+|++|.+++..+ ...+++|+.|+|++|++++ +|+
T Consensus 172 ----------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~ 208 (487)
T 3oja_A 172 ----------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGP 208 (487)
T ss_dssp ----------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECG
T ss_pred ----------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCH
Confidence 899999999997633 3468999999999999996 555
Q ss_pred cccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848 798 KIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
.++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 69999999999999999996 778899999999999999999843
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1e-26 Score=253.26 Aligned_cols=222 Identities=25% Similarity=0.278 Sum_probs=172.1
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|++++|++++..+.. +++|+.|++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l 127 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL 127 (317)
T ss_dssp TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence 567777777777765443 777788888888888877433 2378888888888888665543 567888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCcccc-CCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
++|++++..|..+. .+++|++|++++|++.+..+..+. .+++|++|++++|.+++..+. ..+
T Consensus 128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l-------------- 190 (317)
T 3o53_A 128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVF-------------- 190 (317)
T ss_dssp CSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCC--------------
T ss_pred CCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--ccc--------------
Confidence 88888844444444 688888888888888877666664 688899999999988754211 112
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
+.|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|.
T Consensus 191 -------------------------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 191 -------------------------------------AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp -------------------------------------TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred -------------------------------------ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh
Confidence 344889999999995 4556899999999999999999 5788
Q ss_pred cccCCCCCCEEECCCCccC-cCCcccccCCCCCCeEECc-CCcceecCCCC
Q 046848 798 KIGQLKSLDFLDLSRNQFF-GSIPSSLSQLSRLSVMDLS-YNNLSGKIPSG 846 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~g~ip~~ 846 (956)
.+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.+.|..|..
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 9999999999999999999 8888999999999999999 55677776654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.3e-24 Score=250.76 Aligned_cols=222 Identities=27% Similarity=0.269 Sum_probs=158.8
Q ss_pred CCCceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEE
Q 046848 534 LNASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLS 613 (956)
Q Consensus 534 ~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 613 (956)
.+|+.|++++|++++... ..++|++|++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|+
T Consensus 81 ~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~ 147 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS 147 (622)
T ss_dssp TTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence 345555555555443222 11678888888888774 343 46778888888888874 4543 47788888
Q ss_pred ccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848 614 LYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693 (956)
Q Consensus 614 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (956)
+++|++++ +|. ..++|+.|++++|+++ .+|. .+++|+.|++++|++++ +|.. +++|+.|++++|.++
T Consensus 148 Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 148 VSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLPM----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT 214 (622)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCcc----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc
Confidence 88888874 343 3467888888888887 5772 46788888888888874 4432 467888888888887
Q ss_pred CCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCch
Q 046848 694 GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPE 773 (956)
Q Consensus 694 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 773 (956)
. +|..+ ++|+.|+|++|+|++ +|
T Consensus 215 ~-l~~~~------------------------------------------------------~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 215 S-LPALP------------------------------------------------------SGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp S-CCCCC------------------------------------------------------TTCCEEECCSSCCSC-CC-
T ss_pred c-cCCCC------------------------------------------------------CCCCEEEccCCccCc-CC-
Confidence 3 33211 234788899998885 55
Q ss_pred hhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 774 EIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 774 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|++++|+++|.+|.
T Consensus 238 --~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred --CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 45678889999999888 5666 6788899999999988 6788888889999999999999888765
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.8e-24 Score=252.34 Aligned_cols=188 Identities=27% Similarity=0.345 Sum_probs=144.5
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|++++ +| ..+++|+.|++
T Consensus 121 ~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~L 188 (622)
T 3g06_A 121 SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSV 188 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEEC
Confidence 567777777777774 4443 3778888888888874 343 24678888888888884 55 45678888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|+++ .+|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..++
T Consensus 189 s~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~-------------- 241 (622)
T 3g06_A 189 SDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPS-------------- 241 (622)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCT--------------
T ss_pred CCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCC--------------
Confidence 888888 5665 3568888999998887 45532 4789999999998885 34 1222
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..
T Consensus 242 -------------------------------------~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~ 279 (622)
T 3g06_A 242 -------------------------------------ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPES 279 (622)
T ss_dssp -------------------------------------TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGG
T ss_pred -------------------------------------cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHH
Confidence 3488999999998 4565 6788999999999999 78999
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCCC
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLS 827 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 827 (956)
++++++|+.|+|++|++++.+|..+..++
T Consensus 280 l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred HhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999999999999999999988877654
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.7e-24 Score=227.32 Aligned_cols=206 Identities=24% Similarity=0.294 Sum_probs=151.8
Q ss_pred CCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848 585 LAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK 664 (956)
Q Consensus 585 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 664 (956)
.+.+++++++++ .+|..+. +++++|++++|++++..+..|.++++|++|+|++|+++ .+|..++.++++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 445555555555 3443332 45666666666666555555666666666666666665 5555554456677777777
Q ss_pred CCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848 665 SNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK 744 (956)
Q Consensus 665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (956)
+|++.+..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------- 135 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------------------------------- 135 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------------
Confidence 777765555566777788888888888877666666665555
Q ss_pred CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCccccc
Q 046848 745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLS 824 (956)
Q Consensus 745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 824 (956)
++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+.
T Consensus 136 -------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 136 -------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 7788888888876666788899999999999999987777799999999999999999988777899
Q ss_pred CCCCCCeEECcCCcceecCCC
Q 046848 825 QLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 825 ~l~~L~~L~ls~N~l~g~ip~ 845 (956)
.+++|+.|++++|++.|.++.
T Consensus 203 ~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TCTTCCEEECCSSCBCCSSSS
T ss_pred cccCCCEEEecCCCeeCCCcc
Confidence 999999999999999998764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-25 Score=257.21 Aligned_cols=235 Identities=26% Similarity=0.272 Sum_probs=200.7
Q ss_pred CCCCceeeCCCCcCccccch-hhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCE
Q 046848 533 PLNASFLNLSKNKFSGSISF-LCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQS 611 (956)
Q Consensus 533 ~~~l~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 611 (956)
+.+++.|++++|.+++..+. +... ++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 44788899999988887653 3333 899999999999997665 8999999999999999986543 389999
Q ss_pred EEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCcccc-CCCCcCEEeccCC
Q 046848 612 LSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLC-HLANVQILDLSSN 690 (956)
Q Consensus 612 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N 690 (956)
|++++|.+++..+.. +++|+.|+|++|.+++..|..+. .+++|++|+|++|.+++.+|..+. .+++|+.|+|++|
T Consensus 104 L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999877654 57899999999999977777776 799999999999999998888886 7999999999999
Q ss_pred cCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCC
Q 046848 691 NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGE 770 (956)
Q Consensus 691 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 770 (956)
.+++..+. ..+ +.|+.|+|++|.+++.
T Consensus 180 ~l~~~~~~--~~l---------------------------------------------------~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 180 FIYDVKGQ--VVF---------------------------------------------------AKLKTLDLSSNKLAFM 206 (487)
T ss_dssp CCCEEECC--CCC---------------------------------------------------TTCCEEECCSSCCCEE
T ss_pred cccccccc--ccC---------------------------------------------------CCCCEEECCCCCCCCC
Confidence 99866321 123 3448999999999975
Q ss_pred CchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC-cCCcccccCCCCCCeEECc
Q 046848 771 VPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF-GSIPSSLSQLSRLSVMDLS 835 (956)
Q Consensus 771 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls 835 (956)
.| .+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|+++ +.+|..+..++.|+.++++
T Consensus 207 ~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 44 59999999999999999995 8888999999999999999998 7788888989888888886
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=6.8e-27 Score=279.24 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=103.3
Q ss_pred CCCCCCEEEecCCCCCCCCCCccccccccCCccEEEcCCC-cCCCC-cchhhHhhcccccceEEecccccccCCCccc--
Q 046848 211 KLDSLKALYLISCDLPPTIPSSDLYLNSSTSLEVIVILGN-NLTDS-IYPWLFNVSSNLVELINLGSNQLQGSIPEAF-- 286 (956)
Q Consensus 211 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~l~~~~~~L~~~L~Ls~n~l~~~~p~~l-- 286 (956)
.+++|++|++++|.+.+..+ ..+...+++|++|++++| .+.+. ++.....++. | ++|++++|.+++..+..+
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-L-~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCL--ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN-L-KELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHH--HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT-C-CEEECTTCEEECCCGGGGGG
T ss_pred hCCCCCeEEeeCcEEcHHHH--HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC-C-CEEeCcCCccCCcchHHHHH
Confidence 44555555555554433222 222212355555555555 22222 2222223444 5 666666666555433333
Q ss_pred --CCCCCCcEEECCCCc--Ccc--ccccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCc------
Q 046848 287 --GHMPSLNTLFLASNQ--FRE--IPKSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNE------ 354 (956)
Q Consensus 287 --~~l~~L~~L~Ls~n~--l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~------ 354 (956)
..+++|++|++++|. ++. ++..+..+++|++|++++|...+.++..+..++ +|++|+++.+.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~------~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP------QLEELGTGGYTAEVRPD 252 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT------TCSEEECSBCCCCCCHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC------cceEcccccccCccchh
Confidence 355677777777775 221 223334567777777777733333666666666 77777755443
Q ss_pred -CcccCCCCCCCCCCCEE-EeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCC
Q 046848 355 -ITGSLPNFGGFSSLKRL-SIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADN 425 (956)
Q Consensus 355 -l~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 425 (956)
+.+..+.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++|
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 22222224555666666 2332221 2333334455666666666666554433333455666666666655
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=5.7e-26 Score=271.22 Aligned_cols=384 Identities=13% Similarity=0.113 Sum_probs=182.7
Q ss_pred CCCCCCEEEeeccccccccchhhc-CCCCCCEEECcCc-cCccccCHHhhhCCCCCCEEEcCCCcccccccCCc----CC
Q 046848 364 GFSSLKRLSIANNRLNGTINKSVG-QLVKLESLFLHNN-SLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDW----IP 437 (956)
Q Consensus 364 ~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~ 437 (956)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++.........++++|++|++++|.++......+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 345566666666666555554443 4666666666666 34332222334456666666666666554332222 23
Q ss_pred CCCcceEEcCCCC--CCC-CCchhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecccccccccCCCCCCCCcCC
Q 046848 438 PFQLSQVNLGSCK--IGP-RFPKWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLSNNQIKGKLPNLSSRFHPY 514 (956)
Q Consensus 438 ~~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~l 514 (956)
+++|+.|++++|. +.. .++.....+++|++|++++|...+.++..+ ..+++|++|+++.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~-------------- 247 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTA-------------- 247 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCC--------------
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccC--------------
Confidence 4466666666665 111 112223445777777777762222233332 3445667666554321
Q ss_pred CCeeecccceeeecCCCCCCCCceeeCCCCcCccccchhhhccCCceeEE-ECCCCCCCCCCCccccCCCCCCEEEcCCC
Q 046848 515 RPGIDISSNQFEGPIPQLPLNASFLNLSKNKFSGSISFLCSITGHKLDYI-DLSNNLLSGRLPDCWSQFDSLAILNLANN 593 (956)
Q Consensus 515 ~~~l~ls~n~l~g~~p~~~~~l~~L~l~~n~l~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 593 (956)
++..+. +.+..+.+... ++|+.| .+.+... +.++..+..+++|++|++++|
T Consensus 248 ----~~~~~~---------------------~~~l~~~l~~~--~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 248 ----EVRPDV---------------------YSGLSVALSGC--KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp ----CCCHHH---------------------HHHHHHHHHTC--TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTC
T ss_pred ----ccchhh---------------------HHHHHHHHhcC--CCcccccCCcccch-hhHHHHHHhhCCCCEEEccCC
Confidence 011111 11111111111 344444 2222211 123333344556666666666
Q ss_pred cccccC-CCCcCCCCCcCEEEccCceeee-eCCccccCCCCCcEEec---------CCccccccCChhHhhcCccCcEEE
Q 046848 594 SFFGKI-PDSIGFLKNLQSLSLYNNRLTG-ELPSFFTNGSQLTLMDL---------GKNGLSGEIPTWIGEGLVNLVVLS 662 (956)
Q Consensus 594 ~l~~~~-p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L---------s~N~l~~~ip~~~~~~l~~L~~L~ 662 (956)
.+++.. +..+..+++|++|++++| ++. .++.....+++|+.|++ +.+.+++.....+..++++|+.|+
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 544321 112345566666666665 321 12222234566666666 223444333333333466666666
Q ss_pred ccCCcccccCCcccc-CCCCcCEEecc--C----CcCCCCcCh-hccccccCcccccCcccccccccccccccccccccc
Q 046848 663 LKSNKFNGSIPLQLC-HLANVQILDLS--S----NNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKS 734 (956)
Q Consensus 663 L~~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (956)
++.|.+++..+..+. .+++|+.|+++ + |.+++.... .+..
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~-------------------------------- 426 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA-------------------------------- 426 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH--------------------------------
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH--------------------------------
Confidence 666666554444443 35666666666 2 333311100 0000
Q ss_pred cccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhc-cccCCEEEcccccccccCCccc-cCCCCCCEEECCC
Q 046848 735 YFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMD-LAGLIALNLSRNTLTGQITPKI-GQLKSLDFLDLSR 812 (956)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~Ls~ 812 (956)
....++.|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++
T Consensus 427 ---------------l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 427 ---------------IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp ---------------HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred ---------------HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 001222346666655 555444444444 5666666666666655444444 4466666666666
Q ss_pred CccCcCCcc-cccCCCCCCeEECcCCcc
Q 046848 813 NQFFGSIPS-SLSQLSRLSVMDLSYNNL 839 (956)
Q Consensus 813 N~l~~~ip~-~l~~l~~L~~L~ls~N~l 839 (956)
|++++..+. ....+++|++|++++|++
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 666443332 223356666666666665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=6.5e-24 Score=226.48 Aligned_cols=213 Identities=25% Similarity=0.207 Sum_probs=184.6
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
+++++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999877778999999999999999999888889999999999999999999998899999999999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCccccc-CCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGS-IPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLI 717 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 717 (956)
++|++.+..+..+. .+++|++|++++|++.+. +|..+..+++|++|++++|++++..+..+..++.++.+.
T Consensus 108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~------- 179 (276)
T 2z62_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN------- 179 (276)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC-------
T ss_pred CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc-------
Confidence 99999844343444 799999999999999874 689999999999999999999988877887776663210
Q ss_pred ccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc
Q 046848 718 SNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP 797 (956)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 797 (956)
..|++++|++++..+..+. ..+|+.|+|++|++++..+.
T Consensus 180 ----------------------------------------l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 180 ----------------------------------------LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp ----------------------------------------EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTT
T ss_pred ----------------------------------------eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHh
Confidence 2799999999966555544 45899999999999977777
Q ss_pred cccCCCCCCEEECCCCccCcCCc
Q 046848 798 KIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 798 ~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
.++.+++|+.|+|++|++++..|
T Consensus 219 ~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhcccccccEEEccCCcccccCC
Confidence 78999999999999999997553
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.1e-23 Score=225.65 Aligned_cols=206 Identities=24% Similarity=0.254 Sum_probs=174.4
Q ss_pred ccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccC
Q 046848 579 WSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNL 658 (956)
Q Consensus 579 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 658 (956)
+.++++++++++++|.++ .+|..+. ++++.|++++|++++..|..|..+++|+.|+|++|.++ .+|.. . .+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~-~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-C-CCCcC
Confidence 567778888888888887 4555543 67888888888888888888888888888888888888 45543 3 68889
Q ss_pred cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738 (956)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (956)
++|++++|++. .+|..+..+++|+.|++++|++++..|..|..+++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 99999999987 677788889999999999999998777777776666
Q ss_pred eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 818 (956)
++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .
T Consensus 127 -------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 127 -------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp -------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred -------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 88999999999887888889999999999999999766667789999999999999999 6
Q ss_pred CcccccCCCCCCeEECcCCcceecC
Q 046848 819 IPSSLSQLSRLSVMDLSYNNLSGKI 843 (956)
Q Consensus 819 ip~~l~~l~~L~~L~ls~N~l~g~i 843 (956)
+|..+..+..|+.+++++|++.|.+
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cChhhcccccCCeEEeCCCCccCcC
Confidence 7888888899999999999999875
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.8e-23 Score=218.12 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=180.6
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
...+.+++++++++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|+++...+..|.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35778999999998 4666554 67999999999999877788999999999999999999777777899999999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|+++ .+|...+..+++|++|++++|++++..+..+..+++|++|+|++|.+++..+..|..+++|
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------ 159 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL------------ 159 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc------------
Confidence 999998 6776665579999999999999998888889999999999999999997776667766665
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..
T Consensus 160 ---------------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 160 ---------------------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp ---------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ---------------------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 89999999999888888999999999999999999777777
Q ss_pred ccCCCCCCEEECCCCccCcCC
Q 046848 799 IGQLKSLDFLDLSRNQFFGSI 819 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~i 819 (956)
+..+++|+.|+|++|++...-
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSS
T ss_pred hccccCCCEEEecCCCeeCCC
Confidence 999999999999999997654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.8e-24 Score=226.02 Aligned_cols=222 Identities=23% Similarity=0.279 Sum_probs=178.1
Q ss_pred ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639 (956)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (956)
.+..+++..+.+.+.. ....+++|+.|++++|.+.. + ..+..+++|++|++++|++++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 4455566666665432 34567788888888888763 3 3577888888888888888853 368888888889998
Q ss_pred CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccc
Q 046848 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719 (956)
Q Consensus 640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 719 (956)
+|.++ .+|...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------- 159 (272)
T 3rfs_A 94 GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------- 159 (272)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence 88888 4554444478889999999999887777778889999999999999987777666666655
Q ss_pred ccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc
Q 046848 720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799 (956)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 799 (956)
+.|++++|++++..+..+..+++|+.|+|++|++++..|..+
T Consensus 160 --------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 160 --------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 889999999998888788899999999999999998888888
Q ss_pred cCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCC
Q 046848 800 GQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 800 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 846 (956)
+.+++|+.|++++|++++..| .|+.++++.|.++|.+|..
T Consensus 202 ~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred hCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 999999999999999886544 6888999999999999874
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.7e-23 Score=220.88 Aligned_cols=207 Identities=23% Similarity=0.249 Sum_probs=182.2
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 789999999999874 3 3588899999999999999863 47889999999999999999888888999999999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|+++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|
T Consensus 117 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 183 (272)
T 3rfs_A 117 VENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL------------ 183 (272)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC------------
Confidence 999999 5555544479999999999999998777778999999999999999998877777776666
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|+|++|++++..|..+..+++|+.|+|++|.+.+.
T Consensus 184 ---------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---- 220 (272)
T 3rfs_A 184 ---------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---- 220 (272)
T ss_dssp ---------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----
T ss_pred ---------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----
Confidence 8999999999998888899999999999999998854
Q ss_pred ccCCCCCCEEECCCCccCcCCcccccCCCC
Q 046848 799 IGQLKSLDFLDLSRNQFFGSIPSSLSQLSR 828 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 828 (956)
+++|+.|+++.|+++|.+|..++.+..
T Consensus 221 ---~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 221 ---CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 457999999999999999998876653
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.7e-22 Score=214.69 Aligned_cols=201 Identities=22% Similarity=0.200 Sum_probs=178.4
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++++++++++|.++ .+|..+. ++++.|++++|.+++..|..|..+++|++|++++|.+++..+. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence 67899999999998 5665553 6899999999999988888999999999999999999965443 78999999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|+++ .+|..+. ++++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 85 s~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------ 150 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------ 150 (290)
T ss_dssp CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC------------
Confidence 999998 8898776 79999999999999998777889999999999999999998777777766666
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..
T Consensus 151 ---------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~ 190 (290)
T 1p9a_G 151 ---------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190 (290)
T ss_dssp ---------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred ---------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence 89999999999777777889999999999999999 78999
Q ss_pred ccCCCCCCEEECCCCccCcC
Q 046848 799 IGQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ 818 (956)
+..+++|+.|+|++|++...
T Consensus 191 ~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 191 FFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTTCCCSEEECCSCCBCCS
T ss_pred hcccccCCeEEeCCCCccCc
Confidence 99999999999999999753
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=9.1e-23 Score=214.03 Aligned_cols=191 Identities=23% Similarity=0.253 Sum_probs=125.8
Q ss_pred CCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCccccc
Q 046848 632 QLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKG 711 (956)
Q Consensus 632 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~ 711 (956)
+++.|+|++|++++..|..+. ++++|++|++++|++++..|..+..+++|++|+|++|++++..+..|..+++|
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----- 109 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL----- 109 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----
T ss_pred CCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-----
Confidence 444444444444432222222 45555555555555555555556666777777777777766555555555444
Q ss_pred CcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccc
Q 046848 712 SNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTL 791 (956)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 791 (956)
++|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 110 ----------------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 110 ----------------------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp ----------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence 6777777777766666678888999999999999
Q ss_pred cccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCcc------ccccccCCCCCCC
Q 046848 792 TGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSF------STSMYAGNELCGL 865 (956)
Q Consensus 792 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~------~~~~~~~n~l~~~ 865 (956)
++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|+++|..+....+..+ ......|+.+++.
T Consensus 144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 223 (251)
T 3m19_A 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHES 223 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CC
T ss_pred CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccC
Confidence 8776778899999999999999999888888999999999999999999874432111111 1122345677888
Q ss_pred CCCCCCCCC
Q 046848 866 PLPNKCPDE 874 (956)
Q Consensus 866 ~~~~~c~~~ 874 (956)
|....|..+
T Consensus 224 ~~~~~C~~~ 232 (251)
T 3m19_A 224 PDGVTCSDG 232 (251)
T ss_dssp GGGCBBTTS
T ss_pred CCcCccCCC
Confidence 877788655
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.2e-24 Score=236.61 Aligned_cols=256 Identities=23% Similarity=0.260 Sum_probs=192.6
Q ss_pred eeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCC----ccccCCC-CCCEEEcCCCcccccCCCCcCCC-----CC
Q 046848 539 LNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLP----DCWSQFD-SLAILNLANNSFFGKIPDSIGFL-----KN 608 (956)
Q Consensus 539 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 608 (956)
.+++.|.++|.++...... ++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5677777777776654441 459999999999987766 7788888 89999999999988777766664 89
Q ss_pred cCEEEccCceeeeeCCccc----cCC-CCCcEEecCCccccccCChhHhhc----CccCcEEEccCCcccccC----Ccc
Q 046848 609 LQSLSLYNNRLTGELPSFF----TNG-SQLTLMDLGKNGLSGEIPTWIGEG----LVNLVVLSLKSNKFNGSI----PLQ 675 (956)
Q Consensus 609 L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~ip~~~~~~----l~~L~~L~L~~N~l~~~~----p~~ 675 (956)
|++|++++|++++..+..+ ..+ ++|++|+|++|++++..+..+... .++|++|++++|++++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999987766644 444 899999999999986555544422 358999999999998543 344
Q ss_pred ccCCC-CcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccc
Q 046848 676 LCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL 754 (956)
Q Consensus 676 l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 754 (956)
+..++ +|++|+|++|++++..+..+... + ...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--l---------------------------------------------~~~ 194 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKF--L---------------------------------------------ASI 194 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHH--H---------------------------------------------HTS
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHH--H---------------------------------------------HhC
Confidence 45565 89999999999987776555432 0 011
Q ss_pred -cceeEEEcCCCCCCCC----Cchhhhcc-ccCCEEEcccccccccCC----ccccCCCCCCEEECCCCccCcCCc----
Q 046848 755 -GLVKILDLSSNKLGGE----VPEEIMDL-AGLIALNLSRNTLTGQIT----PKIGQLKSLDFLDLSRNQFFGSIP---- 820 (956)
Q Consensus 755 -~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~~ip---- 820 (956)
+.|+.|||++|.+++. ++..+..+ ++|++|||++|++++..+ ..+..+++|+.|+|++|.+.+..+
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 1348999999999864 45566654 589999999999987544 335677899999999999665443
Q ss_pred ---ccccCCCCCCeEECcCCcceec
Q 046848 821 ---SSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 821 ---~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
..+..+++|+.||+++|++.+.
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHhccCCceEEEecCCCcCCCc
Confidence 3567788899999999998766
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.6e-24 Score=241.64 Aligned_cols=235 Identities=18% Similarity=0.248 Sum_probs=189.3
Q ss_pred CceeEEECCCCCCCCCCC----ccccCCCCCCEEEcCCC---cccccCCCCc-------CCCCCcCEEEccCceeee---
Q 046848 559 HKLDYIDLSNNLLSGRLP----DCWSQFDSLAILNLANN---SFFGKIPDSI-------GFLKNLQSLSLYNNRLTG--- 621 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~--- 621 (956)
++|++|++++|.+++..+ ..+..+++|++|++++| ++.+.+|..+ ..+++|++|+|++|++++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 679999999999887533 44778899999999986 4555666554 688999999999999987
Q ss_pred -eCCccccCCCCCcEEecCCccccccCChhHhh---cC---------ccCcEEEccCCccc-ccCC---ccccCCCCcCE
Q 046848 622 -ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGE---GL---------VNLVVLSLKSNKFN-GSIP---LQLCHLANVQI 684 (956)
Q Consensus 622 -~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l~~L~~ 684 (956)
.+|..+..+++|++|+|++|.+++..+..+.. .+ ++|++|++++|+++ +.+| ..+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 57788899999999999999997544444432 23 89999999999997 4444 46778889999
Q ss_pred EeccCCcCCC-----CcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeE
Q 046848 685 LDLSSNNISG-----IIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKI 759 (956)
Q Consensus 685 L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 759 (956)
|++++|+++. ..|..+..++ .|+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~---------------------------------------------------~L~~ 220 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQ---------------------------------------------------ELKV 220 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCT---------------------------------------------------TCCE
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCC---------------------------------------------------CccE
Confidence 9999999872 2222444433 4489
Q ss_pred EEcCCCCCC----CCCchhhhccccCCEEEccccccccc----CCcccc--CCCCCCEEECCCCccCc----CCcccc-c
Q 046848 760 LDLSSNKLG----GEVPEEIMDLAGLIALNLSRNTLTGQ----ITPKIG--QLKSLDFLDLSRNQFFG----SIPSSL-S 824 (956)
Q Consensus 760 L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~ 824 (956)
|+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..+. .+++|+.|+|++|++++ .+|..+ .
T Consensus 221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 999999996 67888999999999999999999876 567774 49999999999999998 588887 6
Q ss_pred CCCCCCeEECcCCcceecCC
Q 046848 825 QLSRLSVMDLSYNNLSGKIP 844 (956)
Q Consensus 825 ~l~~L~~L~ls~N~l~g~ip 844 (956)
++++|++|++++|++++..|
T Consensus 301 ~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HCTTCCEEECTTSBSCTTSH
T ss_pred cCCCceEEEccCCcCCcchh
Confidence 68999999999999998764
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.1e-23 Score=224.12 Aligned_cols=202 Identities=22% Similarity=0.163 Sum_probs=128.7
Q ss_pred CCCCEEEcCCCcccccCCCCc--CCCCCcCEEEccCceeeeeCC----ccccCCCCCcEEecCCccccccCChhHhhcCc
Q 046848 583 DSLAILNLANNSFFGKIPDSI--GFLKNLQSLSLYNNRLTGELP----SFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLV 656 (956)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 656 (956)
++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+ ..+..+++|++|+|++|++.+..|..+. .++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCC
Confidence 446666666666665555555 556666666666666654333 2334556666666666666533333333 566
Q ss_pred cCcEEEccCCccccc--C--CccccCCCCcCEEeccCCcCCCCcCh---hccccccCcccccCccccccccccccccccc
Q 046848 657 NLVVLSLKSNKFNGS--I--PLQLCHLANVQILDLSSNNISGIIPK---CFNNFTAMTHEKGSNLTLISNYYTSLAYDSL 729 (956)
Q Consensus 657 ~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 729 (956)
+|++|++++|++.+. + +..+..+++|++|+|++|+++...+. .+..++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~------------------------- 224 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV------------------------- 224 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-------------------------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-------------------------
Confidence 666666666665432 1 12235677788888888877532111 122333
Q ss_pred ccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcc---ccCCEEEcccccccccCCccccCCCCCC
Q 046848 730 KTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDL---AGLIALNLSRNTLTGQITPKIGQLKSLD 806 (956)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 806 (956)
.|++|||++|++++.+|..+..+ ++|+.|+|++|+++ .+|..+. ++|+
T Consensus 225 --------------------------~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~ 275 (310)
T 4glp_A 225 --------------------------QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR 275 (310)
T ss_dssp --------------------------CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred --------------------------CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence 33778888888887777777666 58888888888888 6777764 7888
Q ss_pred EEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848 807 FLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 807 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 841 (956)
.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus 276 ~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 276 VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 888888888864 33 5677888888888888864
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.4e-22 Score=207.28 Aligned_cols=196 Identities=19% Similarity=0.184 Sum_probs=130.3
Q ss_pred CCCEEEcCCCcccccCCCCcCCCCCcCEEEccCce-eeeeCCccccCCCCCcEEecCC-ccccccCChhHhhcCccCcEE
Q 046848 584 SLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR-LTGELPSFFTNGSQLTLMDLGK-NGLSGEIPTWIGEGLVNLVVL 661 (956)
Q Consensus 584 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~ip~~~~~~l~~L~~L 661 (956)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 66777777777776666666677777777777775 6655556677777777777776 6666 4554444456777777
Q ss_pred EccCCcccccCCccccCCCCcC---EEeccCC-cCCCCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848 662 SLKSNKFNGSIPLQLCHLANVQ---ILDLSSN-NISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD 737 (956)
Q Consensus 662 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (956)
++++|++++ +|. +..+++|+ .|++++| .+++..+..|..++.|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 777777764 554 66666666 7777777 7765555556555544
Q ss_pred ceeEEecCccceeccccccee-EEEcCCCCCCCCCchhhhccccCCEEEccccc-ccccCCccccCC-CCCCEEECCCCc
Q 046848 738 KAVLTWKGSQYEYQSTLGLVK-ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT-LTGQITPKIGQL-KSLDFLDLSRNQ 814 (956)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~ 814 (956)
+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|..+ ++|+.||+++|+
T Consensus 158 --------------------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 158 --------------------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp --------------------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred --------------------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 6 7777777777 444433333677778888884 776556677777 788888888888
Q ss_pred cCcCCcccccCCCCCCeEECcCC
Q 046848 815 FFGSIPSSLSQLSRLSVMDLSYN 837 (956)
Q Consensus 815 l~~~ip~~l~~l~~L~~L~ls~N 837 (956)
+++..+. .+++|+.|+++++
T Consensus 217 l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 217 VTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCT---TCTTCSEEECTTC
T ss_pred cccCChh---HhccCceeeccCc
Confidence 8744333 4566777777765
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=220.04 Aligned_cols=226 Identities=20% Similarity=0.173 Sum_probs=181.5
Q ss_pred CceeeCCCCcCcccc-c---hhhhccCCceeEEECCCCCCCCCCCccc--cCCCCCCEEEcCCCcccccCC----CCcCC
Q 046848 536 ASFLNLSKNKFSGSI-S---FLCSITGHKLDYIDLSNNLLSGRLPDCW--SQFDSLAILNLANNSFFGKIP----DSIGF 605 (956)
Q Consensus 536 l~~L~l~~n~l~~~~-~---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 605 (956)
++.+.+.++.+.... . ..... ++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred eeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456666666654321 1 11122 679999999999999999888 899999999999999997655 34567
Q ss_pred CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCcccccc--CCh-hHhhcCccCcEEEccCCcccccCCc----cccC
Q 046848 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGE--IPT-WIGEGLVNLVVLSLKSNKFNGSIPL----QLCH 678 (956)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--ip~-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~ 678 (956)
+++|++|++++|++++..|..|+.+++|++|+|++|++.+. ++. .....+++|++|++++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999999998899999999999999999998753 322 222368999999999999973 332 2578
Q ss_pred CCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccccccee
Q 046848 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK 758 (956)
Q Consensus 679 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 758 (956)
+++|++|+|++|++++..|..+..+..+ +.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~------------------------------------------------~~L~ 254 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWS------------------------------------------------SALN 254 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCC------------------------------------------------TTCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCc------------------------------------------------CcCC
Confidence 8999999999999999888777665322 2348
Q ss_pred EEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848 759 ILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 759 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
+|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|+.|+|++|+++.
T Consensus 255 ~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 255 SLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999999999 6787775 8999999999999963 44 7889999999999999974
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.4e-23 Score=225.31 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=176.4
Q ss_pred CceeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccccc-CCCCcCCCCCcCEEEc
Q 046848 536 ASFLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGK-IPDSIGFLKNLQSLSL 614 (956)
Q Consensus 536 l~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L 614 (956)
.+.++++++.+.... ......+.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCCHHH--HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCCHHH--HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 556667666665221 1111115788888888888876665 45678888888888887755 6777778888888888
Q ss_pred cCceeeeeCCccccCCCCCcEEecCCc-ccccc-CChhHhhcCccCcEEEccCC-ccccc-CCccccCCC-CcCEEeccC
Q 046848 615 YNNRLTGELPSFFTNGSQLTLMDLGKN-GLSGE-IPTWIGEGLVNLVVLSLKSN-KFNGS-IPLQLCHLA-NVQILDLSS 689 (956)
Q Consensus 615 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~ 689 (956)
++|++++..+..++.+++|++|++++| .+++. +|..+. ++++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 888888777778888888888888888 56653 555454 6888888888888 77754 566677788 888888888
Q ss_pred C--cCC-CCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCC
Q 046848 690 N--NIS-GIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK 766 (956)
Q Consensus 690 N--~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 766 (956)
| .++ +.+|..+..+++| +.|++++|.
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L---------------------------------------------------~~L~l~~~~ 233 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNL---------------------------------------------------VHLDLSDSV 233 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTC---------------------------------------------------SEEECTTCT
T ss_pred CcccCCHHHHHHHHhhCCCC---------------------------------------------------CEEeCCCCC
Confidence 8 444 3344444444443 788888888
Q ss_pred -CCCCCchhhhccccCCEEEccccc-ccccCCccccCCCCCCEEECCCCccCcCCcccccCC-CCCCeEECcCCcceecC
Q 046848 767 -LGGEVPEEIMDLAGLIALNLSRNT-LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQL-SRLSVMDLSYNNLSGKI 843 (956)
Q Consensus 767 -l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~i 843 (956)
+++..+..+..+++|+.|+|++|. ++......++++++|+.|++++| ++. +.+..+ ..+..|++++|++++..
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTT
T ss_pred cCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCcccc
Confidence 777777788888888888888884 33222235778888888888888 332 233333 23667778888888887
Q ss_pred CC
Q 046848 844 PS 845 (956)
Q Consensus 844 p~ 845 (956)
|.
T Consensus 310 ~~ 311 (336)
T 2ast_B 310 RP 311 (336)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.1e-21 Score=209.98 Aligned_cols=194 Identities=25% Similarity=0.417 Sum_probs=139.3
Q ss_pred cCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCc
Q 046848 580 SQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLV 659 (956)
Q Consensus 580 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 659 (956)
..+++|+.|++++|.+.. +| .+..+++|++|++++|++++..+ +..+++|++|++++|+++ .+| .+. .+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCC
Confidence 445667777777777663 34 46667777777777777774433 777777777777777776 444 343 577788
Q ss_pred EEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccce
Q 046848 660 VLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKA 739 (956)
Q Consensus 660 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (956)
+|++++|++++. + .+..+++|+.|++++|++++..+ +..+++|
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L--------------------------------- 153 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL--------------------------------- 153 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC---------------------------------
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc---------------------------------
Confidence 888888877753 3 37778888888888888875443 4444333
Q ss_pred eEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCC
Q 046848 740 VLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSI 819 (956)
Q Consensus 740 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 819 (956)
+.|+|++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..
T Consensus 154 ------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 154 ------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp ------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred ------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 778888888885433 7888888888888888875433 788888888888888888655
Q ss_pred cccccCCCCCCeEECcCCccee
Q 046848 820 PSSLSQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 820 p~~l~~l~~L~~L~ls~N~l~g 841 (956)
| +..+++|+.|++++|++++
T Consensus 212 ~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 P--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GTTCTTCCEEEEEEEEEEC
T ss_pred c--ccCCCCCCEEEccCCeeec
Confidence 3 7888888888888888876
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.1e-21 Score=207.72 Aligned_cols=192 Identities=21% Similarity=0.347 Sum_probs=162.9
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++. + .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 689999999999984 45 58889999999999999986544 89999999999999999853 3 6899999999999
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|+++ .+|. +. .+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|
T Consensus 115 ~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L------------ 175 (308)
T 1h6u_A 115 TSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL------------ 175 (308)
T ss_dssp TTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC------------
T ss_pred CCCCCC-Cchh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC------------
Confidence 999998 5665 44 79999999999999986543 8899999999999999986443 5554444
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPK 798 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 798 (956)
+.|++++|++++..+ +..+++|+.|+|++|++++.. .
T Consensus 176 ---------------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~ 212 (308)
T 1h6u_A 176 ---------------------------------------TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--P 212 (308)
T ss_dssp ---------------------------------------CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--G
T ss_pred ---------------------------------------CEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--c
Confidence 899999999996544 889999999999999999654 3
Q ss_pred ccCCCCCCEEECCCCccCcC
Q 046848 799 IGQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 799 l~~l~~L~~L~Ls~N~l~~~ 818 (956)
+..+++|+.|++++|++++.
T Consensus 213 l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GTTCTTCCEEEEEEEEEECC
T ss_pred ccCCCCCCEEEccCCeeecC
Confidence 89999999999999999863
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.8e-21 Score=202.70 Aligned_cols=198 Identities=18% Similarity=0.191 Sum_probs=171.2
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCc-ccccCCCCcCCCCCcCEEEccC-ceeeeeCCccccCCCCCcEE
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNS-FFGKIPDSIGFLKNLQSLSLYN-NRLTGELPSFFTNGSQLTLM 636 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L 636 (956)
+++++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999998777789999999999999997 8877777899999999999999 99998888899999999999
Q ss_pred ecCCccccccCChhHhhcCccCc---EEEccCC-cccccCCccccCCCCcC-EEeccCCcCCCCcChhccccccCccccc
Q 046848 637 DLGKNGLSGEIPTWIGEGLVNLV---VLSLKSN-KFNGSIPLQLCHLANVQ-ILDLSSNNISGIIPKCFNNFTAMTHEKG 711 (956)
Q Consensus 637 ~Ls~N~l~~~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~~ 711 (956)
++++|+++ .+|. +. .+++|+ +|++++| ++++..+..+.++++|+ .|++++|+++...+..|.. +
T Consensus 111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~------- 179 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T------- 179 (239)
T ss_dssp EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C-------
T ss_pred eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C-------
Confidence 99999999 5887 44 688888 9999999 99877777899999999 9999999998333333322 2
Q ss_pred CcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCC-CCCCCchhhhcc-ccCCEEEcccc
Q 046848 712 SNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNK-LGGEVPEEIMDL-AGLIALNLSRN 789 (956)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N 789 (956)
.|+.|+|++|+ +++..+..|..+ ++|+.|+|++|
T Consensus 180 --------------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 180 --------------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp --------------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred --------------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 34899999995 997778889999 99999999999
Q ss_pred cccccCCccccCCCCCCEEECCCCc
Q 046848 790 TLTGQITPKIGQLKSLDFLDLSRNQ 814 (956)
Q Consensus 790 ~l~~~ip~~l~~l~~L~~L~Ls~N~ 814 (956)
++++ +|.. .+++|+.|+++++.
T Consensus 216 ~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 216 SVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCC-CCCT--TCTTCSEEECTTC-
T ss_pred cccc-CChh--HhccCceeeccCcc
Confidence 9994 5654 78899999999874
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.6e-23 Score=229.64 Aligned_cols=189 Identities=21% Similarity=0.252 Sum_probs=141.2
Q ss_pred cCCCCCCEEEcCCCcccc----cCCCCcCCCCCcCEEEccCceeeeeCCcc----ccCC---------CCCcEEecCCcc
Q 046848 580 SQFDSLAILNLANNSFFG----KIPDSIGFLKNLQSLSLYNNRLTGELPSF----FTNG---------SQLTLMDLGKNG 642 (956)
Q Consensus 580 ~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l---------~~L~~L~Ls~N~ 642 (956)
..+++|++|+|++|.+.+ .+|..+..+++|++|+|++|.++...+.. +..+ ++|++|+|++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 566777777777777765 35566677777777777777776433333 3333 788888888888
Q ss_pred cc-ccCC---hhHhhcCccCcEEEccCCcccc-----cCCccccCCCCcCEEeccCCcCC----CCcChhccccccCccc
Q 046848 643 LS-GEIP---TWIGEGLVNLVVLSLKSNKFNG-----SIPLQLCHLANVQILDLSSNNIS----GIIPKCFNNFTAMTHE 709 (956)
Q Consensus 643 l~-~~ip---~~~~~~l~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~ 709 (956)
++ +.+| ..+. .+++|++|++++|++.. ..|..+..+++|+.|+|++|.++ +.+|..+..+++|
T Consensus 171 l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L--- 246 (386)
T 2ca6_A 171 LENGSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL--- 246 (386)
T ss_dssp CTGGGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC---
T ss_pred CCcHHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc---
Confidence 86 4455 2333 57888999999988872 34447888899999999999986 4555555555544
Q ss_pred ccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCC----Cchhhhc--cccCCE
Q 046848 710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGE----VPEEIMD--LAGLIA 783 (956)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~ 783 (956)
+.|+|++|.+++. +|..+.. +++|+.
T Consensus 247 ------------------------------------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 247 ------------------------------------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp ------------------------------------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred ------------------------------------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence 8899999999876 5666644 899999
Q ss_pred EEcccccccc----cCCccc-cCCCCCCEEECCCCccCcCCc
Q 046848 784 LNLSRNTLTG----QITPKI-GQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 784 L~Ls~N~l~~----~ip~~l-~~l~~L~~L~Ls~N~l~~~ip 820 (956)
|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999999997 488887 668999999999999998775
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=9.2e-21 Score=198.71 Aligned_cols=180 Identities=23% Similarity=0.242 Sum_probs=110.9
Q ss_pred ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639 (956)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (956)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|++++..|..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666665 3444333 355666666666655555555555555555555555555555445555555555555
Q ss_pred CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccc
Q 046848 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISN 719 (956)
Q Consensus 640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~ 719 (956)
+|++ ++..+..+..+++|++|+|++|++++..+..|..+++|
T Consensus 92 ~n~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------- 133 (251)
T 3m19_A 92 NNQL-------------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------- 133 (251)
T ss_dssp TSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred CCcc-------------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc-------------
Confidence 5554 44444445555666666666666665544444444444
Q ss_pred ccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc
Q 046848 720 YYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI 799 (956)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l 799 (956)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+
T Consensus 134 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 134 --------------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 666677777765556567777778888888888887666677
Q ss_pred cCCCCCCEEECCCCccCcC
Q 046848 800 GQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 800 ~~l~~L~~L~Ls~N~l~~~ 818 (956)
..+++|+.|+|++|++++.
T Consensus 176 ~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSCCBCTT
T ss_pred hCCCCCCEEEeeCCceeCC
Confidence 8888888888888888765
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=4.9e-22 Score=220.67 Aligned_cols=233 Identities=19% Similarity=0.203 Sum_probs=186.9
Q ss_pred EEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCC----CCcCCCC-CcCEEEccCceeeeeCCccccCC-----CC
Q 046848 563 YIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIP----DSIGFLK-NLQSLSLYNNRLTGELPSFFTNG-----SQ 632 (956)
Q Consensus 563 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 632 (956)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999888888889999999999997766 7788888 99999999999998877777765 99
Q ss_pred CcEEecCCccccccCChhHhh---cC-ccCcEEEccCCcccccCCccc----cC-CCCcCEEeccCCcCCCCcChhcccc
Q 046848 633 LTLMDLGKNGLSGEIPTWIGE---GL-VNLVVLSLKSNKFNGSIPLQL----CH-LANVQILDLSSNNISGIIPKCFNNF 703 (956)
Q Consensus 633 L~~L~Ls~N~l~~~ip~~~~~---~l-~~L~~L~L~~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~~p~~~~~l 703 (956)
|++|+|++|++++..+..+.. .+ ++|++|++++|++++..+..+ .. .++|++|+|++|.+++..+..+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999776665553 23 799999999999987666543 34 3699999999999986554443221
Q ss_pred ccCcccccCcccccccccccccccccccccccccceeEEecCccceecccc-cceeEEEcCCCCCCCCCchhhhcc----
Q 046848 704 TAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTL-GLVKILDLSSNKLGGEVPEEIMDL---- 778 (956)
Q Consensus 704 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l---- 778 (956)
+ ... ..|++|+|++|++++..+..+...
T Consensus 162 --l---------------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 194 (362)
T 3goz_A 162 --L---------------------------------------------AAIPANVNSLNLRGNNLASKNCAELAKFLASI 194 (362)
T ss_dssp --H---------------------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred --H---------------------------------------------hcCCccccEeeecCCCCchhhHHHHHHHHHhC
Confidence 0 011 145999999999998888766544
Q ss_pred -ccCCEEEccccccccc----CCccccC-CCCCCEEECCCCccCcCCc----ccccCCCCCCeEECcCCcceec
Q 046848 779 -AGLIALNLSRNTLTGQ----ITPKIGQ-LKSLDFLDLSRNQFFGSIP----SSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 779 -~~L~~L~Ls~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
++|++|||++|++++. ++..+.. .++|+.|||++|++++..+ ..+..+++|++|++++|.+.+.
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 6999999999999873 5556666 4599999999999998766 3346778999999999996543
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.1e-21 Score=213.64 Aligned_cols=221 Identities=20% Similarity=0.234 Sum_probs=190.0
Q ss_pred CceeEEECCCCCCCCCCCccccCC--CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeee-CCccccCCCCCcE
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQF--DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGE-LPSFFTNGSQLTL 635 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~ 635 (956)
..++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 45889999999887 5666776 8999999999999987776 55799999999999999876 8888999999999
Q ss_pred EecCCccccccCChhHhhcCccCcEEEccCC-ccccc-CCccccCCCCcCEEeccCC-cCCCC-cChhccccc-cCcccc
Q 046848 636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSN-KFNGS-IPLQLCHLANVQILDLSSN-NISGI-IPKCFNNFT-AMTHEK 710 (956)
Q Consensus 636 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~~~ 710 (956)
|+|++|.+++..|..+. .+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus 123 L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L---- 197 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI---- 197 (336)
T ss_dssp EECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC----
T ss_pred EeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC----
Confidence 99999999988888887 6999999999999 67763 6777888999999999999 88764 455555555 44
Q ss_pred cCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCC--CCC-CCCchhhhccccCCEEEcc
Q 046848 711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN--KLG-GEVPEEIMDLAGLIALNLS 787 (956)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls 787 (956)
++|++++| .++ +.+|..+..+++|+.|+|+
T Consensus 198 -----------------------------------------------~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 198 -----------------------------------------------TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp -----------------------------------------------CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred -----------------------------------------------CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 89999999 566 5678888999999999999
Q ss_pred ccc-ccccCCccccCCCCCCEEECCCCccCcCCcc---cccCCCCCCeEECcCC
Q 046848 788 RNT-LTGQITPKIGQLKSLDFLDLSRNQFFGSIPS---SLSQLSRLSVMDLSYN 837 (956)
Q Consensus 788 ~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~---~l~~l~~L~~L~ls~N 837 (956)
+|. +++..+..++.+++|+.|++++|. +..+. .+..+++|++|++++|
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 888889999999999999999996 33344 6788999999999998
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.2e-20 Score=215.06 Aligned_cols=189 Identities=24% Similarity=0.379 Sum_probs=136.1
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
.+++.|++++|.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|++++|+|++ +|. +.. +|+.|+|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 478888888888876 66544 367888888888887 566 346788888888888886 666 554 7888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
++|++++ +|. .+++|++|++++|++++ +|. .+++|+.|+|++|++++ +|. |. ++|
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L------------ 182 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL------------ 182 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC------------
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC------------
Confidence 8888874 776 36788888888888875 554 46778888888888776 444 33 333
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccC-------CEEEcccccc
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGL-------IALNLSRNTL 791 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l 791 (956)
+.|+|++|+|+ .+|. +.. +| +.|+|++|+|
T Consensus 183 ---------------------------------------~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 183 ---------------------------------------EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp ---------------------------------------CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred ---------------------------------------CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 77888888887 5555 443 56 7788888888
Q ss_pred cccCCccccCCCCCCEEECCCCccCcCCcccccCCC
Q 046848 792 TGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS 827 (956)
Q Consensus 792 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 827 (956)
+ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 7 5777777788888888888888877777776543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=5e-20 Score=187.14 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=79.1
Q ss_pred eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641 (956)
Q Consensus 562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (956)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 35566666665 334332 346666777776666555555666666666666666666555555566666666666666
Q ss_pred cccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccc
Q 046848 642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFT 704 (956)
Q Consensus 642 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 704 (956)
+++ .+|...+.++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 666 44443333455666666666666544444455555666666666655544443344333
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.3e-19 Score=199.93 Aligned_cols=226 Identities=21% Similarity=0.241 Sum_probs=174.2
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCC-CCcCCCCCcCE-EEccCceeeeeCCccccCCCCCcEE
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIP-DSIGFLKNLQS-LSLYNNRLTGELPSFFTNGSQLTLM 636 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L 636 (956)
+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++++. +.++.|+++...|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578999999999996666789999999999999999876665 56888988775 6677899998889999999999999
Q ss_pred ecCCccccccCChhHhhcCccCcEEEccC-CcccccCCccccCCC-CcCEEeccCCcCCCCcChhccccccCcccccCcc
Q 046848 637 DLGKNGLSGEIPTWIGEGLVNLVVLSLKS-NKFNGSIPLQLCHLA-NVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNL 714 (956)
Q Consensus 637 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 714 (956)
++++|++. .+|...+....++..|++.+ +++....+..+..+. .++.|+|++|+|+.+.+..|.. .
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~-~---------- 177 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG-T---------- 177 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-E----------
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-c----------
Confidence 99999998 55554443567888899966 567655555677664 6889999999998554444322 2
Q ss_pred cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCC-CCCCCCCchhhhccccCCEEEcccccccc
Q 046848 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSS-NKLGGEVPEEIMDLAGLIALNLSRNTLTG 793 (956)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 793 (956)
.++.+++++ |.++...+..|..+++|++|||++|+|+.
T Consensus 178 -----------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 178 -----------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp -----------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred -----------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 248899985 66664444678999999999999999994
Q ss_pred cCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848 794 QITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 794 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 841 (956)
+|.. .+.+|+.|.+.++.--..+| .+.++++|+.++++++.-.+
T Consensus 217 -lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c~ 260 (350)
T 4ay9_X 217 -LPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHCC 260 (350)
T ss_dssp -CCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHHH
T ss_pred -cChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcccc
Confidence 5542 35566777766665555777 48889999999998765444
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.8e-20 Score=211.84 Aligned_cols=183 Identities=24% Similarity=0.372 Sum_probs=156.7
Q ss_pred CCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEE
Q 046848 583 DSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLS 662 (956)
Q Consensus 583 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 662 (956)
.+|+.|++++|.+++ +|..+ +++|++|++++|+|+ .+| ..+++|+.|+|++|++++ +|. +. . +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEE
Confidence 389999999999997 77665 388999999999999 677 457999999999999995 888 54 2 999999
Q ss_pred ccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEE
Q 046848 663 LKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLT 742 (956)
Q Consensus 663 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (956)
+++|++++ +|. .+++|+.|+|++|++++ +|. .+++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~------------------------------------- 161 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTS------------------------------------- 161 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTT-------------------------------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCC-------------------------------------
Confidence 99999997 666 68999999999999986 444 2233
Q ss_pred ecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCC-------CEEECCCCcc
Q 046848 743 WKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSL-------DFLDLSRNQF 815 (956)
Q Consensus 743 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l 815 (956)
|+.|+|++|+|++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|
T Consensus 162 --------------L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 162 --------------LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp --------------CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred --------------cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 3899999999997 776 66 89999999999999 7777 665 77 9999999999
Q ss_pred CcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 816 FGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 816 ~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 9 5888888899999999999999998875
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=4.2e-20 Score=187.73 Aligned_cols=81 Identities=23% Similarity=0.227 Sum_probs=49.3
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 837 (956)
++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+. ++.|+.|+++.|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n 175 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence 5555555555544444555666666666666666655454566666666666666666543 235666666777
Q ss_pred cceecCCC
Q 046848 838 NLSGKIPS 845 (956)
Q Consensus 838 ~l~g~ip~ 845 (956)
.++|.+|.
T Consensus 176 ~~~g~ip~ 183 (208)
T 2o6s_A 176 KHSGVVRN 183 (208)
T ss_dssp HCTTTBBC
T ss_pred hCCceeec
Confidence 77776665
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=185.79 Aligned_cols=157 Identities=24% Similarity=0.266 Sum_probs=134.9
Q ss_pred cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCC-ccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIP-LQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712 (956)
Q Consensus 634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 712 (956)
+.+++++|.++ .+|..+. ..+++|++++|++++..| ..+..+++|+.|+|++|++++..+..|.+++.|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 46777777777 6776543 356788888888887654 457888899999999999987777777776666
Q ss_pred cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT 792 (956)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 792 (956)
++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus 84 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 84 ---------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp ---------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred ---------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 88999999999888888999999999999999999
Q ss_pred ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 793 GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
+..|..|..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.++.
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 98899999999999999999999999999999999999999999999998764
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3e-19 Score=182.59 Aligned_cols=156 Identities=24% Similarity=0.311 Sum_probs=136.1
Q ss_pred cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCc
Q 046848 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN 713 (956)
Q Consensus 634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 713 (956)
+.++++++.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|+|++|++++..|..|.+++.|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 56777777777 7777543 578889999998887777788889999999999999988888888777666
Q ss_pred ccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccc
Q 046848 714 LTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG 793 (956)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 793 (956)
++|+|++|+|++..+..|..+++|+.|+|++|++++
T Consensus 83 --------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 83 --------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp --------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred --------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 889999999997666778899999999999999999
Q ss_pred cCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCC
Q 046848 794 QITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIP 844 (956)
Q Consensus 794 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 844 (956)
..|..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.++
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 889999999999999999999999888889999999999999999999764
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3e-19 Score=197.09 Aligned_cols=234 Identities=18% Similarity=0.146 Sum_probs=165.3
Q ss_pred eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCC-ccccCCCCCcE-EecC
Q 046848 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELP-SFFTNGSQLTL-MDLG 639 (956)
Q Consensus 562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~Ls 639 (956)
++++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677778887 566655 3578888888888886666678888888888888888765554 46778877665 5666
Q ss_pred CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccC-CcCCCCcChhccccccCcccccCcccccc
Q 046848 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS-NNISGIIPKCFNNFTAMTHEKGSNLTLIS 718 (956)
Q Consensus 640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 718 (956)
+|+++ .+|...+.++++|++|++++|++.+..+..+....++..|++.+ |++....+..|..+..
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~------------- 154 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF------------- 154 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-------------
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-------------
Confidence 77787 56555555788888888888888766666666667777788765 4555443344433321
Q ss_pred cccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccc-ccccccCC-
Q 046848 719 NYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSR-NTLTGQIT- 796 (956)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip- 796 (956)
.++.|+|++|+|+ .+|.......+|+.|++++ |.++ .+|
T Consensus 155 -------------------------------------~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~ 195 (350)
T 4ay9_X 155 -------------------------------------ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPN 195 (350)
T ss_dssp -------------------------------------SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCT
T ss_pred -------------------------------------hhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCH
Confidence 2488999999999 4565555678899999985 6666 555
Q ss_pred ccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCcccc
Q 046848 797 PKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFST 854 (956)
Q Consensus 797 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~ 854 (956)
..|+.+++|++|||++|+|+...+..+. .|+.|.+.+++--..+|.-..+..+..
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~l~~l~~L~~ 250 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEKLVALME 250 (350)
T ss_dssp TTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred HHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCCchhCcChhh
Confidence 5689999999999999999966555554 566666665555557776544554443
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1e-18 Score=180.07 Aligned_cols=157 Identities=25% Similarity=0.266 Sum_probs=136.3
Q ss_pred CcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848 633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712 (956)
Q Consensus 633 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 712 (956)
-+.++.+++.+. .+|..+ .++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..|..++.|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 456777777776 777754 3688899999999988888888899999999999999976666666666655
Q ss_pred cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT 792 (956)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 792 (956)
+.|+|++|+|++..+..|..+++|+.|+|++|+|+
T Consensus 91 ---------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 91 ---------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 88999999999877788899999999999999999
Q ss_pred ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 793 GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
.+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 7899999999999999999999988888899999999999999999998863
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=3.8e-19 Score=197.01 Aligned_cols=179 Identities=24% Similarity=0.216 Sum_probs=103.9
Q ss_pred CEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCcccc-CCCCCcEEecCCccccccCChhHhhcCccCcEEEcc
Q 046848 586 AILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFT-NGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLK 664 (956)
Q Consensus 586 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 664 (956)
+.+++++++++ .+|..+. +.++.|+|++|+|++..+..|. ++++|+.|+|++|+++ .++...+.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 57777777777 4565442 4577777777777766666665 6666666666666666 3333222245555555555
Q ss_pred CCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEec
Q 046848 665 SNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWK 744 (956)
Q Consensus 665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (956)
+|++++..+..|..+++|+.|+|++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N------------------------------------------------------ 122 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNN------------------------------------------------------ 122 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCC------------------------------------------------------
Confidence 55555444444444555555555554
Q ss_pred CccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccc---cCCCCCCEEECCCCccCcCCcc
Q 046848 745 GSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKI---GQLKSLDFLDLSRNQFFGSIPS 821 (956)
Q Consensus 745 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~ip~ 821 (956)
+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|++++..+.
T Consensus 123 ---------------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 123 ---------------------HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp ---------------------CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred ---------------------cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 4444445555555566666666666653222223 4566677777777777655556
Q ss_pred cccCCCC--CCeEECcCCcceecC
Q 046848 822 SLSQLSR--LSVMDLSYNNLSGKI 843 (956)
Q Consensus 822 ~l~~l~~--L~~L~ls~N~l~g~i 843 (956)
.+..++. ++.|++++|++.|.+
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEECCH
T ss_pred HhhhccHhhcceEEecCCCccCCc
Confidence 6666655 366777777777664
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=176.38 Aligned_cols=137 Identities=23% Similarity=0.217 Sum_probs=98.3
Q ss_pred CcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848 633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712 (956)
Q Consensus 633 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 712 (956)
+++|+|++|++++..|...+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 107 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------ 107 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence 34444444444433233323356666666666666665556667777777777777777777666666665555
Q ss_pred cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT 792 (956)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 792 (956)
++|+|++|++++..|..|..+++|+.|+|++|+++
T Consensus 108 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 108 ---------------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp ---------------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred ---------------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 77888888888777888888888899999999998
Q ss_pred ccCCccccCCCCCCEEECCCCccCcCCc
Q 046848 793 GQITPKIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
+..|..|..+++|+.|+|++|++++..+
T Consensus 143 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 143 TVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8888888899999999999999887654
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.4e-18 Score=186.14 Aligned_cols=186 Identities=24% Similarity=0.329 Sum_probs=98.5
Q ss_pred EECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccc
Q 046848 564 IDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGL 643 (956)
Q Consensus 564 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 643 (956)
+.+..+.+++..+ +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444444443222 23455666666666666533 2 35556666666666666664333 55555555555555555
Q ss_pred cccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccc
Q 046848 644 SGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTS 723 (956)
Q Consensus 644 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~ 723 (956)
+ .+|. +. .+++|++|++++|++++. ..+..+++|
T Consensus 103 ~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L----------------------------------------- 136 (291)
T 1h6t_A 103 K-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL----------------------------------------- 136 (291)
T ss_dssp C-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC-----------------------------------------
T ss_pred C-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC-----------------------------------------
Confidence 5 2332 22 344444444444444421 123334444
Q ss_pred ccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCC
Q 046848 724 LAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK 803 (956)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 803 (956)
+.|++++|++++. ..+..+++|+.|+|++|++++..| +..++
T Consensus 137 ----------------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~ 178 (291)
T 1h6t_A 137 ----------------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT 178 (291)
T ss_dssp ----------------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred ----------------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCC
Confidence 4555555555533 345556666666666666654333 56666
Q ss_pred CCCEEECCCCccCcCCcccccCCCCCCeEECcCCccee
Q 046848 804 SLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSG 841 (956)
Q Consensus 804 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 841 (956)
+|+.|++++|++++ +| .+..+++|+.|++++|++++
T Consensus 179 ~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 66666666666664 23 35666666666666666654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.5e-18 Score=182.90 Aligned_cols=175 Identities=24% Similarity=0.344 Sum_probs=127.9
Q ss_pred cCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCc
Q 046848 628 TNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMT 707 (956)
Q Consensus 628 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 707 (956)
..+++|+.|++++|.+. .+|. +. .+++|++|++++|++++..+ +..+++|+.|++++|.+++. | .+..++.|
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L- 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKL- 114 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTC-
T ss_pred hhcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCC-
Confidence 34555666666666665 4443 33 46677777777777765433 67777778888888777642 2 24443333
Q ss_pred ccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcc
Q 046848 708 HEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLS 787 (956)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 787 (956)
+.|+|++|++++. ..+..+++|+.|+|+
T Consensus 115 --------------------------------------------------~~L~L~~n~i~~~--~~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 115 --------------------------------------------------KSLSLEHNGISDI--NGLVHLPQLESLYLG 142 (291)
T ss_dssp --------------------------------------------------CEEECTTSCCCCC--GGGGGCTTCCEEECC
T ss_pred --------------------------------------------------CEEECCCCcCCCC--hhhcCCCCCCEEEcc
Confidence 7888888888854 468899999999999
Q ss_pred cccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCCCCcCCccccccccCCCCCCCCC
Q 046848 788 RNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPSGTQLQSFSTSMYAGNELCGLPL 867 (956)
Q Consensus 788 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l~~~~~ 867 (956)
+|++++. +.++.+++|+.|++++|++++..| +..+++|+.|++++|++++ +|.-..+..+....+.+|.+...|.
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCCcc
Confidence 9999964 689999999999999999998665 8999999999999999987 4544455566666677776555443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.6e-18 Score=201.50 Aligned_cols=127 Identities=28% Similarity=0.337 Sum_probs=62.5
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
+.|+.|++++|.+.. ++ .+..+++|+.|+|++|++.+..| +..+++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 445555555555542 22 34555555555555555554333 4555555555555555553 22 3555555555555
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGII 696 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 696 (956)
++|+++ .+|. +. .+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..
T Consensus 117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 555554 2322 22 355555555555555432 34445555555555555554433
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=8.5e-18 Score=186.16 Aligned_cols=180 Identities=27% Similarity=0.260 Sum_probs=140.9
Q ss_pred eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcC-CCCCcCEEEccCceeeeeCCccccCCCCCcEEecCC
Q 046848 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIG-FLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGK 640 (956)
Q Consensus 562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (956)
+.+++++++++ .+|..+. +.++.|+|++|++++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 4665543 4588899999999888777787 889999999999999988888899999999999999
Q ss_pred ccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccc
Q 046848 641 NGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY 720 (956)
Q Consensus 641 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 720 (956)
|+++ .+|...+.++++|++|+|++|++.+..|..|..+++|+.|+|++|++++..+..|..+.
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~---------------- 160 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN---------------- 160 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-------------------
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc----------------
Confidence 9988 56665555789999999999999888888899999999999999999865444442211
Q ss_pred cccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhcccc--CCEEEcccccccc
Q 046848 721 YTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAG--LIALNLSRNTLTG 793 (956)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 793 (956)
.++.|+.|||++|+|++..+..+..++. ++.|+|++|.+..
T Consensus 161 --------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 161 --------------------------------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred --------------------------------cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 1223478888888888766677887776 3778888888763
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.5e-17 Score=169.94 Aligned_cols=141 Identities=25% Similarity=0.353 Sum_probs=122.3
Q ss_pred eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641 (956)
Q Consensus 562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (956)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56888888888 5666554 68999999999999888888999999999999999999888999999999999999999
Q ss_pred cccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccC
Q 046848 642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAM 706 (956)
Q Consensus 642 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 706 (956)
+++ .+|..++.++++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..|..+++|
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC
Confidence 998 7888776679999999999999998888889999999999999999998877777766655
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.6e-17 Score=194.78 Aligned_cols=190 Identities=26% Similarity=0.374 Sum_probs=130.7
Q ss_pred eeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCC
Q 046848 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGK 640 (956)
Q Consensus 561 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 640 (956)
+..+.++.+.+.+.++ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445555565554333 4566777777888777764 33 46777788888888887776544 77777888888888
Q ss_pred ccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccc
Q 046848 641 NGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNY 720 (956)
Q Consensus 641 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 720 (956)
|+++ .+| .+. .+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|
T Consensus 97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-------------- 155 (605)
T 1m9s_A 97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-------------- 155 (605)
T ss_dssp SCCC-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC--------------
T ss_pred CCCC-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC--------------
Confidence 8777 454 344 577788888888877752 3577777888888888877754 334444333
Q ss_pred cccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCcccc
Q 046848 721 YTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIG 800 (956)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 800 (956)
+.|+|++|++++..| +..+++|+.|+|++|+|++. +.+.
T Consensus 156 -------------------------------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~ 194 (605)
T 1m9s_A 156 -------------------------------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA 194 (605)
T ss_dssp -------------------------------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred -------------------------------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence 777778887776655 77777788888888877752 3577
Q ss_pred CCCCCCEEECCCCccCcC
Q 046848 801 QLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 801 ~l~~L~~L~Ls~N~l~~~ 818 (956)
.+++|+.|+|++|++++.
T Consensus 195 ~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEEccCCcCcCC
Confidence 777788888888777765
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=6.3e-18 Score=168.80 Aligned_cols=133 Identities=21% Similarity=0.293 Sum_probs=102.5
Q ss_pred cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcCh-hccccccCcccccCccccccccccccccccccccccccc
Q 046848 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPK-CFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD 737 (956)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (956)
+++++++|.++ .+|..+.. +|+.|++++|++++..+. .|..++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L------------------------------- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL------------------------------- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence 45666666664 45544432 677777777777665553 35555444
Q ss_pred ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848 738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|+.+++|++|+|++|++++
T Consensus 57 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 57 --------------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp --------------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred --------------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence 778888888887778888888888889999999888888888889999999999999998
Q ss_pred CCcccccCCCCCCeEECcCCcceecCCC
Q 046848 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 818 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
.+|..+..+++|++|++++|+++|.+|.
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 117 VMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp ECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred eCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 8888888899999999999999988764
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.1e-19 Score=212.18 Aligned_cols=191 Identities=23% Similarity=0.196 Sum_probs=123.0
Q ss_pred CCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCce-------------eeeeCCccccCCCCCcEEe-cCCcccccc
Q 046848 581 QFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNR-------------LTGELPSFFTNGSQLTLMD-LGKNGLSGE 646 (956)
Q Consensus 581 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~ 646 (956)
.+++|+.|+|++|++. .+|..++.+++|+.|++++|. +.+..|..++++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3455566666666654 455556666666666655543 2333444444444444444 3333221
Q ss_pred CChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccc
Q 046848 647 IPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAY 726 (956)
Q Consensus 647 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 726 (956)
+|+.+.+++|.+....+ ..|+.|+|++|.+++ +|. ++.+++|
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L-------------------- 465 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV-------------------- 465 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC--------------------
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC--------------------
Confidence 12222333444442211 247788888888875 454 6555554
Q ss_pred cccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCC
Q 046848 727 DSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLD 806 (956)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 806 (956)
+.|+|++|+|+ .+|..++.+++|+.|+|++|+|++ +| .++.+++|+
T Consensus 466 -------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 466 -------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp -------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred -------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 77888888888 678888888888888888888885 56 788888888
Q ss_pred EEECCCCccCcCC-cccccCCCCCCeEECcCCcceecCCCC
Q 046848 807 FLDLSRNQFFGSI-PSSLSQLSRLSVMDLSYNNLSGKIPSG 846 (956)
Q Consensus 807 ~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~ 846 (956)
.|+|++|++++.+ |..+..+++|+.|++++|++++.+|..
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 8888888888776 888888888888888888888776643
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.2e-17 Score=165.81 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=44.0
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEccccc-ccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNT-LTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 836 (956)
++|+|++|++++..|..+..+++|+.|+|++|+ ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 455555555555555555556666666666665 33 343 45666666666666666654 22 455666666666666
Q ss_pred Ccce
Q 046848 837 NNLS 840 (956)
Q Consensus 837 N~l~ 840 (956)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 6654
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=9e-17 Score=165.38 Aligned_cols=154 Identities=19% Similarity=0.147 Sum_probs=133.8
Q ss_pred eeeCCCCcCccccchhhhccCCceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCc
Q 046848 538 FLNLSKNKFSGSISFLCSITGHKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNN 617 (956)
Q Consensus 538 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 617 (956)
.++.+++.+......+. ++|++|++++|.+++..|..|..+++|+.|++++|++.+..+..|..+++|++|+|++|
T Consensus 23 ~v~c~~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555544333222 68999999999999988999999999999999999998777778899999999999999
Q ss_pred eeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcC
Q 046848 618 RLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIP 697 (956)
Q Consensus 618 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 697 (956)
++++..+..|..+++|++|+|++|+++ .+|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999888888999999999999999999 9999887 79999999999999997777789999999999999999986543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.1e-17 Score=176.09 Aligned_cols=170 Identities=21% Similarity=0.273 Sum_probs=113.4
Q ss_pred CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEE
Q 046848 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL 685 (956)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 685 (956)
+.++..+++++|.+++.. .+..+++|+.|++++|.++ .+| .+. .+++|++|++++|++++..+ +..+++|+.|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 444555556666555332 3555666666666666665 555 333 46667777777777664333 6677777777
Q ss_pred eccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCC
Q 046848 686 DLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765 (956)
Q Consensus 686 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 765 (956)
++++|++++..+ . .. + .|+.|+|++|
T Consensus 91 ~L~~N~l~~l~~-~-~~-~---------------------------------------------------~L~~L~L~~N 116 (263)
T 1xeu_A 91 SVNRNRLKNLNG-I-PS-A---------------------------------------------------CLSRLFLDNN 116 (263)
T ss_dssp ECCSSCCSCCTT-C-CC-S---------------------------------------------------SCCEEECCSS
T ss_pred ECCCCccCCcCc-c-cc-C---------------------------------------------------cccEEEccCC
Confidence 777777764221 1 10 2 2377788888
Q ss_pred CCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848 766 KLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 766 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
++++. + .+..+++|+.|+|++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 117 ~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 117 ELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 77753 3 577788888888888888753 3 678888888888888888866 6677888888888888888776
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=4.2e-18 Score=205.16 Aligned_cols=183 Identities=22% Similarity=0.268 Sum_probs=79.1
Q ss_pred CCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccC
Q 046848 599 IPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCH 678 (956)
Q Consensus 599 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 678 (956)
.|+.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. ++++|++|+|++|+|+ .+|..+..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3445555555555566555555 44444445555666666666555 5555554 4556666666666655 45555555
Q ss_pred CCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccccccee
Q 046848 679 LANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVK 758 (956)
Q Consensus 679 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 758 (956)
+++|++|+|++|.|+ .+|..|+.+++| +
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L---------------------------------------------------~ 319 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNL---------------------------------------------------Q 319 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTC---------------------------------------------------C
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCc---------------------------------------------------c
Confidence 566666666666554 444445444444 5
Q ss_pred EEEcCCCCCCCCCchhhhcccc-CCEEEcccccccccCCccccCCCCCCEEECCCC--------ccCcCCcccccCCCCC
Q 046848 759 ILDLSSNKLGGEVPEEIMDLAG-LIALNLSRNTLTGQITPKIGQLKSLDFLDLSRN--------QFFGSIPSSLSQLSRL 829 (956)
Q Consensus 759 ~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L 829 (956)
.|+|++|.|++.+|..+..+.. +..++|++|.+++.+|.. |+.|++++| .+.+.++..+.++..+
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~ 393 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKR 393 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhccccc
Confidence 5566666666555555544322 123556666666655543 334445544 4444444455556666
Q ss_pred CeEECcCCcceecC
Q 046848 830 SVMDLSYNNLSGKI 843 (956)
Q Consensus 830 ~~L~ls~N~l~g~i 843 (956)
....+++|-+.+..
T Consensus 394 ~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 394 TFTVLSYNTLCQHY 407 (727)
T ss_dssp --------CCCGGG
T ss_pred ceeeeecccccccc
Confidence 66677777765443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=8e-19 Score=204.73 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=138.0
Q ss_pred CCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcC
Q 046848 604 GFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQ 683 (956)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 683 (956)
..++.|+.|+|++|+++ .+|..++++++|+.|++++|.....+|..+ ..+.+.+.+|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------------~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM------------RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH------------HhcccccCCHHHHHHHHhcc
Confidence 44666777777777776 566667777777777776554211111110 01123445566666667777
Q ss_pred EEe-ccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEc
Q 046848 684 ILD-LSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDL 762 (956)
Q Consensus 684 ~L~-Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 762 (956)
.|+ ++.|.+.. ++.+. +..+.+... ....|+.|+|
T Consensus 413 ~L~~l~~n~~~~--------L~~l~--------l~~n~i~~l----------------------------~~~~L~~L~L 448 (567)
T 1dce_A 413 AVDPMRAAYLDD--------LRSKF--------LLENSVLKM----------------------------EYADVRVLHL 448 (567)
T ss_dssp HHCGGGHHHHHH--------HHHHH--------HHHHHHHHH----------------------------HHTTCSEEEC
T ss_pred cCcchhhcccch--------hhhhh--------hhccccccc----------------------------CccCceEEEe
Confidence 776 55554431 11110 000000000 0012488999
Q ss_pred CCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceec
Q 046848 763 SSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGK 842 (956)
Q Consensus 763 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 842 (956)
++|+|++ +|. ++.+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .++.+++|++|++++|++++.
T Consensus 449 s~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 449 AHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp TTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred cCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 9999996 676 999999999999999999 899999999999999999999997 67 899999999999999999998
Q ss_pred C-CCC-CcCCccccccccCCCCCCCC
Q 046848 843 I-PSG-TQLQSFSTSMYAGNELCGLP 866 (956)
Q Consensus 843 i-p~~-~~~~~~~~~~~~~n~l~~~~ 866 (956)
+ |.. ..+..+....+.+|.+++.|
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 6 654 45666777778888887765
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.8e-17 Score=164.06 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=91.2
Q ss_pred CCCcCEEEccCceeeeeCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEE
Q 046848 606 LKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQIL 685 (956)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 685 (956)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..|..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 344444444444444 233 3444455555555555443 222 333 46666666666666666566666677777777
Q ss_pred eccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCC
Q 046848 686 DLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSN 765 (956)
Q Consensus 686 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 765 (956)
++++|++++..|..+..+++| +.|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L---------------------------------------------------~~L~L~~n 146 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKV---------------------------------------------------NSIDLSYN 146 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSC---------------------------------------------------CEEECCSC
T ss_pred EecCCccCcHhHHHHhhCCCC---------------------------------------------------CEEEccCC
Confidence 777777766566655555444 66777777
Q ss_pred C-CCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848 766 K-LGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 766 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 147 ~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 147 GAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 6 44 444 57777888888888888775 33 67778888888888887753
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.2e-17 Score=163.67 Aligned_cols=156 Identities=26% Similarity=0.302 Sum_probs=120.6
Q ss_pred cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCc-cccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPL-QLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712 (956)
Q Consensus 634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 712 (956)
+.+++++|.++ .+|..++ .+|++|++++|++.+..+. .+..+++|++|+|++|++++..|..|.+++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 57778888776 7777554 2788888888888766554 47888899999999999988888888776666
Q ss_pred cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT 792 (956)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 792 (956)
++|+|++|+|++..|..|..+++|+.|+|++|+++
T Consensus 81 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 81 ---------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp ---------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred ---------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 78999999999888888899999999999999999
Q ss_pred ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecCCC
Q 046848 793 GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
+.+|..++.+++|++|+|++|++++..+-..- ...++...+..+...|..|.
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 116 CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp EECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST
T ss_pred eeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCCh
Confidence 99999999999999999999999987653210 01122334455556666554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5.9e-18 Score=203.90 Aligned_cols=194 Identities=25% Similarity=0.271 Sum_probs=126.8
Q ss_pred eEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848 562 DYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641 (956)
Q Consensus 562 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (956)
..++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|
T Consensus 204 ~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 204 DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 34445555555 56788999999999999999998 67777789999999999999999 88999999999999999999
Q ss_pred cccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccc
Q 046848 642 GLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYY 721 (956)
Q Consensus 642 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~ 721 (956)
+|+ .+|..+. ++++|++|+|++|.++ .+|..|..+++|+.|+|++|.|++.+|..+..+...
T Consensus 281 ~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~--------------- 342 (727)
T 4b8c_D 281 RLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT--------------- 342 (727)
T ss_dssp CCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH---------------
T ss_pred cCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh---------------
Confidence 999 9999987 7999999999999997 788889999999999999999999999887654322
Q ss_pred ccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccc--------cccc
Q 046848 722 TSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRN--------TLTG 793 (956)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~ 793 (956)
...++|++|.+++.+|.. |+.|++++| .+.+
T Consensus 343 -----------------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~ 381 (727)
T 4b8c_D 343 -----------------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQ 381 (727)
T ss_dssp -----------------------------------HHHHHHHHCCCCCCCCCC---------------------------
T ss_pred -----------------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccc
Confidence 023678889998888864 456667766 4555
Q ss_pred cCCccccCCCCCCEEECCCCccCc
Q 046848 794 QITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 794 ~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
.++..+..+..++...+++|-+.+
T Consensus 382 ~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 382 STEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp --------------------CCCG
T ss_pred cccchhhcccccceeeeecccccc
Confidence 555566677777888888888763
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.4e-17 Score=175.27 Aligned_cols=123 Identities=20% Similarity=0.329 Sum_probs=72.2
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
.++..+++++|.+++.. .+..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34566667777776432 45667777777777777763 34 56667777777777777764433 666666666666
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS 693 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (956)
++|+++ .+|... . ++|++|++++|++++. + .+..+++|+.|++++|+++
T Consensus 93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCccc--c-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence 666666 344321 1 4555555555555432 2 3445555555555555554
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=151.75 Aligned_cols=131 Identities=24% Similarity=0.344 Sum_probs=105.3
Q ss_pred cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738 (956)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (956)
+++++++|.++ .+|..+. ++|+.|++++|+++ .+|..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 45666666665 4454432 46777888888776 555666555554
Q ss_pred eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 818 (956)
+.|+|++|+|++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++++.
T Consensus 57 -------------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 57 -------------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117 (193)
T ss_dssp -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred -------------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee
Confidence 7788888888877778888999999999999999988888899999999999999999987
Q ss_pred CcccccCCCCCCeEECcCCcceecCC
Q 046848 819 IPSSLSQLSRLSVMDLSYNNLSGKIP 844 (956)
Q Consensus 819 ip~~l~~l~~L~~L~ls~N~l~g~ip 844 (956)
.+..|..+++|+.|++++|++.|.+.
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 118 PEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ChhhhhcCccccEEEeCCCCeecCCc
Confidence 77789999999999999999999865
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.9e-15 Score=147.50 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=100.2
Q ss_pred CcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848 658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD 737 (956)
Q Consensus 658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (956)
.+.+++++|+++ .+|..+ .++|+.|++++|++++..+..|..++.|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L------------------------------- 54 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL------------------------------- 54 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence 345555555555 334332 2567777777777766555555555444
Q ss_pred ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848 738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
++|+|++|++++..+..+..+++|++|+|++|++++..+..++.+++|++|++++|++++
T Consensus 55 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 55 --------------------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred --------------------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE
Confidence 677777777776666667888889999999999987777778899999999999999997
Q ss_pred CCcccccCCCCCCeEECcCCcceecCCC
Q 046848 818 SIPSSLSQLSRLSVMDLSYNNLSGKIPS 845 (956)
Q Consensus 818 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 845 (956)
..+..+..+++|++|++++|++.|.+|.
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 115 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred eCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 7777778899999999999999998773
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.1e-15 Score=166.92 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=135.8
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCcee----eeeCCccccCCCCCc
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRL----TGELPSFFTNGSQLT 634 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~l~~L~ 634 (956)
++|+.+++.+ .++...+.+|.+|++|+.+++++|.+....+.+|.++.++..+....+.. ....+.+|.++..|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 5566666665 55544455566666666666666666555555566555555555444221 112233444555555
Q ss_pred -EEecCCccccccCChhHhhc---CccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccc
Q 046848 635 -LMDLGKNGLSGEIPTWIGEG---LVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEK 710 (956)
Q Consensus 635 -~L~Ls~N~l~~~ip~~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~ 710 (956)
.+++... +.++..++.. ..+++.+.+.++-...........+++|+.++|++|+++.+.+.+|.++++|
T Consensus 180 ~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---- 252 (329)
T 3sb4_A 180 TTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---- 252 (329)
T ss_dssp EEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC----
T ss_pred eeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC----
Confidence 3444322 2334433322 3455555555442221111111236788888888888886666677777666
Q ss_pred cCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCC-EEEcccc
Q 046848 711 GSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLI-ALNLSRN 789 (956)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N 789 (956)
+.|+|++| ++...+.+|.++++|+ .+++.+
T Consensus 253 -----------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 253 -----------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp -----------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred -----------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 77888887 7666667788888888 888888
Q ss_pred cccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEEC
Q 046848 790 TLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDL 834 (956)
Q Consensus 790 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l 834 (956)
.++...+..|.++++|+.+++++|+++...+.+|.++++|+.++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777666788888888888888888888777778888888888753
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.4e-15 Score=145.03 Aligned_cols=129 Identities=20% Similarity=0.245 Sum_probs=100.4
Q ss_pred CccCcEEEccCCccc-ccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccc
Q 046848 655 LVNLVVLSLKSNKFN-GSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTK 733 (956)
Q Consensus 655 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (956)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..++.++.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 66 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL--------------------------- 66 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence 456778888888877 67777777888888888888888765 444444443
Q ss_pred ccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc-CCccccCCCCCCEEECCC
Q 046848 734 SYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ-ITPKIGQLKSLDFLDLSR 812 (956)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~ 812 (956)
++|+|++|++++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++
T Consensus 67 ------------------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 67 ------------------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp ------------------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred ------------------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 7888888888877888888888888888888888863 347788888889999998
Q ss_pred CccCcCCc---ccccCCCCCCeEECcC
Q 046848 813 NQFFGSIP---SSLSQLSRLSVMDLSY 836 (956)
Q Consensus 813 N~l~~~ip---~~l~~l~~L~~L~ls~ 836 (956)
|++++..+ ..+..+++|++||+++
T Consensus 123 N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 123 CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcccchHHHHHHHHHHCCCcccccCCC
Confidence 88887766 5788888888888764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.7e-15 Score=147.78 Aligned_cols=83 Identities=28% Similarity=0.247 Sum_probs=53.9
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccC-CccccCCCCCCEEECCCCccCcCCc---ccccCCCCCCeEE
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQI-TPKIGQLKSLDFLDLSRNQFFGSIP---SSLSQLSRLSVMD 833 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~~L~~L~ 833 (956)
++|+|++|++++.+|..+..+++|+.|+|++|++++.. +..++.+++|+.|++++|++++..+ ..+..+++|++||
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 56666666666556666666667777777777766421 2566667777777777777765544 4666677777777
Q ss_pred CcCCcce
Q 046848 834 LSYNNLS 840 (956)
Q Consensus 834 ls~N~l~ 840 (956)
+++|.+.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 7777664
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.5e-15 Score=146.62 Aligned_cols=136 Identities=25% Similarity=0.246 Sum_probs=97.9
Q ss_pred CCCcEEecCCcccc-ccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCccc
Q 046848 631 SQLTLMDLGKNGLS-GEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHE 709 (956)
Q Consensus 631 ~~L~~L~Ls~N~l~-~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~ 709 (956)
++|+.|++++|+++ +.+|..+. .+++|++|++++|.+++. ..+..+++|+.|++++|++++.+|..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--- 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--- 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence 55666666666665 56666544 577777777777777654 567777888888888888877666666555555
Q ss_pred ccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCC-chhhhccccCCEEEccc
Q 046848 710 KGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEV-PEEIMDLAGLIALNLSR 788 (956)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~ 788 (956)
++|+|++|++++.. +..+..+++|+.|++++
T Consensus 98 ------------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 98 ------------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp ------------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred ------------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 77888888887542 26778888888888888
Q ss_pred ccccccCC---ccccCCCCCCEEECCCCccCcCCcc
Q 046848 789 NTLTGQIT---PKIGQLKSLDFLDLSRNQFFGSIPS 821 (956)
Q Consensus 789 N~l~~~ip---~~l~~l~~L~~L~Ls~N~l~~~ip~ 821 (956)
|.+++..+ ..+..+++|++|++++|.+. .+|+
T Consensus 130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 88885544 47888888888888888887 3443
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=2.9e-15 Score=163.53 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=53.8
Q ss_pred CCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCc-EEecCCccccccCChhHhhcCccCcE
Q 046848 582 FDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLT-LMDLGKNGLSGEIPTWIGEGLVNLVV 660 (956)
Q Consensus 582 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~ip~~~~~~l~~L~~ 660 (956)
+++|+.+++++|+++...+.+|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ +++ .|+...|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 445555555555555444445555555555555555 4444445555555555 555555 444 455444445555555
Q ss_pred EEccCCcccccCCccccCCCCcCEEe
Q 046848 661 LSLKSNKFNGSIPLQLCHLANVQILD 686 (956)
Q Consensus 661 L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (956)
+++++|+++...+.+|.++++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 55555555544444555555555554
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=9e-15 Score=145.74 Aligned_cols=129 Identities=27% Similarity=0.403 Sum_probs=103.4
Q ss_pred cEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCc
Q 046848 634 TLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSN 713 (956)
Q Consensus 634 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 713 (956)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+.++++|+.|+|++|+|++..+..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 46777777776 6776543 47788888888877 566778888888888888888887777777766665
Q ss_pred ccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccc
Q 046848 714 LTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTG 793 (956)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 793 (956)
++|+|++|+|++..|..|..+++|+.|+|++|+|++
T Consensus 81 --------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 81 --------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp --------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred --------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 788888888888888888899999999999999997
Q ss_pred cCCccccCCCCCCEEECCCCccCcC
Q 046848 794 QITPKIGQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 794 ~ip~~l~~l~~L~~L~Ls~N~l~~~ 818 (956)
..+..|..+++|+.|+|++|++...
T Consensus 117 ~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 117 VPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCEECS
T ss_pred eChhhhhcCccccEEEeCCCCeecC
Confidence 6666788999999999999998753
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=5.9e-15 Score=140.70 Aligned_cols=128 Identities=22% Similarity=0.234 Sum_probs=102.6
Q ss_pred CceeEEECCCCCCC-CCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEe
Q 046848 559 HKLDYIDLSNNLLS-GRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMD 637 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 637 (956)
++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 57888888888888 67888888888899999999888865 6788888888888888888877888888888888888
Q ss_pred cCCcccccc-CChhHhhcCccCcEEEccCCcccccCC---ccccCCCCcCEEeccC
Q 046848 638 LGKNGLSGE-IPTWIGEGLVNLVVLSLKSNKFNGSIP---LQLCHLANVQILDLSS 689 (956)
Q Consensus 638 Ls~N~l~~~-ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 689 (956)
+++|++++. .|..+. .+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888742 225554 68888888888888886555 4677888888888764
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.7e-14 Score=142.00 Aligned_cols=133 Identities=29% Similarity=0.282 Sum_probs=108.8
Q ss_pred CcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848 633 LTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712 (956)
Q Consensus 633 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 712 (956)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..++.|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 467777777777 677544 3578888888888887666677888999999999999987766666666555
Q ss_pred cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT 792 (956)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 792 (956)
++|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus 79 ---------------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 79 ---------------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp ---------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ---------------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 88999999999877777889999999999999999
Q ss_pred ccCCccccCCCCCCEEECCCCccCcCCc
Q 046848 793 GQITPKIGQLKSLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 793 ~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 820 (956)
+..+..+..+++|+.|++++|++++..|
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 114 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7666667889999999999999998765
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=4.4e-16 Score=156.43 Aligned_cols=150 Identities=25% Similarity=0.297 Sum_probs=90.3
Q ss_pred CCcEEecCCccccccCCh------hHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcccccc
Q 046848 632 QLTLMDLGKNGLSGEIPT------WIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705 (956)
Q Consensus 632 ~L~~L~Ls~N~l~~~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 705 (956)
.++.++++.+.+.|.+|. .+. .+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..++.
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 344444444444444333 444 46666666666666654 44 5666666666666666665 34444433333
Q ss_pred CcccccCcccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEE
Q 046848 706 MTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALN 785 (956)
Q Consensus 706 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 785 (956)
| +.|+|++|++++ +| .+..+++|+.|+
T Consensus 95 L---------------------------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 95 L---------------------------------------------------EELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp C---------------------------------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred C---------------------------------------------------CEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 3 667777777764 34 567777777777
Q ss_pred cccccccccCC-ccccCCCCCCEEECCCCccCcCCccc----------ccCCCCCCeEECcCCcce
Q 046848 786 LSRNTLTGQIT-PKIGQLKSLDFLDLSRNQFFGSIPSS----------LSQLSRLSVMDLSYNNLS 840 (956)
Q Consensus 786 Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~ls~N~l~ 840 (956)
|++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|+.|| +|+++
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777764222 35677777777777777777665543 66777777776 55544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.5e-14 Score=137.52 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=40.2
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCc--cccCCCCCCEEECCCCccCcCCcc----cccCCCCCCe
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITP--KIGQLKSLDFLDLSRNQFFGSIPS----SLSQLSRLSV 831 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l~~~ip~----~l~~l~~L~~ 831 (956)
++|+|++|++++..+..+..+++|+.|+|++|+++ .+|. .++.+++|+.|++++|+++. +|. .+..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccce
Confidence 34444444444332233344555555555555553 3333 45555555555555555552 333 2555566666
Q ss_pred EECcCCcce
Q 046848 832 MDLSYNNLS 840 (956)
Q Consensus 832 L~ls~N~l~ 840 (956)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 666665543
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=7.7e-16 Score=154.64 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=37.6
Q ss_pred eEEEcCCCCCCCCCc-hhhhccccCCEEEcccccccccCCcc----------ccCCCCCCEEECCCCccCc
Q 046848 758 KILDLSSNKLGGEVP-EEIMDLAGLIALNLSRNTLTGQITPK----------IGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~ 817 (956)
+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 566666666664322 35667777777777777777665543 67777777776 666653
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=1e-12 Score=146.38 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=159.6
Q ss_pred ceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecC
Q 046848 560 KLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLG 639 (956)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 639 (956)
+|+.+.+.. .++...+.+|.+|++|+.+++++|+++.....+|. +.+|+.+.+..+ ++.+-..+|.+|++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 456666654 45545566788888888888888888866666666 578888888754 776777788888888888888
Q ss_pred CccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCC-----CCcChhccccccCcccccCcc
Q 046848 640 KNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNIS-----GIIPKCFNNFTAMTHEKGSNL 714 (956)
Q Consensus 640 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~~~~~~~ 714 (956)
.| ++ .|+...|.+ .+|+.+.+ .+.++..-+.+|.++++|+.+++.+|.+. ...+.+|.++++|
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-------- 302 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-------- 302 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence 75 55 777777754 78888888 45566555677888888888888887765 2334455555554
Q ss_pred cccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccccc
Q 046848 715 TLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQ 794 (956)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 794 (956)
+.++|. +.++..-...|.++++|+.++|..| ++..
T Consensus 303 -------------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 303 -------------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp -------------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred -------------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 677777 4466556677888888888888655 6656
Q ss_pred CCccccCCCCCCEEECCCCccCcCCcccccCCC-CCCeEECcCCcc
Q 046848 795 ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLS-RLSVMDLSYNNL 839 (956)
Q Consensus 795 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l 839 (956)
-+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 67788888 899999998888877777777774 677787776654
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.8e-13 Score=133.26 Aligned_cols=88 Identities=24% Similarity=0.219 Sum_probs=80.4
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 837 (956)
++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 78999999999888889999999999999999999777777899999999999999999888888999999999999999
Q ss_pred cceecCCC
Q 046848 838 NLSGKIPS 845 (956)
Q Consensus 838 ~l~g~ip~ 845 (956)
+++|.++.
T Consensus 113 ~~~c~c~~ 120 (170)
T 3g39_A 113 PWDCACSD 120 (170)
T ss_dssp CBCTTBGG
T ss_pred CCCCCchh
Confidence 99998763
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2e-13 Score=134.01 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=108.9
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
.+|+.|++++|+++. +|......++|+.|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 19 ~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 689999999999984 455333344999999999999875 57889999999999999999776666799999999999
Q ss_pred CCccccccCCh--hHhhcCccCcEEEccCCcccccCCcc----ccCCCCcCEEeccCCcCCC
Q 046848 639 GKNGLSGEIPT--WIGEGLVNLVVLSLKSNKFNGSIPLQ----LCHLANVQILDLSSNNISG 694 (956)
Q Consensus 639 s~N~l~~~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~ 694 (956)
++|++. .+|. .+. .+++|++|++++|++. .+|.. +..+++|+.||+++|.+..
T Consensus 96 ~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999996 7776 555 7999999999999998 45654 8889999999999998763
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=4.6e-12 Score=141.04 Aligned_cols=126 Identities=8% Similarity=0.078 Sum_probs=69.3
Q ss_pred eeEEECCCCCCCCCCCccccCCCCCCEEEcCCCccc-----ccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcE
Q 046848 561 LDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFF-----GKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTL 635 (956)
Q Consensus 561 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 635 (956)
|+.+.+ .+.++.....+|.++++|+.+++.+|.+. ...+.+|.++++|+.+++.+ .++.+-..+|.+|++|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 444444 22333334455666666666666665543 34445566666666666663 355555556666666666
Q ss_pred EecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCC-CcCEEeccCCc
Q 046848 636 MDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLA-NVQILDLSSNN 691 (956)
Q Consensus 636 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~ 691 (956)
++|..| ++ .|+...|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.
T Consensus 328 l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 328 LTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 666443 44 5555555555 666666666665544444455553 45555555543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.4e-13 Score=130.30 Aligned_cols=87 Identities=24% Similarity=0.225 Sum_probs=77.3
Q ss_pred eEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCC
Q 046848 758 KILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYN 837 (956)
Q Consensus 758 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 837 (956)
+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|+.+++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 78899999998888888999999999999999999766666789999999999999999777777999999999999999
Q ss_pred cceecCC
Q 046848 838 NLSGKIP 844 (956)
Q Consensus 838 ~l~g~ip 844 (956)
++.|.++
T Consensus 116 ~~~c~~~ 122 (174)
T 2r9u_A 116 PWDCECR 122 (174)
T ss_dssp CBCTTBG
T ss_pred Ccccccc
Confidence 9998765
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=1.6e-12 Score=126.41 Aligned_cols=109 Identities=25% Similarity=0.291 Sum_probs=81.7
Q ss_pred CcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCccccccccccccccccccccccccc
Q 046848 658 LVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFD 737 (956)
Q Consensus 658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (956)
.+++++++|.++ .+|..+. ++|+.|+|++|+|++..|..|..++.|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L------------------------------- 56 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQL------------------------------- 56 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence 455666666665 3554442 677777777777777777767666555
Q ss_pred ceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCc
Q 046848 738 KAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFG 817 (956)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 817 (956)
++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|+|++|+++.
T Consensus 57 --------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 57 --------------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp --------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred --------------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 778888888887666677888889999999999987666678899999999999999886
Q ss_pred CCc
Q 046848 818 SIP 820 (956)
Q Consensus 818 ~ip 820 (956)
..+
T Consensus 117 ~c~ 119 (170)
T 3g39_A 117 ACS 119 (170)
T ss_dssp TBG
T ss_pred Cch
Confidence 543
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=2.5e-11 Score=135.92 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=78.1
Q ss_pred CCCcccCCCCCCcEEECCCCcCcccc-ccccCCCCCCEEEccCCCCCCcchHHHhhcCCCCccCCCCEEEccCCcCcccC
Q 046848 281 SIPEAFGHMPSLNTLFLASNQFREIP-KSLGNMCNLKSLTLSYNTLRGDLSEIIQNLSDGCTKTSLAWLFLDSNEITGSL 359 (956)
Q Consensus 281 ~~p~~l~~l~~L~~L~Ls~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~ 359 (956)
....+|.++.+|+.+.+.. .++.|+ .+|.++++|+.+++..+ ++......|..+. +|+.+.+..+-..-..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~------~L~~i~~p~~l~~i~~ 133 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY------ALKSILLPLMLKSIGV 133 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT------TCCCCCCCTTCCEECT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc------cchhhcccCceeeecc
Confidence 3445677777788887764 366654 46777778887777654 3323333444444 5555555433221111
Q ss_pred CCCCCCCCCCEEEeeccccccccchhhcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCCCC
Q 046848 360 PNFGGFSSLKRLSIANNRLNGTINKSVGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIPPF 439 (956)
Q Consensus 360 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 439 (956)
..|.++..++...... .......+|..+++|+.+.+.++. . .++...|.++++|+.+.+..+ ++......|....
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 2244443322222211 112223456666667766665442 2 123334566666666666554 3333444444444
Q ss_pred CcceEEcCC
Q 046848 440 QLSQVNLGS 448 (956)
Q Consensus 440 ~L~~L~L~~ 448 (956)
.|+.+.+..
T Consensus 209 ~L~~i~~~~ 217 (394)
T 4fs7_A 209 LLENMEFPN 217 (394)
T ss_dssp TCCBCCCCT
T ss_pred ccceeecCC
Confidence 555444433
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=4.1e-12 Score=123.96 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=78.0
Q ss_pred cEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccCcccccccccccccccccccccccccc
Q 046848 659 VVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDK 738 (956)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (956)
+.+++++|++. .+|..+. ++|+.|+|++|+|++..|..|.+++.|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------- 59 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------------------- 59 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence 45666666664 4555443 677777777777777767666666555
Q ss_pred eeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcC
Q 046848 739 AVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGS 818 (956)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 818 (956)
++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|+.+++|+.|+|++|++...
T Consensus 60 -------------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 60 -------------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp -------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred -------------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 6778888888766666677888888999999998866556688899999999999998854
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=6.3e-14 Score=154.58 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=34.5
Q ss_pred eEEEcCCCCCCCC----CchhhhccccCCEEEccccccccc----CCccccCCCCCCEEECCCCccCcCCcccc
Q 046848 758 KILDLSSNKLGGE----VPEEIMDLAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDLSRNQFFGSIPSSL 823 (956)
Q Consensus 758 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 823 (956)
++|||++|.|++. ++..+...++|+.|+|++|.|++. ++..+...++|++|||++|.|+..-...+
T Consensus 186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 5555665555532 234445555666666666666542 22333445566666666666654433333
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=1.5e-10 Score=129.43 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=17.2
Q ss_pred hhhhcccceeEEEeeCCCCCCCccchhhhccCCcceEecc
Q 046848 457 KWLRNQNQILSLDISNSGISDTVPNWFWNQTYNLSFFNLS 496 (956)
Q Consensus 457 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~Ls 496 (956)
..|.++++|+.+.+.++.. .++...+..+.+|+.+++.
T Consensus 156 ~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCC
T ss_pred hhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcC
Confidence 3455556666666554321 2333333334444444443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=3.1e-13 Score=149.05 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=83.3
Q ss_pred CCcCEEEccCceeeeeCCccc-cCCCCCcEEecCCccccccCChhHhh----cCccCcEEEccCCcccc----cCCcccc
Q 046848 607 KNLQSLSLYNNRLTGELPSFF-TNGSQLTLMDLGKNGLSGEIPTWIGE----GLVNLVVLSLKSNKFNG----SIPLQLC 677 (956)
Q Consensus 607 ~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~ip~~~~~----~l~~L~~L~L~~N~l~~----~~p~~l~ 677 (956)
++|++|+|++|.++......+ ..+++|+.|+|++|.+++.-...+.+ ..++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 344455555554432211111 12335566666666655332222221 23556666666666653 2333445
Q ss_pred CCCCcCEEeccCCcCCCCcC----hhccccccCcccccCcccccccccccccccccccccccccceeEEecCccceeccc
Q 046848 678 HLANVQILDLSSNNISGIIP----KCFNNFTAMTHEKGSNLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQST 753 (956)
Q Consensus 678 ~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (956)
..++|++|+|++|.++.... ..+...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-------------------------------------------------- 210 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRN-------------------------------------------------- 210 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGC--------------------------------------------------
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcC--------------------------------------------------
Confidence 66777777777777764321 122221
Q ss_pred ccceeEEEcCCCCCCCC----CchhhhccccCCEEEcccccccccCCccccCCC-----CCCEEE--CCCCccC
Q 046848 754 LGLVKILDLSSNKLGGE----VPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK-----SLDFLD--LSRNQFF 816 (956)
Q Consensus 754 l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-----~L~~L~--Ls~N~l~ 816 (956)
+.|+.|||++|.|++. ++..+...+.|++|||++|.|++.....+..+. .|+.+. +..|.++
T Consensus 211 -~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 211 -RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp -SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred -CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 2347788888887753 344555678888999999988765544444332 155555 5555544
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=2.3e-11 Score=133.80 Aligned_cols=85 Identities=21% Similarity=0.109 Sum_probs=46.1
Q ss_pred eEEEcCC-CCCCCCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcC
Q 046848 758 KILDLSS-NKLGGEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSY 836 (956)
Q Consensus 758 ~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 836 (956)
+.|+|++ |+|++..|..|.++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 4555553 555544445555555555555555555555555555555555555555555544444444443 55555555
Q ss_pred CcceecC
Q 046848 837 NNLSGKI 843 (956)
Q Consensus 837 N~l~g~i 843 (956)
|+|.|.+
T Consensus 113 N~~~c~c 119 (347)
T 2ifg_A 113 NPLHCSC 119 (347)
T ss_dssp SCCCCCG
T ss_pred CCccCCC
Confidence 5555543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=5e-11 Score=131.05 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=68.8
Q ss_pred EEecCCc-cccccCChhHhhcCccCcEEEccC-CcccccCCccccCCCCcCEEeccCCcCCCCcChhccccccCcccccC
Q 046848 635 LMDLGKN-GLSGEIPTWIGEGLVNLVVLSLKS-NKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTAMTHEKGS 712 (956)
Q Consensus 635 ~L~Ls~N-~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 712 (956)
.++++++ +++ .+|. +. .+++|++|+|++ |++.+..+..|.++++|+.|+|++|+|++..|..|.++++|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------ 82 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------ 82 (347)
T ss_dssp CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence 4577776 676 5776 54 567777777775 77776666667777777777777777776666666665555
Q ss_pred cccccccccccccccccccccccccceeEEecCccceecccccceeEEEcCCCCCCCCCchhhhccccCCEEEccccccc
Q 046848 713 NLTLISNYYTSLAYDSLKTTKSYFDKAVLTWKGSQYEYQSTLGLVKILDLSSNKLGGEVPEEIMDLAGLIALNLSRNTLT 792 (956)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 792 (956)
+.|||++|+|++..+..+..++ |+.|+|++|.+.
T Consensus 83 ---------------------------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 ---------------------------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ---------------------------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ---------------------------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6677777777655554554444 677777777665
Q ss_pred c
Q 046848 793 G 793 (956)
Q Consensus 793 ~ 793 (956)
.
T Consensus 117 c 117 (347)
T 2ifg_A 117 C 117 (347)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.05 E-value=2.2e-08 Score=111.78 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=73.9
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
..|+.+.+.++..+ ....+|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+-..+|.+|.+|+.+.|
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 45666666544332 444566777777777775 3444455566777777777777654 55555667777777777777
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcC
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNI 692 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (956)
..+ ++ .|....|.++++|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 342 p~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 342 PSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred Ccc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 544 55 6777667677777777777765432 3455666777776665544
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=1.6e-08 Score=113.00 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=32.1
Q ss_pred eCCccccCCCCCcEEecCCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccC
Q 046848 622 ELPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSS 689 (956)
Q Consensus 622 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 689 (956)
.-..+|.++..|+.+.+.++.. .+....+.++++|+.+.+. +.++..-..+|.++.+|+.+++..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred cccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 3444555666666665554432 3444444455555555553 223323334455555555555543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=1.3e-09 Score=118.96 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=45.1
Q ss_pred cceeEEEcCCCCCCCCCchhhh---ccccCCEEEccccccccc----CCccccCCCCCCEEECCCCccCcCCcccccC-C
Q 046848 755 GLVKILDLSSNKLGGEVPEEIM---DLAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQ-L 826 (956)
Q Consensus 755 ~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l 826 (956)
+.|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. +
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 3446666666666543333333 356677777777776653 3333445667777777777665433333332 2
Q ss_pred CCCCeEECcCCc
Q 046848 827 SRLSVMDLSYNN 838 (956)
Q Consensus 827 ~~L~~L~ls~N~ 838 (956)
...+++++|+
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 2456666655
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=1.1e-06 Score=97.33 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=98.3
Q ss_pred CceeEEECCCCCCCCCCCccccCCCCCCEEEcCCCcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEec
Q 046848 559 HKLDYIDLSNNLLSGRLPDCWSQFDSLAILNLANNSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDL 638 (956)
Q Consensus 559 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 638 (956)
..++.+.+..+ ++.....+|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++.....+|.+|++|+.+++
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 56666666544 33344566777888888888765 55455667788888888888654 55556667888888888888
Q ss_pred CCccccccCChhHhhcCccCcEEEccCCcccccCCccccCCCCcCEEeccCCcCCCCcChhcccccc
Q 046848 639 GKNGLSGEIPTWIGEGLVNLVVLSLKSNKFNGSIPLQLCHLANVQILDLSSNNISGIIPKCFNNFTA 705 (956)
Q Consensus 639 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 705 (956)
.++.++ .|+...|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+ ++.+-..+|.++..
T Consensus 294 ~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 294 DNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 888777 777777777888888888654 55444567888888888888654 55455566766543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=2.4e-06 Score=94.65 Aligned_cols=49 Identities=8% Similarity=0.062 Sum_probs=25.6
Q ss_pred hcCCCCCCEEECcCccCccccCHHhhhCCCCCCEEEcCCCcccccccCCcCC
Q 046848 386 VGQLVKLESLFLHNNSLRGVISEAFLSNLSNLTILYLADNSLTLEFSHDWIP 437 (956)
Q Consensus 386 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 437 (956)
+....+|+.+.+... ++.+... .|.++.+|+.+.+..+ ++.....+|..
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~-aF~~C~~L~~I~lp~~-v~~Ig~~aF~~ 90 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEA-NFNSCYNMTKVTVAST-VTSIGDGAFAD 90 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTT-TTTTCTTCCEEEECTT-CCEECTTTTTT
T ss_pred cccccCCEEEEeCCC-ccChHHH-HhhCCCCCCEEEeCCc-ceEechhhhcC
Confidence 444556777666542 3333333 3666777777766543 44444444433
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=1.8e-07 Score=101.84 Aligned_cols=139 Identities=24% Similarity=0.270 Sum_probs=83.8
Q ss_pred CCcccCCCCCCcEEECCCCcCccccccccCCCCCCEEEccCCCCCCcchHHHh--hcCCCCccCCCCEEEccC--CcCcc
Q 046848 282 IPEAFGHMPSLNTLFLASNQFREIPKSLGNMCNLKSLTLSYNTLRGDLSEIIQ--NLSDGCTKTSLAWLFLDS--NEITG 357 (956)
Q Consensus 282 ~p~~l~~l~~L~~L~Ls~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~~~~~~L~~L~Ls~--n~l~~ 357 (956)
+...+..+|+|+.|++++|.-..++. +. +++|++|++..|.++......+. .++ +|+.|+|+. |...+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGF 235 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEecccccccc
Confidence 33455677888999888874223444 33 78899999988887755545554 455 888888753 22111
Q ss_pred c------CCCC--CCCCCCCEEEeeccccccccchhhc---CCCCCCEEECcCccCccccCHHhh---hCCCCCCEEEcC
Q 046848 358 S------LPNF--GGFSSLKRLSIANNRLNGTINKSVG---QLVKLESLFLHNNSLRGVISEAFL---SNLSNLTILYLA 423 (956)
Q Consensus 358 ~------~~~~--~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~Ls 423 (956)
. .+.+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.....+. ..+++|+.|+++
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 1 0112 3467788888877777654433332 466777777777777654322221 335666666666
Q ss_pred CCccc
Q 046848 424 DNSLT 428 (956)
Q Consensus 424 ~n~l~ 428 (956)
+|.++
T Consensus 316 ~n~i~ 320 (362)
T 2ra8_A 316 YNYLS 320 (362)
T ss_dssp SBBCC
T ss_pred CCcCC
Confidence 66554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=1.3e-07 Score=92.79 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=33.1
Q ss_pred hccccCCEEEccccccccc----CCccccCCCCCCEEEC--CCCccCcC----CcccccCCCCCCeEECcCCcce
Q 046848 776 MDLAGLIALNLSRNTLTGQ----ITPKIGQLKSLDFLDL--SRNQFFGS----IPSSLSQLSRLSVMDLSYNNLS 840 (956)
Q Consensus 776 ~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~ 840 (956)
...+.|++|+|++|.|++. +...+...++|++|+| ++|.+... +.+.+...+.|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3344555555555555432 2334444555666666 55555432 2233344455666666666553
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=5.5e-07 Score=92.74 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=31.9
Q ss_pred ccceeEEEcCCCCCCC--CCchhhhccccCCEEEcccccccccCCccccCCC--CCCEEECCCCccCcCCc
Q 046848 754 LGLVKILDLSSNKLGG--EVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLK--SLDFLDLSRNQFFGSIP 820 (956)
Q Consensus 754 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~ip 820 (956)
++.|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. +.+..+. +|++|+|++|.+++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3444555555555554 2334445555555555555555542 2233333 55555555555554443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=1.8e-07 Score=96.34 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=20.2
Q ss_pred cCccCcEEEccCCcccc--cCCccccCCCCcCEEeccCCcCC
Q 046848 654 GLVNLVVLSLKSNKFNG--SIPLQLCHLANVQILDLSSNNIS 693 (956)
Q Consensus 654 ~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~ 693 (956)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 35555555555555554 23334444555555555555554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.18 E-value=7.9e-07 Score=87.20 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=41.7
Q ss_pred cccCCCCCCcEEECCCC-cCcc-----ccccccCCCCCCEEEccCCCCCCcchHH----HhhcCCCCccCCCCEEEccCC
Q 046848 284 EAFGHMPSLNTLFLASN-QFRE-----IPKSLGNMCNLKSLTLSYNTLRGDLSEI----IQNLSDGCTKTSLAWLFLDSN 353 (956)
Q Consensus 284 ~~l~~l~~L~~L~Ls~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~~~~~~~L~~L~Ls~n 353 (956)
..+...+.|++|+|++| .+.. +...+...++|++|+|++|.+....... +...+ +|++|+|++|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~------~L~~L~L~~N 103 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN------TLKSLNVESN 103 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS------SCCEEECCSS
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC------CcCEEECcCC
Confidence 34556677888888887 7764 3455666778888888888876543322 22223 5555555555
Q ss_pred cCc
Q 046848 354 EIT 356 (956)
Q Consensus 354 ~l~ 356 (956)
.+.
T Consensus 104 ~i~ 106 (185)
T 1io0_A 104 FIS 106 (185)
T ss_dssp CCC
T ss_pred cCC
Confidence 554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=4e-06 Score=79.78 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=16.3
Q ss_pred CCCEEeCCCCCCCCCCCCccccCCCCCCEEecCCC
Q 046848 114 HLTYLDLSGNNFSGSSIPEFIGSLSKLSYLGLSNT 148 (956)
Q Consensus 114 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n 148 (956)
.|++||++++.++.. --..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCC
Confidence 455555555555433 1223344555555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=3.4e-06 Score=80.33 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=67.5
Q ss_pred CCCCEEecCCCCCCCCCCccCCCCCCCcEEECCCCCCCCCCCccccCCC----CCCcEEeccccc-CCCCchhHHhhcCC
Q 046848 138 SKLSYLGLSNTEFAGPIPLQLGNLSRLQVLDIGFNSLISGENLEWLSHL----SSLIYLDLSFSN-LSKFSNWMQVLSKL 212 (956)
Q Consensus 138 ~~L~~L~Ls~n~l~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l 212 (956)
.+|++||+++|.++..--..+.++++|++|+|++|...+......++.+ ++|++|++++|. +++ .-...++.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcC
Confidence 5799999999988765556678899999999999975466666667765 479999999885 655 335667889
Q ss_pred CCCCEEEecCCCC
Q 046848 213 DSLKALYLISCDL 225 (956)
Q Consensus 213 ~~L~~L~l~~~~~ 225 (956)
++|++|++++|.-
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 9999999999864
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.00061 Score=61.79 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=46.0
Q ss_pred EEEccccccc-ccCCccccCCCCCCEEECCCCccCcCCcccccCCCCCCeEECcCCcceecC
Q 046848 783 ALNLSRNTLT-GQITPKIGQLKSLDFLDLSRNQFFGSIPSSLSQLSRLSVMDLSYNNLSGKI 843 (956)
Q Consensus 783 ~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 843 (956)
.++.+++.++ ..+|..+ -++|+.|+|++|+|+...+..|..+++|+.|+|++|+|.|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 6677777775 3455443 246888999999998777778888999999999999998875
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.93 E-value=0.00021 Score=69.30 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCCCCcCEEEccCceeeee----CCccccCCCCCcEEecCCccccccCChhHhhcC---ccCcEEEccCC---cccc---
Q 046848 604 GFLKNLQSLSLYNNRLTGE----LPSFFTNGSQLTLMDLGKNGLSGEIPTWIGEGL---VNLVVLSLKSN---KFNG--- 670 (956)
Q Consensus 604 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l---~~L~~L~L~~N---~l~~--- 670 (956)
..-+.|+.|+|++|+|... +...+..-+.|+.|+|++|.|.+.--..+.+.+ +.|++|+|++| .+..
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 3334455555555544421 222333445555555555555533222222222 34666666543 2221
Q ss_pred -cCCccccCCCCcCEEeccCCcC
Q 046848 671 -SIPLQLCHLANVQILDLSSNNI 692 (956)
Q Consensus 671 -~~p~~l~~l~~L~~L~Ls~N~l 692 (956)
.+...+..-+.|+.|+++.|.+
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhCCCcCeEeccCCCc
Confidence 1233445556777777776654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.69 E-value=0.0013 Score=63.67 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=22.7
Q ss_pred CCCCCcEEECCCC-cCcc-----ccccccCCCCCCEEEccCCCCCC
Q 046848 288 HMPSLNTLFLASN-QFRE-----IPKSLGNMCNLKSLTLSYNTLRG 327 (956)
Q Consensus 288 ~l~~L~~L~Ls~n-~l~~-----ip~~l~~l~~L~~L~Ls~n~l~~ 327 (956)
+-+.|++|+|++| .+.. +-+.+..-+.|+.|+|++|.+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 3455666666654 5543 33445555666666666666653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.0058 Score=55.25 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=47.7
Q ss_pred eEEEcCCCCCC-CCCchhhhccccCCEEEcccccccccCCccccCCCCCCEEECCCCccC
Q 046848 758 KILDLSSNKLG-GEVPEEIMDLAGLIALNLSRNTLTGQITPKIGQLKSLDFLDLSRNQFF 816 (956)
Q Consensus 758 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 816 (956)
..+|-+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57899999997 45665432 46999999999999777777899999999999999886
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=43.10 E-value=7.1 Score=25.97 Aligned_cols=22 Identities=32% Similarity=0.535 Sum_probs=13.1
Q ss_pred eeeeehhhHHHHHHHhhhhhhh
Q 046848 898 GFYVSLILGFFVGFWGFCGTLL 919 (956)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~ 919 (956)
+.++++++|.++++.++++..+
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHHHHHHHHH
Confidence 3466777777766655544443
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=29.74 E-value=12 Score=25.65 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=9.1
Q ss_pred eeehhhHHHHHHHhhhhhhhcc
Q 046848 900 YVSLILGFFVGFWGFCGTLLVK 921 (956)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~ 921 (956)
+++.++|+++.+++++++.+|.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~ 35 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhe
Confidence 4445555443333333333333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.44 E-value=51 Score=27.37 Aligned_cols=13 Identities=0% Similarity=0.072 Sum_probs=5.0
Q ss_pred cccCCCCCCEEEc
Q 046848 578 CWSQFDSLAILNL 590 (956)
Q Consensus 578 ~~~~l~~L~~L~L 590 (956)
+|.+|++|+.+.+
T Consensus 15 aF~~c~~L~~i~i 27 (100)
T 2lz0_A 15 LFAGNTVIREITV 27 (100)
T ss_dssp TTTTCTTCCCEEE
T ss_pred HhcCCCCCcEEEc
Confidence 3333333333333
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.86 E-value=84 Score=26.02 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=36.3
Q ss_pred CcccccCCCCcCCCCCcCEEEccCceeeeeCCccccCCCCCcEEecCCc
Q 046848 593 NSFFGKIPDSIGFLKNLQSLSLYNNRLTGELPSFFTNGSQLTLMDLGKN 641 (956)
Q Consensus 593 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 641 (956)
..++.+-..+|.++++|+.+.+-.+ ++.+-..+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445555678888999999988775 55566778999999999888654
No 169
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=24.14 E-value=25 Score=22.21 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=9.4
Q ss_pred hhhHHHHHHHhhhhhhhcc
Q 046848 903 LILGFFVGFWGFCGTLLVK 921 (956)
Q Consensus 903 ~~~~~~~~~~~~~~~~~~~ 921 (956)
+++|++++|.++.+.+++.
T Consensus 12 ~i~gl~vif~~lg~tflyw 30 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEE
Confidence 4455555555444444443
Done!