BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046849
(760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 476 VSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKV 535
V A ++ + GN C +C P P+WAS+NLG+ LCI+CSG+HR+LGVH SKVRSLTLD
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--S 92
Query: 536 WEPTILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINA 595
WEP ++ L LGN N I+E + +V+KP KE +I+A
Sbjct: 93 WEPELVKLMCELGNVIINQIYE------------ARVEAMAVKKPGPSCSRQEKEAWIHA 140
Query: 596 KYVEKLLVIR 605
KYVEK + +
Sbjct: 141 KYVEKKFLTK 150
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 476 VSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKV 535
V A ++ + GN C +C P P+WAS+NLG+ LCI+CSG+HR+LGVH SKVRSLTLD
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--S 92
Query: 536 WEPTILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINA 595
WEP ++ L LGN N I+E + +V+KP KE +I+A
Sbjct: 93 WEPELVKLMCELGNVIINQIYE------------ARVEAMAVKKPGPSCSRQEKEAWIHA 140
Query: 596 KYVEKLLVIR 605
KYVEK + +
Sbjct: 141 KYVEKKFLTK 150
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 476 VSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKV 535
V A ++ + GN C +C P P+WAS+NLG+ LCI+CSG+HR+LGVH SKVRSLTLD
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--S 92
Query: 536 WEPTILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINA 595
WEP ++ L LGN N I+E + +V+KP KE +I+A
Sbjct: 93 WEPELVKLMCELGNVIINQIYE------------ARVEAMAVKKPGPSCSRQEKEAWIHA 140
Query: 596 KYVEKLLVIR 605
KYVEK + +
Sbjct: 141 KYVEKKFLTK 150
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 125/251 (49%), Gaps = 34/251 (13%)
Query: 480 LRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPT 539
++++ GND+C +C APDP W S NLGIL CIECSG+HR LGVH S+++SLTLD V +
Sbjct: 11 VQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VLGTS 68
Query: 540 ILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVE 599
L L ++GNA N I E L +D P P S + ++ YI AKY+E
Sbjct: 69 ELLLAKNIGNAGFNEIMECCLPSED----------PVKPNPGSDMI--ARKDYITAKYME 116
Query: 600 KLLVIRDTSDAKSRTTSIWEAVKTQN---LQEVYR--LIVTSDANIINTTFDDVVGVD-S 653
+ + +D ++ S+ EAVKT++ L + Y + +T + N D + +
Sbjct: 117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA 176
Query: 654 YHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLE 713
VD T +DF +N+G Q K G + LH C N L+
Sbjct: 177 VRSVDRTSLHIVDF----LVQNSGNLDKQTGK----------GSTALHYCCLTDNAECLK 222
Query: 714 LLIQFGADINM 724
LL++ A I +
Sbjct: 223 LLLRGKASIEI 233
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 21/144 (14%)
Query: 480 LRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPT 539
L Q PGN CA+C APDPDWAS LG+ +C+ CSG+HRN+ +SKV+S+ LD WE
Sbjct: 28 LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AWEEA 84
Query: 540 ILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSV-RKPCSKDVFHYKEQYINAKYV 598
++ S GN D + + +PS +P D +EQ+I AKY
Sbjct: 85 QVEFMASHGN--------------DAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYE 130
Query: 599 EKLLVIRDTSDAKS---RTTSIWE 619
+ + + + S R +W+
Sbjct: 131 RQEFIYPEKQEPYSAGYREGFLWK 154
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 21/144 (14%)
Query: 480 LRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPT 539
L Q PGN CA+C APDPDWAS LG+ +C+ CSG+HRN+ +SKV+S+ LD WE
Sbjct: 30 LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AWEEA 86
Query: 540 ILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSV-RKPCSKDVFHYKEQYINAKYV 598
++ S GN D + + +PS +P D +EQ+I AKY
Sbjct: 87 QVEFMASHGN--------------DAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYE 132
Query: 599 EKLLVIRDTSDAKS---RTTSIWE 619
+ + + + S R +W+
Sbjct: 133 RQEFIYPEKQEPYSAGYREGFLWK 156
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 22/154 (14%)
Query: 478 AILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWE 537
A ++ PGN C +C A DP W S NLG+L CI+CSGVHR LGV S+++SLTLD +
Sbjct: 34 AEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLG 91
Query: 538 PTILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPS--VRKPCSKDVFHYKEQYINA 595
P+ L L ++GN N + E +PS KP ++ + YI A
Sbjct: 92 PSELLLALNMGNTSFNEVME--------------AQLPSHGGPKPSAESDMGTRRDYIMA 137
Query: 596 KYVEKLLVIRDTSDAKSRTTSIWEAVKTQNLQEV 629
KYVE R T + + +W A+ ++L V
Sbjct: 138 KYVEHRFARRCTPEPQ----RLWTAICNRDLLSV 167
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 22/148 (14%)
Query: 484 PGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDL 543
PGN C +C A DP W S NLG+L CI+CSGVHR LGV S+++SLTLD + P+ L L
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLL 78
Query: 544 FGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPS--VRKPCSKDVFHYKEQYINAKYVEKL 601
++GN N + E L PS KP ++ + YI AKYVE
Sbjct: 79 ALNMGNTSFNEVMEAQL--------------PSHGGPKPSAESDMGTRRDYIMAKYVEHR 124
Query: 602 LVIRDTSDAKSRTTSIWEAVKTQNLQEV 629
R T + + +W A+ ++L V
Sbjct: 125 FARRCTPEPQ----RLWTAICNRDLLSV 148
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 486 NDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFG 545
N CA+C + P WAS N+G+ +CI C+G+HRNLGVHIS+V+S+ LD W +
Sbjct: 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQ 84
Query: 546 SLGNAYCNSIWEGLL 560
+GN N ++E L
Sbjct: 85 EMGNGKANRLYEAYL 99
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 476 VSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKV 535
+S +LR+ N CA+C A P WAS N+G+ +CI C+G+HRNLGVHIS+V+S+ LD
Sbjct: 20 LSKLLRE-EDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--Q 76
Query: 536 WEPTILDLFGSLGNAYCNSIWEGLL 560
W + +GN ++E L
Sbjct: 77 WTAEQIQCMQDMGNTKARLLYEANL 101
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 39/53 (73%)
Query: 480 LRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLD 532
LR +P N C +C A +P WAS+ G+ LCI+CSGVHR+LGVH+S +RS LD
Sbjct: 31 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELD 83
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 480 LRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPT 539
LR +P N +C +C A +P WAS+ G+ LCI+CSG HR+LGVH+S +RS LD W
Sbjct: 23 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWF 81
Query: 540 ILDLFGSLGNAYCNSI 555
L GNA +S
Sbjct: 82 QLRCMQVGGNASASSF 97
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 486 NDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFG 545
N+ C +C +PDW S+N GI LCI CSGVHR+LGVHIS VRS+ +D+ E L
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQ--LKYID 79
Query: 546 SLGNAYCNSIWE 557
GN C + E
Sbjct: 80 KGGNKKCQTYLE 91
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 486 NDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFG 545
N++C EC A +P W S+ GI +C+ECSG HR LGVH+S VRS+T+D W+ L+
Sbjct: 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 94
Query: 546 SLGNA 550
+ GNA
Sbjct: 95 AGGNA 99
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 486 NDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFG 545
N++C EC A +P W S+ GI +C+ECSG HR LGVH+S VRS+T+D W+ L+
Sbjct: 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 95
Query: 546 SLGNA 550
+ GNA
Sbjct: 96 AGGNA 100
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/427 (21%), Positives = 168/427 (39%), Gaps = 75/427 (17%)
Query: 7 LEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEA---LGVACSGDSAFADALEA-- 61
LEDSP + L EE A + + +LY+ + +A L A S E
Sbjct: 13 LEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQR 72
Query: 62 FGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKE 121
F G DD V S + +F EL++ +L +Q+ ++ +T+F DL +
Sbjct: 73 FPLGGDDEVMSS----TLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILT 128
Query: 122 SRRRFDKSIHAYDQAREKFVSL-KKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180
+ F + + +D A ++ L KK D + E+ ED+ S+ ++ + AL +
Sbjct: 129 LKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTL 188
Query: 181 EAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTYAQQSKEVANVEQDKLA 239
+ KKK LE + M + +FK+G + L+ ++E ++ + T Q + + + + +
Sbjct: 189 QYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQ 248
Query: 240 KRIQEFRTQAELDNLGVPVDVEHSVSADGIHVGGTVSYKNIEAVMRSSATGEVQTIKQGY 299
+ I++ ++ + P + V+ + G ++ +N ++ S+
Sbjct: 249 QTIEDLEVASDPLYVPDPDPTKFPVNRNLTRKAGYLNARNKTGLVSST------------ 296
Query: 300 LLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVXXXXXXXX 359
W R+F+ + G + D GG+
Sbjct: 297 -----------WDRQFYF----------------TQGGNLMSQARGDVAGGLAM------ 323
Query: 360 XXXXXXNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIIS--PVKTYTLQAETEADRMDW 417
D NC S + +D ED R CF+I S K+ LQAE++ D +W
Sbjct: 324 --------DIDNC-------SVMAVDCEDR--RYCFQITSFDGKKSSILQAESKKDHEEW 366
Query: 418 TSKITGV 424
I +
Sbjct: 367 ICTINNI 373
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 474 DSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLD 532
D+ I+R P N C +C + +P W SL+ + +C+ CS HR +GVHIS VRS LD
Sbjct: 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD 82
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/427 (20%), Positives = 162/427 (37%), Gaps = 75/427 (17%)
Query: 7 LEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEA---LGVACSGDSAFADALEA-- 61
LEDSP + L EE A + + +LY+ + +A L A S E
Sbjct: 33 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNELSAATHLTSKLLKEYEKQR 92
Query: 62 FGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKE 121
F G DD V S + +F EL++ +L +Q+ +T+F DL +
Sbjct: 93 FPLGGDDEVXSS----TLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILT 148
Query: 122 SRRRFDKSIHAYDQAREKFVSL-KKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180
+ F + + +D A ++ L KK D + E+ ED+ S+ ++ + AL +
Sbjct: 149 LKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNTL 208
Query: 181 EAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTYAQQSKEVANVEQDKLA 239
+ KKK LE + + +FK G + L+ ++E ++ + T Q + + + +
Sbjct: 209 QYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVRREXDSDIETXQ 268
Query: 240 KRIQEFRTQAELDNLGVPVDVEHSVSADGIHVGGTVSYKNIEAVMRSSATGEVQTIKQGY 299
+ I++ ++ + P + V+ + G ++ +N ++ S+
Sbjct: 269 QTIEDLEVASDPLYVPDPDPTDFPVNRNLTRKAGYLNARNKTGLVSST------------ 316
Query: 300 LLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVXXXXXXXX 359
W R+F+ + G + D GG+
Sbjct: 317 -----------WDRQFYF----------------TQGGNLXSQARGDVAGGLA------- 342
Query: 360 XXXXXXNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIIS--PVKTYTLQAETEADRMDW 417
D NC S +D ED R CF+I S K+ LQAE++ D +W
Sbjct: 343 -------XDIDNC-------SVXAVDCEDR--RYCFQITSFDGKKSSILQAESKKDHEEW 386
Query: 418 TSKITGV 424
I +
Sbjct: 387 ICTINNI 393
>pdb|2Z0O|A Chain A, Crystal Structure Of Appl1-Bar-Ph Domain
Length = 387
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/427 (21%), Positives = 163/427 (38%), Gaps = 75/427 (17%)
Query: 7 LEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEA---LGVACSGDSAFADALEA-- 61
LEDSP + L EE A + + +LY+ + +A L A S E
Sbjct: 15 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNELSAATHLTSKLLKEYEKQR 74
Query: 62 FGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKE 121
F G DD V S + +F EL++ +L +Q+ +T+F DL +
Sbjct: 75 FPLGGDDEVXSS----TLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILT 130
Query: 122 SRRRFDKSIHAYDQAREKFVSL-KKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180
+ F + + +D A ++ L KK D + E+ ED+ S+ ++ + AL +
Sbjct: 131 LKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNTL 190
Query: 181 EAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTYAQQSKEVANVEQDKLA 239
+ KKK LE + + +FK G + L+ ++E ++ + T Q + + + +
Sbjct: 191 QYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVRREXDSDIETXQ 250
Query: 240 KRIQEFRTQAELDNLGVPVDVEHSVSADGIHVGGTVSYKNIEAVMRSSATGEVQTIKQGY 299
+ I++ ++ + P + V+ + G ++ +N ++ S+
Sbjct: 251 QTIEDLEVASDPLYVPDPDPTKFPVNRNLTRKAGYLNARNKTGLVSST------------ 298
Query: 300 LLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVXXXXXXXX 359
W R+F+ + G + D GG+
Sbjct: 299 -----------WDRQFYF----------------TQGGNLXSQARGDVAGGLAX------ 325
Query: 360 XXXXXXNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIIS--PVKTYTLQAETEADRMDW 417
D NC S +D ED R CF+I S K+ LQAE++ D +W
Sbjct: 326 --------DIDNC-------SVXAVDCEDR--RYCFQITSFDGKKSSILQAESKKDHEEW 368
Query: 418 TSKITGV 424
I +
Sbjct: 369 ICTINNI 375
>pdb|2Z0N|A Chain A, Crystal Structure Of Appl1-Bar Domain
Length = 280
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 13/258 (5%)
Query: 7 LEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEA---LGVACSGDSAFADALEA-- 61
LEDSP + L EE A + + +LY+ + +A L A S E
Sbjct: 18 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNELSAATHLTSKLLKEYEKQR 77
Query: 62 FGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKE 121
F G DD V S + +F EL++ +L +Q+ +T+F DL +
Sbjct: 78 FPLGGDDEVXSS----TLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILT 133
Query: 122 SRRRFDKSIHAYDQAREKFVSL-KKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180
+ F + + +D A ++ L KK D + E+ ED+ S+ ++ + AL +
Sbjct: 134 LKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNTL 193
Query: 181 EAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTYAQQSKEVANVEQDKLA 239
+ KKK LE + + +FK G + L+ ++E ++ + T Q + + + +
Sbjct: 194 QYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVRREXDSDIETXQ 253
Query: 240 KRIQEFRTQAELDNLGVP 257
+ I++ + D L VP
Sbjct: 254 QTIEDLEVAS--DPLYVP 269
>pdb|2Q12|A Chain A, Crystal Structure Of Bar Domain Of Appl1
Length = 265
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 13/258 (5%)
Query: 7 LEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEA---LGVACSGDSAFADALEA-- 61
LEDSP + L EE A + + +LY+ + +A L A S E
Sbjct: 13 LEDSPQTRSLLGVFEEDATAISNYXNQLYQAXHRIYDAQNELSAATHLTSKLLKEYEKQR 72
Query: 62 FGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKE 121
F G DD V S + +F EL++ +L +Q+ +T+F DL +
Sbjct: 73 FPLGGDDEVXSS----TLQQFSKVIDELSSCHAVLSTQLADAXXFPITQFKERDLKEILT 128
Query: 122 SRRRFDKSIHAYDQAREKFVSL-KKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180
+ F + + +D A ++ L KK D + E+ ED+ S+ ++ + AL +
Sbjct: 129 LKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTXXHYFCALNTL 188
Query: 181 EAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTYAQQSKEVANVEQDKLA 239
+ KKK LE + + +FK G + L+ ++E ++ + T Q + + + +
Sbjct: 189 QYKKKIALLEPLLGYXQAQISFFKXGSENLNEQLEEFLANIGTSVQNVRREXDSDIETXQ 248
Query: 240 KRIQEFRTQAELDNLGVP 257
+ I++ + D L VP
Sbjct: 249 QTIEDLEVAS--DPLYVP 264
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 483 IPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILD 542
+P N C +C P + ++ +G +C CSG R L +V+S+++ + ++
Sbjct: 22 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMT--TFTQQEIE 78
Query: 543 LFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSVRKP 580
GN C IW GL D ++ IP R P
Sbjct: 79 FLQKHGNEVCKQIWLGLF-------DDRSSAIPDFRDP 109
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 483 IPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILD 542
+P N C +C P + ++ +G +C CSG R L +V+S+++ + ++
Sbjct: 17 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQE--IE 73
Query: 543 LFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEK 600
GN C IW GL D ++ IP R P ++++ KY +K
Sbjct: 74 FLQKHGNEVCKQIWLGLF-------DDRSSAIPDFRDP------QKVKEFLQEKYEKK 118
>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
Length = 407
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 86/431 (19%), Positives = 158/431 (36%), Gaps = 83/431 (19%)
Query: 7 LEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAF---- 62
L+DSP + L EE A L D +L + ++ A C + L A+
Sbjct: 36 LQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQN 95
Query: 63 ---GGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDA 119
G G ++ +S + F EL L Q+ ++ + +F DL +
Sbjct: 96 FALGKGDEEVIS------TLHYFSKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEV 149
Query: 120 KESRRRFDKSIHAYDQAREKFVSL-KKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALT 178
+ F + + +D + K+ L KK + + E+ +++ ++ S AL
Sbjct: 150 STLKDLFGLASNEHDLSMAKYSRLPKKKENEKVKTEVGKEVAAARRKQHLSSLQYYCALN 209
Query: 179 NIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSK-IEPYVHQVLTYAQQSKEVANVEQDK 237
++ +K+ +E + + +FK G ++ SK ++ ++ V Q + E +K
Sbjct: 210 ALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEK 269
Query: 238 LAKRIQEFRTQAELDNLGVPVDVEHSVSADGIHVGGTVSYKNIEAVMRSSATGEVQTIKQ 297
+ QE + V+ SV V +N+ +Q K
Sbjct: 270 MRVSQQEL------------LSVDESVYTPDSDVAAPQINRNL-----------IQ--KA 304
Query: 298 GYLLKRSSN--LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVXXXX 355
GYL R+ + W+R +F +QG + +G + GG+
Sbjct: 305 GYLNLRNKTGLVTTTWERLYFF--TQGGNLMCQPRGAVA--------------GGLI--- 345
Query: 356 XXXXXXXXXXNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISP--VKTYTLQAETEAD 413
+D NC S + +D ED R CF+I +P LQAE+ +
Sbjct: 346 -----------QDLDNC-------SVMAVDCEDR--RYCFQITTPNGKSGIILQAESRKE 385
Query: 414 RMDWTSKITGV 424
+W I +
Sbjct: 386 NEEWICAINNI 396
>pdb|2RLO|A Chain A, Split Ph Domain Of Pi3-Kinase Enhancer
Length = 128
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 295 IKQGYLLKRSSN-LRGDWKRRFFVLNSQGTLYYY 327
IKQ +LLKRS N L +WK+++ L+S G L Y+
Sbjct: 5 IKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYH 38
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 689 DPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAI 748
DP +G +LLH+A G++ +E L+Q G+D P++KD G + L A G +
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSD------PNVKDHAGWTPLHEACNHGHL 56
Query: 749 TDEELFI 755
EL +
Sbjct: 57 KVVELLL 63
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
++G IK G+L K+ S ++ +W++R+FVL +Q LYYY+++
Sbjct: 2 SSGSSGPIKMGWLKKQRSIVK-NWQQRYFVLRAQ-QLYYYKDE 42
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 291 EVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
EV IK+G+L KR ++ W+ R+F+L S G+ Y+ +
Sbjct: 3 EVSVIKEGWLHKRGEYIK-TWRPRYFLLKSDGSFIGYKER 41
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L+++GAD+N KD G++ L A G + E+ +
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNA------KDATGITPLYLAAYWGHLEIVEVLL 121
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LH+A G+L ++E+L++ GAD+N D G + L A +G + E+ +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNA------VDTNGTTPLHLAASLGHLEIVEVLL 88
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L+++GAD+N +D GL+ L A + G + E+ +
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGADVNA------QDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELF 754
QG + LHLA G+ ++E+L++ GAD+N R D G + L A + G + E+
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGADVNAR------DTDGWTPLHLAADNGHLEIVEVL 99
Query: 755 I 755
+
Sbjct: 100 L 100
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 286 SSATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGS 337
S ++G K G+L K++S+ W +R+FVL + YY K +GS
Sbjct: 3 SGSSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGS 54
>pdb|1ZWW|A Chain A, Crystal Structure Of Endophilin-A1 Bar Domain
pdb|1ZWW|B Chain B, Crystal Structure Of Endophilin-A1 Bar Domain
Length = 256
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 25/169 (14%)
Query: 50 SGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLT 109
++ A+A+ FG D + GP + + A REL+ K+ L +V+ I+ L
Sbjct: 88 QAEALLAEAMLKFGRELGDDCNF---GPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQ 144
Query: 110 EFLTVDL-----HDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKS 164
DL H K RR D Y + R+ + D+ + + E SK
Sbjct: 145 NLHDKDLREIQHHLKKLEGRRLD---FGYKKKRQGKIP------DEELRQALEKFDESKE 195
Query: 165 AFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKI 213
E S FNL+ +IE + +SA++ L Y K +L ++
Sbjct: 196 IAESSMFNLLE--MDIEQ------VSQLSALVQAQLEYHKQAVQILQQV 236
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHH 340
++G +K G+LL++S+ L+ WK+ +F L S G L YY ++ +S+ H
Sbjct: 2 SSGSSGFVKSGWLLRQSTILK-RWKKNWFDLWSDGHLIYYDDQTRQSIEDKVH 53
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
QG + LHLA + G+L ++E+L+++GAD+N + +
Sbjct: 112 QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L+++GAD+N D G + L A E G + E+ +
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNA------MDYQGYTPLHLAAEDGHLEIVEVLL 133
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L++ GAD+N KD G++ L A G + E+ +
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNA------KDDNGITPLHLAANRGHLEIVEVLL 133
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 113 GITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA Q G+L ++E+L+++GAD+N +D G++ L A G + E+ +
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNA------EDNFGITPLHLAAIRGHLEIVEVLL 100
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 696 GGSL----LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
GG L LH A + G+L M+ L+++GAD PS+ DG G S + A + G
Sbjct: 72 GGDLNSTPLHWATRQGHLSMVVQLMKYGAD------PSLIDGEGCSCIHLAAQFG 120
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA + G+L ++E+L+++GAD+N
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
+G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 112 EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMR 725
G + LHLA G+L ++E+L++ GAD+N +
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAK 109
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 684 IKDSNDPGNCLQGG-SLLHLACQCGNLVMLELLIQFGADIN 723
+ D L+GG LH A CG L +LE L+ GADIN
Sbjct: 22 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 694 LQGGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA + G+L ++E+L+++GAD+N
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVN 107
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA + G+L ++E+L++ GAD+N
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVN 74
>pdb|1U5K|A Chain A, Recombinational Repair Protein Reco
pdb|1U5K|B Chain B, Recombinational Repair Protein Reco
pdb|1W3S|A Chain A, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|1W3S|B Chain B, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|2V1C|C Chain C, Crystal Structure And Mutational Study Of Recor Provide
Insight Into Its Role In Dna Repair
Length = 244
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 483 IPGNDLCAECSAPDPDWASLNLGILLCIECSGV 515
IP CA C APDP+ G LLC +C+ +
Sbjct: 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAAL 179
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From Human
Length = 112
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 290 GEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
G + +K G+LL++S+ L+ WK+ +F L S G L YY ++
Sbjct: 1 GSMAFVKSGWLLRQSTILK-RWKKNWFDLWSDGHLIYYDDQ 40
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
+ G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 111 MTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA G+L ++E+L+++GAD+N
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVN 107
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 669 KVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
+VKK + G R KD N P LHLA + G+ +++LL+ GAD+N R++
Sbjct: 24 EVKKLLSKGADVNARSKDGNTP---------LHLAAKNGHAEIVKLLLAKGADVNARSK 73
>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|B Chain B, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|C Chain C, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|D Chain D, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|E Chain E, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|F Chain F, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|G Chain G, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|H Chain H, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
Length = 119
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+ +V +K+G++ KR ++ +W+ R+F+L + G+ Y+ K
Sbjct: 1 SMSDVTIVKEGWVQKRGEYIK-NWRPRYFLLKTDGSFIGYKEK 42
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMR 725
G + LHLA + G+L ++E+L++ GAD+N R
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYY 326
++G +KQGY++K+ + R +W R+FVL YY
Sbjct: 2 SSGSSGVLKQGYMMKK-GHRRKNWTERWFVLKPNIISYY 39
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 286 SSATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+ +V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 1 GAMASDVAIVKEGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKER 44
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 513 SGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGS-LGNAYCNSIWEGLLLLKDREVDKSN 571
SGVH+ + + + K S++LD + +L+ S + NA W+G + R+ +KS
Sbjct: 40 SGVHKKMNISLWKAESISLDFGDHQADLLNCKDSIISNANVKEFWDGFEEVSKRQKNKSG 99
Query: 572 TTI 574
T+
Sbjct: 100 ETV 102
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 291 EVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 3 DVAIVKEGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKER 41
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 29.6 bits (65), Expect = 6.8, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA + G+L ++E+L++ GAD+N
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN 74
>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Pkb
Alpha
Length = 121
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 291 EVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 3 DVAIVKEGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKER 41
>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel
Inositol Headgroup Surrogate, Benzene 1,2,3,4-
Tetrakisphosphate
Length = 123
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 291 EVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 3 DVAIVKEGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKER 41
>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 125
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+ +V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 2 SMSDVAIVKEGWLHKRGKYIK-TWRPRYFLLKNDGTFIGYKER 43
>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology
Domain Of Protein Kinase BAKT BOUND TO
Ins(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+ +V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 2 SXSDVAIVKEGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKER 43
>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In Complex
With A Sulfate Molecule
pdb|1UNQ|A Chain A, High Resolution Crystal Structure Of The Pleckstrin
Homology Domain Of Protein Kinase BAKT BOUND TO INS
(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+ +V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 2 SMSDVAIVKEGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKER 43
>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 124
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+ +V +K+G+L KR ++ W+ R+F+L + GT Y+ +
Sbjct: 1 SMSDVAIVKEGWLHKRGKYIK-TWRPRYFLLKNDGTFIGYKER 42
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 684 IKDSNDPGNCLQGG-SLLHLACQCGNLVMLELLIQFGADIN 723
+ D L+GG LH A CG L +LE L+ GADIN
Sbjct: 27 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N D G + L A +G + E+ +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNA------SDSWGRTPLHLAATVGHLEIVEVLL 100
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
LHLA + +++LL+Q GAD++ KD GGL L A G EL +
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVH------AKDKGGLVPLHNACSYGHYEVTELLL 111
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 688 NDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
ND + GG+ LH+A G +L+LLIQ D+N IKD G + L A G
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN------IKDYDGWTPLHAAAHWG 243
>pdb|1X03|A Chain A, Crystal Structure Of Endophilin Bar Domain
Length = 252
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 76 GPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQ 135
GP + + A REL+ K+ L +V+ I+ L DL + + ++ + +D
Sbjct: 116 GPALGEVGEAXRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDY 175
Query: 136 AREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAI 195
+++ + D+ + + E SK E S FNL+ +IE + +SA+
Sbjct: 176 KKKR----QGKIPDEELRQALEKFDESKEIAESSXFNLLE--XDIEQ------VSQLSAL 223
Query: 196 MDVHLRYFKLGFDLLSKI 213
+ L Y K +L ++
Sbjct: 224 VQAQLEYHKQAVQILQQV 241
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 691 GNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
N ++G + LHLA G+L ++E+L++ GAD+N + +
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L+++GAD+N + +
Sbjct: 113 GFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L++ GAD+N D G + L A + G + E+ +
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNA------TDTYGFTPLHLAADAGHLEIVEVLL 133
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 375 VDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKIT 422
++L T +K + ED + F +IS +TY QAE E D + W S +T
Sbjct: 53 LNLLTCQVKPNAED---KKSFDLISHNRTYHFQAEDEQDYVAWISVLT 97
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 298 GYLLKRSSNLRGDWKRRFFVLNSQ-GTLYYYRNK 330
GYL+K + NL W+ RFFVLN++ G L Y+ N+
Sbjct: 12 GYLMKYT-NLVTGWQYRFFVLNNEAGLLEYFVNE 44
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
+++G+L K+ S WK+R+FVL S L+YYR++
Sbjct: 21 VVRRGWLYKQDSTGMKLWKKRWFVL-SDLCLFYYRDE 56
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L++ GAD+N KD G++ L A G + E+ +
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNA------KDSLGVTPLHLAARRGHLEIVEVLL 100
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N D G + L A + G + E+ +
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNA------SDSHGFTPLHLAAKRGHLEIVEVLL 133
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA + G+L ++E+L++ GAD+N + +
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L +++LL++ GAD+N KD G + L A G + E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHL---EVVK 52
Query: 756 LLAES 760
LL E+
Sbjct: 53 LLLEA 57
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L +++LL++ GAD+N KD G + L A G + E+
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHL---EVVK 85
Query: 756 LLAES 760
LL E+
Sbjct: 86 LLLEA 90
>pdb|2D4C|A Chain A, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|B Chain B, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|C Chain C, Crystal Structure Of The Endophilin Bar Domain Mutant
pdb|2D4C|D Chain D, Crystal Structure Of The Endophilin Bar Domain Mutant
Length = 256
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 51 GDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTE 110
++ A+A+ FG D + GP + + A REL+ K+ L +V+ I+ L
Sbjct: 94 AEALLAEAMLKFGRELGDDCNF---GPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQN 150
Query: 111 FLTVDLHDAKESRRRFDKSIHA------YDQAREKFVSLKKNTRDDIVAELEEDLQNSKS 164
DL + + + + K + Y + R+ + D+ + + E SK
Sbjct: 151 LHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIP------DEELRQALEKFDESKE 204
Query: 165 AFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKI 213
E S FNL+ +IE + +SA++ L Y K +L ++
Sbjct: 205 IAESSMFNLLE--MDIEQ------VSQLSALVQAQLEYHKQAVQILQQV 245
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L +++LL++ GAD+N KD G + L A G + E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHL---EVVK 52
Query: 756 LLAES 760
LL E+
Sbjct: 53 LLLEA 57
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L +++LL++ GAD+N KD G + L A G + E+
Sbjct: 35 GRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHL---EVVK 85
Query: 756 LLAES 760
LL E+
Sbjct: 86 LLLEA 90
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L +++LL++ GAD+N KD G + L A G + E+
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHL---EVVK 118
Query: 756 LLAES 760
LL E+
Sbjct: 119 LLLEA 123
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
G + LHLA G L ++E+L++ GAD+N +D GL++ + ++ G
Sbjct: 105 GWTPLHLAALSGQLEIVEVLLKHGADVNA------QDALGLTAFDISINQG 149
>pdb|2C08|A Chain A, Rat Endophilin A1 Bar Domain
Length = 204
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 76 GPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQ 135
GP + + A REL+ K+ L +V+ I+ L DL + + ++ + +D
Sbjct: 68 GPALGEVGEAXRELSEVKDSLDXEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDY 127
Query: 136 AREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAI 195
+++ + D+ + + E SK E S FNL+ +IE + +SA+
Sbjct: 128 KKKR----QGKIPDEELRQALEKFDESKEIAESSXFNLLE--XDIEQ------VSQLSAL 175
Query: 196 MDVHLRYFKLGFDLLSKI 213
+ L Y K +L ++
Sbjct: 176 VQAQLEYHKQAVQILQQV 193
>pdb|1X04|A Chain A, Crystal Structure Of Endophilin Bar Domain (Mutant)
Length = 230
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 76 GPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQ 135
GP + + A REL+ K+ L +V+ I+ L DL + + ++ + +D
Sbjct: 94 GPALGEVGEAXRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDY 153
Query: 136 AREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAI 195
+++ + D+ + + E SK E S FNL+ +IE + +SA+
Sbjct: 154 KKKR----QGKIPDEELRQALEKFDESKEIAESSXFNLLE--XDIEQ------VSQLSAL 201
Query: 196 MDVHLRYFKLGFDLLSKI 213
+ L Y K +L ++
Sbjct: 202 VQAQLEYHKQAVQILQQV 219
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 694 LQGGSLLHLACQCGNLVMLELLIQFGADIN 723
+ G + LHLA G+L ++E+L++ GAD+N
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L++ GAD+N + +
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA G+L ++E+L++ GAD+N
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVN 74
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 297 QGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGS 337
+G+L K+ S+ WKRR+FVL+ YY ++ +GS
Sbjct: 14 RGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGS 54
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGS 337
K G+L K++S+ W +R+FVL + YY K +GS
Sbjct: 24 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGS 65
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 41/137 (29%)
Query: 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVXX 353
IK GY +K+ + ++ +WKRR+F L+ + T+ Y++++ K
Sbjct: 14 VIKAGYCVKQGAVMK-NWKRRYFQLD-ENTIGYFKSELEKE------------------- 52
Query: 354 XXXXXXXXXXXXNEDSLNCRTVDLRTSAIKMDGEDTDLRL---CFRIISPVKTYTLQAET 410
R + L+ + + +D+ + F I++ +T+ +QA++
Sbjct: 53 -----------------PLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADS 95
Query: 411 EADRMDWTSKITGVIAS 427
+ W ++G I +
Sbjct: 96 PEEMHSWIKAVSGAIVA 112
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 694 LQGGSLLHLACQCGNLVMLELLIQFGADIN 723
+ G + LHLA G+L ++E+L++ GAD+N
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L++ GAD+N + +
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA G+L ++E+L++ GAD+N
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVN 74
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYY 327
++G+LLK WKRR+F+L + LYY+
Sbjct: 13 REGWLLKLGGGRVKTWKRRWFIL-TDNCLYYF 43
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 694 LQGGSLLHLACQCGNLVMLELLIQFGADIN 723
L G + LHLA G+L ++E+L++ GAD+N
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA + G+L ++E+L++ GAD+N + +
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family B Member 1 From Mouse
Length = 130
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNK 330
++G ++ G+L ++SS L WKR +F L GTL YY ++
Sbjct: 2 SSGSSGLVRGGWLWRQSSIL-RRWKRNWFALWLDGTLGYYHDE 43
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+ +++LL+ GAD P+ D G + L+ A E G +EE+
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGAD------PNTSDSDGRTPLDLAREHG---NEEVVK 153
Query: 756 LL 757
LL
Sbjct: 154 LL 155
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
G + LHLA + G+ +++LL+ GAD P+ KD G + L A E G
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGAD------PNAKDSDGKTPLHLAAENG 81
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
G + LHLA + G+ +++LL+ GAD P+ KD G + L A E G
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGAD------PNAKDSDGKTPLHLAAENG 114
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
G + LH+A GN+ +++ L+Q AD+N + + G S L +A + G
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTK------LGYSPLHQAAQQG 355
>pdb|2KSD|A Chain A, Backbone Structure Of The Membrane Domain Of E. Coli
Histidine Kinase Receptor Arcb, Center For Structures Of
Membrane Proteins (Csmp) Target 4310c
Length = 115
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 111 FLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDI 151
FL+V + +ESR+R + + ++ RE+ +SL +D+I
Sbjct: 72 FLSVVVEQLEESRQRLSRLVQKLEEMRERDLSLNVQLKDNI 112
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N KD G + L A G + E+ +
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKDGYTPLHLAAREGHLEIVEVLL 88
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N KD G + L A G + E+ +
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKDGYTPLHLAAREGHLEIVEVLL 121
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
G + LH A + G+ +++LLI GAD+N KD G + L A E G
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNA------KDSDGRTPLHHAAENG 81
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
G + LH A + G+ +++LLI GAD+N KD G + L A E G
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNA------KDSDGRTPLHHAAENG 114
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 27/152 (17%)
Query: 606 DTSDAKSRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEI 665
+ SD+ RT + A + + +EV +L+++ A++ D G HH + E+
Sbjct: 31 NASDSDGRTP-LHHAAENGH-KEVVKLLISKGADV---NAKDSDGRTPLHHAAENGHKEV 85
Query: 666 DFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMR 725
+ K KDS+ G + LH A + G+ +++LLI GAD+N
Sbjct: 86 VKLLISK------GADVNAKDSD-------GRTPLHHAAENGHKEVVKLLISKGADVNT- 131
Query: 726 ARPSIKDGGGLSSLERAMEMGAITDEELFILL 757
D G + L+ A E G +EE+ LL
Sbjct: 132 -----SDSDGRTPLDLAREHG---NEEVVKLL 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N KD G + L A G + E+ +
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKDGYTPLHLAAREGHLEIVEVLL 88
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N KD G + L A G + E+ +
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKDGYTPLHLAAREGHLEIVEVLL 121
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 685 KDSNDP-----GNC----LQGGSLLHLACQCGNLVMLELLIQFGADINMRA 726
KDS +P C QG S LH+A + +L ++LL++ GAD+++RA
Sbjct: 83 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 133
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 32/128 (25%)
Query: 295 IKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVXXX 354
IKQG LLK+ R +WK R F+L +Y + AG+ D G +
Sbjct: 23 IKQGCLLKQGHR-RKNWKVRKFILREDPAYLHYYDP-----------AGAEDPLGAIHLR 70
Query: 355 XXXXXXXXXXXNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKT-YTLQAETEAD 413
C + +++ E+ +L F II+ + Y LQA T +
Sbjct: 71 ----------------GCVVTSVESNSNGRKSEEENL---FEIITADEVHYFLQAATPKE 111
Query: 414 RMDWTSKI 421
R +W I
Sbjct: 112 RTEWIKAI 119
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N KD G + L A G + E+ +
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKDGYTPLHLAAREGHLEIVEVLL 100
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA + G+L ++E+L++ GAD+N KD G + L A G + E+ +
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKDGYTPLHLAAREGHLEIVEVLL 133
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYY 327
++G+LLK WKRR+F+L + LYY+
Sbjct: 17 REGWLLKLGGGRVKTWKRRWFIL-TDNCLYYF 47
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L++ GAD+N D G++ L A + G + E+ +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNA------MDSDGMTPLHLAAKWGYLEIVEVLL 133
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA + G L ++E+L++ GAD+N + +
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMR 725
G + LHLA G L ++ELL+ GAD+N +
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L++ GAD+N + +
Sbjct: 113 GFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LHLA G+L ++E+L++ GAD+N D G++ L A + G + E+ +
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNA------DDSLGVTPLHLAADRGHLEVVEVLL 100
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 9/51 (17%)
Query: 685 KDSNDP-----GNC----LQGGSLLHLACQCGNLVMLELLIQFGADINMRA 726
KDS +P C QG S LH+A + +L ++LL++ GAD+++RA
Sbjct: 70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 32/128 (25%)
Query: 295 IKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVXXX 354
IKQG LLK+ + R +WK R F+L +Y + AG+ D G +
Sbjct: 8 IKQGCLLKQ-GHRRKNWKVRKFILREDPAYLHYYDP-----------AGAEDPLGAIHLR 55
Query: 355 XXXXXXXXXXXNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKT-YTLQAETEAD 413
C + +++ E+ +L F II+ + Y LQA T +
Sbjct: 56 ----------------GCVVTSVESNSNGRKSEEENL---FEIITADEVHYFLQAATPKE 96
Query: 414 RMDWTSKI 421
R +W I
Sbjct: 97 RTEWIKAI 104
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
G + LH A + G+ +++LLI GAD+N D G + L+ A E G +EE+
Sbjct: 103 GRTPLHYAAKEGHKEIVKLLISKGADVNT------SDSDGRTPLDLAREHG---NEEIVK 153
Query: 756 LL 757
LL
Sbjct: 154 LL 155
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMR 725
G + LHLA G L ++ELL+ GAD+N +
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA + G+L +++LL++ GAD+N + +
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 104 LINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSK 163
+ + +T L V + D E+++R I+ R + S + + +I + E ++Q +
Sbjct: 12 MASHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFS--ERCKGEIFLKFE-NMQRTG 68
Query: 164 SAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFD 208
S + FN +S+LT E +K + + V L LG D
Sbjct: 69 SFXIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGID 113
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADIN 723
G + LHLA G+L ++E+L++ GAD+N
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 686 DSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
D N GN G + LHLA +L ++E+L++ GAD+N + +
Sbjct: 72 DVNATGN--TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
LH A + ++E L+Q GAD++ KD GGL L A G EL +
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHA------KDKGGLVPLHNACSYGHYEVAELLV 97
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
LH A + ++E L+Q GAD++ KD GGL L A G EL +
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHA------KDKGGLVPLHNACSYGHYEVAELLV 95
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
LH AC G+ ++E L+Q G +N KD G S L A G
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAG 84
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
LH AC G+ ++E L+Q G +N KD G S L A G
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAG 84
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755
LH A + ++E L+Q GAD++ KD GGL L A G EL +
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHA------KDKGGLVPLHNACSYGHYEVAELLV 99
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRAR 727
G + LHLA G+L ++E+L++ GAD+N + +
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
G + LH A + G+ +++LL+ GAD P+ KD G + L A E G
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGAD------PNAKDSDGRTPLHYAAENG 81
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
LH AC G+ ++E L+Q G +N KD G S L A G
Sbjct: 45 LHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAG 85
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 700 LHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMG 746
LH AC G+ ++E L+Q G +N KD G S L A G
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAG 84
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|B Chain B, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|C Chain C, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|D Chain D, Crystal Structure Of Human Pank3 In Complex With Accoa
Length = 362
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 34 LYKGCKKFTEALGVACSGDSAFADAL--EAFGGGHD 67
L GC+ F EAL +A GDS AD L + +GG ++
Sbjct: 218 LLTGCESFEEALEMASKGDSTQADKLVRDIYGGDYE 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,606,240
Number of Sequences: 62578
Number of extensions: 891505
Number of successful extensions: 2541
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 2355
Number of HSP's gapped (non-prelim): 223
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)