Query 046849
Match_columns 760
No_of_seqs 608 out of 4079
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:05:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0521 Putative GTPase activa 100.0 2.4E-85 5.2E-90 750.5 37.6 656 3-747 9-701 (785)
2 KOG0705 GTPase-activating prot 100.0 2.2E-57 4.7E-62 474.9 23.7 377 279-758 287-714 (749)
3 KOG1451 Oligophrenin-1 and rel 100.0 2.2E-49 4.7E-54 414.9 33.8 344 5-424 10-366 (812)
4 cd07606 BAR_SFC_plant The Bin/ 100.0 1.8E-40 3.9E-45 322.9 25.4 201 16-216 2-202 (202)
5 cd07602 BAR_RhoGAP_OPHN1-like 100.0 3.9E-40 8.5E-45 318.4 24.7 201 14-217 1-207 (207)
6 cd07601 BAR_APPL The Bin/Amphi 100.0 2E-39 4.4E-44 316.5 26.7 208 14-225 1-215 (215)
7 cd07603 BAR_ACAPs The Bin/Amph 100.0 1.2E-39 2.6E-44 318.5 25.0 200 14-217 1-200 (200)
8 cd07633 BAR_OPHN1 The Bin/Amph 100.0 1.9E-39 4.1E-44 306.7 23.9 201 14-217 1-207 (207)
9 cd07636 BAR_GRAF The Bin/Amphi 100.0 3.4E-39 7.3E-44 310.8 24.7 201 14-217 1-207 (207)
10 cd07634 BAR_GAP10-like The Bin 100.0 5.5E-39 1.2E-43 308.7 23.7 201 14-217 1-207 (207)
11 cd07639 BAR_ACAP1 The Bin/Amph 100.0 3.5E-38 7.6E-43 303.8 24.7 199 14-217 1-200 (200)
12 cd07638 BAR_ACAP2 The Bin/Amph 100.0 4.5E-38 9.7E-43 303.6 25.1 199 14-217 1-200 (200)
13 cd07637 BAR_ACAP3 The Bin/Amph 100.0 9.2E-38 2E-42 303.9 24.6 199 14-217 1-200 (200)
14 cd07635 BAR_GRAF2 The Bin/Amph 100.0 1.5E-37 3.1E-42 299.5 25.3 202 14-217 1-207 (207)
15 cd07631 BAR_APPL1 The Bin/Amph 100.0 7.5E-36 1.6E-40 284.6 26.1 208 14-225 1-215 (215)
16 cd07632 BAR_APPL2 The Bin/Amph 100.0 3E-34 6.6E-39 270.5 25.1 206 14-223 1-213 (215)
17 KOG0818 GTPase-activating prot 100.0 3.3E-36 7.1E-41 310.8 12.2 210 483-759 5-221 (669)
18 KOG0703 Predicted GTPase-activ 100.0 1.3E-36 2.9E-41 302.2 8.8 118 471-606 10-127 (287)
19 cd07641 BAR_ASAP1 The Bin/Amph 100.0 3E-34 6.5E-39 271.8 24.3 204 14-220 1-215 (215)
20 cd07604 BAR_ASAPs The Bin/Amph 100.0 6.2E-33 1.3E-37 273.2 25.4 206 14-220 1-215 (215)
21 PF01412 ArfGap: Putative GTPa 100.0 7.8E-34 1.7E-38 254.8 9.3 114 475-604 2-115 (116)
22 cd07642 BAR_ASAP2 The Bin/Amph 100.0 1.5E-31 3.2E-36 255.8 25.0 203 14-220 1-215 (215)
23 cd07640 BAR_ASAP3 The Bin/Amph 100.0 1.4E-31 3E-36 249.0 22.4 206 14-220 1-213 (213)
24 smart00105 ArfGap Putative GTP 100.0 7.8E-33 1.7E-37 246.4 10.8 110 484-608 1-110 (112)
25 cd07609 BAR_SIP3_fungi The Bin 100.0 2.9E-29 6.4E-34 246.2 21.3 210 15-226 1-213 (214)
26 KOG1117 Rho- and Arf-GTPase ac 100.0 9.2E-31 2E-35 285.2 10.6 272 289-662 187-460 (1186)
27 COG5347 GTPase-activating prot 100.0 2.8E-30 6E-35 266.3 10.7 119 473-605 7-125 (319)
28 PLN03119 putative ADP-ribosyla 100.0 2E-28 4.3E-33 259.3 10.9 123 470-610 7-129 (648)
29 PLN03131 hypothetical protein; 99.9 5.3E-28 1.2E-32 258.1 10.9 121 471-609 8-128 (705)
30 PLN03114 ADP-ribosylation fact 99.9 2.9E-25 6.3E-30 223.8 12.0 120 474-606 10-129 (395)
31 KOG0704 ADP-ribosylation facto 99.9 3.9E-25 8.4E-30 221.0 7.9 85 473-559 6-90 (386)
32 KOG0706 Predicted GTPase-activ 99.9 4.4E-25 9.6E-30 228.6 7.3 87 473-561 10-96 (454)
33 cd07307 BAR The Bin/Amphiphysi 99.8 1.4E-17 3.1E-22 165.2 24.7 191 24-215 2-193 (194)
34 KOG4412 26S proteasome regulat 99.8 7.1E-20 1.5E-24 167.9 4.7 110 616-747 41-151 (226)
35 cd01233 Unc104 Unc-104 pleckst 99.8 8.1E-19 1.8E-23 153.9 11.1 95 294-426 2-99 (100)
36 cd01251 PH_centaurin_alpha Cen 99.8 1E-18 2.2E-23 153.8 11.1 93 296-426 1-101 (103)
37 cd01264 PH_melted Melted pleck 99.8 2.1E-18 4.6E-23 148.4 10.5 93 296-424 2-100 (101)
38 KOG4412 26S proteasome regulat 99.7 3.8E-18 8.2E-23 156.6 7.6 122 613-759 72-193 (226)
39 cd01236 PH_outspread Outspread 99.7 9.5E-18 2.1E-22 145.9 9.7 92 296-422 1-101 (104)
40 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 1.7E-17 3.7E-22 143.9 10.7 90 297-424 2-93 (95)
41 cd01238 PH_Tec Tec pleckstrin 99.7 1.5E-17 3.1E-22 147.3 9.7 94 295-423 1-105 (106)
42 cd01247 PH_GPBP Goodpasture an 99.7 4.6E-17 1E-21 139.5 11.1 88 297-423 2-90 (91)
43 cd01260 PH_CNK Connector enhan 99.7 3.9E-17 8.4E-22 142.7 10.5 91 296-424 2-96 (96)
44 KOG0509 Ankyrin repeat and DHH 99.7 1.2E-17 2.7E-22 181.4 7.4 122 612-758 77-198 (600)
45 cd01257 PH_IRS Insulin recepto 99.7 7.6E-17 1.7E-21 139.8 10.5 94 294-423 2-100 (101)
46 cd01250 PH_centaurin Centaurin 99.7 2E-16 4.3E-21 137.7 10.2 93 296-423 1-93 (94)
47 cd01252 PH_cytohesin Cytohesin 99.7 5.9E-16 1.3E-20 141.9 11.9 93 295-426 1-114 (125)
48 KOG0512 Fetal globin-inducing 99.7 6E-17 1.3E-21 147.6 5.2 118 617-758 67-184 (228)
49 cd01235 PH_SETbf Set binding f 99.7 6.3E-16 1.4E-20 136.5 10.8 92 297-425 2-101 (101)
50 cd01245 PH_RasGAP_CG5898 RAS G 99.6 6E-16 1.3E-20 132.8 8.3 91 296-423 1-97 (98)
51 smart00721 BAR BAR domain. 99.6 9.3E-14 2E-18 143.1 25.0 200 17-218 29-238 (239)
52 cd01266 PH_Gab Gab (Grb2-assoc 99.6 1.9E-15 4.2E-20 134.6 10.7 91 297-423 2-106 (108)
53 KOG0509 Ankyrin repeat and DHH 99.6 4.7E-16 1E-20 169.2 7.4 141 593-759 87-233 (600)
54 PHA02743 Viral ankyrin protein 99.6 5.6E-16 1.2E-20 149.9 7.0 122 616-759 23-149 (166)
55 PHA02741 hypothetical protein; 99.6 9.5E-16 2.1E-20 148.9 7.1 124 615-759 23-153 (169)
56 cd01249 PH_oligophrenin Oligop 99.6 1.9E-15 4.2E-20 128.8 7.8 97 296-423 1-103 (104)
57 cd01246 PH_oxysterol_bp Oxyste 99.6 5.5E-15 1.2E-19 127.8 10.3 90 296-424 1-91 (91)
58 cd01244 PH_RasGAP_CG9209 RAS_G 99.6 5E-15 1.1E-19 127.8 9.5 88 298-423 5-97 (98)
59 PHA02791 ankyrin-like protein; 99.6 2.7E-15 5.8E-20 156.7 9.5 91 615-724 32-122 (284)
60 cd07608 BAR_ArfGAP_fungi The B 99.6 2.4E-13 5.2E-18 129.4 21.2 177 15-204 1-179 (192)
61 PHA02736 Viral ankyrin protein 99.6 4.8E-15 1E-19 141.7 8.8 125 614-759 18-147 (154)
62 PHA02884 ankyrin repeat protei 99.6 3.8E-15 8.3E-20 155.4 8.6 111 617-747 37-149 (300)
63 PF03114 BAR: BAR domain; Int 99.6 1.6E-12 3.5E-17 132.7 27.1 195 16-218 27-229 (229)
64 cd01241 PH_Akt Akt pleckstrin 99.6 2.1E-14 4.6E-19 126.2 10.9 94 294-424 1-101 (102)
65 PHA02878 ankyrin repeat protei 99.6 6.3E-15 1.4E-19 167.6 8.6 136 614-758 38-255 (477)
66 PHA02791 ankyrin-like protein; 99.5 3.4E-14 7.4E-19 148.4 13.2 128 616-759 64-215 (284)
67 KOG0508 Ankyrin repeat protein 99.5 3.2E-15 6.9E-20 155.9 3.8 116 617-759 121-236 (615)
68 PHA02875 ankyrin repeat protei 99.5 1.3E-14 2.9E-19 162.1 8.4 121 613-759 102-223 (413)
69 PHA02859 ankyrin repeat protei 99.5 2.4E-14 5.2E-19 143.9 8.9 123 614-759 52-180 (209)
70 KOG0508 Ankyrin repeat protein 99.5 1.2E-14 2.7E-19 151.5 6.8 119 615-759 86-204 (615)
71 PF00169 PH: PH domain; Inter 99.5 1.5E-13 3.2E-18 121.4 12.5 97 294-425 1-103 (104)
72 PLN03192 Voltage-dependent pot 99.5 1.9E-14 4E-19 173.5 8.9 117 617-759 529-676 (823)
73 PHA02874 ankyrin repeat protei 99.5 2.6E-14 5.5E-19 160.7 9.1 126 614-759 125-276 (434)
74 PHA02859 ankyrin repeat protei 99.5 2.5E-14 5.4E-19 143.8 7.8 118 616-759 24-146 (209)
75 PHA02795 ankyrin-like protein; 99.5 2.4E-14 5.3E-19 155.2 8.0 123 617-759 153-283 (437)
76 KOG0930 Guanine nucleotide exc 99.5 5.7E-14 1.2E-18 136.9 9.5 96 293-426 259-376 (395)
77 PHA02874 ankyrin repeat protei 99.5 4.6E-14 1E-18 158.6 10.0 135 615-758 37-210 (434)
78 PF15409 PH_8: Pleckstrin homo 99.5 1.4E-13 3.1E-18 114.8 9.0 87 298-424 1-88 (89)
79 PHA02946 ankyin-like protein; 99.5 6.1E-14 1.3E-18 157.0 8.9 131 615-758 74-230 (446)
80 cd01219 PH_FGD FGD (faciogenit 99.5 3.1E-13 6.8E-18 118.6 11.5 99 294-426 2-100 (101)
81 PHA02875 ankyrin repeat protei 99.5 6E-14 1.3E-18 156.8 8.7 117 617-758 72-188 (413)
82 PHA02878 ankyrin repeat protei 99.5 5.1E-14 1.1E-18 160.2 8.1 113 617-746 172-311 (477)
83 KOG0195 Integrin-linked kinase 99.5 6.4E-15 1.4E-19 144.4 0.3 109 613-744 34-142 (448)
84 PHA03095 ankyrin-like protein; 99.5 6.7E-14 1.4E-18 159.2 8.4 120 616-759 190-311 (471)
85 PHA03100 ankyrin repeat protei 99.5 6.5E-14 1.4E-18 159.7 8.2 121 615-759 178-304 (480)
86 KOG0514 Ankyrin repeat protein 99.5 4.1E-14 8.8E-19 143.5 5.1 129 615-757 270-426 (452)
87 KOG4177 Ankyrin [Cell wall/mem 99.5 5.8E-14 1.3E-18 165.2 7.2 121 612-758 506-626 (1143)
88 PF15413 PH_11: Pleckstrin hom 99.5 4.3E-13 9.3E-18 119.8 10.6 106 296-424 1-112 (112)
89 PHA02798 ankyrin-like protein; 99.4 1E-13 2.3E-18 158.0 8.1 131 613-759 109-279 (489)
90 cd07594 BAR_Endophilin_B The B 99.4 2.4E-11 5.2E-16 121.0 23.7 193 16-215 18-227 (229)
91 PF13857 Ank_5: Ankyrin repeat 99.4 8.1E-14 1.7E-18 108.2 4.7 55 680-742 1-56 (56)
92 PHA02946 ankyin-like protein; 99.4 1.7E-13 3.6E-18 153.5 8.5 125 617-759 41-196 (446)
93 PHA02876 ankyrin repeat protei 99.4 1.7E-13 3.7E-18 162.8 8.8 124 617-759 311-464 (682)
94 PHA02989 ankyrin repeat protei 99.4 2.2E-13 4.8E-18 155.5 8.3 128 615-759 110-277 (494)
95 PHA02989 ankyrin repeat protei 99.4 8.1E-13 1.8E-17 150.9 11.3 68 681-759 243-310 (494)
96 cd07593 BAR_MUG137_fungi The B 99.4 1.6E-10 3.4E-15 114.3 25.7 189 16-214 8-205 (215)
97 PHA02716 CPXV016; CPX019; EVM0 99.4 3.7E-13 8E-18 155.8 7.9 31 707-743 295-325 (764)
98 PHA03100 ankyrin repeat protei 99.4 4.3E-13 9.4E-18 153.0 8.3 118 616-759 71-197 (480)
99 cd01220 PH_CDEP Chondrocyte-de 99.4 3.2E-12 6.9E-17 111.0 11.4 97 294-426 2-98 (99)
100 PHA03095 ankyrin-like protein; 99.4 3.9E-13 8.5E-18 152.9 7.1 122 615-759 49-175 (471)
101 cd01230 PH_EFA6 EFA6 Pleckstri 99.4 3.2E-12 6.9E-17 113.9 11.4 101 296-426 2-112 (117)
102 PHA02917 ankyrin-like protein; 99.4 4.3E-13 9.3E-18 156.1 7.4 121 617-759 107-252 (661)
103 KOG4214 Myotrophin and similar 99.4 2.5E-13 5.4E-18 111.1 3.3 101 617-741 6-106 (117)
104 cd07615 BAR_Endophilin_A3 The 99.4 2.7E-10 5.8E-15 112.5 25.2 189 16-219 8-218 (223)
105 cd07592 BAR_Endophilin_A The B 99.4 2.9E-10 6.3E-15 113.2 25.4 188 16-218 8-217 (223)
106 KOG4177 Ankyrin [Cell wall/mem 99.4 1.1E-12 2.4E-17 154.6 9.3 129 617-759 444-594 (1143)
107 PHA02716 CPXV016; CPX019; EVM0 99.4 8.5E-13 1.8E-17 152.8 8.2 119 617-759 288-424 (764)
108 PHA02876 ankyrin repeat protei 99.4 1.1E-12 2.3E-17 156.1 9.0 123 613-759 273-396 (682)
109 PHA02798 ankyrin-like protein; 99.4 9E-13 1.9E-17 150.4 7.4 123 617-759 75-207 (489)
110 cd07614 BAR_Endophilin_A2 The 99.3 3.1E-10 6.7E-15 112.2 24.0 188 16-218 8-217 (223)
111 cd01254 PH_PLD Phospholipase D 99.3 3.2E-12 6.9E-17 115.9 9.2 103 296-424 1-121 (121)
112 KOG0195 Integrin-linked kinase 99.3 4E-13 8.7E-18 131.9 3.5 111 617-749 4-114 (448)
113 PF12796 Ank_2: Ankyrin repeat 99.3 4.3E-13 9.4E-18 115.3 3.3 87 617-724 1-87 (89)
114 KOG0510 Ankyrin repeat protein 99.3 9.7E-13 2.1E-17 146.1 6.7 122 614-758 274-397 (929)
115 PHA02741 hypothetical protein; 99.3 1.3E-12 2.8E-17 126.9 6.6 98 646-759 17-119 (169)
116 cd07595 BAR_RhoGAP_Rich-like T 99.3 3.8E-10 8.1E-15 114.4 24.7 202 16-221 16-228 (244)
117 cd01263 PH_anillin Anillin Ple 99.3 4.5E-12 9.8E-17 113.4 9.4 94 297-424 4-122 (122)
118 cd01253 PH_beta_spectrin Beta- 99.3 7.3E-12 1.6E-16 111.1 10.6 94 297-423 2-103 (104)
119 cd07616 BAR_Endophilin_B1 The 99.3 3.2E-10 7E-15 112.4 22.9 192 16-215 18-227 (229)
120 KOG0510 Ankyrin repeat protein 99.3 1.2E-12 2.7E-17 145.3 6.3 122 616-759 228-362 (929)
121 KOG0505 Myosin phosphatase, re 99.3 4.6E-12 1E-16 135.4 10.5 162 583-759 39-252 (527)
122 KOG0514 Ankyrin repeat protein 99.3 6.4E-12 1.4E-16 127.7 10.8 107 641-759 261-394 (452)
123 PHA02795 ankyrin-like protein; 99.3 1.7E-12 3.6E-17 141.0 7.0 122 620-759 84-242 (437)
124 PHA02792 ankyrin-like protein; 99.3 1.2E-12 2.5E-17 147.3 5.8 111 616-744 342-452 (631)
125 PHA02917 ankyrin-like protein; 99.3 4.4E-12 9.6E-17 147.7 9.9 134 614-759 33-217 (661)
126 KOG0502 Integral membrane anky 99.3 8.1E-13 1.7E-17 125.3 3.0 120 612-758 159-278 (296)
127 PF12796 Ank_2: Ankyrin repeat 99.3 9.2E-13 2E-17 113.3 3.1 80 654-759 1-80 (89)
128 PF13637 Ank_4: Ankyrin repeat 99.3 4E-12 8.6E-17 98.1 6.3 54 696-758 1-54 (54)
129 cd01237 Unc112 Unc-112 pleckst 99.3 1.1E-11 2.3E-16 106.4 9.2 81 309-424 18-102 (106)
130 KOG0502 Integral membrane anky 99.3 9.8E-13 2.1E-17 124.7 2.3 95 641-759 153-247 (296)
131 PHA02884 ankyrin repeat protei 99.3 3.3E-12 7.1E-17 133.5 5.6 94 646-759 28-125 (300)
132 cd07613 BAR_Endophilin_A1 The 99.3 1.7E-09 3.7E-14 106.6 23.9 188 16-219 8-218 (223)
133 PHA02730 ankyrin-like protein; 99.3 1.1E-11 2.5E-16 140.8 9.4 130 614-759 379-519 (672)
134 cd07618 BAR_Rich1 The Bin/Amph 99.3 2.6E-09 5.6E-14 107.3 24.9 203 16-222 16-231 (246)
135 PHA02743 Viral ankyrin protein 99.3 2.5E-12 5.3E-17 124.4 3.1 98 643-758 13-114 (166)
136 cd07617 BAR_Endophilin_B2 The 99.2 2.4E-09 5.1E-14 105.1 23.5 183 16-215 18-218 (220)
137 PHA02730 ankyrin-like protein; 99.2 6.6E-12 1.4E-16 142.8 6.6 140 613-759 41-258 (672)
138 smart00233 PH Pleckstrin homol 99.2 1.3E-10 2.9E-15 101.3 12.5 97 295-425 2-101 (102)
139 cd07619 BAR_Rich2 The Bin/Amph 99.2 4.9E-09 1.1E-13 105.0 24.4 195 16-222 16-233 (248)
140 KOG1710 MYND Zn-finger and ank 99.2 1E-11 2.2E-16 122.3 5.0 119 615-755 14-132 (396)
141 KOG0505 Myosin phosphatase, re 99.2 6.7E-12 1.5E-16 134.2 3.8 123 617-759 44-219 (527)
142 PLN03192 Voltage-dependent pot 99.2 1.8E-11 3.8E-16 147.9 7.9 122 613-746 558-700 (823)
143 PHA02792 ankyrin-like protein; 99.2 3.6E-11 7.9E-16 135.4 8.7 117 619-759 78-238 (631)
144 cd00204 ANK ankyrin repeats; 99.2 7.6E-11 1.6E-15 107.2 8.2 118 615-758 9-126 (126)
145 KOG0512 Fetal globin-inducing 99.1 6.2E-11 1.3E-15 108.6 6.6 114 611-747 95-210 (228)
146 PHA02736 Viral ankyrin protein 99.1 9.8E-12 2.1E-16 118.8 0.8 97 646-759 13-113 (154)
147 PF15410 PH_9: Pleckstrin homo 99.1 3.2E-10 6.8E-15 102.7 9.1 106 296-424 2-117 (119)
148 cd07590 BAR_Bin3 The Bin/Amphi 99.1 6.5E-08 1.4E-12 96.5 26.2 198 17-220 13-215 (225)
149 KOG0507 CASK-interacting adapt 99.1 8.9E-11 1.9E-15 129.8 6.0 122 612-759 48-169 (854)
150 KOG4424 Predicted Rho/Rac guan 99.1 3.8E-08 8.3E-13 106.4 24.3 109 290-432 268-376 (623)
151 COG0666 Arp FOG: Ankyrin repea 99.1 1.8E-10 4E-15 116.5 6.0 123 616-759 76-201 (235)
152 TIGR00870 trp transient-recept 99.0 1.8E-10 3.9E-15 138.2 6.5 63 694-759 126-196 (743)
153 KOG0507 CASK-interacting adapt 99.0 7.7E-11 1.7E-15 130.3 2.9 121 617-759 7-136 (854)
154 cd00821 PH Pleckstrin homology 99.0 8.1E-10 1.8E-14 95.2 8.5 94 296-423 1-95 (96)
155 KOG4214 Myotrophin and similar 99.0 8.9E-11 1.9E-15 96.3 2.1 66 682-759 23-88 (117)
156 TIGR00870 trp transient-recept 99.0 1.5E-10 3.1E-15 139.0 4.1 126 613-759 128-278 (743)
157 KOG0515 p53-interacting protei 99.0 6.5E-10 1.4E-14 117.8 8.2 116 617-757 554-671 (752)
158 cd07600 BAR_Gvp36 The Bin/Amph 99.0 3.3E-08 7.2E-13 99.7 20.1 198 10-215 32-240 (242)
159 KOG0702 Predicted GTPase-activ 99.0 4.9E-10 1.1E-14 118.5 7.1 121 473-609 12-133 (524)
160 PTZ00322 6-phosphofructo-2-kin 99.0 2.2E-10 4.8E-15 134.4 4.5 85 653-759 85-169 (664)
161 cd01256 PH_dynamin Dynamin ple 99.0 3.8E-09 8.3E-14 87.5 9.5 92 294-423 1-103 (110)
162 cd01218 PH_phafin2 Phafin2 Pl 99.0 5.7E-09 1.2E-13 91.0 10.9 100 293-430 3-103 (104)
163 cd07620 BAR_SH3BP1 The Bin/Amp 98.9 3.3E-07 7.2E-12 91.2 23.1 192 16-219 16-239 (257)
164 PTZ00322 6-phosphofructo-2-kin 98.9 7.3E-10 1.6E-14 130.1 5.3 110 617-743 86-196 (664)
165 cd00900 PH-like Pleckstrin hom 98.9 9E-09 1.9E-13 89.2 10.4 92 297-424 2-99 (99)
166 KOG3676 Ca2+-permeable cation 98.9 1.5E-09 3.3E-14 121.9 6.7 124 614-759 185-329 (782)
167 cd07591 BAR_Rvs161p The Bin/Am 98.9 1.5E-06 3.2E-11 87.6 26.7 197 17-219 13-213 (224)
168 cd00204 ANK ankyrin repeats; 98.9 2E-09 4.4E-14 97.7 5.3 91 647-759 4-94 (126)
169 PF13637 Ank_4: Ankyrin repeat 98.9 2.8E-10 6E-15 87.7 -0.5 54 650-716 1-54 (54)
170 cd07588 BAR_Amphiphysin The Bi 98.8 3.3E-06 7.2E-11 83.6 27.1 193 17-220 14-209 (211)
171 PF13606 Ank_3: Ankyrin repeat 98.8 3.1E-09 6.7E-14 70.5 3.9 30 695-724 1-30 (30)
172 PF08397 IMD: IRSp53/MIM homol 98.8 1.2E-06 2.6E-11 88.5 24.5 186 24-213 5-204 (219)
173 KOG0690 Serine/threonine prote 98.8 8.2E-09 1.8E-13 104.4 8.3 107 290-430 11-121 (516)
174 cd07599 BAR_Rvs167p The Bin/Am 98.8 3.5E-06 7.6E-11 85.0 27.0 196 16-213 3-212 (216)
175 cd01234 PH_CADPS CADPS (Ca2+-d 98.8 5.7E-09 1.2E-13 87.2 5.4 94 295-425 3-110 (117)
176 cd07598 BAR_FAM92 The Bin/Amph 98.8 4.8E-06 1E-10 82.7 26.7 193 16-217 5-202 (211)
177 KOG1118 Lysophosphatidic acid 98.8 1.3E-06 2.9E-11 87.4 22.2 183 16-214 27-232 (366)
178 KOG3676 Ca2+-permeable cation 98.7 8.9E-09 1.9E-13 115.8 4.4 122 617-759 147-294 (782)
179 PF06456 Arfaptin: Arfaptin-li 98.7 1.5E-05 3.2E-10 80.3 26.9 182 23-209 41-228 (229)
180 cd07660 BAR_Arfaptin The Bin/A 98.7 9.4E-06 2E-10 78.6 23.8 186 20-212 4-196 (201)
181 COG0666 Arp FOG: Ankyrin repea 98.7 1.6E-08 3.5E-13 102.1 5.0 93 646-759 69-168 (235)
182 PF00023 Ank: Ankyrin repeat H 98.7 2.7E-08 5.8E-13 68.0 4.2 30 695-724 1-30 (33)
183 cd00011 BAR_Arfaptin_like The 98.7 2.2E-05 4.8E-10 76.4 25.9 187 20-212 4-199 (203)
184 cd07611 BAR_Amphiphysin_I_II T 98.6 3.5E-05 7.5E-10 75.7 26.6 191 18-220 15-209 (211)
185 cd07612 BAR_Bin2 The Bin/Amphi 98.6 3.2E-05 6.9E-10 75.9 25.8 192 18-220 15-209 (211)
186 KOG0515 p53-interacting protei 98.6 1.4E-08 3E-13 107.9 2.5 65 682-757 571-635 (752)
187 cd07659 BAR_PICK1 The Bin/Amph 98.6 3.6E-05 7.9E-10 73.8 24.8 186 21-211 8-208 (215)
188 PF13857 Ank_5: Ankyrin repeat 98.6 3.1E-09 6.6E-14 82.5 -2.4 55 633-703 2-56 (56)
189 KOG0783 Uncharacterized conser 98.6 1.9E-08 4.1E-13 111.9 2.8 97 628-744 32-128 (1267)
190 KOG1710 MYND Zn-finger and ank 98.6 7.6E-08 1.7E-12 95.4 6.3 65 686-760 37-101 (396)
191 cd01261 PH_SOS Son of Sevenles 98.6 5.4E-07 1.2E-11 79.5 10.4 105 293-426 3-110 (112)
192 KOG4369 RTK signaling protein 98.6 3.9E-08 8.5E-13 112.2 3.9 120 617-759 861-980 (2131)
193 KOG1090 Predicted dual-specifi 98.5 5.2E-08 1.1E-12 109.9 4.0 101 287-425 1627-1731(1732)
194 PF14593 PH_3: PH domain; PDB: 98.5 7.3E-07 1.6E-11 77.5 9.9 92 291-428 10-102 (104)
195 cd01242 PH_ROK Rok (Rho- assoc 98.5 2E-06 4.3E-11 73.9 10.7 105 296-426 2-111 (112)
196 KOG4369 RTK signaling protein 98.4 1.5E-07 3.2E-12 107.7 4.4 124 617-759 896-1048(2131)
197 cd01243 PH_MRCK MRCK (myotonic 98.4 2.2E-06 4.7E-11 74.9 10.5 105 295-424 3-118 (122)
198 cd07596 BAR_SNX The Bin/Amphip 98.4 0.00022 4.8E-09 72.0 26.5 193 20-215 9-217 (218)
199 cd07624 BAR_SNX7_30 The Bin/Am 98.4 0.00015 3.2E-09 72.1 24.4 179 22-215 21-199 (200)
200 PF09325 Vps5: Vps5 C terminal 98.4 0.00019 4.1E-09 73.7 25.8 190 21-215 30-235 (236)
201 cd01259 PH_Apbb1ip Apbb1ip (Am 98.4 1.2E-06 2.5E-11 75.5 7.1 34 392-425 68-108 (114)
202 cd07628 BAR_Atg24p The Bin/Amp 98.4 0.00028 6E-09 69.1 24.8 177 19-215 8-184 (185)
203 PF10455 BAR_2: Bin/amphiphysi 98.3 5.1E-05 1.1E-09 78.2 20.0 137 76-217 151-287 (289)
204 cd07605 I-BAR_IMD Inverse (I)- 98.3 0.00027 5.9E-09 70.6 23.6 187 27-215 18-217 (223)
205 cd01239 PH_PKD Protein kinase 98.3 2.7E-06 5.8E-11 73.6 7.6 96 295-424 1-117 (117)
206 KOG0522 Ankyrin repeat protein 98.3 8.9E-07 1.9E-11 95.2 5.6 64 683-757 44-107 (560)
207 cd07623 BAR_SNX1_2 The Bin/Amp 98.2 0.00072 1.6E-08 68.5 25.8 189 22-215 19-221 (224)
208 cd07627 BAR_Vps5p The Bin/Amph 98.2 0.00047 1E-08 69.5 24.3 186 23-213 12-213 (216)
209 cd07664 BAR_SNX2 The Bin/Amphi 98.2 0.001 2.2E-08 67.3 25.7 189 22-215 29-231 (234)
210 KOG3725 SH3 domain protein SH3 98.2 0.00029 6.2E-09 69.0 20.5 193 16-212 38-257 (375)
211 KOG0506 Glutaminase (contains 98.2 1.5E-06 3.3E-11 91.7 5.3 87 614-759 507-594 (622)
212 cd07589 BAR_DNMBP The Bin/Amph 98.2 0.00064 1.4E-08 67.2 23.7 178 17-210 7-186 (195)
213 KOG3771 Amphiphysin [Intracell 98.1 0.00056 1.2E-08 73.6 23.2 190 23-223 38-230 (460)
214 KOG0782 Predicted diacylglycer 98.1 2E-06 4.3E-11 92.3 4.0 116 617-758 870-987 (1004)
215 cd07661 BAR_ICA69 The Bin/Amph 98.1 0.0021 4.6E-08 61.4 23.7 189 19-213 3-200 (204)
216 PF06730 FAM92: FAM92 protein; 98.1 0.0042 9E-08 61.0 26.0 194 13-212 2-204 (219)
217 KOG0520 Uncharacterized conser 98.1 3.3E-05 7.2E-10 90.0 13.1 124 617-759 578-701 (975)
218 cd07665 BAR_SNX1 The Bin/Amphi 98.1 0.0035 7.6E-08 63.2 25.7 189 22-215 29-231 (234)
219 KOG2059 Ras GTPase-activating 98.0 9.6E-06 2.1E-10 90.0 7.0 97 291-425 562-664 (800)
220 KOG0521 Putative GTPase activa 98.0 2E-06 4.4E-11 100.7 1.7 95 641-757 647-741 (785)
221 KOG3640 Actin binding protein 98.0 1.2E-05 2.7E-10 91.5 7.6 102 291-426 987-1107(1116)
222 KOG3751 Growth factor receptor 98.0 4E-05 8.8E-10 82.3 10.8 108 288-425 311-424 (622)
223 KOG2384 Major histocompatibili 97.9 2E-05 4.3E-10 74.2 5.9 65 684-759 2-67 (223)
224 KOG0932 Guanine nucleotide exc 97.9 3.7E-05 8E-10 83.0 8.7 113 287-430 499-621 (774)
225 cd07622 BAR_SNX4 The Bin/Amphi 97.9 0.012 2.5E-07 58.4 25.2 179 21-215 20-198 (201)
226 cd07630 BAR_SNX_like The Bin/A 97.8 0.011 2.3E-07 58.4 24.5 181 24-211 13-193 (198)
227 PTZ00267 NIMA-related protein 97.8 5.1E-05 1.1E-09 86.6 9.4 101 292-425 375-476 (478)
228 cd07645 I-BAR_IMD_BAIAP2L1 Inv 97.8 0.014 3.1E-07 56.8 24.1 198 14-212 5-215 (226)
229 cd07644 I-BAR_IMD_BAIAP2L2 Inv 97.8 0.019 4.1E-07 55.3 23.9 198 12-212 3-206 (215)
230 cd07629 BAR_Atg20p The Bin/Amp 97.8 0.017 3.6E-07 56.7 24.3 177 18-214 7-185 (187)
231 cd07646 I-BAR_IMD_IRSp53 Inver 97.7 0.029 6.3E-07 55.2 25.2 198 14-212 7-217 (232)
232 cd07621 BAR_SNX5_6 The Bin/Amp 97.7 0.025 5.4E-07 56.4 25.1 179 24-211 33-212 (219)
233 KOG0522 Ankyrin repeat protein 97.7 1.9E-05 4.1E-10 85.2 3.1 87 617-718 24-110 (560)
234 cd07662 BAR_SNX6 The Bin/Amphi 97.7 0.028 6.1E-07 55.4 24.5 189 11-212 23-212 (218)
235 cd01262 PH_PDK1 3-Phosphoinosi 97.7 0.00015 3.3E-09 60.4 7.3 87 294-424 1-87 (89)
236 cd07667 BAR_SNX30 The Bin/Amph 97.7 0.035 7.6E-07 56.0 25.4 181 21-213 57-237 (240)
237 KOG1739 Serine/threonine prote 97.6 5E-05 1.1E-09 80.7 4.7 95 293-426 23-117 (611)
238 cd07663 BAR_SNX5 The Bin/Amphi 97.6 0.045 9.7E-07 54.4 24.8 179 24-211 32-211 (218)
239 cd07607 BAR_SH3P_plant The Bin 97.5 0.09 2E-06 49.6 23.6 187 26-214 12-207 (209)
240 cd01226 PH_exo84 Exocyst compl 97.5 0.00074 1.6E-08 58.0 9.2 39 387-425 60-98 (100)
241 KOG0705 GTPase-activating prot 97.5 6.1E-05 1.3E-09 81.7 2.9 108 578-723 614-721 (749)
242 cd01258 PH_syntrophin Syntroph 97.5 0.00048 1E-08 60.1 7.9 34 390-423 72-107 (108)
243 cd07625 BAR_Vps17p The Bin/Amp 97.5 0.13 2.8E-06 51.8 26.1 185 9-205 19-219 (230)
244 cd01240 PH_beta-ARK Beta adren 97.4 0.00019 4.1E-09 61.2 4.3 97 293-426 2-99 (116)
245 cd01222 PH_clg Clg (common-sit 97.4 0.0015 3.3E-08 56.3 9.6 50 374-425 43-95 (97)
246 KOG0783 Uncharacterized conser 97.4 7E-05 1.5E-09 84.3 1.7 57 687-751 45-102 (1267)
247 KOG3876 Arfaptin and related p 97.4 0.046 1E-06 54.2 20.6 170 19-206 126-305 (341)
248 cd07653 F-BAR_CIP4-like The F- 97.3 0.27 5.9E-06 50.8 28.8 160 22-182 5-193 (251)
249 KOG3609 Receptor-activated Ca2 97.3 0.00042 9.1E-09 79.4 6.8 122 615-759 27-152 (822)
250 cd07666 BAR_SNX7 The Bin/Amphi 97.3 0.17 3.8E-06 51.3 24.8 180 22-213 61-240 (243)
251 cd07643 I-BAR_IMD_MIM Inverse 97.3 0.12 2.6E-06 50.9 22.7 114 30-144 23-142 (231)
252 KOG0248 Cytoplasmic protein Ma 97.3 0.00015 3.3E-09 80.1 3.0 98 292-428 247-344 (936)
253 PLN02866 phospholipase D 97.3 0.0012 2.7E-08 78.1 10.7 36 390-425 272-307 (1068)
254 PF13606 Ank_3: Ankyrin repeat 97.3 0.00024 5.3E-09 47.0 2.9 23 734-759 1-23 (30)
255 cd01224 PH_Collybistin Collybi 97.3 0.0033 7.1E-08 54.9 10.5 94 295-423 3-105 (109)
256 PTZ00283 serine/threonine prot 97.2 0.0047 1E-07 70.8 14.5 37 390-426 453-490 (496)
257 KOG3723 PH domain protein Melt 97.2 0.00031 6.6E-09 76.2 3.8 106 290-431 731-842 (851)
258 PF12814 Mcp5_PH: Meiotic cell 97.2 0.0043 9.3E-08 56.5 10.8 35 391-425 87-121 (123)
259 cd07651 F-BAR_PombeCdc15_like 97.1 0.46 1E-05 48.6 26.3 96 24-120 7-103 (236)
260 PF00023 Ank: Ankyrin repeat H 97.0 0.00057 1.2E-08 46.4 2.9 23 734-759 1-23 (33)
261 PLN00188 enhanced disease resi 97.0 0.0025 5.4E-08 72.8 9.4 98 293-428 3-112 (719)
262 KOG3651 Protein kinase C, alph 97.0 0.085 1.8E-06 53.4 18.7 188 19-214 136-341 (429)
263 smart00248 ANK ankyrin repeats 97.0 0.0011 2.3E-08 42.3 3.9 29 695-723 1-29 (30)
264 cd07658 F-BAR_NOSTRIN The F-BA 96.9 0.5 1.1E-05 48.4 24.8 107 25-133 8-118 (239)
265 cd07626 BAR_SNX9_like The Bin/ 96.9 0.52 1.1E-05 46.5 23.8 178 21-211 3-193 (199)
266 cd07674 F-BAR_FCHO1 The F-BAR 96.9 0.36 7.9E-06 50.2 23.4 91 25-117 8-99 (261)
267 KOG0818 GTPase-activating prot 96.8 0.00086 1.9E-08 71.8 3.0 54 652-718 169-222 (669)
268 cd07648 F-BAR_FCHO The F-BAR ( 96.7 0.96 2.1E-05 47.1 26.8 150 24-181 7-174 (261)
269 KOG0511 Ankyrin repeat protein 96.7 0.0024 5.3E-08 66.3 5.6 52 699-759 39-90 (516)
270 cd01221 PH_ephexin Ephexin Ple 96.6 0.014 3E-07 52.5 9.4 33 390-422 81-119 (125)
271 cd07610 FCH_F-BAR The Extended 96.6 0.82 1.8E-05 45.0 23.2 152 25-181 3-157 (191)
272 KOG3531 Rho guanine nucleotide 96.5 0.00081 1.8E-08 76.2 0.7 92 295-424 925-1018(1036)
273 KOG0506 Glutaminase (contains 96.5 0.0018 3.9E-08 69.2 2.8 57 694-759 504-560 (622)
274 KOG0511 Ankyrin repeat protein 96.4 0.01 2.2E-07 61.8 8.0 60 614-723 37-96 (516)
275 cd01223 PH_Vav Vav pleckstrin 96.4 0.02 4.2E-07 50.6 8.6 38 390-427 74-113 (116)
276 cd07673 F-BAR_FCHO2 The F-BAR 96.4 1.6 3.5E-05 45.5 24.8 96 25-122 15-111 (269)
277 KOG0782 Predicted diacylglycer 96.4 0.0029 6.2E-08 68.7 3.7 66 683-759 888-955 (1004)
278 cd07637 BAR_ACAP3 The Bin/Amph 96.3 0.66 1.4E-05 45.9 20.0 182 23-225 3-187 (200)
279 cd07675 F-BAR_FNBP1L The F-BAR 96.3 1.6 3.5E-05 44.7 28.7 160 21-181 4-193 (252)
280 cd07657 F-BAR_Fes_Fer The F-BA 96.2 1.7 3.6E-05 44.4 26.0 88 78-170 63-174 (237)
281 cd07650 F-BAR_Syp1p_like The F 96.2 1.7 3.6E-05 44.2 24.5 165 23-193 6-181 (228)
282 cd07676 F-BAR_FBP17 The F-BAR 96.1 2 4.3E-05 44.4 29.6 159 21-184 4-197 (253)
283 cd07597 BAR_SNX8 The Bin/Amphi 96.1 2 4.3E-05 44.2 25.1 135 10-145 17-166 (246)
284 KOG2505 Ankyrin repeat protein 96.0 0.0041 8.9E-08 67.0 2.7 44 694-743 428-471 (591)
285 cd01232 PH_TRIO Trio pleckstri 95.9 0.093 2E-06 46.8 10.6 51 374-426 58-113 (114)
286 cd01225 PH_Cool_Pix Cool (clon 95.9 0.041 8.8E-07 47.9 7.9 54 372-425 55-109 (111)
287 KOG1117 Rho- and Arf-GTPase ac 95.9 0.0057 1.2E-07 69.8 3.3 93 292-426 85-178 (1186)
288 cd07638 BAR_ACAP2 The Bin/Amph 95.9 1.8 3.9E-05 42.7 20.3 42 23-64 3-44 (200)
289 PF10456 BAR_3_WASP_bdg: WASP- 95.7 0.83 1.8E-05 46.4 17.4 188 14-212 33-231 (237)
290 cd07655 F-BAR_PACSIN The F-BAR 95.6 3.5 7.7E-05 42.7 25.3 85 29-114 12-101 (258)
291 cd07647 F-BAR_PSTPIP The F-BAR 95.5 3.5 7.6E-05 42.2 27.7 156 24-181 7-184 (239)
292 PF15406 PH_6: Pleckstrin homo 95.4 0.05 1.1E-06 46.9 6.4 29 394-422 82-110 (112)
293 cd07649 F-BAR_GAS7 The F-BAR ( 95.4 3.7 8E-05 41.8 25.8 108 26-134 9-117 (233)
294 cd07635 BAR_GRAF2 The Bin/Amph 95.2 2.7 5.9E-05 41.6 18.8 43 22-64 2-44 (207)
295 KOG0520 Uncharacterized conser 95.2 0.0023 5.1E-08 75.1 -3.0 88 648-758 572-661 (975)
296 PF15404 PH_4: Pleckstrin homo 95.1 0.16 3.4E-06 49.2 9.7 25 400-424 160-184 (185)
297 PF15408 PH_7: Pleckstrin homo 95.0 0.012 2.5E-07 47.9 1.5 32 393-424 64-96 (104)
298 KOG3543 Ca2+-dependent activat 95.0 0.0078 1.7E-07 66.1 0.5 98 296-430 466-570 (1218)
299 cd07636 BAR_GRAF The Bin/Amphi 95.0 4.1 8.8E-05 40.4 19.3 158 22-211 2-165 (207)
300 KOG2273 Membrane coat complex 94.9 6.6 0.00014 45.1 24.0 104 19-126 278-382 (503)
301 cd01228 PH_BCR-related BCR (br 94.9 0.12 2.6E-06 43.7 7.0 30 395-424 63-93 (96)
302 KOG2384 Major histocompatibili 94.7 0.02 4.4E-07 54.4 2.4 68 642-722 4-72 (223)
303 cd07680 F-BAR_PACSIN1 The F-BA 94.4 7.1 0.00015 40.3 26.9 84 25-109 8-96 (258)
304 cd01231 PH_Lnk LNK-family Plec 94.4 0.24 5.3E-06 42.1 7.8 37 387-423 69-106 (107)
305 cd07307 BAR The Bin/Amphiphysi 94.0 5.2 0.00011 38.7 18.2 60 78-138 62-122 (194)
306 cd07639 BAR_ACAP1 The Bin/Amph 93.9 7.3 0.00016 38.5 19.7 121 23-180 3-124 (200)
307 cd07671 F-BAR_PSTPIP1 The F-BA 93.8 9 0.00019 39.3 25.8 102 27-130 10-112 (242)
308 cd07652 F-BAR_Rgd1 The F-BAR ( 93.8 8.8 0.00019 39.1 24.2 157 24-185 7-193 (234)
309 KOG1737 Oxysterol-binding prot 93.6 0.05 1.1E-06 63.6 3.3 97 294-431 77-174 (799)
310 cd01227 PH_Dbs Dbs (DBL's big 93.5 0.63 1.4E-05 42.6 9.5 36 392-427 80-117 (133)
311 cd07681 F-BAR_PACSIN3 The F-BA 93.4 11 0.00023 38.9 25.8 85 29-114 12-101 (258)
312 cd07603 BAR_ACAPs The Bin/Amph 93.2 9.6 0.00021 37.8 20.4 115 22-140 2-117 (200)
313 cd07668 BAR_SNX9 The Bin/Amphi 93.2 9.3 0.0002 37.5 20.8 184 17-211 7-201 (210)
314 cd07601 BAR_APPL The Bin/Amphi 92.9 11 0.00024 37.7 23.2 125 23-180 3-128 (215)
315 cd07669 BAR_SNX33 The Bin/Amph 92.8 11 0.00023 37.1 19.2 184 17-211 7-201 (207)
316 KOG3609 Receptor-activated Ca2 91.9 0.16 3.5E-06 59.0 4.3 99 612-724 59-159 (822)
317 cd07672 F-BAR_PSTPIP2 The F-BA 91.7 17 0.00037 37.2 25.8 88 28-117 11-100 (240)
318 smart00248 ANK ankyrin repeats 91.3 0.23 4.9E-06 30.9 2.9 23 734-759 1-23 (30)
319 cd01248 PH_PLC Phospholipase C 91.2 1.3 2.9E-05 39.6 8.7 32 391-422 78-113 (115)
320 cd07663 BAR_SNX5 The Bin/Amphi 91.1 18 0.00039 36.2 18.6 173 11-210 23-217 (218)
321 PF08458 PH_2: Plant pleckstri 90.9 1.9 4.2E-05 37.8 8.9 40 387-426 65-104 (110)
322 PF03114 BAR: BAR domain; Int 89.7 23 0.0005 35.3 20.9 41 20-60 24-64 (229)
323 smart00721 BAR BAR domain. 88.8 29 0.00063 35.1 20.8 120 21-143 26-153 (239)
324 cd07685 F-BAR_Fes The F-BAR (F 88.5 29 0.00063 34.9 21.4 65 118-185 132-196 (237)
325 KOG2070 Guanine nucleotide exc 88.2 46 0.001 36.8 20.5 51 373-423 353-404 (661)
326 KOG3891 Secretory vesicle-asso 87.7 40 0.00087 35.5 23.9 136 76-213 106-248 (436)
327 KOG0994 Extracellular matrix g 87.5 80 0.0017 38.8 22.4 118 15-134 1542-1671(1758)
328 cd07670 BAR_SNX18 The Bin/Amph 87.0 33 0.00071 33.7 21.0 183 17-210 7-200 (207)
329 cd07656 F-BAR_srGAP The F-BAR 86.9 39 0.00085 34.6 23.1 66 78-143 68-157 (241)
330 KOG3531 Rho guanine nucleotide 86.9 0.81 1.8E-05 53.0 4.8 44 389-432 808-851 (1036)
331 KOG2856 Adaptor protein PACSIN 86.0 51 0.0011 35.1 21.8 146 35-181 27-208 (472)
332 cd07631 BAR_APPL1 The Bin/Amph 85.9 39 0.00085 33.6 23.9 100 77-189 37-140 (215)
333 KOG0248 Cytoplasmic protein Ma 84.8 0.33 7.1E-06 54.7 0.5 105 284-430 249-353 (936)
334 PF13805 Pil1: Eisosome compon 84.7 52 0.0011 34.0 16.2 96 26-127 54-151 (271)
335 cd07602 BAR_RhoGAP_OPHN1-like 83.8 49 0.0011 32.9 18.6 126 22-179 2-129 (207)
336 KOG1451 Oligophrenin-1 and rel 83.3 89 0.0019 35.5 22.7 48 20-67 18-65 (812)
337 PF15405 PH_5: Pleckstrin homo 82.2 2 4.4E-05 39.7 4.5 35 390-424 97-134 (135)
338 cd01255 PH_TIAM TIAM Pleckstri 82.0 13 0.00028 34.0 9.2 41 389-429 110-158 (160)
339 cd07633 BAR_OPHN1 The Bin/Amph 81.6 57 0.0012 32.2 21.4 156 23-210 3-164 (207)
340 KOG4807 F-actin binding protei 80.7 0.029 6.2E-07 58.5 -9.0 80 310-424 34-113 (593)
341 KOG0517 Beta-spectrin [Cytoske 80.0 0.15 3.2E-06 63.3 -4.8 107 295-430 2300-2414(2473)
342 cd07598 BAR_FAM92 The Bin/Amph 79.6 70 0.0015 32.0 24.2 43 21-63 3-45 (211)
343 cd07621 BAR_SNX5_6 The Bin/Amp 79.6 72 0.0016 32.1 18.8 46 11-56 24-72 (219)
344 cd07604 BAR_ASAPs The Bin/Amph 79.5 72 0.0016 32.0 21.6 41 23-63 3-43 (215)
345 PF06160 EzrA: Septation ring 78.6 1.4E+02 0.003 34.8 26.5 202 14-229 100-320 (560)
346 cd07656 F-BAR_srGAP The F-BAR 78.3 84 0.0018 32.2 16.4 28 114-141 135-162 (241)
347 cd07662 BAR_SNX6 The Bin/Amphi 76.3 88 0.0019 31.3 17.4 38 15-52 30-67 (218)
348 KOG3771 Amphiphysin [Intracell 75.8 86 0.0019 34.8 14.9 149 15-180 37-208 (460)
349 cd07591 BAR_Rvs161p The Bin/Am 75.4 97 0.0021 31.3 19.4 20 159-178 174-193 (224)
350 cd07677 F-BAR_FCHSD2 The F-BAR 75.1 1.1E+02 0.0023 31.6 22.6 92 113-204 127-227 (260)
351 PF00643 zf-B_box: B-box zinc 75.0 2.4 5.1E-05 30.2 2.1 33 486-518 3-36 (42)
352 KOG3549 Syntrophins (type gamm 74.6 9.3 0.0002 40.0 6.9 37 390-426 350-387 (505)
353 cd07606 BAR_SFC_plant The Bin/ 73.9 98 0.0021 30.7 21.7 150 23-210 2-160 (202)
354 cd05128 RasGAP_GAP1_like The G 73.7 2.1 4.6E-05 45.6 2.3 28 291-318 283-314 (315)
355 cd07685 F-BAR_Fes The F-BAR (F 73.5 1.1E+02 0.0023 31.0 24.3 143 23-171 9-159 (237)
356 cd07634 BAR_GAP10-like The Bin 73.0 1E+02 0.0022 30.6 20.4 124 24-179 4-129 (207)
357 cd05135 RasGAP_RASAL Ras GTPas 72.4 4.9 0.00011 43.2 4.6 27 292-318 301-332 (333)
358 cd07679 F-BAR_PACSIN2 The F-BA 70.6 1.3E+02 0.0029 30.9 26.1 81 29-110 12-97 (258)
359 KOG3520 Predicted guanine nucl 69.8 2.9E+02 0.0064 34.5 23.0 56 375-432 670-728 (1167)
360 KOG2996 Rho guanine nucleotide 68.4 2.2E+02 0.0048 32.5 23.1 38 390-427 474-513 (865)
361 KOG3551 Syntrophins (type beta 67.4 12 0.00025 40.0 5.9 60 372-431 215-277 (506)
362 KOG2505 Ankyrin repeat protein 66.8 7.2 0.00016 43.0 4.4 48 709-759 404-451 (591)
363 cd05394 RasGAP_RASA2 RASA2 (or 66.3 1.4 3E-05 46.5 -1.0 28 292-319 281-312 (313)
364 KOG4236 Serine/threonine prote 66.2 6.1 0.00013 44.0 3.7 35 390-425 477-523 (888)
365 cd07686 F-BAR_Fer The F-BAR (F 66.0 1.6E+02 0.0034 30.0 27.1 32 80-111 65-99 (234)
366 PF01286 XPA_N: XPA protein N- 65.6 1.7 3.6E-05 29.5 -0.4 27 487-513 4-31 (34)
367 PF11781 RRN7: RNA polymerase 64.5 5.2 0.00011 27.6 1.9 26 485-513 7-32 (36)
368 cd07590 BAR_Bin3 The Bin/Amphi 63.4 1.7E+02 0.0038 29.5 22.6 171 24-210 13-190 (225)
369 KOG4424 Predicted Rho/Rac guan 63.3 9.9 0.00021 42.8 4.7 54 373-426 541-596 (623)
370 PRK12495 hypothetical protein; 61.9 6.5 0.00014 38.7 2.7 36 476-515 30-67 (226)
371 PF11929 DUF3447: Domain of un 61.9 12 0.00026 30.6 4.0 47 697-759 7-53 (76)
372 cd05134 RasGAP_RASA3 RASA3 (or 60.0 2.7 5.9E-05 44.5 -0.3 28 292-319 278-309 (310)
373 KOG1729 FYVE finger containing 59.8 14 0.00031 38.6 5.0 44 388-431 103-146 (288)
374 KOG1738 Membrane-associated gu 59.8 1.5 3.2E-05 49.6 -2.3 39 293-332 561-601 (638)
375 KOG4407 Predicted Rho GTPase-a 59.8 0.99 2.2E-05 54.6 -3.8 51 374-424 989-1040(1973)
376 KOG0592 3-phosphoinositide-dep 58.3 13 0.00028 41.8 4.5 88 292-424 449-536 (604)
377 PF00320 GATA: GATA zinc finge 57.7 9 0.0002 26.4 2.1 31 489-519 1-33 (36)
378 KOG3362 Predicted BBOX Zn-fing 56.9 4.2 9E-05 37.0 0.4 34 484-518 116-150 (156)
379 smart00401 ZnF_GATA zinc finge 56.8 8.3 0.00018 29.1 2.0 36 486-521 3-40 (52)
380 cd05395 RasGAP_RASA4 Ras GTPas 56.8 7.5 0.00016 41.7 2.4 26 294-319 301-331 (337)
381 KOG4302 Microtubule-associated 56.8 3.9E+02 0.0085 31.5 23.4 119 12-136 164-282 (660)
382 cd07651 F-BAR_PombeCdc15_like 55.7 2.4E+02 0.0052 28.6 20.4 29 15-43 23-51 (236)
383 KOG4240 Multidomain protein, c 55.6 3.1E+02 0.0067 33.9 15.5 36 393-428 894-931 (1025)
384 PF06034 DUF919: Nucleopolyhed 53.7 1.1E+02 0.0023 24.1 7.5 53 113-171 7-59 (62)
385 PF08271 TF_Zn_Ribbon: TFIIB z 52.2 8.6 0.00019 27.6 1.4 25 488-513 2-26 (43)
386 PF06128 Shigella_OspC: Shigel 52.0 26 0.00056 34.9 4.9 28 694-721 252-279 (284)
387 cd07678 F-BAR_FCHSD1 The F-BAR 50.5 3.1E+02 0.0067 28.4 26.3 31 113-143 126-156 (263)
388 KOG3507 DNA-directed RNA polym 50.5 7.5 0.00016 29.6 0.8 30 485-519 19-48 (62)
389 KOG0994 Extracellular matrix g 50.2 6.1E+02 0.013 31.8 24.6 36 28-63 1449-1484(1758)
390 PF04740 LXG: LXG domain of WX 50.1 2.6E+02 0.0057 27.5 18.6 33 24-56 5-37 (204)
391 KOG1170 Diacylglycerol kinase 49.7 18 0.0004 42.2 4.1 51 373-424 43-93 (1099)
392 PF13949 ALIX_LYPXL_bnd: ALIX 49.6 3.3E+02 0.0071 28.5 24.4 123 12-139 81-208 (296)
393 cd07648 F-BAR_FCHO The F-BAR ( 49.4 3.2E+02 0.0068 28.2 23.7 25 114-138 120-144 (261)
394 PF07200 Mod_r: Modifier of ru 48.9 1.5E+02 0.0033 27.6 9.8 50 78-132 97-146 (150)
395 KOG3973 Uncharacterized conser 47.2 3.8E+02 0.0083 28.5 19.5 65 121-185 162-226 (465)
396 cd07627 BAR_Vps5p The Bin/Amph 47.1 3.1E+02 0.0067 27.4 23.0 39 14-52 10-48 (216)
397 PRK04778 septation ring format 46.7 5.4E+02 0.012 30.1 27.1 148 14-164 104-270 (569)
398 KOG4460 Nuclear pore complex, 46.5 4.6E+02 0.0099 29.9 13.7 79 117-197 566-644 (741)
399 cd07654 F-BAR_FCHSD The F-BAR 46.5 3.6E+02 0.0078 28.0 29.5 90 20-112 3-105 (264)
400 PF09602 PhaP_Bmeg: Polyhydrox 46.2 2.7E+02 0.0058 26.5 12.7 29 12-40 16-44 (165)
401 PRK11019 hypothetical protein; 46.0 8.8 0.00019 32.4 0.7 39 485-524 35-75 (88)
402 PF09712 PHA_synth_III_E: Poly 45.7 3.9E+02 0.0085 28.2 24.9 55 129-183 137-191 (293)
403 PF11172 DUF2959: Protein of u 45.2 3.1E+02 0.0068 27.0 16.7 48 100-147 7-58 (201)
404 PF03604 DNA_RNApol_7kD: DNA d 44.7 6.6 0.00014 26.3 -0.2 27 488-519 2-28 (32)
405 PF10168 Nup88: Nuclear pore c 44.2 5.3E+02 0.012 31.1 15.3 28 158-185 583-610 (717)
406 TIGR00613 reco DNA repair prot 43.9 18 0.0004 36.9 2.8 33 483-515 144-177 (241)
407 smart00659 RPOLCX RNA polymera 43.8 10 0.00022 27.5 0.6 27 488-519 4-30 (44)
408 KOG0977 Nuclear envelope prote 43.7 5.6E+02 0.012 29.5 21.9 227 12-253 138-390 (546)
409 PRK00085 recO DNA repair prote 43.4 18 0.0004 37.0 2.7 31 483-513 146-177 (247)
410 PF08580 KAR9: Yeast cortical 43.4 6.5E+02 0.014 30.1 27.6 210 10-220 24-265 (683)
411 cd07641 BAR_ASAP1 The Bin/Amph 42.8 3.6E+02 0.0077 26.9 19.2 31 17-47 11-41 (215)
412 cd07630 BAR_SNX_like The Bin/A 42.4 3.5E+02 0.0076 26.7 23.2 111 25-135 7-118 (198)
413 KOG3551 Syntrophins (type beta 42.3 21 0.00045 38.2 2.8 34 393-426 365-402 (506)
414 PF08385 DHC_N1: Dynein heavy 41.5 6.2E+02 0.013 29.3 22.6 127 8-141 58-205 (579)
415 PF14803 Nudix_N_2: Nudix N-te 41.3 7.5 0.00016 26.5 -0.3 29 487-516 1-32 (34)
416 KOG0976 Rho/Rac1-interacting s 40.5 7.2E+02 0.016 29.8 26.0 32 11-42 88-119 (1265)
417 cd07588 BAR_Amphiphysin The Bi 39.7 4E+02 0.0087 26.6 20.2 36 16-51 20-55 (211)
418 TIGR02419 C4_traR_proteo phage 39.6 12 0.00026 29.5 0.5 33 483-516 28-62 (63)
419 PF04129 Vps52: Vps52 / Sac2 f 39.6 6.4E+02 0.014 29.0 23.9 70 151-221 126-200 (508)
420 KOG1264 Phospholipase C [Lipid 38.4 50 0.0011 38.9 5.3 55 372-426 853-911 (1267)
421 PF14523 Syntaxin_2: Syntaxin- 38.0 1.4E+02 0.0031 25.6 7.2 36 6-41 24-59 (102)
422 KOG0119 Splicing factor 1/bran 36.9 91 0.002 34.7 6.7 114 403-553 206-332 (554)
423 smart00290 ZnF_UBP Ubiquitin C 36.6 21 0.00045 26.4 1.4 25 488-512 1-25 (50)
424 COG1997 RPL43A Ribosomal prote 36.6 39 0.00084 28.3 3.0 31 482-514 31-61 (89)
425 cd07632 BAR_APPL2 The Bin/Amph 36.6 4.4E+02 0.0096 26.2 23.7 120 27-179 7-127 (215)
426 cd07599 BAR_Rvs167p The Bin/Am 36.4 4.4E+02 0.0096 26.2 22.1 157 22-181 2-173 (216)
427 cd07642 BAR_ASAP2 The Bin/Amph 35.1 4.7E+02 0.01 26.1 17.0 117 21-139 15-133 (215)
428 cd07628 BAR_Atg24p The Bin/Amp 34.6 4.4E+02 0.0096 25.6 17.1 39 13-51 9-47 (185)
429 PF12128 DUF3584: Protein of u 34.4 1.1E+03 0.025 30.3 30.4 33 8-40 593-625 (1201)
430 COG1381 RecO Recombinational D 33.9 24 0.00052 36.4 1.8 31 483-513 151-182 (251)
431 PF11365 DUF3166: Protein of u 33.7 1.5E+02 0.0032 25.6 6.1 40 9-48 2-41 (96)
432 cd07595 BAR_RhoGAP_Rich-like T 32.0 5.7E+02 0.012 26.2 19.7 30 20-49 13-42 (244)
433 PF03158 DUF249: Multigene fam 31.6 78 0.0017 30.7 4.6 46 698-758 145-190 (192)
434 cd07612 BAR_Bin2 The Bin/Amphi 31.0 5.5E+02 0.012 25.7 20.0 40 16-55 20-59 (211)
435 cd00202 ZnF_GATA Zinc finger D 30.0 31 0.00066 26.3 1.3 33 488-520 1-35 (54)
436 PF06103 DUF948: Bacterial pro 29.9 3.3E+02 0.0072 22.8 9.2 34 14-47 25-58 (90)
437 KOG0457 Histone acetyltransfer 29.1 40 0.00086 36.9 2.5 41 506-547 38-87 (438)
438 PF15518 L_protein_N: L protei 28.5 1.9E+02 0.004 27.6 6.3 60 131-196 4-63 (183)
439 PHA00080 DksA-like zinc finger 28.4 24 0.00051 28.7 0.5 33 484-517 29-63 (72)
440 PF06103 DUF948: Bacterial pro 28.3 3.1E+02 0.0067 23.0 7.5 34 13-46 31-64 (90)
441 PF01258 zf-dskA_traR: Prokary 28.1 8.6 0.00019 26.4 -1.8 29 488-516 5-34 (36)
442 PF13119 DUF3973: Domain of un 28.0 29 0.00062 24.2 0.8 13 507-519 2-14 (41)
443 cd07683 F-BAR_srGAP1 The F-BAR 27.3 7E+02 0.015 25.6 23.9 48 13-60 3-50 (253)
444 PF06128 Shigella_OspC: Shigel 26.5 98 0.0021 31.0 4.4 48 706-759 227-275 (284)
445 PF08397 IMD: IRSp53/MIM homol 26.1 6.7E+02 0.015 25.0 20.7 89 29-123 3-93 (219)
446 smart00030 CLb CLUSTERIN Beta 25.9 6.4E+02 0.014 24.8 9.7 67 108-174 20-88 (206)
447 PRK13715 conjugal transfer pro 25.5 23 0.00049 28.9 -0.0 33 486-518 34-67 (73)
448 PF13920 zf-C3HC4_3: Zinc fing 24.5 55 0.0012 24.1 1.9 32 486-517 2-34 (50)
449 cd07620 BAR_SH3BP1 The Bin/Amp 24.5 7.9E+02 0.017 25.3 21.3 32 21-52 14-45 (257)
450 PF06160 EzrA: Septation ring 24.4 1.2E+03 0.025 27.2 23.0 31 10-40 156-186 (560)
451 cd07624 BAR_SNX7_30 The Bin/Am 24.4 6.9E+02 0.015 24.6 18.1 50 14-63 20-76 (200)
452 PF07282 OrfB_Zn_ribbon: Putat 23.9 46 0.001 26.5 1.5 26 486-513 28-53 (69)
453 cd07658 F-BAR_NOSTRIN The F-BA 23.8 7.8E+02 0.017 25.0 18.0 158 15-182 23-203 (239)
454 COG2174 RPL34A Ribosomal prote 23.6 49 0.0011 27.9 1.5 36 478-513 26-78 (93)
455 PF12760 Zn_Tnp_IS1595: Transp 23.4 63 0.0014 23.5 2.0 31 482-513 14-44 (46)
456 KOG4305 RhoGEF GTPase [Signal 23.2 4.8E+02 0.01 32.5 10.2 37 395-431 656-692 (1029)
457 TIGR01834 PHA_synth_III_E poly 22.6 9.6E+02 0.021 25.6 20.1 225 11-249 71-319 (320)
458 PF04405 ScdA_N: Domain of Unk 22.4 2.4E+02 0.0053 21.6 5.0 45 706-759 10-54 (56)
459 KOG2751 Beclin-like protein [S 22.2 1.1E+03 0.024 26.2 15.3 120 78-205 108-240 (447)
460 PF10653 Phage-A118_gp45: Prot 22.2 82 0.0018 23.3 2.2 28 8-35 26-53 (62)
461 KOG0250 DNA repair protein RAD 21.8 1.6E+03 0.036 28.1 27.6 49 152-200 339-388 (1074)
462 PF08767 CRM1_C: CRM1 C termin 21.6 3E+02 0.0064 29.5 7.5 113 8-135 32-149 (319)
463 cd07629 BAR_Atg20p The Bin/Amp 21.5 7.6E+02 0.017 24.0 17.8 52 13-64 9-70 (187)
464 PF10764 Gin: Inhibitor of sig 21.4 59 0.0013 23.9 1.4 25 488-513 1-25 (46)
465 cd07173 NR_DBD_AR DNA-binding 21.3 61 0.0013 27.0 1.7 31 485-518 2-32 (82)
466 cd07625 BAR_Vps17p The Bin/Amp 21.1 8.8E+02 0.019 24.6 21.3 118 22-143 18-138 (230)
467 KOG2398 Predicted proline-seri 20.7 1.4E+03 0.031 26.9 20.5 170 12-218 51-221 (611)
468 cd07614 BAR_Endophilin_A2 The 20.7 8.8E+02 0.019 24.5 19.6 56 6-63 33-94 (223)
469 PRK00423 tfb transcription ini 20.6 66 0.0014 34.3 2.3 30 486-516 11-40 (310)
470 PF05075 DUF684: Protein of un 20.6 1.1E+03 0.024 25.5 13.0 117 16-141 3-122 (345)
471 COG1996 RPC10 DNA-directed RNA 20.4 36 0.00079 25.3 0.2 28 488-519 8-35 (49)
472 KOG4739 Uncharacterized protei 20.1 1.1E+02 0.0024 30.9 3.5 60 488-548 5-68 (233)
No 1
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-85 Score=750.51 Aligned_cols=656 Identities=36% Similarity=0.535 Sum_probs=508.0
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-CCCCCCCccccchhHHHH
Q 046849 3 AFIKLEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-GGHDDPVSVSIGGPVISK 81 (760)
Q Consensus 3 ~~e~~~DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-~~~~d~~~~~~~~~~l~~ 81 (760)
..|++.|||+||+++..+|+++..+++.++++++.+..++++..++..+.+.|...+..+. -+.++++. .++|.+
T Consensus 9 ~~e~lkdsp~fr~~~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~~~~----~~~l~~ 84 (785)
T KOG0521|consen 9 AEEFLKDSPQFRSTLDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDEEVI----SETLQK 84 (785)
T ss_pred hHHHhhcChhHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCchhh----hhHHHH
Confidence 4689999999999999999999999999999999999999998888888899998888764 23333332 368999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHH
Q 046849 82 FISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQN 161 (760)
Q Consensus 82 f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~ 161 (760)
|+..++|+.++++.|..++++.+..||.+|++.+|.++++.|++|++++++||.++.||.+++|++++....|.+++|..
T Consensus 85 fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~~l~~ 164 (785)
T KOG0521|consen 85 FSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEEELAA 164 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 162 SKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQVLTYAQQSKEVANVEQDKLAKR 241 (760)
Q Consensus 162 ~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~l~~~ 241 (760)
+|++|++++|||+..++.++.++++++++.+++||++|.+||++|++++.+++||++.+..++++++..++.+++.+.++
T Consensus 165 ~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~ 244 (785)
T KOG0521|consen 165 ARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQR 244 (785)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccCCCCCCccCCCCCCCcccccCccchhhHHHhhhcCCCCcceeEEEEEEeeCCCCCCCceeeEEEEecC
Q 046849 242 IQEFRTQAELDNLGVPVDVEHSVSADGIHVGGTVSYKNIEAVMRSSATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQ 321 (760)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~ 321 (760)
++++..+.+........ + ..|.. ........+.|||+|+.+...+.|+||||..+ +
T Consensus 245 ~q~l~~~~~~~~~~~~~-~-~~~~~---------------------~~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q-~ 300 (785)
T KOG0521|consen 245 YQELRSASNLESRPKSD-S-ASPSG---------------------GNLKLGYRMEGYLRKKASNASKTWKRRWFSIQ-D 300 (785)
T ss_pred HHHHHHHhhhhhhcccc-c-ccccc---------------------ccccchhhhhhhhhhhcccchhhHHhhhhhhh-c
Confidence 99888776555443111 0 11111 11223455689999999887889999999998 6
Q ss_pred ceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccccccCceeccCCCCCCCCceEEEEecC
Q 046849 322 GTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPV 401 (760)
Q Consensus 322 ~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~ 401 (760)
+.+.|........ + ....+|.+|.|++.++..++||||+|++|+
T Consensus 301 ~~l~~~~r~~~~~-------------------------~-----------~~~~dL~~csvk~~~~~~drr~CF~iiS~t 344 (785)
T KOG0521|consen 301 GQLGYQHRGADAE-------------------------N-----------VLIEDLRTCSVKPDAEQRDRRFCFEIISPT 344 (785)
T ss_pred ccccccccccccc-------------------------c-----------cccccchhccccCCcccccceeeEEEecCC
Confidence 6665544322211 0 225689999999987777999999999999
Q ss_pred ceeEEEcCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCC-CCCCCCCCCCCCCCCccchhhhccCchHHHHHH
Q 046849 402 KTYTLQAETEADRMDWTSKITGVIASLLNSDLLQQLRPSAKHIDGN-DPFSTRDVPSLSSHCSLEDEVKANKSDSVSAIL 480 (760)
Q Consensus 402 ~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (760)
|+|+|||+|+.|+.+||.+|++.|..+++...+.+...+..+.... +.+.+.... +......+ ........+..+
T Consensus 345 ks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~s~~~s~~--~~~~~~~~~~~v 420 (785)
T KOG0521|consen 345 KSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDSTGGRNTQSGHSSSASYSTI--TSANTSRE--RLNKGISVIEEV 420 (785)
T ss_pred cceEEecCchhHHHHHHHHHHHHHHHHHhccCcccccccCCCcccccccccccccc--cccccccc--ccccCcchhhhh
Confidence 9999999999999999999999999999988776543321111111 111110000 00000000 112223368899
Q ss_pred hcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHHHHHHhccc
Q 046849 481 RQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYCNSIWEGLL 560 (760)
Q Consensus 481 ~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~ 560 (760)
+..|||..|||||+++|+|+|+|+||.+||+|||+||+||||+||||||+|| .|+++.+.+++.+||..+|.|||+.+
T Consensus 421 q~~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD--~~~~~l~~l~~~lgn~~~N~i~e~~l 498 (785)
T KOG0521|consen 421 QSVPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLD--VWEPELLLLFKNLGNKYVNEIYEALL 498 (785)
T ss_pred hcCCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhh--ccCcHHHHHHHHhCcchhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred cCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcCCCCccccchh------------------hhHHHH
Q 046849 561 LLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRDTSDAKSRTTS------------------IWEAVK 622 (760)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~~~~~~~~~------------------L~~A~~ 622 (760)
+... ..+|.+..+...|+.||++||+++.|....+......... ++.++.
T Consensus 499 ~~~~------------~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (785)
T KOG0521|consen 499 PSYD------------SSKPTASSSRQAREAWIKAKYVERRFSVKEPQIKRLYLERLLEAIKSILESASASGVQISEGVS 566 (785)
T ss_pred cccc------------ccCCCCccchhhhhHhhhcccceeeEeecccchhhhhhhhhhhhhhhhhhhhhhhhhhHhhccc
Confidence 9731 4578887779999999999999999998877654211122 222221
Q ss_pred hcCHHH-HHHHHHhcCCcccCcccCC--------CCCCcccccccc-cc--ccchhhh-hh----cccccCCCCcccCcC
Q 046849 623 TQNLQE-VYRLIVTSDANIINTTFDD--------VVGVDSYHHVDN-TQ--YSEIDFH-KV----KKEENNGPAGCQRIK 685 (760)
Q Consensus 623 ~~~~~~-v~~ll~~g~~d~~n~~~~d--------~~g~t~Lh~A~~-~g--~~~~~~~-~~----~~~~~~~~~ll~~ga 685 (760)
.+.... +..++..+..+ .+....+ ..|.+.+|.... .. ...+..+ .. -.+...+..-..+|+
T Consensus 567 ~~~~~~~v~~l~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~h~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (785)
T KOG0521|consen 567 GSSREETVYHLIVSTLND-ASIRSADFSVPDKSSADGSTTLHYEILECLKLLLFIKELLVKASSDGECLPRIATALAHGC 645 (785)
T ss_pred cCCccccceeeeccCccc-ccccccccccccccccccccccchhhhhccccccchHHHHHHhccCccchhhhhhhhcchh
Confidence 222222 45555444222 3332221 134455665541 10 0000000 00 011112222367888
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCC
Q 046849 686 DSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGA 747 (760)
Q Consensus 686 dvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~ 747 (760)
++|+.++-..|.|+||.|+..|...++++||++||++|. +|..|+||||.+...|+
T Consensus 646 ~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~------~d~~g~~plh~~~~~g~ 701 (785)
T KOG0521|consen 646 CENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNA------LDSKGRTPLHHATASGH 701 (785)
T ss_pred hhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchh------hhccCCCcchhhhhhcc
Confidence 999887777899999999999999999999999999998 55555555555555555
No 2
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-57 Score=474.91 Aligned_cols=377 Identities=32% Similarity=0.531 Sum_probs=268.3
Q ss_pred hhHHHhhhcCCCCcceeEEEEEEeeCCCCC-CCceeeEEEEecCceEEEEecC----------------------CCCCC
Q 046849 279 NIEAVMRSSATGEVQTIKQGYLLKRSSNLR-GDWKRRFFVLNSQGTLYYYRNK----------------------GIKSM 335 (760)
Q Consensus 279 ~~~~~~~~~~~~~~~~~k~G~L~K~~~~~~-~~W~rR~fvl~~~~~l~y~~~~----------------------~~~~~ 335 (760)
..+.....++.+...++|||.|+||+++.- +.|||.|++|.++|.|.||.+- ++.++
T Consensus 287 ~~e~~adtigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~dYM~niHgKEiDL~~tTikvpGK~pp 366 (749)
T KOG0705|consen 287 ALENHADTIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNIHGKEIDLLRTTIKVPGKRPP 366 (749)
T ss_pred chhhhhhhhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHHHHHhcccceeeeeeeeeeccCccCc
Confidence 334455677888899999999999998743 7999999999999999998762 22111
Q ss_pred CCCcccC-CCCCCCCCccccccccccC-----------CCCCCC--Ccc------------ccccccccCceeccCCCCC
Q 046849 336 GSHHHYA-GSADHNGGVFSRFRSRHYR-----------SSSFNE--DSL------------NCRTVDLRTSAIKMDGEDT 389 (760)
Q Consensus 336 g~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~------------~~~~i~l~~~~v~~~~~~~ 389 (760)
-..+-|. .+.....|+....-.++.. |+..+. .+. .++.-...+.+.+. +
T Consensus 367 latsa~ap~Ss~~~NGl~Kdm~~~rSd~Gl~ss~~~Spgsissaittspkl~pPpSp~~nkKkh~RKksTnskhn--d-- 442 (749)
T KOG0705|consen 367 LATSACAPSSSSKSNGLSKDMEPRRSDVGLGSSDCTSPGSISSAITTSPKLHPPPSPHANKKKHSRKKSTNSKHN--D-- 442 (749)
T ss_pred cccccccccccccccccccccccccCCCCCCcccCCCCCCcccccccCccCCCCCCccchhhhhhhhccCCCCCC--c--
Confidence 1110111 1222233333322211111 111110 000 01111111211111 1
Q ss_pred CCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccchhh
Q 046849 390 DLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGVIASLLNSDLLQQLRPSAKHIDGNDPFSTRDVPSLSSHCSLEDEV 468 (760)
Q Consensus 390 ~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 468 (760)
+..|||+|++.. .+|+|.|.+.+||+.||+||++.|-..+....... +. .+.
T Consensus 443 EEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~cessk-----------~K----------------s~~ 495 (749)
T KOG0705|consen 443 EEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSK-----------SK----------------SRL 495 (749)
T ss_pred cccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhhhc-----------ch----------------hcc
Confidence 234899999875 78999999999999999999999966554322210 00 001
Q ss_pred hccCchHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhc
Q 046849 469 KANKSDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLG 548 (760)
Q Consensus 469 ~~~~~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~G 548 (760)
..+.....++.|+..+||..|+||+.++|.|||+|+|+.+||+||||||.||+|+|+||||.|| .|..+.+.+|.++|
T Consensus 496 ~sqsea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLD--dWPvEl~~Vm~aiG 573 (749)
T KOG0705|consen 496 TSQSEAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELD--DWPVELLKVMSAIG 573 (749)
T ss_pred chhhhHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccc--cCcHHHHHHHHHhh
Confidence 1234567789999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred hHHHHHHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcCCCCccccchh-hhHHHHhcCHH
Q 046849 549 NAYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRDTSDAKSRTTS-IWEAVKTQNLQ 627 (760)
Q Consensus 549 N~~~n~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~~~~~~~~~-L~~A~~~~~~~ 627 (760)
|+.||++||..+.. ..||.+++.+++||+||++||+.+.|+.|.+... .++++ |+.|+...|+.
T Consensus 574 N~~AN~vWE~~~~G--------------~~KPs~~s~REEkErwIr~KYeqklFLaPl~~te-~~lgqqLl~A~~~~Dl~ 638 (749)
T KOG0705|consen 574 NDLANSVWEGSSQG--------------QTKPSPDSSREEKERWIRAKYEQKLFLAPLPCTE-EPLGQQLLRAVAAEDLQ 638 (749)
T ss_pred hhHHHHHhhhhccC--------------CcCCCccccHHHHHHHHHHHHHHHhhcCCCCCCC-CchHHHHHHHHHHHHHH
Confidence 99999999995544 6799999999999999999999999999988765 56666 99999999999
Q ss_pred HHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcC
Q 046849 628 EVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCG 707 (760)
Q Consensus 628 ~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g 707 (760)
.+..||.+|....+|....+. +|+||||+||..|
T Consensus 639 t~~lLLAhg~~~e~~~t~~~~----------------------------------------------~grt~LHLa~~~g 672 (749)
T KOG0705|consen 639 TAILLLAHGSREEVNETCGEG----------------------------------------------DGRTALHLAARKG 672 (749)
T ss_pred HHHHHHhccCchhhhccccCC----------------------------------------------CCcchhhhhhhhc
Confidence 999999998554355544443 4666666666666
Q ss_pred CHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 708 NLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 708 ~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
++.+.++|+.+|+|+.+ +|.+|+|||.||...|. .+.+.+|+
T Consensus 673 nVvl~QLLiWyg~dv~~------rda~g~t~l~yar~a~s---qec~d~ll 714 (749)
T KOG0705|consen 673 NVVLAQLLIWYGVDVMA------RDAHGRTALFYARQAGS---QECIDVLL 714 (749)
T ss_pred chhHHHHHHHhCcccee------cccCCchhhhhHhhccc---HHHHHHHH
Confidence 66666666666666655 66666666666666666 44444443
No 3
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-49 Score=414.90 Aligned_cols=344 Identities=22% Similarity=0.395 Sum_probs=294.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh------CCCCCCCccccchhH
Q 046849 5 IKLEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG------GGHDDPVSVSIGGPV 78 (760)
Q Consensus 5 e~~~DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~------~~~~d~~~~~~~~~~ 78 (760)
+|++|||+||..+..+|.+++...+.++.++|.++.++.++.+++.+..+|++.|.+|. ..+||+..++ .+
T Consensus 10 d~~ldsp~fre~l~~he~el~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia---~s 86 (812)
T KOG1451|consen 10 DCYLDSPDFRERLKCHEVELDRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIA---TS 86 (812)
T ss_pred ccccCChHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHH---HH
Confidence 68999999999999999999999999999999999999999999999999999999975 3467887665 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHH
Q 046849 79 ISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEED 158 (760)
Q Consensus 79 l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~ 158 (760)
|+.|+..|.++++.+..|+.+....+++||++|+++.|.-.||.||+|||..++|++.|+|++.++.++ ...++|++.|
T Consensus 87 lkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEqIG~~KE~KkKydKe~ekfy~~LekHLhLSskk-esqlqeAD~Q 165 (812)
T KOG1451|consen 87 LKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQIGTLKEEKKKYDKESEKFYQTLEKHLHLSSKK-ESQLQEADAQ 165 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHhhhhHHHHhhhhhhhHHHHHHHHHHhccccch-hhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877 7789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HH
Q 046849 159 LQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQVLTYAQQSKEVANV---EQ 235 (760)
Q Consensus 159 l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l~~~~~~~r~~~~~---~~ 235 (760)
++..|+.|.+++|+||..++++|++++|+|||++++|++++++|||.|+++.+++.||.+.++..+|++|+.++. |.
T Consensus 166 vd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~ 245 (812)
T KOG1451|consen 166 VDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEA 245 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864 45
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCccCCCCCCCcccccCccchhhHHHhhhcCCCCcceeEEEEEEeeCC-CCCCCceee
Q 046849 236 DKLAKRIQEFRTQAELDNLGVPVDVEHSVSADGIHVGGTVSYKNIEAVMRSSATGEVQTIKQGYLLKRSS-NLRGDWKRR 314 (760)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~G~L~K~~~-~~~~~W~rR 314 (760)
++|+++|.+... .. ....+.+|+|||+.+-+ .++++|.|.
T Consensus 246 EeLkKkmke~p~-------e~--------------------------------k~p~p~t~eGYlY~QEK~~~g~sWvKy 286 (812)
T KOG1451|consen 246 EELKKKMKESPT-------ED--------------------------------KRPTPSTKEGYLYMQEKSKIGKSWVKY 286 (812)
T ss_pred HHHHHHHhhCcc-------cc--------------------------------cCCCCcccceeeeehhhhhccchhhhh
Confidence 556666654221 00 01134678999996643 367799999
Q ss_pred EEEEecCce-EEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccccccCceeccCCCCCCCCc
Q 046849 315 FFVLNSQGT-LYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTVDLRTSAIKMDGEDTDLRL 393 (760)
Q Consensus 315 ~fvl~~~~~-l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~ 393 (760)
||+...+.. +..-.- ++..|- ... ..+++.+..|+.+. .+.+|+||
T Consensus 287 YC~Y~retk~~TMvp~----------------~qk~g~------------k~g----~~~~~~lKsC~RRk-tdSIdKRF 333 (812)
T KOG1451|consen 287 YCVYSRETKIFTMVPA----------------NQKTGT------------KMG----QTATFKLKSCSRRK-TDSIDKRF 333 (812)
T ss_pred eeEeecccceEEEeec----------------ccCCCC------------cCC----CcceEEehhhccCc-ccccccce
Confidence 998864432 222211 111111 011 14467788887776 78899999
Q ss_pred eEEEEecCc--eeEEEcCCHHHHHHHHHHHHHH
Q 046849 394 CFRIISPVK--TYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 394 ~F~i~~~~~--~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
||+|....| +.++||.||+|+..||+||.++
T Consensus 334 CFDve~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 334 CFDVEVEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 999999875 6999999999999999999876
No 4
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.8e-40 Score=322.91 Aligned_cols=201 Identities=56% Similarity=0.981 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKEL 95 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~ 95 (760)
.|..+|++++.++..++||+|.|+.|++++++++.++..|+.+|.+|+++++|++.+++||++|.+|+.+++|+.++++.
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~ 81 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEV 81 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999989999998888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 96 LRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVS 175 (760)
Q Consensus 96 l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~ 175 (760)
|++++++.++.||++|+++||+++||.||+|||++.+||++++||++++|+++++.++|++++|..+|++|++++||||.
T Consensus 82 L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv~ 161 (202)
T cd07606 82 LRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLMN 161 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 046849 176 ALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPY 216 (760)
Q Consensus 176 ~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~ 216 (760)
+|+.++.+|+|+||++|++||+||++|||+||+++.+++||
T Consensus 162 ~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~py 202 (202)
T cd07606 162 RLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEPY 202 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999986
No 5
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=100.00 E-value=3.9e-40 Score=318.43 Aligned_cols=201 Identities=22% Similarity=0.440 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-----CC-CCCCCccccchhHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-----GG-HDDPVSVSIGGPVISKFISAFR 87 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-----~~-~~d~~~~~~~~~~l~~f~~~l~ 87 (760)
|+.|..+|.+++.+++.|++|+|.|+.|++++++++.++..|+.+|.+|+ ++ ++|+..+. .+|.+|+..+.
T Consensus 1 R~~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~---~~L~kF~~~l~ 77 (207)
T cd07602 1 RENLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIA---ESLKEFGRLIE 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHH---HHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999987 43 77776544 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHH
Q 046849 88 ELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFE 167 (760)
Q Consensus 88 el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~ 167 (760)
+++++++.|+++++..++.||++|++++|+.+|+.||+|||.+++||++++||++++|++++..+.|++++|..+|++|+
T Consensus 78 ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~ 157 (207)
T cd07602 78 TVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFH 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
+++||||.+|+.+|.+|+|+||++|++||++|++|||+||+++.+++||+
T Consensus 158 ~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py~ 207 (207)
T cd07602 158 QASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPYL 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999985
No 6
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=2e-39 Score=316.50 Aligned_cols=208 Identities=22% Similarity=0.388 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHh-----hCCCCCCCccccchhHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAF-----GGGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
|..|..+|+++..|++.+++|+|.|+.|++++++++.++..|+.+|.+| +.+++|+..+ .+|.+|+.+++|
T Consensus 1 ~~~l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~----~~l~kFs~~l~E 76 (215)
T cd07601 1 RSLLNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILV----STLKQFSKVVDE 76 (215)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHH----HHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999998 3467887653 589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhH-HHHHHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIV-AELEEDLQNSKSAFE 167 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~-~e~~~~l~~~Rk~f~ 167 (760)
+.+++..|++++++.++.||++|+++||+++|+.||+|||++++||++++||++++|+++.+.. .|++++|..+|+.|+
T Consensus 77 l~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~ 156 (215)
T cd07601 77 LSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998754444 699999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTYAQ 225 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~-~~~~~~~~l~~~~~ 225 (760)
+++||||.+||.+|.||+|+||++|++||+||.+|||+||+++. +++||+++++..+|
T Consensus 157 ~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~~~~q 215 (215)
T cd07601 157 QTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDINTSVQ 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999997 99999999987653
No 7
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.2e-39 Score=318.49 Aligned_cols=200 Identities=25% Similarity=0.452 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYK 93 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~ 93 (760)
|+.|...|.+++.|++.|+||+|.|+.|+++...++.++..|+++|.+|+.+..|+..+ +++|.+|+.+++|+++++
T Consensus 1 R~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i---~~~l~kF~~~l~el~~~~ 77 (200)
T cd07603 1 RASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLV---QNCLNKFIQALQEMNNFH 77 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHH---HHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999998888888999999999999776443322 478999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 94 ELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNL 173 (760)
Q Consensus 94 ~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldy 173 (760)
..|++++++.+++||++|+++||+.+||.||+||+++++||++++||++++|+| |..++|++++|+++|+.|+++||||
T Consensus 78 ~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K-~~~~~Ea~~~L~~~Rk~f~~~sldy 156 (200)
T cd07603 78 TILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK-PQEAEEATNILTATRSCFRHTALDY 156 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 8899999999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 174 VSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 174 v~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
|.+|+.+|.+|+++||++|++||+||++|||+|++++++++||+
T Consensus 157 v~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py~ 200 (200)
T cd07603 157 VLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCcC
Confidence 99999999999999999999999999999999999999999985
No 8
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.9e-39 Score=306.71 Aligned_cols=201 Identities=17% Similarity=0.336 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-----C-CCCCCCccccchhHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-----G-GHDDPVSVSIGGPVISKFISAFR 87 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-----~-~~~d~~~~~~~~~~l~~f~~~l~ 87 (760)
|..|+.+|.+|+.+++.|++|+|.|+.++++...++.++.+|+.+|.+|+ + .+||++.++ .+|.+|+..|.
T Consensus 1 r~~l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~---~sL~~F~~~L~ 77 (207)
T cd07633 1 RERLKCYEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIA---ESFKEFAELLQ 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHH---HHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999985 2 367776655 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHH
Q 046849 88 ELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFE 167 (760)
Q Consensus 88 el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~ 167 (760)
++++++..|+++.+..++.||++|+|++|+.+|+.||+|||.+++||+++.|+++++.++++..+.|++.+|...|++|.
T Consensus 78 ~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k~a~~s~k~K~~e~eEA~~~L~~~r~~F~ 157 (207)
T cd07633 78 EVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDRHVNLSSKKKESQLQEADLQVDKERQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
++|||||.+|+.||.+|+|+||++|++||++|++|||+||+++.++.||.
T Consensus 158 ~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~y~ 207 (207)
T cd07633 158 ESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999983
No 9
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=100.00 E-value=3.4e-39 Score=310.78 Aligned_cols=201 Identities=21% Similarity=0.406 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-----CC-CCCCCccccchhHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-----GG-HDDPVSVSIGGPVISKFISAFR 87 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-----~~-~~d~~~~~~~~~~l~~f~~~l~ 87 (760)
|..|..+|.+++.+.+.+++|+|.|+.|++++++++.++..|+.+|.+|+ ++ ++|++.+. .+|.+|+..|+
T Consensus 1 r~~l~~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~---~~L~kF~~~L~ 77 (207)
T cd07636 1 RERLKSHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIA---RSLQEFAAVLR 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHH---HHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999987 44 67776555 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHH
Q 046849 88 ELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFE 167 (760)
Q Consensus 88 el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~ 167 (760)
|++++++.|+++++..++.||++|++++|+.+||.||+|||.+++||++++|++++++++++..++|++++|..+|++|.
T Consensus 78 ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~~~L~~~r~~F~ 157 (207)
T cd07636 78 NLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEADSQVDLVRQHFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
++|||||.+|+.+|.+|+||||++|++||++|++|||+||++++++.||.
T Consensus 158 ~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~y~ 207 (207)
T cd07636 158 EVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSDFK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999983
No 10
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=100.00 E-value=5.5e-39 Score=308.69 Aligned_cols=201 Identities=21% Similarity=0.385 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh------CCCCCCCccccchhHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG------GGHDDPVSVSIGGPVISKFISAFR 87 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~------~~~~d~~~~~~~~~~l~~f~~~l~ 87 (760)
|..|+.+|.+++.+.+.|++|+|.|+.|+++++.++.++..|+.+|.+|+ .++||++.++ .+|.+|+..++
T Consensus 1 r~~l~~~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~---~~l~~Fs~~l~ 77 (207)
T cd07634 1 RERLQCHEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIA---QSLKEFARLLI 77 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHH---HHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999998 4577776554 68999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHH
Q 046849 88 ELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFE 167 (760)
Q Consensus 88 el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~ 167 (760)
++.+++..|++++++.++.||++|++++|+.+||.||+|||.+++||++++|++++++++++..+.|++++|..+|++|+
T Consensus 78 el~~~~~~L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~~kk~~~~~ea~~~l~~~R~~F~ 157 (207)
T cd07634 78 AVEEERRRLIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSAKKKESHLQRADTQIDREHQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
+++||||.+|+.+|.+|+||||++|++||+||++|||+||+++++++||.
T Consensus 158 ~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py~ 207 (207)
T cd07634 158 EASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999983
No 11
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=3.5e-38 Score=303.77 Aligned_cols=199 Identities=21% Similarity=0.370 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC-CCCCCCccccchhHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG-GHDDPVSVSIGGPVISKFISAFRELATY 92 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~l~~f~~~l~el~~~ 92 (760)
|+.|...|.+++.+++.|++|+|.|+.|+++...++.++..|+++|.+|+. +.+|+. .+.+|.+|+.+++|+.++
T Consensus 1 r~~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~----i~~~l~kFs~~l~ei~~~ 76 (200)
T cd07639 1 RAAIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPM----MAECLEKFSDGLNHILDS 76 (200)
T ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch----hHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999986 455554 258999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFN 172 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asld 172 (760)
+..|+++++.++++||++|++++|+.+||.||+|||.+.+||+++.|+++++|+ ++..+.|++++|..+|++|++++||
T Consensus 77 ~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~~k~-k~~e~~Ea~~~l~~~R~~F~~~~ld 155 (200)
T cd07639 77 HAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAETPRR-KAQEVEEAAAALLGARATFRDRALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998865 5667899999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 173 LVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 173 yv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
||.+|+.++.+|+|+||+.|++||++|++|||+||+++++++||+
T Consensus 156 YV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y~ 200 (200)
T cd07639 156 YALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQYR 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999985
No 12
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=4.5e-38 Score=303.58 Aligned_cols=199 Identities=24% Similarity=0.449 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC-CCCCCCccccchhHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG-GHDDPVSVSIGGPVISKFISAFRELATY 92 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~l~~f~~~l~el~~~ 92 (760)
|+.|..+|++++.|+..|+|++|.|+.|+++.++++.+...|+.+|.+|.. +.+|+. ++++|.+|+.+++|+.++
T Consensus 1 r~~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~----i~~~l~kF~~~l~ei~~~ 76 (200)
T cd07638 1 RAALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAV----IETSLTKFSDTLQEMINY 76 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchh----hHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999973 455552 358999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFN 172 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asld 172 (760)
++.|+++++..++.||++|++++|+.+|+.||+|||++++||.++.||++++|+| +..+.|++++|..+|++|++++||
T Consensus 77 ~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k-~~e~eEa~~~l~~~r~~F~~~~ld 155 (200)
T cd07638 77 HTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNK-QHEVEEATNILTATRKCFRHIALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999765 677899999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 173 LVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 173 yv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
||.+|+.+|.+|+|+||+++++||++|++|||+||+++.+++||+
T Consensus 156 Yv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py~ 200 (200)
T cd07638 156 YVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999985
No 13
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=9.2e-38 Score=303.92 Aligned_cols=199 Identities=22% Similarity=0.420 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC-CCCCCCccccchhHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG-GHDDPVSVSIGGPVISKFISAFRELATY 92 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~l~~f~~~l~el~~~ 92 (760)
|+.|...|.+++.|+..|+|++|.|+.|+++...+..+...|+.+|.+|.. ...|+. + ..+|.+|+.++++++++
T Consensus 1 r~~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~-i---~~~L~kF~~~l~ei~~~ 76 (200)
T cd07637 1 RATIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEM-I---SECLDKFGDSLQEMVNY 76 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-H---HHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999966777778999999999874 334443 2 36899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFN 172 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asld 172 (760)
+..|+++++..+++||++|+++||+.+||.||+||+++++||++++|+++++ +++|..++|++++|+++|+.|+++|||
T Consensus 77 ~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k-~kk~~~l~Ea~~~L~~~Rk~f~~asLd 155 (200)
T cd07637 77 HMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAP-RHKPHEVEEATSTLTITRKCFRHLALD 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988876 567888999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 173 LVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 173 yv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
||.+|+.+|.+|+|+||++|++||++|++|||+||+++++++||+
T Consensus 156 yv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~ 200 (200)
T cd07637 156 YVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999985
No 14
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=100.00 E-value=1.5e-37 Score=299.48 Aligned_cols=202 Identities=20% Similarity=0.368 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-----CCCCCCCccccchhHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-----GGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
|..|+.+|.+++.+.+.|++|+|.|+.|+++++.++.++.+|+.+|.+|+ ++.+|+... + +.+|.+|+..+.+
T Consensus 1 r~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~-i-~~sl~ef~~~~~e 78 (207)
T cd07635 1 RERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERC-I-DASLQEFSNFLKN 78 (207)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHH-H-HHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999987 444433211 2 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEK 168 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~ 168 (760)
+.+.++.|+.++++.++.||++|++++|+.+|+.||+|||.+++||++++||+++++++++..+.|++++|..+|++|++
T Consensus 79 l~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~ 158 (207)
T cd07635 79 LEEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYE 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999776666889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 169 SRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 169 asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
+|||||.+|+.+|.+|+|+||++|++||++|++|||+||+++++++||.
T Consensus 159 ~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~y~ 207 (207)
T cd07635 159 LSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNHYK 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999983
No 15
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=100.00 E-value=7.5e-36 Score=284.60 Aligned_cols=208 Identities=22% Similarity=0.374 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-----CCCCCCCccccchhHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-----GGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
|..+..||++...+.++..+|.+.+.++.+++++++.++..|+..|.+|. .+.+|+. + ..+|.+|+..+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~-i---~~~L~kFs~~L~E 76 (215)
T cd07631 1 RSLLGVFEEDAAAISNYFNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEV-M---SSTLQQFSKVIDE 76 (215)
T ss_pred CcHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHH-H---HHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999875 3446665 3 3789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhH-HHHHHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIV-AELEEDLQNSKSAFE 167 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~-~e~~~~l~~~Rk~f~ 167 (760)
+.+++..|++++++.++.||++|++++|+++|+.||+|||.+++||++++||++++|+++++.+ .|+++++..+|++|+
T Consensus 77 l~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F~ 156 (215)
T cd07631 77 LSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988866 468889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFD-LLSKIEPYVHQVLTYAQ 225 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~-~~~~~~~~~~~l~~~~~ 225 (760)
+++||||.+|+.+|.||+|+||++|++||++|.+|||+||+ +..+++||++++...+|
T Consensus 157 ~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l~~~~q 215 (215)
T cd07631 157 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNIGTSVQ 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999 77799999999987653
No 16
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=100.00 E-value=3e-34 Score=270.47 Aligned_cols=206 Identities=20% Similarity=0.321 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-----CCCCCCCccccchhHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-----GGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
|..+..||++...+.++.++|.+...++..+.++.+.+...++..|.+|. -+.+|+.. ..+|.+|+..+.|
T Consensus 1 ~~l~~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v----~~sL~kFs~~L~e 76 (215)
T cd07632 1 RSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEV----ISTLQYFAKVVDE 76 (215)
T ss_pred CcHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH----HHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999998764 24455543 3789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHH-HHHHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVA-ELEEDLQNSKSAFE 167 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~-e~~~~l~~~Rk~f~ 167 (760)
|++++..|++++.+.++.||++|+++||+++|+.||.|||.+++||+++.||++++|+|+.+... |+..+|..+|++|+
T Consensus 77 l~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~ 156 (215)
T cd07632 77 LNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQH 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988555433 24457999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTY 223 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~-~~~~~~~~l~~~ 223 (760)
++|||||++||.||.||+|+||++|++||++|.+|||+||+++. .++.|+..+...
T Consensus 157 ~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~~~~~ 213 (215)
T cd07632 157 LSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSSVSDM 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999998 688888877653
No 17
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-36 Score=310.83 Aligned_cols=210 Identities=37% Similarity=0.614 Sum_probs=183.1
Q ss_pred CCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHHHHHHhccccC
Q 046849 483 IPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYCNSIWEGLLLL 562 (760)
Q Consensus 483 ~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~ 562 (760)
....+.|+|||+++|.|||+|-|+|+|.+|..+||+||.|||.||+|.-. .|+|+.|++...+.|..+|+|||+.+-+
T Consensus 5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s--~W~pt~l~~V~tLn~~gaNsIWEh~Lld 82 (669)
T KOG0818|consen 5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHT--PWPPTLLQMVETLNNNGANSIWEHSLLD 82 (669)
T ss_pred chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccC--CCCHHHHHHHHHHHhcCcchhhhhhccC
Confidence 34567899999999999999999999999999999999999999999988 7999999999999999999999999988
Q ss_pred ccccccCCCCCCCCcCCCCCCCcHH-HHHHHHHHHHhhhhhhhcCCCCc-----cccchh-hhHHHHhcCHHHHHHHHHh
Q 046849 563 KDREVDKSNTTIPSVRKPCSKDVFH-YKEQYINAKYVEKLLVIRDTSDA-----KSRTTS-IWEAVKTQNLQEVYRLIVT 635 (760)
Q Consensus 563 ~~~~~~~~~~~~~~~~kp~~~~~~~-~re~fI~~KY~~k~Fv~~~~~~~-----~~~~~~-L~~A~~~~~~~~v~~ll~~ 635 (760)
+.++.. ++.||.+.++.+ .|++||++||+.-.|+.+.+..+ ..++.+ ||..++.|+++...+||..
T Consensus 83 ~st~~s-------g~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l 155 (669)
T KOG0818|consen 83 PATIMS-------GRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL 155 (669)
T ss_pred chhhhc-------ccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc
Confidence 765543 468999999886 89999999999999998655433 334554 9999999999999999999
Q ss_pred cCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHH
Q 046849 636 SDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELL 715 (760)
Q Consensus 636 g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lL 715 (760)
| ++ +|.... ..|.||||.||..|+.-.+++|
T Consensus 156 G-A~-~N~~hp-----------------------------------------------ekg~TpLHvAAk~Gq~~Q~ElL 186 (669)
T KOG0818|consen 156 G-AQ-ANFFHP-----------------------------------------------EKGNTPLHVAAKAGQILQAELL 186 (669)
T ss_pred c-cc-cCCCCc-----------------------------------------------ccCCchhHHHHhccchhhhhHH
Confidence 6 55 553221 4699999999999999999999
Q ss_pred HHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 716 IQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 716 L~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+-+|||+++ .|..|.||+.||...|| -++.+-|++
T Consensus 187 ~vYGAD~~a------~d~~GmtP~~~AR~~gH---~~laeRl~e 221 (669)
T KOG0818|consen 187 AVYGADPGA------QDSSGMTPVDYARQGGH---HELAERLVE 221 (669)
T ss_pred hhccCCCCC------CCCCCCcHHHHHHhcCc---hHHHHHHHH
Confidence 999999888 99999999999999999 666666554
No 18
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-36 Score=302.17 Aligned_cols=118 Identities=42% Similarity=0.773 Sum_probs=110.7
Q ss_pred cCchHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchH
Q 046849 471 NKSDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNA 550 (760)
Q Consensus 471 ~~~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~ 550 (760)
.+++..|..|++.|+|+.|||||+++|+|||+|+|||||++|+||||+||||||||+||+|| .|++++|+.|+..||.
T Consensus 10 ~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD--~W~~eqv~~m~~~GN~ 87 (287)
T KOG0703|consen 10 ERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLD--EWTDEQVDFMISMGNA 87 (287)
T ss_pred chHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeecc--ccCHHHHHHHHHHcch
Confidence 56788999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcC
Q 046849 551 YCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRD 606 (760)
Q Consensus 551 ~~n~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~ 606 (760)
.||++||+.+|+. ..+|.+++ .+|.|||.||+.++|+.+.
T Consensus 88 ~an~~~ea~~p~~-------------~~~p~~d~---~~e~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 88 KANSYYEAKLPDP-------------FRRPGPDD---LVEQFIRDKYERKKFLDPE 127 (287)
T ss_pred hhhhhccccCCcc-------------ccCCChHH---HHHHHHHHHHhhhhhccch
Confidence 9999999999883 56776554 7999999999999999975
No 19
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=100.00 E-value=3e-34 Score=271.82 Aligned_cols=204 Identities=21% Similarity=0.381 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCC--CCCCccccchhHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGH--DDPVSVSIGGPVISKFISAFRELAT 91 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~--~d~~~~~~~~~~l~~f~~~l~el~~ 91 (760)
|.+|..+|+.++.++..|+|++|.|+.++++...+..+...|+++|+.+|... .|+.. + +.+|.+|+..++|+..
T Consensus 1 r~tv~~~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~--i-~~a~~kfs~~~~El~~ 77 (215)
T cd07641 1 RNTVNVLEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPD--L-GTAFVKFSTLTKELST 77 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchh--H-HHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999997777777899999999999754 33322 2 4789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhc--CCChhhHH------HHHHHHHHH
Q 046849 92 YKELLRSQVEHVLINRLTEFLTVDLHDAK-ESRRRFDKSIHAYDQAREKFVSLKK--NTRDDIVA------ELEEDLQNS 162 (760)
Q Consensus 92 ~~~~l~~~~~~~~~~pL~~f~~~~l~~~k-e~rk~fek~~~~Yd~al~ky~s~~k--~k~~~~~~------e~~~~l~~~ 162 (760)
++..|++++++.+..||++|+|+||+.+| |.||.|||++++||+++.|..+.+| .++.+..+ |++++|...
T Consensus 78 ~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~ 157 (215)
T cd07641 78 LLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKE 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchhHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999999999999888 44444333 899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 163 KSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 163 Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
|++|++.+|||+.+|++++.|+++++|+.+++|||||.+||++|+++++++.||++++
T Consensus 158 Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k~l 215 (215)
T cd07641 158 RRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999864
No 20
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=100.00 E-value=6.2e-33 Score=273.21 Aligned_cols=206 Identities=23% Similarity=0.376 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYK 93 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~ 93 (760)
|.+|..+|+.++.++..|+|+.|.|+.|+++...++.+...|+++|.+|+++..+.....+ +.+|.+|+..++|+.+++
T Consensus 1 r~~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i-~~~l~kF~~~l~El~~~~ 79 (215)
T cd07604 1 RNTVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDL-GAAFLKFSVFTKELAALF 79 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHH-HHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999888899999999999999976543322233 367999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCC-------Chhh-HHHHHHHHHHHHH
Q 046849 94 ELLRSQVEHVLINRLTEFLTVDLHDAK-ESRRRFDKSIHAYDQAREKFVSLKKNT-------RDDI-VAELEEDLQNSKS 164 (760)
Q Consensus 94 ~~l~~~~~~~~~~pL~~f~~~~l~~~k-e~rk~fek~~~~Yd~al~ky~s~~k~k-------~~~~-~~e~~~~l~~~Rk 164 (760)
..|++++++.++.||++|++++|+.++ +.||+|||++++||.+.++..+.+++. +++. ..|++++|..+|+
T Consensus 80 ~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~~l~~~R~ 159 (215)
T cd07604 80 KNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAEEMEKERR 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999998 999999999999999987765554431 1222 2578999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 165 AFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 165 ~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
.|++++||||.+|+.++.+++++||+++++||+||++||++|++++++++||+++|
T Consensus 160 ~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~~L 215 (215)
T cd07604 160 MFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999864
No 21
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=7.8e-34 Score=254.76 Aligned_cols=114 Identities=47% Similarity=0.878 Sum_probs=96.1
Q ss_pred HHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHHHH
Q 046849 475 SVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYCNS 554 (760)
Q Consensus 475 ~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~n~ 554 (760)
+.++.|++.|+|+.|||||+++|+|||+|+|||||+.|||+||+||+|+|+||||+|| .|++++|+.|+.+||..+|+
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d--~w~~~ev~~~~~~GN~~~n~ 79 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMD--NWSPEEVQRMREGGNKRANS 79 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS-----HHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccC--CCCHHHHHHHHHHChHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhh
Q 046849 555 IWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVI 604 (760)
Q Consensus 555 ~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~ 604 (760)
+||+..++ ..+|.+.+..+.+++||+.||+++.|+.
T Consensus 80 ~~e~~~~~--------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~ 115 (116)
T PF01412_consen 80 IWEANSPP--------------PKKPPPSSDQEKREQFIRAKYVEKAFIS 115 (116)
T ss_dssp HHTTTSTT--------------TTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred HHHcCCCC--------------CCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence 99999333 3567778888999999999999999975
No 22
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=100.00 E-value=1.5e-31 Score=255.77 Aligned_cols=203 Identities=20% Similarity=0.362 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC---CCCCCccccchhHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG---HDDPVSVSIGGPVISKFISAFRELA 90 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~---~~d~~~~~~~~~~l~~f~~~l~el~ 90 (760)
|.+|..+|+.++..+..|.++.|.+|.++++...+..+...|+++|+++|+. .+|+.. +.+|.+|+..++|+.
T Consensus 1 ~~~~~~~ee~l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~----~~~l~kf~~~~~El~ 76 (215)
T cd07642 1 RNTVVAIEEALDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDL----GSAFLKFSVFTKELT 76 (215)
T ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHH----HHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999777777789999999999974 344432 579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcC-CChhhH-------HHHHHHHHH
Q 046849 91 TYKELLRSQVEHVLINRLTEFLTVDLHDAK-ESRRRFDKSIHAYDQAREKFVSLKKN-TRDDIV-------AELEEDLQN 161 (760)
Q Consensus 91 ~~~~~l~~~~~~~~~~pL~~f~~~~l~~~k-e~rk~fek~~~~Yd~al~ky~s~~k~-k~~~~~-------~e~~~~l~~ 161 (760)
.++..|++++++.|..||++|+++||+.+| |.||.|||.+++||+++.|..+.+++ .++..+ .|++++|..
T Consensus 77 ~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~ 156 (215)
T cd07642 77 ALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEK 156 (215)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHH
Confidence 999999999999999999999999999998 99999999999999999988877762 233333 688899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 162 SKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 162 ~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
+|++|++.++||+.+|+.++.++++++|+.+++|++||.+||++|++++++++||++++
T Consensus 157 ~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~l 215 (215)
T cd07642 157 ERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEKL 215 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 23
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=100.00 E-value=1.4e-31 Score=249.04 Aligned_cols=206 Identities=17% Similarity=0.300 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYK 93 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~ 93 (760)
|.++..+|+.++..+..|.++.|.+|.++.+...+...+..|+++|+.||+.........+ ++.+-+|+...+|+....
T Consensus 1 r~tv~~lee~le~d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~-~t~fl~~av~tkel~al~ 79 (213)
T cd07640 1 RSTAAALEESLEGDQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHEL-STGFLNLAVFTREVTALF 79 (213)
T ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHH-HHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988667777788999999999976543333444 378999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCC-hh-----hHHHHHHHHHHHHHHH
Q 046849 94 ELLRSQVEHVLINRLTEFLTVDLHDAK-ESRRRFDKSIHAYDQAREKFVSLKKNTR-DD-----IVAELEEDLQNSKSAF 166 (760)
Q Consensus 94 ~~l~~~~~~~~~~pL~~f~~~~l~~~k-e~rk~fek~~~~Yd~al~ky~s~~k~k~-~~-----~~~e~~~~l~~~Rk~f 166 (760)
..|++++++.++.||++|+|++|+.+| +.||.|||++++||+++.|..+.+|.+. .. ...|++++|...|++|
T Consensus 80 k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~F 159 (213)
T cd07640 80 KNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNF 159 (213)
T ss_pred HHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999998887665 12 3578999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 167 EKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 167 ~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
++.+|||+.+|+++|.++++++|+.|++|+|||.+||++|+++++++.||++++
T Consensus 160 ql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik~l 213 (213)
T cd07640 160 QLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIEKL 213 (213)
T ss_pred HHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 999999999999999999999999999999999999999999999999999864
No 24
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=99.98 E-value=7.8e-33 Score=246.40 Aligned_cols=110 Identities=55% Similarity=0.906 Sum_probs=100.3
Q ss_pred CCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHHHHHHhccccCc
Q 046849 484 PGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYCNSIWEGLLLLK 563 (760)
Q Consensus 484 ~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~ 563 (760)
|+|+.|||||+++|+|+|+|+|||||+.|||+||+||+|||+||||+|| .|++++|++|+.+||..+|++||+.+++.
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md--~w~~~~i~~~~~~GN~~~n~~~e~~~~~~ 78 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TWTEEELRLLQKGGNENANSIWESNLDDF 78 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccC--CCCHHHHHHHHHhhhHHHHHHHHhhCCcc
Confidence 6899999999999999999999999999999999999999999999999 79999999999999999999999999873
Q ss_pred cccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcCCC
Q 046849 564 DREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRDTS 608 (760)
Q Consensus 564 ~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~ 608 (760)
..+|.+.+....+++||+.||++++|+.+...
T Consensus 79 -------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~~ 110 (112)
T smart00105 79 -------------SLKPPDSDDQQKYESFIAAKYEEKLFVPPESA 110 (112)
T ss_pred -------------ccCCCCCchHHHHHHHHHHHHHhhhccccccC
Confidence 23444455678999999999999999877654
No 25
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=2.9e-29 Score=246.22 Aligned_cols=210 Identities=13% Similarity=0.176 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH--hhCCCCCCCccccchhHHHHHHHHHHHHHHH
Q 046849 15 KQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEA--FGGGHDDPVSVSIGGPVISKFISAFRELATY 92 (760)
Q Consensus 15 a~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~--~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~ 92 (760)
|+++||..||+.+|+||+++++.+++++.++.++......|...+.| +.++...++.|+ +.+|.+|++++++++..
T Consensus 1 As~nhf~~Qi~~iE~Wl~~~~~~~~k~~~~~~~~e~~~nsfl~~~~p~~~~s~~vidqdYT--~~al~~f~~~l~e~~~~ 78 (214)
T cd07609 1 ASVNHFDDQVDAIEKWLDGYVSSTKKLYSSLDELERVINSFLSHLLPPLLVSGGVIDQDYT--PLALKRFGDGLKDFWGG 78 (214)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhCchhH--HHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999889999999987 444444455677 57999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFN 172 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asld 172 (760)
....+.+.+..+++||+.|++++|++|||.||+||++|++||++++||++++|+|+|+.++|++.+|+++|++|.++|||
T Consensus 79 ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K~p~~l~Eda~qL~e~Rk~Y~~aSLD 158 (214)
T cd07609 79 VLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTKEPSSLREDAFQLFEARKAYLKASLD 158 (214)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhhhhhHHHHHHHHHHHHHHHHHH
Confidence 77777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Q 046849 173 LVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYVHQVLTYAQQ 226 (760)
Q Consensus 173 yv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~-~~~~~~~~l~~~~~~ 226 (760)
||.+|++++...+.-+|+.+.+........+......+. .+..++++++.|.++
T Consensus 159 yv~qi~~lq~~lDkllv~~~~~~wr~~~~~~~~~~~~~~~~~~~~~~ri~~W~~~ 213 (214)
T cd07609 159 LVIAIPQLRLTLDKLLVDIITDLWREKKRTHDDSGSKFDPKWGEEMERIRGWSEE 213 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccccHHHHHHHHHHHHHHhc
Confidence 999999999999977777776644433333333333333 677788888888753
No 26
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=9.2e-31 Score=285.25 Aligned_cols=272 Identities=28% Similarity=0.462 Sum_probs=223.8
Q ss_pred CCCcceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCC
Q 046849 289 TGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNED 368 (760)
Q Consensus 289 ~~~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (760)
.+..++.+.|||.-|+ .|-.-|+.-..+.+..|++....+.|.
T Consensus 187 ~pp~pP~raG~lelrg------~kak~f~~vsp~~vqL~knlq~f~lgi------------------------------- 229 (1186)
T KOG1117|consen 187 PPPVPPPRAGWLELRG------FKAKLFVAVSPERVQLYKNLQSFPLGI------------------------------- 229 (1186)
T ss_pred CCCCCCCCccchhccc------cccceeEEecCceeeeecccccccCCc-------------------------------
Confidence 3345578899999885 333344443488899999988776651
Q ss_pred ccccccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCC
Q 046849 369 SLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLNSDLLQQLRPSAKHIDGND 448 (760)
Q Consensus 369 ~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~~~ 448 (760)
....|.+..|++++ .++ ..|++.||-|.|-|.|+++.++..|+.|++.+|+..++.
T Consensus 230 --git~I~m~~~nvk~----vdr-~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd----------------- 285 (1186)
T KOG1117|consen 230 --GITFIYMEVSNVKE----VDR-RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSD----------------- 285 (1186)
T ss_pred --eeEEEecccccccc----ccc-ceeccCCceeeeeeeeccchhhhhhhhccCcccccccCh-----------------
Confidence 13467778888876 234 569999999999999999999999999999888754432
Q ss_pred CCCCCCCCCCCCCCccchhhhccCchHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeE
Q 046849 449 PFSTRDVPSLSSHCSLEDEVKANKSDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRS 528 (760)
Q Consensus 449 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s 528 (760)
......+.....|..|||||++.|+|||+|++|+||..|+|-||+||.-+|||||
T Consensus 286 -------------------------~evaeriW~ne~nr~cadC~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrs 340 (1186)
T KOG1117|consen 286 -------------------------YEVAERIWLNEENRECADCGSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRS 340 (1186)
T ss_pred -------------------------HHHHHHHHhccccccccccCCCCCcccccccceEEcccCCCccccCCCccccccc
Confidence 2233566778899999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHhhchHHHHHHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcCCC
Q 046849 529 LTLDVKVWEPTILDLFGSLGNAYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRDTS 608 (760)
Q Consensus 529 ~~ld~~~w~~~~~~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~ 608 (760)
++||++.|+.+.++++..+||.++|++|-.++++.+ ...++++...|..||..||.+..|....+.
T Consensus 341 lkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e--------------~lh~dssp~~r~~fi~~Kykeg~fRk~~~~ 406 (1186)
T KOG1117|consen 341 LKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNE--------------HLHPDSSPSTRRQFIKEKYKEGKFRKEHPV 406 (1186)
T ss_pred cccCcccccchhhhhheeecCcccccccccCCCCcc--------------ccCCCCCcchhhhHHHHHhhcccccccccc
Confidence 999999999999999999999999999999999854 334556667899999999999999988887
Q ss_pred Cc-cccchh-hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccc
Q 046849 609 DA-KSRTTS-IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQY 662 (760)
Q Consensus 609 ~~-~~~~~~-L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~ 662 (760)
.. .+.+.+ |+.||..-++.....+|..| ++ ++....|..-.||+-.|-..|+
T Consensus 407 ~~~~sel~kalcaaV~~pdl~etma~l~sg-a~-v~~f~gd~~~~tp~~~a~~aGq 460 (1186)
T KOG1117|consen 407 EICSSELPKALCAAVNVPDLLETMALLFSG-AD-VMCFTGDPVHSTPYLLAKKAGQ 460 (1186)
T ss_pred ccccccCChhheeeeeCCchhhHHHHhhcc-cc-ceeecCCCCCCCCcchhhcccc
Confidence 66 445555 99999999998888888885 66 7887788888889888877774
No 27
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.96 E-value=2.8e-30 Score=266.34 Aligned_cols=119 Identities=41% Similarity=0.685 Sum_probs=106.6
Q ss_pred chHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHH
Q 046849 473 SDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYC 552 (760)
Q Consensus 473 ~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~ 552 (760)
....+..|+..++|+.|||||+++|+|+|+|||||||++||||||+||||||+||||+|| .|++++|.+|..+||..|
T Consensus 7 ~~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD--~wt~~~l~~m~~gGN~~a 84 (319)
T COG5347 7 DRKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWTEEELRRMEVGGNSNA 84 (319)
T ss_pred HHHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecc--cCCHHHHHHHHHhcchhh
Confidence 356788899999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhc
Q 046849 553 NSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIR 605 (760)
Q Consensus 553 n~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~ 605 (760)
|.+||...-.. ...++........+++||+.||..+.|+..
T Consensus 85 ~~~~e~~~~~~------------~~~~~k~~yd~~v~~~y~~~ky~~~~~~~~ 125 (319)
T COG5347 85 NRFYEKNLLDQ------------LLLPIKAKYDSSVAKKYIRKKYELKKFIDD 125 (319)
T ss_pred hhHhccCCCcc------------cccccccccCHHHHHHHHHHHHHhhhcccc
Confidence 99999986551 113344555667899999999999999986
No 28
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.95 E-value=2e-28 Score=259.29 Aligned_cols=123 Identities=18% Similarity=0.400 Sum_probs=108.6
Q ss_pred ccCchHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhch
Q 046849 470 ANKSDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGN 549 (760)
Q Consensus 470 ~~~~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN 549 (760)
.++++++|+.|++.|+|+.|+|||+.+|.|||+|+|||||++||||||+|| +|||||+|| .|++++|++|+.+||
T Consensus 7 qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLD--kWT~EEVe~Mk~gGN 81 (648)
T PLN03119 7 EERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMS--KFTSKEVEVLQNGGN 81 (648)
T ss_pred HHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccC--CCCHHHHHHHHHhch
Confidence 356789999999999999999999999999999999999999999999998 499999999 899999999999999
Q ss_pred HHHHHHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcCCCCc
Q 046849 550 AYCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRDTSDA 610 (760)
Q Consensus 550 ~~~n~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~~~ 610 (760)
.++|++||+++++. ..++......+.+++||+.||++|+|+.....+.
T Consensus 82 ~~AN~iyeanw~~~-------------~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~d~ 129 (648)
T PLN03119 82 QRAREIYLKNWDHQ-------------RQRLPENSNAERVREFIKNVYVQKKYAGANDADK 129 (648)
T ss_pred HHHHHHHHhhcccc-------------cCCCCCCccHHHHHHHHHHHHhhhhccCcCCCCC
Confidence 99999999999762 1233334455677899999999999998876544
No 29
>PLN03131 hypothetical protein; Provisional
Probab=99.95 E-value=5.3e-28 Score=258.11 Aligned_cols=121 Identities=20% Similarity=0.410 Sum_probs=107.1
Q ss_pred cCchHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchH
Q 046849 471 NKSDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNA 550 (760)
Q Consensus 471 ~~~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~ 550 (760)
++++++|+.|++.|+|+.|+|||+++|.|||+|+|||||++||||||+|| +|||||+|| .|++++|+.|+.+||.
T Consensus 8 ErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD--~WtdeEV~~Mk~gGN~ 82 (705)
T PLN03131 8 ERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMS--KFTSQDVEALQNGGNQ 82 (705)
T ss_pred HHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCC--CCCHHHHHHHHHhccH
Confidence 56788999999999999999999999999999999999999999999997 499999999 8999999999999999
Q ss_pred HHHHHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcCCCC
Q 046849 551 YCNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRDTSD 609 (760)
Q Consensus 551 ~~n~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~~ 609 (760)
++|++||++++.. ..++...+..+.+++||+.||++|+|+.+...+
T Consensus 83 ~AN~iyeanwd~~-------------r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d 128 (705)
T PLN03131 83 RAREIYLKDWDQQ-------------RQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHD 128 (705)
T ss_pred HHHHHHHhhcccc-------------cCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCC
Confidence 9999999998762 122223445567899999999999999887553
No 30
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.92 E-value=2.9e-25 Score=223.81 Aligned_cols=120 Identities=34% Similarity=0.493 Sum_probs=97.5
Q ss_pred hHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHHH
Q 046849 474 DSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYCN 553 (760)
Q Consensus 474 ~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~n 553 (760)
..+++.|+..|+|+.|+|||+++|+|+|+|+|||||+.|||+||+||+|||+|||++|| .|++++|++|+.+||.++|
T Consensus 10 ~~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD--~Ws~eqL~~Mk~GGN~rA~ 87 (395)
T PLN03114 10 ISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMIYGGNNRAQ 87 (395)
T ss_pred HHHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCC--CCCHHHHHHHHHhcCHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcC
Q 046849 554 SIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRD 606 (760)
Q Consensus 554 ~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~ 606 (760)
.+|+..-.... ...+-.-.+....+-+.+..+++.+.+....
T Consensus 88 ~fF~qhG~~~~-----------~~~~~KY~S~aA~~Yre~L~keVa~~~a~~~ 129 (395)
T PLN03114 88 VFFKQYGWSDG-----------GKTEAKYTSRAADLYKQILAKEVAKSKAEEE 129 (395)
T ss_pred HHHHHcCCCCC-----------CCcccccCCHHHHHHHHHHHHHHHHhhhccc
Confidence 99986422100 0112222344445555577777777776433
No 31
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=3.9e-25 Score=221.05 Aligned_cols=85 Identities=41% Similarity=0.760 Sum_probs=78.7
Q ss_pred chHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHH
Q 046849 473 SDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYC 552 (760)
Q Consensus 473 ~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~ 552 (760)
.+..|..++...+|+.|+||++++|+|||++||||||.+|||+||+||||||+||||||| .|.+.+|+.|+.+||.++
T Consensus 6 trr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD--~wkeiel~kMeaGGN~~~ 83 (386)
T KOG0704|consen 6 TRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMD--KWKEIELKKMEAGGNERF 83 (386)
T ss_pred HHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecc--cccHHHHHHHHhccchhH
Confidence 455666666667999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHhcc
Q 046849 553 NSIWEGL 559 (760)
Q Consensus 553 n~~~e~~ 559 (760)
+++++..
T Consensus 84 ~eFL~s~ 90 (386)
T KOG0704|consen 84 REFLSSQ 90 (386)
T ss_pred HHHHhhC
Confidence 9998764
No 32
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.91 E-value=4.4e-25 Score=228.64 Aligned_cols=87 Identities=44% Similarity=0.717 Sum_probs=82.9
Q ss_pred chHHHHHHhcCCCCCccccCCCCCCCeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHHH
Q 046849 473 SDSVSAILRQIPGNDLCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAYC 552 (760)
Q Consensus 473 ~~~~~~~~~~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~~ 552 (760)
...+++.|+..+.|+.|+|||+++|+|+|++|||||||+||++||+|||||++|||..|| +|+..+|+.|+.+||.+|
T Consensus 10 ~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLD--sWs~~qLR~M~~GGN~nA 87 (454)
T KOG0706|consen 10 IQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLD--SWSWEQLRRMQVGGNANA 87 (454)
T ss_pred HHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccc--cCCHHHHhHhhhcCchhH
Confidence 467899999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHhcccc
Q 046849 553 NSIWEGLLL 561 (760)
Q Consensus 553 n~~~e~~~~ 561 (760)
+.+++..-.
T Consensus 88 ~~FFkqhg~ 96 (454)
T KOG0706|consen 88 RVFFKQHGC 96 (454)
T ss_pred HHHHHHcCC
Confidence 999987543
No 33
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.80 E-value=1.4e-17 Score=165.20 Aligned_cols=191 Identities=29% Similarity=0.498 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
+..+++++++|++.++.++++..+.......|+++|..++..........+ +.++.+|+..++++..++..+...+...
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 80 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDL-GEALEKFGKIQKELEEFRDQLEQKLENK 80 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999865544322122 4789999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 104 LINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNT-RDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEA 182 (760)
Q Consensus 104 ~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k-~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~ 182 (760)
++.||..|++.+++.+++.+|+|++.+.+||++++|+.++.+++ ++..+.+++.++..+|..|...+.+|+..|+.+..
T Consensus 81 v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~ 160 (194)
T cd07307 81 VIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEE 160 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765 67778899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 183 KKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 183 ~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
.+..+++..|..|+.+|..||+++++.+.++.|
T Consensus 161 ~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~ 193 (194)
T cd07307 161 KRKELFLSLLLSFIEAQSEFFKEVLKILEQLLP 193 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 999999999999999999999999999887765
No 34
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.1e-20 Score=167.88 Aligned_cols=110 Identities=27% Similarity=0.305 Sum_probs=73.3
Q ss_pred hhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccC-cCCCCCCCCCC
Q 046849 616 SIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQR-IKDSNDPGNCL 694 (760)
Q Consensus 616 ~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~-gadvn~~~~~~ 694 (760)
.||.|+.-|..+.+..|+... + ++....|..|+||||+||..|..+ +++.|+.+ |+|+|+.+ .
T Consensus 41 ~LHwa~S~g~~eiv~fLlsq~--n-v~~ddkDdaGWtPlhia~s~g~~e-----------vVk~Ll~r~~advna~t--n 104 (226)
T KOG4412|consen 41 PLHWACSFGHVEIVYFLLSQP--N-VKPDDKDDAGWTPLHIAASNGNDE-----------VVKELLNRSGADVNATT--N 104 (226)
T ss_pred eeeeeeecCchhHHHHHHhcC--C-CCCCCccccCCchhhhhhhcCcHH-----------HHHHHhcCCCCCcceec--C
Confidence 388888888877777777532 2 445556777888888888887543 33344555 77777777 7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCC
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGA 747 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~ 747 (760)
.|.|||||||..|..+++++|+.+||.|++ +|+.|.||||-|+..|.
T Consensus 105 ~G~T~LHyAagK~r~eIaqlLle~ga~i~~------kD~~~qtplHRAAavGk 151 (226)
T KOG4412|consen 105 GGQTCLHYAAGKGRLEIAQLLLEKGALIRI------KDKQGQTPLHRAAAVGK 151 (226)
T ss_pred CCcceehhhhcCChhhHHHHHHhcCCCCcc------cccccCchhHHHHhccc
Confidence 777777777777777777777777777776 44444444444444444
No 35
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.78 E-value=8.1e-19 Score=153.89 Aligned_cols=95 Identities=22% Similarity=0.391 Sum_probs=76.5
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
++|+|||.|+++.. +.|+||||||+ ++.|+||+++++.. +.+
T Consensus 2 v~k~G~L~Kkg~~~-k~WkkRwfvL~-~~~L~yyk~~~~~~------------------------------------~~~ 43 (100)
T cd01233 2 VSKKGYLNFPEETN-SGWTRRFVVVR-RPYLHIYRSDKDPV------------------------------------ERG 43 (100)
T ss_pred cceeEEEEeeCCCC-CCcEEEEEEEE-CCEEEEEccCCCcc------------------------------------Eee
Confidence 57899999998765 69999999999 78999998765411 145
Q ss_pred cccccCceeccCCCCC---CCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDT---DLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~---~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.|+|..+.+....+.. .+++||.|.+++|+|+|+|+|++|+.+||.+|+..++
T Consensus 44 ~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 44 VINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred EEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 6778777776543221 3679999999999999999999999999999987653
No 36
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.78 E-value=1e-18 Score=153.80 Aligned_cols=93 Identities=20% Similarity=0.445 Sum_probs=70.6
Q ss_pred EEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccc
Q 046849 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGI-KSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRT 374 (760)
Q Consensus 296 k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (760)
|+|||.|+++...++|+||||||+ ++.|+||+++.+ .+. +.
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~-~~~L~Yyk~~~d~~~~-------------------------------------G~ 42 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLD-DRRLMYFKDPLDAFAK-------------------------------------GE 42 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEe-CCEEEEECCCCCcCcC-------------------------------------cE
Confidence 689999998765578999999998 788999987654 233 34
Q ss_pred ccccCc----eeccC-CC--CCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 375 VDLRTS----AIKMD-GE--DTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 375 i~l~~~----~v~~~-~~--~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
|+|..+ .|... ++ ..++.+||+|.+|+|+|+|+|+|++||++||++|+.++.
T Consensus 43 I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 43 VFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 444332 23211 11 223346999999999999999999999999999999875
No 37
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.77 E-value=2.1e-18 Score=148.36 Aligned_cols=93 Identities=23% Similarity=0.389 Sum_probs=72.4
Q ss_pred EEEEEEeeCCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 296 KQGYLLKRSSN--LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 296 k~G~L~K~~~~--~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
.+|||.|+++. ..++|+||||+|+ ++.|+||+...... ...+
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~-~~~L~y~K~~~~~~-----------------------------------~~~g 45 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLS-GAQLLFQKGKSKDD-----------------------------------PDDC 45 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEe-CCEEEEEeccCccC-----------------------------------CCCc
Confidence 38999999885 5679999999999 78888888654311 0135
Q ss_pred cccccCceeccCCCCC----CCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDT----DLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~----~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.|+|..|.....+++. +++|||+|.+|+|+|+|+|+|++|+++||++|+.|
T Consensus 46 ~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 46 SIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred eEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 7788776644433322 23699999999999999999999999999999876
No 38
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.8e-18 Score=156.62 Aligned_cols=122 Identities=25% Similarity=0.259 Sum_probs=108.6
Q ss_pred cchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCC
Q 046849 613 RTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGN 692 (760)
Q Consensus 613 ~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~ 692 (760)
+-..||.|+..|+.+.|..|+...++| +|..+ ..|.|+||+|+..| ..++..+||++|+.|+++|
T Consensus 72 GWtPlhia~s~g~~evVk~Ll~r~~ad-vna~t--n~G~T~LHyAagK~-----------r~eIaqlLle~ga~i~~kD- 136 (226)
T KOG4412|consen 72 GWTPLHIAASNGNDEVVKELLNRSGAD-VNATT--NGGQTCLHYAAGKG-----------RLEIAQLLLEKGALIRIKD- 136 (226)
T ss_pred CCchhhhhhhcCcHHHHHHHhcCCCCC-cceec--CCCcceehhhhcCC-----------hhhHHHHHHhcCCCCcccc-
Confidence 445599999999999999999987888 88754 46999999999886 4556677899999999999
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 693 CLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 693 ~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|.||||-||..|.+.++++|+..||.+|. .|+.|+||||.|...|| .++..+|+.
T Consensus 137 -~~~qtplHRAAavGklkvie~Li~~~a~~n~------qDk~G~TpL~~al~e~~---~d~a~lLV~ 193 (226)
T KOG4412|consen 137 -KQGQTPLHRAAAVGKLKVIEYLISQGAPLNT------QDKYGFTPLHHALAEGH---PDVAVLLVR 193 (226)
T ss_pred -cccCchhHHHHhccchhhHHHHHhcCCCCCc------ccccCccHHHHHHhccC---chHHHHHHH
Confidence 9999999999999999999999999999988 99999999999999999 787777764
No 39
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.74 E-value=9.5e-18 Score=145.94 Aligned_cols=92 Identities=26% Similarity=0.433 Sum_probs=71.5
Q ss_pred EEEEEEeeCCC--------CCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCC
Q 046849 296 KQGYLLKRSSN--------LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNE 367 (760)
Q Consensus 296 k~G~L~K~~~~--------~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (760)
++|||+|.+++ ..++|+||||||+++|+|+||++....
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~---------------------------------- 46 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT---------------------------------- 46 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC----------------------------------
Confidence 47999999765 247999999999878999998754210
Q ss_pred CccccccccccCceeccCCCC-CCCCceEEEEecCceeEEEcCCHHHHHHHHHHHH
Q 046849 368 DSLNCRTVDLRTSAIKMDGED-TDLRLCFRIISPVKTYTLQAETEADRMDWTSKIT 422 (760)
Q Consensus 368 ~~~~~~~i~l~~~~v~~~~~~-~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~ 422 (760)
..+.+.|+|..|.....+++ .++.+||+|++|+|+|+|.|+|++|+++||.+|.
T Consensus 47 -~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 47 -TLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred -cccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 12245788877765543332 3456999999999999999999999999999985
No 40
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.73 E-value=1.7e-17 Score=143.86 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=72.7
Q ss_pred EEEEEeeCCC-CCCCceeeEEEEec-CceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccc
Q 046849 297 QGYLLKRSSN-LRGDWKRRFFVLNS-QGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRT 374 (760)
Q Consensus 297 ~G~L~K~~~~-~~~~W~rR~fvl~~-~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (760)
+|||.|+++. ..++|+||||||++ .+.|+||+++.+. .+.+.
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~------------------------------------~p~G~ 45 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDA------------------------------------KPLGR 45 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcc------------------------------------cccce
Confidence 6999999864 46799999999985 3689999876541 12557
Q ss_pred ccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 375 VDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 375 i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
|+|..+++....+ +++++|+|++++|+|+|+|+|++||++||++|+.+
T Consensus 46 I~L~~~~~~~~~~--~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 46 VDLSGAAFTYDPR--EEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred EECCccEEEcCCC--CCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 8888877665332 34789999999999999999999999999999875
No 41
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.73 E-value=1.5e-17 Score=147.30 Aligned_cols=94 Identities=24% Similarity=0.345 Sum_probs=69.6
Q ss_pred eEEEEEEeeCCCC----CCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcc
Q 046849 295 IKQGYLLKRSSNL----RGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSL 370 (760)
Q Consensus 295 ~k~G~L~K~~~~~----~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (760)
+|+|||+||+.+. +++|++|||||+ ++.|+||+++.+.. ..
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~~L~Yyk~~~~~~----------------------------------~~ 45 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLT-KSKLSYYEGDFEKR----------------------------------GS 45 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEc-CCEEEEECCCcccc----------------------------------cC
Confidence 5799999997542 348999999998 88999998765410 11
Q ss_pred ccccccccCceeccC-CCC------CCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHH
Q 046849 371 NCRTVDLRTSAIKMD-GED------TDLRLCFRIISPVKTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 371 ~~~~i~l~~~~v~~~-~~~------~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
+.+.|+|..+..... .+. ..+.+||+|++++++|+++|+|++|+++||++|+.
T Consensus 46 ~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 46 KKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 244566665433211 111 13579999999999999999999999999999985
No 42
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.72 E-value=4.6e-17 Score=139.48 Aligned_cols=88 Identities=26% Similarity=0.421 Sum_probs=71.7
Q ss_pred EEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccccc
Q 046849 297 QGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTVD 376 (760)
Q Consensus 297 ~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 376 (760)
+|||.|+++. .++|++|||||+ +|.|+||+++.+... .+.+.|+
T Consensus 2 ~G~L~K~~~~-~k~Wk~RwFvL~-~g~L~Yyk~~~~~~~----------------------------------~~~G~I~ 45 (91)
T cd01247 2 NGVLSKWTNY-INGWQDRYFVLK-EGNLSYYKSEAEKSH----------------------------------GCRGSIF 45 (91)
T ss_pred ceEEEEeccc-cCCCceEEEEEE-CCEEEEEecCccCcC----------------------------------CCcEEEE
Confidence 7999999864 559999999997 899999998655221 1367899
Q ss_pred ccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHH
Q 046849 377 LRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 377 l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
|..|.+... + .++++|+|.++. ++|+|+|+|++|+++||++|+.
T Consensus 46 L~~~~i~~~--~-~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 46 LKKAIIAAH--E-FDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CcccEEEcC--C-CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 999988753 2 236899997666 9999999999999999999974
No 43
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.71 E-value=3.9e-17 Score=142.66 Aligned_cols=91 Identities=30% Similarity=0.554 Sum_probs=73.5
Q ss_pred EEEEEEeeCCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 296 KQGYLLKRSSN---LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 296 k~G~L~K~~~~---~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
++|||+|+++. ..+.|+||||||. ++.|+||+++.+.. +.
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~-~~~L~yyk~~~~~~------------------------------------~~ 44 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLK-GTTLYWYRSKQDEK------------------------------------AE 44 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEE-CCEEEEECCCCCCc------------------------------------cc
Confidence 58999999743 3458999999999 78999998775421 13
Q ss_pred ccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
+.|.|..+.+... .+..++|||.|.+|+ ++|+|+|+|++|+.+||.+|++|
T Consensus 45 ~~I~L~~~~v~~~-~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 45 GLIFLSGFTIESA-KEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred eEEEccCCEEEEc-hhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 4677877777653 334588999999999 99999999999999999999864
No 44
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.70 E-value=1.2e-17 Score=181.37 Aligned_cols=122 Identities=25% Similarity=0.229 Sum_probs=86.5
Q ss_pred ccchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCC
Q 046849 612 SRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPG 691 (760)
Q Consensus 612 ~~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~ 691 (760)
++..-||.|+.+++++.++.||.+| ++ +|.... ..+.||||+|++.|+ ..++..|+++||||+.+|
T Consensus 77 ~g~tlLHWAAiNNrl~v~r~li~~g-ad-vn~~gG-~l~stPLHWAar~G~-----------~~vv~lLlqhGAdpt~~D 142 (600)
T KOG0509|consen 77 EGVTLLHWAAINNRLDVARYLISHG-AD-VNAIGG-VLGSTPLHWAARNGH-----------ISVVDLLLQHGADPTLKD 142 (600)
T ss_pred CCccceeHHHHcCcHHHHHHHHHcC-CC-ccccCC-CCCCCcchHHHHcCc-----------HHHHHHHHHcCCCCceec
Confidence 3444477777777776666666664 55 666544 356777777777764 335556677777777777
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 692 NCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 692 ~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
.+|-||||+||+.||...|-+||..|+|+|. +|.+|+||||+|+.+|+ ...+++|+
T Consensus 143 --~~G~~~lHla~~~~~~~~vayll~~~~d~d~------~D~~grTpLmwAaykg~---~~~v~~LL 198 (600)
T KOG0509|consen 143 --KQGLTPLHLAAQFGHTALVAYLLSKGADIDL------RDNNGRTPLMWAAYKGF---ALFVRRLL 198 (600)
T ss_pred --CCCCcHHHHHHHhCchHHHHHHHHhcccCCC------cCCCCCCHHHHHHHhcc---cHHHHHHH
Confidence 7777777777777777777777777777666 89999999999999998 55355443
No 45
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.70 E-value=7.6e-17 Score=139.83 Aligned_cols=94 Identities=26% Similarity=0.371 Sum_probs=73.1
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCc-----eEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCC
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQG-----TLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNED 368 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~-----~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (760)
+.|+|||.|+ ++|+||||||+.+. .|.||+++...... .
T Consensus 2 v~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~-------------------------------~ 45 (101)
T cd01257 2 VRKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQK-------------------------------G 45 (101)
T ss_pred ccEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhcccc-------------------------------C
Confidence 6789999998 58999999998431 79999987542210 0
Q ss_pred ccccccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHH
Q 046849 369 SLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 369 ~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
..|.+.|.|..|.......+..++|+|+|.||+++|+|+|+|++|+++||.+|..
T Consensus 46 ~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 46 SAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred CCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 1246688888887543333445579999999999999999999999999999853
No 46
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.68 E-value=2e-16 Score=137.73 Aligned_cols=93 Identities=42% Similarity=0.793 Sum_probs=73.6
Q ss_pred EEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccc
Q 046849 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTV 375 (760)
Q Consensus 296 k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 375 (760)
|+|||.|+++...+.|++|||+|+ ++.|+||+++.... ..+...|
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~~----------------------------------~~~~~~i 45 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDYD----------------------------------NAHVKEI 45 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCcccc----------------------------------cccceEE
Confidence 589999998664568999999998 78888887754310 0113467
Q ss_pred cccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHH
Q 046849 376 DLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 376 ~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
++..|++....+..++++||+|++++++|+|+|+|++|+.+||.||++
T Consensus 46 ~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 46 DLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred eccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 787777776444334789999999999999999999999999999975
No 47
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.66 E-value=5.9e-16 Score=141.93 Aligned_cols=93 Identities=29% Similarity=0.636 Sum_probs=74.2
Q ss_pred eEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccc
Q 046849 295 IKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRT 374 (760)
Q Consensus 295 ~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (760)
.|+|||.|+++.. +.|++|||||. ++.|+||+++.+.. +.+.
T Consensus 1 ~k~G~L~K~~~~~-~~WkkRwfvL~-~~~L~yyk~~~~~~------------------------------------~~g~ 42 (125)
T cd01252 1 DREGWLLKQGGRV-KTWKRRWFILT-DNCLYYFEYTTDKE------------------------------------PRGI 42 (125)
T ss_pred CcEEEEEEeCCCC-CCeEeEEEEEE-CCEEEEEcCCCCCC------------------------------------ceEE
Confidence 3789999998655 58999999998 77899998765321 2456
Q ss_pred ccccCceeccCCCCCCCCceEEEEecC---------------------ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 375 VDLRTSAIKMDGEDTDLRLCFRIISPV---------------------KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 375 i~l~~~~v~~~~~~~~~~~~F~i~~~~---------------------~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
|.|..+.|... ++..+++||+|.+++ ++|+|+|+|++|+.+||.+|+.++.
T Consensus 43 I~L~~~~v~~~-~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 43 IPLENVSIREV-EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred EECCCcEEEEc-ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 77887777653 334678999998866 4789999999999999999998875
No 48
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.66 E-value=6e-17 Score=147.56 Aligned_cols=118 Identities=25% Similarity=0.252 Sum_probs=101.8
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
+..|+..+.+..|.+||... ++.+|. +|..|.||||-|+.+|+.. ++..++..||+++++. ..|
T Consensus 67 ~lwaae~nrl~eV~~lL~e~-an~vNt--rD~D~YTpLHRAaYn~h~d-----------iv~~ll~~gAn~~a~T--~~G 130 (228)
T KOG0512|consen 67 LLWAAEKNRLTEVQRLLSEK-ANHVNT--RDEDEYTPLHRAAYNGHLD-----------IVHELLLSGANKEAKT--NEG 130 (228)
T ss_pred HHHHHhhccHHHHHHHHHhc-cccccc--cccccccHHHHHHhcCchH-----------HHHHHHHccCCccccc--ccC
Confidence 77899999999999999985 554776 7778999999999998654 4445688999999988 899
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
|||||-||..++.+++-+||++|||||+ ......||||+|+...+ |...+++|+
T Consensus 131 WTPLhSAckWnN~~va~~LLqhgaDVnA------~t~g~ltpLhlaa~~rn--~r~t~~~Ll 184 (228)
T KOG0512|consen 131 WTPLHSACKWNNFEVAGRLLQHGADVNA------QTKGLLTPLHLAAGNRN--SRDTLELLL 184 (228)
T ss_pred ccchhhhhcccchhHHHHHHhccCcccc------cccccchhhHHhhcccc--hHHHHHHHh
Confidence 9999999999999999999999999998 88888999999998765 566677765
No 49
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.65 E-value=6.3e-16 Score=136.52 Aligned_cols=92 Identities=28% Similarity=0.507 Sum_probs=68.5
Q ss_pred EEEEEeeCCCCCCCceeeEEEEec-CceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccc
Q 046849 297 QGYLLKRSSNLRGDWKRRFFVLNS-QGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTV 375 (760)
Q Consensus 297 ~G~L~K~~~~~~~~W~rR~fvl~~-~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 375 (760)
+|||.|+++. .+.|+||||||.+ ++.|+||+++.+.. +.+.|
T Consensus 2 ~G~L~K~g~~-~k~WkkRwFvL~~~~~~L~Yy~~~~~~~------------------------------------~~g~I 44 (101)
T cd01235 2 EGYLYKRGAL-LKGWKPRWFVLDPDKHQLRYYDDFEDTA------------------------------------EKGCI 44 (101)
T ss_pred eEEEEEcCCC-CCCccceEEEEECCCCEEEEecCCCCCc------------------------------------cceEE
Confidence 7999999864 4599999999985 35899998765321 13345
Q ss_pred cccCce-eccC------CCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 376 DLRTSA-IKMD------GEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 376 ~l~~~~-v~~~------~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
+|..++ +... +....+.++|.|.++.|+|+|+|+|++|+.+||.+|+++|
T Consensus 45 ~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 45 DLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 555432 2110 1223456889999999999999999999999999999865
No 50
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=6e-16 Score=132.80 Aligned_cols=91 Identities=20% Similarity=0.329 Sum_probs=71.9
Q ss_pred EEEEEEeeCCCCCCCceeeEEEEec---CceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 296 KQGYLLKRSSNLRGDWKRRFFVLNS---QGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 296 k~G~L~K~~~~~~~~W~rR~fvl~~---~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
+.|||.|+++...+.|++|||+|.. ++.|+||+++.... +.
T Consensus 1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~------------------------------------p~ 44 (98)
T cd01245 1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK------------------------------------PI 44 (98)
T ss_pred CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC------------------------------------cc
Confidence 3699999987646799999999972 38999998766522 13
Q ss_pred ccccccCceeccCCCC-CCCCceEEEEecCc--eeEEEcCCHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGED-TDLRLCFRIISPVK--TYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~-~~~~~~F~i~~~~~--~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
+.|++..+.|++..+. .+++|||+|+++.+ +|++.|++ +|+++||++|+.
T Consensus 45 gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 45 GLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 4567777877763332 37889999999986 79999999 999999999974
No 51
>smart00721 BAR BAR domain.
Probab=99.62 E-value=9.3e-14 Score=143.11 Aligned_cols=200 Identities=24% Similarity=0.411 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhchHHHHHHHHHhhCCC--CC--CCccccchhHHHHHHHHHHHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFT---EALGVACSGDSAFADALEAFGGGH--DD--PVSVSIGGPVISKFISAFREL 89 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~---~~~~~~~~~~~~~~~~l~~~~~~~--~d--~~~~~~~~~~l~~f~~~l~el 89 (760)
+..+|.+++.++.++++|+|.++.|+ +++.....+...|+..+..+..+. .. .....+ +.+|..|+.++.++
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 107 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSY-GKALDKLGEALKKL 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHH-HHHHHHHHHHHHHH
Confidence 46788999999999999999999999 888888888889999998874331 11 111122 36889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-h--hhHHHHHHHHHHHHHHH
Q 046849 90 ATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR-D--DIVAELEEDLQNSKSAF 166 (760)
Q Consensus 90 ~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~-~--~~~~e~~~~l~~~Rk~f 166 (760)
...+..+ .++...++.|+.+++..+++.++..++++++...+||++..++.++.++.+ + +.+.++++++..+|..|
T Consensus 108 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~f 186 (239)
T smart00721 108 LQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEF 186 (239)
T ss_pred HhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 9998888 999999999999999999999999999999999999999999988866532 2 26788999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046849 167 EKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVH 218 (760)
Q Consensus 167 ~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~ 218 (760)
.....+++..|..+.......++..+.+|+.+|.+||+++++.+.++.++++
T Consensus 187 e~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 187 EESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888679999999999999999999999999988874
No 52
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.62 E-value=1.9e-15 Score=134.59 Aligned_cols=91 Identities=25% Similarity=0.388 Sum_probs=67.2
Q ss_pred EEEEEeeCCC---CCCCceeeEEEEecCce------EEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCC
Q 046849 297 QGYLLKRSSN---LRGDWKRRFFVLNSQGT------LYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNE 367 (760)
Q Consensus 297 ~G~L~K~~~~---~~~~W~rR~fvl~~~~~------l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (760)
+|||.|+++. ..+.|+||||||+++++ |+||+++....
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k--------------------------------- 48 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK--------------------------------- 48 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------------------------------
Confidence 7999999763 24599999999995554 78998765311
Q ss_pred CccccccccccCceeccC-----CCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHH
Q 046849 368 DSLNCRTVDLRTSAIKMD-----GEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 368 ~~~~~~~i~l~~~~v~~~-----~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
+.+.|+|..|.+... .......|+|.|.++.|+|+|.|+|++||++||.+|+.
T Consensus 49 ---~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 49 ---LEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICK 106 (108)
T ss_pred ---cceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHh
Confidence 234667766554321 11112357899999999999999999999999999975
No 53
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.62 E-value=4.7e-16 Score=169.18 Aligned_cols=141 Identities=21% Similarity=0.189 Sum_probs=112.9
Q ss_pred HHHHHhhhhhhhcCCCCc---cccch--hhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhh
Q 046849 593 INAKYVEKLLVIRDTSDA---KSRTT--SIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDF 667 (760)
Q Consensus 593 I~~KY~~k~Fv~~~~~~~---~~~~~--~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~ 667 (760)
|..+..--+|......+. .-.+. .||.|+++|++..+..|+.+| + ++...|..|.+|||+|+..|+.
T Consensus 87 iNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhG-A---dpt~~D~~G~~~lHla~~~~~~---- 158 (600)
T KOG0509|consen 87 INNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHG-A---DPTLKDKQGLTPLHLAAQFGHT---- 158 (600)
T ss_pred HcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcC-C---CCceecCCCCcHHHHHHHhCch----
Confidence 555555555554443322 11222 399999999998888888886 4 4556889999999999999753
Q ss_pred hhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCC-CCCCcHHHHHHHcC
Q 046849 668 HKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKD-GGGLSSLERAMEMG 746 (760)
Q Consensus 668 ~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d-~~G~TpL~~A~~~g 746 (760)
.++.++|.+|+|+|.+| .+|+||||+||.+|+...+..||+.||+++. +| +.|.||||+|+..|
T Consensus 159 -------~~vayll~~~~d~d~~D--~~grTpLmwAaykg~~~~v~~LL~f~a~~~~------~d~~~g~TpLHwa~~~g 223 (600)
T KOG0509|consen 159 -------ALVAYLLSKGADIDLRD--NNGRTPLMWAAYKGFALFVRRLLKFGASLLL------TDDNHGNTPLHWAVVGG 223 (600)
T ss_pred -------HHHHHHHHhcccCCCcC--CCCCCHHHHHHHhcccHHHHHHHHhcccccc------cccccCCchHHHHHhcC
Confidence 35667899999999999 9999999999999999999999999999987 66 99999999999999
Q ss_pred CCChHHHHHHhhc
Q 046849 747 AITDEELFILLAE 759 (760)
Q Consensus 747 ~~~~~eiv~lL~~ 759 (760)
+ ...+.+|++
T Consensus 224 N---~~~v~Ll~~ 233 (600)
T KOG0509|consen 224 N---LTAVKLLLE 233 (600)
T ss_pred C---cceEehhhh
Confidence 9 666665544
No 54
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.62 E-value=5.6e-16 Score=149.88 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=98.5
Q ss_pred hhhHHHHhcCHHHHHHH---HHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCC
Q 046849 616 SIWEAVKTQNLQEVYRL---IVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGN 692 (760)
Q Consensus 616 ~L~~A~~~~~~~~v~~l---l~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~ 692 (760)
.|+.|++.|++..+.++ |...+.+ ++ ..|..|.||||+|+..|+.. .+.++..|+.+|+++|.++
T Consensus 23 ~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~--~~d~~g~t~Lh~Aa~~g~~~--------~~~~i~~Ll~~Gadin~~d- 90 (166)
T PHA02743 23 TFLRICRTGNIYELMEVAPFISGDGHL-LH--RYDHHGRQCTHMVAWYDRAN--------AVMKIELLVNMGADINARE- 90 (166)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcchh-hh--ccCCCCCcHHHHHHHhCccC--------HHHHHHHHHHcCCCCCCCC-
Confidence 38999999998655543 3333444 44 35678999999999987432 1223456689999999986
Q ss_pred CC-CCChHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 693 CL-QGGSLLHLACQCGNLVMLELLIQ-FGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 693 ~~-~G~TpLh~Aa~~g~~~~v~lLL~-~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
. .|.||||+|+..|+.+++++|+. .|++++. +|..|.||||+|+..|+ .+++++|++
T Consensus 91 -~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~------~d~~g~tpL~~A~~~~~---~~iv~~Ll~ 149 (166)
T PHA02743 91 -LGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA------INYQHETAYHIAYKMRD---RRMMEILRA 149 (166)
T ss_pred -CCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC------cCCCCCCHHHHHHHcCC---HHHHHHHHH
Confidence 4 79999999999999999999995 8999887 99999999999999999 899999874
No 55
>PHA02741 hypothetical protein; Provisional
Probab=99.60 E-value=9.5e-16 Score=148.89 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=101.3
Q ss_pred hhhhHHHHhcCHHHHHHHHHhc-----CCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCC
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTS-----DANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSND 689 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g-----~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~ 689 (760)
..||.|+..|+.+.+..++... +++ ++ ..|..|.||||+|+..|+... ..+++..++++|+++|.
T Consensus 23 t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in--~~d~~g~T~Lh~A~~~g~~~~-------~~~ii~~Ll~~gadin~ 92 (169)
T PHA02741 23 NFFHEAARCGCFDIIARFTPFIRGDCHAAA-LN--ATDDAGQMCIHIAAEKHEAQL-------AAEIIDHLIELGADINA 92 (169)
T ss_pred CHHHHHHHcCCHHHHHHHHHHhccchhhhh-hh--ccCCCCCcHHHHHHHcCChHH-------HHHHHHHHHHcCCCCCC
Confidence 4499999999998888775321 244 44 467789999999999875321 12345566889999999
Q ss_pred CCCCC-CCChHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 690 PGNCL-QGGSLLHLACQCGNLVMLELLIQ-FGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 690 ~~~~~-~G~TpLh~Aa~~g~~~~v~lLL~-~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
++ . .|+||||+|+..++.+++++||. .|++++. +|..|+||||+|+..|+ .+++.+|.+
T Consensus 93 ~~--~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~------~n~~g~tpL~~A~~~~~---~~iv~~L~~ 153 (169)
T PHA02741 93 QE--MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF------CNADNKSPFELAIDNED---VAMMQILRE 153 (169)
T ss_pred CC--cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc------CCCCCCCHHHHHHHCCC---HHHHHHHHH
Confidence 87 5 89999999999999999999997 6999887 99999999999999999 888888864
No 56
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.60 E-value=1.9e-15 Score=128.77 Aligned_cols=97 Identities=24% Similarity=0.440 Sum_probs=71.1
Q ss_pred EEEEEEeeCCC-CCCCceeeEEEEec-CceEEEEecCCC--CCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccc
Q 046849 296 KQGYLLKRSSN-LRGDWKRRFFVLNS-QGTLYYYRNKGI--KSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLN 371 (760)
Q Consensus 296 k~G~L~K~~~~-~~~~W~rR~fvl~~-~~~l~y~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (760)
|+|||+.+.++ ++.+|.|.||..+. ++.+.+..-... ...+ |. +. .
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~-------------------------g~-v~----~ 50 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMK-------------------------GA-VA----Q 50 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccC-------------------------cc-cc----c
Confidence 58999988754 55689999999875 345433221111 0000 11 11 1
Q ss_pred cccccccCceeccCCCCCCCCceEEEEecCc--eeEEEcCCHHHHHHHHHHHHH
Q 046849 372 CRTVDLRTSAIKMDGEDTDLRLCFRIISPVK--TYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~--~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
.+.+.|..|++++ .+..||||||+|+++++ +++|||+|+.|+..||+||++
T Consensus 51 ~e~~~l~sc~~r~-~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 51 DETLTLKSCSRRK-TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred ceEEeeeeccccc-cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 4678999999998 67889999999999987 899999999999999999974
No 57
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.59 E-value=5.5e-15 Score=127.80 Aligned_cols=90 Identities=33% Similarity=0.563 Sum_probs=71.9
Q ss_pred EEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccc
Q 046849 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTV 375 (760)
Q Consensus 296 k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 375 (760)
++|||+|+++.. +.|++|||+|. ++.|+||+++.... ..+.+.|
T Consensus 1 ~~G~L~k~~~~~-~~W~~r~~vl~-~~~L~~~~~~~~~~----------------------------------~~~~~~i 44 (91)
T cd01246 1 VEGWLLKWTNYL-KGWQKRWFVLD-NGLLSYYKNKSSMR----------------------------------GKPRGTI 44 (91)
T ss_pred CeEEEEEecccC-CCceeeEEEEE-CCEEEEEecCccCC----------------------------------CCceEEE
Confidence 489999997655 58999999998 88999998875420 0124567
Q ss_pred cccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHH
Q 046849 376 DLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 376 ~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.|..|.+... ..++++|.|.+++ ++|+|+|+|++|+.+||.+|+.|
T Consensus 45 ~l~~~~~~~~---~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 45 LLSGAVISED---DSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EeceEEEEEC---CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 7887776653 2347999999998 99999999999999999999864
No 58
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.59 E-value=5e-15 Score=127.78 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=64.3
Q ss_pred EEEEeeCCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccc
Q 046849 298 GYLLKRSSN---LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRT 374 (760)
Q Consensus 298 G~L~K~~~~---~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (760)
|.|.||+.. ....||||||+|+ +..|+||+++...+.| .
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt-~~~L~Y~k~~~~~~~g-------------------------------------~ 46 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLT-TTHLSWAKDVQCKKSA-------------------------------------L 46 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEEC-CCEEEEECCCCCceee-------------------------------------e
Confidence 455566532 3468999999998 8899999887665555 3
Q ss_pred ccccCce--eccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHH
Q 046849 375 VDLRTSA--IKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 375 i~l~~~~--v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
|+|.... ........++.|+|+|++|+++|+|||+|++|+++||.+|+.
T Consensus 47 I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 47 IKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred EEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 4443322 222112234568999999999999999999999999999975
No 59
>PHA02791 ankyrin-like protein; Provisional
Probab=99.59 E-value=2.7e-15 Score=156.67 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=64.8
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCC
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCL 694 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~ 694 (760)
+.||.|+..|+.+.+..|+..| ++ +|. . .|.||||+|+..|+. +++..|+.+|+++|..| .
T Consensus 32 TpLh~Aa~~g~~eiv~~Ll~~g-a~-~n~--~--d~~TpLh~Aa~~g~~-----------eiV~lLL~~Gadvn~~d--~ 92 (284)
T PHA02791 32 SALYYAIADNNVRLVCTLLNAG-AL-KNL--L--ENEFPLHQAATLEDT-----------KIVKILLFSGMDDSQFD--D 92 (284)
T ss_pred cHHHHHHHcCCHHHHHHHHHCc-CC-CcC--C--CCCCHHHHHHHCCCH-----------HHHHHHHHCCCCCCCCC--C
Confidence 3488888888877777776664 44 443 2 267888888877643 34445567788888777 7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINM 724 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~ 724 (760)
.|+||||+||..|+.++|++|+.+||++|.
T Consensus 93 ~G~TpLh~Aa~~g~~eivk~Ll~~gadin~ 122 (284)
T PHA02791 93 KGNTALYYAVDSGNMQTVKLFVKKNWRLMF 122 (284)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence 788888888888888888888888887765
No 60
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.58 E-value=2.4e-13 Score=129.42 Aligned_cols=177 Identities=19% Similarity=0.258 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHH
Q 046849 15 KQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKE 94 (760)
Q Consensus 15 a~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~ 94 (760)
+++..+|++...++..++++++...++++++. ..+...|.+.|.+++....-. |..=..|....+++..+..
T Consensus 1 at~~~le~kt~~mr~~~Kkl~kr~~~~~ea~~--~~~~~~f~~ll~~~~~~~~~~------~al~~yf~~~~~~~~~~~~ 72 (192)
T cd07608 1 ATLSNLERKTRLLRSYLKRLIKRIVKLIEAQD--QLVDLEFNELLSEAKFKNDFN------VALDSYFDPFLLNLAFFLR 72 (192)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcccccc------HHHHHHhhHHHHHHHHHHH
Confidence 46789999999999999999999999999865 445677888888777433221 2344778888899999988
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 95 LLRSQVEHVLINRLTEFLT-VDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNL 173 (760)
Q Consensus 95 ~l~~~~~~~~~~pL~~f~~-~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldy 173 (760)
....++...+++|+..+.. ++|+.+...||.||..+++||+.++||++...+++ +.+..+...|+.|+...|||
T Consensus 73 ~~~~~lq~~~iep~~~~y~~~dik~~~~kkK~FEeeSKdYYs~l~kYLsn~~~~k-----~~DSK~l~KRk~FEL~RFDY 147 (192)
T cd07608 73 DVCQDLQLKKIEPLLKIYSINDIKELSDKKKDFEEESKDYYSWLSKYLSNESDKK-----RPDSKLLAKRKTFELSRFDY 147 (192)
T ss_pred HHHHHHHHHHHhhhhhccccchHHHHHHHhhhHHHHhHHHHHHHHHHhccccccc-----CcchHHHHHHHHHHHHHhhH
Confidence 9999999999999999999 99999999999999999999999999999874222 34567889999999999999
Q ss_pred HHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHH
Q 046849 174 VSALTNIEAK-KKYEFLESISAIMDVHLRYFK 204 (760)
Q Consensus 174 v~~i~~l~~~-k~~e~l~~l~~~~~a~~~ff~ 204 (760)
...|+++... +.-++++.+.+|...++..+.
T Consensus 148 ~~~mqdl~ggr~~qell~~L~kf~~~q~~~~~ 179 (192)
T cd07608 148 LNYLQDLHGGRKEQELLSILTKFINQQYDSIA 179 (192)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999854 445899999998888777665
No 61
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.57 E-value=4.8e-15 Score=141.74 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=95.4
Q ss_pred chhhhHHHHhcCHHHHHHHHHhcCCcccC---cccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCC
Q 046849 614 TTSIWEAVKTQNLQEVYRLIVTSDANIIN---TTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDP 690 (760)
Q Consensus 614 ~~~L~~A~~~~~~~~v~~ll~~g~~d~~n---~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~ 690 (760)
.+.||.|+..|++..+....... .+ .+ ....|..|.||||+|+..|+.. ..+++..++++|+++|.+
T Consensus 18 ~tpLh~A~~~g~~~~l~~~~~~~-~~-~~~~~~~~~d~~g~t~Lh~a~~~~~~~--------~~e~v~~Ll~~gadin~~ 87 (154)
T PHA02736 18 ENILHYLCRNGGVTDLLAFKNAI-SD-ENRYLVLEYNRHGKQCVHIVSNPDKAD--------PQEKLKLLMEWGADINGK 87 (154)
T ss_pred CCHHHHHHHhCCHHHHHHHHHHh-cc-hhHHHHHHhcCCCCEEEEeecccCchh--------HHHHHHHHHHcCCCcccc
Confidence 34499999999854333221111 11 11 1124667999999999987421 123345668999999998
Q ss_pred CCCC-CCChHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 691 GNCL-QGGSLLHLACQCGNLVMLELLIQ-FGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 691 ~~~~-~G~TpLh~Aa~~g~~~~v~lLL~-~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+ . .|+||||+|+..|+.+++++|+. .|+++|. +|..|.||||+|+..|+ .+++++|++
T Consensus 88 ~--~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~------~~~~g~tpL~~A~~~~~---~~i~~~Ll~ 147 (154)
T PHA02736 88 E--RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI------LNYAFKTPYYVACERHD---AKMMNILRA 147 (154)
T ss_pred C--CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc------ccCCCCCHHHHHHHcCC---HHHHHHHHH
Confidence 6 4 79999999999999999999997 5999887 99999999999999999 999998864
No 62
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.57 E-value=3.8e-15 Score=155.42 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCccc--CCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTF--DDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCL 694 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~--~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~ 694 (760)
|+.|+..|+.+.+..||..| ++ +|... .+..|.||||+|+..++ .+++..|+++|||+|..+ +.
T Consensus 37 L~~A~~~~~~eivk~LL~~G-Ad-iN~~~~~sd~~g~TpLh~Aa~~~~-----------~eivklLL~~GADVN~~~-~~ 102 (300)
T PHA02884 37 LYSSIKFHYTDIIDAILKLG-AD-PEAPFPLSENSKTNPLIYAIDCDN-----------DDAAKLLIRYGADVNRYA-EE 102 (300)
T ss_pred HHHHHHcCCHHHHHHHHHCC-CC-ccccCcccCCCCCCHHHHHHHcCC-----------HHHHHHHHHcCCCcCccc-CC
Confidence 88999999988888888775 66 66532 14579999999998864 445567799999999853 15
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCC
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGA 747 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~ 747 (760)
.|.||||+|+..|+.+++++|+.+||++|. +|..|.||||+|+..++
T Consensus 103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin~------kd~~G~TpL~~A~~~~~ 149 (300)
T PHA02884 103 AKITPLYISVLHGCLKCLEILLSYGADINI------QTNDMVTPIELALMICN 149 (300)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHhCC
Confidence 799999999999999999999999999888 99999999999999776
No 63
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.56 E-value=1.6e-12 Score=132.73 Aligned_cols=195 Identities=27% Similarity=0.477 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchH-------HHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDS-------AFADALEAFGGGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
.+...++++..++.++.+|.+.++.|.++...+..... .|+++|..++....+... + +.++..|+..+.+
T Consensus 27 ~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~-~~~l~~~~~~~~~ 103 (229)
T PF03114_consen 27 EFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSS--L-GNALEKFGEAMQE 103 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCH--H-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccch--h-hhHHHHHHHHHHH
Confidence 46778888999999999999999999999888887777 899999888765544332 2 3689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEK 168 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~ 168 (760)
+...+..+...+...++.||.+|+ .+++.++..++++++...+||.+..++.++.+++..... +.++.+++..|..
T Consensus 104 i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~---~~~l~~a~~~f~~ 179 (229)
T PF03114_consen 104 IEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSK---EEKLEEAKEEFEA 179 (229)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999999999999875543322 7789999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046849 169 SRFNLVSALTNIEAKKKYEFL-ESISAIMDVHLRYFKLGFDLLSKIEPYVH 218 (760)
Q Consensus 169 asldyv~~i~~l~~~k~~e~l-~~l~~~~~a~~~ff~~g~~~~~~~~~~~~ 218 (760)
...++...|..+..... +++ ..+..|+.++..||+++++.+.++.|.+.
T Consensus 180 ~~~~l~~~l~~l~~~~~-~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 180 LNEELKEELPKLFAKRQ-DILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999987765 666 99999999999999999999999888763
No 64
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.56 E-value=2.1e-14 Score=126.21 Aligned_cols=94 Identities=23% Similarity=0.382 Sum_probs=63.1
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGI-KSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
++|+|||.|+++. .+.|++|||+|++++.|+||++... ...|. .+.
T Consensus 1 v~k~G~L~K~g~~-~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~--------------------------------i~l 47 (102)
T cd01241 1 VVKEGWLHKRGEY-IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFL--------------------------------PPL 47 (102)
T ss_pred CcEEEEEEeecCC-CCCCeeEEEEEeCCCeEEEEecCCCccCccc--------------------------------ccc
Confidence 4689999999864 4599999999986677776665432 11111 012
Q ss_pred ccccccCceeccCCCCCCCCceEEEEe------cCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIIS------PVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~------~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
..+.+..|.+.. .+ ..++++|.|.. +.| +|+|+|++||++||.+|+.+
T Consensus 48 ~~~~v~~~~~~~-~~-~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 48 NNFSVAECQLMK-TE-RPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCeEEeeeeeee-cc-CCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 233444455533 22 35678999972 334 55799999999999999875
No 65
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.55 E-value=6.3e-15 Score=167.65 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=99.5
Q ss_pred chhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhh-----------------------
Q 046849 614 TTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKV----------------------- 670 (760)
Q Consensus 614 ~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~----------------------- 670 (760)
...||.|+..|+.+.|..|+..| ++ +| ..|..|.||||+||..|+...+...+
T Consensus 38 ~tPLh~A~~~g~~e~vk~Ll~~g-ad-vn--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~ 113 (477)
T PHA02878 38 FIPLHQAVEARNLDVVKSLLTRG-HN-VN--QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN 113 (477)
T ss_pred cchHHHHHHcCCHHHHHHHHHCC-CC-CC--CCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence 34599999999999999888875 55 55 46778999999999877543321000
Q ss_pred --------cc----------------------cccCCCCcccCcCCCCCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcC
Q 046849 671 --------KK----------------------EENNGPAGCQRIKDSNDPGNCLQ-GGSLLHLACQCGNLVMLELLIQFG 719 (760)
Q Consensus 671 --------~~----------------------~~~~~~~ll~~gadvn~~~~~~~-G~TpLh~Aa~~g~~~~v~lLL~~G 719 (760)
.+ ..+++..++++|+++|..+ .. |+||||+||..|+.+++++|+++|
T Consensus 114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~--~~~g~tpLh~A~~~~~~~iv~~Ll~~g 191 (477)
T PHA02878 114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKD--RHKGNTALHYATENKDQRLTELLLSYG 191 (477)
T ss_pred HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccC--CCCCCCHHHHHHhCCCHHHHHHHHHCC
Confidence 00 0125556688999999998 77 999999999999999999999999
Q ss_pred CCcccc---------------------------CCCCCCCCCCCcHHHHHHHc-CCCChHHHHHHhh
Q 046849 720 ADINMR---------------------------ARPSIKDGGGLSSLERAMEM-GAITDEELFILLA 758 (760)
Q Consensus 720 Advn~~---------------------------Ad~~~~d~~G~TpL~~A~~~-g~~~~~eiv~lL~ 758 (760)
|++|.+ |+++.+|..|.||||+|+.. ++ .+++++|+
T Consensus 192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~---~~iv~~Ll 255 (477)
T PHA02878 192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD---YDILKLLL 255 (477)
T ss_pred CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCC---HHHHHHHH
Confidence 999874 55555666666666666543 44 55555554
No 66
>PHA02791 ankyrin-like protein; Provisional
Probab=99.55 E-value=3.4e-14 Score=148.40 Aligned_cols=128 Identities=14% Similarity=0.070 Sum_probs=84.0
Q ss_pred hhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhc-----------------------c
Q 046849 616 SIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVK-----------------------K 672 (760)
Q Consensus 616 ~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~-----------------------~ 672 (760)
.|+.|+..|+.+.+..|+..| ++ +|. .|..|.||||+|+..|+.+++..++. +
T Consensus 64 pLh~Aa~~g~~eiV~lLL~~G-ad-vn~--~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g 139 (284)
T PHA02791 64 PLHQAATLEDTKIVKILLFSG-MD-DSQ--FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 139 (284)
T ss_pred HHHHHHHCCCHHHHHHHHHCC-CC-CCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence 377777777776666666654 44 443 55667888888877765444321110 1
Q ss_pred cccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcH-HHHHHHcCCCChH
Q 046849 673 EENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSS-LERAMEMGAITDE 751 (760)
Q Consensus 673 ~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~Tp-L~~A~~~g~~~~~ 751 (760)
..+++..|+++|.+. .+ ...|.||||+|+..|+.++|++||++||++|. +|..|.|| ||+|+..|+ .
T Consensus 140 ~~eivk~LL~~~~~~--~d-~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~------~d~~g~t~~L~~Aa~~~~---~ 207 (284)
T PHA02791 140 DVSIVSYFLSEIPST--FD-LAILLSCIHITIKNGHVDMMILLLDYMTSTNT------NNSLLFIPDIKLAIDNKD---L 207 (284)
T ss_pred CHHHHHHHHhcCCcc--cc-cccCccHHHHHHHcCCHHHHHHHHHCCCCCCc------ccCCCCChHHHHHHHcCC---H
Confidence 122333345554432 11 01367788888878888888888888777766 89999987 999999999 8
Q ss_pred HHHHHhhc
Q 046849 752 ELFILLAE 759 (760)
Q Consensus 752 eiv~lL~~ 759 (760)
+++++|++
T Consensus 208 e~v~lLl~ 215 (284)
T PHA02791 208 EMLQALFK 215 (284)
T ss_pred HHHHHHHH
Confidence 99998864
No 67
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.53 E-value=3.2e-15 Score=155.89 Aligned_cols=116 Identities=21% Similarity=0.247 Sum_probs=93.8
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
|..|+-.|+++.++.|+.+| +| ++ ..+..|.|.||+||..|+ .++..+|++.|||+|.++ ..|
T Consensus 121 LraACfDG~leivKyLvE~g-ad-~~--IanrhGhTcLmIa~ykGh-----------~~I~qyLle~gADvn~ks--~kG 183 (615)
T KOG0508|consen 121 LRAACFDGHLEIVKYLVEHG-AD-PE--IANRHGHTCLMIACYKGH-----------VDIAQYLLEQGADVNAKS--YKG 183 (615)
T ss_pred HHHHHhcchhHHHHHHHHcC-CC-Cc--ccccCCCeeEEeeeccCc-----------hHHHHHHHHhCCCcchhc--ccC
Confidence 78888888888888888664 44 44 466788888888888875 345566788888888888 888
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+|+||.|+..|+++++++||.+||.++ +|..|.|||..|+..|+ .++|++|.+
T Consensus 184 NTALH~caEsG~vdivq~Ll~~ga~i~-------~d~~GmtPL~~Aa~tG~---~~iVe~L~~ 236 (615)
T KOG0508|consen 184 NTALHDCAESGSVDIVQLLLKHGAKID-------VDGHGMTPLLLAAVTGH---TDIVERLLQ 236 (615)
T ss_pred chHHHhhhhcccHHHHHHHHhCCceee-------ecCCCCchHHHHhhhcc---hHHHHHHhc
Confidence 888888888888888888888888887 58888888888888888 888888863
No 68
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.53 E-value=1.3e-14 Score=162.06 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=99.3
Q ss_pred cchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCC
Q 046849 613 RTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGN 692 (760)
Q Consensus 613 ~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~ 692 (760)
+.+.|+.|+..|+.+.+..|+..| ++ ++. .+..|.||||+|+..|+ .+++..++++|+++|..|
T Consensus 102 g~tpL~~A~~~~~~~iv~~Ll~~g-ad-~~~--~~~~g~tpLh~A~~~~~-----------~~~v~~Ll~~g~~~~~~d- 165 (413)
T PHA02875 102 GMTPLHLATILKKLDIMKLLIARG-AD-PDI--PNTDKFSPLHLAVMMGD-----------IKGIELLIDHKACLDIED- 165 (413)
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCC-CC-CCC--CCCCCCCHHHHHHHcCC-----------HHHHHHHHhcCCCCCCCC-
Confidence 334499999999988888777775 55 443 56679999999998864 345566789999999988
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCC-CcHHHHHHHcCCCChHHHHHHhhc
Q 046849 693 CLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGG-LSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 693 ~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G-~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|+||||+|+..|+.+++++|+++||++|. .+..| .||+|+|+..|+ .+++++|++
T Consensus 166 -~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~------~~~~~~~t~l~~A~~~~~---~~iv~~Ll~ 223 (413)
T PHA02875 166 -CCGCTPLIIAMAKGDIAICKMLLDSGANIDY------FGKNGCVAALCYAIENNK---IDIVRLFIK 223 (413)
T ss_pred -CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc------CCCCCCchHHHHHHHcCC---HHHHHHHHH
Confidence 8899999999999999999999999999887 77776 488999999999 899998875
No 69
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.52 E-value=2.4e-14 Score=143.88 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=96.6
Q ss_pred chhhhHHHHhc--CHHHHHHHHHhcCCcccCcccCC-CCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCC
Q 046849 614 TTSIWEAVKTQ--NLQEVYRLIVTSDANIINTTFDD-VVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDP 690 (760)
Q Consensus 614 ~~~L~~A~~~~--~~~~v~~ll~~g~~d~~n~~~~d-~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~ 690 (760)
.+.||.|+..+ +.+.+..||.. +++ +|. .+ ..|.||||+|+...+. ...+++..++++|+|+|..
T Consensus 52 ~TpLh~a~~~~~~~~eiv~~Ll~~-gad-vn~--~~~~~g~TpLh~a~~~~~~--------~~~eiv~~Ll~~gadin~~ 119 (209)
T PHA02859 52 ETPIFSCLEKDKVNVEILKFLIEN-GAD-VNF--KTRDNNLSALHHYLSFNKN--------VEPEILKILIDSGSSITEE 119 (209)
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHC-CCC-CCc--cCCCCCCCHHHHHHHhCcc--------ccHHHHHHHHHCCCCCCCc
Confidence 34599998755 66777777766 466 665 43 4799999998764311 1244666779999999999
Q ss_pred CCCCCCChHHHHHHH--cCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHH-HHHcCCCChHHHHHHhhc
Q 046849 691 GNCLQGGSLLHLACQ--CGNLVMLELLIQFGADINMRARPSIKDGGGLSSLER-AMEMGAITDEELFILLAE 759 (760)
Q Consensus 691 ~~~~~G~TpLh~Aa~--~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~-A~~~g~~~~~eiv~lL~~ 759 (760)
| ..|.||||+|+. .++.+++++|+++|+++|. +|..|.||||. |+..++ .+++.+|++
T Consensus 120 d--~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~------~d~~g~t~Lh~~a~~~~~---~~iv~~Ll~ 180 (209)
T PHA02859 120 D--EDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN------KDFDNNNILYSYILFHSD---KKIFDFLTS 180 (209)
T ss_pred C--CCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc------ccCCCCcHHHHHHHhcCC---HHHHHHHHH
Confidence 9 999999999876 4689999999999999888 99999999995 566788 899998874
No 70
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.52 E-value=1.2e-14 Score=151.53 Aligned_cols=119 Identities=22% Similarity=0.270 Sum_probs=106.5
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCC
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCL 694 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~ 694 (760)
..||.|+..|+++.|+.|+..| ++ ||..+. ...|||-.||.-|+ .+++++|+++|||+++.| .
T Consensus 86 ppLWaAsaAGHl~vVk~L~~~g-a~-VN~tT~--TNStPLraACfDG~-----------leivKyLvE~gad~~Ian--r 148 (615)
T KOG0508|consen 86 PPLWAASAAGHLEVVKLLLRRG-AS-VNDTTR--TNSTPLRAACFDGH-----------LEIVKYLVEHGADPEIAN--R 148 (615)
T ss_pred chhhHHhccCcHHHHHHHHHhc-Cc-cccccc--cCCccHHHHHhcch-----------hHHHHHHHHcCCCCcccc--c
Confidence 3499999999999888888886 76 776443 45699999999875 557778899999999999 9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.|.|.||+||+.||.+|+++|++.|||+|. ++..|.|+||.|++.|| .+|+.+|+.
T Consensus 149 hGhTcLmIa~ykGh~~I~qyLle~gADvn~------ks~kGNTALH~caEsG~---vdivq~Ll~ 204 (615)
T KOG0508|consen 149 HGHTCLMIACYKGHVDIAQYLLEQGADVNA------KSYKGNTALHDCAESGS---VDIVQLLLK 204 (615)
T ss_pred CCCeeEEeeeccCchHHHHHHHHhCCCcch------hcccCchHHHhhhhccc---HHHHHHHHh
Confidence 999999999999999999999999999998 99999999999999999 999999975
No 71
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.51 E-value=1.5e-13 Score=121.43 Aligned_cols=97 Identities=36% Similarity=0.671 Sum_probs=77.3
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
++++|||.|++ ...+.|++|||||. ++.|+||+++.... ...+..
T Consensus 1 ~~~~G~L~~~~-~~~~~wk~r~~vL~-~~~L~~~~~~~~~~---------------------------------~~~~~~ 45 (104)
T PF00169_consen 1 CIKEGWLLKKS-SSRKKWKKRYFVLR-DSYLLYYKSSKDKS---------------------------------DSKPKG 45 (104)
T ss_dssp EEEEEEEEEEE-SSSSSEEEEEEEEE-TTEEEEESSTTTTT---------------------------------ESSESE
T ss_pred CEEEEEEEEEC-CCCCCeEEEEEEEE-CCEEEEEecCcccc---------------------------------ceeeeE
Confidence 46899999998 44568999999999 78888888765310 112355
Q ss_pred cccccCceeccCCCC-----CCCCceEEEEecCc-eeEEEcCCHHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGED-----TDLRLCFRIISPVK-TYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~-----~~~~~~F~i~~~~~-~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
.|+|..+.+...... .+.++||.|.++++ +|+|+|+|++|+..||.+|+.++
T Consensus 46 ~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 46 SIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 788888877764443 36789999999996 99999999999999999999876
No 72
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.51 E-value=1.9e-14 Score=173.55 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=72.8
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
|+.|+..|+...+..++..| +| +| ..|..|.||||+|+..|+.. ++..|+++|+|+|..| .+|
T Consensus 529 L~~Aa~~g~~~~l~~Ll~~G-~d-~n--~~d~~G~TpLh~Aa~~g~~~-----------~v~~Ll~~gadin~~d--~~G 591 (823)
T PLN03192 529 LLTVASTGNAALLEELLKAK-LD-PD--IGDSKGRTPLHIAASKGYED-----------CVLVLLKHACNVHIRD--ANG 591 (823)
T ss_pred HHHHHHcCCHHHHHHHHHCC-CC-CC--CCCCCCCCHHHHHHHcChHH-----------HHHHHHhcCCCCCCcC--CCC
Confidence 55555566655555555443 33 33 34455666666666555322 2233455566666555 556
Q ss_pred ChHHHHHHH-------------------------------cCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHc
Q 046849 697 GSLLHLACQ-------------------------------CGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEM 745 (760)
Q Consensus 697 ~TpLh~Aa~-------------------------------~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~ 745 (760)
+||||+|+. .|+.+++++|+++|||+|. +|.+|.||||+|+..
T Consensus 592 ~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~------~d~~G~TpLh~A~~~ 665 (823)
T PLN03192 592 NTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS------EDHQGATALQVAMAE 665 (823)
T ss_pred CCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHC
Confidence 666555554 5555555555555555554 999999999999999
Q ss_pred CCCChHHHHHHhhc
Q 046849 746 GAITDEELFILLAE 759 (760)
Q Consensus 746 g~~~~~eiv~lL~~ 759 (760)
|+ .+++++|++
T Consensus 666 g~---~~iv~~Ll~ 676 (823)
T PLN03192 666 DH---VDMVRLLIM 676 (823)
T ss_pred Cc---HHHHHHHHH
Confidence 99 999999975
No 73
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.51 E-value=2.6e-14 Score=160.70 Aligned_cols=126 Identities=22% Similarity=0.226 Sum_probs=106.0
Q ss_pred chhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCC
Q 046849 614 TTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNC 693 (760)
Q Consensus 614 ~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~ 693 (760)
.+.||.|+..|+.+.+..|+..| ++ +| ..|..|.||||+|+..|+ .+++..++++|+++|..+
T Consensus 125 ~T~Lh~A~~~~~~~~v~~Ll~~g-ad-~n--~~d~~g~tpLh~A~~~~~-----------~~iv~~Ll~~g~~~n~~~-- 187 (434)
T PHA02874 125 KTFLHYAIKKGDLESIKMLFEYG-AD-VN--IEDDNGCYPIHIAIKHNF-----------FDIIKLLLEKGAYANVKD-- 187 (434)
T ss_pred ccHHHHHHHCCCHHHHHHHHhCC-CC-CC--CcCCCCCCHHHHHHHCCc-----------HHHHHHHHHCCCCCCCCC--
Confidence 34499999999998888888775 55 55 467789999999998864 345566789999999988
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCcccc-------------------------CCCCCCCCCCCcHHHHHHHcC-C
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMR-------------------------ARPSIKDGGGLSSLERAMEMG-A 747 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~-------------------------Ad~~~~d~~G~TpL~~A~~~g-~ 747 (760)
..|+||||+|+..|+.+++++|+++|++++.+ ++++.+|..|.||||+|+..+ +
T Consensus 188 ~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~ 267 (434)
T PHA02874 188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCD 267 (434)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCc
Confidence 89999999999999999999999999998765 788889999999999999875 6
Q ss_pred CChHHHHHHhhc
Q 046849 748 ITDEELFILLAE 759 (760)
Q Consensus 748 ~~~~eiv~lL~~ 759 (760)
.+++++|.+
T Consensus 268 ---~~iv~~Ll~ 276 (434)
T PHA02874 268 ---IDIIDILLY 276 (434)
T ss_pred ---HHHHHHHHH
Confidence 688888864
No 74
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.51 E-value=2.5e-14 Score=143.81 Aligned_cols=118 Identities=17% Similarity=0.061 Sum_probs=96.8
Q ss_pred hhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCC
Q 046849 616 SIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQ 695 (760)
Q Consensus 616 ~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~ 695 (760)
.|+.|+..|+.+.|..|+.. +|. .+..|.||||.|+..+. ...+++..++++|+|+|..+ +..
T Consensus 24 pL~~A~~~~~~~~vk~Li~~-----~n~--~~~~g~TpLh~a~~~~~---------~~~eiv~~Ll~~gadvn~~~-~~~ 86 (209)
T PHA02859 24 PLFYYVEKDDIEGVKKWIKF-----VND--CNDLYETPIFSCLEKDK---------VNVEILKFLIENGADVNFKT-RDN 86 (209)
T ss_pred HHHHHHHhCcHHHHHHHHHh-----hhc--cCccCCCHHHHHHHcCC---------CCHHHHHHHHHCCCCCCccC-CCC
Confidence 39999999999999988764 332 45679999999987642 13456677899999999986 137
Q ss_pred CChHHHHHHHc---CCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHH--cCCCChHHHHHHhhc
Q 046849 696 GGSLLHLACQC---GNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAME--MGAITDEELFILLAE 759 (760)
Q Consensus 696 G~TpLh~Aa~~---g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~--~g~~~~~eiv~lL~~ 759 (760)
|+||||+|+.. ++.+++++|+++||++|. +|..|.||||+|+. .++ .+++++|++
T Consensus 87 g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~------~d~~G~TpLh~a~~~~~~~---~~iv~~Li~ 146 (209)
T PHA02859 87 NLSALHHYLSFNKNVEPEILKILIDSGSSITE------EDEDGKNLLHMYMCNFNVR---INVIKLLID 146 (209)
T ss_pred CCCHHHHHHHhCccccHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHhccCC---HHHHHHHHH
Confidence 99999998764 479999999999999988 99999999999986 467 899999875
No 75
>PHA02795 ankyrin-like protein; Provisional
Probab=99.50 E-value=2.4e-14 Score=155.18 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=88.8
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccC---CCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFD---DVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNC 693 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~---d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~ 693 (760)
+|.|+..++.+.+..|+..|..+ .+.... +..|.|++|.|+..+ ..+++..++++|||+|.+|
T Consensus 153 lh~A~~~~~~eIVk~Lls~Ga~~-~n~~~~~l~~~~~~t~l~~a~~~~-----------~~eIve~LIs~GADIN~kD-- 218 (437)
T PHA02795 153 YFRGICKKESSVVEFILNCGIPD-ENDVKLDLYKIIQYTRGFLVDEPT-----------VLEIYKLCIPYIEDINQLD-- 218 (437)
T ss_pred HHHHHHcCcHHHHHHHHhcCCcc-cccccchhhhhhccchhHHHHhcC-----------HHHHHHHHHhCcCCcCcCC--
Confidence 56666666655555555554211 221100 122445555555443 3455666799999999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCC-----ChHHHHHHhhc
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAI-----TDEELFILLAE 759 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~-----~~~eiv~lL~~ 759 (760)
..|.||||+|+..|+.+++++|+++||++|. +|..|.||||+|+..|+. .-.+++++|++
T Consensus 219 ~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~------~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~ 283 (437)
T PHA02795 219 AGGRTLLYRAIYAGYIDLVSWLLENGANVNA------VMSNGYTCLDVAVDRGSVIARRETHLKILEILLR 283 (437)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence 9999999999999999999999999999988 999999999999999841 11589998864
No 76
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5.7e-14 Score=136.88 Aligned_cols=96 Identities=29% Similarity=0.563 Sum_probs=76.9
Q ss_pred ceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 293 QTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 293 ~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
.+.++|||+|.+++..++||||||+|. +..||||.-.+++.+ +
T Consensus 259 npdREGWLlKlgg~rvktWKrRWFiLt-dNCLYYFe~tTDKEP------------------------------------r 301 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNRVKTWKRRWFILT-DNCLYYFEYTTDKEP------------------------------------R 301 (395)
T ss_pred CccccceeeeecCCcccchhheeEEee-cceeeeeeeccCCCC------------------------------------C
Confidence 467899999999877789999999998 788898876544322 3
Q ss_pred ccccccCceeccCCCCCCCCceEEEEecC----------------------ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIISPV----------------------KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~~~----------------------~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
+.|.|..-+|+. .++..++|||+|..|+ ..|.++|.|.+|+++||.+|+.+|+
T Consensus 302 GIIpLeNlsir~-VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 302 GIIPLENLSIRE-VEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred cceeccccceee-ccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 355666666665 5677899999998864 1499999999999999999998886
No 77
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.50 E-value=4.6e-14 Score=158.60 Aligned_cols=135 Identities=23% Similarity=0.230 Sum_probs=98.5
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccc------------cCCCCccc
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEE------------NNGPAGCQ 682 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~------------~~~~~ll~ 682 (760)
..|+.|+..|+.+.+..|+..| ++ +|. .+..|.||||.|+..|+..++..+..... +++..+++
T Consensus 37 tpL~~A~~~g~~~iv~~Ll~~G-a~-~n~--~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~ 112 (434)
T PHA02874 37 TPLIDAIRSGDAKIVELFIKHG-AD-INH--INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD 112 (434)
T ss_pred CHHHHHHHcCCHHHHHHHHHCC-CC-CCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence 4499999999999998888775 55 554 56679999999999998776644332221 23344577
Q ss_pred CcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc---------------------------CCCCCCCCCC
Q 046849 683 RIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMR---------------------------ARPSIKDGGG 735 (760)
Q Consensus 683 ~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~---------------------------Ad~~~~d~~G 735 (760)
.|+++|..+ ..|.||||+|+..|+.++|++|+++|+++|.+ ++++..|..|
T Consensus 113 ~g~d~n~~~--~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g 190 (434)
T PHA02874 113 CGIDVNIKD--AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG 190 (434)
T ss_pred CcCCCCCCC--CCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence 888888888 88899999999999999999999999888773 4455555666
Q ss_pred CcHHHHHHHcCCCChHHHHHHhh
Q 046849 736 LSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 736 ~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
.||||+|+..|+ .+++++|.
T Consensus 191 ~tpL~~A~~~g~---~~iv~~Ll 210 (434)
T PHA02874 191 ESPLHNAAEYGD---YACIKLLI 210 (434)
T ss_pred CCHHHHHHHcCC---HHHHHHHH
Confidence 666666666665 55555554
No 78
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.48 E-value=1.4e-13 Score=114.81 Aligned_cols=87 Identities=29% Similarity=0.525 Sum_probs=71.9
Q ss_pred EEEEeeCCCCCCCceeeEEEEe-cCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccccc
Q 046849 298 GYLLKRSSNLRGDWKRRFFVLN-SQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTVD 376 (760)
Q Consensus 298 G~L~K~~~~~~~~W~rR~fvl~-~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 376 (760)
|||.|+.....++|+||||+|+ ..|.|.||.++.+.. ..+.|+
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~------------------------------------~rGsi~ 44 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK------------------------------------LRGSID 44 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCe------------------------------------eEeEEE
Confidence 8999987777789999999993 389999999765421 156788
Q ss_pred ccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 377 LRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 377 l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
+..+.+... .+..+|+|.+...+|+|.|.|++|.+.|+.+|+.+
T Consensus 45 v~~a~is~~----~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 45 VSLAVISAN----KKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred ccceEEEec----CCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 888887753 23458999999999999999999999999999865
No 79
>PHA02946 ankyin-like protein; Provisional
Probab=99.48 E-value=6.1e-14 Score=157.00 Aligned_cols=131 Identities=15% Similarity=0.034 Sum_probs=82.7
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCcccccccccccc--chhhhh----------------------h
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYS--EIDFHK----------------------V 670 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~--~~~~~~----------------------~ 670 (760)
+.||.|+..|+.+.+..||..| ++ +|. .|..|.||||+|+..++. +++..+ .
T Consensus 74 TpLh~Aa~~g~~eiv~lLL~~G-Ad-in~--~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~ 149 (446)
T PHA02946 74 YPLHIASKINNNRIVAMLLTHG-AD-PNA--CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACT 149 (446)
T ss_pred CHHHHHHHcCCHHHHHHHHHCc-CC-CCC--CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Confidence 3477777777776666666654 44 443 566777777776654421 111000 0
Q ss_pred cccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCC
Q 046849 671 KKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCG--NLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAI 748 (760)
Q Consensus 671 ~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g--~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~ 748 (760)
.+..+++..++++|+++|..| ..|+||||+|+..+ +.+++++|+.+||++|. +|.+|.||||+|+..|+
T Consensus 150 ~~~~~vv~~Ll~~gad~~~~d--~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~------~d~~G~TpLH~Aa~~~~- 220 (446)
T PHA02946 150 DPSERVFKKIMSIGFEARIVD--KFGKNHIHRHLMSDNPKASTISWMMKLGISPSK------PDHDGNTPLHIVCSKTV- 220 (446)
T ss_pred CCChHHHHHHHhccccccccC--CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHcCC-
Confidence 012334455577788888877 78888888877644 45788888888888776 77777777777777652
Q ss_pred ChHHHHHHhh
Q 046849 749 TDEELFILLA 758 (760)
Q Consensus 749 ~~~eiv~lL~ 758 (760)
...+++++|.
T Consensus 221 ~~~~iv~lLl 230 (446)
T PHA02946 221 KNVDIINLLL 230 (446)
T ss_pred CcHHHHHHHH
Confidence 1156666664
No 80
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.48 E-value=3.1e-13 Score=118.58 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=74.6
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
.+|+|||.|.+...+ .|+.|||+|-++ .|.|++.... ..+ ......+
T Consensus 2 ~ikeG~L~K~~~~~~-~~k~RyffLFnd-~Ll~~~~~~~-~~~------------------------------~~y~~~~ 48 (101)
T cd01219 2 LLKEGSVLKISSTTE-KTEERYLFLFND-LLLYCVPRKM-IGG------------------------------SKFKVRA 48 (101)
T ss_pred cccceEEEEEecCCC-CceeEEEEEeCC-EEEEEEcccc-cCC------------------------------CcEEEEE
Confidence 468999999986554 899999999955 6666653211 000 0112245
Q ss_pred cccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.|++..+.|.. .++.+.+++|.|.+++++|+|+|+|++|+++||.+|+.+|.
T Consensus 49 ~i~l~~~~v~~-~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 49 RIDVSGMQVCE-GDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEecccEEEEe-CCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 67888877764 34456789999999999999999999999999999999885
No 81
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.48 E-value=6e-14 Score=156.81 Aligned_cols=117 Identities=23% Similarity=0.203 Sum_probs=77.3
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
||.|+..|+.+.+..|+..|... .+. .+..|.||||+|+..|+ .+++..|+++|+|+|..+ ..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~-~~~--~~~~g~tpL~~A~~~~~-----------~~iv~~Ll~~gad~~~~~--~~g 135 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFA-DDV--FYKDGMTPLHLATILKK-----------LDIMKLLIARGADPDIPN--TDK 135 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcc-ccc--ccCCCCCHHHHHHHhCC-----------HHHHHHHHhCCCCCCCCC--CCC
Confidence 77777777777776666664221 121 23346777777776653 234445567777777766 667
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
.||||+|+..|+.+++++|+++|+++|. +|..|.||||+|+..|+ .+++++|+
T Consensus 136 ~tpLh~A~~~~~~~~v~~Ll~~g~~~~~------~d~~g~TpL~~A~~~g~---~eiv~~Ll 188 (413)
T PHA02875 136 FSPLHLAVMMGDIKGIELLIDHKACLDI------EDCCGCTPLIIAMAKGD---IAICKMLL 188 (413)
T ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCCCC------CCCCCCCHHHHHHHcCC---HHHHHHHH
Confidence 7777777777777777777777777665 67777777777777777 67776665
No 82
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.47 E-value=5.1e-14 Score=160.18 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=66.8
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
||.|+..|+.+.+..|+..| ++ +|. .|..|.||||.|+..|+. +++..|++.|+++|..| ..|
T Consensus 172 Lh~A~~~~~~~iv~~Ll~~g-ad-~n~--~d~~g~tpLh~A~~~~~~-----------~iv~~Ll~~ga~in~~d--~~g 234 (477)
T PHA02878 172 LHYATENKDQRLTELLLSYG-AN-VNI--PDKTNNSPLHHAVKHYNK-----------PIVHILLENGASTDARD--KCG 234 (477)
T ss_pred HHHHHhCCCHHHHHHHHHCC-CC-CCC--cCCCCCCHHHHHHHhCCH-----------HHHHHHHHcCCCCCCCC--CCC
Confidence 66666666655555555543 33 332 444566666666655432 23334455566666655 556
Q ss_pred ChHHHHHHHc-CCHHHHHHHHHcCCCcccc--------------------------CCCCCCCCCCCcHHHHHHHcC
Q 046849 697 GSLLHLACQC-GNLVMLELLIQFGADINMR--------------------------ARPSIKDGGGLSSLERAMEMG 746 (760)
Q Consensus 697 ~TpLh~Aa~~-g~~~~v~lLL~~GAdvn~~--------------------------Ad~~~~d~~G~TpL~~A~~~g 746 (760)
.||||+|+.. ++.+++++|+++||++|.+ ||++++|..|.||||+|+..+
T Consensus 235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~ 311 (477)
T PHA02878 235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQY 311 (477)
T ss_pred CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence 6666666543 4566666666666665542 455568999999999998754
No 83
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.47 E-value=6.4e-15 Score=144.41 Aligned_cols=109 Identities=24% Similarity=0.247 Sum_probs=82.9
Q ss_pred cchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCC
Q 046849 613 RTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGN 692 (760)
Q Consensus 613 ~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~ 692 (760)
+...||.|++.|....+.-||..| +. +|... .-..||||+|+..||.. ++..+|+..+|||+.|
T Consensus 34 gfsplhwaakegh~aivemll~rg-ar-vn~tn--mgddtplhlaaahghrd-----------ivqkll~~kadvnavn- 97 (448)
T KOG0195|consen 34 GFSPLHWAAKEGHVAIVEMLLSRG-AR-VNSTN--MGDDTPLHLAAAHGHRD-----------IVQKLLSRKADVNAVN- 97 (448)
T ss_pred CcchhhhhhhcccHHHHHHHHhcc-cc-ccccc--CCCCcchhhhhhcccHH-----------HHHHHHHHhcccchhh-
Confidence 344588888888877777777765 44 66532 23468888888888654 3345578888888888
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHH
Q 046849 693 CLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAME 744 (760)
Q Consensus 693 ~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~ 744 (760)
..|+|||||||..|.-.+++=|+..||-|++ .|++|.|||+.|.-
T Consensus 98 -ehgntplhyacfwgydqiaedli~~ga~v~i------cnk~g~tpldkakp 142 (448)
T KOG0195|consen 98 -EHGNTPLHYACFWGYDQIAEDLISCGAAVNI------CNKKGMTPLDKAKP 142 (448)
T ss_pred -ccCCCchhhhhhhcHHHHHHHHHhccceeee------cccCCCCchhhhch
Confidence 8888888888888888888888888888877 88888888887754
No 84
>PHA03095 ankyrin-like protein; Provisional
Probab=99.47 E-value=6.7e-14 Score=159.25 Aligned_cols=120 Identities=18% Similarity=0.124 Sum_probs=97.9
Q ss_pred hhhHHHHh--cCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCC
Q 046849 616 SIWEAVKT--QNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNC 693 (760)
Q Consensus 616 ~L~~A~~~--~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~ 693 (760)
.||.++.. ++...+..++..| ++ ++ ..|..|.||||+|+..|+.. ..++..++..|+++|..|
T Consensus 190 ~Lh~~~~~~~~~~~i~~~Ll~~g-~~-~~--~~d~~g~tpLh~Aa~~~~~~---------~~~v~~ll~~g~din~~d-- 254 (471)
T PHA03095 190 LLHHHLQSFKPRARIVRELIRAG-CD-PA--ATDMLGNTPLHSMATGSSCK---------RSLVLPLLIAGISINARN-- 254 (471)
T ss_pred HHHHHHHHCCCcHHHHHHHHHcC-CC-Cc--ccCCCCCCHHHHHHhcCCch---------HHHHHHHHHcCCCCCCcC--
Confidence 37777764 5555566666665 54 44 57888999999999987421 123344588999999999
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|+||||+|+..|+.++|++||++|||+|. +|..|.||||+|+..|+ .+++++|++
T Consensus 255 ~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~------~~~~g~tpl~~A~~~~~---~~~v~~LL~ 311 (471)
T PHA03095 255 RYGQTPLHYAAVFNNPRACRRLIALGADINA------VSSDGNTPLSLMVRNNN---GRAVRAALA 311 (471)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHhCC---HHHHHHHHH
Confidence 9999999999999999999999999999887 99999999999999999 888888864
No 85
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.47 E-value=6.5e-14 Score=159.73 Aligned_cols=121 Identities=22% Similarity=0.166 Sum_probs=97.3
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCC------CccccccccccccchhhhhhcccccCCCCcccCcCCCC
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVG------VDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSN 688 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g------~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn 688 (760)
+.|+.|+..|+.+.+..|+..| ++ ++ ..+..| .||||.|+..|+ ...+++..++++|+++|
T Consensus 178 tpL~~A~~~~~~~iv~~Ll~~g-a~-~~--~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~iv~~Ll~~g~din 244 (480)
T PHA03100 178 TPLHIAVEKGNIDVIKFLLDNG-AD-IN--AGDIETLLFTIFETPLHIAACYNE---------ITLEVVNYLLSYGVPIN 244 (480)
T ss_pred CHHHHHHHhCCHHHHHHHHHcC-CC-cc--CCCCCCCcHHHHHhHHHHHHHhCc---------CcHHHHHHHHHcCCCCC
Confidence 3477788777776666666664 43 33 344455 677777777653 11445666789999999
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 689 DPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 689 ~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.+| ..|.||||+|+..|+.+++++|+++|||+|. +|..|.||||+|+..++ .+++++|++
T Consensus 245 ~~d--~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~------~d~~g~tpl~~A~~~~~---~~iv~~Ll~ 304 (480)
T PHA03100 245 IKD--VYGFTPLHYAVYNNNPEFVKYLLDLGANPNL------VNKYGDTPLHIAILNNN---KEIFKLLLN 304 (480)
T ss_pred CCC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCcHHHHHHHhCC---HHHHHHHHh
Confidence 999 8999999999999999999999999999887 99999999999999999 999998875
No 86
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.46 E-value=4.1e-14 Score=143.45 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=74.2
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCcccccccccc-----ccchhhh---------------------
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQ-----YSEIDFH--------------------- 668 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g-----~~~~~~~--------------------- 668 (760)
+.||++|..+|...|..||..|-.+ +|. .+..|.||+++|+... +..++..
T Consensus 270 TALHYsVSHaNF~VV~~LLDSgvC~-VD~--qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALML 346 (452)
T KOG0514|consen 270 TALHYAVSHANFDVVSILLDSGVCD-VDQ--QNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALML 346 (452)
T ss_pred eeeeeeecccchHHHHHHhccCccc-ccc--cccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhh
Confidence 3499999999999999999888666 665 3445666666554321 0000000
Q ss_pred hh-cccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCCCCCCcHHHHHHHcC
Q 046849 669 KV-KKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQF-GADINMRARPSIKDGGGLSSLERAMEMG 746 (760)
Q Consensus 669 ~~-~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~-GAdvn~~Ad~~~~d~~G~TpL~~A~~~g 746 (760)
.+ -+.+++++.||.+|||||++| .+|.|+|+.||.+||.++|++||.. ++|+. +.|.+|-|+|.+|.+.|
T Consensus 347 AVSHGr~d~vk~LLacgAdVNiQD--dDGSTALMCA~EHGhkEivklLLA~p~cd~s------LtD~DgSTAl~IAleag 418 (452)
T KOG0514|consen 347 AVSHGRVDMVKALLACGADVNIQD--DDGSTALMCAAEHGHKEIVKLLLAVPSCDIS------LTDVDGSTALSIALEAG 418 (452)
T ss_pred hhhcCcHHHHHHHHHccCCCcccc--CCccHHHhhhhhhChHHHHHHHhccCcccce------eecCCCchhhhhHHhcC
Confidence 00 012334444566666666666 5666666666666666666666643 44433 36666666666666666
Q ss_pred CCChHHHHHHh
Q 046849 747 AITDEELFILL 757 (760)
Q Consensus 747 ~~~~~eiv~lL 757 (760)
| .||--+|
T Consensus 419 h---~eIa~ml 426 (452)
T KOG0514|consen 419 H---REIAVML 426 (452)
T ss_pred c---hHHHHHH
Confidence 6 5554444
No 87
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.46 E-value=5.8e-14 Score=165.23 Aligned_cols=121 Identities=22% Similarity=0.201 Sum_probs=105.2
Q ss_pred ccchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCC
Q 046849 612 SRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPG 691 (760)
Q Consensus 612 ~~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~ 691 (760)
..+..++.+...+....+..++..| +|....+..|.||||.|+..|+ ..++++||++|||+++++
T Consensus 506 ~~l~~lhla~~~~~v~~~~~l~~~g----a~v~~~~~r~~TpLh~A~~~g~-----------v~~VkfLLe~gAdv~ak~ 570 (1143)
T KOG4177|consen 506 KGLTPLHLAADEDTVKVAKILLEHG----ANVDLRTGRGYTPLHVAVHYGN-----------VDLVKFLLEHGADVNAKD 570 (1143)
T ss_pred hccchhhhhhhhhhHHHHHHHhhcC----CceehhcccccchHHHHHhcCC-----------chHHHHhhhCCccccccC
Confidence 3445588888888888888888876 5555577789999999999974 567888999999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 692 NCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 692 ~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
..|+||||.||..|+.+|+++|+++||+||+ .|.+|.|||++|+..|+ .+++++|.
T Consensus 571 --~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna------~d~~g~TpL~iA~~lg~---~~~~k~l~ 626 (1143)
T KOG4177|consen 571 --KLGYTPLHQAAQQGHNDIAELLLKHGASVNA------ADLDGFTPLHIAVRLGY---LSVVKLLK 626 (1143)
T ss_pred --CCCCChhhHHHHcChHHHHHHHHHcCCCCCc------ccccCcchhHHHHHhcc---cchhhHHH
Confidence 9999999999999999999999999999988 99999999999999999 77777664
No 88
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.45 E-value=4.3e-13 Score=119.83 Aligned_cols=106 Identities=29% Similarity=0.474 Sum_probs=55.6
Q ss_pred EEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccc
Q 046849 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTV 375 (760)
Q Consensus 296 k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 375 (760)
|+|||+|++....++|++|||+|..+|.|.||+.+.....+.+.. +.....+ ..+.+
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~-----~~~~~~~------------------~~~~~ 57 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIG-----EESSRVI------------------RKGDW 57 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS------------------TT-SB-------------------SEEE
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccc-----cchhceE------------------eeccc
Confidence 689999999876789999999998689999999843322111100 0000000 00000
Q ss_pred c--ccCceecc----CCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 376 D--LRTSAIKM----DGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 376 ~--l~~~~v~~----~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
. .....+.. .+........|.|.||+|+|+|.|+|.+|+.+||++|+.|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 58 SISRRSSRIQGIKDKNPFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp E---GGGT-EEEES-T--SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CcccccccccccccCCcccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 0 00000000 1111223467999999999999999999999999999864
No 89
>PHA02798 ankyrin-like protein; Provisional
Probab=99.45 E-value=1e-13 Score=158.01 Aligned_cols=131 Identities=16% Similarity=0.092 Sum_probs=100.1
Q ss_pred cchhhhHHHHhc---CHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCC
Q 046849 613 RTTSIWEAVKTQ---NLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSND 689 (760)
Q Consensus 613 ~~~~L~~A~~~~---~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~ 689 (760)
+.+.||.|+..+ +.+.+..|+.. |++ +|. .|..|.||||+|+..|+. ...+++..|+++|+|+|.
T Consensus 109 G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gad-vn~--~d~~g~tpL~~a~~~~~~--------~~~~vv~~Ll~~gadin~ 176 (489)
T PHA02798 109 GETPLYCLLSNGYINNLEILLFMIEN-GAD-TTL--LDKDGFTMLQVYLQSNHH--------IDIEIIKLLLEKGVDINT 176 (489)
T ss_pred cCcHHHHHHHcCCcChHHHHHHHHHc-CCC-ccc--cCCCCCcHHHHHHHcCCc--------chHHHHHHHHHhCCCccc
Confidence 444488888875 45556666665 455 554 677899999998887631 125677788999999988
Q ss_pred CCCCCCCChHHHHHHHc----CCHHHHHHHHHcCCCcccc---------------------------------CCCCCCC
Q 046849 690 PGNCLQGGSLLHLACQC----GNLVMLELLIQFGADINMR---------------------------------ARPSIKD 732 (760)
Q Consensus 690 ~~~~~~G~TpLh~Aa~~----g~~~~v~lLL~~GAdvn~~---------------------------------Ad~~~~d 732 (760)
.+ +..|.||||.++.. ++.+++++|+++||+++.. ||+|.+|
T Consensus 177 ~~-~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d 255 (489)
T PHA02798 177 HN-NKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD 255 (489)
T ss_pred cc-CcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence 75 14688999988764 4789999999999988752 5888899
Q ss_pred CCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 733 GGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 733 ~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|.||||+|+..|+ .+++++|++
T Consensus 256 ~~G~TPL~~A~~~~~---~~~v~~LL~ 279 (489)
T PHA02798 256 ELGFNPLYYSVSHNN---RKIFEYLLQ 279 (489)
T ss_pred cCCccHHHHHHHcCc---HHHHHHHHH
Confidence 999999999999999 899999875
No 90
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=99.45 E-value=2.4e-11 Score=121.05 Aligned_cols=193 Identities=13% Similarity=0.241 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-hh-------hhhchHHHHHHHHHhhCCCCCCCccccchhH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEA---------L-GV-------ACSGDSAFADALEAFGGGHDDPVSVSIGGPV 78 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~---------~-~~-------~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~ 78 (760)
-+..+|.+++..+.|++++.+....|++- + ++ -+...+.+.+++...|..+.+... + |.+
T Consensus 18 df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~~~g~~lg~~S~--~-g~a 94 (229)
T cd07594 18 HFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMIEAGNDFGPGTA--Y-GSA 94 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHhhCCCCCc--h-HHH
Confidence 35678899999999999999999988751 1 01 111235677777777755444322 3 479
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHH
Q 046849 79 ISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEED 158 (760)
Q Consensus 79 l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~ 158 (760)
|.+||.+...|...+..+...+...++.||++|+..+|+.+...||+.+..+.+||.+..|+.+. +.++.....+.+
T Consensus 95 L~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~kA---k~~~~~~~~e~e 171 (229)
T cd07594 95 LIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKKA---KSAEAIEQAEQD 171 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997544 334434467888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 159 LQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 159 l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
|..+...|.++.-+....|..|.... .+.+..|..|+.||..||.++++.+.++.+
T Consensus 172 lr~Ae~kF~~~~E~a~~~M~~i~~~~-~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 227 (229)
T cd07594 172 LRVAQSEFDRQAEITKLLLEGISSTH-ANHLRCLRDFVEAQMTYYAQCYQYMDDLQR 227 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763 379999999999999999999999988754
No 91
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.44 E-value=8.1e-14 Score=108.23 Aligned_cols=55 Identities=35% Similarity=0.396 Sum_probs=33.3
Q ss_pred cccCc-CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHH
Q 046849 680 GCQRI-KDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERA 742 (760)
Q Consensus 680 ll~~g-advn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A 742 (760)
||++| +++|..| ..|.||||+||..|+.++|++||++|+|+++ +|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d--~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~------~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQD--KYGNTPLHWAARYGHSEVVRLLLQNGADPNA------KDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---------TTS--HHHH-
T ss_pred CCccCcCCCcCcC--CCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC------CcCCCCCHHHhC
Confidence 36777 8899999 9999999999999999999999999999888 999999999998
No 92
>PHA02946 ankyin-like protein; Provisional
Probab=99.44 E-value=1.7e-13 Score=153.49 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=95.8
Q ss_pred hhHHH--HhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCC
Q 046849 617 IWEAV--KTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCL 694 (760)
Q Consensus 617 L~~A~--~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~ 694 (760)
||.++ ...+.+.+..|+..| ++ +|. .|..|.||||+|+..|+. +++..|+++|||+|.+| .
T Consensus 41 Lh~~~~~~~~~~~iv~~Ll~~G-ad-vn~--~d~~G~TpLh~Aa~~g~~-----------eiv~lLL~~GAdin~~d--~ 103 (446)
T PHA02946 41 LHAYCGIKGLDERFVEELLHRG-YS-PNE--TDDDGNYPLHIASKINNN-----------RIVAMLLTHGADPNACD--K 103 (446)
T ss_pred HHHHHHhcCCCHHHHHHHHHCc-CC-CCc--cCCCCCCHHHHHHHcCCH-----------HHHHHHHHCcCCCCCCC--C
Confidence 55444 344555667777664 65 554 677899999999999753 45556789999999998 9
Q ss_pred CCChHHHHHHHcCC--HHHHHHHHHcCCCcccc---------------------------CCCCCCCCCCCcHHHHHHHc
Q 046849 695 QGGSLLHLACQCGN--LVMLELLIQFGADINMR---------------------------ARPSIKDGGGLSSLERAMEM 745 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~--~~~v~lLL~~GAdvn~~---------------------------Ad~~~~d~~G~TpL~~A~~~ 745 (760)
+|+||||+|+..++ .+++++|+++||++|.. |+++++|..|+||||+|+..
T Consensus 104 ~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~ 183 (446)
T PHA02946 104 QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMS 183 (446)
T ss_pred CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHh
Confidence 99999999988764 78999999999999842 78888888899999888876
Q ss_pred CCCChHHHHHHhhc
Q 046849 746 GAITDEELFILLAE 759 (760)
Q Consensus 746 g~~~~~eiv~lL~~ 759 (760)
++.. .+++++|.+
T Consensus 184 ~~~~-~~~v~~Ll~ 196 (446)
T PHA02946 184 DNPK-ASTISWMMK 196 (446)
T ss_pred cCCC-HHHHHHHHH
Confidence 5521 466777653
No 93
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.43 E-value=1.7e-13 Score=162.79 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=77.2
Q ss_pred hhHHHHhc-CHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCC
Q 046849 617 IWEAVKTQ-NLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQ 695 (760)
Q Consensus 617 L~~A~~~~-~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~ 695 (760)
||.|+..| +.+.+..|+.. +++ +|. .|..|.||||.|+..++ ...++..++++|+++|..| ..
T Consensus 311 Lh~Aa~~g~~~~~v~~Ll~~-gad-in~--~d~~g~TpLh~A~~~~~----------~~~iv~lLl~~gadin~~d--~~ 374 (682)
T PHA02876 311 LYLMAKNGYDTENIRTLIML-GAD-VNA--ADRLYITPLHQASTLDR----------NKDIVITLLELGANVNARD--YC 374 (682)
T ss_pred HHHHHHhCCCHHHHHHHHHc-CCC-CCC--cccCCCcHHHHHHHhCC----------cHHHHHHHHHcCCCCccCC--CC
Confidence 55565555 33333333333 333 332 44455666666655432 1223333456666666666 66
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCcccc----------------------------CCCCCCCCCCCcHHHHHHHcC-
Q 046849 696 GGSLLHLACQCGNLVMLELLIQFGADINMR----------------------------ARPSIKDGGGLSSLERAMEMG- 746 (760)
Q Consensus 696 G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~----------------------------Ad~~~~d~~G~TpL~~A~~~g- 746 (760)
|.||||+|+..|+.+++++|+++||+++.. ||++.+|..|+||||+|+..|
T Consensus 375 G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~ 454 (682)
T PHA02876 375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC 454 (682)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCC
Confidence 666666666666666666666666666542 566779999999999999976
Q ss_pred CCChHHHHHHhhc
Q 046849 747 AITDEELFILLAE 759 (760)
Q Consensus 747 ~~~~~eiv~lL~~ 759 (760)
+ .+++++|++
T Consensus 455 ~---~~iv~lLl~ 464 (682)
T PHA02876 455 K---LDVIEMLLD 464 (682)
T ss_pred c---HHHHHHHHH
Confidence 6 789998875
No 94
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.42 E-value=2.2e-13 Score=155.53 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=94.3
Q ss_pred hhhhHHHHh---cCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCC-C
Q 046849 615 TSIWEAVKT---QNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSND-P 690 (760)
Q Consensus 615 ~~L~~A~~~---~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~-~ 690 (760)
+.|+.|+.. ++.+.+..|+.. |+| +| ...|..|.||||+|+..+. ...+++..|+++|+|+|. .
T Consensus 110 tpL~~a~~~~~~~~~eiv~~Ll~~-Gad-in-~~~d~~g~tpLh~a~~~~~---------~~~~iv~~Ll~~Gadi~~~~ 177 (494)
T PHA02989 110 SPIVCFIYNSNINNCDMLRFLLSK-GIN-VN-DVKNSRGYNLLHMYLESFS---------VKKDVIKILLSFGVNLFEKT 177 (494)
T ss_pred cHHHHHHHhcccCcHHHHHHHHHC-CCC-cc-cccCCCCCCHHHHHHHhcc---------CCHHHHHHHHHcCCCccccc
Confidence 347666544 566666666666 455 52 2356679999998865431 134456677889999887 4
Q ss_pred CCCCCCChHHHHHHHcC----CHHHHHHHHHcCCCcccc--------------------------------CCCCCCCCC
Q 046849 691 GNCLQGGSLLHLACQCG----NLVMLELLIQFGADINMR--------------------------------ARPSIKDGG 734 (760)
Q Consensus 691 ~~~~~G~TpLh~Aa~~g----~~~~v~lLL~~GAdvn~~--------------------------------Ad~~~~d~~ 734 (760)
+ ..|.||||+|+..+ +.++|++|+++||++|.+ ||++.+|..
T Consensus 178 ~--~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~ 255 (494)
T PHA02989 178 S--LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKK 255 (494)
T ss_pred c--ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCC
Confidence 5 78999999887654 889999999999988753 567888888
Q ss_pred CCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 735 GLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 735 G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
|+||||+|+..|+ .+++++|++
T Consensus 256 G~TpL~~Aa~~~~---~~~v~~LL~ 277 (494)
T PHA02989 256 GFNPLLISAKVDN---YEAFNYLLK 277 (494)
T ss_pred CCCHHHHHHHhcC---HHHHHHHHH
Confidence 9999999998888 888888865
No 95
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.40 E-value=8.1e-13 Score=150.93 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=63.4
Q ss_pred ccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 681 CQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 681 l~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+..|+++|.+| ..|+||||+||..|+.++|++||++|||+|. +|..|.||||+|+..|+ .+++++|++
T Consensus 243 l~~~advn~~d--~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~------~d~~G~TpL~~A~~~~~---~~iv~~LL~ 310 (494)
T PHA02989 243 ILKYIKINKKD--KKGFNPLLISAKVDNYEAFNYLLKLGDDIYN------VSKDGDTVLTYAIKHGN---IDMLNRILQ 310 (494)
T ss_pred HHhCCCCCCCC--CCCCCHHHHHHHhcCHHHHHHHHHcCCCccc------cCCCCCCHHHHHHHcCC---HHHHHHHHh
Confidence 45689999998 8999999999999999999999999999888 99999999999999999 899988864
No 96
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.40 E-value=1.6e-10 Score=114.28 Aligned_cols=189 Identities=20% Similarity=0.360 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------chHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACS---------GDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAF 86 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l 86 (760)
-+..+|.+++.....+++|.+.+..|++.+.+-.. ....+..++...|..+.+... + |.+|..||.+.
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~--~-G~aL~~~G~a~ 84 (215)
T cd07593 8 EFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSE--Y-GSCLSKLGRAH 84 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCCh--H-HHHHHHHHHHH
Confidence 35678999999999999999999999997766531 245677777776655533322 3 47999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHH
Q 046849 87 RELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAF 166 (760)
Q Consensus 87 ~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f 166 (760)
..|......+...+...++.||++|+. +++.+...||+.+..+-+||.+.+|+.+.++. . ...+.+|..+...|
T Consensus 85 ~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~---~--~~~eeElr~Ae~kf 158 (215)
T cd07593 85 CKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAALTKSQKAKKE---D--SRLEEELRRAKAKY 158 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c--hhHHHHHHHHHHHH
Confidence 999999999999999999999999995 89999999999999999999999998766442 1 35778899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 167 EKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIE 214 (760)
Q Consensus 167 ~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~ 214 (760)
.++.-+....|..+....- +.+..|..|+.||..||+++.+++.++.
T Consensus 159 ees~E~a~~~M~~i~~~e~-e~~~~L~~lv~AQl~Yh~q~~e~L~~l~ 205 (215)
T cd07593 159 EESSEDVEARMVAIKESEA-DQYRDLTDLLDAELDYHQQSLDVLREVR 205 (215)
T ss_pred HHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987644 8999999999999999999999987754
No 97
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.39 E-value=3.7e-13 Score=155.76 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHH
Q 046849 707 GNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAM 743 (760)
Q Consensus 707 g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~ 743 (760)
|+.++|++||++||++|. +|..|+||||+|+
T Consensus 295 g~leiVklLLe~GAdIN~------kD~~G~TPLH~Aa 325 (764)
T PHA02716 295 IDISVVYSFLQPGVKLHY------KDSAGRTCLHQYI 325 (764)
T ss_pred CCHHHHHHHHhCCCceec------cCCCCCCHHHHHH
Confidence 444555555555555444 5555555555544
No 98
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.39 E-value=4.3e-13 Score=152.97 Aligned_cols=118 Identities=25% Similarity=0.234 Sum_probs=100.5
Q ss_pred hhhH-----HHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccc--cccccchhhhhhcccccCCCCcccCcCCCC
Q 046849 616 SIWE-----AVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVD--NTQYSEIDFHKVKKEENNGPAGCQRIKDSN 688 (760)
Q Consensus 616 ~L~~-----A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~--~~g~~~~~~~~~~~~~~~~~~ll~~gadvn 688 (760)
.|+. |+..++.+.+..|+..| ++ ++ ..|..|.||||+|+ ..|+ .+++..++++|+++|
T Consensus 71 ~L~~~~~~~a~~~~~~~iv~~Ll~~g-a~-i~--~~d~~g~tpL~~A~~~~~~~-----------~~iv~~Ll~~g~~~~ 135 (480)
T PHA03100 71 PLHYLSNIKYNLTDVKEIVKLLLEYG-AN-VN--APDNNGITPLLYAISKKSNS-----------YSIVEYLLDNGANVN 135 (480)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHCC-CC-CC--CCCCCCCchhhHHHhcccCh-----------HHHHHHHHHcCCCCC
Confidence 3888 99999988877777775 55 44 46778999999999 7754 445566788999999
Q ss_pred CCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 689 DPGNCLQGGSLLHLACQCG--NLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 689 ~~~~~~~G~TpLh~Aa~~g--~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..+ ..|.||||+|+..| +.+++++|+++|+++|. +|..|.||||+|+..|+ .+++++|++
T Consensus 136 ~~~--~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~------~d~~g~tpL~~A~~~~~---~~iv~~Ll~ 197 (480)
T PHA03100 136 IKN--SDGENLLHLYLESNKIDLKILKLLIDKGVDINA------KNRYGYTPLHIAVEKGN---IDVIKFLLD 197 (480)
T ss_pred ccC--CCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc------ccCCCCCHHHHHHHhCC---HHHHHHHHH
Confidence 988 89999999999999 99999999999999887 88999999999999999 899999875
No 99
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.39 E-value=3.2e-12 Score=110.96 Aligned_cols=97 Identities=27% Similarity=0.360 Sum_probs=70.7
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
.+|||+|.|.+++ +.|.|+||.+ ++-+||+.+..+... .-...+
T Consensus 2 ~ikEG~L~K~~~k--~~~~R~~FLF-nD~LlY~~~~~~~~~---------------------------------~y~~~~ 45 (99)
T cd01220 2 FIRQGCLLKLSKK--GLQQRMFFLF-SDLLLYTSKSPTDQN---------------------------------SFRILG 45 (99)
T ss_pred eeeEEEEEEEeCC--CCceEEEEEc-cceEEEEEeecCCCc---------------------------------eEEEEE
Confidence 4789999999753 3566555555 477776655432210 011256
Q ss_pred cccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.++|....|....++.+.++||+|.++.++|+|+|.|++|+.+||.+|+.+|.
T Consensus 46 ~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 46 HLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 77888887775333345689999999999999999999999999999999985
No 100
>PHA03095 ankyrin-like protein; Provisional
Probab=99.38 E-value=3.9e-13 Score=152.94 Aligned_cols=122 Identities=21% Similarity=0.172 Sum_probs=98.9
Q ss_pred hhhhHHHHhc---CHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCC
Q 046849 615 TSIWEAVKTQ---NLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPG 691 (760)
Q Consensus 615 ~~L~~A~~~~---~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~ 691 (760)
+.||.|+..+ +.+.+..|+.. |++ +|. .+..|.||||+|+..|+ ..+++..++++|+++|..+
T Consensus 49 t~Lh~a~~~~~~~~~~iv~~Ll~~-Gad-in~--~~~~g~TpLh~A~~~~~----------~~~iv~lLl~~ga~in~~~ 114 (471)
T PHA03095 49 TPLHLYLHYSSEKVKDIVRLLLEA-GAD-VNA--PERCGFTPLHLYLYNAT----------TLDVIKLLIKAGADVNAKD 114 (471)
T ss_pred CHHHHHHHhcCCChHHHHHHHHHC-CCC-CCC--CCCCCCCHHHHHHHcCC----------cHHHHHHHHHcCCCCCCCC
Confidence 3499999988 76666666666 466 665 56689999999998863 3456777899999999998
Q ss_pred CCCCCChHHHHHH--HcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 692 NCLQGGSLLHLAC--QCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 692 ~~~~G~TpLh~Aa--~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|.||||+|+ ..++.+++++|+++||+++. +|..|.||||+|+..++ ...+++++|++
T Consensus 115 --~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~------~d~~g~tpL~~a~~~~~-~~~~iv~~Ll~ 175 (471)
T PHA03095 115 --KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA------LDLYGMTPLAVLLKSRN-ANVELLRLLID 175 (471)
T ss_pred --CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCC-CCHHHHHHHHH
Confidence 88999999999 56688999999999999887 99999999999998773 22688888865
No 101
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.38 E-value=3.2e-12 Score=113.92 Aligned_cols=101 Identities=16% Similarity=0.287 Sum_probs=75.0
Q ss_pred EEEEEEeeC---------CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCC
Q 046849 296 KQGYLLKRS---------SNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFN 366 (760)
Q Consensus 296 k~G~L~K~~---------~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (760)
|+|+|..+- ...+..|+++||||+ ++.|++|+++.....+ ..
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~-g~~L~~yKDe~~~~~~----------------------------~~ 52 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILR-GLVLYLQKDEHKPGKS----------------------------LS 52 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEE-CCEEEEEccCcccccc----------------------------cc
Confidence 678887432 112458999999998 7889999887532111 00
Q ss_pred CCccccccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 367 EDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 367 ~~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
+ ......|.|..|...+..+...|++.|.|.+++ +.|.|||.+++||+.||.+|+.+.+
T Consensus 53 ~-~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 53 E-TELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred c-ccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 0 011246777777766667778899999999987 8899999999999999999998865
No 102
>PHA02917 ankyrin-like protein; Provisional
Probab=99.38 E-value=4.3e-13 Score=156.05 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=96.4
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccc--cccccchhhhhhcccccCCCCcccCcCCCCCCCCC-
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVD--NTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNC- 693 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~--~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~- 693 (760)
++.|+..++.+.+..||..| +| +| ..|..|.||||.|+ ..| ..++++.|+++|||+|..|..
T Consensus 107 ~~~a~~~~~~e~vk~Ll~~G-ad-in--~~d~~g~T~L~~~~a~~~~-----------~~eivklLi~~Ga~vn~~d~~~ 171 (661)
T PHA02917 107 SYMKSKNVDVDLIKVLVEHG-FD-LS--VKCENHRSVIENYVMTDDP-----------VPEIIDLFIENGCSVLYEDEDD 171 (661)
T ss_pred HHHHhhcCCHHHHHHHHHcC-CC-CC--ccCCCCccHHHHHHHccCC-----------CHHHHHHHHHcCCCcccccccc
Confidence 56788888988888888775 55 55 46778999999654 344 455677789999999976521
Q ss_pred CCC-----------ChHHHHHHH-----------cCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChH
Q 046849 694 LQG-----------GSLLHLACQ-----------CGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDE 751 (760)
Q Consensus 694 ~~G-----------~TpLh~Aa~-----------~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~ 751 (760)
..| .||||+|+. .|+.++|++|+.+|||||. +|.+|.||||+|+..|+.+ .
T Consensus 172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~------~d~~G~TpLh~A~~~g~~~-~ 244 (661)
T PHA02917 172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS------IDKNYCTALQYYIKSSHID-I 244 (661)
T ss_pred ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc------CCCCCCcHHHHHHHcCCCc-H
Confidence 234 599999986 5689999999999999998 9999999999999999833 3
Q ss_pred HHHHHhhc
Q 046849 752 ELFILLAE 759 (760)
Q Consensus 752 eiv~lL~~ 759 (760)
++|++|.+
T Consensus 245 eivk~Li~ 252 (661)
T PHA02917 245 DIVKLLMK 252 (661)
T ss_pred HHHHHHHh
Confidence 78888864
No 103
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.37 E-value=2.5e-13 Score=111.13 Aligned_cols=101 Identities=21% Similarity=0.141 Sum_probs=85.4
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
+..++++|.+..|++.+..| .+ ||... .|++|||+||-+|+. +++.+++..||+|+.+| +.|
T Consensus 6 ~~W~vkNG~~DeVk~~v~~g-~n-Vn~~~---ggR~plhyAAD~GQl-----------~ilefli~iGA~i~~kD--Kyg 67 (117)
T KOG4214|consen 6 VAWNVKNGEIDEVKQSVNEG-LN-VNEIY---GGRTPLHYAADYGQL-----------SILEFLISIGANIQDKD--KYG 67 (117)
T ss_pred HhhhhccCcHHHHHHHHHcc-cc-HHHHh---CCcccchHhhhcchH-----------HHHHHHHHhccccCCcc--ccC
Confidence 66789999999999999997 55 66443 589999999999853 34556688999999999 999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHH
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLER 741 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~ 741 (760)
-|||.-|+.-||.+||++||++|||-.. +-.+|.+.+..
T Consensus 68 ITPLLsAvwEGH~~cVklLL~~GAdrt~------~~PdG~~~~ea 106 (117)
T KOG4214|consen 68 ITPLLSAVWEGHRDCVKLLLQNGADRTI------HAPDGTALIEA 106 (117)
T ss_pred CcHHHHHHHHhhHHHHHHHHHcCcccce------eCCCchhHHhh
Confidence 9999999999999999999999998655 67778776653
No 104
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=99.37 E-value=2.7e-10 Score=112.48 Aligned_cols=189 Identities=14% Similarity=0.276 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhh---h-----h-hchHHHHHHHHHhhCCCCCCCccc
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTE-------------ALGV---A-----C-SGDSAFADALEAFGGGHDDPVSVS 73 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~-------------~~~~---~-----~-~~~~~~~~~l~~~~~~~~d~~~~~ 73 (760)
.+..+|.+++.++.|+.+|.+....|++ ++.+ . + .....+.+++...|..+.+...
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~-- 85 (223)
T cd07615 8 DFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEEST-- 85 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCCCh--
Confidence 4678899999999999999999999887 3332 1 1 1125677777777754444332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHH
Q 046849 74 IGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVA 153 (760)
Q Consensus 74 ~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~ 153 (760)
+ |.+|.+||.+.+.|...+..+...+...++.||++|...+|+.+...||+.+..+-+||..-.|. .+ .
T Consensus 86 ~-G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~---~k--~----- 154 (223)
T cd07615 86 F-GNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQ---GK--I----- 154 (223)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC--C-----
Confidence 3 47999999999999999999999999999999999999999999999999999999999865554 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 046849 154 ELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQ 219 (760)
Q Consensus 154 e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~ 219 (760)
.+.++..++..|.++.=+....|..+... ..+.+..|..|+.+|..|++++.+++.++.+.+++
T Consensus 155 -~~eE~~~A~~kfees~E~a~~~M~n~le~-e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 155 -PDEEIRQAVEKFEESKELAERSMFNFLEN-DVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15577788889999999999999988876 45899999999999999999999999988887663
No 105
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.37 E-value=2.9e-10 Score=113.20 Aligned_cols=188 Identities=17% Similarity=0.345 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhh--------h-hchHHHHHHHHHhhCCCCCCCccc
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTE-------------ALGVA--------C-SGDSAFADALEAFGGGHDDPVSVS 73 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~-------------~~~~~--------~-~~~~~~~~~l~~~~~~~~d~~~~~ 73 (760)
-+..+|.+++..+.|+++|.+....|++ ++++. + .....+.+++...|..+.++..
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S~-- 85 (223)
T cd07592 8 EFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDSN-- 85 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCCh--
Confidence 4577899999999999999999999882 22222 1 1125677777777755544332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHH
Q 046849 74 IGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVA 153 (760)
Q Consensus 74 ~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~ 153 (760)
+ |.+|..||.+...|...+..+...+...++.||++|+..+|+.+...||+.+..+-+||.+..|+. |.
T Consensus 86 ~-G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~---k~------- 154 (223)
T cd07592 86 F-GQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQG---KG------- 154 (223)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC-------
Confidence 3 479999999999999999999999999999999999999999999999999999999998776642 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046849 154 ELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVH 218 (760)
Q Consensus 154 e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~ 218 (760)
.+.+|..+...|.++.=+....|..+... ..+.+..|..|+.||..||+++.+.+.++.+.+.
T Consensus 155 -~eeEl~~Ae~kfe~s~E~a~~~M~~il~~-e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~ 217 (223)
T cd07592 155 -PDEELKQAEEKFEESKELAENSMFNLLEN-DVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQ 217 (223)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999988874 3589999999999999999999999887766554
No 106
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.36 E-value=1.1e-12 Score=154.63 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=93.7
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhc----------------------ccc
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVK----------------------KEE 674 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~----------------------~~~ 674 (760)
+|.|+..|....+..++...+.+ +|... ..|.||||+|+..|+.+.+.+... +.+
T Consensus 444 lhvaa~~g~~~~~~~~l~~~g~~-~n~~s--~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v 520 (1143)
T KOG4177|consen 444 LHVAAKKGRYLQIARLLLQYGAD-PNAVS--KQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTV 520 (1143)
T ss_pred hhhhhhcccHhhhhhhHhhcCCC-cchhc--cccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhH
Confidence 66666666333333333333344 55433 346677777776666554422111 122
Q ss_pred cCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHH
Q 046849 675 NNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELF 754 (760)
Q Consensus 675 ~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv 754 (760)
.....++++|+++++++ ..|.||||.||..|+..+|++||++|||+++ +|+.|+||||.|+..|+ .+++
T Consensus 521 ~~~~~l~~~ga~v~~~~--~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~a------k~~~G~TPLH~Aa~~G~---~~i~ 589 (1143)
T KOG4177|consen 521 KVAKILLEHGANVDLRT--GRGYTPLHVAVHYGNVDLVKFLLEHGADVNA------KDKLGYTPLHQAAQQGH---NDIA 589 (1143)
T ss_pred HHHHHHhhcCCceehhc--ccccchHHHHHhcCCchHHHHhhhCCccccc------cCCCCCChhhHHHHcCh---HHHH
Confidence 23333488999999999 8999999999999999999999999999988 99999999999999999 9999
Q ss_pred HHhhc
Q 046849 755 ILLAE 759 (760)
Q Consensus 755 ~lL~~ 759 (760)
++|++
T Consensus 590 ~LLlk 594 (1143)
T KOG4177|consen 590 ELLLK 594 (1143)
T ss_pred HHHHH
Confidence 99976
No 107
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.36 E-value=8.5e-13 Score=152.80 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=95.5
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
++.|+..|+.+.+..||..| ++ +|. .|..|.||||+|+..+. ...+++..|+++|+|+|.+| ..|
T Consensus 288 ~i~AA~~g~leiVklLLe~G-Ad-IN~--kD~~G~TPLH~Aaa~~~---------~~~eIVklLLe~GADIN~kD--~~G 352 (764)
T PHA02716 288 YITLARNIDISVVYSFLQPG-VK-LHY--KDSAGRTCLHQYILRHN---------ISTDIIKLLHEYGNDLNEPD--NIG 352 (764)
T ss_pred HHHHHHcCCHHHHHHHHhCC-Cc-eec--cCCCCCCHHHHHHHHhC---------CCchHHHHHHHcCCCCccCC--CCC
Confidence 34578899988888888775 55 554 67789999999865431 23456777899999999999 899
Q ss_pred ChHHHHHHH--------------cCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHH----HHHcCCCChHHHHHHhh
Q 046849 697 GSLLHLACQ--------------CGNLVMLELLIQFGADINMRARPSIKDGGGLSSLER----AMEMGAITDEELFILLA 758 (760)
Q Consensus 697 ~TpLh~Aa~--------------~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~----A~~~g~~~~~eiv~lL~ 758 (760)
+||||+|+. .|+.++|++|+++||+++. +|..|+||||. |...++ .+++++|+
T Consensus 353 ~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~------kn~~G~TPLh~y~~~a~n~~~---~dIvklLi 423 (764)
T PHA02716 353 NTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA------VNCLGYTPLTSYICTAQNYMY---YDIIDCLI 423 (764)
T ss_pred CCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC------cCCCCCChHHHHHHHHHhcCh---HHHHHHHH
Confidence 999999875 3789999999999999888 99999999994 223456 88998886
Q ss_pred c
Q 046849 759 E 759 (760)
Q Consensus 759 ~ 759 (760)
+
T Consensus 424 s 424 (764)
T PHA02716 424 S 424 (764)
T ss_pred h
Confidence 4
No 108
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.36 E-value=1.1e-12 Score=156.08 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=101.8
Q ss_pred cchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCC
Q 046849 613 RTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGN 692 (760)
Q Consensus 613 ~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~ 692 (760)
+.+.||.|+..++...+..+|...+++ +|. .|..|.||||+|+..|. ..+.+..++..|+++|..+
T Consensus 273 g~TpLh~Aa~~~~~~~iv~lLl~~gad-in~--~d~~g~TpLh~Aa~~g~----------~~~~v~~Ll~~gadin~~d- 338 (682)
T PHA02876 273 KNTPLHHASQAPSLSRLVPKLLERGAD-VNA--KNIKGETPLYLMAKNGY----------DTENIRTLIMLGADVNAAD- 338 (682)
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHCCCC-CCC--cCCCCCCHHHHHHHhCC----------CHHHHHHHHHcCCCCCCcc-
Confidence 344499999999987666666655666 554 66789999999998863 2345566789999999998
Q ss_pred CCCCChHHHHHHHc-CCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 693 CLQGGSLLHLACQC-GNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 693 ~~~G~TpLh~Aa~~-g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|+||||+|+.. ++.+++++|+..|+++|. +|..|.||||+|+..|+ .+++++|++
T Consensus 339 -~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~------~d~~G~TpLh~Aa~~~~---~~iv~~Ll~ 396 (682)
T PHA02876 339 -RLYITPLHQASTLDRNKDIVITLLELGANVNA------RDYCDKTPIHYAAVRNN---VVIINTLLD 396 (682)
T ss_pred -cCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc------CCCCCCCHHHHHHHcCC---HHHHHHHHH
Confidence 8999999999985 578999999999999887 99999999999999999 899998875
No 109
>PHA02798 ankyrin-like protein; Provisional
Probab=99.35 E-value=9e-13 Score=150.36 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred hhHHHHh-----cCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCC
Q 046849 617 IWEAVKT-----QNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPG 691 (760)
Q Consensus 617 L~~A~~~-----~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~ 691 (760)
|+.++.+ +..+.+..|+.. |+| +|. .|..|.||||+|+..+.. +..+++..++++|||+|..|
T Consensus 75 L~~~~~n~~~~~~~~~iv~~Ll~~-Gad-iN~--~d~~G~TpLh~a~~~~~~--------~~~~iv~~Ll~~Gadvn~~d 142 (489)
T PHA02798 75 LCTILSNIKDYKHMLDIVKILIEN-GAD-INK--KNSDGETPLYCLLSNGYI--------NNLEILLFMIENGADTTLLD 142 (489)
T ss_pred HHHHHHhHHhHHhHHHHHHHHHHC-CCC-CCC--CCCCcCcHHHHHHHcCCc--------ChHHHHHHHHHcCCCccccC
Confidence 5555542 333334444443 454 544 455567777766665421 23455556666777777666
Q ss_pred CCCCCChHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCC-CCCCCcHHHHHHHcCC-CChHHHHHHhhc
Q 046849 692 NCLQGGSLLHLACQCGN---LVMLELLIQFGADINMRARPSIK-DGGGLSSLERAMEMGA-ITDEELFILLAE 759 (760)
Q Consensus 692 ~~~~G~TpLh~Aa~~g~---~~~v~lLL~~GAdvn~~Ad~~~~-d~~G~TpL~~A~~~g~-~~~~eiv~lL~~ 759 (760)
..|.||||+|+..|+ .+++++|+++||++|. . +..|.||||.++..+. ....+++++|++
T Consensus 143 --~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~------~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~ 207 (489)
T PHA02798 143 --KDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINT------HNNKEKYDTLHCYFKYNIDRIDADILKLFVD 207 (489)
T ss_pred --CCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccc------ccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence 667777777776666 6677777777766665 4 3456677776665442 123566666654
No 110
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=99.35 E-value=3.1e-10 Score=112.18 Aligned_cols=188 Identities=15% Similarity=0.288 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----------hh---------hhhchHHHHHHHHHhhCCCCCCCccc
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEA---L----------GV---------ACSGDSAFADALEAFGGGHDDPVSVS 73 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~---~----------~~---------~~~~~~~~~~~l~~~~~~~~d~~~~~ 73 (760)
.+..+|..++.++.|+.++++....|.+- . .+ .-.....+.+++...|....++..
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~-- 85 (223)
T cd07614 8 DFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESN-- 85 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCCh--
Confidence 56789999999999999999999988762 1 11 001135666777666654444332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHH
Q 046849 74 IGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVA 153 (760)
Q Consensus 74 ~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~ 153 (760)
+ |.+|.+||.+...|...+..+...+...++.||++|+..+|+.+...||+.+..+-+||.+..|+ .| .+
T Consensus 86 ~-G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~---~k--~~---- 155 (223)
T cd07614 86 F-GDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQ---GK--IP---- 155 (223)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC--Cc----
Confidence 3 47999999999999999999999999999999999999999999999999999999999976664 21 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046849 154 ELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVH 218 (760)
Q Consensus 154 e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~ 218 (760)
+++|..+...|.++.=+....|..+.... .+.+..|..|+.+|..|++++++++.++.+.+.
T Consensus 156 --eeelr~a~ekFees~E~a~~~M~~il~~e-~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 156 --DEELRQAMEKFEESKEVAETSMHNLLETD-IEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777799999999999999998774 489999999999999999999999877655443
No 111
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.35 E-value=3.2e-12 Score=115.92 Aligned_cols=103 Identities=22% Similarity=0.418 Sum_probs=66.6
Q ss_pred EEEEEEeeCCCCC-----------------CCceeeEEEEecCceEEEEecCCC-CCCCCCcccCCCCCCCCCccccccc
Q 046849 296 KQGYLLKRSSNLR-----------------GDWKRRFFVLNSQGTLYYYRNKGI-KSMGSHHHYAGSADHNGGVFSRFRS 357 (760)
Q Consensus 296 k~G~L~K~~~~~~-----------------~~W~rR~fvl~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 357 (760)
||||+.||+++.. ..|++|||+|+ ++.|.||+++.. .+.|.+..- ..+....|.
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr-~s~L~Y~~~~~~~~~~~vil~D-~~f~v~~~~------ 72 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVK-ESFLAYMDDPSSAQILDVILFD-VDFKVNGGG------ 72 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEe-CCEEEEEcCCCCCceeeEEEEc-CCccEEeCC------
Confidence 6899999986521 16999999999 788888887765 444422110 000000000
Q ss_pred cccCCCCCCCCccccccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 358 RHYRSSSFNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 358 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
...+.+.. ...+...+++.|.|.+++|+|.|.|+|+.++.+||++|+.|
T Consensus 73 --------------~~~~~~~~----~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 73 --------------KEDISLAV----ELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred --------------cccccccc----cccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 00000000 00122456799999999999999999999999999999864
No 112
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.35 E-value=4e-13 Score=131.91 Aligned_cols=111 Identities=20% Similarity=0.180 Sum_probs=90.9
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
++.-++.||.-.|...|.....| .|. .|..|.+|||+||..|+.. ++..+|.+|+.||..| ...
T Consensus 4 if~wcregna~qvrlwld~tehd-ln~--gddhgfsplhwaakegh~a-----------ivemll~rgarvn~tn--mgd 67 (448)
T KOG0195|consen 4 IFGWCREGNAFQVRLWLDDTEHD-LNV--GDDHGFSPLHWAAKEGHVA-----------IVEMLLSRGARVNSTN--MGD 67 (448)
T ss_pred hhhhhhcCCeEEEEEEecCcccc-ccc--ccccCcchhhhhhhcccHH-----------HHHHHHhccccccccc--CCC
Confidence 34445566655555555555555 554 7789999999999998754 3445689999999999 888
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCC
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAIT 749 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~ 749 (760)
.||||+||.+||.++|+.||+..||||+ .|..|.||||||+..|.-.
T Consensus 68 dtplhlaaahghrdivqkll~~kadvna------vnehgntplhyacfwgydq 114 (448)
T KOG0195|consen 68 DTPLHLAAAHGHRDIVQKLLSRKADVNA------VNEHGNTPLHYACFWGYDQ 114 (448)
T ss_pred CcchhhhhhcccHHHHHHHHHHhcccch------hhccCCCchhhhhhhcHHH
Confidence 9999999999999999999999999998 9999999999999988644
No 113
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.34 E-value=4.3e-13 Score=115.34 Aligned_cols=87 Identities=28% Similarity=0.352 Sum_probs=74.0
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
|+.|++.|+.+.+..++..+ .+ ++. |.||||+|+..|+ .++++.++++|+++|..| .+|
T Consensus 1 L~~A~~~~~~~~~~~ll~~~-~~-~~~------~~~~l~~A~~~~~-----------~~~~~~Ll~~g~~~~~~~--~~g 59 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKG-AD-INL------GNTALHYAAENGN-----------LEIVKLLLENGADINSQD--KNG 59 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTT-ST-TTS------SSBHHHHHHHTTT-----------HHHHHHHHHTTTCTT-BS--TTS
T ss_pred CHHHHHcCCHHHHHHHHHCc-CC-CCC------CCCHHHHHHHcCC-----------HHHHHHHHHhcccccccC--CCC
Confidence 68899999999999999965 44 332 8899999999974 445566789999999998 899
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINM 724 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~ 724 (760)
+||||+|+..|+.+++++|+++|+++|.
T Consensus 60 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 60 NTALHYAAENGNLEIVKLLLEHGADVNI 87 (89)
T ss_dssp SBHHHHHHHTTHHHHHHHHHHTTT-TTS
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999887
No 114
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.34 E-value=9.7e-13 Score=146.09 Aligned_cols=122 Identities=23% Similarity=0.181 Sum_probs=97.5
Q ss_pred chhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCccc--CcCCCCCCC
Q 046849 614 TTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQ--RIKDSNDPG 691 (760)
Q Consensus 614 ~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~--~gadvn~~~ 691 (760)
-+.||.|++.|..+.+..|+..| ++ +|. +..++.||||.||.+|....+. .||+ .-...|..|
T Consensus 274 ~tpLH~a~r~G~~~svd~Ll~~G-a~-I~~--kn~d~~spLH~AA~yg~~ntv~-----------rLL~~~~~rllne~D 338 (929)
T KOG0510|consen 274 CTPLHYAARQGGPESVDNLLGFG-AS-INS--KNKDEESPLHFAAIYGRINTVE-----------RLLQESDTRLLNESD 338 (929)
T ss_pred CchHHHHHHcCChhHHHHHHHcC-Cc-ccc--cCCCCCCchHHHHHcccHHHHH-----------HHHhCcCcccccccc
Confidence 45599999999999999999886 55 554 5567999999999998644332 1222 233566777
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 692 NCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 692 ~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
..|.||||+|+..||-.++++||+.||+.+. -.-.|.+|.||||.|+..|+ ...|++|.
T Consensus 339 --~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~---~~e~D~dg~TaLH~Aa~~g~---~~av~~Li 397 (929)
T KOG0510|consen 339 --LHGMTPLHLAAKSGHDRVVQLLLNKGALFLN---MSEADSDGNTALHLAAKYGN---TSAVQKLI 397 (929)
T ss_pred --ccCCCchhhhhhcCHHHHHHHHHhcChhhhc---ccccccCCchhhhHHHHhcc---HHHHHHHH
Confidence 8999999999999999999999999999762 00149999999999999999 88888775
No 115
>PHA02741 hypothetical protein; Provisional
Probab=99.34 E-value=1.3e-12 Score=126.91 Aligned_cols=98 Identities=20% Similarity=0.198 Sum_probs=79.0
Q ss_pred CCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCC
Q 046849 646 DDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGN----LVMLELLIQFGAD 721 (760)
Q Consensus 646 ~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~----~~~v~lLL~~GAd 721 (760)
.+..|.||||+|+..|+..++..... .. .....|+++|.+| ..|+||||+|+..|+ .+++++|+.+|++
T Consensus 17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~----~~-~~~~~ga~in~~d--~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad 89 (169)
T PHA02741 17 KNSEGENFFHEAARCGCFDIIARFTP----FI-RGDCHAAALNATD--DAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD 89 (169)
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHH----Hh-ccchhhhhhhccC--CCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence 45579999999999987654432100 00 0124688999998 899999999999999 5899999999999
Q ss_pred ccccCCCCCCCC-CCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 722 INMRARPSIKDG-GGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 722 vn~~Ad~~~~d~-~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+|. +|. .|+||||+|+..++ .+++++|+.
T Consensus 90 in~------~~~~~g~TpLh~A~~~~~---~~iv~~Ll~ 119 (169)
T PHA02741 90 INA------QEMLEGDTALHLAAHRRD---HDLAEWLCC 119 (169)
T ss_pred CCC------CCcCCCCCHHHHHHHcCC---HHHHHHHHh
Confidence 987 885 99999999999999 999998863
No 116
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.34 E-value=3.8e-10 Score=114.43 Aligned_cols=202 Identities=18% Similarity=0.284 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-----hhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALG--VA-----CSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~--~~-----~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
-+..+|.+++.++.|+.+++|....+.+... .. ......++.++...+..+.++. .+ +.+|..||.+.+.
T Consensus 16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~Lg~~M~~~g~~l~~~s--~l-g~~L~~~g~a~~~ 92 (244)
T cd07595 16 ELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGLAQSMLESSKELPDDS--LL-GKVLKLCGEAQNT 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHHHHHHHHHHHhcCCCC--hH-HHHHHHHHHHHHH
Confidence 4566899999999999999996444322101 10 1123466666666654443332 23 4799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----hhhHHHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR----DDIVAELEEDLQNSKS 164 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~----~~~~~e~~~~l~~~Rk 164 (760)
|...+..+...+...|+.||++|+..+|+.+...||+.++.+.+||.+..|+.+..|... +........++..+..
T Consensus 93 ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~ 172 (244)
T cd07595 93 LARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAEL 172 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999976654311 2223345778888999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 046849 165 AFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQVL 221 (760)
Q Consensus 165 ~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l~ 221 (760)
.|.++.-+++..|..+-.+ ..+++..+..|+.+|..|++++++++..+-|.++...
T Consensus 173 k~e~~~e~~~~~M~~~l~~-E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~ 228 (244)
T cd07595 173 KLEQCRDALATDMYEFLAK-EAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQI 228 (244)
T ss_pred HHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 4589999999999999999999999988877776654
No 117
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=4.5e-12 Score=113.42 Aligned_cols=94 Identities=20% Similarity=0.336 Sum_probs=68.1
Q ss_pred EEEEEe-eCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccc
Q 046849 297 QGYLLK-RSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTV 375 (760)
Q Consensus 297 ~G~L~K-~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 375 (760)
.|||.- ...+..++|+||||+|. ++.|+||+.+.+.. ...|.+.|
T Consensus 4 ~GfL~~~q~~~~~k~W~RRWFvL~-g~~L~y~k~p~d~~---------------------------------~~~Plg~I 49 (122)
T cd01263 4 HGFLTMFEDTSGFGAWHRRWCALE-GGEIKYWKYPDDEK---------------------------------RKGPTGLI 49 (122)
T ss_pred ceeEEEEeccCCCCCceEEEEEEe-CCEEEEEcCCCccc---------------------------------cCCceEEE
Confidence 699984 43345569999999999 89999998765511 12345678
Q ss_pred cccCceeccCC----CCCCCCceEEEEec--C-----------------ce-eEEEcCCHHHHHHHHHHHHHH
Q 046849 376 DLRTSAIKMDG----EDTDLRLCFRIISP--V-----------------KT-YTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 376 ~l~~~~v~~~~----~~~~~~~~F~i~~~--~-----------------~~-~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
+|..|.+.... +...|++.|.|... . ++ +.|.|+|.+||++||.+|+.+
T Consensus 50 ~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 50 DLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 88887765421 34568899998542 1 33 679999999999999999853
No 118
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.33 E-value=7.3e-12 Score=111.07 Aligned_cols=94 Identities=19% Similarity=0.371 Sum_probs=66.1
Q ss_pred EEEEEeeC-----C--CCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCc
Q 046849 297 QGYLLKRS-----S--NLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDS 369 (760)
Q Consensus 297 ~G~L~K~~-----~--~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (760)
+|||..+. + ...+.|++|||+|. ++.|+||+++...... .
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~-~~~L~~ykd~~~~~~~--------------------------------~ 48 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLC-GQSLSFYKDEKMAAEN--------------------------------V 48 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEe-CCEEEEEecCcccccC--------------------------------C
Confidence 67777331 1 13458999999998 7889999876432100 0
Q ss_pred cccccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHH
Q 046849 370 LNCRTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 370 ~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
.....|++..+.+....+...++++|.|.+++ ++|+|||+|++|+.+||.+|+.
T Consensus 49 ~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 49 HGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 00124566666666544445678999998766 8999999999999999999975
No 119
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=99.33 E-value=3.2e-10 Score=112.35 Aligned_cols=192 Identities=13% Similarity=0.208 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------------------chHHHHHHHHHhhCCCCCCCccccchh
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACS------------------GDSAFADALEAFGGGHDDPVSVSIGGP 77 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~------------------~~~~~~~~l~~~~~~~~d~~~~~~~~~ 77 (760)
-+..+|.+++.++.|+.++++....|++- +-.+. ....+.+++...|..+.+... + |.
T Consensus 18 df~~l~~~~d~t~~~~~~i~~~t~~~LqP-Np~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~S~--~-G~ 93 (229)
T cd07616 18 HLENLLSKAECTKHWTEKIMKQTEVLLQP-NPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPGTA--Y-GN 93 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCc--H-HH
Confidence 45778999999999999999998887653 21111 234555555555544433322 3 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHH
Q 046849 78 VISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEE 157 (760)
Q Consensus 78 ~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~ 157 (760)
+|.+||.+.+.|...+..+...+...++.||++|+..+|+.+...||+.+..+-+||.+..|+.+. ++++.-...+.
T Consensus 94 aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~kA---k~~~~~~~~e~ 170 (229)
T cd07616 94 ALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKKA---KVAEARAAAEQ 170 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcchhhcchHH
Confidence 999999999999999999999999999999999999999999999999999999999999997543 23333223577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 158 DLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 158 ~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
+|..++-.|.++.-+....|..|... +.+.+..|..|+.||..||.++++.+.++..
T Consensus 171 elr~ae~efees~E~a~~~m~~i~~~-~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~ 227 (229)
T cd07616 171 ELRITQSEFDRQAEITRLLLEGISST-HAHHLRCLNDFVEAQMTYYAQCYQYMLDLQK 227 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999888888888877753 4589999999999999999999999887653
No 120
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.33 E-value=1.2e-12 Score=145.29 Aligned_cols=122 Identities=17% Similarity=0.132 Sum_probs=101.8
Q ss_pred hhhHHHHhcCHHHHHHHHHhcCCcccCc------------ccCCCCCCccccccccccccchhhhhhcccccCCCCcccC
Q 046849 616 SIWEAVKTQNLQEVYRLIVTSDANIINT------------TFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQR 683 (760)
Q Consensus 616 ~L~~A~~~~~~~~v~~ll~~g~~d~~n~------------~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~ 683 (760)
.||.|+..|+++.+..+|..|..+ .+. ...|..|.||||+||+.|+. +.+..++..
T Consensus 228 pLhlAve~g~~e~lk~~L~n~~~~-a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~-----------~svd~Ll~~ 295 (929)
T KOG0510|consen 228 PLHLAVEGGDIEMLKMCLQNGKKI-ADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGP-----------ESVDNLLGF 295 (929)
T ss_pred chhhhhhcCCHHHHHHHHhCcccc-chhhhHHHHHHHHHhhcccccCCchHHHHHHcCCh-----------hHHHHHHHc
Confidence 399999999999999999876432 221 24577899999999999864 344456899
Q ss_pred cCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 684 IKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQ-FGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 684 gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~-~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
|+++|.++ .++.||||.||..|+..+|+-||+ .|.- ..|..|-.|.||||+|+..|| ..++++|++
T Consensus 296 Ga~I~~kn--~d~~spLH~AA~yg~~ntv~rLL~~~~~r-----llne~D~~g~tpLHlaa~~gH---~~v~qlLl~ 362 (929)
T KOG0510|consen 296 GASINSKN--KDEESPLHFAAIYGRINTVERLLQESDTR-----LLNESDLHGMTPLHLAAKSGH---DRVVQLLLN 362 (929)
T ss_pred CCcccccC--CCCCCchHHHHHcccHHHHHHHHhCcCcc-----ccccccccCCCchhhhhhcCH---HHHHHHHHh
Confidence 99999999 999999999999999999999999 5432 234499999999999999999 999999875
No 121
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=4.6e-12 Score=135.44 Aligned_cols=162 Identities=26% Similarity=0.271 Sum_probs=118.3
Q ss_pred CCcHHHHHHHHHHHHhhhh-hhhcCCCCc---cccchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccc
Q 046849 583 KDVFHYKEQYINAKYVEKL-LVIRDTSDA---KSRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVD 658 (760)
Q Consensus 583 ~~~~~~re~fI~~KY~~k~-Fv~~~~~~~---~~~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~ 658 (760)
.++....+.--..-|.+.. |+......+ .++++.||+++...+.+.|..++..| ++ || ..|..|+||||.|+
T Consensus 39 ~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~g-a~-Vn--~~d~e~wtPlhaaa 114 (527)
T KOG0505|consen 39 EDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENG-AN-VN--AQDNEGWTPLHAAA 114 (527)
T ss_pred CchHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhc-CC-cc--ccccccCCcchhhc
Confidence 3333444444444444443 333322222 56777799999999988888888886 44 55 57889999999999
Q ss_pred cccccchhhhhhcccccCC--------CC-c---------------------------------------ccCcCCCCCC
Q 046849 659 NTQYSEIDFHKVKKEENNG--------PA-G---------------------------------------CQRIKDSNDP 690 (760)
Q Consensus 659 ~~g~~~~~~~~~~~~~~~~--------~~-l---------------------------------------l~~gadvn~~ 690 (760)
..|+..++...+.....+. +. + +..|.+.++.
T Consensus 115 scg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~ 194 (527)
T KOG0505|consen 115 SCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDAR 194 (527)
T ss_pred ccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccc
Confidence 9998777622110000000 00 0 5578888888
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 691 GNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 691 ~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+ ..|.|+||.|+.+|..++.++||+.|.++++ +|.+|+||||.|+..|+ .++.++|++
T Consensus 195 ~--~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~------~D~dgWtPlHAAA~Wg~---~~~~elL~~ 252 (527)
T KOG0505|consen 195 H--ARGATALHVAAANGYTEVAALLLQAGYSVNI------KDYDGWTPLHAAAHWGQ---EDACELLVE 252 (527)
T ss_pred c--cccchHHHHHHhhhHHHHHHHHHHhccCccc------ccccCCCcccHHHHhhh---HhHHHHHHH
Confidence 8 6699999999999999999999999999887 99999999999999999 888888765
No 122
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.32 E-value=6.4e-12 Score=127.71 Aligned_cols=107 Identities=24% Similarity=0.308 Sum_probs=84.3
Q ss_pred cCcccCCCCCCccccccccccccchhhhhh-cccccCCCCc--------------------------ccCcCCCCCCCCC
Q 046849 641 INTTFDDVVGVDSYHHVDNTQYSEIDFHKV-KKEENNGPAG--------------------------CQRIKDSNDPGNC 693 (760)
Q Consensus 641 ~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~-~~~~~~~~~l--------------------------l~~gadvn~~~~~ 693 (760)
||. .|.+|+|+||+|+.+++-+++..++ .+.+++.... |=.-.|||++- .
T Consensus 261 VNl--aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKA-s 337 (452)
T KOG0514|consen 261 VNL--ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKA-S 337 (452)
T ss_pred hhh--hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhh-h
Confidence 554 6778999999999998877764322 2222222221 22344777765 2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|+|+|++|+.+|+.++|+.||..|||||+ .|.+|-|+|+.|+++|| .||+.+|+.
T Consensus 338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNi------QDdDGSTALMCA~EHGh---kEivklLLA 394 (452)
T KOG0514|consen 338 QHGQTALMLAVSHGRVDMVKALLACGADVNI------QDDDGSTALMCAAEHGH---KEIVKLLLA 394 (452)
T ss_pred hhcchhhhhhhhcCcHHHHHHHHHccCCCcc------ccCCccHHHhhhhhhCh---HHHHHHHhc
Confidence 5799999999999999999999999999998 99999999999999999 999999974
No 123
>PHA02795 ankyrin-like protein; Provisional
Probab=99.32 E-value=1.7e-12 Score=141.00 Aligned_cols=122 Identities=13% Similarity=-0.046 Sum_probs=95.2
Q ss_pred HHHhcCHHHHHHHHHhcCCcccC----cccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCC
Q 046849 620 AVKTQNLQEVYRLIVTSDANIIN----TTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQ 695 (760)
Q Consensus 620 A~~~~~~~~v~~ll~~g~~d~~n----~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~ 695 (760)
|+..+..+.+..|+.. +++ +| ....+..++|+||.++.++. +..+++..|+++|||+|..+
T Consensus 84 ~~~~~~k~~~~~l~s~-~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~---------n~~eiV~~LI~~GADIn~~~---- 148 (437)
T PHA02795 84 FAYITYKDIISALVSK-NYM-EDIFSIIIKNCNSVQDLLLYYLSNAY---------VEIDIVDFMVDHGAVIYKIE---- 148 (437)
T ss_pred HhhcchHHHHHHHHhc-ccc-cchhhhhhhccccccHHHHHHHHhcC---------CCHHHHHHHHHCCCCCCCCC----
Confidence 4444554555555555 565 55 11356679999999998542 45667778899999999855
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCcc-cc--------------------------------CCCCCCCCCCCcHHHHH
Q 046849 696 GGSLLHLACQCGNLVMLELLIQFGADIN-MR--------------------------------ARPSIKDGGGLSSLERA 742 (760)
Q Consensus 696 G~TpLh~Aa~~g~~~~v~lLL~~GAdvn-~~--------------------------------Ad~~~~d~~G~TpL~~A 742 (760)
+.||||.|+..|+.++|++|+.+||+++ .. ||+|.+|..|.||||+|
T Consensus 149 ~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~A 228 (437)
T PHA02795 149 CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRA 228 (437)
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHH
Confidence 6899999999999999999999998421 10 99999999999999999
Q ss_pred HHcCCCChHHHHHHhhc
Q 046849 743 MEMGAITDEELFILLAE 759 (760)
Q Consensus 743 ~~~g~~~~~eiv~lL~~ 759 (760)
+..|+ .+++++|++
T Consensus 229 a~~g~---~eiVelLL~ 242 (437)
T PHA02795 229 IYAGY---IDLVSWLLE 242 (437)
T ss_pred HHcCC---HHHHHHHHH
Confidence 99999 999999975
No 124
>PHA02792 ankyrin-like protein; Provisional
Probab=99.32 E-value=1.2e-12 Score=147.26 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=89.4
Q ss_pred hhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCC
Q 046849 616 SIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQ 695 (760)
Q Consensus 616 ~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~ 695 (760)
.++.|+..|+.+.+..|+..| ++ +|....+..|.||||.|+..... ....++..++++|||+|.+| ..
T Consensus 342 ~~~~Aa~~gn~eIVelLIs~G-AD-IN~kD~~g~~~TpLh~A~~n~~~--------~v~~IlklLIs~GADIN~kD--~~ 409 (631)
T PHA02792 342 KYFQKFDNRDPKVVEYILKNG-NV-VVEDDDNIINIMPLFPTLSIHES--------DVLSILKLCKPYIDDINKID--KH 409 (631)
T ss_pred HHHHHHHcCCHHHHHHHHHcC-Cc-hhhhcCCCCChhHHHHHHHhccH--------hHHHHHHHHHhcCCcccccc--cc
Confidence 388999999998888888875 66 66533333356999987654321 11234455689999999999 99
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHH
Q 046849 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAME 744 (760)
Q Consensus 696 G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~ 744 (760)
|+||||+|+..++.+++++|+.+||++|. +|..|.||||+|+.
T Consensus 410 G~TPLh~Aa~~~n~eivelLLs~GADIN~------kD~~G~TpL~~A~~ 452 (631)
T PHA02792 410 GRSILYYCIESHSVSLVEWLIDNGADINI------TTKYGSTCIGICVI 452 (631)
T ss_pred CcchHHHHHHcCCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHH
Confidence 99999999999999999999999999988 99999999999986
No 125
>PHA02917 ankyrin-like protein; Provisional
Probab=99.31 E-value=4.4e-12 Score=147.67 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=99.8
Q ss_pred chhhhHHHHh---cCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhh----hh-----------------
Q 046849 614 TTSIWEAVKT---QNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDF----HK----------------- 669 (760)
Q Consensus 614 ~~~L~~A~~~---~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~----~~----------------- 669 (760)
.+.||.|+.. |+.+.+..||..| ++ ++ ..+..|.||||.|+..|+..++. .+
T Consensus 33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~g-a~-v~--~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~ 108 (661)
T PHA02917 33 NNALHAYLFNEHCNNVEVVKLLLDSG-TN-PL--HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSY 108 (661)
T ss_pred CcHHHHHHHhhhcCcHHHHHHHHHCC-CC-cc--ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHH
Confidence 3449987554 7888888888875 55 54 57778999999999988743321 00
Q ss_pred h---cccccCCCCcccCcCCCCCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCccccCCCCCCCCCC---------
Q 046849 670 V---KKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLAC--QCGNLVMLELLIQFGADINMRARPSIKDGGG--------- 735 (760)
Q Consensus 670 ~---~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa--~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G--------- 735 (760)
+ .+..++++.|+++|+|+|.+| .+|+||||+|+ ..|+.++|++||++||++|. .+..+..|
T Consensus 109 ~a~~~~~~e~vk~Ll~~Gadin~~d--~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~---~d~~~~~g~~~~~~~~~ 183 (661)
T PHA02917 109 MKSKNVDVDLIKVLVEHGFDLSVKC--ENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY---EDEDDEYGYAYDDYQPR 183 (661)
T ss_pred HHhhcCCHHHHHHHHHcCCCCCccC--CCCccHHHHHHHccCCCHHHHHHHHHcCCCccc---ccccccccccccccccc
Confidence 0 013456777799999999999 99999999653 57899999999999999986 11123334
Q ss_pred --CcHHHHHHH-----------cCCCChHHHHHHhhc
Q 046849 736 --LSSLERAME-----------MGAITDEELFILLAE 759 (760)
Q Consensus 736 --~TpL~~A~~-----------~g~~~~~eiv~lL~~ 759 (760)
.||||+|+. .++ .+++++|++
T Consensus 184 ~~~t~L~~a~~~~~~~~~~~~~~~~---~eiv~~Li~ 217 (661)
T PHA02917 184 NCGTVLHLYIISHLYSESDTRAYVR---PEVVKCLIN 217 (661)
T ss_pred ccccHHHHHHhhcccccccccccCc---HHHHHHHHH
Confidence 599999986 356 899999975
No 126
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.31 E-value=8.1e-13 Score=125.30 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=100.8
Q ss_pred ccchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCC
Q 046849 612 SRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPG 691 (760)
Q Consensus 612 ~~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~ 691 (760)
.+...|..|++.|.+..|..||..| +| ++. ......++|.+|+..|. .+++.+||.++.|||.-|
T Consensus 159 ~GfTpLiWAaa~G~i~vV~fLL~~G-Ad-p~~--lgk~resALsLAt~ggy-----------tdiV~lLL~r~vdVNvyD 223 (296)
T KOG0502|consen 159 FGFTPLIWAAAKGHIPVVQFLLNSG-AD-PDA--LGKYRESALSLATRGGY-----------TDIVELLLTREVDVNVYD 223 (296)
T ss_pred cCchHhHHHHhcCchHHHHHHHHcC-CC-hhh--hhhhhhhhHhHHhcCCh-----------HHHHHHHHhcCCCcceec
Confidence 3456688899999999888888885 55 444 34467899999999864 445566799999999999
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 692 NCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 692 ~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
.+|-|||-||++.||++||+.||..||+++. .|..|+++++.|+..|+ . +|+...
T Consensus 224 --wNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~------e~dsGy~~mdlAValGy---r-~Vqqvi 278 (296)
T KOG0502|consen 224 --WNGGTPLLYAVRGNHVKCVESLLNSGADVTQ------EDDSGYWIMDLAVALGY---R-IVQQVI 278 (296)
T ss_pred --cCCCceeeeeecCChHHHHHHHHhcCCCccc------ccccCCcHHHHHHHhhh---H-HHHHHH
Confidence 9999999999999999999999999999887 99999999999999998 4 555443
No 127
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.31 E-value=9.2e-13 Score=113.29 Aligned_cols=80 Identities=34% Similarity=0.379 Sum_probs=68.0
Q ss_pred ccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCC
Q 046849 654 YHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDG 733 (760)
Q Consensus 654 Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~ 733 (760)
||.|+..|+. +++..+++.|.+++. |.||||+||..|+.+++++|+++|++++. +|.
T Consensus 1 L~~A~~~~~~-----------~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~------~~~ 57 (89)
T PF12796_consen 1 LHIAAQNGNL-----------EILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINS------QDK 57 (89)
T ss_dssp HHHHHHTTTH-----------HHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-------BST
T ss_pred CHHHHHcCCH-----------HHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccc------cCC
Confidence 6788888643 344455777777653 88999999999999999999999999888 999
Q ss_pred CCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 734 GGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 734 ~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.|.||||+|+..|+ .+++++|.+
T Consensus 58 ~g~t~L~~A~~~~~---~~~~~~Ll~ 80 (89)
T PF12796_consen 58 NGNTALHYAAENGN---LEIVKLLLE 80 (89)
T ss_dssp TSSBHHHHHHHTTH---HHHHHHHHH
T ss_pred CCCCHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999 999999975
No 128
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.31 E-value=4e-12 Score=98.08 Aligned_cols=54 Identities=37% Similarity=0.598 Sum_probs=45.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 696 GGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 696 G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
|+||||+||..|+.+++++|++.|+|+|. +|.+|.||||+|+..|+ .+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~------~d~~g~t~lh~A~~~g~---~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINA------QDEDGRTPLHYAAKNGN---IDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-------B-TTS--HHHHHHHTT----HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHccC---HHHHHHHC
Confidence 78999999999999999999999999888 89999999999999999 99999884
No 129
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.30 E-value=1.1e-11 Score=106.38 Aligned_cols=81 Identities=14% Similarity=0.333 Sum_probs=65.3
Q ss_pred CCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccccccCceeccCCCC
Q 046849 309 GDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTVDLRTSAIKMDGED 388 (760)
Q Consensus 309 ~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~ 388 (760)
++||||||+++ ++.|+||+++++.. ..+...+++..|.|.++..-
T Consensus 18 K~~KrrwF~lk-~~~L~YyK~kee~~----------------------------------~~p~i~lnl~gcev~~dv~~ 62 (106)
T cd01237 18 KGYKQYWFTFR-DTSISYYKSKEDSN----------------------------------GAPIGQLNLKGCEVTPDVNV 62 (106)
T ss_pred hhheeEEEEEe-CCEEEEEccchhcC----------------------------------CCCeEEEecCceEEcccccc
Confidence 57999999999 89999998765421 11244678889998875433
Q ss_pred CCCCceEEEEecC----ceeEEEcCCHHHHHHHHHHHHHH
Q 046849 389 TDLRLCFRIISPV----KTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 389 ~~~~~~F~i~~~~----~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
..++|+|.+.+|. ++|+|.|+||+++..||+|.+.|
T Consensus 63 ~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 63 AQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred cccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 4567999999988 99999999999999999999865
No 130
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.29 E-value=9.8e-13 Score=124.72 Aligned_cols=95 Identities=21% Similarity=0.114 Sum_probs=85.7
Q ss_pred cCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 046849 641 INTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGA 720 (760)
Q Consensus 641 ~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GA 720 (760)
+|. .|..|.|||.||+..|+.+ ++.+||..|||+++.. +...|+|.+|+..|..++|++||..+.
T Consensus 153 VN~--~De~GfTpLiWAaa~G~i~-----------vV~fLL~~GAdp~~lg--k~resALsLAt~ggytdiV~lLL~r~v 217 (296)
T KOG0502|consen 153 VNA--CDEFGFTPLIWAAAKGHIP-----------VVQFLLNSGADPDALG--KYRESALSLATRGGYTDIVELLLTREV 217 (296)
T ss_pred ccC--ccccCchHhHHHHhcCchH-----------HHHHHHHcCCChhhhh--hhhhhhHhHHhcCChHHHHHHHHhcCC
Confidence 675 6789999999999998755 4445689999999988 889999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 721 DINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 721 dvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
|||. .|.+|-|||-||+..|| +++++.|++
T Consensus 218 dVNv------yDwNGgTpLlyAvrgnh---vkcve~Ll~ 247 (296)
T KOG0502|consen 218 DVNV------YDWNGGTPLLYAVRGNH---VKCVESLLN 247 (296)
T ss_pred Ccce------eccCCCceeeeeecCCh---HHHHHHHHh
Confidence 9998 99999999999999999 888888865
No 131
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.27 E-value=3.3e-12 Score=133.54 Aligned_cols=94 Identities=18% Similarity=0.138 Sum_probs=77.2
Q ss_pred CCCCCCcc-ccccccccccchhhhhhcccccCCCCcccCcCCCCCCCC--CCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 046849 646 DDVVGVDS-YHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGN--CLQGGSLLHLACQCGNLVMLELLIQFGADI 722 (760)
Q Consensus 646 ~d~~g~t~-Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~--~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdv 722 (760)
.|..|.|+ ||.|+..| ..+++..|+++|||+|..+. +..|.||||+|+..|+.+++++|+.+|||+
T Consensus 28 ~d~~~~~~lL~~A~~~~-----------~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV 96 (300)
T PHA02884 28 KNKICIANILYSSIKFH-----------YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV 96 (300)
T ss_pred cCcCCCCHHHHHHHHcC-----------CHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 34456665 56666664 34566678999999998752 258999999999999999999999999999
Q ss_pred cccCCCCCC-CCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 723 NMRARPSIK-DGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 723 n~~Ad~~~~-d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
|. + +..|.||||+|+..|+ .+++++|.+
T Consensus 97 N~------~~~~~g~TpLh~Aa~~~~---~eivklLL~ 125 (300)
T PHA02884 97 NR------YAEEAKITPLYISVLHGC---LKCLEILLS 125 (300)
T ss_pred Cc------ccCCCCCCHHHHHHHcCC---HHHHHHHHH
Confidence 87 5 4679999999999999 999999864
No 132
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=99.26 E-value=1.7e-09 Score=106.62 Aligned_cols=188 Identities=19% Similarity=0.325 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch-----------------------HHHHHHHHHhhCCCCCCCcc
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGD-----------------------SAFADALEAFGGGHDDPVSV 72 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~~d~~~~ 72 (760)
-+..+|..++.++.|+.++++....|.+- +-...+. ..+.+++...|..+.+..
T Consensus 8 ~f~~le~k~D~t~~~~~~i~~~t~~~LQP-Npa~r~k~~~~~~~~K~~g~~K~~~~p~~~~~Lg~~M~~~G~elg~dS-- 84 (223)
T cd07613 8 DFKEMERKVDVTSRAVMEIMTKTIEYLQP-NPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDEC-- 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHhhccccCCCCCChHhHHHHHHHHHHhhCCCCC--
Confidence 56788999999999999999988877543 1112222 344444444444333322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhH
Q 046849 73 SIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIV 152 (760)
Q Consensus 73 ~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~ 152 (760)
.+ |.+|..||.+.+.|...+..+..++...++.||++|...+|+.+...||+.+..+-+||..-.|+.+.
T Consensus 85 ~~-G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~--------- 154 (223)
T cd07613 85 NF-GPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKI--------- 154 (223)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCC---------
Confidence 23 47999999999999999999999999999999999999999999999999999999999865554211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 046849 153 AELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQ 219 (760)
Q Consensus 153 ~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~ 219 (760)
.++++..+...|..+.=+....|..+...- .+.+..|..|+.+|..|++++++++.++.+.+.+
T Consensus 155 --~eeElr~A~~kFees~E~a~~~M~n~l~~e-~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 155 --PDEELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266788888899998889988998888763 3899999999999999999999999888776653
No 133
>PHA02730 ankyrin-like protein; Provisional
Probab=99.26 E-value=1.1e-11 Score=140.84 Aligned_cols=130 Identities=13% Similarity=0.066 Sum_probs=96.5
Q ss_pred chhhhHHHHhcC----HHHHHHHHHhcC-CcccCcccCCCCCCccccc---cccccccchhhhhhcccccCCCCcccCcC
Q 046849 614 TTSIWEAVKTQN----LQEVYRLIVTSD-ANIINTTFDDVVGVDSYHH---VDNTQYSEIDFHKVKKEENNGPAGCQRIK 685 (760)
Q Consensus 614 ~~~L~~A~~~~~----~~~v~~ll~~g~-~d~~n~~~~d~~g~t~Lh~---A~~~g~~~~~~~~~~~~~~~~~~ll~~ga 685 (760)
.+.||.|+..++ .+.+..||..|+ .+ +| ..|..|.||||. |...+...... .....+++..|+.+||
T Consensus 379 ~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~d-IN--~kd~~G~T~Lh~~i~a~~~n~~~~~~--e~~~~~ivk~LIs~GA 453 (672)
T PHA02730 379 NYPLHDYFVNNNNIVDVNVVRFIVENNGHMA-IN--HVSNNGRLCMYGLILSRFNNCGYHCY--ETILIDVFDILSKYMD 453 (672)
T ss_pred CcHHHHHHHHcCCcchHHHHHHHHHcCCCcc-cc--ccccCCCchHhHHHHHHhcccccccc--chhHHHHHHHHHhccc
Confidence 344998888774 677777777753 24 44 467789999983 33222100000 0001134567799999
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCC-CCCcHHHHHHHc--CCCChHHHHHHhhc
Q 046849 686 DSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDG-GGLSSLERAMEM--GAITDEELFILLAE 759 (760)
Q Consensus 686 dvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~-~G~TpL~~A~~~--g~~~~~eiv~lL~~ 759 (760)
|+|.+| ..|.||||+|+..++.+++++|+.+||++|. +|. .|.||||+|+.. |+ .+++++|++
T Consensus 454 DINakD--~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~------~d~~~g~TaL~~Aa~~~~~~---~eIv~~LLs 519 (672)
T PHA02730 454 DIDMID--NENKTLLYYAVDVNNIQFARRLLEYGASVNT------TSRSIINTAIQKSSYRRENK---TKLVDLLLS 519 (672)
T ss_pred chhccC--CCCCCHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCcCCcCHHHHHHHhhcCc---HHHHHHHHH
Confidence 999999 9999999999999999999999999999988 886 599999999974 67 899998864
No 134
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.25 E-value=2.6e-09 Score=107.32 Aligned_cols=203 Identities=14% Similarity=0.234 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h-----hchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVA--C-----SGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~--~-----~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
-+..+|..++.++.|+.++.|....|.+..... . -....+++++.+.+....+... + +.+|..++.+.+.
T Consensus 16 ~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~~Lgq~M~e~~~~lg~~s~--~-g~aL~~~gea~~k 92 (246)
T cd07618 16 DLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLTALAQNMQEGSAQLGEESL--I-GKMLDTCGDAENK 92 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHHHHHHHHHHHHhcCCCCcc--H-HHHHHHHHHHHHH
Confidence 467789999999999999999988874331100 0 0245677777777765544322 3 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC------hhhHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR------DDIVAELEEDLQNS 162 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~------~~~~~e~~~~l~~~ 162 (760)
+..-+..+-..+...|+.||++|+.++|+.+...||+.++.+.+||.+..|+.+..++.. ...+....+++.++
T Consensus 93 la~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a 172 (246)
T cd07618 93 LAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEA 172 (246)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHH
Confidence 998888888888899999999999999999999999999999999999999866543110 11111122333444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 046849 163 KSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQVLT 222 (760)
Q Consensus 163 Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l~~ 222 (760)
+..|+.+-=.|+..|-.+- -+..+++..+..|+.+|..|+++++++++.+-|.|+.+..
T Consensus 173 ~~k~E~~kD~~~~dm~~~l-~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 173 GNKVEQCKDQLAADMYNFA-SKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444434443333332 5577999999999999999999999999999888887763
No 135
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.25 E-value=2.5e-12 Score=124.43 Aligned_cols=98 Identities=20% Similarity=0.131 Sum_probs=79.4
Q ss_pred cccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHH---HHHHHHcC
Q 046849 643 TTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVM---LELLIQFG 719 (760)
Q Consensus 643 ~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~---v~lLL~~G 719 (760)
+...+..+.++||.|+..|+... ..+++..+++.|+++|..| ..|+||||+||..|+.+. +++|+.+|
T Consensus 13 ~~~~~~~~~~~l~~a~~~g~~~~-------l~~~~~~l~~~g~~~~~~d--~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G 83 (166)
T PHA02743 13 AVEIDEDEQNTFLRICRTGNIYE-------LMEVAPFISGDGHLLHRYD--HHGRQCTHMVAWYDRANAVMKIELLVNMG 83 (166)
T ss_pred HhhhccCCCcHHHHHHHcCCHHH-------HHHHHHHHhhcchhhhccC--CCCCcHHHHHHHhCccCHHHHHHHHHHcC
Confidence 33345568889999999875321 1233344578899999888 899999999999998654 89999999
Q ss_pred CCccccCCCCCCC-CCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 720 ADINMRARPSIKD-GGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 720 Advn~~Ad~~~~d-~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
+++|. +| ..|.||||+|+..|+ .+++++|.
T Consensus 84 adin~------~d~~~g~TpLh~A~~~g~---~~iv~~Ll 114 (166)
T PHA02743 84 ADINA------RELGTGNTLLHIAASTKN---YELAEWLC 114 (166)
T ss_pred CCCCC------CCCCCCCcHHHHHHHhCC---HHHHHHHH
Confidence 99988 88 589999999999999 89999886
No 136
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=99.25 E-value=2.4e-09 Score=105.11 Aligned_cols=183 Identities=10% Similarity=0.194 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------------------hHHHHHHHHHhhCCCCCCCccccchh
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG------------------DSAFADALEAFGGGHDDPVSVSIGGP 77 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~~d~~~~~~~~~ 77 (760)
-+..+|.+++.++.|+.++++....|++- +-.+.+ ...+.+++...|..+..... + |.
T Consensus 18 df~~l~~~~D~tk~~~~~i~~~t~~~LqP-Np~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s~--~-G~ 93 (220)
T cd07617 18 HFENLLARADSTKNWTEKILRQTEVLLQP-NPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGTP--Y-GK 93 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCc--h-HH
Confidence 46778999999999999999998887653 111111 24455555555543333222 3 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHH
Q 046849 78 VISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEE 157 (760)
Q Consensus 78 ~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~ 157 (760)
+|..||.+.+.|...+..+...+...++.||++|+..+|+.+...||+.+..+-+||....|..+ ++.
T Consensus 94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~k------------ae~ 161 (220)
T cd07617 94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKK------------AEH 161 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------cHH
Confidence 99999999999999999999999999999999999999999999999999999999998777522 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 158 DLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 158 ~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
+|..+...|..+.-.+...|..|... +.+-|..|..|+.||..||.++++.+.++.+
T Consensus 162 elr~A~~kf~~~~E~a~~~M~~il~~-~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~ 218 (220)
T cd07617 162 ELRVAQTEFDRQAEVTRLLLEGISST-HVNHLRCLHEFVEAQATYYAQCYRHMLDLQK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888887666555557777654 3478999999999999999999999987754
No 137
>PHA02730 ankyrin-like protein; Provisional
Probab=99.25 E-value=6.6e-12 Score=142.78 Aligned_cols=140 Identities=11% Similarity=0.012 Sum_probs=102.3
Q ss_pred cchhhhHHHHhc---CHHHHHHHHHhcCCcccCcccCCCCCCcccccccccc--ccchhhhhhcc---------------
Q 046849 613 RTTSIWEAVKTQ---NLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQ--YSEIDFHKVKK--------------- 672 (760)
Q Consensus 613 ~~~~L~~A~~~~---~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g--~~~~~~~~~~~--------------- 672 (760)
+.+.||.|+..+ +.+.+..||.. |++ ++ ..|..|.||||+|+..+ +.+++..++..
T Consensus 41 G~TaLh~A~~~~~~~~~eivklLLs~-GAd-in--~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~ 116 (672)
T PHA02730 41 GNNALHCYVSNKCDTDIKIVRLLLSR-GVE-RL--CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDF 116 (672)
T ss_pred CCcHHHHHHHcCCcCcHHHHHHHHhC-CCC-Cc--ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCc
Confidence 334599999887 36666666665 566 55 46778999999988865 45455322211
Q ss_pred -----------cccCCCCccc-CcCCCCCCCCC---CCCChHHHHHHHcCCHHHHHHHHHcCCCcc------c-c-----
Q 046849 673 -----------EENNGPAGCQ-RIKDSNDPGNC---LQGGSLLHLACQCGNLVMLELLIQFGADIN------M-R----- 725 (760)
Q Consensus 673 -----------~~~~~~~ll~-~gadvn~~~~~---~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn------~-~----- 725 (760)
..++++.|+. .|+||+....- ..|.+|+++|+..+++++|++||++||+++ . .
T Consensus 117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c 196 (672)
T PHA02730 117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRC 196 (672)
T ss_pred hHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCcc
Confidence 1134445564 67888866310 268999999999999999999999999995 1 1
Q ss_pred -----------------------------CCCCCCCCCCCcHHHH--HHHcCCCChHHHHHHhhc
Q 046849 726 -----------------------------ARPSIKDGGGLSSLER--AMEMGAITDEELFILLAE 759 (760)
Q Consensus 726 -----------------------------Ad~~~~d~~G~TpL~~--A~~~g~~~~~eiv~lL~~ 759 (760)
||+|.+|.+|.||||+ |...|| .|+|++|++
T Consensus 197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~---~eiv~~Li~ 258 (672)
T PHA02730 197 KNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTID---IEIVKLLIK 258 (672)
T ss_pred chhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCccc---HHHHHHHHh
Confidence 9999999999999995 555677 899999975
No 138
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.22 E-value=1.3e-10 Score=101.28 Aligned_cols=97 Identities=32% Similarity=0.612 Sum_probs=73.9
Q ss_pred eEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccc
Q 046849 295 IKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRT 374 (760)
Q Consensus 295 ~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (760)
.++|||.++.......|++|||+|. ++.|+||+....... ..+...
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~-~~~l~~~~~~~~~~~---------------------------------~~~~~~ 47 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLF-NSTLLYYKSEKAKKD---------------------------------YKPKGS 47 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEE-CCEEEEEeCCCcccc---------------------------------CCCceE
Confidence 5799999997644568999999999 688888876543110 112456
Q ss_pred ccccCceeccCCCCC--CCCceEEEEecCc-eeEEEcCCHHHHHHHHHHHHHHH
Q 046849 375 VDLRTSAIKMDGEDT--DLRLCFRIISPVK-TYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 375 i~l~~~~v~~~~~~~--~~~~~F~i~~~~~-~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
|.+..+.+....+.. ...++|.|.++++ +|+|+|+|++|+..|+.+|+.++
T Consensus 48 i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 48 IDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 778777766543321 4679999999988 99999999999999999998765
No 139
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.21 E-value=4.9e-09 Score=104.99 Aligned_cols=195 Identities=15% Similarity=0.261 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------hHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG--------DSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFR 87 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~ 87 (760)
-+..+|..++.++.|+.++.|....|.+... ...+ ...+.+++.+.+....++.. + +.+|..++.+.+
T Consensus 16 ~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp-~~r~ekr~~k~P~~~L~q~M~~~g~elg~~s~--l-g~aL~~~gea~~ 91 (248)
T cd07619 16 DLLQVEKRLELVKQVSHSTHKKLTACLQGQQ-GVDADKRSKKLPLTTLAQCMVEGAAVLGDDSL--L-GKMLKLCGETED 91 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-HHHHHHhccCCCHHHHHHHHHHHHHhcCCCch--H-HHHHHHHHHHHH
Confidence 5678899999999999999999999876521 1111 34677888777765433322 2 478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----------ChhhHH---
Q 046849 88 ELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNT-----------RDDIVA--- 153 (760)
Q Consensus 88 el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k-----------~~~~~~--- 153 (760)
.|..-+..+-.++...|+.||++|+.++|+.+...||+.++.+.+||.+..|+.+.+++. +.+.++
T Consensus 92 kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~ 171 (248)
T cd07619 92 KLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEM 171 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997665431 122222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 046849 154 -ELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQVLT 222 (760)
Q Consensus 154 -e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l~~ 222 (760)
++++.+..+|-.+...++.++. +..+.+.++..|+.+|..|+++++++++++.|.|+.+..
T Consensus 172 E~ae~~~e~~kd~~~~~m~~~l~--------~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 172 EEAANRMEICRDQLSADMYSFVA--------KEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333344444444443332 345888899999999999999999999999998888764
No 140
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.21 E-value=1e-11 Score=122.33 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=101.8
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCC
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCL 694 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~ 694 (760)
.+|+.++..|+.+....||..- .. +| ..|..|.++|..|+..|+. +++..+|++|+|||..- ..
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~v-r~-vn--~~D~sGMs~LahAaykGnl-----------~~v~lll~~gaDvN~~q-hg 77 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTV-RQ-VN--QRDPSGMSVLAHAAYKGNL-----------TLVELLLELGADVNDKQ-HG 77 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHh-hh-hh--ccCCCcccHHHHHHhcCcH-----------HHHHHHHHhCCCcCccc-cc
Confidence 3499999999999999999873 22 44 5788999999999999853 35556799999999754 35
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHH
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFI 755 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~ 755 (760)
.+.||||+||..|+.+++.+|++.||.... .|.-|+|+-.+|+.-||.+|++|+.
T Consensus 78 ~~YTpLmFAALSGn~dvcrllldaGa~~~~------vNsvgrTAaqmAAFVG~H~CV~iIN 132 (396)
T KOG1710|consen 78 TLYTPLMFAALSGNQDVCRLLLDAGARMYL------VNSVGRTAAQMAAFVGHHECVAIIN 132 (396)
T ss_pred ccccHHHHHHHcCCchHHHHHHhccCcccc------ccchhhhHHHHHHHhcchHHHHHHh
Confidence 689999999999999999999999999776 8999999999999999999988764
No 141
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=6.7e-12 Score=134.23 Aligned_cols=123 Identities=27% Similarity=0.318 Sum_probs=107.5
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
++.|+..++.+.+..+|..| ++ +| ....+|.|+||-+|.-. ..+++++++++|++||..| ..|
T Consensus 44 ~l~A~~~~d~~ev~~ll~~g-a~-~~--~~n~DglTalhq~~id~-----------~~e~v~~l~e~ga~Vn~~d--~e~ 106 (527)
T KOG0505|consen 44 FLEACSRGDLEEVRKLLNRG-AS-PN--LCNVDGLTALHQACIDD-----------NLEMVKFLVENGANVNAQD--NEG 106 (527)
T ss_pred HHhccccccHHHHHHHhccC-CC-cc--ccCCccchhHHHHHhcc-----------cHHHHHHHHHhcCCccccc--ccc
Confidence 88999999999999999886 33 34 45557999999998764 4557778899999999999 999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCcccc---------------------------------------------------
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMR--------------------------------------------------- 725 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~--------------------------------------------------- 725 (760)
|||||.|+..||+.++++||.+||++-+.
T Consensus 107 wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~ 186 (527)
T KOG0505|consen 107 WTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN 186 (527)
T ss_pred CCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999986443
Q ss_pred --CCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 726 --ARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 726 --Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
++.++.+..|-|.||+|+..|. .++.++|.+
T Consensus 187 ~G~~~d~~~~rG~T~lHvAaa~Gy---~e~~~lLl~ 219 (527)
T KOG0505|consen 187 AGAELDARHARGATALHVAAANGY---TEVAALLLQ 219 (527)
T ss_pred ccccccccccccchHHHHHHhhhH---HHHHHHHHH
Confidence 8889999889999999999999 899998875
No 142
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.20 E-value=1.8e-11 Score=147.89 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=99.8
Q ss_pred cchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhh--------------------cc
Q 046849 613 RTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKV--------------------KK 672 (760)
Q Consensus 613 ~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~--------------------~~ 672 (760)
+.+.||.|+..|+.+.+..|+..| ++ +| ..|..|.||||.|+..|+..++..+. .+
T Consensus 558 G~TpLh~Aa~~g~~~~v~~Ll~~g-ad-in--~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g 633 (823)
T PLN03192 558 GRTPLHIAASKGYEDCVLVLLKHA-CN-VH--IRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRN 633 (823)
T ss_pred CCCHHHHHHHcChHHHHHHHHhcC-CC-CC--CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhC
Confidence 334499999999988888777774 55 55 46778999999999999876653221 22
Q ss_pred cccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCC-CcHHHHHHHcC
Q 046849 673 EENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGG-LSSLERAMEMG 746 (760)
Q Consensus 673 ~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G-~TpL~~A~~~g 746 (760)
..+++..++++|+|+|.+| .+|+||||+|+..|+.++|++|+++|||++. .|..| .||++++....
T Consensus 634 ~~~~v~~Ll~~Gadin~~d--~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~------~~~~g~~t~~~l~~~~~ 700 (823)
T PLN03192 634 DLTAMKELLKQGLNVDSED--HQGATALQVAMAEDHVDMVRLLIMNGADVDK------ANTDDDFSPTELRELLQ 700 (823)
T ss_pred CHHHHHHHHHCCCCCCCCC--CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC------CCCCCCCCHHHHHHHHH
Confidence 3445666799999999999 9999999999999999999999999999988 88888 99999887644
No 143
>PHA02792 ankyrin-like protein; Provisional
Probab=99.19 E-value=3.6e-11 Score=135.37 Aligned_cols=117 Identities=12% Similarity=-0.001 Sum_probs=91.5
Q ss_pred HHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCcccccccc-ccccchhhhhhcccccCCCCcccCcCCC----------
Q 046849 619 EAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDN-TQYSEIDFHKVKKEENNGPAGCQRIKDS---------- 687 (760)
Q Consensus 619 ~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~-~g~~~~~~~~~~~~~~~~~~ll~~gadv---------- 687 (760)
.|..+|+++.|..|+.+ |+| +|. .+..|.||||.|+. .++ .++++.|+++|||+
T Consensus 78 ~~s~n~~lElvk~LI~~-GAd-vN~--~~n~~~~~l~ya~~~~~~-----------~eivk~Ll~~Gad~~~~~~~g~~~ 142 (631)
T PHA02792 78 LCSDNIDIELLKLLISK-GLE-INS--IKNGINIVEKYATTSNPN-----------VDVFKLLLDKGIPTCSNIQYGYKI 142 (631)
T ss_pred HHHhcccHHHHHHHHHc-CCC-ccc--ccCCCCcceeEeecCCCC-----------hHHHHHHHHCCCCcccccccCcch
Confidence 45677888888888887 567 775 45568999999976 344 44455556666553
Q ss_pred --------------------------CCCCCCCCCChHHHHHHHcC-------CHHHHHHHHHcCCCccccCCCCCCCCC
Q 046849 688 --------------------------NDPGNCLQGGSLLHLACQCG-------NLVMLELLIQFGADINMRARPSIKDGG 734 (760)
Q Consensus 688 --------------------------n~~~~~~~G~TpLh~Aa~~g-------~~~~v~lLL~~GAdvn~~Ad~~~~d~~ 734 (760)
|..+ ..|.||||+|+..+ +.+++++||.+||+++. +|..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~------~d~~ 214 (631)
T PHA02792 143 IIEQITRAEYYNWDDELDDYDYDYTTDYDD--RMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY------YTYR 214 (631)
T ss_pred hhhhcccccccchhhhccccccccccccCC--CCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc------cCCC
Confidence 3344 67999999999999 89999999999999988 9999
Q ss_pred CCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 735 GLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 735 G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
|.||||+|+...+++ .||+++|.+
T Consensus 215 g~t~l~~~~~~~~i~-~ei~~~L~~ 238 (631)
T PHA02792 215 EHTTLYYYVDKCDIK-REIFDALFD 238 (631)
T ss_pred CChHHHHHHHcccch-HHHHHHHHh
Confidence 999999999999322 789999864
No 144
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.16 E-value=7.6e-11 Score=107.23 Aligned_cols=118 Identities=28% Similarity=0.329 Sum_probs=100.0
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCC
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCL 694 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~ 694 (760)
..|+.|+..++.+.+..++..+ .+ . ...+..|.||||.|+..+. .+++..++..|++++..+ .
T Consensus 9 t~l~~a~~~~~~~~i~~li~~~-~~-~--~~~~~~g~~~l~~a~~~~~-----------~~~~~~ll~~~~~~~~~~--~ 71 (126)
T cd00204 9 TPLHLAASNGHLEVVKLLLENG-AD-V--NAKDNDGRTPLHLAAKNGH-----------LEIVKLLLEKGADVNARD--K 71 (126)
T ss_pred CHHHHHHHcCcHHHHHHHHHcC-CC-C--CccCCCCCcHHHHHHHcCC-----------HHHHHHHHHcCCCccccC--C
Confidence 4499999999998888888776 33 2 3467789999999998863 344555678888888888 8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
.|.||+|+|+..++.+++++|+.+|.+++. .|..|.|||++|...++ .+++.+|.
T Consensus 72 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~------~~~~~~~~l~~~~~~~~---~~~~~~Ll 126 (126)
T cd00204 72 DGNTPLHLAARNGNLDVVKLLLKHGADVNA------RDKDGRTPLHLAAKNGH---LEVVKLLL 126 (126)
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHhcCC---HHHHHHhC
Confidence 999999999999999999999999988887 89999999999999999 88888874
No 145
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.15 E-value=6.2e-11 Score=108.64 Aligned_cols=114 Identities=21% Similarity=0.121 Sum_probs=91.3
Q ss_pred cccchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCC
Q 046849 611 KSRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDP 690 (760)
Q Consensus 611 ~~~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~ 690 (760)
.+++..||.|+-+|.+..+..|+..| ++ ++ ..-..|+||||-||.- +..++.-.||++|||||+.
T Consensus 95 ~D~YTpLHRAaYn~h~div~~ll~~g-An-~~--a~T~~GWTPLhSAckW-----------nN~~va~~LLqhgaDVnA~ 159 (228)
T KOG0512|consen 95 EDEYTPLHRAAYNGHLDIVHELLLSG-AN-KE--AKTNEGWTPLHSACKW-----------NNFEVAGRLLQHGADVNAQ 159 (228)
T ss_pred cccccHHHHHHhcCchHHHHHHHHcc-CC-cc--cccccCccchhhhhcc-----------cchhHHHHHHhccCccccc
Confidence 35666799999999999999999996 44 44 4556799999999986 3455566679999999998
Q ss_pred CCCCCCChHHHHHHHcCCH-HHHHHHHHc-CCCccccCCCCCCCCCCCcHHHHHHHcCC
Q 046849 691 GNCLQGGSLLHLACQCGNL-VMLELLIQF-GADINMRARPSIKDGGGLSSLERAMEMGA 747 (760)
Q Consensus 691 ~~~~~G~TpLh~Aa~~g~~-~~v~lLL~~-GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~ 747 (760)
. ...+||||+||-..+. ..+++||.. +.+ |..++..+.||+.+|...+-
T Consensus 160 t--~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~------pg~~nn~eeta~~iARRT~~ 210 (228)
T KOG0512|consen 160 T--KGLLTPLHLAAGNRNSRDTLELLLHDRYIH------PGLKNNLEETAFDIARRTSM 210 (228)
T ss_pred c--cccchhhHHhhcccchHHHHHHHhhccccC------hhhhcCccchHHHHHHHhhh
Confidence 8 7889999999977665 466777765 434 45599999999999999865
No 146
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.13 E-value=9.8e-12 Score=118.81 Aligned_cols=97 Identities=22% Similarity=0.144 Sum_probs=70.1
Q ss_pred CCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHH---HHHHHHHcCCCc
Q 046849 646 DDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLV---MLELLIQFGADI 722 (760)
Q Consensus 646 ~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~---~v~lLL~~GAdv 722 (760)
.|..|.||||+|+..|+.. .+..+..... -..+..++..| .+|+||||+||..|+.+ ++++|+.+|+++
T Consensus 13 ~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~----~~~~~~~~~~d--~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi 84 (154)
T PHA02736 13 PDIEGENILHYLCRNGGVT--DLLAFKNAIS----DENRYLVLEYN--RHGKQCVHIVSNPDKADPQEKLKLLMEWGADI 84 (154)
T ss_pred cCCCCCCHHHHHHHhCCHH--HHHHHHHHhc----chhHHHHHHhc--CCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence 5667999999999998621 1100000000 00011122334 78999999999999874 689999999999
Q ss_pred cccCCCCCCC-CCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 723 NMRARPSIKD-GGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 723 n~~Ad~~~~d-~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
|. +| ..|.||||+|+..|+ .+++++|+.
T Consensus 85 n~------~~~~~g~T~Lh~A~~~~~---~~i~~~Ll~ 113 (154)
T PHA02736 85 NG------KERVFGNTPLHIAVYTQN---YELATWLCN 113 (154)
T ss_pred cc------cCCCCCCcHHHHHHHhCC---HHHHHHHHh
Confidence 88 87 599999999999999 899998863
No 147
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.10 E-value=3.2e-10 Score=102.71 Aligned_cols=106 Identities=22% Similarity=0.420 Sum_probs=64.4
Q ss_pred EEEEEEeeC---------CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCC
Q 046849 296 KQGYLLKRS---------SNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFN 366 (760)
Q Consensus 296 k~G~L~K~~---------~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (760)
|+|||..+- +....+|+..|+||+ ++.|++|++......+ +++.....
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~-g~~L~~~k~~~~~~~~----------------------~~~~~~~~ 58 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQ-GGQLYFYKDEKSPASS----------------------TPPDIQSV 58 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEE-TTEEEEESSHHHHCCT-----------------------BS---SS
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEE-CCEEEEEccCcccccC----------------------Cccccccc
Confidence 789998431 113458999999998 8999999874321110 00000000
Q ss_pred CCccccccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHH
Q 046849 367 EDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 367 ~~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
+...+...|.|..|...+..+-..|+++|.|.+++ ..|.|||.|++||.+||.+|+-+
T Consensus 59 ~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 59 ENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp --E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred ccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 11223456888887777766777899999999986 67999999999999999999865
No 148
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.10 E-value=6.5e-08 Score=96.52 Aligned_cols=198 Identities=16% Similarity=0.301 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELL 96 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l 96 (760)
....|.....+++-.++|.|.+++|.+++.....++..+++.|..+....+++.. ..+...+-....++.....-+
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~~----~~~~e~y~~~~~~l~~~~~~~ 88 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDEL----RNLVEALDSVTTQLDKTVQEL 88 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788889999999999999999999999999999999886533332211 134566666667776666777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--h--hhHHHHHHHHHHHHHHHHHHHHH
Q 046849 97 RSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR--D--DIVAELEEDLQNSKSAFEKSRFN 172 (760)
Q Consensus 97 ~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~--~--~~~~e~~~~l~~~Rk~f~~asld 172 (760)
...++..++.||..|+ ..++.++++-++-+....+||.+..++-++..+++ + ..+..+++++..++..|...--.
T Consensus 89 ~~~~~~~vl~Pl~~~~-s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~ 167 (225)
T cd07590 89 VNLIQKTFIEPLKRLR-SVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIK 167 (225)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999998 55788888888889999999999999987764432 3 56788999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 173 LVSALTNIEAKKKYEFLES-ISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 173 yv~~i~~l~~~k~~e~l~~-l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
+...|..+-..+- .|+.+ +-+|+.+|..||..++..+.++.++++.-
T Consensus 168 L~~ELP~l~~~r~-~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~ 215 (225)
T cd07590 168 LLEELPKFYNGRT-DYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNP 215 (225)
T ss_pred HHHHhHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999988865533 56665 45899999999999999999988887654
No 149
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.09 E-value=8.9e-11 Score=129.80 Aligned_cols=122 Identities=21% Similarity=0.152 Sum_probs=103.6
Q ss_pred ccchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCC
Q 046849 612 SRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPG 691 (760)
Q Consensus 612 ~~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~ 691 (760)
.++..||.|+-+|+...+..++... +- ++. .|..|.+|||+|+..|+ .+++++++.++..+|+.+
T Consensus 48 ~gfTalhha~Lng~~~is~llle~e-a~-ldl--~d~kg~~plhlaaw~g~-----------~e~vkmll~q~d~~na~~ 112 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLDYE-AL-LDL--CDTKGILPLHLAAWNGN-----------LEIVKMLLLQTDILNAVN 112 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhcch-hh-hhh--hhccCcceEEehhhcCc-----------chHHHHHHhcccCCCccc
Confidence 3456699999999977777666654 22 444 45779999999999975 456667788888999998
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 692 NCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 692 ~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|.||||.||++||.+++.+||++|||.-+ +|+.+.|||++|++.|. .++|.+|..
T Consensus 113 --~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i------~nns~~t~ldlA~qfgr---~~Vvq~ll~ 169 (854)
T KOG0507|consen 113 --IENETPLHLAAQHGHLEVVFYLLKKNADPFI------RNNSKETVLDLASRFGR---AEVVQMLLQ 169 (854)
T ss_pred --ccCcCccchhhhhcchHHHHHHHhcCCCccc------cCcccccHHHHHHHhhh---hHHHHHHhh
Confidence 9999999999999999999999999998766 99999999999999999 999999864
No 150
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=99.06 E-value=3.8e-08 Score=106.41 Aligned_cols=109 Identities=21% Similarity=0.331 Sum_probs=76.7
Q ss_pred CCcceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCc
Q 046849 290 GEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDS 369 (760)
Q Consensus 290 ~~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (760)
+.+..+|+|.|.|.+.+ ..+-..||++|-++ ++.|-.... ..+|+ +.
T Consensus 268 PsreLiKEG~l~Kis~k-~~~~qeRylfLFNd-~~lyc~~r~-~~~~~------------------------------k~ 314 (623)
T KOG4424|consen 268 PSRELIKEGQLQKISAK-NGTTQERYLFLFND-ILLYCKPRK-RLPGS------------------------------KY 314 (623)
T ss_pred cHHHHhhccceeeeecc-CCCcceeEEEEehh-HHHhhhhhh-hcccc------------------------------ee
Confidence 34678999999999865 34789999999844 444433222 22221 11
Q ss_pred cccccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhhhh
Q 046849 370 LNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLNSD 432 (760)
Q Consensus 370 ~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~ 432 (760)
.....+.+..+.+.. .+.......|.|..+.+...|||-|+++.++||.+|+.+|.......
T Consensus 315 ~~r~~~s~~~~~v~~-~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~ 376 (623)
T KOG4424|consen 315 EVRARCSISHMQVQE-DDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCR 376 (623)
T ss_pred ccceeeccCcchhcc-cccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 113344555555554 34456788999999999999999999999999999999998766543
No 151
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.05 E-value=1.8e-10 Score=116.46 Aligned_cols=123 Identities=23% Similarity=0.242 Sum_probs=99.9
Q ss_pred hhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcC---CCCCCCC
Q 046849 616 SIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIK---DSNDPGN 692 (760)
Q Consensus 616 ~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~ga---dvn~~~~ 692 (760)
.++.+...++...+..++..+ .+ + ...+..|.||||+|+..++. .....+++..+|+.|+ +.+..|
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~~-~~-~--~~~~~~g~t~l~~a~~~~~~------~~~~~~~~~~ll~~g~~~~~~~~~~- 144 (235)
T COG0666 76 PLHSAASKGDDKIVKLLLASG-AD-V--NAKDADGDTPLHLAALNGNP------PEGNIEVAKLLLEAGADLDVNNLRD- 144 (235)
T ss_pred HHHHHHHcCcHHHHHHHHHcC-CC-c--ccccCCCCcHHHHHHhcCCc------ccchHHHHHHHHHcCCCCCCccccC-
Confidence 378888888877776666664 55 4 45778899999999998751 0112456667799999 555557
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 693 CLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 693 ~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|+||||+|+..|+.+++++|+..|++++. +|..|.|||++|+..++ .+++.+|.+
T Consensus 145 -~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~------~~~~g~t~l~~a~~~~~---~~~~~~l~~ 201 (235)
T COG0666 145 -EDGNTPLHWAALNGDADIVELLLEAGADPNS------RNSYGVTALDPAAKNGR---IELVKLLLD 201 (235)
T ss_pred -CCCCchhHHHHHcCchHHHHHHHhcCCCCcc------cccCCCcchhhhcccch---HHHHHHHHh
Confidence 8999999999999999999999999999888 89999999999999999 888777754
No 152
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.04 E-value=1.8e-10 Score=138.23 Aligned_cols=63 Identities=32% Similarity=0.354 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCC--------CCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMRARP--------SIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~--------~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|.||||+||..|+.++|++||++||++|.++.. ......|.||||+|+..|+ .+++++|++
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~---~~iv~lLl~ 196 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS---PSIVALLSE 196 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCC---HHHHHHHhc
Confidence 46999999999999999999999999999974110 0123579999999999999 999999975
No 153
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.04 E-value=7.7e-11 Score=130.29 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=101.2
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCc---------ccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDAN---------IINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDS 687 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d---------~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadv 687 (760)
+..|++.+|.+.+..+|...+.. -.+....|..|.|+||+|+.+|+.. +..+++++.+-+
T Consensus 7 l~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~-----------is~llle~ea~l 75 (854)
T KOG0507|consen 7 LIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQ-----------ISKLLLDYEALL 75 (854)
T ss_pred HHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchH-----------HHHHHhcchhhh
Confidence 88999999999999998643210 0233457789999999999998654 444567777777
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 688 NDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 688 n~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+..+ ..|.+|||+|++.|+.+++++||..++.+|+ .+..|.||||.|+.+|| .+++.+|..
T Consensus 76 dl~d--~kg~~plhlaaw~g~~e~vkmll~q~d~~na------~~~e~~tplhlaaqhgh---~dvv~~Ll~ 136 (854)
T KOG0507|consen 76 DLCD--TKGILPLHLAAWNGNLEIVKMLLLQTDILNA------VNIENETPLHLAAQHGH---LEVVFYLLK 136 (854)
T ss_pred hhhh--ccCcceEEehhhcCcchHHHHHHhcccCCCc------ccccCcCccchhhhhcc---hHHHHHHHh
Confidence 7877 8899999999999999999999999977776 99999999999999999 999999864
No 154
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.03 E-value=8.1e-10 Score=95.18 Aligned_cols=94 Identities=36% Similarity=0.710 Sum_probs=69.5
Q ss_pred EEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccc
Q 046849 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTV 375 (760)
Q Consensus 296 k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 375 (760)
++|||.++.......|++|||+|. ++.|++|....... ...+...+
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~-~~~l~~~~~~~~~~---------------------------------~~~~~~~i 46 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLF-NDLLLYYKKKSSKK---------------------------------SYKPKGSI 46 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEE-CCEEEEEECCCCCc---------------------------------CCCCcceE
Confidence 379999887544358999999999 66666666543210 01124567
Q ss_pred cccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHH
Q 046849 376 DLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 376 ~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
.+..+.+.......+.+++|.|.+.. +.|+|+|+|++|+..|+.+|+.
T Consensus 47 ~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 47 PLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred EcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 77777777644433467999999988 9999999999999999999975
No 155
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.03 E-value=8.9e-11 Score=96.34 Aligned_cols=66 Identities=33% Similarity=0.425 Sum_probs=58.3
Q ss_pred cCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 682 QRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 682 ~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|-|||..- .|+||||+||-.|+++++++|+.-||+|+. +|+.|-|||--|+-.|| .+.|++|+.
T Consensus 23 ~~g~nVn~~~---ggR~plhyAAD~GQl~ilefli~iGA~i~~------kDKygITPLLsAvwEGH---~~cVklLL~ 88 (117)
T KOG4214|consen 23 NEGLNVNEIY---GGRTPLHYAADYGQLSILEFLISIGANIQD------KDKYGITPLLSAVWEGH---RDCVKLLLQ 88 (117)
T ss_pred HccccHHHHh---CCcccchHhhhcchHHHHHHHHHhccccCC------ccccCCcHHHHHHHHhh---HHHHHHHHH
Confidence 3455666543 899999999999999999999999999998 99999999999999999 888888864
No 156
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.01 E-value=1.5e-10 Score=139.05 Aligned_cols=126 Identities=19% Similarity=0.122 Sum_probs=99.9
Q ss_pred cchhhhHHHHhcCHHHHHHHHHhcCCcccCcccC------------CCCCCccccccccccccchhhhhhcccccCCCCc
Q 046849 613 RTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFD------------DVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAG 680 (760)
Q Consensus 613 ~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~------------d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~l 680 (760)
+.+.||.|+..|+.+.+..|+..| ++ +|.... ...|.||||.|+..|+ .+++..+
T Consensus 128 G~TpLhlAa~~~~~eiVklLL~~G-Ad-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~-----------~~iv~lL 194 (743)
T TIGR00870 128 GITALHLAAHRQNYEIVKLLLERG-AS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGS-----------PSIVALL 194 (743)
T ss_pred CCcHHHHHHHhCCHHHHHHHHhCC-CC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCC-----------HHHHHHH
Confidence 345599999999988888888874 66 664211 1368999999998864 3455567
Q ss_pred ccCcCCCCCCCCCCCCChHHHHHHHcC---------CHHHHHHHHHcCCCccccCCC----CCCCCCCCcHHHHHHHcCC
Q 046849 681 CQRIKDSNDPGNCLQGGSLLHLACQCG---------NLVMLELLIQFGADINMRARP----SIKDGGGLSSLERAMEMGA 747 (760)
Q Consensus 681 l~~gadvn~~~~~~~G~TpLh~Aa~~g---------~~~~v~lLL~~GAdvn~~Ad~----~~~d~~G~TpL~~A~~~g~ 747 (760)
+++|+|+|..| ..|+||||+|+..+ ...+.++++..|+.... + +++|++|.||||+|+..|+
T Consensus 195 l~~gadin~~d--~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~---~~el~~i~N~~g~TPL~~A~~~g~ 269 (743)
T TIGR00870 195 SEDPADILTAD--SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD---SKELEVILNHQGLTPLKLAAKEGR 269 (743)
T ss_pred hcCCcchhhHh--hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC---hHhhhhhcCCCCCCchhhhhhcCC
Confidence 89999999999 89999999999987 34577888888877532 2 5589999999999999999
Q ss_pred CChHHHHHHhhc
Q 046849 748 ITDEELFILLAE 759 (760)
Q Consensus 748 ~~~~eiv~lL~~ 759 (760)
.+++++|++
T Consensus 270 ---~~l~~lLL~ 278 (743)
T TIGR00870 270 ---IVLFRLKLA 278 (743)
T ss_pred ---ccHHHHHHH
Confidence 888888764
No 157
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=6.5e-10 Score=117.76 Aligned_cols=116 Identities=19% Similarity=0.160 Sum_probs=91.2
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
|+.|+-.|.++.|.+.+..- -+....+..|-||||-|+..|| .+++++||+.|+|||+.| .+|
T Consensus 554 LLDaaLeGEldlVq~~i~ev----~DpSqpNdEGITaLHNAiCagh-----------yeIVkFLi~~ganVNa~D--SdG 616 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEV----TDPSQPNDEGITALHNAICAGH-----------YEIVKFLIEFGANVNAAD--SDG 616 (752)
T ss_pred HHhhhhcchHHHHHHHHHhh----cCCCCCCccchhHHhhhhhcch-----------hHHHHHHHhcCCcccCcc--CCC
Confidence 88999999999999888763 2233345579999999988875 446677899999999999 999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHH--HcCCCChHHHHHHh
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAM--EMGAITDEELFILL 757 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~--~~g~~~~~eiv~lL 757 (760)
|||||.||..+++.+|+.|++.||-|-+ .+=.++.||..-+- +.|. .....+|
T Consensus 617 WTPLHCAASCNnv~~ckqLVe~GaavfA-----sTlSDmeTa~eKCee~eeGY---~~CsqyL 671 (752)
T KOG0515|consen 617 WTPLHCAASCNNVPMCKQLVESGAAVFA-----STLSDMETAAEKCEEMEEGY---DQCSQYL 671 (752)
T ss_pred CchhhhhhhcCchHHHHHHHhccceEEe-----eecccccchhhhcchhhhhH---HHHHHHH
Confidence 9999999999999999999999998865 24577888887543 3466 4445555
No 158
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.01 E-value=3.3e-08 Score=99.69 Aligned_cols=198 Identities=14% Similarity=0.210 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hchHHHHHHHHH--------hhCCC-CCCCccccchhH
Q 046849 10 SPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVAC--SGDSAFADALEA--------FGGGH-DDPVSVSIGGPV 78 (760)
Q Consensus 10 SP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~--~~~~~~~~~l~~--------~~~~~-~d~~~~~~~~~~ 78 (760)
-|-++.+++.+-..+..--.||.+.......=..-.+... ..=..|..+|.. |+... .|.. .+ +.+
T Consensus 32 P~n~~es~~~~~~~~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~aLs~~m~~~~~~l~~~~~~~~s--~l-g~a 108 (242)
T cd07600 32 PPNLTESISDFSKTIGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNHALSRAALASSLELKSLEPEDED--PL-SKA 108 (242)
T ss_pred CCCchHHHHHHHHhhHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHhCccCCCCCC--HH-HHH
Confidence 5788999999988877666666665543222100000000 001344444432 44321 1222 23 479
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHH
Q 046849 79 ISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEED 158 (760)
Q Consensus 79 l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~ 158 (760)
|.+||.+..+|...+..+-..+...++.||++|+.++|+.+...||+.+..+-+||.+..++.+.++. +...+...+
T Consensus 109 L~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~---~k~~~~~~e 185 (242)
T cd07600 109 LGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPA---EKQEAARVE 185 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997655432 222234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 159 LQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 159 l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
+..+...|..+.-+-+..|..+-.. .+.+..|..|+.+|..||+++.+.+.++.+
T Consensus 186 ~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~ 240 (242)
T cd07600 186 VETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLS 240 (242)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6678888888888888888888544 689999999999999999999999987754
No 159
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.00 E-value=4.9e-10 Score=118.50 Aligned_cols=121 Identities=21% Similarity=0.450 Sum_probs=101.5
Q ss_pred chHHHHHHhcCCCCCccccCCCCCC-CeEEeccceeEccchhhHhhcCCCCccceeEeccCCCCCCHHHHHHHHhhchHH
Q 046849 473 SDSVSAILRQIPGNDLCAECSAPDP-DWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFGSLGNAY 551 (760)
Q Consensus 473 ~~~~~~~~~~~~~n~~C~dC~~~~p-~w~s~n~g~~~C~~Csg~Hr~lg~~~s~v~s~~ld~~~w~~~~~~~~~~~GN~~ 551 (760)
.+..++.++++|+|++|++|....+ +|+++.-|.|||..|+|.-|.| ..-++|+|+.|- .++..++..++..||..
T Consensus 12 ~ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l-~~ahRvksiSmt--tft~qevs~lQshgNq~ 88 (524)
T KOG0702|consen 12 YEKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGL-NPAHRVKSISMT--TFTDQEVSFLQSHGNQV 88 (524)
T ss_pred HHHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccC-CCccccceeeee--eccccchHHHhhcchhh
Confidence 4788999999999999999999888 9999999999999999999999 567899999998 68999999999999999
Q ss_pred HHHHHhccccCccccccCCCCCCCCcCCCCCCCcHHHHHHHHHHHHhhhhhhhcCCCC
Q 046849 552 CNSIWEGLLLLKDREVDKSNTTIPSVRKPCSKDVFHYKEQYINAKYVEKLLVIRDTSD 609 (760)
Q Consensus 552 ~n~~~e~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~~ 609 (760)
+.+||-....... ..-|...++ ..-+.|++.||+.++|..+....
T Consensus 89 ~k~i~fkl~D~q~------------S~vPD~rn~-~~~kef~q~~y~~kr~~v~~n~~ 133 (524)
T KOG0702|consen 89 CKEIWFKLFDFQR------------SNVPDSRNP-QKVKEFQQEKYVKKRYYVPKNQM 133 (524)
T ss_pred hhhhhhcchhhhh------------ccCCCcccc-hhhHHHHhhhhccceeecCcccc
Confidence 9999987665532 112333333 34567999999999998776653
No 160
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.00 E-value=2.2e-10 Score=134.43 Aligned_cols=85 Identities=27% Similarity=0.382 Sum_probs=74.7
Q ss_pred cccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCC
Q 046849 653 SYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKD 732 (760)
Q Consensus 653 ~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d 732 (760)
.||.|+..|+. ..+..|+++|+|+|..| .+|+||||+||..|+.++|++||.+||++|. +|
T Consensus 85 ~L~~aa~~G~~-----------~~vk~LL~~Gadin~~d--~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~------~d 145 (664)
T PTZ00322 85 ELCQLAASGDA-----------VGARILLTGGADPNCRD--YDGRTPLHIACANGHVQVVRVLLEFGADPTL------LD 145 (664)
T ss_pred HHHHHHHcCCH-----------HHHHHHHHCCCCCCCcC--CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC------CC
Confidence 46677777643 34455688999999998 8999999999999999999999999999888 99
Q ss_pred CCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 733 GGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 733 ~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..|.||||+|+..|+ .+++++|++
T Consensus 146 ~~G~TpLh~A~~~g~---~~iv~~Ll~ 169 (664)
T PTZ00322 146 KDGKTPLELAEENGF---REVVQLLSR 169 (664)
T ss_pred CCCCCHHHHHHHCCc---HHHHHHHHh
Confidence 999999999999999 999999864
No 161
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.97 E-value=3.8e-09 Score=87.47 Aligned_cols=92 Identities=22% Similarity=0.336 Sum_probs=67.9
Q ss_pred eeEEEEEEeeCCCC-CCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 294 TIKQGYLLKRSSNL-RGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 294 ~~k~G~L~K~~~~~-~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
+++.|||.-..-++ +++=|+|||||. ...||||++.+++.+ .
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt-~~~L~wykd~eeKE~------------------------------------k 43 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLT-SESLSWYKDDEEKEK------------------------------------K 43 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEe-cceeeeecccccccc------------------------------------c
Confidence 36789998765443 445799999999 778888887655332 2
Q ss_pred ccccccCceeccCCCC--CCCCceEEEEecC--------ceeEEEcCCHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGED--TDLRLCFRIISPV--------KTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~--~~~~~~F~i~~~~--------~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
..|.|....++. .++ ..++|||+|..|+ +++.|.|+|.+|.+.|...+-.
T Consensus 44 yilpLdnLk~Rd-ve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflr 103 (110)
T cd01256 44 YMLPLDGLKLRD-IEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLR 103 (110)
T ss_pred ceeeccccEEEe-ecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHh
Confidence 355666655554 333 5678999999876 5789999999999999876643
No 162
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.96 E-value=5.7e-09 Score=90.99 Aligned_cols=100 Identities=24% Similarity=0.304 Sum_probs=72.3
Q ss_pred ceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEec-CCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccc
Q 046849 293 QTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRN-KGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLN 371 (760)
Q Consensus 293 ~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (760)
..+++|-|.|-. ++.-+.|||+|-++ .|.|-+. ..... -..
T Consensus 3 ~li~eG~L~K~~---rk~~~~R~ffLFnD-~LvY~~~~~~~~~----------------------------------~~~ 44 (104)
T cd01218 3 VLVGEGVLTKMC---RKKPKQRQFFLFND-ILVYGNIVISKKK----------------------------------YNK 44 (104)
T ss_pred EEEecCcEEEee---cCCCceEEEEEecC-EEEEEEeecCCce----------------------------------eeE
Confidence 357899999986 45678899999955 4444221 11000 011
Q ss_pred cccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhh
Q 046849 372 CRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLN 430 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 430 (760)
...++|..+.|....++.+-+++|.|.++.++|+++|+|++|+.+||++|+.+|..++.
T Consensus 45 ~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~ 103 (104)
T cd01218 45 QHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE 103 (104)
T ss_pred eeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence 33567777766653344456799999999999999999999999999999999987764
No 163
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.93 E-value=3.3e-07 Score=91.17 Aligned_cols=192 Identities=16% Similarity=0.187 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhh-----hchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHH-H
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEAL--GVAC-----SGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAF-R 87 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~--~~~~-----~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l-~ 87 (760)
-+...|.+++..+..+..+.|....|.+.. -++. .....+++++.+.+....++. .+ +.+| .++..+ +
T Consensus 16 dl~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~~Ls~~M~es~keLg~dS--~l-g~aL-e~~~~~e~ 91 (257)
T cd07620 16 DLVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLMALSISMAESFKDFDAES--SI-RRVL-EMCCFMQN 91 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHhHHHHHHHHHHhhCCCcc--hH-HHHH-HHHHHHHH
Confidence 456678888888888888877777665531 1111 113466777777765554432 23 3677 666666 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---------------------
Q 046849 88 ELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKN--------------------- 146 (760)
Q Consensus 88 el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~--------------------- 146 (760)
.|+.....+-..++..|+.||+++..++|+.+...||++.+...+||.+..||.+..|+
T Consensus 92 ~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~ 171 (257)
T cd07620 92 MLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRAN 171 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccc
Confidence 99998889999999999999999999999999999999999999999999999654331
Q ss_pred C---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 046849 147 T---RDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQ 219 (760)
Q Consensus 147 k---~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~ 219 (760)
| ..+.+.++.+.+.+.|-.|...++.++. + ..+++..++.|+.+|..|.+++.++++.+.|-|++
T Consensus 172 K~~~lkeE~eea~~K~E~~kd~~~a~Mynfl~-------k-E~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 172 KGEPLKEEEEECWRKLEQCKDQYSADLYHFAT-------K-EDSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233455555566666665555554443 2 45899999999999999999999998776665544
No 164
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.93 E-value=7.3e-10 Score=130.05 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=88.0
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
|+.|+..|+.+.+..|+..| ++ +| ..|..|.||||+|+..|+. +++..|+++|+|+|..| ..|
T Consensus 86 L~~aa~~G~~~~vk~LL~~G-ad-in--~~d~~G~TpLh~Aa~~g~~-----------eiv~~LL~~Gadvn~~d--~~G 148 (664)
T PTZ00322 86 LCQLAASGDAVGARILLTGG-AD-PN--CRDYDGRTPLHIACANGHV-----------QVVRVLLEFGADPTLLD--KDG 148 (664)
T ss_pred HHHHHHcCCHHHHHHHHHCC-CC-CC--CcCCCCCcHHHHHHHCCCH-----------HHHHHHHHCCCCCCCCC--CCC
Confidence 88899999999888888775 55 55 4677899999999999753 45566789999999999 999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCCCCCCcHHHHHH
Q 046849 697 GSLLHLACQCGNLVMLELLIQFG-ADINMRARPSIKDGGGLSSLERAM 743 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~G-Advn~~Ad~~~~d~~G~TpL~~A~ 743 (760)
+||||+|+..|+.+++++|+.++ ++++..|+++..+..|.+|+..+.
T Consensus 149 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred CCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 99999999999999999999991 111111334448888988887554
No 165
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.91 E-value=9e-09 Score=89.22 Aligned_cols=92 Identities=27% Similarity=0.566 Sum_probs=64.7
Q ss_pred EEEEEeeCCCC---CCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 297 QGYLLKRSSNL---RGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 297 ~G~L~K~~~~~---~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
+|||.+++... ...|++|||+|. ++.|+||+.+...... ..
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~-~~~l~~~~~~~~~~~~-----------------------------------~~ 45 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLF-DDGLLLYKSDDKKEIK-----------------------------------PG 45 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEE-CCEEEEEEcCCCCcCC-----------------------------------CC
Confidence 69999887654 368999999998 6677777765432110 01
Q ss_pred cccccCceeccCCCCCCCCceEEEEec---CceeEEEcCCHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISP---VKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~---~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.+.+....+....+..+.+++|.|+.. .+.+.|+|+|++|++.|+.+|+.+
T Consensus 46 ~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 46 SIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred EEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 234433333332222246799999988 688999999999999999999753
No 166
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.91 E-value=1.5e-09 Score=121.91 Aligned_cols=124 Identities=21% Similarity=0.293 Sum_probs=101.6
Q ss_pred chhhhHHHHhcCHHHHHHHHHhcCCcccCccc-------CC--------------CCCCccccccccccccchhhhhhcc
Q 046849 614 TTSIWEAVKTQNLQEVYRLIVTSDANIINTTF-------DD--------------VVGVDSYHHVDNTQYSEIDFHKVKK 672 (760)
Q Consensus 614 ~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~-------~d--------------~~g~t~Lh~A~~~g~~~~~~~~~~~ 672 (760)
.+.||.||.+.|.+.|..|+.. |+| |+... .| -.|..||..||-.+
T Consensus 185 qSaLHiAIv~~~~~~V~lLl~~-gAD-V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n----------- 251 (782)
T KOG3676|consen 185 QSALHIAIVNRDAELVRLLLAA-GAD-VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN----------- 251 (782)
T ss_pred cchHHHHHHhccHHHHHHHHHc-CCc-hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcC-----------
Confidence 3459999999999888888887 477 66521 11 14778898887664
Q ss_pred cccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHH
Q 046849 673 EENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEE 752 (760)
Q Consensus 673 ~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~e 752 (760)
..+++..|+++|||+|++| .+|+|.||..+.+-..++-.++|.+||+ +..+++|++|-|||.+|+..|. .+
T Consensus 252 q~eivrlLl~~gAd~~aqD--S~GNTVLH~lVi~~~~~My~~~L~~ga~----~l~~v~N~qgLTPLtLAaklGk---~e 322 (782)
T KOG3676|consen 252 QPEIVRLLLAHGADPNAQD--SNGNTVLHMLVIHFVTEMYDLALELGAN----ALEHVRNNQGLTPLTLAAKLGK---KE 322 (782)
T ss_pred CHHHHHHHHhcCCCCCccc--cCCChHHHHHHHHHHHHHHHHHHhcCCC----ccccccccCCCChHHHHHHhhh---HH
Confidence 4456667799999999999 9999999999999999999999999999 2345599999999999999999 88
Q ss_pred HHHHhhc
Q 046849 753 LFILLAE 759 (760)
Q Consensus 753 iv~lL~~ 759 (760)
|...+++
T Consensus 323 mf~~ile 329 (782)
T KOG3676|consen 323 MFQHILE 329 (782)
T ss_pred HHHHHHH
Confidence 8877654
No 167
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.89 E-value=1.5e-06 Score=87.60 Aligned_cols=197 Identities=18% Similarity=0.329 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHH-HHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATY-KEL 95 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~-~~~ 95 (760)
.+..|.....++.-+++|.|.++.|.+++.....++..+++.|..+-....+... ......|...++++... ...
T Consensus 13 F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~~----~~~~~~y~~~v~~l~~~~~~e 88 (224)
T cd07591 13 FEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKDG----AMLSQEYKQAVEELDAETVKE 88 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccH----hHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999999999987643322210 12345666666666542 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 96 LRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKN--TRDDIVAELEEDLQNSKSAFEKSRFNL 173 (760)
Q Consensus 96 l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~--k~~~~~~e~~~~l~~~Rk~f~~asldy 173 (760)
+...+...++.|+..|+ ..+++++..=++-+...-+||.+..++-++..+ +.+..+..++.+|..++..|...--.+
T Consensus 89 l~~~~~~~V~~Pl~~~~-~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~L 167 (224)
T cd07591 89 LDGPYRQTVLDPIGRFN-SYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQL 167 (224)
T ss_pred HHhHHHHHHHHHHHHHH-HHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44447889999999997 557888877777778888899998888777543 345667889999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 046849 174 VSALTNIEAKKKYEFLESIS-AIMDVHLRYFKLGFDLLSKIEPYVHQ 219 (760)
Q Consensus 174 v~~i~~l~~~k~~e~l~~l~-~~~~a~~~ff~~g~~~~~~~~~~~~~ 219 (760)
...|..+-...- .|+.+++ +++..|.+||.+++..+.++..++..
T Consensus 168 k~ELP~l~~~r~-~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~ 213 (224)
T cd07591 168 KTELPQLVDLRI-PYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA 213 (224)
T ss_pred HHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 999998876543 5666554 88999999999999998888777664
No 168
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.88 E-value=2e-09 Score=97.73 Aligned_cols=91 Identities=27% Similarity=0.325 Sum_probs=79.0
Q ss_pred CCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccC
Q 046849 647 DVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRA 726 (760)
Q Consensus 647 d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~A 726 (760)
+..|.||||.|+..++. +.+..++..|++++..+ ..|.||||+|+..++.+++++|+..|++++.
T Consensus 4 ~~~g~t~l~~a~~~~~~-----------~~i~~li~~~~~~~~~~--~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~-- 68 (126)
T cd00204 4 DEDGRTPLHLAASNGHL-----------EVVKLLLENGADVNAKD--NDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-- 68 (126)
T ss_pred CcCCCCHHHHHHHcCcH-----------HHHHHHHHcCCCCCccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCccc--
Confidence 35699999999998743 34455678888887777 8999999999999999999999999998877
Q ss_pred CCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 727 RPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 727 d~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.|..|.||+|+|+..++ .+++++|..
T Consensus 69 ----~~~~~~~~l~~a~~~~~---~~~~~~L~~ 94 (126)
T cd00204 69 ----RDKDGNTPLHLAARNGN---LDVVKLLLK 94 (126)
T ss_pred ----cCCCCCCHHHHHHHcCc---HHHHHHHHH
Confidence 88999999999999999 889888864
No 169
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.87 E-value=2.8e-10 Score=87.74 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=42.5
Q ss_pred CCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 046849 650 GVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLI 716 (760)
Q Consensus 650 g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL 716 (760)
|.||||.|+..|+. +++..++++|+|+|.+| .+|+||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~g~~-----------~~~~~Ll~~~~din~~d--~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNL-----------EIVKLLLEHGADINAQD--EDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-H-----------HHHHHHHHTTSGTT-B---TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCH-----------HHHHHHHHCCCCCCCCC--CCCCCHHHHHHHccCHHHHHHHC
Confidence 68999999998754 34556688999999998 99999999999999999999997
No 170
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=98.85 E-value=3.3e-06 Score=83.61 Aligned_cols=193 Identities=15% Similarity=0.234 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELL 96 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l 96 (760)
....|.....++.-.++|.|..+.|.+++.....++..|+++|.++-...-. |..-+....+... .....+
T Consensus 14 Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~------~~~~~~~v~e~~d---~~~~~l 84 (211)
T cd07588 14 FDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWP------GREHLASIFEQLD---LLWNDL 84 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc------cHHHHHHHHHHHH---HHHHHH
Confidence 3566777788889999999999999999999999999999999887632211 1112222333333 334446
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 97 RSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKN--TRDDIVAELEEDLQNSKSAFEKSRFNLV 174 (760)
Q Consensus 97 ~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~--k~~~~~~e~~~~l~~~Rk~f~~asldyv 174 (760)
...+...++.||..|+ ..++.++..=++=+....+||++..++.++..+ ++...+..++++|..++..|...--.+.
T Consensus 85 ~~~l~~~Vl~Pl~~~~-s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~L~ 163 (211)
T cd07588 85 EEKLSDQVLGPLTAYQ-SQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTELH 163 (211)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667889999999997 556777766666677788899999999887654 4456688999999999999999988999
Q ss_pred HHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 175 SALTNIEAKKKYEFLES-ISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 175 ~~i~~l~~~k~~e~l~~-l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
..|..+-..+- .|+.+ +-+++.+|..|+.....++.++...++.+
T Consensus 164 ~ELP~L~~~ri-~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~l 209 (211)
T cd07588 164 EELPALYDSRI-AFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDGL 209 (211)
T ss_pred HHhHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988865533 45555 45889999999998888877777666554
No 171
>PF13606 Ank_3: Ankyrin repeat
Probab=98.84 E-value=3.1e-09 Score=70.54 Aligned_cols=30 Identities=40% Similarity=0.748 Sum_probs=28.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINM 724 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~ 724 (760)
+|+||||+||..|+.++|++||++|||||+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 599999999999999999999999999884
No 172
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.84 E-value=1.2e-06 Score=88.49 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC---CCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG---GHDDPVSVSIGGPVISKFISAFRELATYKELLRSQV 100 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~---~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~ 100 (760)
++.++=.+++|++.+++|..++..+..+...|.++|..+++ .... ...+ |.+|.+++..++.+...+..+...+
T Consensus 5 ~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~--s~~l-G~~L~~~s~~~r~i~~~~~~~~~~~ 81 (219)
T PF08397_consen 5 MEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRG--SKEL-GDALMQISEVHRRIENELEEVFKAF 81 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--cccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999998873 2222 3344 4899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCCC---hh---hHHHHHHHHHHHHHHHHHHH
Q 046849 101 EHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKF----VSLKKNTR---DD---IVAELEEDLQNSKSAFEKSR 170 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky----~s~~k~k~---~~---~~~e~~~~l~~~Rk~f~~as 170 (760)
...++.||+..++.+.+-+.+..|.|++..+..-..+.|- ..+.|+.+ +. .+.+.-.++......|.. -
T Consensus 82 ~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~-~ 160 (219)
T PF08397_consen 82 HSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEE-F 160 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHH-H
Confidence 9999999999999999999888888888777777766664 34555433 11 233343344444444443 4
Q ss_pred HHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 171 FNLVSALTNIEAKKKYE-FLESISAIMDVHLRYFKLGFDLLSKI 213 (760)
Q Consensus 171 ldyv~~i~~l~~~k~~e-~l~~l~~~~~a~~~ff~~g~~~~~~~ 213 (760)
.....+-..++++++|- |++.+..++.....|+.++.+++.+.
T Consensus 161 ~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~ 204 (219)
T PF08397_consen 161 EKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEK 204 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666788888887 68899999999999999988877643
No 173
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.83 E-value=8.2e-09 Score=104.38 Aligned_cols=107 Identities=24% Similarity=0.397 Sum_probs=73.5
Q ss_pred CCcceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCc
Q 046849 290 GEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDS 369 (760)
Q Consensus 290 ~~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (760)
....++|+|||.||+..++ +|..|||+|.++|.|.-|+.+.+... ...
T Consensus 11 ~~~~vvkEgWlhKrGE~Ik-nWRpRYF~l~~DG~~~Gyr~kP~~~~-------------------------------~~p 58 (516)
T KOG0690|consen 11 SQEDVVKEGWLHKRGEHIK-NWRPRYFLLFNDGTLLGYRSKPKEVQ-------------------------------PTP 58 (516)
T ss_pred chhhhHHhhhHhhcchhhh-cccceEEEEeeCCceEeeccCCccCC-------------------------------CCc
Confidence 3467889999999987665 99999999999998887775433110 000
Q ss_pred cccccccccCceeccCCCCCCCCceEEEEecCce----eEEEcCCHHHHHHHHHHHHHHHHHhhh
Q 046849 370 LNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKT----YTLQAETEADRMDWTSKITGVIASLLN 430 (760)
Q Consensus 370 ~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~----~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 430 (760)
.+...+.+..|.+-. -+..|++.|-|-.-+-| .+|.++|.+++++|++||+.+-..+..
T Consensus 59 ~pLNnF~v~~cq~m~--~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~q 121 (516)
T KOG0690|consen 59 EPLNNFMVRDCQTMK--TERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLKQ 121 (516)
T ss_pred ccccchhhhhhhhhh--ccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhhh
Confidence 111223344444332 33467899998876632 689999999999999999977654443
No 174
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=98.82 E-value=3.5e-06 Score=85.05 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCC----CCCCcccc---chhHHHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGH----DDPVSVSI---GGPVISKFISAFRE 88 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~----~d~~~~~~---~~~~l~~f~~~l~e 88 (760)
.+..++.+...+++-+++|.+.++.|.++.......+..|+..+..+-... .+...... +-..+..+...+++
T Consensus 3 ~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 82 (216)
T cd07599 3 QFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEE 82 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999888888889988888765321 11110000 00235566666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCC-----ChhhHHHHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVS-LKKNT-----RDDIVAELEEDLQNS 162 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s-~~k~k-----~~~~~~e~~~~l~~~ 162 (760)
+..........+...++.|+..+.. .+++++..=++=++...+||.+..++.+ +.+++ +...+..++.+|..+
T Consensus 83 l~~~~~~~l~~i~~~V~~P~~~~~~-~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a 161 (216)
T cd07599 83 LKKELLEELEFFEERVILPAKELKK-YIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEA 161 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHH
Confidence 6655555567888999999999985 6788887777777788889999998888 65542 244567788899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 046849 163 KSAFEKSRFNLVSALTNIEAKKKYEFLESIS-AIMDVHLRYFKLGFDLLSKI 213 (760)
Q Consensus 163 Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~-~~~~a~~~ff~~g~~~~~~~ 213 (760)
+..|...--.+...|..+-.... +|+++++ .|+..|.+||...+..+..+
T Consensus 162 ~~~y~~lN~~Lk~eLP~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~l~~~ 212 (216)
T cd07599 162 KEEYEALNELLKSELPKLLALAD-EFLPPLFKSFYYIQLNIYYTLHEYLQEF 212 (216)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988888888888876655 7888776 77888999999888876654
No 175
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.82 E-value=5.7e-09 Score=87.19 Aligned_cols=94 Identities=22% Similarity=0.369 Sum_probs=63.9
Q ss_pred eEEEEEEeeCCCCCCCceeeEEEEecCce----EEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcc
Q 046849 295 IKQGYLLKRSSNLRGDWKRRFFVLNSQGT----LYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSL 370 (760)
Q Consensus 295 ~k~G~L~K~~~~~~~~W~rR~fvl~~~~~----l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (760)
.++|||.|.++..-+.||||||+|..-.. +.-|+.+.. .
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-------------------------------------~ 45 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-------------------------------------E 45 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-------------------------------------C
Confidence 37999999998666799999999973111 111332222 2
Q ss_pred ccccccccCceeccCCCC----------CCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 371 NCRTVDLRTSAIKMDGED----------TDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 371 ~~~~i~l~~~~v~~~~~~----------~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
|.+.|.|...+|...... ...||-|..+-.+-+..|..++|.|+.-||++|-.|.
T Consensus 46 P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 46 PTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred chhheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 234455555444432111 1456889888888899999999999999999998764
No 176
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.80 E-value=4.8e-06 Score=82.66 Aligned_cols=193 Identities=15% Similarity=0.238 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKEL 95 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~ 95 (760)
..+...+.|+.+++.+.+|......|+....++......|+.++..+++.. + ..+ ...|..|++.+..+.+++..
T Consensus 5 ~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E-~---~~L-~~~L~~lae~~~~i~d~~q~ 79 (211)
T cd07598 5 QTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE-N---PSL-KQGLKNFAECLAALQDYRQA 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-C---HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999998888888888888889999999988654 1 222 26799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CChh--hHHHHHHHHHHHHHHHHHHH
Q 046849 96 LRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKN---TRDD--IVAELEEDLQNSKSAFEKSR 170 (760)
Q Consensus 96 l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~---k~~~--~~~e~~~~l~~~Rk~f~~as 170 (760)
-+.++...+++||..|.. .++.+++.+|. .+..++..+.+..++.|- .+++ .+.+++.+|..++..|...+
T Consensus 80 qv~~l~~~v~epLk~Y~~-l~k~~k~~~K~---~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s 155 (211)
T cd07598 80 EVERLEAKVVQPLALYGT-ICKHARDDLKN---TFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDANRST 155 (211)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999974 45666666663 333333333333333221 2222 34478999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 171 FNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 171 ldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
-..-..|..++..+--+|=..+.+|+.++..|..+..++|...-..+
T Consensus 156 ~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~ 202 (211)
T cd07598 156 KELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDI 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887778888888999999999988888766543333
No 177
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-06 Score=87.38 Aligned_cols=183 Identities=18% Similarity=0.340 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch-----------------------HHHHHHHHHhhCCCCCCCcc
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGD-----------------------SAFADALEAFGGGHDDPVSV 72 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~~d~~~~ 72 (760)
....+|.+++....-+.++...+..|++- +-++.+. .-+.+++..+|....+..
T Consensus 27 dF~eme~~vdvt~~~v~~i~~~tteylqp-npa~rakl~~~n~lsKvrG~~k~~~ypq~e~~Lg~~mik~gkeLg~dS-- 103 (366)
T KOG1118|consen 27 DFLEMEKEVDVTSKGVTKILAKTTEYLQP-NPASRAKLAMLNTLSKVRGQVKEKGYPQTEGLLGDVMIKHGKELGDDS-- 103 (366)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhHHhcCC-ChhhhhHHHHHHHHHHhcccccCCCCccchhHHHHHHHHHHHhcCCCc--
Confidence 45789999999999999999999998872 1122222 235555555554444433
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhH
Q 046849 73 SIGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIV 152 (760)
Q Consensus 73 ~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~ 152 (760)
++ |.+|...++++.+|......|...+...++.||+++-..+++++...||+.|-.+..||....| +.| .+.
T Consensus 104 s~-g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk---~~K-~~d--- 175 (366)
T KOG1118|consen 104 SF-GHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKK---QGK-IKD--- 175 (366)
T ss_pred cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHH---hcc-CCh---
Confidence 33 3689999999999999999999999999999999998899999999999999999999975443 222 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 153 AELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIE 214 (760)
Q Consensus 153 ~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~ 214 (760)
++|..|+..|.+.--..-..|..+... +.|-+..|..++.+|++|+++..++++.+.
T Consensus 176 ----EelrqA~eKfEESkE~aE~sM~nlle~-d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~ 232 (366)
T KOG1118|consen 176 ----EELRQALEKFEESKELAEDSMFNLLEN-DVEQVSQLSALIQAQLDFHRQSTQILQELQ 232 (366)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544322222334434332 568899999999999999999999887654
No 178
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.71 E-value=8.9e-09 Score=115.85 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=91.4
Q ss_pred hhHHHHh--cCH-HHHHHHHHhcCCcccCcccCC--CCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCC--
Q 046849 617 IWEAVKT--QNL-QEVYRLIVTSDANIINTTFDD--VVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSND-- 689 (760)
Q Consensus 617 L~~A~~~--~~~-~~v~~ll~~g~~d~~n~~~~d--~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~-- 689 (760)
||.|+-+ ... +.+..||.- .+.++|..+.+ -.|.||||+|+.+. ..+++..|++.||||++
T Consensus 147 Lh~~lL~~~~~~n~la~~LL~~-~p~lind~~~~eeY~GqSaLHiAIv~~-----------~~~~V~lLl~~gADV~aRa 214 (782)
T KOG3676|consen 147 LHKALLNLSDGHNELARVLLEI-FPKLINDIYTSEEYYGQSALHIAIVNR-----------DAELVRLLLAAGADVHARA 214 (782)
T ss_pred HHHHHhcCchhHHHHHHHHHHH-hHHHhhhhhhhHhhcCcchHHHHHHhc-----------cHHHHHHHHHcCCchhhHh
Confidence 7777752 233 445555544 33446654443 38999999999874 45677778999999985
Q ss_pred -------CCC------------CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCCh
Q 046849 690 -------PGN------------CLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITD 750 (760)
Q Consensus 690 -------~~~------------~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~ 750 (760)
.|+ -..|..||-+||..++.+|+++|+++|||+|+ +|..|+|-||..+..-.
T Consensus 215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a------qDS~GNTVLH~lVi~~~--- 285 (782)
T KOG3676|consen 215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA------QDSNGNTVLHMLVIHFV--- 285 (782)
T ss_pred hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc------cccCCChHHHHHHHHHH---
Confidence 221 12478999999999999999999999999887 99999999999888755
Q ss_pred HHHHHHhhc
Q 046849 751 EELFILLAE 759 (760)
Q Consensus 751 ~eiv~lL~~ 759 (760)
.++..++++
T Consensus 286 ~~My~~~L~ 294 (782)
T KOG3676|consen 286 TEMYDLALE 294 (782)
T ss_pred HHHHHHHHh
Confidence 677666653
No 179
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.70 E-value=1.5e-05 Score=80.28 Aligned_cols=182 Identities=15% Similarity=0.213 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
.++.+......|++.++.|...+..+...+..|.+.|.+.+.-.-. ..+ +..+..||++++-+......|...+..
T Consensus 41 ~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~---~~l-~~~f~~~~~~~~~~~~~~~~L~~~l~~ 116 (229)
T PF06456_consen 41 LLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKS---PAL-GEEFSANGEAQRSLAKQGETLLKALKR 116 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----CCG-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555788899999999999999999999999999988852111 122 367999999999999999998888766
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCh------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 103 VLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRD------DIVAELEEDLQNSKSAFEKSRFNLVSA 176 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~------~~~~e~~~~l~~~Rk~f~~asldyv~~ 176 (760)
. +.-|..|+...|...+..=++|+.++.+||+++.+.-.++....| ...+.+..+...+|..|..-+.|...+
T Consensus 117 ~-~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~K 195 (229)
T PF06456_consen 117 F-LSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVK 195 (229)
T ss_dssp H-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 456999999999999999999999999999999999888844333 334677778889999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 177 LTNIEAKKKYEFLESISAIMDVHLRYFKLGFDL 209 (760)
Q Consensus 177 i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~ 209 (760)
|..|..++--.+...|..|..+...||....+.
T Consensus 196 l~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~ 228 (229)
T PF06456_consen 196 LDLLDENRVNVMSHQLVLFQNALAAYFSGNAQA 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999888889999999999999999876654
No 180
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.69 E-value=9.4e-06 Score=78.62 Aligned_cols=186 Identities=14% Similarity=0.197 Sum_probs=148.2
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 046849 20 MEESAEE---LKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELL 96 (760)
Q Consensus 20 ~e~~l~~---l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l 96 (760)
+|.+++. +......|++.++.|...+-.....+..|.+.|..++.-..+. ...+..|+++.+.+...-..|
T Consensus 4 LeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p~l------~~af~~~aet~k~l~kng~~L 77 (201)
T cd07660 4 LEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSPEL------QEEFTYNAETQKLLCKNGETL 77 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH------HHHHHHHHHHHHHHHHhHHHH
Confidence 4445444 4558889999999999999999999999999998887422221 146888999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----ChhhHHHHHHHHHHHHHHHHHHHHH
Q 046849 97 RSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNT----RDDIVAELEEDLQNSKSAFEKSRFN 172 (760)
Q Consensus 97 ~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k----~~~~~~e~~~~l~~~Rk~f~~asld 172 (760)
...+... +..|+.|+...|......-++|+.++.+||+.+.....+.-.. +.....++..+...+|..|.+-.-|
T Consensus 78 l~al~~f-~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~kf~KLR~D 156 (201)
T cd07660 78 LGALNFF-VSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDKYEKLRND 156 (201)
T ss_pred HHHHHHH-HHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544 5669999999999999999999999999999986655433221 2234566777889999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 173 LVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 173 yv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
.+.+|.-+...+--.+..+|..|..|...||....+.++.
T Consensus 157 V~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~ 196 (201)
T cd07660 157 VSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQ 196 (201)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999998887789999999999999999887777654
No 181
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.68 E-value=1.6e-08 Score=102.13 Aligned_cols=93 Identities=28% Similarity=0.328 Sum_probs=78.4
Q ss_pred CCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC
Q 046849 646 DDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGN-----LVMLELLIQFGA 720 (760)
Q Consensus 646 ~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~-----~~~v~lLL~~GA 720 (760)
.+..+.+++|.++..+... .+..++..|++++..+ ..|.||||+|+..|+ .+++++||..|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~ 135 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDK-----------IVKLLLASGADVNAKD--ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135 (235)
T ss_pred CCccccCHHHHHHHcCcHH-----------HHHHHHHcCCCccccc--CCCCcHHHHHHhcCCcccchHHHHHHHHHcCC
Confidence 4556889999998876433 2245588999999999 999999999999999 999999999999
Q ss_pred --CccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 721 --DINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 721 --dvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+++. .+|..|.||||+|+..|+ .+++.+|++
T Consensus 136 ~~~~~~-----~~~~~g~tpl~~A~~~~~---~~~~~~ll~ 168 (235)
T COG0666 136 DLDVNN-----LRDEDGNTPLHWAALNGD---ADIVELLLE 168 (235)
T ss_pred CCCCcc-----ccCCCCCchhHHHHHcCc---hHHHHHHHh
Confidence 3332 379999999999999999 889988865
No 182
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.67 E-value=2.7e-08 Score=67.99 Aligned_cols=30 Identities=43% Similarity=0.685 Sum_probs=28.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINM 724 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~ 724 (760)
+|.||||+||..|+.+++++||++||+++.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~ 30 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA 30 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 599999999999999999999999999987
No 183
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.67 E-value=2.2e-05 Score=76.41 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=153.9
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 046849 20 MEESAEE---LKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELL 96 (760)
Q Consensus 20 ~e~~l~~---l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l 96 (760)
+|.+|+. +......|++.++.|...+-.....+..|.+.|..++... +.. + +..+..|+++++-+......+
T Consensus 4 L~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~--~~~-a--~~~f~~~~~a~r~~~k~g~~l 78 (203)
T cd00011 4 LELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKD--PEL-A--GEEFGYNAEAQKLLCKNGETL 78 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcH-H--HHHHHHHHHHHHHHHHhHHHH
Confidence 4445544 4457888999999999999999888999999998887422 211 1 256999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCh------hhHHHHHHHHHHHHHHHHHHH
Q 046849 97 RSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRD------DIVAELEEDLQNSKSAFEKSR 170 (760)
Q Consensus 97 ~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~------~~~~e~~~~l~~~Rk~f~~as 170 (760)
...+... +..|..|+...|..-...=++|+.++.+|++++.+...++..-.| ...+.+-.+...+|..|.+-.
T Consensus 79 l~~l~~~-~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr 157 (203)
T cd00011 79 LGAVNFF-VSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLR 157 (203)
T ss_pred HHHHHHH-HHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665 556999999999999999999999999999999998888654333 335667778999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 171 FNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 171 ldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
.|.+.+|.-|..++--.+...|..|..+...||......+++
T Consensus 158 ~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~ 199 (203)
T cd00011 158 GDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQ 199 (203)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999998887788999999999999999887777654
No 184
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.64 E-value=3.5e-05 Score=75.66 Aligned_cols=191 Identities=14% Similarity=0.197 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHH-HHHHHH
Q 046849 18 FSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELA-TYKELL 96 (760)
Q Consensus 18 ~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~-~~~~~l 96 (760)
...|.....+++-.++|.|.++.|.+++.....++..|+++|.++-...-+... + +...+.....++ .+.+.+
T Consensus 15 e~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~~----~--~~~~~~~~d~~~~dl~~~l 88 (211)
T cd07611 15 EEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGRD----D--VKTIGEKCDLLWEDFHQKL 88 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc----h--HHHHHhhHHHHHHHHHHHH
Confidence 345556677888999999999999999999999999999999987632211100 0 111122222111 233333
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 97 RSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKK--NTRDDIVAELEEDLQNSKSAFEKSRFNLV 174 (760)
Q Consensus 97 ~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k--~k~~~~~~e~~~~l~~~Rk~f~~asldyv 174 (760)
+ ..++.|++.|+ ..+..+++.=++=+.-..+||++..++.++.- .+....+..++++|..++..|..--=.+.
T Consensus 89 v----~~vl~P~~~~~-s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk 163 (211)
T cd07611 89 V----DGALLTLDTYL-GQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQ 163 (211)
T ss_pred H----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33799999998 55777776666667777889999999987753 34566788899999999999988877888
Q ss_pred HHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 175 SALTNIEAKKKYE-FLESISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 175 ~~i~~l~~~k~~e-~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
..|..+-..+- . |+-.+=+++..|..|+.....+..++...|+.|
T Consensus 164 ~ELP~L~~~Ri-~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~l 209 (211)
T cd07611 164 EELPSLWSRRV-GFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTKL 209 (211)
T ss_pred HHHHHHHHhhh-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88887754322 3 444555888899999988777777776666654
No 185
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=98.62 E-value=3.2e-05 Score=75.94 Aligned_cols=192 Identities=15% Similarity=0.206 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 046849 18 FSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLR 97 (760)
Q Consensus 18 ~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~ 97 (760)
...|.....++.-.++|.|..+.|.+++.....++..|+++|.++-...-+.. .-+..+.+...+ ....+.
T Consensus 15 e~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~------~~~~~v~e~~d~---~~~~~~ 85 (211)
T cd07612 15 EQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGH------EDLGAIVEGEDL---LWNDYE 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcc------cHHHHHHhccHH---HHHHHH
Confidence 34455556777889999999999999999999999999999998763221111 112222233233 334455
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 98 SQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLK--KNTRDDIVAELEEDLQNSKSAFEKSRFNLVS 175 (760)
Q Consensus 98 ~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~--k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~ 175 (760)
..+...++.||.+|+ ..+..+++.=++=+.-.-+||++..++..+. ++++...+..++++|..++..|..--=++..
T Consensus 86 ~~~~~~vL~pi~~~~-s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ 164 (211)
T cd07612 86 AKLHDQALRTMESYM-AQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINRELRE 164 (211)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677999999998 4567777666666777788999999987774 3455667889999999999999998888888
Q ss_pred HHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046849 176 ALTNIEAKKKYEFLE-SISAIMDVHLRYFKLGFDLLSKIEPYVHQV 220 (760)
Q Consensus 176 ~i~~l~~~k~~e~l~-~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l 220 (760)
.|..|-..+- .|++ .+-+++..|..||.....++.++...|+.|
T Consensus 165 ELP~L~~~Ri-~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l 209 (211)
T cd07612 165 ELPILYDSRI-GCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKL 209 (211)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888864432 3444 455888999999998888887777766654
No 186
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=1.4e-08 Score=107.94 Aligned_cols=65 Identities=28% Similarity=0.445 Sum_probs=57.5
Q ss_pred cCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHh
Q 046849 682 QRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILL 757 (760)
Q Consensus 682 ~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL 757 (760)
..-.|+...| ..|.||||-|+..||.+||++||++|||||+ .|.+|+||||.|+..++ .-|.+.|
T Consensus 571 ~ev~DpSqpN--dEGITaLHNAiCaghyeIVkFLi~~ganVNa------~DSdGWTPLHCAASCNn---v~~ckqL 635 (752)
T KOG0515|consen 571 YEVTDPSQPN--DEGITALHNAICAGHYEIVKFLIEFGANVNA------ADSDGWTPLHCAASCNN---VPMCKQL 635 (752)
T ss_pred HhhcCCCCCC--ccchhHHhhhhhcchhHHHHHHHhcCCcccC------ccCCCCchhhhhhhcCc---hHHHHHH
Confidence 3344677777 8999999999999999999999999999998 99999999999999999 7766655
No 187
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=98.61 E-value=3.6e-05 Score=73.81 Aligned_cols=186 Identities=16% Similarity=0.223 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQV 100 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~ 100 (760)
-++++.++...+.+++.++.+...+-+....+..|.+.|..++.-...+. . ...+..|++..+.+...-+.|+..+
T Consensus 8 ie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~---l-~eeF~~~ae~hR~l~k~G~~ll~ai 83 (215)
T cd07659 8 LEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPA---A-SEAFTKFGEAHRSIEKFGIELLKTL 83 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChh---H-HHHHHHhHHHHHHHHHhHHHHHHHh
Confidence 35666677788999999999999999988889999999999874322111 1 2568999999999999888887776
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CC-----ChhhHHHHHHHH-------HHHHHH
Q 046849 101 EHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKK---NT-----RDDIVAELEEDL-------QNSKSA 165 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k---~k-----~~~~~~e~~~~l-------~~~Rk~ 165 (760)
... +..|..++...|..-+..-|+|+.+.-+||+...+...+.- .. ..-.+.....+. ..+|..
T Consensus 84 ~~~-~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~k 162 (215)
T cd07659 84 KPM-LSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARAR 162 (215)
T ss_pred HHH-HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHH
Confidence 665 55699999999999999999999999999999999877732 10 111111122222 688999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 166 FEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS 211 (760)
Q Consensus 166 f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~ 211 (760)
|.+-+-|...+|.-+..++--+++.+|..|+.+...||..+++.++
T Consensus 163 f~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 163 FAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888999999999999999998888875
No 188
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.60 E-value=3.1e-09 Score=82.45 Aligned_cols=55 Identities=25% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHH
Q 046849 633 IVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLA 703 (760)
Q Consensus 633 l~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~A 703 (760)
|..+..+ +| ..|..|.||||+|+..|+.+ ++..|++.|+|++.+| ..|+||||+|
T Consensus 2 L~~~~~~-~n--~~d~~G~T~LH~A~~~g~~~-----------~v~~Ll~~g~d~~~~d--~~G~Tpl~~A 56 (56)
T PF13857_consen 2 LEHGPAD-VN--AQDKYGNTPLHWAARYGHSE-----------VVRLLLQNGADPNAKD--KDGQTPLHYA 56 (56)
T ss_dssp ----T---TT-----TTS--HHHHHHHHT-HH-----------HHHHHHHCT--TT-----TTS--HHHH-
T ss_pred CccCcCC-Cc--CcCCCCCcHHHHHHHcCcHH-----------HHHHHHHCcCCCCCCc--CCCCCHHHhC
Confidence 4444333 44 47888999999999997543 4455689999999999 9999999997
No 189
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.59 E-value=1.9e-08 Score=111.91 Aligned_cols=97 Identities=24% Similarity=0.181 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcC
Q 046849 628 EVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCG 707 (760)
Q Consensus 628 ~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g 707 (760)
.+.-++.....+++|. .|..|+|+||+|+..+ ...++..||.+|+|++.+|. ..|+||||-|.+.|
T Consensus 32 qlk~F~~k~c~n~ani--kD~~GR~alH~~~S~~-----------k~~~l~wLlqhGidv~vqD~-ESG~taLHRaiyyG 97 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANI--KDRYGRTALHIAVSEN-----------KNSFLRWLLQHGIDVFVQDE-ESGYTALHRAIYYG 97 (1267)
T ss_pred HHHHHHHHhhhhhhhH--HHhhccceeeeeeccc-----------hhHHHHHHHhcCceeeeccc-cccchHhhHhhhhc
Confidence 4555555544443554 7789999999999885 34456677999999999983 57999999999999
Q ss_pred CHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHH
Q 046849 708 NLVMLELLIQFGADINMRARPSIKDGGGLSSLERAME 744 (760)
Q Consensus 708 ~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~ 744 (760)
+++|+-+||.+|+.+.+ +|+.|.+||+.-+.
T Consensus 98 ~idca~lLL~~g~SL~i------~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 98 NIDCASLLLSKGRSLRI------KDKEGLSPLQFLSR 128 (1267)
T ss_pred hHHHHHHHHhcCCceEE------ecccCCCHHHHHhh
Confidence 99999999999999887 99999999997766
No 190
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.58 E-value=7.6e-08 Score=95.37 Aligned_cols=65 Identities=32% Similarity=0.447 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhcC
Q 046849 686 DSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAES 760 (760)
Q Consensus 686 dvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~~ 760 (760)
++|..| ..|.|||..|++.|+.++|++||+.|||||.. .+..+.||||+|+..|+ .++-++|+++
T Consensus 37 ~vn~~D--~sGMs~LahAaykGnl~~v~lll~~gaDvN~~-----qhg~~YTpLmFAALSGn---~dvcrlllda 101 (396)
T KOG1710|consen 37 QVNQRD--PSGMSVLAHAAYKGNLTLVELLLELGADVNDK-----QHGTLYTPLMFAALSGN---QDVCRLLLDA 101 (396)
T ss_pred hhhccC--CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc-----cccccccHHHHHHHcCC---chHHHHHHhc
Confidence 477777 89999999999999999999999999999973 67889999999999999 9999999763
No 191
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.56 E-value=5.4e-07 Score=79.52 Aligned_cols=105 Identities=14% Similarity=0.224 Sum_probs=70.9
Q ss_pred ceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCC--CCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcc
Q 046849 293 QTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGI--KSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSL 370 (760)
Q Consensus 293 ~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (760)
..+++|-|.|-+... +.++.|+|+|- +++|.|-+.... ..+|. .+ ..-.
T Consensus 3 elI~EG~L~ki~~~~-~~~q~R~~FLF-d~~Li~CK~~~~~~~~~g~---------~~------------------~~y~ 53 (112)
T cd01261 3 EFIMEGTLTRVGPSK-KAKHERHVFLF-DGLMVLCKSNHGQPRLPGA---------SS------------------AEYR 53 (112)
T ss_pred cccccCcEEEEeccc-CCcceEEEEEe-cCeEEEEEeccCccccccc---------cc------------------ceEE
Confidence 457899999886433 47899999998 555555443222 11110 00 0011
Q ss_pred ccccccccCceeccCCCCCCCCceEEEEec-CceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 371 NCRTVDLRTSAIKMDGEDTDLRLCFRIISP-VKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 371 ~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~-~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
..+.+++....|...++..+-++.|.|.+. ++++.|+|.|++|..+||++|..++.
T Consensus 54 ~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 54 LKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 245667777666654444446899999985 68899999999999999999998774
No 192
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.55 E-value=3.9e-08 Score=112.18 Aligned_cols=120 Identities=18% Similarity=0.099 Sum_probs=67.2
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
|-.|...|.++.|..+|.. |.. +|.......|-.||++|.++||.. .+..+++.|.|+|..- ..+.
T Consensus 861 lsla~Sggy~~iI~~llS~-Gse-InSrtgSklgisPLmlatmngh~~-----------at~~ll~~gsdiNaqI-eTNr 926 (2131)
T KOG4369|consen 861 LSLARSGGYTKIIHALLSS-GSE-INSRTGSKLGISPLMLATMNGHQA-----------ATLSLLQPGSDINAQI-ETNR 926 (2131)
T ss_pred hhhhcCcchHHHHHHHhhc-ccc-cccccccccCcchhhhhhhccccH-----------HHHHHhcccchhcccc-cccc
Confidence 3334334443334333333 233 555555555555555555555422 2233455555555433 1345
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+|+|-+|+..|..++|.+||.+.|++.. +-+.|.|||+-++..|. +++=++|++
T Consensus 927 nTaltla~fqgr~evv~lLLa~~anveh------Raktgltplme~AsgGy---vdvg~~li~ 980 (2131)
T KOG4369|consen 927 NTALTLALFQGRPEVVFLLLAAQANVEH------RAKTGLTPLMEMASGGY---VDVGNLLIA 980 (2131)
T ss_pred ccceeeccccCcchHHHHHHHHhhhhhh------hcccCCcccchhhcCCc---cccchhhhh
Confidence 5555555555555555555555555554 88899999999998888 677666654
No 193
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.53 E-value=5.2e-08 Score=109.92 Aligned_cols=101 Identities=26% Similarity=0.441 Sum_probs=72.9
Q ss_pred cCCCCcceeEEEEEEeeCCCCCCCceeeEEEEecC-ceEEEEecCCC-CCCCCCcccCCCCCCCCCccccccccccCCCC
Q 046849 287 SATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQ-GTLYYYRNKGI-KSMGSHHHYAGSADHNGGVFSRFRSRHYRSSS 364 (760)
Q Consensus 287 ~~~~~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~-~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (760)
.++.....+-+|||+||+... |.||.|||||+.+ ..|+||....+ .+.|+
T Consensus 1627 ~s~~teNr~~eG~LyKrGA~l-K~Wk~RwFVLd~~khqlrYYd~~edt~pkG~--------------------------- 1678 (1732)
T KOG1090|consen 1627 MSPPTENRIPEGYLYKRGAKL-KLWKPRWFVLDPDKHQLRYYDDFEDTKPKGC--------------------------- 1678 (1732)
T ss_pred cCCcccccCcccchhhcchhh-cccccceeEecCCccceeeecccccccccch---------------------------
Confidence 344445556699999998655 5999999999864 57888876543 44443
Q ss_pred CCCCccccccccccCc--eeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 365 FNEDSLNCRTVDLRTS--AIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 365 ~~~~~~~~~~i~l~~~--~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
|+|... ..-..+...|++--|++.+..|+|.|.|++-....+|++.|+.++
T Consensus 1679 ----------IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1679 ----------IDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ----------hhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 333210 000123445667779999999999999999999999999999875
No 194
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.51 E-value=7.3e-07 Score=77.48 Aligned_cols=92 Identities=24% Similarity=0.378 Sum_probs=63.4
Q ss_pred CcceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcc
Q 046849 291 EVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSL 370 (760)
Q Consensus 291 ~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (760)
...++++|++.|+.|-+ +++|||+|.+...|+|+.......
T Consensus 10 ge~Il~~g~v~K~kgl~---~kkR~liLTd~PrL~Yvdp~~~~~------------------------------------ 50 (104)
T PF14593_consen 10 GELILKQGYVKKRKGLF---AKKRQLILTDGPRLFYVDPKKMVL------------------------------------ 50 (104)
T ss_dssp T--EEEEEEEEEEETTE---EEEEEEEEETTTEEEEEETTTTEE------------------------------------
T ss_pred CCeEEEEEEEEEeeceE---EEEEEEEEccCCEEEEEECCCCeE------------------------------------
Confidence 57899999999996433 899999999666999887654422
Q ss_pred ccccccccCc-eeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHh
Q 046849 371 NCRTVDLRTS-AIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASL 428 (760)
Q Consensus 371 ~~~~i~l~~~-~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~ 428 (760)
.+.|.+..+ .+.. . ..-.|.|.||+|+|+|.. .+.+...|+++|+..+...
T Consensus 51 -KGeI~~~~~l~v~~--k---~~~~F~I~tp~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 51 -KGEIPWSKELSVEV--K---SFKTFFIHTPKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp -EEEE--STT-EEEE--C---SSSEEEEEETTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred -CcEEecCCceEEEE--c---cCCEEEEECCCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 345555533 2222 1 123799999999999998 5566888999999887543
No 195
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.45 E-value=2e-06 Score=73.95 Aligned_cols=105 Identities=15% Similarity=0.353 Sum_probs=64.5
Q ss_pred EEEEEEeeCC-CC--CCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 296 KQGYLLKRSS-NL--RGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 296 k~G~L~K~~~-~~--~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
.||||.-... +. +++|+|+|+||. +..|++|..+.++...+ |. -+| +-. ...
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~-~~Kl~lYd~e~~~~~~~------p~----~vl-------------dl~-~~f 56 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVS-SRKILFYNDEQDKENST------PS----MIL-------------DID-KLF 56 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEe-CCEEEEEecCccccCCC------cE----EEE-------------Ecc-cee
Confidence 4899985433 22 468999999998 66777777655422100 00 000 000 000
Q ss_pred ccccccCceeccCCCCCCCCceEEEEecC--ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIISPV--KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
..-.+..+.+.. ++..|-++-|+|.... ++.+|-|+|+.|.+.|+.+|..-|.
T Consensus 57 hv~~V~asDVi~-a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 57 HVRPVTQGDVYR-ADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred eeecccHHHeee-cCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 000111112222 4556788999999876 8899999999999999999987663
No 196
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.43 E-value=1.5e-07 Score=107.67 Aligned_cols=124 Identities=18% Similarity=0.089 Sum_probs=97.0
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
|..|..+|+...++.+|..| .| +|.... .+.+|+|-+|+..|.-+++ .+||...+++..+- ..|
T Consensus 896 Lmlatmngh~~at~~ll~~g-sd-iNaqIe-TNrnTaltla~fqgr~evv-----------~lLLa~~anvehRa--ktg 959 (2131)
T KOG4369|consen 896 LMLATMNGHQAATLSLLQPG-SD-INAQIE-TNRNTALTLALFQGRPEVV-----------FLLLAAQANVEHRA--KTG 959 (2131)
T ss_pred hhhhhhccccHHHHHHhccc-ch-hccccc-cccccceeeccccCcchHH-----------HHHHHHhhhhhhhc--ccC
Confidence 88889999988888888875 56 776433 3578999999999865444 34566666666666 778
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCcccc-----------------------------CCCCCCCCCCCcHHHHHHHcCC
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMR-----------------------------ARPSIKDGGGLSSLERAMEMGA 747 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~-----------------------------Ad~~~~d~~G~TpL~~A~~~g~ 747 (760)
-|||+-+|..|.+++-.+||..|||+|+. |-+.++|+.|.|||.+|+..|+
T Consensus 960 ltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~ 1039 (2131)
T KOG4369|consen 960 LTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGA 1039 (2131)
T ss_pred CcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCc
Confidence 88888888888888888888888888876 6778899999999999999999
Q ss_pred CChHHHHHHhhc
Q 046849 748 ITDEELFILLAE 759 (760)
Q Consensus 748 ~~~~eiv~lL~~ 759 (760)
...+.+|++
T Consensus 1040 ---lss~~il~~ 1048 (2131)
T KOG4369|consen 1040 ---LSSCPILVS 1048 (2131)
T ss_pred ---cccchHHhh
Confidence 555555554
No 197
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.42 E-value=2.2e-06 Score=74.92 Aligned_cols=105 Identities=16% Similarity=0.294 Sum_probs=63.0
Q ss_pred eEEEEEEeeC-CCCCCCceeeEEEEecCceEEEEecCCCCCC---CCCcccCCCCCCCCCccccccccccCCCCCCCCcc
Q 046849 295 IKQGYLLKRS-SNLRGDWKRRFFVLNSQGTLYYYRNKGIKSM---GSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSL 370 (760)
Q Consensus 295 ~k~G~L~K~~-~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (760)
..||||.-.. ++.+++|+|+|+||. +..|++|..+.++.. ....+. -+..++.++
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~-~~Kl~lYd~e~~k~~~p~~~~~~v---LdlrD~~fs----------------- 61 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVC-DFKLFLYDIAEDRASQPSVVISQV---LDMRDPEFS----------------- 61 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEe-CCEEEEEeCCccccCCccCceeEE---EEcCCCCEE-----------------
Confidence 3589998443 345569999999998 677778876554211 000000 000011110
Q ss_pred ccccccccCceeccCCCCCCCCceEEEEec-------CceeEEEcCCHHHHHHHHHHHHHH
Q 046849 371 NCRTVDLRTSAIKMDGEDTDLRLCFRIISP-------VKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 371 ~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~-------~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.-.+..+.+. .++..|.++-|+|.+. ..+.+|-|+|+.|+..|+.+|+.-
T Consensus 62 ---V~~VtasDvi-~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 62 ---VSSVLESDVI-HASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred ---EEEecHHHcc-ccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 0011111122 2455678899999873 367899999999999999999753
No 198
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.40 E-value=0.00022 Score=72.03 Aligned_cols=193 Identities=16% Similarity=0.225 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 20 MEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQ 99 (760)
Q Consensus 20 ~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~ 99 (760)
+...++.++..++++.+.+..++.....+......|..+|..++....... -.+ +.++..|+..+..+......+...
T Consensus 9 ~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 86 (218)
T cd07596 9 AKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVG-GEL-GEALSKLGKAAEELSSLSEAQANQ 86 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555567777777765332210 012 368999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhcCC--Chh-------hHHHHHHHHHHHH
Q 046849 100 VEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFV-------SLKKNT--RDD-------IVAELEEDLQNSK 163 (760)
Q Consensus 100 ~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~-------s~~k~k--~~~-------~~~e~~~~l~~~R 163 (760)
....+..||..++ ..+..+++.=+.-+.....|+.+..... .+..+. ++. .+.+++.++..++
T Consensus 87 ~~~~~~e~L~~y~-~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~ 165 (218)
T cd07596 87 ELVKLLEPLKEYL-RYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEAR 165 (218)
T ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 5566666555554455555544433332 222211 122 2456666777888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 164 SAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 164 k~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
..|...+-.....+..++..+..+|-..+..|...+..|+++..+.|..+.|
T Consensus 166 ~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~ 217 (218)
T cd07596 166 KRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLP 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8888888888899999988888899999999999999999999999887643
No 199
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.39 E-value=0.00015 Score=72.09 Aligned_cols=179 Identities=15% Similarity=0.245 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVE 101 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~ 101 (760)
+.++.|+..|..+-|...+++....++......|..++..++....+ + +..|..|+.....+......+.....
T Consensus 21 eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~-----L-~~~L~~~~~~~~~~~~~~~~l~~~~~ 94 (200)
T cd07624 21 EYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETE-----L-APLLEGVSSAVERCTAALEVLLSDHE 94 (200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-----H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555556677777777744322 2 36899999999999998889888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 102 HVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIE 181 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~ 181 (760)
..+..||..++ ..+..+|..=+.=+..+..|+.+.+-.. .++ .+...++..++..|..+.-++...+..++
T Consensus 95 ~~f~e~Lkey~-~y~~svk~~l~~R~~~q~~~e~~~e~L~-~k~-------~~l~~ev~~a~~~~e~~~~~~~~E~~rF~ 165 (200)
T cd07624 95 FVFLPPLREYL-LYSDAVKDVLKRRDQFQIEYELSVEELN-KKR-------LELLKEVEKLQDKLECANADLKADLERWK 165 (200)
T ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999987 4566666655555668888877655422 222 11666788899999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 182 AKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 182 ~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
..|..+|-..+.+|...|..|+.+..+.|..+-|
T Consensus 166 ~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p 199 (200)
T cd07624 166 QNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLP 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999998877654
No 200
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=98.38 E-value=0.00019 Score=73.70 Aligned_cols=190 Identities=19% Similarity=0.344 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQV 100 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~ 100 (760)
.+.++.++..|+++.+.+..++....++..+...|..++..++....+.. + +..|..|+.....+...........
T Consensus 30 ~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~---l-~~~l~~l~~~~~~~~~~~~~~a~~~ 105 (236)
T PF09325_consen 30 KDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKS---L-SEALSQLAEAFEKISELLEEQANQE 105 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch---h-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556667777777777777777766766667778888888875433311 1 3679999999999999988888888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhcC--CChhh-------HHHHHHHHHHHHH
Q 046849 101 EHVLINRLTEFLTVDLHDAKESRRR-------FDKSIHAYDQAREKFVSLKKN--TRDDI-------VAELEEDLQNSKS 164 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~rk~-------fek~~~~Yd~al~ky~s~~k~--k~~~~-------~~e~~~~l~~~Rk 164 (760)
...+..||..++ ..+..+|+.=++ |+.+...++....++..+..+ .+++. +.+++..+..+++
T Consensus 106 ~~~l~~~L~ey~-~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~ 184 (236)
T PF09325_consen 106 EETLGEPLREYL-RYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKD 184 (236)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999886 445555544333 333344444443333333322 12222 3445555667788
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 165 AFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 165 ~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
.|...+-..-..+..++..+..+|-..+..|+..+..|.++..+.|+.+-|
T Consensus 185 ~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 185 EFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 888888888889999998888899999999999999999999999987644
No 201
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.36 E-value=1.2e-06 Score=75.48 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=27.9
Q ss_pred CceEEEEecC-------ceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 392 RLCFRIISPV-------KTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 392 ~~~F~i~~~~-------~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
.|||-|..+. -.-.|+||+++.+..||.+|+-+.
T Consensus 68 d~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 68 DYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 4888887654 126999999999999999998664
No 202
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.36 E-value=0.00028 Score=69.13 Aligned_cols=177 Identities=17% Similarity=0.277 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 046849 19 SMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRS 98 (760)
Q Consensus 19 ~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~ 98 (760)
.+.+.++.|+..|.++-|...+++....++......|+..+..++....+. + +..|..|+..+..+......+..
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~----L-~~~l~~~~~~~~~~s~~~~~l~~ 82 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGE----I-TEPFKIFSESLSQFSTSLRVLNK 82 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh----h-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666665666666667788887777433331 2 36799999999999988889988
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 99 QVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALT 178 (760)
Q Consensus 99 ~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~ 178 (760)
.+...+..||..+. ..+..+|..-+.=+..+..|+.+. .|+ ...++..++..|....-+....+.
T Consensus 83 ~~~~~f~~~Lkd~~-~y~~s~k~~lk~R~~kq~d~e~l~-e~l-------------l~~~ve~a~~~~e~f~~~~~~E~~ 147 (185)
T cd07628 83 YTDENYLTSLKDLL-HYILSLKNLIKLRDQKQLDYEELS-DYL-------------LTDEVENAKETSDAFNKEVLKEYP 147 (185)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHH-HHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999997 457777777777778888887654 333 344667888899988889999999
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 179 NIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 179 ~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
.++..|..++-+.+.+|...|..||..+.+.|..+.|
T Consensus 148 rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 148 NFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999998887643
No 203
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=98.34 E-value=5.1e-05 Score=78.15 Aligned_cols=137 Identities=18% Similarity=0.307 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHH
Q 046849 76 GPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAEL 155 (760)
Q Consensus 76 ~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~ 155 (760)
+.+|.+|+.+..+|...|..+-..+...|..||+..+..++..+-.+||+.+..+-.||.+..++.+. .+|+...++
T Consensus 151 ~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~---~~pekee~~ 227 (289)
T PF10455_consen 151 SKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKANKARKKVENSRLQFDAARANLKNK---AKPEKEEQL 227 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCcccCHHH
Confidence 36899999999999999999988899999999999999999999999999999999999998886553 234433456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 046849 156 EEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYV 217 (760)
Q Consensus 156 ~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~ 217 (760)
..+|..+--.|-.+.-+-+..|..|-.. -+++..|-.|+.+|..||+.+.+.+.++-+.+
T Consensus 228 r~~lE~aEDeFv~aTeeAv~~Mk~vl~~--~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 228 RVELEQAEDEFVSATEEAVEVMKEVLDN--SEPLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677888889999999999999999876 45889999999999999999999988765443
No 204
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=98.30 E-value=0.00027 Score=70.58 Aligned_cols=187 Identities=18% Similarity=0.273 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC-CCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 27 LKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG-HDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLI 105 (760)
Q Consensus 27 l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~-~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~ 105 (760)
+.--+++|+..+++|..++..+..+...|.++|..++.. ....-+-.+ |.+|.+++...+.+++..+.+...+-..++
T Consensus 18 ~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~l-G~~L~~i~~~~r~ie~~l~~~~~~~~~~li 96 (223)
T cd07605 18 FNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQEL-GEALKQIVDTHKSIEASLEQVAKAFHGELI 96 (223)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444788999999999999999999999999999887631 111122234 478999999999999998888888889999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHhhhhcC-------CChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 106 NRLTEFLTVDLHDAKESRRRFDKSIH----AYDQAREKFVSLKKN-------TRDDIVAELEEDLQNSKSAFEKSRFNLV 174 (760)
Q Consensus 106 ~pL~~f~~~~l~~~ke~rk~fek~~~----~Yd~al~ky~s~~k~-------k~~~~~~e~~~~l~~~Rk~f~~asldyv 174 (760)
.||+.=++.+.+.+....|+|.+..+ .++.+.+....+.|+ +.++.+.++-+++-.....+++.--+-+
T Consensus 97 ~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~l 176 (223)
T cd07605 97 LPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGL 176 (223)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777777766666 444444444444443 2344445555555555555544433333
Q ss_pred HHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 175 SALTNIEAKKK-YEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 175 ~~i~~l~~~k~-~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
...- +++|++ --||+.+..++.....||..+..++.+.-|
T Consensus 177 r~al-~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~ 217 (223)
T cd07605 177 RDAL-LEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLP 217 (223)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3222 233333 358888899999999999998888865433
No 205
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.28 E-value=2.7e-06 Score=73.63 Aligned_cols=96 Identities=14% Similarity=0.293 Sum_probs=57.8
Q ss_pred eEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 295 IKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGI-KSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 295 ~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
+|||||.--...- +.|||+|++|+ ...+.+|.++.. +....|+. .+
T Consensus 1 lkEGWmVHyT~~d-~~rKRhYWrLD-sK~Itlf~~e~~skyyKeIPL-------------------------------sE 47 (117)
T cd01239 1 LKEGWMVHYTSSD-NRRKKHYWRLD-SKAITLYQEESGSRYYKEIPL-------------------------------AE 47 (117)
T ss_pred CccceEEEEecCc-cceeeeEEEec-CCeEEEEEcCCCCeeeEEeeh-------------------------------HH
Confidence 4799998665433 48999999999 455556655433 22211111 11
Q ss_pred cccccCceeccCCCCCCCCceEEEEecCceeEEEcC--------------------CHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAE--------------------TEADRMDWTSKITGV 424 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~--------------------s~~e~~~Wi~ai~~~ 424 (760)
.+.+..+.-.. .......+||+|.|...+|+.+.+ ..+..+.|-.||++|
T Consensus 48 Il~V~~~~~~~-~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 48 ILSVSSNNGDS-VLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred heEEeccCCCc-CCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 11222111111 122456799999999999999775 334568898888764
No 206
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.27 E-value=8.9e-07 Score=95.24 Aligned_cols=64 Identities=27% Similarity=0.412 Sum_probs=56.5
Q ss_pred CcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHh
Q 046849 683 RIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILL 757 (760)
Q Consensus 683 ~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL 757 (760)
.+..|+..| ..|.||||+|+..|+.+++++|+.+||++-. +|+.|++|||-|+..|+ .+++..+
T Consensus 44 ~~~~id~~D--~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~------kN~~gWs~L~EAv~~g~---~q~i~~v 107 (560)
T KOG0522|consen 44 VSLVIDRRD--PPGRTPLHLAVRLGHVEAARILLSAGADVSI------KNNEGWSPLHEAVSTGN---EQIITEV 107 (560)
T ss_pred hhceecccc--CCCCccHHHHHHhcCHHHHHHHHhcCCCccc------cccccccHHHHHHHcCC---HHHHHHH
Confidence 455677777 8899999999999999999999999999877 99999999999999999 6665544
No 207
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=98.25 E-value=0.00072 Score=68.49 Aligned_cols=189 Identities=13% Similarity=0.198 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVE 101 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~ 101 (760)
..|+.++..|+++.+.+..++..-.++..+...|+.++..++...... .+ ..+|..|++....+.........+..
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~---~L-s~al~~la~~~~ki~~~~~~qa~~d~ 94 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHT---SL-SRALSQLAEVEEKIEQLHGEQADTDF 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch---hH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777666666666777888888888543222 22 36899999998888888888777777
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhcCCChhh-------HHHHHHHHHHHHHHHH
Q 046849 102 HVLINRLTEFLTVDLHDAKES-------RRRFDKSIHAYDQAREKFVSLKKNTRDDI-------VAELEEDLQNSKSAFE 167 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~ke~-------rk~fek~~~~Yd~al~ky~s~~k~k~~~~-------~~e~~~~l~~~Rk~f~ 167 (760)
..+..||..++ ..|..+++. ...+..+...+....++...+....+++. +.+++..+..+++.|.
T Consensus 95 ~~l~e~L~eY~-r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe 173 (224)
T cd07623 95 YILAELLKDYI-GLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFE 173 (224)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876 334444322 22222333333333333333322222333 3455666777889999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
..+--.-..|..++..+-.+|-..+..|+..+..|.++..++|+.+-|
T Consensus 174 ~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~p 221 (224)
T cd07623 174 EISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLP 221 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 988888899999998888899999999999999999999999887765
No 208
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=98.24 E-value=0.00047 Score=69.48 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
.|+.++..|+++.+.+..++..-.++..+...|+.++..++.....+ .+ ..+|.+|+.....+.........+...
T Consensus 12 ~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~---~l-~~~l~~~a~~~~~~~~~~~~~a~~e~~ 87 (216)
T cd07627 12 YLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSK---SL-SDLLAALAEVQKRIKESLERQALQDVL 87 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---Hh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444455555566777777776432221 11 267999999999988888887777777
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhcC-C-Chhh-------HHHHHHHHHHHHHHH
Q 046849 103 VLINRLTEFLTVDLHDAKESRRRFDKSIHAY-------DQAREKFVSLKKN-T-RDDI-------VAELEEDLQNSKSAF 166 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Y-------d~al~ky~s~~k~-k-~~~~-------~~e~~~~l~~~Rk~f 166 (760)
.+..||..++ ..+..+|..=.+=.+....| +...++...+... + +++. +.+++.....+++.|
T Consensus 88 ~l~~~L~ey~-r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~ 166 (216)
T cd07627 88 TLGVTLDEYI-RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEF 166 (216)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887 33555553333333333333 3333222222111 1 1222 345666677889999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 167 EKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKI 213 (760)
Q Consensus 167 ~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~ 213 (760)
...+-..-..+..++..+-.+|-..|..|+.++..++++..++|+.+
T Consensus 167 e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 167 EEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999998887754
No 209
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.21 E-value=0.001 Score=67.32 Aligned_cols=189 Identities=12% Similarity=0.165 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVE 101 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~ 101 (760)
..|+.++..|+++.+.+..++..-.++..+...|+.++..++...+.. .+ ..+|..|++....+.........+..
T Consensus 29 ~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~---~l-s~~l~~laev~~ki~~~~~~qa~~d~ 104 (234)
T cd07664 29 QQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHT---AL-SRALSQLAEVEEKIDQLHQDQAFADF 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc---hH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 346677777888888877777766777777778888888888643322 12 36788899888888777777777777
Q ss_pred HHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHH----HHhhhhcCCChhhHH-------HHHHHHHHHHHHHH
Q 046849 102 HVLINRLTEFLTVDLHDAK---ESRRRFDKSIHAYDQARE----KFVSLKKNTRDDIVA-------ELEEDLQNSKSAFE 167 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~k---e~rk~fek~~~~Yd~al~----ky~s~~k~k~~~~~~-------e~~~~l~~~Rk~f~ 167 (760)
..+..||..++. .|..+| ..|.+-...+..-.+.+. +...+....+++.+. +.+.....+++.|.
T Consensus 105 ~~l~e~L~eYiR-~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe 183 (234)
T cd07664 105 YLFSELLGDYIR-LIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFE 183 (234)
T ss_pred HHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888763 344443 333322222222222222 212221112234443 44445556778888
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
..+-..=..|..++..+--+|-..+..|+.++..+-++..++|..+-|
T Consensus 184 ~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p 231 (234)
T cd07664 184 QISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP 231 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 877777788888887777799999999999999988888888877655
No 210
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=98.20 E-value=0.00029 Score=68.96 Aligned_cols=193 Identities=12% Similarity=0.239 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhh------------hchHHHHHHHHHhhCCCCCCCccccchhH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEAL-----GVAC------------SGDSAFADALEAFGGGHDDPVSVSIGGPV 78 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~-----~~~~------------~~~~~~~~~l~~~~~~~~d~~~~~~~~~~ 78 (760)
.+..+-...+.++.|.+++++...-+.+-- +++. +.-+.+++.+.+-+..+.....| |.+
T Consensus 38 HfENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efGptTpY---G~a 114 (375)
T KOG3725|consen 38 HFENLLQRADKTKDWTEKILSQTEVLLQPNPTARMEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFGPTTPY---GSA 114 (375)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhheecCCCcchhHHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcCCCCcc---hHH
Confidence 344444667788899999998876543210 1110 01123333333333222222222 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------CCC---
Q 046849 79 ISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKK-------NTR--- 148 (760)
Q Consensus 79 l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k-------~k~--- 148 (760)
|-+.++.-+.+...-..++......+..||.+|+..|.+-+...||-....+-+.|+.-+|....+. +.+
T Consensus 115 LiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s~ 194 (375)
T KOG3725|consen 115 LIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACKSRLKKAKAAELQTVRNSKTSG 194 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHHHHHHHhhhhhhhccccccccC
Confidence 9999999999988877888888888999999999999999999999999999999988777543321 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 149 DDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 149 ~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
...+..++.+|.-+...|...+-=--..+.-++.-.. --|..+.+|+.+|.+||-|+|.++-+
T Consensus 195 ~~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~-nhLrCL~dFVeaQmtyYAQcyq~MlD 257 (375)
T KOG3725|consen 195 GFTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHN-NHLRCLRDFVEAQMTYYAQCYQLMLD 257 (375)
T ss_pred cchHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123457777888888777665433333344443322 46788999999999999999988654
No 211
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.20 E-value=1.5e-06 Score=91.75 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=65.0
Q ss_pred chhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCC
Q 046849 614 TTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNC 693 (760)
Q Consensus 614 ~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~ 693 (760)
+.+++.|++.||+..+.+++..| .| ++ .+|
T Consensus 507 ~i~~~~aa~~GD~~alrRf~l~g-~D-~~----------------------------------------------~~D-- 536 (622)
T KOG0506|consen 507 VINVMYAAKNGDLSALRRFALQG-MD-LE----------------------------------------------TKD-- 536 (622)
T ss_pred hhhhhhhhhcCCHHHHHHHHHhc-cc-cc----------------------------------------------ccc--
Confidence 34477788888888888887775 33 22 233
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQF-GADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~-GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.+.+|+||.||.-|++++|++||.. +.+++. +|..|+|||+-|...+| .+++++|.+
T Consensus 537 yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~------kDRw~rtPlDdA~~F~h---~~v~k~L~~ 594 (622)
T KOG0506|consen 537 YDDRTALHVAAAEGHVEVVKFLLNACKVDPDP------KDRWGRTPLDDAKHFKH---KEVVKLLEE 594 (622)
T ss_pred cccchhheeecccCceeHHHHHHHHHcCCCCh------hhccCCCcchHhHhcCc---HHHHHHHHH
Confidence 5678888888888888888888875 555544 88888888888888888 788887764
No 212
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=98.20 E-value=0.00064 Score=67.25 Aligned_cols=178 Identities=11% Similarity=0.209 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHH-HHHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELAT-YKEL 95 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~-~~~~ 95 (760)
.+..|.....++..++++.|.++.|.+++......+..+++.+.++-....... ......|...+.++.+ ....
T Consensus 7 fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~~-----~~~~~~~~~~~~~~~~~~~~e 81 (195)
T cd07589 7 FDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPRL-----ESKWERFRRVVRGISSKALPE 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 356677778899999999999999999998887777777888877653221111 1234567666766666 3566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 96 LRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVS 175 (760)
Q Consensus 96 l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~ 175 (760)
+...+...++.|+..++.- +.+++..=++=+...-+||....+..+ +..++.++..++..|...--.+..
T Consensus 82 ~~~~i~~~V~~Pl~~~~~~-~~~~~k~I~KR~~KllDYdr~~~~~~k---------~~k~e~~l~~a~~~y~~lN~~L~~ 151 (195)
T cd07589 82 FKSRVRKLVIEPLSSLLKL-FSGPQKLIQKRYDKLLDYERYKEKKER---------GGKVDEELEEAANQYEALNAQLKE 151 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHhhhhccHHHHHHHHHh---------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999854 555554444444455669887766543 223667888999999998888888
Q ss_pred HHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 046849 176 ALTNIEAKKKYEFLES-ISAIMDVHLRYFKLGFDLL 210 (760)
Q Consensus 176 ~i~~l~~~k~~e~l~~-l~~~~~a~~~ff~~g~~~~ 210 (760)
.|..+-.... .++.+ +.+|+..|.+||...++.+
T Consensus 152 ELP~l~~~~~-~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 152 ELPKFNQLTA-QLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876654 45554 4588999999998776653
No 213
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00056 Score=73.56 Aligned_cols=190 Identities=16% Similarity=0.272 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
....++.--++|.|..+.|..++..+..++..|++++.++-.. +... ...+......... +...+...+..
T Consensus 38 ~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p--~~~g----~~~l~~v~~~~d~---l~~d~~~~l~d 108 (460)
T KOG3771|consen 38 NFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEP--DWPG----RDYLQAVADNDDL---LWKDLDQKLVD 108 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccc----HHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3344555677888888888888888888889999999886532 1111 1223333332222 34555667788
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 103 VLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR--DDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~--~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
.++.||+.|+.. +..++.+-.+-.....+||++..+|.++.++++ ...+.-++++|..+++.|..---++...|..|
T Consensus 109 ~vl~pl~~~~~~-fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L 187 (460)
T KOG3771|consen 109 QVLLPLDTYLGQ-FPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPAL 187 (460)
T ss_pred hhhhhHHHhhhh-chhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999743 444444444444455679999877777665443 33345588899999999999888888888877
Q ss_pred h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046849 181 E-AKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQVLTY 223 (760)
Q Consensus 181 ~-~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l~~~ 223 (760)
= .|..| |+-.+-+++..+..|+..+..+...|...+..|..+
T Consensus 188 ~~sRv~f-~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 188 YSSRVGF-FVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHhhhhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 34443 556667888999999998866666655555555443
No 214
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.11 E-value=2e-06 Score=92.25 Aligned_cols=116 Identities=20% Similarity=0.172 Sum_probs=94.8
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCC--CCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKD--SNDPGNCL 694 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gad--vn~~~~~~ 694 (760)
++.|+..+|+..+.+.-..||. ....+....+.||+|+..|+- ++++++|+||-. .+..+ .
T Consensus 870 il~av~~~D~~klqE~h~~gg~----ll~~~~~~~sllh~a~~tg~~-----------eivkyildh~p~elld~~d--e 932 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGS----LLIQGPDHCSLLHYAAKTGNG-----------EIVKYILDHGPSELLDMAD--E 932 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCc----eEeeCcchhhHHHHHHhcCCh-----------HHHHHHHhcCCHHHHHHHh--h
Confidence 8999999999888888777754 223455678899999999754 455566676653 34445 7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
.|.|+||.||..++..++++|+..||.+.. .|..|+||-.-|...|. .++..+|.
T Consensus 933 ~get~lhkaa~~~~r~vc~~lvdagasl~k------td~kg~tp~eraqqa~d---~dlaayle 987 (1004)
T KOG0782|consen 933 TGETALHKAACQRNRAVCQLLVDAGASLRK------TDSKGKTPQERAQQAGD---PDLAAYLE 987 (1004)
T ss_pred hhhHHHHHHHHhcchHHHHHHHhcchhhee------cccCCCChHHHHHhcCC---chHHHHHh
Confidence 899999999999999999999999999988 99999999999999999 77777774
No 215
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=98.11 E-value=0.0021 Score=61.45 Aligned_cols=189 Identities=14% Similarity=0.228 Sum_probs=137.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHH
Q 046849 19 SMEESAEELKD---RCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKEL 95 (760)
Q Consensus 19 ~~e~~l~~l~~---~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~ 95 (760)
++|.+|+.++. ....|.+.++.|...+-.+...+..+...|.+.+...-.. .+..+...++++..-...+..
T Consensus 3 ELdakielfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~-----ag~~m~~t~KaL~~sg~qrl~ 77 (204)
T cd07661 3 ELDAKLELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTT-----AGKMMAATGKALSFSSQQRLA 77 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh-----hccHHHHHHHHHHHhHHHHHH
Confidence 45666766654 6778888888888888888888888888888776322111 124555566655543333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CChhhHHHHHHHHHHHHHHHHHH
Q 046849 96 LRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKN------TRDDIVAELEEDLQNSKSAFEKS 169 (760)
Q Consensus 96 l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~------k~~~~~~e~~~~l~~~Rk~f~~a 169 (760)
....+ ..+...+..|+...|..--..-++||.++.+||+++.-.-..+.. +..+..+.+..++...|..|..-
T Consensus 78 ~r~pl-~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkL 156 (204)
T cd07661 78 LRVPL-LRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKL 156 (204)
T ss_pred HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 445666888888888888899999999999999999887555543 33455677888999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 170 RFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKI 213 (760)
Q Consensus 170 sldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~ 213 (760)
..|.+.++..+...+--.+=..|+.|-.+...||.+....+..+
T Consensus 157 k~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i 200 (204)
T cd07661 157 KMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATI 200 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887765666677888888888888766665543
No 216
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=98.08 E-value=0.0042 Score=60.99 Aligned_cols=194 Identities=13% Similarity=0.284 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHH
Q 046849 13 FQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVA-------CSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISA 85 (760)
Q Consensus 13 FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~ 85 (760)
||..++.-+.++..++..+...-|+--.++..+..+ -.-...|+..+..|.+...-+. ...|..|++.
T Consensus 2 ~~~~~~~rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l-----~~~L~~fae~ 76 (219)
T PF06730_consen 2 FRRELRSRDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNL-----KLGLKNFAEC 76 (219)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccH-----hhHHHHHHHH
Confidence 566677777777777777777766655555544433 3334678888888875432222 1469999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChh--hHHHHHHHHHHHH
Q 046849 86 FRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDD--IVAELEEDLQNSK 163 (760)
Q Consensus 86 l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~--~~~e~~~~l~~~R 163 (760)
+..+.+|+...+.+++..+++||..+- ..++..++-=|.+.+++.+=-..+.++-.+.-+.+.. .+..++.+|..+.
T Consensus 77 la~vqDYRqa~v~RlE~KVv~pL~~Y~-~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae~el~kas 155 (219)
T PF06730_consen 77 LAKVQDYRQAEVERLEAKVVEPLSQYG-TICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAESELQKAS 155 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHHHHHHHHH
Confidence 999999999999999999999999986 3344444433344443333322222222222211111 2345677777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 164 SAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 164 k~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
..-..+.-.+-..|..++.+|--++-..+.+|+.....|--++.+++..
T Consensus 156 ~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~ 204 (219)
T PF06730_consen 156 VDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTA 204 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777778888887766677777889999998888887777653
No 217
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.07 E-value=3.3e-05 Score=89.98 Aligned_cols=124 Identities=19% Similarity=0.089 Sum_probs=90.4
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
+|.++..+....+..++...+ .....-|..|...+|.++..|..-++ ...+-+|..++++| ..|
T Consensus 578 lhL~a~~lyawLie~~~e~~~---~~~~eld~d~qgV~hfca~lg~ewA~-----------ll~~~~~~ai~i~D--~~G 641 (975)
T KOG0520|consen 578 LHLLAELLYAWLIEKVIEWAG---SGDLELDRDGQGVIHFCAALGYEWAF-----------LPISADGVAIDIRD--RNG 641 (975)
T ss_pred HHHHHHHhHHHHHHHHhcccc---cCchhhcccCCChhhHhhhcCCceeE-----------EEEeeccccccccc--CCC
Confidence 666666666566666666411 22223445567777886666532111 11245688889999 999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
|||||+|+..|+..++..|+.-||+.++.-||+.-+-.|.|+-.+|...|| ..+--+|.+
T Consensus 642 ~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~---~gia~~lse 701 (975)
T KOG0520|consen 642 WTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGH---KGIAGYLSE 701 (975)
T ss_pred CcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccc---cchHHHHhh
Confidence 999999999999999999999999887656788888899999999999999 666666643
No 218
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=98.05 E-value=0.0035 Score=63.23 Aligned_cols=189 Identities=14% Similarity=0.190 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVE 101 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~ 101 (760)
..|+.|+..|++|.+.+..++..-.++..+...|+.++..++...++.. + ..+|..|++....+...+.....+..
T Consensus 29 ~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~---L-s~als~laev~~~i~~~~~~qa~qd~ 104 (234)
T cd07665 29 QEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTA---L-SRALSQLAEVEEKIEQLHQEQANNDF 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888887776667777777788888888886443322 2 26789999888888888888888888
Q ss_pred HHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHH----hhhhcCCChhhHH-------HHHHHHHHHHHHHH
Q 046849 102 HVLINRLTEFLTVDLHDAK---ESRRRFDKSIHAYDQAREKF----VSLKKNTRDDIVA-------ELEEDLQNSKSAFE 167 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~k---e~rk~fek~~~~Yd~al~ky----~s~~k~k~~~~~~-------e~~~~l~~~Rk~f~ 167 (760)
..+..||..++.- |..+| ..|.+-...+..-++-+.|. ..+....+++.+. +.+..+..+++.|.
T Consensus 105 ~~f~e~l~eYiRl-i~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe 183 (234)
T cd07665 105 FLLAELLADYIRL-LSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFE 183 (234)
T ss_pred HHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888898888632 33333 44443333333333323322 1121122344444 44445556677777
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
+.+--.=..+..++..+--+|=..+..|+.++...-++..++|+.+-|
T Consensus 184 ~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp 231 (234)
T cd07665 184 RISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLP 231 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 766666667777776666677777777777777777777777666544
No 219
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.01 E-value=9.6e-06 Score=90.00 Aligned_cols=97 Identities=22% Similarity=0.434 Sum_probs=68.6
Q ss_pred CcceeEEEEEEeeCCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCC
Q 046849 291 EVQTIKQGYLLKRSSN----LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFN 366 (760)
Q Consensus 291 ~~~~~k~G~L~K~~~~----~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (760)
...+.|+|.|.|+..+ .++.+|||||.|. +..|.|.++++..+.+.|
T Consensus 562 ~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT-~~~Ls~~Ksp~~q~~~~I---------------------------- 612 (800)
T KOG2059|consen 562 EPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLT-TEELSYAKSPGKQPIYTI---------------------------- 612 (800)
T ss_pred CCceecccceEeccccccchhhhhhhheEEEec-cceeEEecCCccCcccce----------------------------
Confidence 3445555666665432 2367899999998 788999998877665422
Q ss_pred CCccccccccccC--ceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 367 EDSLNCRTVDLRT--SAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 367 ~~~~~~~~i~l~~--~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
.|.. +.-+.+....+.+++|+|++++|+.+|||.+-.|.++|+.+|..+-
T Consensus 613 ---------pl~nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 613 ---------PLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred ---------eHHHHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 2221 1111122334668999999999999999999999999999998763
No 220
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.00 E-value=2e-06 Score=100.74 Aligned_cols=95 Identities=27% Similarity=0.234 Sum_probs=79.4
Q ss_pred cCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 046849 641 INTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGA 720 (760)
Q Consensus 641 ~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GA 720 (760)
+|....-..|.|+||.|+..|. ......+++.|+++|..| ..|+||||.+...|+...+.+|+++||
T Consensus 647 ~n~~~~~~~~~s~lh~a~~~~~-----------~~~~e~ll~~ga~vn~~d--~~g~~plh~~~~~g~~~~~~~ll~~~a 713 (785)
T KOG0521|consen 647 ENWPVVLCIGCSLLHVAVGTGD-----------SGAVELLLQNGADVNALD--SKGRTPLHHATASGHTSIACLLLKRGA 713 (785)
T ss_pred hccchhhhcccchhhhhhccch-----------HHHHHHHHhcCCcchhhh--ccCCCcchhhhhhcccchhhhhccccc
Confidence 4443344568999999999863 334445689999999999 999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHh
Q 046849 721 DINMRARPSIKDGGGLSSLERAMEMGAITDEELFILL 757 (760)
Q Consensus 721 dvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL 757 (760)
+.++ .|.+|++||++|.+..+ .+++.+|
T Consensus 714 ~~~a------~~~~~~~~l~~a~~~~~---~d~~~l~ 741 (785)
T KOG0521|consen 714 DPNA------FDPDGKLPLDIAMEAAN---ADIVLLL 741 (785)
T ss_pred cccc------cCccCcchhhHHhhhcc---ccHHHHH
Confidence 9776 99999999999998877 6666554
No 221
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.99 E-value=1.2e-05 Score=91.55 Aligned_cols=102 Identities=18% Similarity=0.313 Sum_probs=72.0
Q ss_pred CcceeEEEEEEeeC-CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCc
Q 046849 291 EVQTIKQGYLLKRS-SNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDS 369 (760)
Q Consensus 291 ~~~~~k~G~L~K~~-~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (760)
...+.-.|||..-- +...+.|+||||+|. +|.+.|++.+.+.. ..
T Consensus 987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~-gg~I~fWk~PdDEk---------------------------------rK 1032 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALH-GGEIKFWKYPDDEK---------------------------------RK 1032 (1116)
T ss_pred ccceeeeeeeeeeeccCCCchhhhhhHHhc-CCeeeeecCcchhc---------------------------------cc
Confidence 34566779987432 223347999999998 88888887665421 23
Q ss_pred cccccccccCceeccCC----CCCCCCceEEEEe---------c----Cc-eeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 370 LNCRTVDLRTSAIKMDG----EDTDLRLCFRIIS---------P----VK-TYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 370 ~~~~~i~l~~~~v~~~~----~~~~~~~~F~i~~---------~----~~-~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.+.+.|+|..|+-..-. +.-.|++.|.|.+ | .| ...|.|++.+|++.|+.+|+.+..
T Consensus 1033 ~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1033 VPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred CcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 45678999998865421 1125678899984 1 13 478999999999999999998764
No 222
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.98 E-value=4e-05 Score=82.33 Aligned_cols=108 Identities=23% Similarity=0.305 Sum_probs=60.7
Q ss_pred CCCCcceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCC
Q 046849 288 ATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNE 367 (760)
Q Consensus 288 ~~~~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (760)
-+..+.+.++|+|+-|. ..+|+|||.||||+..| |||..+.+.+... + -.++..|..++
T Consensus 311 l~s~~~pei~GfL~~K~-dgkKsWKk~yf~LR~SG-LYys~K~tsk~~r---------~--Lq~l~~~~~sn-------- 369 (622)
T KOG3751|consen 311 LSSSSPPEIQGFLYLKE-DGKKSWKKHYFVLRRSG-LYYSTKGTSKEPR---------H--LQCLADLHSSN-------- 369 (622)
T ss_pred HhcCCCccccceeeecc-cccccceeEEEEEecCc-ceEccCCCCCCch---------h--hHHHHhcccCc--------
Confidence 34567889999999886 45679999999999555 5665544332211 0 00000000000
Q ss_pred CccccccccccCceeccCCCCCCCCceEEEEecC-----ce-eEEEcCCHHHHHHHHHHHHHHH
Q 046849 368 DSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPV-----KT-YTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 368 ~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-----~~-~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
......-.-+.. ... .|||-|+... |. -+|+||++.-++.|+.||+-++
T Consensus 370 ------VYt~i~~rKkyk-sPT--d~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 370 ------VYTGIGGRKKYK-SPT--DYGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred ------eEEeecchhccC-CCC--CceEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 000001111111 112 2555554321 22 5899999999999999999886
No 223
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.90 E-value=2e-05 Score=74.19 Aligned_cols=65 Identities=23% Similarity=0.182 Sum_probs=59.4
Q ss_pred cCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 684 IKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFG-ADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 684 gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~G-Advn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+.++|+.| ..|||||+.|+..|+.+.|.+|+.+| |.|.. .|..|.+++.+|-..|+ .+++.+|-+
T Consensus 2 e~~in~rD--~fgWTalmcaa~eg~~eavsyllgrg~a~vgv------~d~ssldaaqlaek~g~---~~fvh~lfe 67 (223)
T KOG2384|consen 2 EGNINARD--AFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV------TDESSLDAAQLAEKGGA---QAFVHSLFE 67 (223)
T ss_pred CCCccchh--hhcchHHHHHhhhcchhHHHHHhccCcccccc------cccccchHHHHHHhcCh---HHHHHHHHH
Confidence 45788988 99999999999999999999999999 66665 99999999999999999 999988854
No 224
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=3.7e-05 Score=82.98 Aligned_cols=113 Identities=19% Similarity=0.384 Sum_probs=71.1
Q ss_pred cCCCCcceeEEEEEEee---------CCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccc
Q 046849 287 SATGEVQTIKQGYLLKR---------SSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRS 357 (760)
Q Consensus 287 ~~~~~~~~~k~G~L~K~---------~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 357 (760)
.+.+...+.|+|+|..+ ....+.+||.-|-+|+ |++.|+.+..-.+ |..
T Consensus 499 ~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~Lk--G~vLYlqkDey~p-~ka------------------- 556 (774)
T KOG0932|consen 499 PPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLK--GMVLYLQKDEYKP-GKA------------------- 556 (774)
T ss_pred CCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHh--hheEEeeccccCc-ccc-------------------
Confidence 34445678899999733 3335668999999995 5655654432211 100
Q ss_pred cccCCCCCCCCccccccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHHHHHhhh
Q 046849 358 RHYRSSSFNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGVIASLLN 430 (760)
Q Consensus 358 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 430 (760)
.-+..+ ...|.+--+-..+..+-.++.|+|.|.+.+ |.|.|||.|.+||..||..|+-+. .+++
T Consensus 557 -------lse~~l-knavsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA-A~fS 621 (774)
T KOG0932|consen 557 -------LSESDL-KNAVSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVA-AAFS 621 (774)
T ss_pred -------hhhhhh-hhhhhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHH-Hhcc
Confidence 000000 112233222233335566788999999987 899999999999999999998654 3444
No 225
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=97.86 E-value=0.012 Score=58.40 Aligned_cols=179 Identities=12% Similarity=0.176 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQV 100 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~ 100 (760)
.+-++.|...|..+.|...++..-...+......|...+..++.... .+ +..|...|..+..+......+...
T Consensus 20 key~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~-----~l-~~~le~~g~~~d~~~~~~~~~~~~- 92 (201)
T cd07622 20 KNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEK-----EM-GDGLQKAGHYMDSYAASIDNGLED- 92 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----hH-HHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33445555566555655555555545544445556666666553221 11 234555555555544444443333
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 101 EHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
...+..||..++ .....++..-|.-+..|-.|+.+.+..... ..+...++..++..|....-+....+..+
T Consensus 93 ~~~f~e~LkEy~-~ya~slk~vlk~r~~~q~~~e~~~~~L~~k--------~~~l~~~ve~a~~~~e~f~~~~~~E~~rF 163 (201)
T cd07622 93 EELIADQLKEYL-FFADSLRAVCKKHELLQYDLEKAEDALANK--------KQQGEEAVKEAKDELNEFVKKALEDVERF 163 (201)
T ss_pred hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888988876 334555555555566666666655443222 23477888899999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046849 181 EAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEP 215 (760)
Q Consensus 181 ~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~ 215 (760)
+..|..++-+.+.+|...|..||+.+.+.|..+..
T Consensus 164 ~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~ 198 (201)
T cd07622 164 KKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKE 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998877653
No 226
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.84 E-value=0.011 Score=58.38 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
++.++..|+++.+.+..++..-.+...+...|+.++..+++....+.. .+ ...|.++++....+.........+....
T Consensus 13 l~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~-~l-~~~l~~lse~~e~i~~~~~~~a~~d~~~ 90 (198)
T cd07630 13 NTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVV-AL-NRLCTKLSEALEEAKENIEVVAGNNENT 90 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555444444455567777776653322210 22 2578889988888888888888888889
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 104 LINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAK 183 (760)
Q Consensus 104 ~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~ 183 (760)
+..||..++ ..|..+|++=.+=-++...|+++-.- +.|.+ +.....++....+++..|...|--.=..|..++.+
T Consensus 91 Lg~~L~~Y~-r~i~a~K~~l~~R~~~~~~~~~a~k~---l~Kar-~~k~~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~ 165 (198)
T cd07630 91 LGLTLDLYS-RYSESEKDMLFRRTCKLIEFENASKA---LEKAK-PQKKEQAEEAKKKAETEFEEISSLAKKELERFHRQ 165 (198)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887 45666665554444555555554222 22322 33334566677778888888887777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 184 KKYEFLESISAIMDVHLRYFKLGFDLLS 211 (760)
Q Consensus 184 k~~e~l~~l~~~~~a~~~ff~~g~~~~~ 211 (760)
+--+|=..++.|+..+..--+..++++.
T Consensus 166 Rv~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 166 RVLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777776666665555543
No 227
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.84 E-value=5.1e-05 Score=86.57 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=62.8
Q ss_pred cceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccc
Q 046849 292 VQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLN 371 (760)
Q Consensus 292 ~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (760)
..+.+.|||+|.+... .|++|||.+.+++....+....+. .+. ....
T Consensus 375 sDv~~~G~l~k~~~~~--~wk~ry~~l~~~~l~~~~~~~~~~-~~~----------------------------~~~~-- 421 (478)
T PTZ00267 375 SDVTHGGYLYKYSSDM--RWKKRYFYIGNGQLRISLSENPEN-DGV----------------------------APKS-- 421 (478)
T ss_pred CCcccceEEeccCCCc--chhhheEEecCCceEEEecccccc-CCC----------------------------CCcc--
Confidence 3567799999997544 499999999865555554432221 110 0000
Q ss_pred cccccccCceeccCCCCCCCCceEEEEe-cCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 372 CRTVDLRTSAIKMDGEDTDLRLCFRIIS-PVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~~~~~~~F~i~~-~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
.....+..+...+......+++||-|.+ ..+.+.|+|+|++||++||.+|+.++
T Consensus 422 ~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 422 VNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred ccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 0011122222111112345689999976 45789999999999999999999876
No 228
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=97.82 E-value=0.014 Score=56.82 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC-CCCCCCccccchhHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG-GHDDPVSVSIGGPVISKFISAFRELATY 92 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~-~~~d~~~~~~~~~~l~~f~~~l~el~~~ 92 (760)
|-+..-|-.-++.|.=-|.+|+-..+.|..++..+..+...|.++|..+|. ......+-.+ |.+|...++..+++...
T Consensus 5 ~lt~~~ykni~eqfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeL-G~~L~qi~ev~r~i~~~ 83 (226)
T cd07645 5 KLTESTYKNVMEQFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKEL-GHVLMEISDVHKKLNDS 83 (226)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHHHH
Confidence 455666777788899999999999999999999999999999999988873 1223333444 47899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCC----Chhh--HHHHHH-HHHH
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKF----VSLKKNT----RDDI--VAELEE-DLQN 161 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky----~s~~k~k----~~~~--~~e~~~-~l~~ 161 (760)
.+.++...-.-++.||++=++-|++-.....|+|......=-..++|- -.+.++. .+.. ..|.+- +...
T Consensus 84 le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~ 163 (226)
T cd07645 84 LEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVT 163 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 888888888999999999998898888888888877665444444443 2333332 1211 111110 1112
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 162 SKSAFEKSRFNLVSALTNIEAKKKYE-FLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 162 ~Rk~f~~asldyv~~i~~l~~~k~~e-~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
.|+.=.++=..--++=..++++++|- +|+--+++......|+.+|.+++.+
T Consensus 164 ~~q~el~~f~~~~~k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~ 215 (226)
T cd07645 164 SRQSDIQKFIADGCREALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNS 215 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211111111112333445665554 5567778888888899999998864
No 229
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=97.78 E-value=0.019 Score=55.34 Aligned_cols=198 Identities=14% Similarity=0.256 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC-CCCCCccccchhHHHHHHHHHHHHH
Q 046849 12 MFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG-HDDPVSVSIGGPVISKFISAFRELA 90 (760)
Q Consensus 12 ~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~-~~d~~~~~~~~~~l~~f~~~l~el~ 90 (760)
..|.+...|-.-++.|.=-|.+|+-..++|..++..+..+...|.++|..+|.. .....+-.+ |.+|...++..+.+.
T Consensus 3 ~~r~t~~~Yk~imeqFNP~lrnlv~lGk~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~~s~~s~~L-G~vLmqisev~r~i~ 81 (215)
T cd07644 3 LYRSTISIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIAKIGEQALQSLTSQSL-GEILIQMSETQRKLS 81 (215)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHH
Confidence 358888999999999999999999999999999999999999999999888732 222222233 578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCCChhhHHHHHHHHHHHHHHH
Q 046849 91 TYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKF----VSLKKNTRDDIVAELEEDLQNSKSAF 166 (760)
Q Consensus 91 ~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky----~s~~k~k~~~~~~e~~~~l~~~Rk~f 166 (760)
...+..+...-.-++.||++=++-|.+=+...+|+|+-....=-.+++|- ..+.|+.+.. ..|..+-+...+..-
T Consensus 82 ~~le~~lk~FH~ell~~LEkk~elD~kyi~~s~KkYq~E~r~k~dsleK~~selkk~rrk~qkn-~~e~kE~~~~lq~~~ 160 (215)
T cd07644 82 ADLEVVFQTFHVDLLQHMDKNTKLDMQFIEDSRRVYELEYRHRAANLEKCMSELWRMERQRDRN-VREMKENVNRLRQSM 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHH
Confidence 99898889888999999999999998888888888887655444444443 3344432221 134443333333221
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 046849 167 EKSRFNLVSALTNIEAKKKYEFLE-SISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 167 ~~asldyv~~i~~l~~~k~~e~l~-~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
++-++=-++=..++.++++-||. .-+.+-.-+..|-++|.+++..
T Consensus 161 -~~f~~~~~k~Al~eErRRy~Flvek~c~~~k~~~~yh~ka~~ll~~ 206 (215)
T cd07644 161 -QAFLKESQRAAELEEKRRYRFLAEKHYLLNNTFLQFQSRARGMLQT 206 (215)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122224455567777776654 4556666666777788888764
No 230
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.76 E-value=0.017 Score=56.70 Aligned_cols=177 Identities=12% Similarity=0.065 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 046849 18 FSMEESAEELKDRCQ-RLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELL 96 (760)
Q Consensus 18 ~~~e~~l~~l~~~l~-kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l 96 (760)
..+|+.+..++.-|. .+.|..++++.....+......|...+..|+...... .+ +..|.+||.++.........+
T Consensus 7 ~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~---~L-~~~le~~g~a~D~~~~~~~~l 82 (187)
T cd07629 7 TDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKS---EL-AEALEKVGQAVDSTYLATEAL 82 (187)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch---hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666663 4566555555555555444555666666666432111 22 367999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHH-HHHHH
Q 046849 97 RSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSR-FNLVS 175 (760)
Q Consensus 97 ~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~as-ldyv~ 175 (760)
...+...+.+||..++ ..+..++..-+.-+..+..|+. +..++ .+++.++.+.|...+ -..-.
T Consensus 83 ~~~l~~~f~EpL~E~~-~y~~s~k~vlk~R~~K~~Q~e~-l~~~L--------------~e~~~~~~~~~~~~~~~~~~~ 146 (187)
T cd07629 83 VGSLYYNINEPLSESA-QFAGVVRELLKYRKLKHVQYEM-TKDSL--------------LESALVAASDDLVISSTIKQK 146 (187)
T ss_pred HHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 3455555555555555555654 33333 222234445566653 66667
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 176 ALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIE 214 (760)
Q Consensus 176 ~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~ 214 (760)
.|..++..+.-++=+.+.+|...|..|+.+..+.|.++.
T Consensus 147 el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~ 185 (187)
T cd07629 147 DLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAK 185 (187)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888899888889999999999999999999988887653
No 231
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=97.75 E-value=0.029 Score=55.24 Aligned_cols=198 Identities=14% Similarity=0.207 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC-CCCCCccccchhHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG-HDDPVSVSIGGPVISKFISAFRELATY 92 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~-~~d~~~~~~~~~~l~~f~~~l~el~~~ 92 (760)
|-+..-|-.-++.+.=-+.+++...++|..++..+..+...|.++|..++.. .....+-.+ |.+|.+.+...+++...
T Consensus 7 ~~t~~~yk~imeqfnP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeL-G~~L~~m~~~hr~i~~~ 85 (232)
T cd07646 7 RLTENVYKTIMEQFNPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKEL-GDVLFQMAEVHRQIQNQ 85 (232)
T ss_pred HHhHHHHHHHHHccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHH-HHHHHHHHHHHHHHHHH
Confidence 3344455556666777888999999999999999999999999999887721 111123344 47899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHhhhhcC----CChhhHHHHHHHHHH---
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIH----AYDQAREKFVSLKKN----TRDDIVAELEEDLQN--- 161 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~----~Yd~al~ky~s~~k~----k~~~~~~e~~~~l~~--- 161 (760)
.+.+...+-..++.||+.=++-|++-.....|+|..... .|+.+.+-.-.+.|+ +.+..-.+-+.+.-+
T Consensus 86 le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~ 165 (232)
T cd07646 86 LEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAIS 165 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Confidence 899999999999999999999888887777777754443 344433333334443 222221111112111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 162 SKSAFEKSRFNLVSALTNIEAKKKYE-FLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 162 ~Rk~f~~asldyv~~i~~l~~~k~~e-~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
.|+.=.++=..--++=..+++++++- +|+.=+++......|..+|.+++.+
T Consensus 166 ~~q~ele~f~~~~~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~ 217 (232)
T cd07646 166 NKQGELENYVSDGYKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQ 217 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211111111112333456666654 4566777778888888888888764
No 232
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=97.73 E-value=0.025 Score=56.38 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
++.++..|+++.+.+..++..-.+...+...|+.++..+++... . .+ ...|.++++....+.........+..-.
T Consensus 33 l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~--t--~L-~~~ls~lae~~ek~~~l~~r~A~~d~l~ 107 (219)
T cd07621 33 LVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEP--T--PL-DKFLLKVAETFEKLRKLEGRVASDEDLK 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c--hH-HHHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 34555566666666666655555555556677888887775432 1 22 2467777777766665555555555556
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 104 LINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNT-RDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEA 182 (760)
Q Consensus 104 ~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k-~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~ 182 (760)
+..+|..++ .++..+|+.=-+=-++...|+++-. .+.|++ ++..+.+++....++++.|.+.|---=..|..++.
T Consensus 108 L~e~L~~Y~-r~~~A~K~~l~rR~ral~~~q~A~k---~L~KaR~k~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~ 183 (219)
T cd07621 108 LSDTLRYYM-RDTQAAKDLLYRRLRCLANYENANK---NLEKARAKNKDVHAAEAAQQEACEKFESMSESAKQELLDFKT 183 (219)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555 3345544433333344445544422 233322 35567788889999999999998888888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 183 KKKYEFLESISAIMDVHLRYFKLGFDLLS 211 (760)
Q Consensus 183 ~k~~e~l~~l~~~~~a~~~ff~~g~~~~~ 211 (760)
++--+|=..++.|...+..--+..++++.
T Consensus 184 ~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~ 212 (219)
T cd07621 184 RRVAAFRKNLVELAELEIKHAKAQIQLLK 212 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87778888888887777776666666554
No 233
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.71 E-value=1.9e-05 Score=85.25 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=67.5
Q ss_pred hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCC
Q 046849 617 IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQG 696 (760)
Q Consensus 617 L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G 696 (760)
+|.++...+...+.+.+..... ......|..|.||||+|+..|+.. ....++.+|||+-.+| .+|
T Consensus 24 lh~~~~~~~~~sl~~el~~~~~--~~id~~D~~g~TpLhlAV~Lg~~~-----------~a~~Ll~a~Adv~~kN--~~g 88 (560)
T KOG0522|consen 24 LHWAVVTTDSDSLEQELLAKVS--LVIDRRDPPGRTPLHLAVRLGHVE-----------AARILLSAGADVSIKN--NEG 88 (560)
T ss_pred cchhhhccchhhHHHHHhhhhh--ceeccccCCCCccHHHHHHhcCHH-----------HHHHHHhcCCCccccc--ccc
Confidence 7777777777777766554422 333347788999999999998643 2334588999999999 999
Q ss_pred ChHHHHHHHcCCHHHHHHHHHc
Q 046849 697 GSLLHLACQCGNLVMLELLIQF 718 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~ 718 (760)
|+|||.|+..|+..++..+|.+
T Consensus 89 Ws~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 89 WSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred ccHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999988777765
No 234
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=97.70 E-value=0.028 Score=55.39 Aligned_cols=189 Identities=17% Similarity=0.219 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHH
Q 046849 11 PMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELA 90 (760)
Q Consensus 11 P~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~ 90 (760)
|+|-.... .++.+...|+++...+.+++..-.+.......|+.++..++.. +.... ...|.++++....+.
T Consensus 23 ~wFe~ek~----~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~--e~t~L---~~~l~~laev~eki~ 93 (218)
T cd07662 23 DFFEHERT----FLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQ--DSTDI---CKFFLKVSELFDKTR 93 (218)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhH---HHHHHHHHHHHHHHH
Confidence 45544433 3455557777777777777777777777777888888887764 22221 256777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-hhhHHHHHHHHHHHHHHHHHH
Q 046849 91 TYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR-DDIVAELEEDLQNSKSAFEKS 169 (760)
Q Consensus 91 ~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~-~~~~~e~~~~l~~~Rk~f~~a 169 (760)
..+......-...+.+-|..++ .++..+|++=-+=-++...|+++-.. +.|.+. ...+.+++..+.++++.|.+.
T Consensus 94 ~l~~~~A~~e~l~L~e~L~~Y~-r~~~A~Kdll~rR~r~l~~~enA~k~---L~KaR~~~kev~~aE~~~~~a~~~Fe~I 169 (218)
T cd07662 94 KIEARVAADEDLKLSDLLKYYL-RESQAAKDLLYRRSRSLVDYENANKA---LDKARAKNKDVLQAETTQQLCCQKFEKI 169 (218)
T ss_pred HHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 6555554444445555555544 44555555444444455556554332 222211 244567888899999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 170 RFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 170 sldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
|---=..|..++.++--+|=..|+.|+..+..-.+..++++..
T Consensus 170 S~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~ 212 (218)
T cd07662 170 SESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQS 212 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888888888877778888888877777776666666543
No 235
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.69 E-value=0.00015 Score=60.35 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=60.9
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
+.+.|.+.||.| + .++||=++|.+...|+|.........|
T Consensus 1 Il~~g~v~Kr~g-l--f~kkR~LiLTd~PrL~yvdp~~~~~Kg------------------------------------- 40 (89)
T cd01262 1 ILKIGAVKKRKG-L--FAKKRQLILTNGPRLIYVDPVKKVVKG------------------------------------- 40 (89)
T ss_pred Cceeeeeeehhc-c--ccceeeEEEecCceEEEEcCCcCeEEe-------------------------------------
Confidence 357899999975 3 589999999977888888755443333
Q ss_pred cccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.|......+++.. .....|.|.||+|+|+|. +.+.....|+++|+.+
T Consensus 41 eIp~s~~~l~v~~---~~~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 41 EIPWSDVELRVEV---KNSSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred EecccccceEEEE---ecCccEEEECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 3444331222211 112469999999999995 5568899999999765
No 236
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.68 E-value=0.035 Score=55.96 Aligned_cols=181 Identities=11% Similarity=0.185 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQV 100 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~ 100 (760)
.+.++.|...|..+.|...+++.....+......|+..+...+... . .+ +..|+.|+..+.........+....
T Consensus 57 ~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE-~----~l-~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 57 GDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLE-G----EL-AEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-H----HH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555544444443333333333444443333211 1 11 2458888888888888877777777
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 101 EHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
+..+..+|..++ -.+..+|..=|.=|..|.+|+..++-. .+.+ +.++..+.++.++.+.+.-+.-+....+..+
T Consensus 131 ~~~yl~~Lke~~-~Y~~slk~vlK~RdqkQ~d~E~l~E~l-~~rr----e~~~kLe~~ie~~~~~ve~f~~~~~~E~~~F 204 (240)
T cd07667 131 TEDFLPVLREYI-LYSESMKNVLKKRDQVQAEYEAKLEAV-ALRK----EERPKVPTDVEKCQDRVECFNADLKADMERW 204 (240)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888898886 557777777888888999998866553 3322 3344556667777777777777888999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 181 EAKKKYEFLESISAIMDVHLRYFKLGFDLLSKI 213 (760)
Q Consensus 181 ~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~ 213 (760)
+..|..||-..+.+|-..|..||+...+.|+.+
T Consensus 205 e~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 205 QNNKRQDFRQLLMGMADKNIQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887654
No 237
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=97.63 E-value=5e-05 Score=80.68 Aligned_cols=95 Identities=22% Similarity=0.388 Sum_probs=76.4
Q ss_pred ceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 293 QTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 293 ~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
-....|+|.|....+ ..|+-|||+|. +|-|.||+++.+...|| +
T Consensus 23 w~e~~G~lskwtnyi-~gwqdRyv~lk-~g~Lsyykse~E~~hGc----------------------------------R 66 (611)
T KOG1739|consen 23 WVERCGVLSKWTNYI-HGWQDRYVVLK-NGALSYYKSEDETEHGC----------------------------------R 66 (611)
T ss_pred chhhcceeeeeeccc-ccccceEEEEc-ccchhhhhhhhhhhccc----------------------------------c
Confidence 344579999997544 48999999999 78888999888877774 5
Q ss_pred ccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
+.|.|....+.....+. ..|.|.+....+++.|...+.++.|+.+|.--..
T Consensus 67 gsi~l~ka~i~ahEfDe---~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 67 GSICLSKAVITAHEFDE---CRFDISVNDNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred eeeEeccCCcccccchh---heeeeEeccceeeehhcCcHHHHHHHHHHHHHhh
Confidence 67888888887643333 4599999999999999999999999999986653
No 238
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=97.62 E-value=0.045 Score=54.38 Aligned_cols=179 Identities=17% Similarity=0.244 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
++.++..|+++.+.+.+++..-.++..+...|+.+|..++ ..++. .+ ..+|.++++....+...+.....+....
T Consensus 32 l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~--~ee~t--~L-~kals~lae~~Ek~~~l~~r~A~~d~~~ 106 (218)
T cd07663 32 LVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVA--AEEPT--VI-KKYLLKVAELFEKLRKVEDRVASDQDLK 106 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccc--hH-HHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4455566666666666666665555555556677776653 22221 12 2567777777777666666666666667
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 104 LINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKN-TRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEA 182 (760)
Q Consensus 104 ~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~-k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~ 182 (760)
+.++|..++ .++..+|+.=-+=-++...|+.+-.. +.|. -+...+.+++..+.++.+.|.+.|---=..|..++.
T Consensus 107 L~e~L~~Y~-r~~~A~K~ll~rR~ral~~~e~A~~~---L~KaR~k~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~ 182 (218)
T cd07663 107 LTELLRYYM-LNIEAAKDLLYRRARALADYENSNKA---LDKARLKSKDVKQAEAHQQECCQKFEKLSESAKQELISFKR 182 (218)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776665 44555554443334444555554322 2222 123445678888999999999998888888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 183 KKKYEFLESISAIMDVHLRYFKLGFDLLS 211 (760)
Q Consensus 183 ~k~~e~l~~l~~~~~a~~~ff~~g~~~~~ 211 (760)
++--+|=..++.|+..+..-.+..++++.
T Consensus 183 ~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~ 211 (218)
T cd07663 183 RRVAAFRKNLIEMTELEIKHAKNNVSLLQ 211 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777776666666554
No 239
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=97.51 E-value=0.09 Score=49.64 Aligned_cols=187 Identities=16% Similarity=0.237 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 26 ELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLI 105 (760)
Q Consensus 26 ~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~ 105 (760)
.-+++=+.+++.+..++....+.......|++--..+|........ .+ ..+-..|+.+.+.++.-++.|+.-+...+.
T Consensus 12 aaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~~~~~-~L-srAa~~yG~a~~~mEkEre~l~r~l~~QV~ 89 (209)
T cd07607 12 AAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENPSVNT-AL-SRASLHYGSARNQMEKERENLHRVLSEQVA 89 (209)
T ss_pred HHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCCCccc-HH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777776666556656667778777778753222111 11 245678999999999999999999999999
Q ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCC----hh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 106 NRLTEFLTV-DLHDAKESRRRFDKSIHAYDQAREKFVS-LKKNTR----DD---IVAELEEDLQNSKSAFEKSRFNLVSA 176 (760)
Q Consensus 106 ~pL~~f~~~-~l~~~ke~rk~fek~~~~Yd~al~ky~s-~~k~k~----~~---~~~e~~~~l~~~Rk~f~~asldyv~~ 176 (760)
+||...+.. -|...+.+..+||+.+.+-++....... ..|.++ |+ +++-++..|.+.+...---.-+-...
T Consensus 90 ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M~~LGKEA~aA 169 (209)
T cd07607 90 EPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSA 169 (209)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999998865 4677788889999999998876555432 223222 22 34566666777777666666677888
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 177 LTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIE 214 (760)
Q Consensus 177 i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~ 214 (760)
|..++.+.----++.|++.+.+--+|++...+++.+++
T Consensus 170 m~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~ 207 (209)
T cd07607 170 MLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLH 207 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888766556788999999999999998888877654
No 240
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.50 E-value=0.00074 Score=57.97 Aligned_cols=39 Identities=8% Similarity=0.249 Sum_probs=35.4
Q ss_pred CCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 387 EDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 387 ~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
+...-+++|.|.++.+++.+||+|.++..+||..|+.++
T Consensus 60 D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 60 DRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence 444568999999999999999999999999999999886
No 241
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.48 E-value=6.1e-05 Score=81.73 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhhhhcCCCCccccchhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCcccccc
Q 046849 578 RKPCSKDVFHYKEQYINAKYVEKLLVIRDTSDAKSRTTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHV 657 (760)
Q Consensus 578 ~kp~~~~~~~~re~fI~~KY~~k~Fv~~~~~~~~~~~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A 657 (760)
-.|.+......-.+.+++-..+. +..+..-...|..+.+..-.-.|+- + |+||+|
T Consensus 614 LaPl~~te~~lgqqLl~A~~~~D-------------l~t~~lLLAhg~~~e~~~t~~~~~g-------r-----t~LHLa 668 (749)
T KOG0705|consen 614 LAPLPCTEEPLGQQLLRAVAAED-------------LQTAILLLAHGSREEVNETCGEGDG-------R-----TALHLA 668 (749)
T ss_pred cCCCCCCCCchHHHHHHHHHHHH-------------HHHHHHHHhccCchhhhccccCCCC-------c-----chhhhh
Confidence 35666555556666666655432 2222222234544555444333311 2 799999
Q ss_pred ccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 046849 658 DNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADIN 723 (760)
Q Consensus 658 ~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn 723 (760)
|..|+.. +..+|+-+|+|+-+.| .+|+|||.||-+.|.-+|+.+||++|+.-+
T Consensus 669 ~~~gnVv-----------l~QLLiWyg~dv~~rd--a~g~t~l~yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 669 ARKGNVV-----------LAQLLIWYGVDVMARD--AHGRTALFYARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred hhhcchh-----------HHHHHHHhCccceecc--cCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence 9998533 3445577899999999 999999999999999999999999998644
No 242
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.48 E-value=0.00048 Score=60.13 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCCceEEEEecC--ceeEEEcCCHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPV--KTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 390 ~~~~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
++.+||-|.+.. .+.+|..|+..|+..|..+|+.
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 567999999987 4699999999999999999864
No 243
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.46 E-value=0.13 Score=51.84 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHH
Q 046849 9 DSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRE 88 (760)
Q Consensus 9 DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~e 88 (760)
.--.||-.|..+--....+...+++++|.=+.+..+.. .|..++..++.....+ .+ +.++.++++....
T Consensus 19 el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~-------dfg~~l~~Ls~~E~~~---~L-~~a~~kLg~v~~~ 87 (230)
T cd07625 19 ELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEA-------DFGQKLIQLSVEETHH---GL-GNLYEKFGKVLTA 87 (230)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcccc---hH-HHHHHHHHHHHHH
Confidence 33468888888888888888888888887666666544 4666776665322111 22 3689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HH-HHHHHHHHHHHHHHHHHhhhhc-----CCChhhHHHHHHHH
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLTVDLHDAKE---SR-RRFDKSIHAYDQAREKFVSLKK-----NTRDDIVAELEEDL 159 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke---~r-k~fek~~~~Yd~al~ky~s~~k-----~k~~~~~~e~~~~l 159 (760)
+...+..-.+..-..+.+||..++. ++..+|+ -| .-|...+.--.+...|..+..| +.+|+++.|+..+|
T Consensus 88 v~dl~~~QA~~d~~tl~d~L~~~~~-~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l 166 (230)
T cd07625 88 VGDIDSIQATVDMATLYDGLEWISR-DAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQL 166 (230)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Confidence 9999888888888899999998873 3444442 22 2222222222223333333322 22366677777777
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 046849 160 QNSKSA-------FEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKL 205 (760)
Q Consensus 160 ~~~Rk~-------f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~ 205 (760)
.++.+. |...+-.....+..+...+.-+|-..+..|+..+..+=.+
T Consensus 167 ~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk 219 (230)
T cd07625 167 EEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERK 219 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544 4444444444444444333333444444444444443333
No 244
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=97.40 E-value=0.00019 Score=61.24 Aligned_cols=97 Identities=15% Similarity=0.322 Sum_probs=62.1
Q ss_pred ceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccc
Q 046849 293 QTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNC 372 (760)
Q Consensus 293 ~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (760)
..+..||+.|-+|++-..|++|||-|-.+ .|-+|.......+. ++
T Consensus 2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPN-RLE~~~~~~~~~~e--------------Li-------------------- 46 (116)
T cd01240 2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPN-RLELYGESEANKPE--------------LI-------------------- 46 (116)
T ss_pred ceEEeeehhhhCCHHHHHHHHHHheeCcc-eeeecccccccCCc--------------EE--------------------
Confidence 35779999999999888999999999844 44444322221100 00
Q ss_pred ccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
..-++.. |.++-....-..|..|...+ +.++|+++++-+..+|...|+++-.
T Consensus 47 ~M~~i~~--V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 47 TMDQIED--VSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred Eeehhhh--cchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 0001111 11111111335799888765 6699999999999999999998854
No 245
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.37 E-value=0.0015 Score=56.27 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=36.8
Q ss_pred cccccCceeccCCCCCCCCceEEEEecC---ceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISPV---KTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~~---~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
.|.+..-.+....+ .+ +++|.|.+.+ ++|.|||.|.++.+.||++|+.+|
T Consensus 43 ~i~~~~l~i~e~~~-~d-~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 43 YIPCKNLMLVEHLP-GE-PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred EEEecceEEecCCC-CC-CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 44444433433222 23 7999998764 689999999999999999999876
No 246
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.36 E-value=7e-05 Score=84.34 Aligned_cols=57 Identities=30% Similarity=0.423 Sum_probs=51.2
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCC-CCCCcHHHHHHHcCCCChH
Q 046849 687 SNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKD-GGGLSSLERAMEMGAITDE 751 (760)
Q Consensus 687 vn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d-~~G~TpL~~A~~~g~~~~~ 751 (760)
.|++| ..|+|+||+|+..|..++++-||++|+|++. +| ..|+||||-|+..||++|+
T Consensus 45 anikD--~~GR~alH~~~S~~k~~~l~wLlqhGidv~v------qD~ESG~taLHRaiyyG~idca 102 (1267)
T KOG0783|consen 45 ANIKD--RYGRTALHIAVSENKNSFLRWLLQHGIDVFV------QDEESGYTALHRAIYYGNIDCA 102 (1267)
T ss_pred hhHHH--hhccceeeeeeccchhHHHHHHHhcCceeee------ccccccchHhhHhhhhchHHHH
Confidence 46677 8999999999999999999999999999988 78 5699999999999995553
No 247
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=97.35 E-value=0.046 Score=54.16 Aligned_cols=170 Identities=16% Similarity=0.277 Sum_probs=102.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHH---HHHHHHHHHH
Q 046849 19 SMEESAEELKD---RCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKF---ISAFRELATY 92 (760)
Q Consensus 19 ~~e~~l~~l~~---~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f---~~~l~el~~~ 92 (760)
++|.|++.|++ ....+++..+.+..-+-.....+.++.++|.++..-.. ..=..| ++..+-+...
T Consensus 126 ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~---------elq~eft~nseTqr~l~kn 196 (341)
T KOG3876|consen 126 ELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSP---------ELQEEFTYNSETQRLLGKN 196 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH---------HHHHHhCcCHHHHHHHhhh
Confidence 56777777765 44455666666665555555667788888877652111 111112 3333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--Ch--hhHHHHHHHHHHHHHHHHH
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNT--RD--DIVAELEEDLQNSKSAFEK 168 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k--~~--~~~~e~~~~l~~~Rk~f~~ 168 (760)
-+.| ...-+.++..++.++...|..---.-++||.++.+||+...-...+.-+- .+ ..+.++.....+.|..|.+
T Consensus 197 getL-l~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~~~t~~~le~aq~~~q~hkekYeK 275 (341)
T KOG3876|consen 197 GETL-LGALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLGPRDALTKNLLEGAQEKFQAHKEKYEK 275 (341)
T ss_pred HHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccccccccccHHHHHHHHHHHHHHHH
Confidence 3332 34445667777777777777777777888888888888777665553221 11 1123444455567788999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 046849 169 SRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLG 206 (760)
Q Consensus 169 asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g 206 (760)
-.-|...+|.-+++.+ ++.||.|+-.||.+
T Consensus 276 lrnDvaiKmkfLeENr--------IkVmh~QL~llhnA 305 (341)
T KOG3876|consen 276 LRNDVAIKMKFLEENR--------IKVMHKQLELLHNA 305 (341)
T ss_pred hhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHH
Confidence 8889888888777654 34556666666543
No 248
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=97.31 E-value=0.27 Score=50.80 Aligned_cols=160 Identities=12% Similarity=0.209 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCC------CCCCccccchhHHHHHHHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGH------DDPVSVSIGGPVISKFISAFRELATYKEL 95 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~------~d~~~~~~~~~~l~~f~~~l~el~~~~~~ 95 (760)
++++.+..+++.=++.|+.+..-+.+-......|+..|..+...+ .+....++ ..++..|-..+..+...+..
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~-~~aw~~i~~e~~~~a~~H~~ 83 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSS-VKAFRSILNEVNDIAGQHEL 83 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccH-HHHHHHHHHHHHHHHHHHHH
Confidence 455666666766677777777666666666677777776654211 11112222 14566666666777788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--ChhhH
Q 046849 96 LRSQVEHVLINRLTEFLTVDL---------------------HDAKESRRRFDKSIHAYDQAREKFVSLKKNT--RDDIV 152 (760)
Q Consensus 96 l~~~~~~~~~~pL~~f~~~~l---------------------~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k--~~~~~ 152 (760)
+...+...+..||..|+++.- ..+...|+.|++...+.+.+..++....+.. .+..+
T Consensus 84 ~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~ 163 (251)
T cd07653 84 IAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADV 163 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhH
Confidence 999999999999999975432 2344555666666666666656654433221 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 153 AELEEDLQNSKSAFEKSRFNLVSALTNIEA 182 (760)
Q Consensus 153 ~e~~~~l~~~Rk~f~~asldyv~~i~~l~~ 182 (760)
.-....+......+..+-=+|...|..+..
T Consensus 164 eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~ 193 (251)
T cd07653 164 EKAKANANLKTQAAEEAKNEYAAQLQKFNK 193 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444555555555666666665543
No 249
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.29 E-value=0.00042 Score=79.42 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=91.8
Q ss_pred hhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCC
Q 046849 615 TSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCL 694 (760)
Q Consensus 615 ~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~ 694 (760)
.+...|+..||...|.+.+.......+|.+..|.-|.++||+|..+.+.++ ...+++++..+
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~-----------~eLLl~~~~~~------- 88 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLEL-----------QELLLDTSSEE------- 88 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHH-----------HHHHhcCcccc-------
Confidence 348889999999999999987654447777889999999999999865433 33344444332
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCcccc----CCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADINMR----ARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~----Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.-+|.+|...|.+++|++|+.+-....-. ......-.-+.|||.+|+..+| .||+++|+.
T Consensus 89 --gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn---yEil~~Ll~ 152 (822)
T KOG3609|consen 89 --GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNN---FEILQCLLT 152 (822)
T ss_pred --chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcc---hHHHHHHHH
Confidence 34789999999999999999874432111 2334456778999999999999 899998864
No 250
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.29 E-value=0.17 Score=51.35 Aligned_cols=180 Identities=10% Similarity=0.144 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVE 101 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~ 101 (760)
+.++.|...|..+-|...+++....++......|.-.+...++...+ + +..|..|+..+.............+.
T Consensus 61 ey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~-----L-~~~L~~~a~~~d~~~~~~~~~~~~l~ 134 (243)
T cd07666 61 EYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE-----L-ADSLKGMASCIDRCCKATDKRMKGLS 134 (243)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh-----h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444333333233333333333322222 1 25689999888877776677667777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 102 HVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIE 181 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~ 181 (760)
..+..||..++ ..+..+|..=+.=+..|.+|+...+-.... + ++. .++..++.+....-..++-+.=..+..++
T Consensus 135 ~~f~~~Lkeyv-~y~~slK~vlk~R~~~Q~~le~k~e~l~k~-~---~dr-~~~~~ev~~~e~kve~a~~~~k~e~~Rf~ 208 (243)
T cd07666 135 EQLLPVIHEYV-LYSETLMGVIKRRDQIQAELDSKVEALANK-K---ADR-DLLKEEIEKLEDKVECANNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888876 334444433333368888888766554442 2 222 23344444444444444555557888888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 182 AKKKYEFLESISAIMDVHLRYFKLGFDLLSKI 213 (760)
Q Consensus 182 ~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~ 213 (760)
..+.-+|-..+++|+..+..+++++...|+.+
T Consensus 209 ~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 209 QNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999998877654
No 251
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=97.29 E-value=0.12 Score=50.95 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC-CCCCC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 30 RCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG-HDDPV-SVSIGGPVISKFISAFRELATYKELLRSQVEHVLINR 107 (760)
Q Consensus 30 ~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~-~~d~~-~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~p 107 (760)
-+..++.-+++|..++.....+...|.++|...+.. +.... +-.+ |.+|.+++...++|+..+..+...+.+.++.|
T Consensus 23 ~~~d~v~ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkEl-G~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~p 101 (231)
T cd07643 23 LWEDFVSKATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEI-GSALTRMCMRHKSIETKLKQFTSALMDCLVNP 101 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567778888888888888888888999999876621 11111 1123 57899999999999999999999999999999
Q ss_pred HHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 108 LTEFLTVDLHDA----KESRRRFDKSIHAYDQAREKFVSLK 144 (760)
Q Consensus 108 L~~f~~~~l~~~----ke~rk~fek~~~~Yd~al~ky~s~~ 144 (760)
|++=++++.+.+ |+..|.|.+++.+.-.+..-...+.
T Consensus 102 Le~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klq 142 (231)
T cd07643 102 LQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQ 142 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999998888877 6777888888887765555444443
No 252
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.28 E-value=0.00015 Score=80.09 Aligned_cols=98 Identities=20% Similarity=0.426 Sum_probs=71.9
Q ss_pred cceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccc
Q 046849 292 VQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLN 371 (760)
Q Consensus 292 ~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (760)
....|.||+.+-+... +.|+|||||++ +|.+.||+.+++... .+
T Consensus 247 e~~ekSgy~~~~~s~~-k~lkrr~~v~k-~gqi~~y~~~~~~~~----------------------------------~p 290 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRI-KSLKRRYVVFK-NGQISFYRKHNNRDE----------------------------------EP 290 (936)
T ss_pred chhhcccchhcchHHH-HHHHhHheeec-cceEEEEEcCCCccc----------------------------------cc
Confidence 5667899999887555 48999999999 788888887654211 11
Q ss_pred cccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHh
Q 046849 372 CRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASL 428 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~ 428 (760)
...+++..-++.. ...-.+.|.+++...+|+|.++|+.-..+|+..|+..|...
T Consensus 291 ~s~~d~~s~~~~~---~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~ 344 (936)
T KOG0248|consen 291 ASKIDIRSVTKLE---QQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKAT 344 (936)
T ss_pred cCcccccccceee---ccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHHH
Confidence 2233444322221 22345789999999999999999999999999999998543
No 253
>PLN02866 phospholipase D
Probab=97.28 E-value=0.0012 Score=78.12 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=33.1
Q ss_pred CCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 390 ~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
.-+|.|.|.+.+|++.|.|.|...+..|+.+|+.+.
T Consensus 272 ~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 272 PLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred CCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999998774
No 254
>PF13606 Ank_3: Ankyrin repeat
Probab=97.27 E-value=0.00024 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 734 GGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 734 ~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+|+||||+|+..|+ .+++++|++
T Consensus 1 ~G~T~Lh~A~~~g~---~e~v~~Ll~ 23 (30)
T PF13606_consen 1 NGNTPLHLAASNGN---IEIVKYLLE 23 (30)
T ss_pred CCCCHHHHHHHhCC---HHHHHHHHH
Confidence 59999999999999 999999986
No 255
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.26 E-value=0.0033 Score=54.90 Aligned_cols=94 Identities=14% Similarity=0.212 Sum_probs=62.0
Q ss_pred eEEEEEEeeCCCCCCCc-eeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 295 IKQGYLLKRSSNLRGDW-KRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 295 ~k~G~L~K~~~~~~~~W-~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
+.+|=|.+.+.. +.| +.|+|+|-++.++++.++.-... .-.-.+
T Consensus 3 i~~Gel~~~s~~--~g~~q~R~~FLFD~~LI~CKkd~~r~~---------------------------------~~~yKg 47 (109)
T cd01224 3 FLQGEATRQKQN--KGWNSSRVLFLFDHQMVLCKKDLIRRD---------------------------------HLYYKG 47 (109)
T ss_pred eEeeeEEEEecc--cCCcccEEEEEecceEEEEecccccCC---------------------------------cEEEEE
Confidence 568888877632 133 46888888455555443321100 011256
Q ss_pred cccccCceeccCCCCCCC------CceEEEEecC--ceeEEEcCCHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDL------RLCFRIISPV--KTYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~------~~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
.|++..+.|....+..+. ++.|.|+..+ +.|.|.|.|.++...||+||..
T Consensus 48 ri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 48 RIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 778888777764443222 6899999876 5699999999999999999864
No 256
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=97.21 E-value=0.0047 Score=70.76 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCCceEEEEe-cCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIIS-PVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 390 ~~~~~F~i~~-~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
+.+|.|-|.+ ++|.+.|||.+++||+.||.+|+.++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 4689999976 458999999999999999999998763
No 257
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.16 E-value=0.00031 Score=76.21 Aligned_cols=106 Identities=25% Similarity=0.435 Sum_probs=67.8
Q ss_pred CCcceeEEEEEEeeCCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCC
Q 046849 290 GEVQTIKQGYLLKRSSN--LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNE 367 (760)
Q Consensus 290 ~~~~~~k~G~L~K~~~~--~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (760)
+.+.+..||-|..+.|. +.+.|+-|||+|. +..|.|.+..... +.
T Consensus 731 ~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLS-gA~L~~~kg~s~~--------------------------------dS 777 (851)
T KOG3723|consen 731 QDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLS-GAQLLFQKGKSKD--------------------------------DS 777 (851)
T ss_pred CCCCchhcchhhhhccchhhhhhhccceEEec-chhhhcccCCCCC--------------------------------CC
Confidence 34455778988755444 4479999999997 5556553322110 00
Q ss_pred CccccccccccC-ceeccC---CCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhhh
Q 046849 368 DSLNCRTVDLRT-SAIKMD---GEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLNS 431 (760)
Q Consensus 368 ~~~~~~~i~l~~-~~v~~~---~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 431 (760)
. ...|++.. -+|+.. .....-+-.|+|.|.++||.|.|.+++..++|++.|+-+.+.+...
T Consensus 778 ~---~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r 842 (851)
T KOG3723|consen 778 D---DCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKER 842 (851)
T ss_pred C---CCCccHHHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHH
Confidence 0 02344432 112210 1112234679999999999999999999999999999888766544
No 258
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.16 E-value=0.0043 Score=56.46 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 391 LRLCFRIISPVKTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 391 ~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
..++|.|.+++|++-|-|+|.++.+-|+.+|+--+
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999998654
No 259
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=97.06 E-value=0.46 Score=48.63 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDD-PVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d-~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
.+.|.++++.=++.|+.+..-+.+-......++..|..+...... +..-++ ..++..|-.....+...|..+...+..
T Consensus 7 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~gsl-~~a~~~i~~e~e~~a~~H~~~a~~L~~ 85 (236)
T cd07651 7 FDVIQTRIKDSLRTLEELRSFYKERASIEEEYAKRLEKLSRKSLGGSEEGGL-KNSLDTLRLETESMAKSHLKFAKQIRQ 85 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888887777788899999877632211 111122 246677777777888889999999999
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 046849 103 VLINRLTEFLTVDLHDAK 120 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~k 120 (760)
.+..||..|.+..-+..|
T Consensus 86 ~v~~~l~~~~~~~~~~rK 103 (236)
T cd07651 86 DLEEKLAAFASSYTQKRK 103 (236)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999766444433
No 260
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.03 E-value=0.00057 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 734 GGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 734 ~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+|.||||+|+..|+ .+++++|++
T Consensus 1 dG~TpLh~A~~~~~---~~~v~~Ll~ 23 (33)
T PF00023_consen 1 DGNTPLHYAAQRGH---PDIVKLLLK 23 (33)
T ss_dssp TSBBHHHHHHHTTC---HHHHHHHHH
T ss_pred CcccHHHHHHHHHH---HHHHHHHHH
Confidence 59999999999999 999999975
No 261
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.02 E-value=0.0025 Score=72.78 Aligned_cols=98 Identities=21% Similarity=0.406 Sum_probs=62.5
Q ss_pred ceeEEEEEEeeCCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcc
Q 046849 293 QTIKQGYLLKRSSN--LRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSL 370 (760)
Q Consensus 293 ~~~k~G~L~K~~~~--~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (760)
.+.++|||+.-+.+ ....-.+|||||. +..+.||+...... + +
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~-~~~~~~yK~~P~~~--------------------------------~--~ 47 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLE-SRLLAYYKKKPQDN--------------------------------Q--V 47 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEe-cchhhhcccCCccc--------------------------------c--c
Confidence 34579999966543 3345789999998 66777776532100 0 1
Q ss_pred ccccccccCceeccCCCCCCCC-------ceEEEEec---CceeEEEcCCHHHHHHHHHHHHHHHHHh
Q 046849 371 NCRTVDLRTSAIKMDGEDTDLR-------LCFRIISP---VKTYTLQAETEADRMDWTSKITGVIASL 428 (760)
Q Consensus 371 ~~~~i~l~~~~v~~~~~~~~~~-------~~F~i~~~---~~~~~lqA~s~~e~~~Wi~ai~~~i~~~ 428 (760)
|..+..+. .+.++ ++.+|+ |.|.|... .+...|-|-+.+|...||++|+.++...
T Consensus 48 pirs~~id-~~~rV--ed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 48 PIKTLLID-GNCRV--EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred cceeeccC-CCceE--eecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 11111111 12222 112222 78888764 3679999999999999999999999865
No 262
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=96.99 E-value=0.085 Score=53.44 Aligned_cols=188 Identities=12% Similarity=0.158 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 046849 19 SMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRS 98 (760)
Q Consensus 19 ~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~ 98 (760)
.-+++++......+.|+.+.+.|..+.-++++.+..|-+.|..++.. +++..+ ..++..|+...+-++..-..++.
T Consensus 136 krleeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vh--EpQq~A--sEAF~~Fgd~HR~ieK~g~~~~k 211 (429)
T KOG3651|consen 136 KRLEELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVH--EPQQTA--SEAFSSFGDKHRMIEKKGSESAK 211 (429)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc--CcchhH--HHHHHHHHHHHHHHHHhccchhh
Confidence 34567788888889999998888888777766666777766655522 233222 36799999999999998888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhh----HH--------------HHHHHHH
Q 046849 99 QVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDI----VA--------------ELEEDLQ 160 (760)
Q Consensus 99 ~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~----~~--------------e~~~~l~ 160 (760)
++..++.. |+.+++..|..-+-.-|+|-...-+|=+.--|...+. ..+. ++ -.-..-+
T Consensus 212 ~ikpmlsD-L~tYlnkaiPDTrLTikkYlDvKfeYLSYCLKvKEMD---DEE~~f~AlqEPLYRVeTGNYEYRliLRCRQ 287 (429)
T KOG3651|consen 212 PIKPMLSD-LQTYLNKAIPDTRLTIKKYLDVKFEYLSYCLKVKEMD---DEEVEFVALQEPLYRVETGNYEYRLILRCRQ 287 (429)
T ss_pred hhhHHHHH-HHHHHhccCCcchhhhHHhhhhhHHHHHHHHhhhhcc---chhhceeeecCceeEeecCCeeeehhHHHHH
Confidence 88877655 8888888887777666666555555544433322111 1110 00 0111235
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 161 NSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIE 214 (760)
Q Consensus 161 ~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~ 214 (760)
++|..|.+-+-|...+|..+..+.-.++..++-.+......+.+.+++.+.+..
T Consensus 288 eaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~ 341 (429)
T KOG3651|consen 288 EARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKERI 341 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999998887778999999998888888888888887543
No 263
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.99 E-value=0.0011 Score=42.34 Aligned_cols=29 Identities=52% Similarity=0.799 Sum_probs=26.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 046849 695 QGGSLLHLACQCGNLVMLELLIQFGADIN 723 (760)
Q Consensus 695 ~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn 723 (760)
.|.||||+|+..|+.++++.|+++|++++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999998865
No 264
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.94 E-value=0.5 Score=48.38 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC----CCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 25 EELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG----GHDDPVSVSIGGPVISKFISAFRELATYKELLRSQV 100 (760)
Q Consensus 25 ~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~----~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~ 100 (760)
+.+...++.=.+.|+.++.-+.+-......|+..|..+.. ...+.. -++ ..++..|...+..+...|..+...+
T Consensus 8 ~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~-Gtl-~~aw~~~~~e~e~~a~~H~~la~~L 85 (239)
T cd07658 8 EELRRYVKQGGDFCKELATVLQERAELELNYAKGLSKLSGKLSKASKSVS-GTL-SSAWTCVAEEMESEADIHRNLGSAL 85 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CcH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777777766666666777777766541 111111 222 2567888888888889999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 046849 101 EHVLINRLTEFLTVDLHDAKESRRRFDKSIHAY 133 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Y 133 (760)
...+..||..|.++.-+..|+....|+++++..
T Consensus 86 ~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~ 118 (239)
T cd07658 86 TEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLL 118 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876665555555555555544
No 265
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=96.89 E-value=0.52 Score=46.49 Aligned_cols=178 Identities=10% Similarity=0.098 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------hHHHHHHHHHhhC-----CCCCCCccccchhHHHHHHHHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSG--------DSAFADALEAFGG-----GHDDPVSVSIGGPVISKFISAFR 87 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~--------~~~~~~~l~~~~~-----~~~d~~~~~~~~~~l~~f~~~l~ 87 (760)
|.+++.++..++++-..++.+.+-.+++..- ...+..+|..++. +..++. .+ ..+|...++...
T Consensus 3 e~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t--~L-s~Al~~~g~~~e 79 (199)
T cd07626 3 EQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSV--PL-TQAIKHTGQAYE 79 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccch--HH-HHHHHHHHHHHH
Confidence 5566666666666666666655544443322 1344555555442 222222 23 257888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHH
Q 046849 88 ELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFE 167 (760)
Q Consensus 88 el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~ 167 (760)
++...+..-....- .||...++..++.+-..+.-| ..+-.++.|.....+...... -...++.+.++.|.
T Consensus 80 ~Ig~l~~eQa~~D~----~~l~E~L~eY~gll~~~pdi~----~~~k~al~K~kE~~r~~~egk--~~~~e~~ev~~r~d 149 (199)
T cd07626 80 EIGELFAEQPKHDL----IPLLDGLHEYKGLLSTFPDII----GVHKGAVQKVKECERLVDEGK--MSSAELEEVKRRTD 149 (199)
T ss_pred HHHHHHHHhhHhhH----HHHHHHHHHHHhHHHhhhHHH----HHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHH
Confidence 88887665433322 333333333333222222222 111122222211111000000 12335666888899
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 168 KSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS 211 (760)
Q Consensus 168 ~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~ 211 (760)
..+.-.-..|+.++..+..+|-..+..|+..|..||++-.+-++
T Consensus 150 ~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~ 193 (199)
T cd07626 150 VISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLE 193 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988889999998888889999999999999999987655544
No 266
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.86 E-value=0.36 Score=50.16 Aligned_cols=91 Identities=10% Similarity=0.165 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 25 EELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSV-SIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 25 ~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~-~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
+.|-..++.=...|+.+.+-+.+-......++..|..+.....+...+ ++ .+++..+-.....+...+..|...+..
T Consensus 8 ~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak~L~klak~~~~~~e~Gtl-~~~w~~~~~~~E~~a~~H~~l~~~L~~- 85 (261)
T cd07674 8 DVLYHNMKHGQISTKELADFVRERAAIEETYSKSMSKLSKMASNGSPLGTF-APMWEVFRVSSDKLALCHLELMRKLND- 85 (261)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 445566677777788888877777777788888888876443332222 22 256777777778888888888888874
Q ss_pred HHHHHHHHHHhhhH
Q 046849 104 LINRLTEFLTVDLH 117 (760)
Q Consensus 104 ~~~pL~~f~~~~l~ 117 (760)
++.++..|.++.++
T Consensus 86 ~~~~i~~~~~~~~k 99 (261)
T cd07674 86 LIKDINRYGDEQVK 99 (261)
T ss_pred HHHHHHHHHHHHHH
Confidence 44788888766543
No 267
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=96.77 E-value=0.00086 Score=71.76 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=45.7
Q ss_pred ccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 046849 652 DSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQF 718 (760)
Q Consensus 652 t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~ 718 (760)
||||+|+..|+.. .+.+|+-.||||++.| .+|.||+.+|-..||-++++-|++.
T Consensus 169 TpLHvAAk~Gq~~-----------Q~ElL~vYGAD~~a~d--~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 169 TPLHVAAKAGQIL-----------QAELLAVYGADPGAQD--SSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred chhHHHHhccchh-----------hhhHHhhccCCCCCCC--CCCCcHHHHHHhcCchHHHHHHHHH
Confidence 8999999998632 2334466899999999 9999999999999999999888864
No 268
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.72 E-value=0.96 Score=47.05 Aligned_cols=150 Identities=11% Similarity=0.175 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCC-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPV-SVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~-~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
.+.|..+++.-++.|+.+..-+.+-......++..|..+.....+.. .-++ .+++..+-.....+...+..+...+.
T Consensus 7 ~~~L~~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~-~~~w~~i~~~~e~~a~~H~~l~~~L~- 84 (261)
T cd07648 7 FDVLYHNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQASNSSQLGTF-APLWLVLRVSTEKLSELHLQLVQKLQ- 84 (261)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 35667777888888888888777777777888888877653221111 1122 24556666666777778888888886
Q ss_pred HHHHHHHHHHHhhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHH
Q 046849 103 VLINRLTEFLTVDLHDAKESR-----------------RRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSA 165 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~ke~r-----------------k~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~ 165 (760)
.++.+|..|+.+.-+..|..+ ..-+|+..+|+++-..+.++.+... ...++..++..
T Consensus 85 ~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~------s~k~~eK~~~K 158 (261)
T cd07648 85 ELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENA------SPKEIEKAEAK 158 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CHHHHHHHHHH
Confidence 467889888765554444333 2225556666655555444432211 11233344444
Q ss_pred HHHHHHHHHHHHHHhh
Q 046849 166 FEKSRFNLVSALTNIE 181 (760)
Q Consensus 166 f~~asldyv~~i~~l~ 181 (760)
...+.-||-..+..+.
T Consensus 159 ~~ka~~~Y~~~v~~~~ 174 (261)
T cd07648 159 LKKAQDEYKALVEKYN 174 (261)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444455555555554
No 269
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.70 E-value=0.0024 Score=66.34 Aligned_cols=52 Identities=31% Similarity=0.379 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 699 LLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 699 pLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
-|..||+.|.++.|+.|++.|.+||+ +|.-..+||.+|.-.|| ..+|++|++
T Consensus 39 elceacR~GD~d~v~~LVetgvnVN~------vD~fD~spL~lAsLcGH---e~vvklLLe 90 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNVNA------VDRFDSSPLYLASLCGH---EDVVKLLLE 90 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCcch------hhcccccHHHHHHHcCc---HHHHHHHHH
Confidence 48899999999999999999999988 99999999999999999 999999976
No 270
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.65 E-value=0.014 Score=52.54 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=26.8
Q ss_pred CCCceEEEEe------cCceeEEEcCCHHHHHHHHHHHH
Q 046849 390 DLRLCFRIIS------PVKTYTLQAETEADRMDWTSKIT 422 (760)
Q Consensus 390 ~~~~~F~i~~------~~~~~~lqA~s~~e~~~Wi~ai~ 422 (760)
..++.|.|.- ..+.+.|+|+|+.|+..||+||.
T Consensus 81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 3468899862 23569999999999999999984
No 271
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=96.61 E-value=0.82 Score=44.96 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCC---CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 25 EELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHD---DPVSVSIGGPVISKFISAFRELATYKELLRSQVE 101 (760)
Q Consensus 25 ~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~---d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~ 101 (760)
+.+.++++.=+..|+.+.+-+.+-......++..|..+..... .....++ ..+...+......+...+..+...+.
T Consensus 3 ~~l~~~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~~~~t~-~~~w~~~~~e~~~~a~~h~~~a~~l~ 81 (191)
T cd07610 3 ELLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPESGKTSL-GTSWNSLREETESAATVHEELSEKLS 81 (191)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666677777766542111 1000122 35677777777888888999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 102 HVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIE 181 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~ 181 (760)
..+..|+..|.+..=..-+......++....|..+..+..+ +..+........+...+..|....+.-+..++++.
T Consensus 82 ~~i~~~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k----k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 157 (191)
T cd07610 82 QLIREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK----KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE 157 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999987543222444555555555555554444322 11222334445566666666665555555444433
No 272
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.50 E-value=0.00081 Score=76.25 Aligned_cols=92 Identities=18% Similarity=0.365 Sum_probs=68.0
Q ss_pred eEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcccccc
Q 046849 295 IKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRT 374 (760)
Q Consensus 295 ~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (760)
+-.|||+.+=++- .+|+|-|.|.. +-.|++|++..+.. +..+
T Consensus 925 qLsg~Llrkfkns-sgwqkLwvvft-~fcl~fyKS~qD~~------------------------------------~las 966 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNS-SGWQKLWVVFT-NFCLFFYKSHQDSE------------------------------------PLAS 966 (1036)
T ss_pred hhhHHHHHHhhcc-ccceeeeeeec-ceeeEeeccccccc------------------------------------cccc
Confidence 4568888553322 38999999998 67788888765422 1234
Q ss_pred ccccCceeccC--CCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 375 VDLRTSAIKMD--GEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 375 i~l~~~~v~~~--~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
+.|+..++.+. ++...+-|.|.|...+..|+|.|++.--.+.||++|+++
T Consensus 967 lPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 967 LPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred ccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcC
Confidence 45665555443 344567799999999999999999999999999999865
No 273
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0018 Score=69.17 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.++..++.+||..|.+..++-+...|.|++. +|.+.+|+||+|+..|| .+++++|++
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~------~DyD~RTaLHvAAaEG~---v~v~kfl~~ 560 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLET------KDYDDRTALHVAAAEGH---VEVVKFLLN 560 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccc------cccccchhheeecccCc---eeHHHHHHH
Confidence 4567799999999999999999999999988 99999999999999999 999999975
No 274
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.42 E-value=0.01 Score=61.84 Aligned_cols=60 Identities=28% Similarity=0.356 Sum_probs=46.8
Q ss_pred chhhhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCCCCCC
Q 046849 614 TTSIWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSNDPGNC 693 (760)
Q Consensus 614 ~~~L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~~~~~ 693 (760)
...|+.|++.||++.|..|+..| +|. |..|
T Consensus 37 f~elceacR~GD~d~v~~LVetg----vnV--------------------------------------------N~vD-- 66 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETG----VNV--------------------------------------------NAVD-- 66 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhC----CCc--------------------------------------------chhh--
Confidence 45599999999999998888875 443 2223
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADIN 723 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn 723 (760)
....+||.+|+..||.++|++||++||--.
T Consensus 67 ~fD~spL~lAsLcGHe~vvklLLenGAiC~ 96 (516)
T KOG0511|consen 67 RFDSSPLYLASLCGHEDVVKLLLENGAICS 96 (516)
T ss_pred cccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence 567789999999999999999999998643
No 275
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.42 E-value=0.02 Score=50.60 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=32.7
Q ss_pred CCCceEEEEecC--ceeEEEcCCHHHHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPV--KTYTLQAETEADRMDWTSKITGVIAS 427 (760)
Q Consensus 390 ~~~~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~~i~~ 427 (760)
..+++|.|...+ ..|+|.|.|+++++.||++|.-|++.
T Consensus 74 ~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 74 RWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred ceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 356899999876 45999999999999999999988764
No 276
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.36 E-value=1.6 Score=45.49 Aligned_cols=96 Identities=13% Similarity=0.224 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 25 EELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSV-SIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 25 ~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~-~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
+.|-..++.=...|+.+..-+.+-......++..|..+.....+...+ ++ .+++..+-..+..+...+..+..++..
T Consensus 15 ~~L~~r~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~Gt~-~~~~~~~~~e~e~~a~~H~~la~~L~~- 92 (269)
T cd07673 15 DVLYHNMKHGQISTKELSDFIRERATIEEAYSRSMTKLAKSASNYSQLGTF-APVWDVFKTSTEKLANCHLELVRKLQE- 92 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 445556666677777777777776677778888888776432221111 22 245777777778888889999888885
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 046849 104 LINRLTEFLTVDLHDAKES 122 (760)
Q Consensus 104 ~~~pL~~f~~~~l~~~ke~ 122 (760)
++.+|..|.++..+..|..
T Consensus 93 ~~~~l~~~~~~~~k~rK~~ 111 (269)
T cd07673 93 LIKEVQKYGEEQVKSHKKT 111 (269)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 6688999987765544443
No 277
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=96.35 E-value=0.0029 Score=68.69 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=56.5
Q ss_pred CcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 683 RIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGAD--INMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 683 ~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAd--vn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
+|.+.-..+ .+..|.||+|+..|+-++|++||.+|.. +++ .|..|.|+||-|+..++ ..|-.+|++
T Consensus 888 ~gg~ll~~~--~~~~sllh~a~~tg~~eivkyildh~p~elld~------~de~get~lhkaa~~~~---r~vc~~lvd 955 (1004)
T KOG0782|consen 888 NGGSLLIQG--PDHCSLLHYAAKTGNGEIVKYILDHGPSELLDM------ADETGETALHKAACQRN---RAVCQLLVD 955 (1004)
T ss_pred cCCceEeeC--cchhhHHHHHHhcCChHHHHHHHhcCCHHHHHH------HhhhhhHHHHHHHHhcc---hHHHHHHHh
Confidence 455655666 6789999999999999999999999975 344 88999999999999999 888888876
No 278
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.34 E-value=0.66 Score=45.88 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
+|+..+.-+..|-..+.+++...+.+..+...+..+...|.++..|......|.++ .++.++.+......+... ..
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~---i~~~L~kF~~~l~ei~~~-~~ 78 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEM---ISECLDKFGDSLQEMVNY-HM 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHHHHHHHHHHH-HH
Confidence 67888999999999999988888888888889999999999888887666666553 556666666654444333 34
Q ss_pred HHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHH-hhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 103 VLINRLTEFLTVDLHDAK-ESRRRFDKSIHAYDQAREKF-VSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~k-e~rk~fek~~~~Yd~al~ky-~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
.++..++..+..-|..+. +--+.|....+.||.+..+| .++.|......-+ ..++.++. +++
T Consensus 79 ~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk--~~~l~Ea~--------------~~L 142 (200)
T cd07637 79 ILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHK--PHEVEEAT--------------STL 142 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--hHHHHHHH--------------HHH
Confidence 455566666666666653 44557888899999988888 5666632221111 12332222 122
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHH
Q 046849 181 EAKKKYEFLESISAIMDVHLRY-FKLGFDLLSKIEPYVHQVLTYAQ 225 (760)
Q Consensus 181 ~~~k~~e~l~~l~~~~~a~~~f-f~~g~~~~~~~~~~~~~l~~~~~ 225 (760)
..-++ .|....++|+...... .++.++.++.+-.|++....+.+
T Consensus 143 ~~~Rk-~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~ 187 (200)
T cd07637 143 TITRK-CFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQ 187 (200)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 3555555555444433 46667777666666666655554
No 279
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.29 E-value=1.6 Score=44.70 Aligned_cols=160 Identities=12% Similarity=0.222 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-------CCCCCCCccccchhHHHHHHHHHHHHHHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-------GGHDDPVSVSIGGPVISKFISAFRELATYK 93 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~d~~~~~~~~~~l~~f~~~l~el~~~~ 93 (760)
-++.+.+.+|+.+=++.++.|..-..+-......|+..|..+. ...++.-.++. -.++..+-..+.++...+
T Consensus 4 ~Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~-~~s~~~~L~~~~~~a~q~ 82 (252)
T cd07675 4 WDQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTS-CLSFYNILNELNDYAGQR 82 (252)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccH-HHHHHHHHHHHHHHHHHH
Confidence 3566777888888888887777777776666777887776643 11222112221 122333334455556678
Q ss_pred HHHHHHHHHHHHHHHHHHH---------------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChh--
Q 046849 94 ELLRSQVEHVLINRLTEFL---------------------TVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDD-- 150 (760)
Q Consensus 94 ~~l~~~~~~~~~~pL~~f~---------------------~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~-- 150 (760)
+.+..++...++.||..+. ...++.+...|++|+++-.+-+.+..+|..+.......
T Consensus 83 e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~ 162 (252)
T cd07675 83 EVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKS 162 (252)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHH
Confidence 8888888777777776664 22344456677777777777777777777665543221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 151 IVAELEEDLQNSKSAFEKSRFNLVSALTNIE 181 (760)
Q Consensus 151 ~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~ 181 (760)
.+.-+..++.........+-=+|...|+.+.
T Consensus 163 ~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N 193 (252)
T cd07675 163 DVEKAKQQLNLRTHMADESKNEYAAQLQNFN 193 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333444444444445556666665553
No 280
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=96.24 E-value=1.7 Score=44.43 Aligned_cols=88 Identities=11% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------------------HHhhhHHHHHHHHHHHHHHHHH
Q 046849 78 VISKFISAFRELATY---KELLRSQVEHVLINRLTEF---------------------LTVDLHDAKESRRRFDKSIHAY 133 (760)
Q Consensus 78 ~l~~f~~~l~el~~~---~~~l~~~~~~~~~~pL~~f---------------------~~~~l~~~ke~rk~fek~~~~Y 133 (760)
....|...+.++... +..+...+...++.+|..+ +...+.++...|+.|++...+.
T Consensus 63 ~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~ 142 (237)
T cd07657 63 ISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDY 142 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666553 4566666666666665333 3344466778899999999999
Q ss_pred HHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 046849 134 DQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSR 170 (760)
Q Consensus 134 d~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~as 170 (760)
+.+..||-....+.+.. ..++..+|..|+.+.
T Consensus 143 e~Ar~k~e~a~~~~~~~-----~~~~eKak~k~~~~~ 174 (237)
T cd07657 143 KAAKSKFEEAVVKGGRG-----GRKLDKARDKYQKAC 174 (237)
T ss_pred HHHHHHHHHHHhhcccc-----hhhHHHHHHHHHHHH
Confidence 99999987665433211 223445555555443
No 281
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.22 E-value=1.7 Score=44.22 Aligned_cols=165 Identities=14% Similarity=0.182 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCC--C-CCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHD--D-PVSVSIGGPVISKFISAFRELATYKELLRSQ 99 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~--d-~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~ 99 (760)
.++.|...|....+.|+.+..-+.+-......|+..|..+..... . ...-++ -.++..+-.....+...|..|..+
T Consensus 6 a~~~l~~Rl~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~~~~e~g~~-~~~w~~i~~e~e~~a~~H~~la~~ 84 (228)
T cd07650 6 ATEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEPLNKSLLGVF-QNPWLTIESETEFIAASHGELAQR 84 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888777777777888888887653211 1 111011 145667777778888899999999
Q ss_pred HHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 046849 100 VEHVLINRLTEFLTVD--------LHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRF 171 (760)
Q Consensus 100 ~~~~~~~pL~~f~~~~--------l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asl 171 (760)
+...+..||..|.+.. +..+...-+.|+.++...+....+..+... .....+-..|.++|..+...+-
T Consensus 85 l~~~ve~~l~~~~~~~~~~~~l~~~q~l~~~~k~~~e~~k~~~Kl~kk~~k~~~----~~~~~~~~~l~~~~~~We~~~~ 160 (228)
T cd07650 85 IETDVEEPLRDFATSTEFMNTLDDDQNLSNLAKELDESQKKWDKLKKKHSKASS----KAVSAAVSDLEEARQQWDSQAP 160 (228)
T ss_pred HHHHHHHHHHHHHhcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999997552 112334444555554444433333222211 1122235578889999999888
Q ss_pred HHHHHHHHhhhhhhhHHHHHHH
Q 046849 172 NLVSALTNIEAKKKYEFLESIS 193 (760)
Q Consensus 172 dyv~~i~~l~~~k~~e~l~~l~ 193 (760)
.++..++.+... ++.+|..++
T Consensus 161 ~~~e~fQ~leee-Rl~~lk~~l 181 (228)
T cd07650 161 FLFELLQAIDEE-RLNHLKDVL 181 (228)
T ss_pred HHHHHHHHHHHH-HHHHHHHHH
Confidence 888888888754 234444433
No 282
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.14 E-value=2 Score=44.36 Aligned_cols=159 Identities=16% Similarity=0.238 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC-------C--CCCCCccccchhHHHHHHHHHHH---
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG-------G--HDDPVSVSIGGPVISKFISAFRE--- 88 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~-------~--~~d~~~~~~~~~~l~~f~~~l~e--- 88 (760)
-++.+.+.+|...=++.|+.+..-+.+-......|+..|..+.. . ...+. ++ ....|...+.|
T Consensus 4 ~D~~~~l~k~~~~Gi~~~~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk~~~~~~~~~-~t----~~~aw~~~l~e~~~ 78 (253)
T cd07676 4 WDQFDNLEKHTQWGIEVLEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYK-YT----SCRAFLMTLNEMND 78 (253)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-ch----HHHHHHHHHHHHHH
Confidence 46778888999999999999888888877777888888876531 1 11122 22 34555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 046849 89 LATYKELLRSQVEHVLINRLTEFLT---------------------VDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNT 147 (760)
Q Consensus 89 l~~~~~~l~~~~~~~~~~pL~~f~~---------------------~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k 147 (760)
++..|+.+...+...++.||..+.. ..++.+...|+.|+++-.+-+++..+|.......
T Consensus 79 ~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~ 158 (253)
T cd07676 79 YAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADI 158 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4578889999999999998776653 2234455667777777777777777765544321
Q ss_pred C--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046849 148 R--DDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKK 184 (760)
Q Consensus 148 ~--~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k 184 (760)
. +..++-+...+.........+--+|...|+.+...+
T Consensus 159 ~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q 197 (253)
T cd07676 159 NVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQ 197 (253)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 222223444444445555555666666666665443
No 283
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.13 E-value=2 Score=44.23 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCC-------CCCccccchhHHHHH
Q 046849 10 SPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHD-------DPVSVSIGGPVISKF 82 (760)
Q Consensus 10 SP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------d~~~~~~~~~~l~~f 82 (760)
.|.|........+.|..+...+.++...+.++..-..........|+..|..|+..+. +...+......|...
T Consensus 17 p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (246)
T cd07597 17 PPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSL 96 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHH
Confidence 4778888888888888888888888887777777656555556788888888874332 111111111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhc
Q 046849 83 ISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRF--------DKSIHAYDQAREKFVSLKK 145 (760)
Q Consensus 83 ~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~f--------ek~~~~Yd~al~ky~s~~k 145 (760)
+.-+..+......-.......+.++|..|++ -|..++++-.+. .....+++..-.|+.+++-
T Consensus 97 s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d-~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~ 166 (246)
T cd07597 97 SKHFQLLSDLSEDEARAEEDGVLEKLKLQLD-LLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRA 166 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhc
Confidence 3333333333333355667889999999984 466666555544 4555666666666655543
No 284
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.99 E-value=0.0041 Score=67.00 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=40.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHH
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAM 743 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~ 743 (760)
..-.|+||+|+..|...+|..||.+|+|+-+ +|..|+||..++.
T Consensus 428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~------kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 428 YLTSTFLHYAAAQGARKCVKYFLEEGCDPST------KDGAGRTPYSLSA 471 (591)
T ss_pred cccchHHHHHHhcchHHHHHHHHHhcCCchh------cccCCCCcccccc
Confidence 4467999999999999999999999988665 9999999999987
No 285
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.94 E-value=0.093 Score=46.81 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=34.3
Q ss_pred cccccCceeccCCCCCCCCceEEEEec--C---ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISP--V---KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~--~---~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.|.+....+....+.. .++|+|.+. . .+|++||.|.++.+.|+..|+..+.
T Consensus 58 ~ikls~l~l~e~v~gd--~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 58 KLQVSKMGLTEHVEGD--PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ceeeeeeEeEEccCCC--CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 4444444444333332 456777553 3 5899999999999999999987653
No 286
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.92 E-value=0.041 Score=47.92 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=41.3
Q ss_pred cccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHHH
Q 046849 372 CRTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGVI 425 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~i 425 (760)
.+.+.|..-+|....+..+.++.|+|..+. -+..+.|.+.+|..+||..|+..+
T Consensus 55 qGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 55 QGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred eeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 346667666666433344668999999887 678999999999999999998643
No 287
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=95.88 E-value=0.0057 Score=69.76 Aligned_cols=93 Identities=19% Similarity=0.308 Sum_probs=65.6
Q ss_pred cceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCcccCCCCCCCCCccccccccccCCCCCCCCcc
Q 046849 292 VQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGI-KSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSL 370 (760)
Q Consensus 292 ~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (760)
.+++|.|||.|-+.....-.+|||.-++ ...+.||.++.+ .+
T Consensus 85 sp~~~~gwldk~~pqg~~~~qkr~vkf~-~~s~~yf~~~k~py~------------------------------------ 127 (1186)
T KOG1117|consen 85 SPVIKSGWLDKLSPQGEYPFQKRWVKFD-GSSLEYFLSPKDPYS------------------------------------ 127 (1186)
T ss_pred CchhhcchhhccCcCcccccCccceecC-CCCccccCCCCCCCC------------------------------------
Confidence 4589999999998766667889999887 445556654433 22
Q ss_pred ccccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 371 NCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 371 ~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.+.|.+...+.... . ...-|+|++..|+++|.++++.++..|++.++++..
T Consensus 128 -k~~i~va~is~v~~--~--gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 128 -KGPIPVAAISAVRN--F--GDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred -CCceeeehhhhhhh--c--cCceEEEEecceEEEEecCCcccceeeechhhhcch
Confidence 12333333222221 1 124599999999999999999999999999998864
No 288
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.88 E-value=1.8 Score=42.70 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG 64 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~ 64 (760)
+|+.+|.-+..|-..+.+++...+.++.+...|+.+...|.+
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~ 44 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMN 44 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 578888888888888888888877777766666655555543
No 289
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=95.65 E-value=0.83 Score=46.36 Aligned_cols=188 Identities=9% Similarity=0.145 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------hHHHHHHHHHhhCC--CCCCC-ccccchhHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG--------DSAFADALEAFGGG--HDDPV-SVSIGGPVISKF 82 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~--------~~~~~~~l~~~~~~--~~d~~-~~~~~~~~l~~f 82 (760)
=..+...|.+++.+...++++-+.++.+.+...++..- ...+..+|..++.. .+... +..+ ..+|...
T Consensus 33 ~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L-~~Al~~t 111 (237)
T PF10456_consen 33 PLDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPL-TNALKHT 111 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHH-HHHHHHH
Confidence 34567788888888888888888877766665544421 23444555444421 11111 1112 2567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHH
Q 046849 83 ISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNS 162 (760)
Q Consensus 83 ~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~ 162 (760)
|..+.+|......- -... ..||. +.|..|+-.-..|--....+.+++.|+....|-.....+ ...++...
T Consensus 112 g~~y~~Ig~l~~~Q---pk~D-~~pl~----d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~~kl~~e~K~--~~~~~~~v 181 (237)
T PF10456_consen 112 GDTYEEIGDLFAEQ---PKND-LIPLL----DCLKEYRGLLSNFPDIISVHKGALQKVKECEKLSDEGKM--SQQEAEEV 181 (237)
T ss_dssp HHHHHHHHHHHHTS---GGGT-HHHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHCTCHHHHHHTTSS---HHHHHHH
T ss_pred HHHHHHHHHHHHhc---cccc-hHHHH----HHHHHHhhhHhhCccHHHHHHHHHHHHHHHHHHHhccCC--CHHHHHHH
Confidence 88887777754331 1111 12333 345667777778888888888888887555331111101 23455566
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 163 KSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSK 212 (760)
Q Consensus 163 Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~ 212 (760)
++.=...+.-....|+-++..+..+|-..+-.|+..|..||++-.+.+++
T Consensus 182 ~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~ 231 (237)
T PF10456_consen 182 QRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQ 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777788999998888899999999999999999987776654
No 290
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=95.55 E-value=3.5 Score=42.72 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC----CCCC-CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 29 DRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG----GHDD-PVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 29 ~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~----~~~d-~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
++++.=++.|+.+..-+.+-......++..|..+.. ...+ +..-++ ..++..+-.....++..|..+...+...
T Consensus 12 kr~~~G~~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~~~e~gsl-~~aw~~~~~e~e~~a~~H~~l~~~L~~~ 90 (258)
T cd07655 12 KRIEDGHKLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYGTL-ETAWKGLLSEAERLSELHLSIRDKLLND 90 (258)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555544444445566666655431 1111 111122 2456677777777888899999999999
Q ss_pred HHHHHHHHHHh
Q 046849 104 LINRLTEFLTV 114 (760)
Q Consensus 104 ~~~pL~~f~~~ 114 (760)
+..||..|.++
T Consensus 91 v~~~i~~~~~e 101 (258)
T cd07655 91 VVEEVKTWQKE 101 (258)
T ss_pred HHHHHHHHHHH
Confidence 99999888753
No 291
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.49 E-value=3.5 Score=42.24 Aligned_cols=156 Identities=13% Similarity=0.196 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVS-VSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~-~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
.+.+-++++.=++.|+.+.+-+.+-......++..|..+.....+... -++ ..++..|-.....+...|..+..++..
T Consensus 7 ~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLak~~~~~~e~gsl-~~aw~~i~~e~e~~a~~H~~la~~L~~ 85 (239)
T cd07647 7 FDTLLQRLKEGKKMCKELEDFLKQRAKAEEDYGKALLKLSKSAGPGDEIGTL-KSSWDSLRKETENVANAHIQLAQSLRE 85 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677778888888888888777777778888888887643221111 122 245677777777778888888888887
Q ss_pred HHHHHHHHHHHhhhHH---------------------HHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHH
Q 046849 103 VLINRLTEFLTVDLHD---------------------AKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQN 161 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~---------------------~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~ 161 (760)
.+ ..|..|.+...+. +..+|+.|+..-.+.+.+...|...+....+..+.-....+..
T Consensus 86 ~v-~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k 164 (239)
T cd07647 86 EA-EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQ 164 (239)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 64 5577776443322 3344555555555555555555444433223333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 046849 162 SKSAFEKSRFNLVSALTNIE 181 (760)
Q Consensus 162 ~Rk~f~~asldyv~~i~~l~ 181 (760)
++..-..+-=+|-..+..++
T Consensus 165 ~~~~~~~a~~~Y~~~v~~l~ 184 (239)
T cd07647 165 CKTSAEEADSAYKSSIGCLE 184 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555443
No 292
>PF15406 PH_6: Pleckstrin homology domain
Probab=95.37 E-value=0.05 Score=46.94 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=25.1
Q ss_pred eEEEEecCceeEEEcCCHHHHHHHHHHHH
Q 046849 394 CFRIISPVKTYTLQAETEADRMDWTSKIT 422 (760)
Q Consensus 394 ~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~ 422 (760)
-|.+...+...+|+|.|..||+.||.+|.
T Consensus 82 kF~f~~~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 82 KFHFKIKGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred eEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence 36666688999999999999999999886
No 293
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.36 E-value=3.7 Score=41.76 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 26 ELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSV-SIGGPVISKFISAFRELATYKELLRSQVEHVL 104 (760)
Q Consensus 26 ~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~-~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~ 104 (760)
.+...++.=.+.|+.+.+-+.+-......|+..|..+.........+ ++ ..++..|-.....+...|..+...+...+
T Consensus 9 vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~~e~Gtl-~~sw~~~~~e~E~~a~~H~~la~~L~~ev 87 (233)
T cd07649 9 ILLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQEEGTL-GEAWAQVKKSLADEAEVHLKFSSKLQSEV 87 (233)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666665566677777777664322111111 22 35678888888999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 046849 105 INRLTEFLTVDLHDAKESRRRFDKSIHAYD 134 (760)
Q Consensus 105 ~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd 134 (760)
..||..|.+...+..+..-..|++++...-
T Consensus 88 ~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~ 117 (233)
T cd07649 88 EKPLLNFRENFKKDMKKLDHHIADLRKQLA 117 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877777766666666666553
No 294
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=95.22 E-value=2.7 Score=41.58 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG 64 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~ 64 (760)
+.+...+..|+++.|.+++++...+.+..+...+..+-..|..
T Consensus 2 ~~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~ 44 (207)
T cd07635 2 ERIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAH 44 (207)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999888866655555555544444443
No 295
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.16 E-value=0.0023 Score=75.07 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCCccccccccccccchhhhhhcccccCCCCccc-CcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCcccc
Q 046849 648 VVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQ-RIKDSNDPGNCLQGGSLLHLACQCGNLVMLELLI-QFGADINMR 725 (760)
Q Consensus 648 ~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~-~gadvn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL-~~GAdvn~~ 725 (760)
..|.+-||+++..++.-.. ..+++ +|-..+.-+ .+|.-.+|+ |..++.+++-+|+ .+|..|+.
T Consensus 572 ~r~~lllhL~a~~lyawLi-----------e~~~e~~~~~~~eld--~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i- 636 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLI-----------EKVIEWAGSGDLELD--RDGQGVIHF-CAALGYEWAFLPISADGVAIDI- 636 (975)
T ss_pred CcchHHHHHHHHHhHHHHH-----------HHHhcccccCchhhc--ccCCChhhH-hhhcCCceeEEEEeeccccccc-
Confidence 4578999999887653211 11122 133333344 566667777 5566666665554 57888877
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 726 ARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 726 Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
+|..|+||||+|+..|| ..++..|.
T Consensus 637 -----~D~~G~tpL~wAa~~G~---e~l~a~l~ 661 (975)
T KOG0520|consen 637 -----RDRNGWTPLHWAAFRGR---EKLVASLI 661 (975)
T ss_pred -----ccCCCCcccchHhhcCH---HHHHHHHH
Confidence 99999999999999999 77777765
No 296
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.09 E-value=0.16 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.1
Q ss_pred cCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 400 PVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 400 ~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
++|+++|.|-|..|++.|+-+|...
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~E 184 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINTE 184 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHhc
Confidence 4578999999999999999999754
No 297
>PF15408 PH_7: Pleckstrin homology domain
Probab=95.04 E-value=0.012 Score=47.91 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=25.9
Q ss_pred ceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHH
Q 046849 393 LCFRIISPV-KTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 393 ~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
|.|-..+|+ +..-+-|+|.+-|+.||++|+.-
T Consensus 64 ~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 64 FGFLMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred EEEEEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 567677777 45788899999999999999753
No 298
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=94.98 E-value=0.0078 Score=66.12 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=63.9
Q ss_pred EEEEEEeeCCCCCCCceeeEEEEecCce----EEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccc
Q 046849 296 KQGYLLKRSSNLRGDWKRRFFVLNSQGT----LYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLN 371 (760)
Q Consensus 296 k~G~L~K~~~~~~~~W~rR~fvl~~~~~----l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (760)
-.|||+--+.+.-+.||||||+|-.-.. +.-|+.+.. .|
T Consensus 466 hsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekka-------------------------------------ep 508 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKA-------------------------------------EP 508 (1218)
T ss_pred cceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhccc-------------------------------------Ch
Confidence 4699997766655689999999963111 111332222 22
Q ss_pred cccccccCceeccCCCC---CCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhh
Q 046849 372 CRTVDLRTSAIKMDGED---TDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLN 430 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~---~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 430 (760)
.+-|.|...+|....+. ...+.-|.-+-.+-+..|..+++.|+.-|++||-.|......
T Consensus 509 qel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgqsyk 570 (1218)
T KOG3543|consen 509 QELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQSYK 570 (1218)
T ss_pred HHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCCcCC
Confidence 34556666665543221 133455777777789999999999999999999988754443
No 299
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=94.97 E-value=4.1 Score=40.36 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHH-HHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKE-LLRSQV 100 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~-~l~~~~ 100 (760)
++|...|.-|+++.+.|+.++...+.+.. ++..+. .+-..|+.+|+++.-... .-.+..
T Consensus 2 ~~l~~~E~~le~~~k~ik~liK~~k~~i~-------A~k~~~-------------~a~~~Fa~sL~~f~~~~~gd~~~dD 61 (207)
T cd07636 2 ERLKSHEAELDKTNKFIKELIKDGKSLIA-------ALKNLS-------------SAKRKFADSLNEFKFQCIGDAETDD 61 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------------HHHHHHHHHHHHHHhhcCCCccccc
Confidence 46788899999999999999887565444 443333 245666666666552110 001222
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 101 EHVLINRLTEFLTVDLHDAKESR-RRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTN 179 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~r-k~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~ 179 (760)
+-.+..+|..|. ..|.++.+.| .-++.++...-.-|.++. .|.=..+.+.||.|...+-+|...+..
T Consensus 62 e~~I~~~L~kF~-~~L~ei~~~r~~L~~qa~~~l~~~L~~F~-----------kedi~~~Ke~kK~FdK~se~~~~al~k 129 (207)
T cd07636 62 EICIARSLQEFA-AVLRNLEDERTRMIENASEVLITPLEKFR-----------KEQIGAAKEAKKKYDKETEKYCAVLEK 129 (207)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhHhhhhhHHHHHHHH
Confidence 234557777776 3355555444 345555666665555554 223335667889999988888877665
Q ss_pred hh---hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 046849 180 IE---AKKKYEFLESISAIMDV-HLRYFKLGFDLLS 211 (760)
Q Consensus 180 l~---~~k~~e~l~~l~~~~~a-~~~ff~~g~~~~~ 211 (760)
.- .+++-.-|+..-.-+.+ ...|.+-..|..-
T Consensus 130 ~~~ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~ 165 (207)
T cd07636 130 HLNLSSKKKESQLHEADSQVDLVRQHFYEVSLEYVF 165 (207)
T ss_pred HhcCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 23333344444433333 3345555555543
No 300
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=6.6 Score=45.12 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-H
Q 046849 19 SMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELL-R 97 (760)
Q Consensus 19 ~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l-~ 97 (760)
...+.++.++..+.++.+...........+......|...+..++.-..... .+ ...+..|+.....+....+.. .
T Consensus 278 e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~--~l-~~~~~~~~~~~~~~~~~~e~~~~ 354 (503)
T KOG2273|consen 278 EKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETD--EL-SEALSGLAKVIESLSKLLEKLTA 354 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH--HH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 5556666777777777777666555555555555555555555552211110 11 245777777777777766666 5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 046849 98 SQVEHVLINRLTEFLTVDLHDAKESRRRF 126 (760)
Q Consensus 98 ~~~~~~~~~pL~~f~~~~l~~~ke~rk~f 126 (760)
.+....+..++..|+.- +..++..-+..
T Consensus 355 ~~~~~~~~~~l~~~i~~-~~~~k~~~~~r 382 (503)
T KOG2273|consen 355 EKDSKKLAEQLREYIRY-LESVKSLFEQR 382 (503)
T ss_pred hhhHHHhHHHHHHHHHH-HHHHHHHHHHH
Confidence 66566677777777644 44444333333
No 301
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.85 E-value=0.12 Score=43.69 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=25.2
Q ss_pred EEE-EecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 395 FRI-ISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 395 F~i-~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
|.+ .+++++|+|.|.|..|+.+||++|+..
T Consensus 63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 63 FRIHNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 444 357899999999999999999999753
No 302
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=94.70 E-value=0.02 Score=54.37 Aligned_cols=68 Identities=12% Similarity=-0.037 Sum_probs=56.9
Q ss_pred CcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCc-CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 046849 642 NTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRI-KDSNDPGNCLQGGSLLHLACQCGNLVMLELLIQFGA 720 (760)
Q Consensus 642 n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~g-advn~~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GA 720 (760)
|.+.+|..|+|||+.|+..|.. +.+.+++.+| ++|-+.| ..|.+++-+|-..|+.+.|.+|.++-.
T Consensus 4 ~in~rD~fgWTalmcaa~eg~~-----------eavsyllgrg~a~vgv~d--~ssldaaqlaek~g~~~fvh~lfe~~~ 70 (223)
T KOG2384|consen 4 NINARDAFGWTALMCAAMEGSN-----------EAVSYLLGRGVAFVGVTD--ESSLDAAQLAEKGGAQAFVHSLFENDR 70 (223)
T ss_pred CccchhhhcchHHHHHhhhcch-----------hHHHHHhccCcccccccc--cccchHHHHHHhcChHHHHHHHHHHhc
Confidence 3345889999999999998753 3445678999 8999999 999999999999999999999999854
Q ss_pred Cc
Q 046849 721 DI 722 (760)
Q Consensus 721 dv 722 (760)
+-
T Consensus 71 et 72 (223)
T KOG2384|consen 71 ET 72 (223)
T ss_pred cC
Confidence 43
No 303
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=94.41 E-value=7.1 Score=40.29 Aligned_cols=84 Identities=7% Similarity=0.160 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC---C-CC-CCCccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 25 EELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG---G-HD-DPVSVSIGGPVISKFISAFRELATYKELLRSQ 99 (760)
Q Consensus 25 ~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~---~-~~-d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~ 99 (760)
+.+.+|++.=.+.|+.+..-+.+-......++..|..+.. + .+ .+..-++ -.++..|-..+..+...|..+..+
T Consensus 8 ~~~~kr~~~g~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl-~~aw~~i~~etE~ia~~H~~la~~ 86 (258)
T cd07680 8 KRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSL-ERAWGAIMTEADKVSELHQEVKNN 86 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777766666667788888877653 1 11 1211121 234556666666677788888888
Q ss_pred HHHHHHHHHH
Q 046849 100 VEHVLINRLT 109 (760)
Q Consensus 100 ~~~~~~~pL~ 109 (760)
+...+++++.
T Consensus 87 L~~e~~e~~r 96 (258)
T cd07680 87 LLNEDLEKVK 96 (258)
T ss_pred HHHhHHHHHH
Confidence 8888888884
No 304
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=94.39 E-value=0.24 Score=42.10 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCCCCceEEEEecCc-eeEEEcCCHHHHHHHHHHHHH
Q 046849 387 EDTDLRLCFRIISPVK-TYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 387 ~~~~~~~~F~i~~~~~-~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
+-.|+-+.|-|+..+. -|+|.|.+++++++|+..|+.
T Consensus 69 EmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 69 EMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3456778899987664 499999999999999999874
No 305
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=93.97 E-value=5.2 Score=38.68 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 78 VISKFISAFRELATYK-ELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQARE 138 (760)
Q Consensus 78 ~l~~f~~~l~el~~~~-~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ 138 (760)
++..+.....++.... ..++..+...+...+.. ++..++.+...|..||.+..+|.....
T Consensus 62 ~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~-~~~~~k~~~~~~~~yd~~~~k~~~~~~ 122 (194)
T cd07307 62 IQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKE-IKKRRKKLDKARLDYDAAREKLKKLRK 122 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444422 23334444433333332 345566666777777777777765543
No 306
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.87 E-value=7.3 Score=38.45 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
+|+.+|.-+..|-..+++++...+.+..+...+..+- ..|+.+|.++.... .-+.
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~--------------------~~F~~~L~~f~~~~-----~~D~ 57 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAAS--------------------RAFVDGLCDLAHHG-----PKDP 57 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHhccC-----CCCc
Confidence 5788888899999988888877666555544444433 44454444443310 1122
Q ss_pred HHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 103 VLINRLTEFLTVDLHDAKES-RRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~ke~-rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
.+..+|..|. ..|.+.... +.-++.++...-.-|.++. .++=..+.++||.|..++-+|...+.-.
T Consensus 58 ~i~~~l~kFs-~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~-----------k~dl~~vKe~kK~FdK~s~~~d~al~K~ 124 (200)
T cd07639 58 MMAECLEKFS-DGLNHILDSHAELLEATQFSFKQQLQLLV-----------KEDLRGFRDARKEFERGAESLEAALQHN 124 (200)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHhhhHhhcchhHHHHHHHH
Confidence 3555566654 334444333 2334444444433333333 1222345567777777777777655443
No 307
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=93.81 E-value=9 Score=39.26 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 27 LKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVS-VSIGGPVISKFISAFRELATYKELLRSQVEHVLI 105 (760)
Q Consensus 27 l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~-~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~ 105 (760)
+-+.++.=...|+.+.+-+.+-......|+..|..+......... -++ ..++..|-..+..+...|..+..++... +
T Consensus 10 l~~r~~~g~~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~gTl-~~a~~~~~~e~e~~a~~H~~ia~~L~~~-~ 87 (242)
T cd07671 10 LLQRLLDGRKMCKDVEELLKQRAQAEERYGKELVQIARKAGGQTEINTL-KASFDQLKQQIENIGNSHIQLAGMLREE-L 87 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 334444445556666666555555667888888777643221111 122 2455666666666777788888888776 5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 046849 106 NRLTEFLTVDLHDAKESRRRFDKSI 130 (760)
Q Consensus 106 ~pL~~f~~~~l~~~ke~rk~fek~~ 130 (760)
.||..|....-...|..-..|++.+
T Consensus 88 ~~l~~f~~~qke~rK~~e~~~eK~q 112 (242)
T cd07671 88 KSLEEFRERQKEQRKKYEAVMERVQ 112 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788887554443333333333333
No 308
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=93.81 E-value=8.8 Score=39.14 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC----C--CCCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG----H--DDPVSVSIGGPVISKFISAFRELATYKELLR 97 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~----~--~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~ 97 (760)
++.+-.+++.-++.|+.+..-+.+-......++..|..+... . .++...++. .++..+-.....+...+..+.
T Consensus 7 ~~~Ll~rlK~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~-~a~~~il~~~e~lA~~h~~~a 85 (234)
T cd07652 7 LSTLLDRLKQSIASAKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGSFS-NAYHSSLEFHEKLADNGLRFA 85 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666555556666666654311 1 111122221 344444444455555666666
Q ss_pred HHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHHHH--Hhhh-hcCCChhhHH
Q 046849 98 SQVEHVLINRLTEFLTV---------------------DLHDAKESRRRFDKSIHAYDQAREK--FVSL-KKNTRDDIVA 153 (760)
Q Consensus 98 ~~~~~~~~~pL~~f~~~---------------------~l~~~ke~rk~fek~~~~Yd~al~k--y~s~-~k~k~~~~~~ 153 (760)
..+. .+..||..+.++ .+..+..+|++|+..-.+||.+..- +... -..+.+....
T Consensus 86 ~~L~-~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~ 164 (234)
T cd07652 86 KALN-EMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAA 164 (234)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhHH
Confidence 6654 466666655422 2233455666666666666655432 1110 0011111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046849 154 ELEEDLQNSKSAFEKSRFNLVSALTNIEAKKK 185 (760)
Q Consensus 154 e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~ 185 (760)
..++ ++.+.-+.+--||...++..+..+.
T Consensus 165 ~~Ee---~~~~K~~~A~~~Y~~~v~~~n~~q~ 193 (234)
T cd07652 165 QHED---ELLRKVQAADQDYASKVNAAQALRQ 193 (234)
T ss_pred HhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 4445556677788888887776655
No 309
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=93.62 E-value=0.05 Score=63.57 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=63.6
Q ss_pred eeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccc
Q 046849 294 TIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCR 373 (760)
Q Consensus 294 ~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (760)
.-.+|||+|... ..++|.+|||+|. +|.+.||+........+ .+
T Consensus 77 ~~~~g~l~k~~n-~~~~~~~r~f~l~-~g~ls~~~~~~~~~~~~----------------------------------~~ 120 (799)
T KOG1737|consen 77 ASLEGILLKWRN-YSKGPSSRWFVLS-GGLLSYYFDNSFSKTTC----------------------------------GG 120 (799)
T ss_pred ccccceeecccc-ccCCcccceEEec-CcceeeeccCCccccCC----------------------------------CC
Confidence 345899999975 4458999999999 99999998765432211 22
Q ss_pred cccccCceeccCCCCCCCCceEEEEe-cCceeEEEcCCHHHHHHHHHHHHHHHHHhhhh
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIIS-PVKTYTLQAETEADRMDWTSKITGVIASLLNS 431 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~-~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 431 (760)
.+.+.+..+.. .++ .-+.+.. ...+|+..+.+..++..|+.+++.+-...+..
T Consensus 121 ~~~~~~a~i~~----~~~-~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (799)
T KOG1737|consen 121 GINLVTAWIQN----GER-MDICSVDGSCQIYLVELSKKLQRQGWLHALELAPLIAVEQ 174 (799)
T ss_pred ccccccccccc----CCC-cccchhhcccchhhhhhhHHHhhcchhhhhhhccchhhhc
Confidence 34444444332 111 1122221 24679999999999999999998875444443
No 310
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.46 E-value=0.63 Score=42.63 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=30.7
Q ss_pred CceEEEEecC--ceeEEEcCCHHHHHHHHHHHHHHHHH
Q 046849 392 RLCFRIISPV--KTYTLQAETEADRMDWTSKITGVIAS 427 (760)
Q Consensus 392 ~~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~~i~~ 427 (760)
...|+|.+.+ .+|+|||.|.+..+.|+..|+..+..
T Consensus 80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 5679998865 56999999999999999999887643
No 311
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=93.40 E-value=11 Score=38.90 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC----CC-CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 29 DRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG----HD-DPVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 29 ~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
+.++.=.+.|+.+..-+.+-......|+..|..+... +. .+..=++ ..++..|-.-...+...|..+..++..-
T Consensus 12 kR~~dG~~~C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g~eyGTL-~~sw~~~~~e~E~ia~~H~~l~~~L~~E 90 (258)
T cd07681 12 KRIEDGYRLCNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKGPQYGTL-EKAWHAFLTAAERLSEIHLELRENLVGE 90 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcccccChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666556667888888776531 11 1111122 3567778778888888899998888888
Q ss_pred HHHHHHHHHHh
Q 046849 104 LINRLTEFLTV 114 (760)
Q Consensus 104 ~~~pL~~f~~~ 114 (760)
+.+|+..+-++
T Consensus 91 ~~e~ir~~QKe 101 (258)
T cd07681 91 DSEKVRAWQKE 101 (258)
T ss_pred HHHHHHHHHHH
Confidence 88998774433
No 312
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.21 E-value=9.6 Score=37.78 Aligned_cols=115 Identities=10% Similarity=0.163 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVE 101 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~ 101 (760)
.+|+..+.-++.|-..+++++...+....+...+..+-..|.++..+-.....+.+ ..+..++.+......+... .
T Consensus 2 ~~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~---~i~~~l~kF~~~l~el~~~-~ 77 (200)
T cd07603 2 ASLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDS---LVQNCLNKFIQALQEMNNF-H 77 (200)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH---HHHHHHHHHHHHHHHHHHH-H
Confidence 36788889999999999998888777666666666655555543322211111221 2234444444433332111 2
Q ss_pred HHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 046849 102 HVLINRLTEFLTVDLHDAK-ESRRRFDKSIHAYDQAREKF 140 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~k-e~rk~fek~~~~Yd~al~ky 140 (760)
..++..++..+..-|..+. +--+.|....+.||.+..+|
T Consensus 78 ~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~y 117 (200)
T cd07603 78 TILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDL 117 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2333334444444443332 33334555555555555555
No 313
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=93.17 E-value=9.3 Score=37.53 Aligned_cols=184 Identities=15% Similarity=0.171 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------hHHHHHHHHHhhCC-CCCCC--ccccchhHHHHHHHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG--------DSAFADALEAFGGG-HDDPV--SVSIGGPVISKFISA 85 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~--------~~~~~~~l~~~~~~-~~d~~--~~~~~~~~l~~f~~~ 85 (760)
+...|.+++.+...++++-..++.+.+..+++..- -...-.+|..++.. ..|+. ...+ ..++...|.+
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L-~~Ai~~tg~~ 85 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDL-NDAITEAGKT 85 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHH-HHHHHHHHHH
Confidence 45778888988888888888888877665655432 12333444443321 11211 1112 2467777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHH
Q 046849 86 FRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSA 165 (760)
Q Consensus 86 l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~ 165 (760)
+.+|...+..--.+.-.-+++-|..+. ..| -.|=-+-..+-.++.|.-...|...... -...+....++.
T Consensus 86 y~~IG~~faeQpk~Dl~pl~d~L~~Y~-G~L-------~~fPDIi~v~KgA~~KvkE~~k~~~egk--m~~~~~~~v~~R 155 (210)
T cd07668 86 YEEIASLVAEQPKKDLHFLMETNHEYK-GFL-------GCFPDIIGAHKGAIEKVKESDKLVATSK--ITLQDKQNMVKR 155 (210)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-Ccc-------ccCccHHHHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHhh
Confidence 877777655432222222233222221 211 1222222223233333211111100000 012233345555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 166 FEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS 211 (760)
Q Consensus 166 f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~ 211 (760)
-.-.++-....|+-++..+..+|-..|-.|+..|..||++-.+.++
T Consensus 156 ~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~ 201 (210)
T cd07668 156 VSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLR 201 (210)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667777888888888888999999999999999987655544
No 314
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.88 E-value=11 Score=37.65 Aligned_cols=125 Identities=10% Similarity=0.113 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
-|+.++.-+..|-+.+++++...+.++. +...+. .+-..|+.+|+++..+.--+. .-+.
T Consensus 3 ~l~~~E~d~~~L~~~~~kL~K~c~~~~~-------a~~~~~-------------~A~~~F~~~L~ef~~~~f~~~-~dDe 61 (215)
T cd07601 3 LLNVFEEDALQLSSYMNQLLQACKRVYD-------AQNELK-------------SATQALSKKLGEYEKQKFELG-RDDE 61 (215)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------------HHHHHHHHHHHHHHhhccCCC-CCcH
Confidence 3677788888888888887777565544 444333 345667777777765422222 2344
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 103 VLINRLTEFLTVDLHDAKESRRRF-DKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~ke~rk~f-ek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
.++.+|.+|. ..|.++-+.|... +.++...-.-|.++. .++=.++.+.||.|..++-+|...+.-.
T Consensus 62 ~~~~~l~kFs-~~l~El~~~~~~L~~q~~~~l~~pL~~F~-----------k~Dl~~vKe~kK~FdK~s~~~d~al~K~ 128 (215)
T cd07601 62 ILVSTLKQFS-KVVDELSTMHSTLSSQLADTVLHPISQFM-----------ESDLAEIMTLKELFKAASNDHDGVLSKY 128 (215)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5556777775 3456655554443 222222222222222 2333456688899999998888755544
No 315
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=92.81 E-value=11 Score=37.15 Aligned_cols=184 Identities=11% Similarity=0.149 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------hHHHHHHHHHhhCCC-CCCCc--cccchhHHHHHHHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG--------DSAFADALEAFGGGH-DDPVS--VSIGGPVISKFISA 85 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~--------~~~~~~~l~~~~~~~-~d~~~--~~~~~~~l~~f~~~ 85 (760)
+...|.+|+.+...++++-..++.+.+..+++..- ....-.+|..++..+ .|+.. ..+ ..++...|.+
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L-~~Av~~tG~~ 85 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEAL-NNAISHTGRT 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHH-HHHHHHHHHH
Confidence 56788899999999999888888877766655432 133344444443211 12211 112 2467777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHH
Q 046849 86 FRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSA 165 (760)
Q Consensus 86 l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~ 165 (760)
+.+|...+..--.+.-.-+++-|. .|+-.=-.|=-+...+-.|+.|.-...|-..... -...+....++.
T Consensus 86 y~~IG~~faeQpk~D~~pl~d~L~--------~Y~GlL~~fPDii~v~K~A~~KvkE~~k~~~e~K--m~~~~~~~v~~R 155 (207)
T cd07669 86 YEAVGEMFAEQPKNDLFQMLDTLS--------LYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGR--MDQDEADGIRKR 155 (207)
T ss_pred HHHHHHHHHhcchhhhhHHHHHHH--------HHhCcccCCccHHHHHHHHHHHHHHHHHhhHHhh--hhhhHHHHHHhh
Confidence 777777654432221122222222 2222222222233333333333221111100000 011123334444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 166 FEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS 211 (760)
Q Consensus 166 f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~ 211 (760)
=.-.++-....|+-++..+..+|-..|-.|++.|..||++-.+.++
T Consensus 156 ~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle 201 (207)
T cd07669 156 CRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLE 201 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666667888888888889999999999999999987555443
No 316
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.93 E-value=0.16 Score=58.99 Aligned_cols=99 Identities=16% Similarity=0.037 Sum_probs=58.3
Q ss_pred ccchh--hhHHHHhcCHHHHHHHHHhcCCcccCcccCCCCCCccccccccccccchhhhhhcccccCCCCcccCcCCCCC
Q 046849 612 SRTTS--IWEAVKTQNLQEVYRLIVTSDANIINTTFDDVVGVDSYHHVDNTQYSEIDFHKVKKEENNGPAGCQRIKDSND 689 (760)
Q Consensus 612 ~~~~~--L~~A~~~~~~~~v~~ll~~g~~d~~n~~~~d~~g~t~Lh~A~~~g~~~~~~~~~~~~~~~~~~ll~~gadvn~ 689 (760)
+.+++ |+.|+.+.+.+.+..|+..+ +.. + .||-+|+..|....+...+. .......+-..+...-.
T Consensus 59 d~lGr~al~iai~nenle~~eLLl~~~----~~~--g-----dALL~aI~~~~v~~VE~ll~-~~~~~~~~~~~~d~~~~ 126 (822)
T KOG3609|consen 59 DPLGRLALHIAIDNENLELQELLLDTS----SEE--G-----DALLLAIAVGSVPLVELLLV-HFVDAPYLERSGDANSP 126 (822)
T ss_pred ChHhhhceecccccccHHHHHHHhcCc----ccc--c-----hHHHHHHHHHHHHHHHHHHh-cccccchhccccccCcc
Confidence 44555 88888888876666666553 221 2 35666766665444432111 11000000001111111
Q ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 046849 690 PGNCLQGGSLLHLACQCGNLVMLELLIQFGADINM 724 (760)
Q Consensus 690 ~~~~~~G~TpLh~Aa~~g~~~~v~lLL~~GAdvn~ 724 (760)
.- .-+.|||.+||..++.+|+++||+.|+.|-.
T Consensus 127 ~f--t~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 127 HF--TPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred cC--CCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 11 4589999999999999999999999999876
No 317
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=91.72 E-value=17 Score=37.16 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC-CCCC-CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 28 KDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG-HDDP-VSVSIGGPVISKFISAFRELATYKELLRSQVEHVLI 105 (760)
Q Consensus 28 ~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~-~~d~-~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~ 105 (760)
.+.++.=.+.|+.+..-+.+-......|+..|..+..- .... ..-++ ..++..|-.-+..+...|..+..++... .
T Consensus 11 ~~r~~~g~~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E~GTl-~~sw~~~~~E~e~~a~~H~~la~~L~~~-~ 88 (240)
T cd07672 11 IQHLNDGRKNCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTEINTL-KRSLDVFKQQIDNVGQSHIQLAQTLRDE-A 88 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 33444444555555555555555567788888776521 1111 11122 2567777777778888889998888875 4
Q ss_pred HHHHHHHHhhhH
Q 046849 106 NRLTEFLTVDLH 117 (760)
Q Consensus 106 ~pL~~f~~~~l~ 117 (760)
.||..|....-.
T Consensus 89 ~~~~~f~~~qk~ 100 (240)
T cd07672 89 KKMEDFRERQKL 100 (240)
T ss_pred HHHHHHHHHHHH
Confidence 588888644433
No 318
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=91.33 E-value=0.23 Score=30.88 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 734 GGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 734 ~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
.|.||||+|+..|+ .+++++|++
T Consensus 1 ~~~~~l~~~~~~~~---~~~~~~ll~ 23 (30)
T smart00248 1 DGRTPLHLAAENGN---LEVVKLLLD 23 (30)
T ss_pred CCCCHHHHHHHcCC---HHHHHHHHH
Confidence 48999999999999 999998864
No 319
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.17 E-value=1.3 Score=39.60 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=27.7
Q ss_pred CCceEEEEecC----ceeEEEcCCHHHHHHHHHHHH
Q 046849 391 LRLCFRIISPV----KTYTLQAETEADRMDWTSKIT 422 (760)
Q Consensus 391 ~~~~F~i~~~~----~~~~lqA~s~~e~~~Wi~ai~ 422 (760)
...||.|+... +++.|-|+|.++++.|+..|+
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~ 113 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLR 113 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHh
Confidence 35799999765 479999999999999999886
No 320
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=91.12 E-value=18 Score=36.22 Aligned_cols=173 Identities=12% Similarity=0.152 Sum_probs=89.9
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchH--------HHHHHHHHhhCCCC------CCCccc
Q 046849 11 PMF---QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDS--------AFADALEAFGGGHD------DPVSVS 73 (760)
Q Consensus 11 P~F---Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~------d~~~~~ 73 (760)
|+| +..|..+|.++..+...+.++++.=+.+..+++.+..+.. .+..+|..++.... ..+.
T Consensus 23 ~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~~r~A-- 100 (218)
T cd07663 23 EFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVEDRVA-- 100 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 556 4567788899999999999999988888877777554432 34444443331100 0000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 046849 74 IGGPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLT-----VDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR 148 (760)
Q Consensus 74 ~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~-----~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~ 148 (760)
..-..+|++.|+. ...++..+...+...+.-|.. ..|...+-..+....+...+..+..+|-.+++..+
T Consensus 101 --~~d~~~L~e~L~~----Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~~~~ea~~~Fe~IS~~~k 174 (218)
T cd07663 101 --SDQDLKLTELLRY----YMLNIEAAKDLLYRRARALADYENSNKALDKARLKSKDVKQAEAHQQECCQKFEKLSESAK 174 (218)
T ss_pred --HhHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112334444433 233334444555554444432 22333333455555566666667777766766433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 149 DDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLL 210 (760)
Q Consensus 149 ~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~ 210 (760)
.+..+ ....|. .+++... +++++..+..-..+..+++.....+
T Consensus 175 ~El~r-----F~~~Rv-------------~~Fk~~l-ve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 175 QELIS-----FKRRRV-------------AAFRKNL-IEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHH-----HHHHHH-------------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32211 111221 1111111 3566777777777777777666543
No 321
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=90.94 E-value=1.9 Score=37.77 Aligned_cols=40 Identities=15% Similarity=0.367 Sum_probs=34.4
Q ss_pred CCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 387 EDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 387 ~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
++.+.++.|.|.|..+...|.|+|..+.+.|++.|+.-+.
T Consensus 65 e~~~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 65 EDGEERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred cCCceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 3345778999999999999999999999999999976553
No 322
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=89.75 E-value=23 Score=35.29 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 046849 20 MEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALE 60 (760)
Q Consensus 20 ~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~ 60 (760)
++.+.+.++..++.+.+.++.++..+..+..+...+.....
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 34556666666666666666666666665555555554444
No 323
>smart00721 BAR BAR domain.
Probab=88.76 E-value=29 Score=35.14 Aligned_cols=120 Identities=14% Similarity=0.079 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hchHHHHHHHHHhhCCCC---CC--CccccchhHHHHHHHHHHHHHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVAC---SGDSAFADALEAFGGGHD---DP--VSVSIGGPVISKFISAFRELATY 92 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~---~~~~~~~~~l~~~~~~~~---d~--~~~~~~~~~l~~f~~~l~el~~~ 92 (760)
+++.+.++..++.+-+.+++++..+..+. .+..........|..... ++ ....++ ....++.++..++..
T Consensus 26 D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 103 (239)
T smart00721 26 DEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLG--ADSSYGKALDKLGEA 103 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccC--chhHHHHHHHHHHHH
Confidence 56677788888888888888777766665 333333333333332211 11 112221 233456666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSL 143 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~ 143 (760)
...+..-.... ..-...|+..-+.-+...=+.+.+...+++..+.-|-+.
T Consensus 104 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~ 153 (239)
T smart00721 104 LKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSA 153 (239)
T ss_pred HHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Confidence 44443222222 333344444433334344455555566666655555443
No 324
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=88.52 E-value=29 Score=34.89 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046849 118 DAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKK 185 (760)
Q Consensus 118 ~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~ 185 (760)
++..+|+.|+..-..+.++..||-..++.+..+.++| ..+.+++|- +..==+|+..|+..+..++
T Consensus 132 eveK~Kk~Y~~~c~~~e~AR~K~ekas~~K~~~K~~E--Ky~~m~~KL-~~~hN~YlL~I~~An~~kd 196 (237)
T cd07685 132 DIEKLKSQYRSLAKDSAQAKRKYQEASKDKDRDKAKE--KYVKSLWKL-YALHNEYVLAVRAAQLHHQ 196 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH--HHHHHHHHH-HhhhhHHHHHHHHHHHHHH
Confidence 4667888888888888888888877665543333221 122233332 2233588888888776555
No 325
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=88.23 E-value=46 Score=36.83 Aligned_cols=51 Identities=10% Similarity=0.209 Sum_probs=36.5
Q ss_pred ccccccCceeccCCCCCCCCceEEEEecCc-eeEEEcCCHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIISPVK-TYTLQAETEADRMDWTSKITG 423 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~-~~~lqA~s~~e~~~Wi~ai~~ 423 (760)
+++.+....|....+....+..|+|..+.- .+...++.+.|..+|+++++.
T Consensus 353 gKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 353 GKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred cccccceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 355555555555334445567799987763 367889999999999999985
No 326
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=40 Score=35.49 Aligned_cols=136 Identities=12% Similarity=0.197 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCh------
Q 046849 76 GPVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRD------ 149 (760)
Q Consensus 76 ~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~------ 149 (760)
|..+...++++.--...+.-+...+ ..+.+.+.-|+...|..-...-.+-++++.+|..+|.=--..+-.-+|
T Consensus 106 gkmm~atgkal~fssqqrla~r~pl-~r~~~ev~vF~~RAI~Dt~qTi~~meq~RTEYRgaLlWMK~~SqELDPdt~k~m 184 (436)
T KOG3891|consen 106 GKMMIATGKALCFSSQQRLALRIPL-SRFYQEVSVFRERAISDTSQTINRMEQCRTEYRGALLWMKDVSQELDPDTDKQM 184 (436)
T ss_pred hhHHHHHhHHhhhhHHHHHHHhhhH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcchhhHH
Confidence 3467777777754333333333333 344556777888888888888899999999999988765555544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 046849 150 DIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLES-ISAIMDVHLRYFKLGFDLLSKI 213 (760)
Q Consensus 150 ~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~-l~~~~~a~~~ff~~g~~~~~~~ 213 (760)
++-+++..++..++++|..-.+|.+.++..+-..+. -++.+ |..|....+.|+++..-.|+.+
T Consensus 185 eKFRkaQt~Vr~aK~nfDklkmD~~QKVDLL~AsRc-NllSh~Lt~YqteL~~f~~Kta~tf~ti 248 (436)
T KOG3891|consen 185 EKFRKAQTQVRSAKENFDKLKMDVCQKVDLLGASRC-NLLSHVLTTYQTELLEFWSKTARTFETI 248 (436)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHhHhhHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999988876554 34333 3344444555665554444433
No 327
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.55 E-value=80 Score=38.81 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC----------CCCCCCccccchhHHHHHHH
Q 046849 15 KQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG----------GHDDPVSVSIGGPVISKFIS 84 (760)
Q Consensus 15 a~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~d~~~~~~~~~~l~~f~~ 84 (760)
+.++.++++....++|-+.+.+.+..+.++|.++-.++..--+++..... ...++.... ...+..-++
T Consensus 1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~a--E~~~~~a~q 1619 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAA--EKLATSATQ 1619 (1758)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45667888899999999999999999999988877665544444433210 011111001 123445555
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 046849 85 AFRELATYKELLRSQVE--HVLINRLTEFLTVDLHDAKESRRRFDKSIHAYD 134 (760)
Q Consensus 85 ~l~el~~~~~~l~~~~~--~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd 134 (760)
-+.+|+...+.|..... ..--+.++.-.......+.++++.++..++.|.
T Consensus 1620 ~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~ 1671 (1758)
T KOG0994|consen 1620 QLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYE 1671 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665555422211 111123344444444555667777775555443
No 328
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.01 E-value=33 Score=33.74 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--------hHHHHHHHHHhhCC-CCCCC--ccccchhHHHHHHHH
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG--------DSAFADALEAFGGG-HDDPV--SVSIGGPVISKFISA 85 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~--------~~~~~~~l~~~~~~-~~d~~--~~~~~~~~l~~f~~~ 85 (760)
+...|.+|+.+...++++-..++.+.+..+++..- ....-.+|..++.. ..|+. +..+ ..++...+.+
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L-~~Av~~tg~~ 85 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGL-NQAIAFTGEA 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHH-HHHHHHHHHH
Confidence 45678888888888888888888776665554422 12333334433321 11211 1122 2456777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHH
Q 046849 86 FRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSA 165 (760)
Q Consensus 86 l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~ 165 (760)
+.+|......--.+.-.-+++-| ..|+-.=-.|=-+-..+-.++.|.-.-.|......+ ...+....++.
T Consensus 86 y~~IG~~faeQpk~Dl~Pl~d~L--------~~Y~G~L~~fPDii~v~KgA~~KvKE~~k~~~egkm--~~~~~~~v~~R 155 (207)
T cd07670 86 YEAIGELFAEQPRQDLDPVMDLL--------ALYQGHLANFPDIIHVQKGALTKVKESKKHVEEGKM--ELQKADGIQDR 155 (207)
T ss_pred HHHHHHHHHhcchhhhHHHHHHH--------HHHhCccccCCchHHHhHHHHHHHHHHHHHHHhhcc--chhhHHHHHHH
Confidence 77777765443222222222222 222222222222333333333332111110000000 01122233443
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 166 FEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLL 210 (760)
Q Consensus 166 f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~ 210 (760)
-.-.|+-....|+-.+..+..+|=..|-.|+..|..||+.-..-+
T Consensus 156 ~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl 200 (207)
T cd07670 156 CNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKL 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556777777777778888889999999999997654433
No 329
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.95 E-value=39 Score=34.58 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---------------------hhhHHHHHHHHHHHHHHHHH
Q 046849 78 VISKFISAFRELA---TYKELLRSQVEHVLINRLTEFLT---------------------VDLHDAKESRRRFDKSIHAY 133 (760)
Q Consensus 78 ~l~~f~~~l~el~---~~~~~l~~~~~~~~~~pL~~f~~---------------------~~l~~~ke~rk~fek~~~~Y 133 (760)
...-|...+.+.. ..+..+...+...++.+|..+.+ ..+.++...+|.|+++..+.
T Consensus 68 ~~~~W~~lL~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea 147 (241)
T cd07656 68 PVNCWNTLLVQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAES 147 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555444 44556666666656665544432 23344567778888888777
Q ss_pred HHHHHHHhhh
Q 046849 134 DQAREKFVSL 143 (760)
Q Consensus 134 d~al~ky~s~ 143 (760)
..|..||..+
T Consensus 148 ~~A~~K~~~a 157 (241)
T cd07656 148 KSAERKLKEA 157 (241)
T ss_pred HHHHHHHHHH
Confidence 7777777544
No 330
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=86.89 E-value=0.81 Score=52.98 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhhhh
Q 046849 389 TDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLNSD 432 (760)
Q Consensus 389 ~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~ 432 (760)
-.-++||.|....+..+..|-+..+.+.|+..++.+|..+..+.
T Consensus 808 ~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~ 851 (1036)
T KOG3531|consen 808 WSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKKS 851 (1036)
T ss_pred ccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccccC
Confidence 35679999999999999999999999999999999997666653
No 331
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=86.05 E-value=51 Score=35.08 Aligned_cols=146 Identities=12% Similarity=0.240 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhhhhchHHHHHHHHHhh----CCCC-CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 35 YKGCKKFTEALGVACSGDSAFADALEAFG----GGHD-DPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLINRLT 109 (760)
Q Consensus 35 ~k~~k~~~~~~~~~~~~~~~~~~~l~~~~----~~~~-d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~ 109 (760)
.+.|..+++.+.+--.....|+..|.... ...+ .++ |--...+-..|-.....+...+..+-..+.+.+.+.+.
T Consensus 27 ~rlc~Dl~~~~qERA~IEk~YaqqL~~wakkWr~lvekgpq-yGt~e~aW~~~~teaerlS~lH~evKd~L~nd~~e~ik 105 (472)
T KOG2856|consen 27 HRLCNDLMNCSQERARIEKAYAQQLTDWAKKWRQLVEKGPQ-YGTVEKAWNAFMTEAERLSELHLEVKDNLINDDVEKIK 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455555554444444556666665432 1111 111 11011234445444455556666666666666666666
Q ss_pred HHHHhh--------hHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcCC----------------ChhhHHHHHHH
Q 046849 110 EFLTVD--------LHDAKESRRRFDKSIHAYD-------QAREKFVSLKKNT----------------RDDIVAELEED 158 (760)
Q Consensus 110 ~f~~~~--------l~~~ke~rk~fek~~~~Yd-------~al~ky~s~~k~k----------------~~~~~~e~~~~ 158 (760)
.+.++. +++.|++-.-|+|+|+-+- ++...|.+.-|.. .|+.++-..+.
T Consensus 106 twqK~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdr 185 (472)
T KOG2856|consen 106 TWQKEAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDR 185 (472)
T ss_pred HHHhhhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHH
Confidence 665543 3455566667777775443 3333343332211 13444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046849 159 LQNSKSAFEKSRFNLVSALTNIE 181 (760)
Q Consensus 159 l~~~Rk~f~~asldyv~~i~~l~ 181 (760)
+..++..-+..--+|-..|.+|.
T Consensus 186 veK~k~evqktkekYektl~el~ 208 (472)
T KOG2856|consen 186 VEKCKQEVQKTKEKYEKTLAELN 208 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555666554
No 332
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=85.88 E-value=39 Score=33.56 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCChhhHHHH
Q 046849 77 PVISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRR-RFDKSIHAYDQAREKFVSLKKNTRDDIVAEL 155 (760)
Q Consensus 77 ~~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk-~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~ 155 (760)
.+-..|+..|.++...+--+.. -+..+.++|++|.+. |.+..+.|. -++.++...-.-+.+|. .|+
T Consensus 37 ~a~~~~~~~l~~~~~~~f~~~~-dDe~i~~~L~kFs~~-L~El~~~~~~L~~q~~~sl~~pL~~F~-----------ked 103 (215)
T cd07631 37 AATHLTSKLLKEYEKQRFPLGG-DDEVMSSTLQQFSKV-IDELSSCHAVLSTQLADAMMFPITQFK-----------ERD 103 (215)
T ss_pred HHHHHHHHHHHHHHHhcCCcCC-CcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 4567888888888765555444 344588899999744 565554443 45555565555555544 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhHHH
Q 046849 156 EEDLQNSKSAFEKSRFNLVSALTNI---EAKKKYEFL 189 (760)
Q Consensus 156 ~~~l~~~Rk~f~~asldyv~~i~~l---~~~k~~e~l 189 (760)
=.+..++|+.|..++-+|...+... .-+++-+.+
T Consensus 104 L~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~ 140 (215)
T cd07631 104 LKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKV 140 (215)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHH
Confidence 3456689999999999998777654 344555544
No 333
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=84.85 E-value=0.33 Score=54.74 Aligned_cols=105 Identities=10% Similarity=-0.116 Sum_probs=66.3
Q ss_pred hhhcCCCCcceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCC
Q 046849 284 MRSSATGEVQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSS 363 (760)
Q Consensus 284 ~~~~~~~~~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (760)
+...+...+.+.+-|||.|+...++ .|++|||++. ++.+.||.++-+.+.+++-.
T Consensus 249 ~ekSgy~~~~~s~~k~lkrr~~v~k-~gqi~~y~~~-~~~~~~p~s~~d~~s~~~~~----------------------- 303 (936)
T KOG0248|consen 249 MEKSGYWTQLTSRIKSLKRRYVVFK-NGQISFYRKH-NNRDEEPASKIDIRSVTKLE----------------------- 303 (936)
T ss_pred hhcccchhcchHHHHHHHhHheeec-cceEEEEEcC-CCccccccCcccccccceee-----------------------
Confidence 3344455566788899999976665 9999999998 77788888776655442100
Q ss_pred CCCCCccccccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhh
Q 046849 364 SFNEDSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLN 430 (760)
Q Consensus 364 ~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 430 (760)
-..|.+..-.......+.|+ ..++.+-++...-..+||.+..........
T Consensus 304 -------------~~~~s~~fqli~~t~~~~~~----~~s~~lt~dw~~iL~~~iKv~~~~~~a~~~ 353 (936)
T KOG0248|consen 304 -------------QQGAAYAFQLITSTDKMNFM----TESERTTHDWVTILSAAIKATTLREMASRV 353 (936)
T ss_pred -------------ccchhHHhhhhhhceeEEEe----ccChhhhhhhHHHHHHHHHHHhccchhhhc
Confidence 01111111000111223333 357888899999999999999887644443
No 334
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=84.70 E-value=52 Score=34.01 Aligned_cols=96 Identities=22% Similarity=0.323 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 26 ELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLI 105 (760)
Q Consensus 26 ~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~ 105 (760)
.+...|.+|+|.-|.++.++..+......-+.+|...|.+.+|.. .-+..+.+..+.|+......+.+..+.. -
T Consensus 54 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl-----~DIsDklgvLl~e~ge~e~~~a~~~d~y-R 127 (271)
T PF13805_consen 54 ELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDL-----SDISDKLGVLLYEIGELEDQYADRLDQY-R 127 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 455889999999999999988888777888899988886654432 2568888999998888877776665532 2
Q ss_pred HHHHHHH--HhhhHHHHHHHHHHH
Q 046849 106 NRLTEFL--TVDLHDAKESRRRFD 127 (760)
Q Consensus 106 ~pL~~f~--~~~l~~~ke~rk~fe 127 (760)
..|..++ .+.|.+.++.|+...
T Consensus 128 ~~LK~IR~~E~sl~p~R~~r~~l~ 151 (271)
T PF13805_consen 128 IHLKSIRNREESLQPSRDRRRKLQ 151 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHH
Confidence 2344433 445666666665443
No 335
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=83.76 E-value=49 Score=32.92 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHH-HHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKEL-LRSQV 100 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~-l~~~~ 100 (760)
+.|...|.-|+.+-+.+++++...+.+. +++..+. .+-..|+.+|+++.-.... -.+..
T Consensus 2 ~~l~~~E~ele~l~~~ikkLiK~ck~~i-------~a~k~~~-------------~a~~~F~~~L~~f~~~~~g~~~tDD 61 (207)
T cd07602 2 ENLHEHEAELERTNKAIKELIKECKNLI-------SATKNLS-------------KAQRSFAQTLQNFKFECIGETQTDD 61 (207)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-------------HHHHHHHHHHHHHHhhccCCcCccc
Confidence 3577888899999999888777655544 4444333 2455666666665522100 00111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 101 EHVLINRLTEFLTVDLHDAKESRR-RFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTN 179 (760)
Q Consensus 101 ~~~~~~pL~~f~~~~l~~~ke~rk-~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~ 179 (760)
+..+..+|..|.+ .|.++.+.|. -++.++...-.-+.++. .+.=..+.+.||.|..++-+|...+..
T Consensus 62 e~~i~~~L~kF~~-~l~ei~~~r~~L~~q~~~~l~~pL~~F~-----------k~dl~~~ke~kk~FdK~se~~~~al~k 129 (207)
T cd07602 62 EIEIAESLKEFGR-LIETVEDERDRMLENAEEQLIEPLEKFR-----------KEQIGGAKEEKKKFDKETEKFCSSLEK 129 (207)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2246677777763 3555554443 34444444444444433 223345667889999999888887776
No 336
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=83.28 E-value=89 Score=35.54 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCC
Q 046849 20 MEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHD 67 (760)
Q Consensus 20 ~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 67 (760)
|-+.+..-+--|++..|..|.++.-.+.+..+...++.+...|.....
T Consensus 18 fre~l~~he~el~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~ 65 (812)
T KOG1451|consen 18 FRERLKCHEVELDRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQ 65 (812)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666777777777666656666666666666666654433
No 337
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=82.18 E-value=2 Score=39.66 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=25.2
Q ss_pred CCCceEEEEecC---ceeEEEcCCHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPV---KTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 390 ~~~~~F~i~~~~---~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
...|-|.|..-+ .+|+|.|+|+.+|+.|++.|..+
T Consensus 97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 345777777655 35899999999999999999864
No 338
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=82.05 E-value=13 Score=34.03 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=34.9
Q ss_pred CCCCceEEEEe--------cCceeEEEcCCHHHHHHHHHHHHHHHHHhh
Q 046849 389 TDLRLCFRIIS--------PVKTYTLQAETEADRMDWTSKITGVIASLL 429 (760)
Q Consensus 389 ~~~~~~F~i~~--------~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~ 429 (760)
.+.++.++|++ |.++|.|++.+.+-++..|.+|++.+....
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~~ 158 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRESV 158 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 45679999987 458899999999999999999998886543
No 339
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.61 E-value=57 Score=32.19 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKE-LLRSQVE 101 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~-~l~~~~~ 101 (760)
.+..=+.-|+++.+.+++++...+.+..+...|+.+ -..|+.+|+++.-... .-.+..+
T Consensus 3 ~l~~hE~ele~~~~~IkkliK~~~~li~a~K~~s~A--------------------~r~Fa~~L~df~f~~igd~~tdde 62 (207)
T cd07633 3 RLKCYEQELERTNKFIKDVIKDGNALISAIKEYSSA--------------------VQKFSQTLQSFQFDFIGDTLTDDE 62 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhcCCCcccchH
Confidence 344556778888888888777655555544444443 4455555555443211 1123334
Q ss_pred HHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 102 HVLINRLTEFLTVDLHDAK-ESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 102 ~~~~~pL~~f~~~~l~~~k-e~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
..+.++|..|... |..+. ....-++.++..+-.-|.+|. +|.=..+.+.||.|...+-+|+..+..-
T Consensus 63 ~~I~~sL~~F~~~-L~~ie~~r~~l~d~aq~s~~~~L~~F~-----------Kedi~~~Ke~KK~FdK~se~~~~aL~k~ 130 (207)
T cd07633 63 INIAESFKEFAEL-LQEVEEERMMMVQNASDLLIKPLENFR-----------KEQIGFTKERKKKFEKDSEKFYSLLDRH 130 (207)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 5566777777533 44444 334456666666665555543 2333356677888888888887766543
Q ss_pred ---hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 181 ---EAK-KKYEFLESISAIMDVHLRYFKLGFDLL 210 (760)
Q Consensus 181 ---~~~-k~~e~l~~l~~~~~a~~~ff~~g~~~~ 210 (760)
..+ |..++-|.-...-.....|++.+.|..
T Consensus 131 a~~s~k~K~~e~eEA~~~L~~~r~~F~~~aLdYV 164 (207)
T cd07633 131 VNLSSKKKESQLQEADLQVDKERQNFYESSLEYV 164 (207)
T ss_pred hcccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123 344555554444444455666555543
No 340
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=80.71 E-value=0.029 Score=58.55 Aligned_cols=80 Identities=26% Similarity=0.439 Sum_probs=58.0
Q ss_pred CceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccccccccccCceeccCCCCC
Q 046849 310 DWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLNCRTVDLRTSAIKMDGEDT 389 (760)
Q Consensus 310 ~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~ 389 (760)
.|++.|||+. +..+-||.+..... ..--.+.|+|..|+-.. ....
T Consensus 34 ~~~k~~~~~~-~~~~~~~~d~~A~~---------------------------------~~~L~~~~~LR~C~~v~-e~a~ 78 (593)
T KOG4807|consen 34 QWKKHWFVLT-DSSLKYYRDSTAEE---------------------------------ADELDGEIDLRSCTDVT-EYAV 78 (593)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHh---------------------------------cccCCccccHHHHHHHH-HHHH
Confidence 6999999998 55666776543211 00113467888876332 1223
Q ss_pred CCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 390 ~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.+.|.|.|-+.+..|+|.|-+..-+..||.|++..
T Consensus 79 q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT 113 (593)
T KOG4807|consen 79 QRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKT 113 (593)
T ss_pred HhccceeecccchhhhhHHHHHHHHHHHHHHHHhc
Confidence 57799999999999999999999999999999865
No 341
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=79.99 E-value=0.15 Score=63.31 Aligned_cols=107 Identities=16% Similarity=0.263 Sum_probs=72.4
Q ss_pred eEEEEEEeeC-------CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCC
Q 046849 295 IKQGYLLKRS-------SNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNE 367 (760)
Q Consensus 295 ~k~G~L~K~~-------~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (760)
..+|+|+.+- .....+|..-||++. .+.+.+|++.+....|. ..
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~-e~el~fykD~k~~~a~v----------------------------e~ 2350 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIR-EKELGFYKDAKKDLASV----------------------------EL 2350 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHH-hccchhhcccCcccccc----------------------------hh
Confidence 5689987331 013458999999998 67777787765533220 00
Q ss_pred CccccccccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHHHHHhhh
Q 046849 368 DSLNCRTVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGVIASLLN 430 (760)
Q Consensus 368 ~~~~~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~ 430 (760)
.......+.+..+.+.+..+..++++.|.+..+. .-|.|||.++++|+.|+.++..+++.++.
T Consensus 2351 ~~r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~~~lk 2414 (2473)
T KOG0517|consen 2351 LVRGEPPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRAEALK 2414 (2473)
T ss_pred hccCCcchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHHHHhh
Confidence 0001123455556666555666788999998665 67999999999999999999999876663
No 342
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=79.64 E-value=70 Score=31.99 Aligned_cols=43 Identities=7% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG 63 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~ 63 (760)
|.++..+++++..+-++...++.++..+......+.+....|+
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fa 45 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELA 45 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5677778888888888877777776666555556666555555
No 343
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=79.55 E-value=72 Score=32.06 Aligned_cols=46 Identities=9% Similarity=0.200 Sum_probs=36.3
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH
Q 046849 11 PMF---QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFA 56 (760)
Q Consensus 11 P~F---Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~ 56 (760)
|+| +..|..+|.++..+...++++++.=+.+.++.+.+..+...++
T Consensus 24 ~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~ 72 (219)
T cd07621 24 EFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLA 72 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555 5678888999999999999999988888888888876654333
No 344
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=79.51 E-value=72 Score=32.02 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG 63 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~ 63 (760)
+|..++..++.+-..+.++....+....+-..+..+...|.
T Consensus 3 ~v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~ 43 (215)
T cd07604 3 TVGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFA 43 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566666666666666666555555544455555444444
No 345
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=78.61 E-value=1.4e+02 Score=34.82 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYK 93 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~ 93 (760)
+..+...++.++.++..++.+....+.+.++-.+.......+-+-...+.....+ ....+| +++..+-..+.+++..+
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~-~~~~~G-~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLA-HSFSYG-PAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhc-hhHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666665554333332222222222222211111 123333 34555555555555544
Q ss_pred HHHHHHHH-----------H---HHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHH
Q 046849 94 ELLRSQVE-----------H---VLINRLTEFLTVDLHDA-----KESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAE 154 (760)
Q Consensus 94 ~~l~~~~~-----------~---~~~~pL~~f~~~~l~~~-----ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e 154 (760)
..+..-.. . .-+.-|...+ +.|+++ .+...+++..+.-|..+...--.+....-++.+..
T Consensus 178 ~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~-e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~ 256 (560)
T PF06160_consen 178 SEFEELTENGDYLEAREILEKLKEETDELEEIM-EDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQ 256 (560)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 44321111 0 1112233333 223322 24555666666666666555444444333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 046849 155 LEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVHQVLTYAQQSKE 229 (760)
Q Consensus 155 ~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~~l~~~~~~~r~ 229 (760)
...++..+...-...-++=+ -+.++.+-.-+...+.-+.+-.+..+.+...+..+...+...++
T Consensus 257 i~~~l~~~~~~L~~l~l~~~-----------~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~ 320 (560)
T PF06160_consen 257 IEEQLEEALALLKNLELDEV-----------EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKE 320 (560)
T ss_pred HHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555554443322222222 12333333334444444444444444444445555555544444
No 346
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=78.32 E-value=84 Score=32.16 Aligned_cols=28 Identities=4% Similarity=-0.019 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 114 VDLHDAKESRRRFDKSIHAYDQAREKFV 141 (760)
Q Consensus 114 ~~l~~~ke~rk~fek~~~~Yd~al~ky~ 141 (760)
...+.|....+..+.+..+|..+-....
T Consensus 135 k~kK~Y~~~~~ea~~A~~K~~~ae~~~~ 162 (241)
T cd07656 135 TAMKTYHTYHAESKSAERKLKEAEKQEE 162 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777777666643
No 347
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=76.29 E-value=88 Score=31.30 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 046849 15 KQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGD 52 (760)
Q Consensus 15 a~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~ 52 (760)
..|..++.+|..+-..++++++.=+.+....+.+..+.
T Consensus 30 ~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl 67 (218)
T cd07662 30 TFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSL 67 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999988888877777666554
No 348
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.80 E-value=86 Score=34.77 Aligned_cols=149 Identities=11% Similarity=0.134 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH----------HHHHH--------hhCCCCCCCccccch
Q 046849 15 KQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFA----------DALEA--------FGGGHDDPVSVSIGG 76 (760)
Q Consensus 15 a~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~----------~~l~~--------~~~~~~d~~~~~~~~ 76 (760)
..++..|.+.+.|.+-+++++...+.|..+...+......+- ....+ +-..+.|...
T Consensus 37 ~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g~~~l~~v~~~~d~l~~d~~~~l~d~vl----- 111 (460)
T KOG3771|consen 37 RNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPGRDYLQAVADNDDLLWKDLDQKLVDQVL----- 111 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 356677888888888888888888887777665544332111 11111 1111112111
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhh
Q 046849 77 PVISKFISAFRELATYKE----LLRSQV-EHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDI 151 (760)
Q Consensus 77 ~~l~~f~~~l~el~~~~~----~l~~~~-~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~ 151 (760)
.-|.+|...+.+|..... .|++.. ...-.+.++.-.+.+.+.....++.|+++++.|+..- ..
T Consensus 112 ~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN------------~~ 179 (460)
T KOG3771|consen 112 LPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELN------------NE 179 (460)
T ss_pred hhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHH------------HH
Confidence 124444444433333222 222211 1122355777777777777778899999999997642 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 152 VAELEEDLQNSKSAFEKSRFNLVSALTNI 180 (760)
Q Consensus 152 ~~e~~~~l~~~Rk~f~~asldyv~~i~~l 180 (760)
|.|.==.|+..|-.|..-.|+-+..|+.+
T Consensus 180 L~eELP~L~~sRv~f~vp~Fqsl~~~q~v 208 (460)
T KOG3771|consen 180 LLEELPALYSSRVGFFVPTFQSLFNLQLV 208 (460)
T ss_pred HHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 44555578889999988888888777744
No 349
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=75.37 E-value=97 Score=31.33 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046849 159 LQNSKSAFEKSRFNLVSALT 178 (760)
Q Consensus 159 l~~~Rk~f~~asldyv~~i~ 178 (760)
|...|-.|....|..+..|+
T Consensus 174 l~~~r~~~l~~~f~s~~~iQ 193 (224)
T cd07591 174 LVDLRIPYLDPSFEAFVKIQ 193 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554
No 350
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.07 E-value=1.1e+02 Score=31.65 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=50.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-----hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhh
Q 046849 113 TVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR-----DDIVAELEEDLQNSKSAFE----KSRFNLVSALTNIEAK 183 (760)
Q Consensus 113 ~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~-----~~~~~e~~~~l~~~Rk~f~----~asldyv~~i~~l~~~ 183 (760)
...+.++...||.|+..-...+.+..|--...|++. -..++-....+.+-+..+. .+.=||+..|+.....
T Consensus 127 ~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~~e~K~~~s~~qs~~slqK~~~K~~~k~~e~n~k~~~ARNeYLl~L~aaNa~ 206 (260)
T cd07677 127 QETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAH 206 (260)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334455566677777666666666555432223210 0011222223444444444 7888999999988877
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 046849 184 KKYEFLESISAIMDVHLRYFK 204 (760)
Q Consensus 184 k~~e~l~~l~~~~~a~~~ff~ 204 (760)
++.=+.+.|...|...-..|+
T Consensus 207 ~~kYY~~DLp~l~~~~d~~~~ 227 (260)
T cd07677 207 QDRYYQTDLVNIMKALDGNVY 227 (260)
T ss_pred HHHhhhccHHHHHHHhcchHH
Confidence 665566666666665554444
No 351
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=75.01 E-value=2.4 Score=30.20 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.4
Q ss_pred CCccccCCCCCCCeEEeccceeEccchhhH-hhc
Q 046849 486 NDLCAECSAPDPDWASLNLGILLCIECSGV-HRN 518 (760)
Q Consensus 486 n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~-Hr~ 518 (760)
+..|..|+.....+-+.+.++++|..|... |+.
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 568999998878899999999999999987 877
No 352
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=74.61 E-value=9.3 Score=40.02 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=32.8
Q ss_pred CCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 390 ~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.|++||.|.+.. ...+|..|.+.|...|-.+++.|+-
T Consensus 350 ~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 350 SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred cccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 467999999876 6799999999999999999998874
No 353
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.88 E-value=98 Score=30.72 Aligned_cols=150 Identities=16% Similarity=0.218 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEH 102 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~ 102 (760)
+|+.+|.-+..|-..+.+++...+.+ .+++..+. .+-..|+.+|.++... .-+.
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~-------~~a~~~~~-------------~a~~~Fa~~L~~f~~~------~dD~ 55 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKY-------RDALGEAY-------------DGDSAFAESLEEFGGG------HDDP 55 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------------HHHHHHHHHHHHhcCC------CCCh
Confidence 57778888888888777777665554 44444433 2344566666655421 1122
Q ss_pred HHH----HHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 103 VLI----NRLTEFLTVDLHDAKESRRRF-DKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSAL 177 (760)
Q Consensus 103 ~~~----~pL~~f~~~~l~~~ke~rk~f-ek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i 177 (760)
.++ .+|..|. ..|.++...|... +.++...-.-|.++. .++=.++.+.||.|..++-+|...+
T Consensus 56 ~~~a~gg~~l~kF~-~~l~ei~~~~~~L~~q~~~~l~~pL~~F~-----------k~Dl~~vKe~kK~FdK~s~~yd~al 123 (202)
T cd07606 56 ISVAVGGPVMTKFT-SALREIGSYKEVLRSQVEHMLNDRLAQFA-----------DTDLQEVKDARRRFDKASLDYEQAR 123 (202)
T ss_pred HHHhccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3577775 3355555444432 233333322222222 2333456688999999999998865
Q ss_pred HHh---hhhhhhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 046849 178 TNI---EAKKKYEFLESISAIMDVHLR-YFKLGFDLL 210 (760)
Q Consensus 178 ~~l---~~~k~~e~l~~l~~~~~a~~~-ff~~g~~~~ 210 (760)
... .-+++-+.|+..-.-+...-. |.+...+..
T Consensus 124 ~K~~~l~k~~k~~~~~ea~~~l~~~R~~F~~~~ldyv 160 (202)
T cd07606 124 SKFLSLTKDAKPEILAAAEEDLGTTRSAFETARFDLM 160 (202)
T ss_pred HHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 222333455544444444333 334444443
No 354
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=73.72 E-value=2.1 Score=45.59 Aligned_cols=28 Identities=36% Similarity=0.769 Sum_probs=21.7
Q ss_pred CcceeEEEEEEeeCCC----CCCCceeeEEEE
Q 046849 291 EVQTIKQGYLLKRSSN----LRGDWKRRFFVL 318 (760)
Q Consensus 291 ~~~~~k~G~L~K~~~~----~~~~W~rR~fvl 318 (760)
...++|+|++.||..+ .++.||||||.|
T Consensus 283 ~~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~l 314 (315)
T cd05128 283 EPVVLKEGFMIKRAQGRGRLGRKNFKKRYFRL 314 (315)
T ss_pred CchhhhhhhhHhhcccCCCccccchhheeeec
Confidence 4567899999887632 345899999987
No 355
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=73.46 E-value=1.1e+02 Score=30.98 Aligned_cols=143 Identities=16% Similarity=0.264 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC----C--CCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 046849 23 SAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG----H--DDPVSVSIGGPVISKFISAFRELATYKELL 96 (760)
Q Consensus 23 ~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~----~--~d~~~~~~~~~~l~~f~~~l~el~~~~~~l 96 (760)
.+-.+.+|--+|+..+++++.. -..+...|+..|..+... . ++......+.++.......+.+.+..-..+
T Consensus 9 all~~qd~ElrllE~mk~~m~~---raK~d~eya~~L~~~~~q~~k~~~~~~~~~~~~~s~i~~sW~~il~QTE~isk~~ 85 (237)
T cd07685 9 ALLRLQDSELRLMEVMKKWMSQ---RAKSDREYSGMLHHMSAQVEKLDRSQHGALSMLSSPISQSWAVLVSQTETLSQVL 85 (237)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHhhccccccchhhhcccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666664432 112344555555543211 1 110000111245555666666655544444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 046849 97 RSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFV--SLKKNTRDDIVAELEEDLQNSKSAFEKSRF 171 (760)
Q Consensus 97 ~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~--s~~k~k~~~~~~e~~~~l~~~Rk~f~~asl 171 (760)
.+..+..=..|+.++ ..-+...+..||.|......+++.+.+.. .+.|.|+ .=++.-..+..+|..|.+++-
T Consensus 86 ~~~Aeeln~~~~~kL-s~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK~Kk--~Y~~~c~~~e~AR~K~ekas~ 159 (237)
T cd07685 86 RKHAEDLNAGPLSKL-SLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKS--QYRSLAKDSAQAKRKYQEASK 159 (237)
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 444444444455554 34456667788888888888877666433 1333221 113444456667777777653
No 356
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=73.01 E-value=1e+02 Score=30.61 Aligned_cols=124 Identities=19% Similarity=0.154 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKEL-LRSQVEH 102 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~-l~~~~~~ 102 (760)
+..=+.-|++..|..++++.-.+.+ ++++..+. .+-..|+.+|+++...... -.+..+-
T Consensus 4 l~~~e~~l~~t~~~ik~liK~c~~l-------i~A~k~~~-------------~a~~~Fa~sL~~f~~~~igd~~tDde~ 63 (207)
T cd07634 4 LQCHEIELERTNKFIKELIKDGSLL-------IGALRNLS-------------MAVQKFSQSLQDFQFECIGDAETDDEI 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------------HHHHHHHHHHHHHHhhccCCcccccHH
Confidence 4444567777777777766654544 44444333 2345566555555421110 0011112
Q ss_pred HHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 103 VLINRLTEFLTVDLHDAKESR-RRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTN 179 (760)
Q Consensus 103 ~~~~pL~~f~~~~l~~~ke~r-k~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~ 179 (760)
.+...|..|- ..|..+.+.| .-++.++...-.-|.+++ .++=..+.+.||.|..++-+|...+.-
T Consensus 64 ~i~~~l~~Fs-~~l~el~~~~~~L~~~~~~~l~~pL~~f~-----------k~dl~~vKe~kK~FDK~se~y~~aleK 129 (207)
T cd07634 64 SIAQSLKEFA-RLLIAVEEERRRLIQNANDVLIAPLEKFR-----------KEQIGAAKDGKKKFDKESEKYYSILEK 129 (207)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHccchhHHHhHHHHHHHH
Confidence 3444555553 2233333322 234444444444333332 222234557788888888888777665
No 357
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=72.43 E-value=4.9 Score=43.19 Aligned_cols=27 Identities=44% Similarity=0.747 Sum_probs=20.4
Q ss_pred cceeEEEEEEeeCCC-----CCCCceeeEEEE
Q 046849 292 VQTIKQGYLLKRSSN-----LRGDWKRRFFVL 318 (760)
Q Consensus 292 ~~~~k~G~L~K~~~~-----~~~~W~rR~fvl 318 (760)
....|+|++.||... .+..||||||.|
T Consensus 301 ~~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l 332 (333)
T cd05135 301 SVTVKEGYLHKRKTEGPQLLTRFAFKKRYFWL 332 (333)
T ss_pred CchhhhhHhhhccccCCCCcccccccceeeec
Confidence 456899999998741 233599999987
No 358
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=70.58 E-value=1.3e+02 Score=30.90 Aligned_cols=81 Identities=9% Similarity=0.170 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCC----CC-CCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 29 DRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGG----HD-DPVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 29 ~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
+.++.=.+.|+.+..-+.+--.....++..|..+... .+ .+..=++ ..++..|-.-...+...|..+...+..-
T Consensus 12 kR~~DG~~~C~dl~~~~~ERA~IE~~Yak~L~~~akkw~~~ie~gpeyGTl-~~aw~~~~~Eae~~s~~H~~l~~~L~~e 90 (258)
T cd07679 12 KRIDDGHRLCNDLMNCLHERARIEKVYAQQLTEWAKRWRQLVEKGPQYGTV-EKAWCALMSEAEKVSELHLEVKASLMNE 90 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455667776666666555667888888776521 11 1221011 1234444444444455555554444444
Q ss_pred HHHHHHH
Q 046849 104 LINRLTE 110 (760)
Q Consensus 104 ~~~pL~~ 110 (760)
+.+++.+
T Consensus 91 ~~e~ir~ 97 (258)
T cd07679 91 DFEKIKN 97 (258)
T ss_pred HHHHHHH
Confidence 4455543
No 359
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=69.83 E-value=2.9e+02 Score=34.52 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=39.3
Q ss_pred ccccCceeccCCCCCCCCceEEEEecC---ceeEEEcCCHHHHHHHHHHHHHHHHHhhhhh
Q 046849 375 VDLRTSAIKMDGEDTDLRLCFRIISPV---KTYTLQAETEADRMDWTSKITGVIASLLNSD 432 (760)
Q Consensus 375 i~l~~~~v~~~~~~~~~~~~F~i~~~~---~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~ 432 (760)
|.|..--|+..+ .+.|--|-|.+.. ..|.|.|.|..|++.||+.|+.++.++-.+.
T Consensus 670 isL~~livRevA--td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~~ 728 (1167)
T KOG3520|consen 670 ISLQKLIVREVA--TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRNE 728 (1167)
T ss_pred eehHHHHHHHHh--ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCccc
Confidence 444443444433 3445557776653 5699999999999999999999998765544
No 360
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=68.39 E-value=2.2e+02 Score=32.50 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCCceEEEEecC--ceeEEEcCCHHHHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPV--KTYTLQAETEADRMDWTSKITGVIAS 427 (760)
Q Consensus 390 ~~~~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~~i~~ 427 (760)
-+++.|-|+... .-+.|.+.+++-++.||+++.-+++.
T Consensus 474 ~ws~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SN 513 (865)
T KOG2996|consen 474 TWSYGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSN 513 (865)
T ss_pred eeeeeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhc
Confidence 367889988754 34999999999999999999888754
No 361
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=67.35 E-value=12 Score=40.01 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=43.0
Q ss_pred cccccccCceeccCCCCC-CCCceEEEEecC--ceeEEEcCCHHHHHHHHHHHHHHHHHhhhh
Q 046849 372 CRTVDLRTSAIKMDGEDT-DLRLCFRIISPV--KTYTLQAETEADRMDWTSKITGVIASLLNS 431 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~~-~~~~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 431 (760)
...|.|..|-+....... -.+.||+|.+|+ .+..|.|.+.++...|..||...+..++..
T Consensus 215 ~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ll~r 277 (506)
T KOG3551|consen 215 RKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTLLTR 277 (506)
T ss_pred ccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhHHHH
Confidence 345666665554322111 123589999998 578999999999999999999988766543
No 362
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=66.81 E-value=7.2 Score=42.97 Aligned_cols=48 Identities=21% Similarity=0.064 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 709 LVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 709 ~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
...++.|..++++.|.+.-|...+..--||||||+..|. .++|..|++
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~---~k~v~~~Le 451 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGA---RKCVKYFLE 451 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcch---HHHHHHHHH
Confidence 557899999999998876667777778899999999999 676666653
No 363
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=66.27 E-value=1.4 Score=46.46 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=21.8
Q ss_pred cceeEEEEEEeeCCC----CCCCceeeEEEEe
Q 046849 292 VQTIKQGYLLKRSSN----LRGDWKRRFFVLN 319 (760)
Q Consensus 292 ~~~~k~G~L~K~~~~----~~~~W~rR~fvl~ 319 (760)
..++|+|+|.||..+ .++.||||||.|.
T Consensus 281 ~~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 281 PVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred chhhHHHHHHhhccCCCccccccchhheeecC
Confidence 456899999998733 3457999999985
No 364
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=66.16 E-value=6.1 Score=44.05 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCceEEEEecCceeEEEcCC------------HHHHHHHHHHHHHHH
Q 046849 390 DLRLCFRIISPVKTYTLQAET------------EADRMDWTSKITGVI 425 (760)
Q Consensus 390 ~~~~~F~i~~~~~~~~lqA~s------------~~e~~~Wi~ai~~~i 425 (760)
..++||+|.|.. +.+|-.++ .+-...|-.||+.+.
T Consensus 477 ~~phcFEI~T~~-~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 477 TNPHCFEIRTAT-TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred CCCceEEEEeee-EEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 457999999987 55666666 344788998887664
No 365
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=66.04 E-value=1.6e+02 Score=29.99 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 046849 80 SKFISAFRELATY---KELLRSQVEHVLINRLTEF 111 (760)
Q Consensus 80 ~~f~~~l~el~~~---~~~l~~~~~~~~~~pL~~f 111 (760)
..|...+.+++.. +..+...++..+...|..+
T Consensus 65 ~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l 99 (234)
T cd07686 65 KSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMM 99 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5666666665543 4444444444444444333
No 366
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=65.64 E-value=1.7 Score=29.53 Aligned_cols=27 Identities=26% Similarity=0.650 Sum_probs=16.6
Q ss_pred CccccCCCCC-CCeEEeccceeEccchh
Q 046849 487 DLCAECSAPD-PDWASLNLGILLCIECS 513 (760)
Q Consensus 487 ~~C~dC~~~~-p~w~s~n~g~~~C~~Cs 513 (760)
..|.+||.+- -+|..-+++.-||..|-
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 4799999964 48999999999999994
No 367
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=64.49 E-value=5.2 Score=27.62 Aligned_cols=26 Identities=27% Similarity=0.747 Sum_probs=22.2
Q ss_pred CCCccccCCCCCCCeEEeccceeEccchh
Q 046849 485 GNDLCAECSAPDPDWASLNLGILLCIECS 513 (760)
Q Consensus 485 ~n~~C~dC~~~~p~w~s~n~g~~~C~~Cs 513 (760)
.|..|..|++. |...+-|-++|.+|-
T Consensus 7 ~~~~C~~C~~~---~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 7 PNEPCPVCGSR---WFYSDDGFYYCDRCG 32 (36)
T ss_pred CCCcCCCCCCe---EeEccCCEEEhhhCc
Confidence 35669999998 888899999999994
No 368
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.36 E-value=1.7e+02 Score=29.52 Aligned_cols=171 Identities=14% Similarity=0.176 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
-+.-+..+..+-+.++++...++.+..+...+..+-.++.....+- ...-+.+.+ .++......++..++..
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~-~~~~~~~~~-------~~~~e~y~~~~~~l~~~ 84 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASG-PLCEDNDEL-------RNLVEALDSVTTQLDKT 84 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc-ccCCCChHH-------HHHHHHHHHHHHHHHHH
Confidence 3444556677888888887777777777776666665555332221 111111222 22333344455555544
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHhhhhcCCC--hhhHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 046849 104 LINRLTEFLTVDLHDAKESRRRFDKSI---HAYDQAREKFVSLKKNTR--DDIVA--ELEEDLQNSKSAFEKSRFNLVSA 176 (760)
Q Consensus 104 ~~~pL~~f~~~~l~~~ke~rk~fek~~---~~Yd~al~ky~s~~k~k~--~~~~~--e~~~~l~~~Rk~f~~asldyv~~ 176 (760)
+..-+..+.+..|.|.++....|-.+. .+-+..+.-|-+...+-+ .+.-. .....|..++..+..+.-+|-..
T Consensus 85 ~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~ 164 (225)
T cd07590 85 VQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQ 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 433333455556677776666666533 333444444433322110 01111 11256788888887776666432
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 177 LTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLL 210 (760)
Q Consensus 177 i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~ 210 (760)
| -++.+.|=.++..-..||.-.++.+
T Consensus 165 -N-------~~L~~ELP~l~~~r~~f~~p~Fqsl 190 (225)
T cd07590 165 -N-------IKLLEELPKFYNGRTDYFQPCFEAL 190 (225)
T ss_pred -H-------HHHHHHhHHHHHHccHHHHHHHHHH
Confidence 2 3566667777778888887555544
No 369
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=63.31 E-value=9.9 Score=42.79 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=39.0
Q ss_pred ccccccCceeccCC--CCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDG--EDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 373 ~~i~l~~~~v~~~~--~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.+|.+..|.+.+.. ...|..+.|.++-....|+|.|++++-.+.|++.+..|..
T Consensus 541 ~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 541 ATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVS 596 (623)
T ss_pred cccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhc
Confidence 46777777777421 1224446666666667899999999999999999987653
No 370
>PRK12495 hypothetical protein; Provisional
Probab=61.88 E-value=6.5 Score=38.74 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=27.1
Q ss_pred HHHHHhc--CCCCCccccCCCCCCCeEEeccceeEccchhhH
Q 046849 476 VSAILRQ--IPGNDLCAECSAPDPDWASLNLGILLCIECSGV 515 (760)
Q Consensus 476 ~~~~~~~--~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~ 515 (760)
+-..|++ .+.+..|.+||.+=|.. -|+.+|..|-.+
T Consensus 30 ma~lL~~gatmsa~hC~~CG~PIpa~----pG~~~Cp~CQ~~ 67 (226)
T PRK12495 30 MSELLLQGATMTNAHCDECGDPIFRH----DGQEFCPTCQQP 67 (226)
T ss_pred HHHHHHhhcccchhhcccccCcccCC----CCeeECCCCCCc
Confidence 3344444 46789999999998832 699999999743
No 371
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=61.87 E-value=12 Score=30.60 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=38.1
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 697 GSLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 697 ~TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..-|..|...|+.++++.+++.+. .+ ..++..|+...+ -+++..|.+
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~~----------~~---~~~l~~AI~~H~---n~i~~~l~~ 53 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKNK----------PD---NDCLEYAIKSHN---NEIADWLIE 53 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhc----------cH---HHHHHHHHHHhh---HHHHHHHHH
Confidence 456899999999999999998762 12 457999999988 888888764
No 372
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=60.02 E-value=2.7 Score=44.45 Aligned_cols=28 Identities=29% Similarity=0.618 Sum_probs=21.1
Q ss_pred cceeEEEEEEeeCCC----CCCCceeeEEEEe
Q 046849 292 VQTIKQGYLLKRSSN----LRGDWKRRFFVLN 319 (760)
Q Consensus 292 ~~~~k~G~L~K~~~~----~~~~W~rR~fvl~ 319 (760)
..++|+|+|.||..+ ..+.||||||.|.
T Consensus 278 ~~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt 309 (310)
T cd05134 278 PILLKEGFMIKRAQGRKRFGMKNFKKRWFRLT 309 (310)
T ss_pred cchhhhhhHHHhcccCCcccccchhheeeecC
Confidence 456899999986532 2357999999985
No 373
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=59.84 E-value=14 Score=38.57 Aligned_cols=44 Identities=25% Similarity=0.592 Sum_probs=37.4
Q ss_pred CCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhhh
Q 046849 388 DTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGVIASLLNS 431 (760)
Q Consensus 388 ~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 431 (760)
+..-+.+..|.+..+.+.+-|.+..|+.+|+..|..+....++.
T Consensus 103 ~~~~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~ 146 (288)
T KOG1729|consen 103 NERVRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSK 146 (288)
T ss_pred ccccccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 33445579999999999999999999999999999888877765
No 374
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=59.82 E-value=1.5 Score=49.60 Aligned_cols=39 Identities=31% Similarity=0.632 Sum_probs=28.7
Q ss_pred ceeEEEEEEeeCCC--CCCCceeeEEEEecCceEEEEecCCC
Q 046849 293 QTIKQGYLLKRSSN--LRGDWKRRFFVLNSQGTLYYYRNKGI 332 (760)
Q Consensus 293 ~~~k~G~L~K~~~~--~~~~W~rR~fvl~~~~~l~y~~~~~~ 332 (760)
....+|||+++..+ ....|+|-||||. +..||.|+++..
T Consensus 561 ~G~~qg~~~r~k~~~~~~~kW~k~~~~l~-~~~l~~y~n~~~ 601 (638)
T KOG1738|consen 561 RGDRQGWLTRLKLNHLTQEKWRKIWMVLN-DDPLLNYRNHRV 601 (638)
T ss_pred cchhhccchhhccchHHHHHhhhheeeec-Cchhhhhhhhhh
Confidence 45678999977544 3357999999998 667777777654
No 375
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=59.79 E-value=0.99 Score=54.56 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=39.4
Q ss_pred cccccCceeccCCCCCCCCceEEEEecC-ceeEEEcCCHHHHHHHHHHHHHH
Q 046849 374 TVDLRTSAIKMDGEDTDLRLCFRIISPV-KTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 374 ~i~l~~~~v~~~~~~~~~~~~F~i~~~~-~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.+.+..|-+.+.-.+..++..|++.+.+ -.+.|||++.++|-.|++.++..
T Consensus 989 s~c~nscltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~S 1040 (1973)
T KOG4407|consen 989 SECLNSCLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSS 1040 (1973)
T ss_pred ccccccchhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhc
Confidence 4445556655534456788999999988 56999999999999999988654
No 376
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=58.29 E-value=13 Score=41.84 Aligned_cols=88 Identities=23% Similarity=0.318 Sum_probs=57.5
Q ss_pred cceeEEEEEEeeCCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCcccCCCCCCCCCccccccccccCCCCCCCCccc
Q 046849 292 VQTIKQGYLLKRSSNLRGDWKRRFFVLNSQGTLYYYRNKGIKSMGSHHHYAGSADHNGGVFSRFRSRHYRSSSFNEDSLN 371 (760)
Q Consensus 292 ~~~~k~G~L~K~~~~~~~~W~rR~fvl~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (760)
..+.|+|+|.|+.+-+. +||.|.|.+.+.+.|+........|
T Consensus 449 ~~i~k~~~l~k~~~lf~---rkr~lllTn~~rll~~~~~~~~lk~----------------------------------- 490 (604)
T KOG0592|consen 449 SLILKEGALEKRQGLFA---RKRMLLLTNGPRLLYVDPQNLVLKG----------------------------------- 490 (604)
T ss_pred hhHHhHHHHHhhhhhhh---ceeEEEecCCCeEEEEecccceecc-----------------------------------
Confidence 45678888888865443 6799999988888888743332222
Q ss_pred cccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 372 CRTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
.|....+.... .+....|-|.||.++|+|-- =+.....|-.+|...
T Consensus 491 --eip~~~~~~~e----~~n~~~~~i~TP~k~~~l~d-~~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 491 --EIPWSPDLRVE----LKNSSTFFIHTPNKVYYLED-PEQRASVWCKAIETV 536 (604)
T ss_pred --ccccCccccee----eccCcceEEECCccceeccC-cccchhHHHHhhhhh
Confidence 22222221111 12234589999999998876 456677899999877
No 377
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=57.69 E-value=9 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=22.0
Q ss_pred cccCCCC-CCCeEEecccee-EccchhhHhhcC
Q 046849 489 CAECSAP-DPDWASLNLGIL-LCIECSGVHRNL 519 (760)
Q Consensus 489 C~dC~~~-~p~w~s~n~g~~-~C~~Csg~Hr~l 519 (760)
|..|++. .|.|-....|.. ||..|---+|..
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~ 33 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKY 33 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHH
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHh
Confidence 8899995 689999998888 999997655543
No 378
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=56.93 E-value=4.2 Score=37.02 Aligned_cols=34 Identities=29% Similarity=0.747 Sum_probs=28.2
Q ss_pred CCCCccccCCCCCCCeEEeccceeEc-cchhhHhhc
Q 046849 484 PGNDLCAECSAPDPDWASLNLGILLC-IECSGVHRN 518 (760)
Q Consensus 484 ~~n~~C~dC~~~~p~w~s~n~g~~~C-~~Csg~Hr~ 518 (760)
|--..|+-|| -...+.++|+|.-.| ..|-++|..
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCCceeechhhhhccc
Confidence 5567999999 666799999999998 478888865
No 379
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=56.82 E-value=8.3 Score=29.09 Aligned_cols=36 Identities=25% Similarity=0.538 Sum_probs=28.5
Q ss_pred CCccccCCCC-CCCeEEeccce-eEccchhhHhhcCCC
Q 046849 486 NDLCAECSAP-DPDWASLNLGI-LLCIECSGVHRNLGV 521 (760)
Q Consensus 486 n~~C~dC~~~-~p~w~s~n~g~-~~C~~Csg~Hr~lg~ 521 (760)
...|..|+.. .|.|-....|. ++|..|.--.+.-|.
T Consensus 3 ~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 5689999995 57898888887 999999866555443
No 380
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=56.80 E-value=7.5 Score=41.75 Aligned_cols=26 Identities=27% Similarity=0.751 Sum_probs=17.7
Q ss_pred eeEEEEEE-eeCCC----CCCCceeeEEEEe
Q 046849 294 TIKQGYLL-KRSSN----LRGDWKRRFFVLN 319 (760)
Q Consensus 294 ~~k~G~L~-K~~~~----~~~~W~rR~fvl~ 319 (760)
..|+|.++ ||..+ ..+.||||||.|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (337)
T cd05395 301 MVKEGFLFLHRTKGKGPLMTSPFKKLYFTLT 331 (337)
T ss_pred HHHHHHHHHHhccCCCCccccchhhheeeee
Confidence 34677666 65422 3368999999996
No 381
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.79 E-value=3.9e+02 Score=31.52 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHH
Q 046849 12 MFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELAT 91 (760)
Q Consensus 12 ~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~ 91 (760)
.||+.|+.++++-..=-..+..++..++.++..|+--... .+..+.+-...+++.....++...+.++..+++++..
T Consensus 164 elr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~---~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~ 240 (660)
T KOG4302|consen 164 ELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSM---TVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKE 240 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---chhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHH
Confidence 5777777777666655555566666666666665532111 1122222222233323344556789999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 046849 92 YKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQA 136 (760)
Q Consensus 92 ~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~a 136 (760)
-.....+.+.+...+ +..+- +-+.--.+.+..|.... .||..
T Consensus 241 ~k~qr~~kl~~l~~~-~~~LW-n~l~ts~Ee~~~f~~~t-~~e~t 282 (660)
T KOG4302|consen 241 EKKQRLQKLQDLRTK-LLELW-NLLDTSDEERQRFVHVT-ESEAT 282 (660)
T ss_pred HHHHHHHHHHHHHHH-HHHHH-HhccCCHHHHHHHcccc-HHHhh
Confidence 766665555444333 33333 22333457778887666 55543
No 382
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=55.67 E-value=2.4e+02 Score=28.64 Aligned_cols=29 Identities=21% Similarity=0.040 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 15 KQLFSMEESAEELKDRCQRLYKGCKKFTE 43 (760)
Q Consensus 15 a~l~~~e~~l~~l~~~l~kl~k~~k~~~~ 43 (760)
..+..|-+....=+.+-++|.+.++++..
T Consensus 23 el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 23 ELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 34455556666666677777777777643
No 383
>KOG4240 consensus Multidomain protein, contains SPEC repeats, PH, SH3, and separate rac-specific and rho-specific guanine nucleotide exchange factor domains [Signal transduction mechanisms]
Probab=55.64 E-value=3.1e+02 Score=33.91 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=29.5
Q ss_pred ceEEEEecC--ceeEEEcCCHHHHHHHHHHHHHHHHHh
Q 046849 393 LCFRIISPV--KTYTLQAETEADRMDWTSKITGVIASL 428 (760)
Q Consensus 393 ~~F~i~~~~--~~~~lqA~s~~e~~~Wi~ai~~~i~~~ 428 (760)
.-|+|.... ..|.++|.+-+-...|+..|+..+...
T Consensus 894 ~kf~~~~g~~~~~~~~~a~~~~~K~~W~~~ir~~~~~~ 931 (1025)
T KOG4240|consen 894 CKFELWVGRTESVIDLKASNHETKQKWVKEIREVLQER 931 (1025)
T ss_pred eEEEEeccCCCcceeeecCCcchhhhhccchHHHHHHH
Confidence 447776543 469999999999999999999998654
No 384
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=53.73 E-value=1.1e+02 Score=24.13 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=36.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 046849 113 TVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRF 171 (760)
Q Consensus 113 ~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asl 171 (760)
+..|..+-..|++..-.+.-|+ |...+ .|.|..+.+.+..|.+.|..|..-+.
T Consensus 7 ~~QLd~I~~~K~~l~ik~~H~E----kl~ki--tK~p~El~~i~~kl~~~R~~FLn~~v 59 (62)
T PF06034_consen 7 TQQLDEINQMKRQLTIKSQHWE----KLKKI--TKNPKELQEIEKKLQELRQNFLNFGV 59 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777666666564 33334 35677888999999999999976543
No 385
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=52.15 E-value=8.6 Score=27.62 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=18.5
Q ss_pred ccccCCCCCCCeEEeccceeEccchh
Q 046849 488 LCAECSAPDPDWASLNLGILLCIECS 513 (760)
Q Consensus 488 ~C~dC~~~~p~w~s~n~g~~~C~~Cs 513 (760)
.|..||+.. ...--.-|-++|..|-
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG 26 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCG 26 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCC
Confidence 588999976 3334568999999994
No 386
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=52.02 E-value=26 Score=34.90 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 046849 694 LQGGSLLHLACQCGNLVMLELLIQFGAD 721 (760)
Q Consensus 694 ~~G~TpLh~Aa~~g~~~~v~lLL~~GAd 721 (760)
..|.|-|--|...++.+++.+||++||-
T Consensus 252 NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 252 NSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 4799999999999999999999999994
No 387
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.49 E-value=3.1e+02 Score=28.45 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=23.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 113 TVDLHDAKESRRRFDKSIHAYDQAREKFVSL 143 (760)
Q Consensus 113 ~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~ 143 (760)
...++++...||.|++....=..|..||..+
T Consensus 126 ~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~ 156 (263)
T cd07678 126 LETVKELSKSKKLYGQLERVSEVAKEKAADV 156 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888888888888888888644
No 388
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=50.45 E-value=7.5 Score=29.58 Aligned_cols=30 Identities=23% Similarity=0.508 Sum_probs=20.6
Q ss_pred CCCccccCCCCCCCeEEeccceeEccchhhHhhcC
Q 046849 485 GNDLCAECSAPDPDWASLNLGILLCIECSGVHRNL 519 (760)
Q Consensus 485 ~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~l 519 (760)
.--.|+|||+.+. .-.--++-|.+|- ||.|
T Consensus 19 miYiCgdC~~en~---lk~~D~irCReCG--~RIl 48 (62)
T KOG3507|consen 19 MIYICGDCGQENT---LKRGDVIRCRECG--YRIL 48 (62)
T ss_pred EEEEecccccccc---ccCCCcEehhhcc--hHHH
Confidence 3458999999763 1123477899996 7765
No 389
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.25 E-value=6.1e+02 Score=31.80 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh
Q 046849 28 KDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG 63 (760)
Q Consensus 28 ~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~ 63 (760)
...-++....++.+.+..++.......++..+.+|.
T Consensus 1449 ~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1449 QQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333445555555554
No 390
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.10 E-value=2.6e+02 Score=27.46 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH
Q 046849 24 AEELKDRCQRLYKGCKKFTEALGVACSGDSAFA 56 (760)
Q Consensus 24 l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~ 56 (760)
+..+....+.+.+.++.+.+.+..+..+...|+
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~ 37 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLESLQKAINQFI 37 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666555544333333
No 391
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=49.74 E-value=18 Score=42.22 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=37.6
Q ss_pred ccccccCceeccCCCCCCCCceEEEEecCceeEEEcCCHHHHHHHHHHHHHH
Q 046849 373 RTVDLRTSAIKMDGEDTDLRLCFRIISPVKTYTLQAETEADRMDWTSKITGV 424 (760)
Q Consensus 373 ~~i~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~ 424 (760)
..+++....+.. .....-+..|.|++|-++..++|++..||..||.+++..
T Consensus 43 ~~~d~t~a~~~e-Ss~~n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~ 93 (1099)
T KOG1170|consen 43 ALLDLTSAHVAE-SSTNNPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTP 93 (1099)
T ss_pred HHHhcccccccc-cccCCCCCCeeEecccHHhhhhccchhHHHHhhccccch
Confidence 345555555443 222344577889999999999999999999999887643
No 392
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=49.64 E-value=3.3e+02 Score=28.50 Aligned_cols=123 Identities=15% Similarity=0.237 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHH
Q 046849 12 MFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELAT 91 (760)
Q Consensus 12 ~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~ 91 (760)
.||..|..+..-++.-...=..+.+....+.+.+.-+......+...| |..+....+..... ...|...-.-+.+|..
T Consensus 81 ~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~l-p~~~~~~~~~~~~~-i~~L~~ll~~l~~l~~ 158 (296)
T PF13949_consen 81 SLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASL-PSSSPSDSPQVSEV-IRQLRELLNKLEELKK 158 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS---B---SSGSS-HH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhC-CCCCcccccchhHH-HHHHHHHHHHHHHHHH
Confidence 455556655555555544444444444444444443333333332222 22211111111000 1234455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHH
Q 046849 92 YKELLRSQVEHVLINRLTEFLTVDLHDAK-----ESRRRFDKSIHAYDQAREK 139 (760)
Q Consensus 92 ~~~~l~~~~~~~~~~pL~~f~~~~l~~~k-----e~rk~fek~~~~Yd~al~k 139 (760)
.|..++..+...+ . .+.+...|..++ +.-.-|+....+|+.....
T Consensus 159 eR~~~~~~lk~~~-~--~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~ 208 (296)
T PF13949_consen 159 EREELLEQLKEKL-Q--NDDISKLLSELNKNGSADFEALFEEELKKFDPLQNR 208 (296)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-h--hccHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 5666555554322 1 111222222221 2445566666666655443
No 393
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=49.40 E-value=3.2e+02 Score=28.21 Aligned_cols=25 Identities=4% Similarity=0.171 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 046849 114 VDLHDAKESRRRFDKSIHAYDQARE 138 (760)
Q Consensus 114 ~~l~~~ke~rk~fek~~~~Yd~al~ 138 (760)
..+..+..+|++|+..-.+++.+..
T Consensus 120 ~~~~~l~KaK~~Y~~~c~e~e~~~~ 144 (261)
T cd07648 120 TTTAALQKAKEAYHARCLELERLRR 144 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666789999998888887643
No 394
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=48.87 E-value=1.5e+02 Score=27.58 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 046849 78 VISKFISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHA 132 (760)
Q Consensus 78 ~l~~f~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~ 132 (760)
.+..+...+.+...--+.+....-.. -.++. .+|+.|++.|+.|-..+.+
T Consensus 97 l~~~L~~~~~e~eeeSe~lae~fl~g-~~d~~----~Fl~~f~~~R~~yH~R~~K 146 (150)
T PF07200_consen 97 LLARLQAAASEAEEESEELAEEFLDG-EIDVD----DFLKQFKEKRKLYHLRRAK 146 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-S-SSS-HHHHH----HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHH----HHHHHHHHHHHHHHHHHhh
Confidence 45666666666666544443332211 11333 4467777888887766643
No 395
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=47.20 E-value=3.8e+02 Score=28.55 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046849 121 ESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKK 185 (760)
Q Consensus 121 e~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~ 185 (760)
..++-|+++..+.|.++.|..-....++-=+..-.++...+..+.-+..+-||......+..+.+
T Consensus 162 n~~~lfe~i~~kl~~ai~kv~p~~~~~PLlKkpl~~a~w~~iE~~~~~~~~ey~~Rr~ll~sRL~ 226 (465)
T KOG3973|consen 162 NEWKLFETIRQKLDGAIKKVSPSQRSHPLLKKPLDEATWPEIEKQCESFSREYYNRRLLLNSRLK 226 (465)
T ss_pred hHHHHHHHHHHHHHhHHhcCCHhhcCCchhcCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999886433222110000012223444444445566778877777776666
No 396
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=47.11 E-value=3.1e+02 Score=27.44 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGD 52 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~ 52 (760)
|..|..+|.++..+.+.+..+++.=+.+..+++++..+.
T Consensus 10 k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~ 48 (216)
T cd07627 10 KQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETL 48 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888777777766666666554
No 397
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.66 E-value=5.4e+02 Score=30.08 Aligned_cols=148 Identities=10% Similarity=0.155 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHH
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYK 93 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~ 93 (760)
|..++..++.++.++..++.+.+....+.++-.+.......+-+....+.....+ ..+.+| +++..+-..|.+++..+
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~-~~~~~G-~a~~~le~~l~~~e~~f 181 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLA-NRFSFG-PALDELEKQLENLEEEF 181 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccc-chHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666665555333333222222222222211111 223444 45666666666666655
Q ss_pred HHHHHHH-----------HHH---HHHHHHHHHHhhhHH-HHH----HHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHH
Q 046849 94 ELLRSQV-----------EHV---LINRLTEFLTVDLHD-AKE----SRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAE 154 (760)
Q Consensus 94 ~~l~~~~-----------~~~---~~~pL~~f~~~~l~~-~ke----~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e 154 (760)
..+..-. -.. -+.-|...+ ..|++ +++ .-.+++..+.-|..+..+--.+....-+..+..
T Consensus 182 ~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~-~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~ 260 (569)
T PRK04778 182 SQFVELTESGDYVEAREILDQLEEELAALEQIM-EEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQD 260 (569)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHH
Confidence 5442111 111 122244444 22322 233 445667777778777766555555333444444
Q ss_pred HHHHHHHHHH
Q 046849 155 LEEDLQNSKS 164 (760)
Q Consensus 155 ~~~~l~~~Rk 164 (760)
...++..+..
T Consensus 261 l~~~i~~~~~ 270 (569)
T PRK04778 261 LKEQIDENLA 270 (569)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 398
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.52 E-value=4.6e+02 Score=29.88 Aligned_cols=79 Identities=8% Similarity=0.199 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 046849 117 HDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIM 196 (760)
Q Consensus 117 ~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~ 196 (760)
..++-.|.+|-+.+..--..+.++..+-+.++.+++++.+ ++.+.|+...+-+--+..++.++.++.+ .++..+-..+
T Consensus 566 ~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~-~~~eer~~i~e~a~~La~R~eea~e~qe-~L~~~~~~L~ 643 (741)
T KOG4460|consen 566 RATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLS-YCREERKSLREMAERLADRYEEAKEKQE-DLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence 4456788888888888888888887665555444444332 2334444444445555566666666655 3444444444
Q ss_pred H
Q 046849 197 D 197 (760)
Q Consensus 197 ~ 197 (760)
+
T Consensus 644 ~ 644 (741)
T KOG4460|consen 644 H 644 (741)
T ss_pred h
Confidence 3
No 399
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.45 E-value=3.6e+02 Score=28.02 Aligned_cols=90 Identities=9% Similarity=0.023 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh----C----CCC--CCCccccchhHHHHHHHH---H
Q 046849 20 MEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG----G----GHD--DPVSVSIGGPVISKFISA---F 86 (760)
Q Consensus 20 ~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~----~----~~~--d~~~~~~~~~~l~~f~~~---l 86 (760)
+-+++..|..|.+.=++....|.+-..+-......++..|..+. . ... .+..+. +++.-|... +
T Consensus 3 ~~Eq~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~Kk~~~~~~~~~~~~~---s~~~~W~~~L~qt 79 (264)
T cd07654 3 HLEQLSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLKREWPGSGELKPEDDR---SGYTVWGAWLEGL 79 (264)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccc---hHHHHHHHHHHHH
Confidence 34666777777666555555555444444444556666665432 1 111 111111 234444444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 87 RELATYKELLRSQVEHVLINRLTEFL 112 (760)
Q Consensus 87 ~el~~~~~~l~~~~~~~~~~pL~~f~ 112 (760)
..+...+..+...+...+..+|..+.
T Consensus 80 ~~~A~~~~~~ae~l~~~i~~~l~~l~ 105 (264)
T cd07654 80 DAVAQSRQNRCEAYRRYISEPAKTGR 105 (264)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45555677777777777777776654
No 400
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=46.24 E-value=2.7e+02 Score=26.52 Aligned_cols=29 Identities=7% Similarity=0.123 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 12 MFQKQLFSMEESAEELKDRCQRLYKGCKK 40 (760)
Q Consensus 12 ~FRa~l~~~e~~l~~l~~~l~kl~k~~k~ 40 (760)
.++.++..+.+.-..++.+.-+.+|.-+.
T Consensus 16 ~~~~sls~~~~~~kqve~~~l~~lkqqqd 44 (165)
T PF09602_consen 16 QWSQSLSLFASFMKQVEQQTLKKLKQQQD 44 (165)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46777777777777777777776666333
No 401
>PRK11019 hypothetical protein; Provisional
Probab=45.97 E-value=8.8 Score=32.42 Aligned_cols=39 Identities=26% Similarity=0.551 Sum_probs=27.7
Q ss_pred CCCccccCCCCCC--CeEEeccceeEccchhhHhhcCCCCcc
Q 046849 485 GNDLCAECSAPDP--DWASLNLGILLCIECSGVHRNLGVHIS 524 (760)
Q Consensus 485 ~n~~C~dC~~~~p--~w~s~n~g~~~C~~Csg~Hr~lg~~~s 524 (760)
+-..|.+||.+=| .|..+ .|+..|++|...+-..+.|..
T Consensus 35 syg~C~~CG~~Ip~~Rl~A~-P~a~~Cv~Cq~~~E~~~k~~~ 75 (88)
T PRK11019 35 SLTECEECGEPIPEARRKAI-PGVRLCVACQQEKDLQQAAFS 75 (88)
T ss_pred cCCeeCcCCCcCcHHHHhhc-CCccccHHHHHHHHHHHhHhc
Confidence 4579999999655 44333 378999999988766555543
No 402
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=45.67 E-value=3.9e+02 Score=28.22 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 129 SIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAK 183 (760)
Q Consensus 129 ~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~ 183 (760)
....|+..+.+.++.+.=-......+--.+|..+--.|+.++.+|...+.++..+
T Consensus 137 ~~~~~~~~~~~~l~~P~lG~~Re~q~~~~~l~~a~~~~~~a~~ey~~~l~~~~~~ 191 (293)
T PF09712_consen 137 WKEQYRETLGRWLQMPALGPSREHQEQLQALFDAWMEYQRASQEYQAQLSEAWMK 191 (293)
T ss_pred HHHHHHHHHHHHHcCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999998776543333344555568888899999999999999888644
No 403
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=45.19 E-value=3.1e+02 Score=26.98 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHH--Hhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 046849 100 VEHVLINRLTEFL--TVDL--HDAKESRRRFDKSIHAYDQAREKFVSLKKNT 147 (760)
Q Consensus 100 ~~~~~~~pL~~f~--~~~l--~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k 147 (760)
.+..+..-++++- |.|| ..|.++|..-+.+++.|.++++++.++..-.
T Consensus 7 CqsaYY~amEkvG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ 58 (201)
T PF11172_consen 7 CQSAYYSAMEKVGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFD 58 (201)
T ss_pred hHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3344444444432 3333 6677888899999999999999998886643
No 404
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=44.68 E-value=6.6 Score=26.31 Aligned_cols=27 Identities=37% Similarity=0.663 Sum_probs=16.1
Q ss_pred ccccCCCCCCCeEEeccceeEccchhhHhhcC
Q 046849 488 LCAECSAPDPDWASLNLGILLCIECSGVHRNL 519 (760)
Q Consensus 488 ~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~l 519 (760)
.|++||+... .-....+-|..|. ||.|
T Consensus 2 ~C~~Cg~~~~---~~~~~~irC~~CG--~RIl 28 (32)
T PF03604_consen 2 ICGECGAEVE---LKPGDPIRCPECG--HRIL 28 (32)
T ss_dssp BESSSSSSE----BSTSSTSSBSSSS---SEE
T ss_pred CCCcCCCeeE---cCCCCcEECCcCC--CeEE
Confidence 5899998654 1123456788886 5543
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.17 E-value=5.3e+02 Score=31.05 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046849 158 DLQNSKSAFEKSRFNLVSALTNIEAKKK 185 (760)
Q Consensus 158 ~l~~~Rk~f~~asldyv~~i~~l~~~k~ 185 (760)
++.+.|+...+.+-.+..++.++..+..
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666665544
No 406
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=43.90 E-value=18 Score=36.87 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=27.3
Q ss_pred CCCCCccccCCCCCC-CeEEeccceeEccchhhH
Q 046849 483 IPGNDLCAECSAPDP-DWASLNLGILLCIECSGV 515 (760)
Q Consensus 483 ~~~n~~C~dC~~~~p-~w~s~n~g~~~C~~Csg~ 515 (760)
.|.-..|+.||..++ .+.+..-|-++|..|.+.
T Consensus 144 ~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 144 ALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 466689999998655 677899999999999853
No 407
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=43.82 E-value=10 Score=27.53 Aligned_cols=27 Identities=30% Similarity=0.661 Sum_probs=20.1
Q ss_pred ccccCCCCCCCeEEeccceeEccchhhHhhcC
Q 046849 488 LCAECSAPDPDWASLNLGILLCIECSGVHRNL 519 (760)
Q Consensus 488 ~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~l 519 (760)
.|.+||...... ..+.+-|..|. ||.|
T Consensus 4 ~C~~Cg~~~~~~---~~~~irC~~CG--~rIl 30 (44)
T smart00659 4 ICGECGRENEIK---SKDVVRCRECG--YRIL 30 (44)
T ss_pred ECCCCCCEeecC---CCCceECCCCC--ceEE
Confidence 699999964422 46788999997 6665
No 408
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.75 E-value=5.6e+02 Score=29.51 Aligned_cols=227 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHH
Q 046849 12 MFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELAT 91 (760)
Q Consensus 12 ~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~ 91 (760)
.+|..+..++..+..++.-+.-+....+.+-+.+..+......+-..|.......+++...-. ..-.+....+.+|.-
T Consensus 138 ~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~--d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 138 GAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV--DLQNRVQTLLEELAF 215 (546)
T ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHH-------
Q 046849 92 YKELLRSQVEHVLINR-------LTEFLTVDL-HDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELE------- 156 (760)
Q Consensus 92 ~~~~l~~~~~~~~~~p-------L~~f~~~~l-~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~------- 156 (760)
.....-.-+......+ ...|.+..| ...++.|.+||.....+..-++... ...+.++.
T Consensus 216 ~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y-------~~kI~~i~~~~~~~~ 288 (546)
T KOG0977|consen 216 LKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWY-------KRKIQEIRTSAERAN 288 (546)
T ss_pred HHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHhhhcccc
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHH
Q 046849 157 -------EDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFD-LLSKIEPYVHQVLTYAQQSK 228 (760)
Q Consensus 157 -------~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~-~~~~~~~~~~~l~~~~~~~r 228 (760)
++|...|..- =++-.+|.+++.+.- .|+..+..+..+..==.+.|+ .+.+.+..+..|+..++..-
T Consensus 289 ~~~~~~rEEl~~~R~~i----~~Lr~klselE~~n~--~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~ 362 (546)
T KOG0977|consen 289 VEQNYAREELRRIRSRI----SGLRAKLSELESRNS--ALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLS 362 (546)
T ss_pred chhHHHHHHHHHHHhcc----cchhhhhccccccCh--hHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHH---HHHHHHHHHHHHHhhhhhhcc
Q 046849 229 EVAN---VEQDKLAKRIQEFRTQAELDN 253 (760)
Q Consensus 229 ~~~~---~~~~~l~~~~~~~~~~~~~~~ 253 (760)
..++ ..+..|..++..+++.++-+.
T Consensus 363 ~Elq~LlD~ki~Ld~EI~~YRkLLegee 390 (546)
T KOG0977|consen 363 VELQKLLDTKISLDAEIAAYRKLLEGEE 390 (546)
T ss_pred HHHHHhhchHhHHHhHHHHHHHHhcccc
No 409
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=43.44 E-value=18 Score=37.04 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=26.7
Q ss_pred CCCCCccccCCCCCC-CeEEeccceeEccchh
Q 046849 483 IPGNDLCAECSAPDP-DWASLNLGILLCIECS 513 (760)
Q Consensus 483 ~~~n~~C~dC~~~~p-~w~s~n~g~~~C~~Cs 513 (760)
.|.-..|+-||.+.. .|.+..-|-++|..|.
T Consensus 146 ~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~ 177 (247)
T PRK00085 146 GLDLDHCAVCGAPGDHRYFSPKEGGAVCSECG 177 (247)
T ss_pred ccchhhHhcCCCCCCceEEecccCCccccccc
Confidence 466689999999755 7889999999999997
No 410
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=43.37 E-value=6.5e+02 Score=30.12 Aligned_cols=210 Identities=12% Similarity=0.116 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCC---ccccc-hhHHHHHHHH
Q 046849 10 SPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPV---SVSIG-GPVISKFISA 85 (760)
Q Consensus 10 SP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~---~~~~~-~~~l~~f~~~ 85 (760)
-|.+-..++.+...++.+..|+.+=......+.+.+.+.-.+...|..-++.+.....|.+ .+.-+ ...+....++
T Consensus 24 i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm 103 (683)
T PF08580_consen 24 IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQM 103 (683)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHH
Confidence 5778888888899999999999999998888888888877777788777776543322211 11100 0122222222
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhHHHHHHHH-HHHHH-H-----HHHHHHHHHHh--hhhcCC
Q 046849 86 FRELATYKELLRSQ---------VEHVLINRLTEFLTVDLHDAKESRR-RFDKS-I-----HAYDQAREKFV--SLKKNT 147 (760)
Q Consensus 86 l~el~~~~~~l~~~---------~~~~~~~pL~~f~~~~l~~~ke~rk-~fek~-~-----~~Yd~al~ky~--s~~k~k 147 (760)
.-++-.....+-.+ +-+.++.-|..-+++-++.+-+... +|.-- . -+.++.+++-- ...-.+
T Consensus 104 ~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~ 183 (683)
T PF08580_consen 104 ELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNK 183 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcC
Confidence 22222222222222 2233444444444444444433321 11111 0 01222222220 000001
Q ss_pred C---hhhHHHHHH---H--HHHHHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHH
Q 046849 148 R---DDIVAELEE---D--LQNSKSAFEKSRFNLV-SALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLS-KIEPYV 217 (760)
Q Consensus 148 ~---~~~~~e~~~---~--l~~~Rk~f~~asldyv-~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~-~~~~~~ 217 (760)
. |.....++. . --.+|..=+++||||+ .+|.+++.+-. .++..++..+..-+.-....|..+. +++.+-
T Consensus 184 ~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~-~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK 262 (683)
T PF08580_consen 184 RFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAE-SIFPSACEELEDRYERLEKKWKKLEKEAESLK 262 (683)
T ss_pred CcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111 1 1246777788999999 78888887754 4555566655555544444444333 444444
Q ss_pred HHH
Q 046849 218 HQV 220 (760)
Q Consensus 218 ~~l 220 (760)
+++
T Consensus 263 ~EL 265 (683)
T PF08580_consen 263 KEL 265 (683)
T ss_pred HHh
Confidence 444
No 411
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=42.83 E-value=3.6e+02 Score=26.93 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 17 LFSMEESAEELKDRCQRLYKGCKKFTEALGV 47 (760)
Q Consensus 17 l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~ 47 (760)
+...|..++.+.+.++.++.+.+.|++....
T Consensus 11 l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~ 41 (215)
T cd07641 11 LDQDRTALQKVKKSVKAIYNSGQDHVQNEEN 41 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 412
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.39 E-value=3.5e+02 Score=26.74 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 25 EELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGP-VISKFISAFRELATYKELLRSQVEHV 103 (760)
Q Consensus 25 ~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~-~l~~f~~~l~el~~~~~~l~~~~~~~ 103 (760)
+..+.++..|...++....+..........++.++..|+.....-.....++. .|.++-..+.++......+.......
T Consensus 7 ~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~ 86 (198)
T cd07630 7 QKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGN 86 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888887777777777778888888888854322111121111 44555444444444444444444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 046849 104 LINRLTEFLTVDLHDAKESRRRFDKSIHAYDQ 135 (760)
Q Consensus 104 ~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~ 135 (760)
-..-|...++..++-....|.-|......|..
T Consensus 87 d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~ 118 (198)
T cd07630 87 NENTLGLTLDLYSRYSESEKDMLFRRTCKLIE 118 (198)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777778778888888888887754
No 413
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=42.35 E-value=21 Score=38.22 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=26.2
Q ss_pred ceEEEEecC----ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 393 LCFRIISPV----KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 393 ~~F~i~~~~----~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
..|.+-|.+ .++.|.+|+..|+..|...|=..-.
T Consensus 365 lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch 402 (506)
T KOG3551|consen 365 LSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCH 402 (506)
T ss_pred EEEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHH
Confidence 456666654 5799999999999999988755443
No 414
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=41.51 E-value=6.2e+02 Score=29.33 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCC--CCCCccccchhHHHHHHHH
Q 046849 8 EDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGH--DDPVSVSIGGPVISKFISA 85 (760)
Q Consensus 8 ~DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~--~d~~~~~~~~~~l~~f~~~ 85 (760)
+.||.++..+..++..=. .++..+....+.+.+++.++.. ...|...|.++.... .+... + ...+..+-..
T Consensus 58 L~s~~v~~~~~iL~~~~s---~~~~~f~~~~~~l~~~~~ea~d-~~~fL~~l~~~~~~l~~~~~~~--i-~~~i~~l~~~ 130 (579)
T PF08385_consen 58 LKSPEVQKILEILEKAKS---SYTKSFKNLTRELKEALNEAKD-NNKFLKPLEPPFELLEASDLSE--I-QESIPPLFHH 130 (579)
T ss_pred HcchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCHHH--H-HHHHHHHHHH
Confidence 357777777777754422 3333444443334444333322 345555554432211 11111 1 1234444444
Q ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 86 FRELATY---------KELLRSQVEHVLINRLTEFLTVD----------LHDAKESRRRFDKSIHAYDQAREKFV 141 (760)
Q Consensus 86 l~el~~~---------~~~l~~~~~~~~~~pL~~f~~~~----------l~~~ke~rk~fek~~~~Yd~al~ky~ 141 (760)
++.++.. ...|+..+.+.++..+..++... ++.+++.-.-++.....|........
T Consensus 131 l~~iw~~S~~y~~~~R~~~Ll~~isn~ii~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 205 (579)
T PF08385_consen 131 LRLIWRISRYYYPPERMTSLLEKISNQIIQKCQKYLDPSDLFSGDYDEFIKKLNECIDILESWKETYEEFREQIR 205 (579)
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444432 12345555566666666665321 23334455555555555555555443
No 415
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=41.34 E-value=7.5 Score=26.46 Aligned_cols=29 Identities=24% Similarity=0.646 Sum_probs=14.9
Q ss_pred CccccCCCCCCCeE-E--eccceeEccchhhHh
Q 046849 487 DLCAECSAPDPDWA-S--LNLGILLCIECSGVH 516 (760)
Q Consensus 487 ~~C~dC~~~~p~w~-s--~n~g~~~C~~Csg~H 516 (760)
++|..||.+- .+. . -+.--.+|..|.-||
T Consensus 1 kfC~~CG~~l-~~~ip~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 1 KFCPQCGGPL-ERRIPEGDDRERLVCPACGFIH 32 (34)
T ss_dssp -B-TTT--B--EEE--TT-SS-EEEETTTTEEE
T ss_pred CccccccChh-hhhcCCCCCccceECCCCCCEE
Confidence 4789999852 222 1 245567899998877
No 416
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=40.51 E-value=7.2e+02 Score=29.81 Aligned_cols=32 Identities=9% Similarity=0.352 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 11 PMFQKQLFSMEESAEELKDRCQRLYKGCKKFT 42 (760)
Q Consensus 11 P~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~ 42 (760)
--+|.-++.+|+++...+..|.-|--.|...-
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~lE 119 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRLE 119 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888899988888888888877776643
No 417
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=39.65 E-value=4e+02 Score=26.64 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG 51 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~ 51 (760)
.++..|..+..|.+-++++..+++.|.++...+..+
T Consensus 20 ~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~ 55 (211)
T cd07588 20 NFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSET 55 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777766665555443
No 418
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=39.61 E-value=12 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.603 Sum_probs=23.3
Q ss_pred CCCCCccccCCCCCC--CeEEeccceeEccchhhHh
Q 046849 483 IPGNDLCAECSAPDP--DWASLNLGILLCIECSGVH 516 (760)
Q Consensus 483 ~~~n~~C~dC~~~~p--~w~s~n~g~~~C~~Csg~H 516 (760)
.++...|.+||.+=| +|. ...|+..|+.|...+
T Consensus 28 ~~s~g~C~~Cg~~Ip~~Rl~-a~p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 28 GPSLRECEDCGEPIPEARRE-ALPGVTRCVSCQEIL 62 (63)
T ss_pred CCCCCeeccCCCcChHHHHh-hcCCcCCcHHHHhhc
Confidence 456789999999655 332 234788999997543
No 419
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=39.55 E-value=6.4e+02 Score=28.96 Aligned_cols=70 Identities=9% Similarity=0.264 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh-hhhHHHHH-HHHHHHHHHHHH-HHHHHHHhhh-hHHHHHHH
Q 046849 151 IVAELEEDLQNSKSAFEKSRFNLV-SALTNIEAK-KKYEFLES-ISAIMDVHLRYF-KLGFDLLSKI-EPYVHQVL 221 (760)
Q Consensus 151 ~~~e~~~~l~~~Rk~f~~asldyv-~~i~~l~~~-k~~e~l~~-l~~~~~a~~~ff-~~g~~~~~~~-~~~~~~l~ 221 (760)
...+....|...|..=....-||. .+|..++.. -...+++. |+. .+..+.|- +...++..++ ..|+..+.
T Consensus 126 a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~~LLk-~~~~~~FL~~~~~~~a~El~~~Yv~tM~ 200 (508)
T PF04129_consen 126 AIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQVLLK-YKELFQFLKKHSPELAKELRQAYVETMS 200 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHh-hHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345666667776655555555554 577777653 35566664 232 23344443 3334454554 34555553
No 420
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=38.44 E-value=50 Score=38.89 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=37.9
Q ss_pred cccccccCceeccCCCC-CCCCceEEEEecC---ceeEEEcCCHHHHHHHHHHHHHHHH
Q 046849 372 CRTVDLRTSAIKMDGED-TDLRLCFRIISPV---KTYTLQAETEADRMDWTSKITGVIA 426 (760)
Q Consensus 372 ~~~i~l~~~~v~~~~~~-~~~~~~F~i~~~~---~~~~lqA~s~~e~~~Wi~ai~~~i~ 426 (760)
.+..++..+.|...+.. .++-|.|.|.... ..|.|.|++.+|..+|+.+|+.+.-
T Consensus 853 rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~ 911 (1267)
T KOG1264|consen 853 RGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITW 911 (1267)
T ss_pred hccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHH
Confidence 33445555555443332 3556888876432 4599999999999999999998743
No 421
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=38.03 E-value=1.4e+02 Score=25.60 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=21.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 6 KLEDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKF 41 (760)
Q Consensus 6 ~~~DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~ 41 (760)
...|+|.+|..|+..-..+..+-+-+...++....+
T Consensus 24 t~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 24 TPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999998876666666555555555544443
No 422
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=36.94 E-value=91 Score=34.73 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=65.8
Q ss_pred eeEEEcCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhccCchHHHHHHhc
Q 046849 403 TYTLQAETEADRMDWTSKITGVIASLLNSDLLQQLRPSAKHIDGNDPFSTRDVPSLSSHCSLEDEVKANKSDSVSAILRQ 482 (760)
Q Consensus 403 ~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (760)
.+++.|+|++-.+.=|.+|++.|..++....... + ..+.-++.|..
T Consensus 206 H~~Isadt~eki~~Ai~vienli~~av~~~e~~n----------------------~------------l~~~Qlrela~ 251 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVIENLIQSAVSVPEGQN----------------------D------------LKRLQLRELAR 251 (554)
T ss_pred eEEEecchHHHHHHHHHHHHHHHHhhccCccccc----------------------c------------ccHHHHHHHHH
Confidence 3567899999999999999888876544321100 0 00111222222
Q ss_pred ------CCCCCccccCCCCC-CCeEEec---cceeEccchhh-HhhcCCCCccceeEeccCCC--CCCHHHHHHHHhhch
Q 046849 483 ------IPGNDLCAECSAPD-PDWASLN---LGILLCIECSG-VHRNLGVHISKVRSLTLDVK--VWEPTILDLFGSLGN 549 (760)
Q Consensus 483 ------~~~n~~C~dC~~~~-p~w~s~n---~g~~~C~~Csg-~Hr~lg~~~s~v~s~~ld~~--~w~~~~~~~~~~~GN 549 (760)
...|..|-.||..+ -+|.|-+ .-.-+|.-|-. -|-..++ ++.+-.|+.. .++++-..+|..+|.
T Consensus 252 lNgt~r~~d~~~c~~cg~~~H~q~~cp~r~~~~~n~c~~cg~~gH~~~dc---~~~~q~~~~~~~~~d~ey~~lm~e~~~ 328 (554)
T KOG0119|consen 252 LNGTLRDDDNRACRNCGSTGHKQYDCPGRIPNTTNVCKICGPLGHISIDC---KVNDQQMPMSSANFDREYASLMLELGH 328 (554)
T ss_pred hCCCCCccccccccccCCCccccccCCcccccccccccccCCcccccccC---CCcccccchhhhccCHHHHhhhccccc
Confidence 34568999999976 3665432 22238888864 3433332 3333333322 367788888988885
Q ss_pred HHHH
Q 046849 550 AYCN 553 (760)
Q Consensus 550 ~~~n 553 (760)
+.++
T Consensus 329 a~~~ 332 (554)
T KOG0119|consen 329 ATSL 332 (554)
T ss_pred hhcC
Confidence 5444
No 423
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=36.62 E-value=21 Score=26.36 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=20.8
Q ss_pred ccccCCCCCCCeEEeccceeEccch
Q 046849 488 LCAECSAPDPDWASLNLGILLCIEC 512 (760)
Q Consensus 488 ~C~dC~~~~p~w~s~n~g~~~C~~C 512 (760)
+|.+|+..+.-|+++..|.+.|.+-
T Consensus 1 ~C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 1 RCSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred CcccCCCcCCeEEecCCCCcccCCC
Confidence 5999999888999888888888554
No 424
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=36.61 E-value=39 Score=28.27 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=24.9
Q ss_pred cCCCCCccccCCCCCCCeEEeccceeEccchhh
Q 046849 482 QIPGNDLCAECSAPDPDWASLNLGILLCIECSG 514 (760)
Q Consensus 482 ~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg 514 (760)
....--.|..|+.+ ..--+..||+.|..|--
T Consensus 31 ~~~~~~~Cp~C~~~--~VkR~a~GIW~C~kCg~ 61 (89)
T COG1997 31 QQRAKHVCPFCGRT--TVKRIATGIWKCRKCGA 61 (89)
T ss_pred HHhcCCcCCCCCCc--ceeeeccCeEEcCCCCC
Confidence 34556789999998 56678899999999963
No 425
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=36.58 E-value=4.4e+02 Score=26.24 Aligned_cols=120 Identities=8% Similarity=0.055 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 27 LKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLIN 106 (760)
Q Consensus 27 l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~ 106 (760)
++.--..+...++.+.+++...|.++..+.- +-...+..|.+.+..+.-|.. -+..+..
T Consensus 7 ~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------a~~~~s~~l~~~~~~~~~~~~-~D~~v~~ 65 (215)
T cd07632 7 FEEDAGTLTDYTNQLLQAMQRVYGAQNEMCL--------------------ATQQLSKQLLAYEKQNFALGK-GDEEVIS 65 (215)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhHHHHHH--------------------HHHHHHHHHHHHHHhcCCCCC-CcHHHHH
Confidence 3444444555555556665555555444332 233444445554443333221 2345556
Q ss_pred HHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 107 RLTEFLTVDLHDAKESR-RRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTN 179 (760)
Q Consensus 107 pL~~f~~~~l~~~ke~r-k~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~ 179 (760)
.|+.|-+. |.+..+.+ .-++.++..+=.-+.+|. +|+=.++.+.|+.|...+=+|...|..
T Consensus 66 sL~kFs~~-L~el~~~h~~L~dqaq~sl~~pL~~F~-----------KeDl~~vKe~KK~FdK~Se~~d~AL~K 127 (215)
T cd07632 66 TLQYFAKV-VDELNVLHSELAKQLADTMVLPIIQFR-----------EKDLTEVSTLKDLFGIASNEHDLSMAK 127 (215)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66666432 44433222 223333333322222222 233334556677777777666655543
No 426
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=36.44 E-value=4.4e+02 Score=26.21 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhC---CCCCCCccccchhHHHHH---HHHHHHHHHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGG---GHDDPVSVSIGGPVISKF---ISAFRELATYKEL 95 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~---~~~d~~~~~~~~~~l~~f---~~~l~el~~~~~~ 95 (760)
++.+.+.+.++.+.+.+++++.....+..+...+.++-..|.. +.-++.... ......+ -.....+..+ ..
T Consensus 2 ~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~--~~~~~~~~~~~~~~~~~~~y-~~ 78 (216)
T cd07599 2 EQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGP--KESVGSHPAPESTLARLSRY-VK 78 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC--CcCcCCCCCcHHHHHHHHHH-HH
Confidence 4567788888888888888888878777776666666555542 233343211 0111111 1122333333 33
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHhhhhcCC-----Chhh-HHHHHHHHHHHHHHH
Q 046849 96 LRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQ---AREKFVSLKKNT-----RDDI-VAELEEDLQNSKSAF 166 (760)
Q Consensus 96 l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~---al~ky~s~~k~k-----~~~~-~~e~~~~l~~~Rk~f 166 (760)
.+..+...+..-+..|.+.-+.|+++.+..|....+.-.. .+.-|-+...+- +... ....+..|..+.+.+
T Consensus 79 ~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l 158 (216)
T cd07599 79 ALEELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHH
Confidence 3455555666667777777788888877777665554332 222222222111 1111 123455677888888
Q ss_pred HHHHHHHHHHHHHhh
Q 046849 167 EKSRFNLVSALTNIE 181 (760)
Q Consensus 167 ~~asldyv~~i~~l~ 181 (760)
..+.-+|-..=..|+
T Consensus 159 ~~a~~~y~~lN~~Lk 173 (216)
T cd07599 159 EEAKEEYEALNELLK 173 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766665444333
No 427
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=35.13 E-value=4.7e+02 Score=26.15 Aligned_cols=117 Identities=6% Similarity=0.088 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-HHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHHHH-HHHH
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFAD-ALEAFGGGHDDPVSVSIGGPVISKFISAFRELATYKE-LLRS 98 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~-~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~~~-~l~~ 98 (760)
-.-+..+++.++.+..+.+.|++....+..+...|.. +|.. .+.........+ +.++.......+.+..... .+..
T Consensus 15 ~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~-dd~~~~~~l~kf-~~~~~El~~l~~~L~~~~~~~I~~ 92 (215)
T cd07642 15 RTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCR-DDPDLGSAFLKF-SVFTKELTALFKNLVQNMNNIITF 92 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777888888888888776666666666666 3311 111111111111 1344555555555544433 4455
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 99 QVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREK 139 (760)
Q Consensus 99 ~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~k 139 (760)
++++.+-.-|..+..+-=+++-..++.||.+..+-+..--+
T Consensus 93 pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~ 133 (215)
T cd07642 93 PLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKE 133 (215)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 66666666777774333355888999999888766655433
No 428
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.64 E-value=4.4e+02 Score=25.64 Aligned_cols=39 Identities=5% Similarity=0.101 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 046849 13 FQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSG 51 (760)
Q Consensus 13 FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~ 51 (760)
++..+..+++.+..+.+...+++|.-..+...+.++...
T Consensus 9 i~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~ 47 (185)
T cd07628 9 IREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQ 47 (185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999988877776666665544
No 429
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.36 E-value=1.1e+03 Score=30.32 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 8 EDSPMFQKQLFSMEESAEELKDRCQRLYKGCKK 40 (760)
Q Consensus 8 ~DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~ 40 (760)
+|.|.|.++-..++.+++.++..+....+..+.
T Consensus 593 I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~ 625 (1201)
T PF12128_consen 593 IDVPDYAASEEELRERLEQAEDQLQSAEERQEE 625 (1201)
T ss_pred cCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467877777777777777777776666655444
No 430
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=33.91 E-value=24 Score=36.38 Aligned_cols=31 Identities=32% Similarity=0.627 Sum_probs=26.9
Q ss_pred CCCCCccccCCCCCC-CeEEeccceeEccchh
Q 046849 483 IPGNDLCAECSAPDP-DWASLNLGILLCIECS 513 (760)
Q Consensus 483 ~~~n~~C~dC~~~~p-~w~s~n~g~~~C~~Cs 513 (760)
.|.=..|+.||.+.+ ...|.-.|-++|.+|.
T Consensus 151 ~~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 151 GPNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred ccchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 355589999999866 6889999999999998
No 431
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=33.71 E-value=1.5e+02 Score=25.61 Aligned_cols=40 Identities=35% Similarity=0.381 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 9 DSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVA 48 (760)
Q Consensus 9 DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~ 48 (760)
|+-..|..+.+.|++.+.++..|.+|.+.-+.+...++++
T Consensus 2 ~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 2 DSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999998887774
No 432
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=32.03 E-value=5.7e+02 Score=26.17 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046849 20 MEESAEELKDRCQRLYKGCKKFTEALGVAC 49 (760)
Q Consensus 20 ~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~ 49 (760)
+.++...+++.++.+.+.+..++..+....
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~l 42 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISCL 42 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 345666677777777777777666444333
No 433
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=31.63 E-value=78 Score=30.70 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=39.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhh
Q 046849 698 SLLHLACQCGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLA 758 (760)
Q Consensus 698 TpLh~Aa~~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~ 758 (760)
.-|..|+..|-..-+--.|++|.+++. +.|..|+..+| ..|+.+++
T Consensus 145 ~hl~~a~~kgll~F~letlkygg~~~~------------~vls~Av~ynh---RkIL~yfi 190 (192)
T PF03158_consen 145 QHLEKAAAKGLLPFVLETLKYGGNVDI------------IVLSQAVKYNH---RKILDYFI 190 (192)
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCcccH------------HHHHHHHHhhH---HHHHHHhh
Confidence 357889999999999999999998652 68999999999 99988775
No 434
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=31.04 E-value=5.5e+02 Score=25.67 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAF 55 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~ 55 (760)
..+.+|.+...|.+-++++..+++.|.++...+..+...|
T Consensus 20 rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~ 59 (211)
T cd07612 20 NLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDI 59 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999998888877766554443
No 435
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=30.05 E-value=31 Score=26.28 Aligned_cols=33 Identities=27% Similarity=0.629 Sum_probs=25.7
Q ss_pred ccccCCCC-CCCeEEec-cceeEccchhhHhhcCC
Q 046849 488 LCAECSAP-DPDWASLN-LGILLCIECSGVHRNLG 520 (760)
Q Consensus 488 ~C~dC~~~-~p~w~s~n-~g~~~C~~Csg~Hr~lg 520 (760)
.|..|+.. -|.|-... -+..+|..|---.+..|
T Consensus 1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~ 35 (54)
T cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG 35 (54)
T ss_pred CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC
Confidence 49999995 57898765 88999999976555554
No 436
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.94 E-value=3.3e+02 Score=22.79 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGV 47 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~ 47 (760)
+..++.....++.++..++.+.+....+....++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~ 58 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNE 58 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666655554444333
No 437
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=29.09 E-value=40 Score=36.86 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=23.1
Q ss_pred eeEccchhhHhhcCCCCcc----cee-E--e-ccCCCCCC-HHHHHHHHhh
Q 046849 506 ILLCIECSGVHRNLGVHIS----KVR-S--L-TLDVKVWE-PTILDLFGSL 547 (760)
Q Consensus 506 ~~~C~~Csg~Hr~lg~~~s----~v~-s--~-~ld~~~w~-~~~~~~~~~~ 547 (760)
..+|+.|-.+=-.+|+|-. +|- . . -++. .|+ ++++.++.++
T Consensus 38 fdLCl~CFs~GaE~~~H~~~H~Yrim~~~s~~i~~~-~WtadEEilLLea~ 87 (438)
T KOG0457|consen 38 FDLCLQCFSVGAETGKHQNDHPYRIMDTNSFPILDP-SWTADEEILLLEAA 87 (438)
T ss_pred cchhHHHHhcccccCCCCCCCCceeecCCCCCCCCC-CCChHHHHHHHHHH
Confidence 4689999776666666621 111 1 1 1222 597 5677777654
No 438
>PF15518 L_protein_N: L protein N-terminus; PDB: 2XI5_D 2XI7_D.
Probab=28.50 E-value=1.9e+02 Score=27.61 Aligned_cols=60 Identities=17% Similarity=0.322 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 046849 131 HAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIM 196 (760)
Q Consensus 131 ~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~ 196 (760)
..|++.+.|-. .-+.++..++...+|..+|..|.- -++|..|+ ++.|.+.=+.+.++.++
T Consensus 4 ~~~~q~~~RI~---~~rda~vaKDI~~DLl~~RHnYFg--relC~~l~-IEYRNDVp~~DIlLd~~ 63 (183)
T PF15518_consen 4 QKYNQFRARIN---AARDAEVAKDIDVDLLMARHNYFG--RELCKALN-IEYRNDVPLDDILLDVL 63 (183)
T ss_dssp HHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHHHH--HHHHHHHT-----SS--HHHHHHHHS
T ss_pred HHHHHHHHHHH---hcCChHHhhhhhHHHHHHHhHHHH--HHHHHHhC-chhhcCCcHHHHHHHHc
Confidence 45666666643 336688888999999999999954 56666666 58888877777776544
No 439
>PHA00080 DksA-like zinc finger domain containing protein
Probab=28.42 E-value=24 Score=28.67 Aligned_cols=33 Identities=27% Similarity=0.686 Sum_probs=23.2
Q ss_pred CCCCccccCCCCCC--CeEEeccceeEccchhhHhh
Q 046849 484 PGNDLCAECSAPDP--DWASLNLGILLCIECSGVHR 517 (760)
Q Consensus 484 ~~n~~C~dC~~~~p--~w~s~n~g~~~C~~Csg~Hr 517 (760)
++...|-+||.+=| .|.. ..|+..|+.|...+-
T Consensus 29 ~~~~~C~~Cg~~Ip~~Rl~a-~P~~~~Cv~Cq~~~E 63 (72)
T PHA00080 29 PSATHCEECGDPIPEARREA-VPGCRTCVSCQEILE 63 (72)
T ss_pred CCCCEecCCCCcCcHHHHHh-CCCccCcHHHHHHHH
Confidence 45568999999644 4433 347888999987653
No 440
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.31 E-value=3.1e+02 Score=23.00 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 13 FQKQLFSMEESAEELKDRCQRLYKGCKKFTEALG 46 (760)
Q Consensus 13 FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~ 46 (760)
.++++..++++++.+.+.+.++++..+.+.+..+
T Consensus 31 ~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 31 VNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666555433
No 441
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=28.11 E-value=8.6 Score=26.44 Aligned_cols=29 Identities=31% Similarity=0.770 Sum_probs=17.0
Q ss_pred ccccCCCCCCCe-EEeccceeEccchhhHh
Q 046849 488 LCAECSAPDPDW-ASLNLGILLCIECSGVH 516 (760)
Q Consensus 488 ~C~dC~~~~p~w-~s~n~g~~~C~~Csg~H 516 (760)
.|.+||.+-|.= .-..-|..+|+.|.+.|
T Consensus 5 ~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 5 ICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp B-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 599999853311 12234788999998754
No 442
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=28.00 E-value=29 Score=24.19 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=10.8
Q ss_pred eEccchhhHhhcC
Q 046849 507 LLCIECSGVHRNL 519 (760)
Q Consensus 507 ~~C~~Csg~Hr~l 519 (760)
+-|+.||.+|-.-
T Consensus 2 yYCi~Cs~~h~e~ 14 (41)
T PF13119_consen 2 YYCINCSEIHHEK 14 (41)
T ss_pred EEEEEhHHhHHhh
Confidence 5799999999763
No 443
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=27.31 E-value=7e+02 Score=25.63 Aligned_cols=48 Identities=17% Similarity=0.035 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 046849 13 FQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALE 60 (760)
Q Consensus 13 FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~ 60 (760)
+=..+..+|.++|.-..||..|-...++-.+--.++......++..+.
T Consensus 3 l~eQlkcld~~~e~~~~lLqDlqdF~RrRAeIE~EYS~~L~KLa~~f~ 50 (253)
T cd07683 3 LVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFM 50 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999988855443555555556665553
No 444
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=26.53 E-value=98 Score=31.02 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHcC-CCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 706 CGNLVMLELLIQFG-ADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 706 ~g~~~~v~lLL~~G-Advn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..+..+.+..|.+| ++||. +--+-+.|.|-|+=|+..++ .+++.+|++
T Consensus 227 ~a~~kvL~~Fi~~Glv~vN~---~F~~~NSGdtMLDNA~Ky~~---~emi~~Llk 275 (284)
T PF06128_consen 227 SASYKVLEYFINRGLVDVNK---KFQKVNSGDTMLDNAMKYKN---SEMIAFLLK 275 (284)
T ss_pred CCcHHHHHHHHhccccccch---hhhccCCcchHHHhHHhcCc---HHHHHHHHH
Confidence 33566888888888 46775 33456789999999999999 999999875
No 445
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=26.11 E-value=6.7e+02 Score=25.05 Aligned_cols=89 Identities=9% Similarity=0.037 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCC--CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 29 DRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDD--PVSVSIGGPVISKFISAFRELATYKELLRSQVEHVLIN 106 (760)
Q Consensus 29 ~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d--~~~~~~~~~~l~~f~~~l~el~~~~~~l~~~~~~~~~~ 106 (760)
..++++.-..+.++....++..+..+++.+-..|.+.... +..... ..-..+|.+|.++...+..+ +..+-.
T Consensus 3 ~i~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s--~~s~~lG~~L~~~s~~~r~i----~~~~~~ 76 (219)
T PF08397_consen 3 NIMEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNS--RGSKELGDALMQISEVHRRI----ENELEE 76 (219)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred hHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccccHHHHHHHHHHHHHHH----HHHHHH
Confidence 4455555555666666555555555555555555543211 111110 12456666676666655444 334444
Q ss_pred HHHHHHHhhhHHHHHHH
Q 046849 107 RLTEFLTVDLHDAKESR 123 (760)
Q Consensus 107 pL~~f~~~~l~~~ke~r 123 (760)
-.+.|..+.|.|....-
T Consensus 77 ~~~~~~~~li~pLe~~~ 93 (219)
T PF08397_consen 77 VFKAFHSELIQPLEKKL 93 (219)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666655333
No 446
>smart00030 CLb CLUSTERIN Beta chain.
Probab=25.91 E-value=6.4e+02 Score=24.82 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 108 LTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDD--IVAELEEDLQNSKSAFEKSRFNLV 174 (760)
Q Consensus 108 L~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~--~~~e~~~~l~~~Rk~f~~asldyv 174 (760)
+..=+++.|..+|+.|---|+..+++-..+...-..+++|+.. .++|.+..|.+...-=..+.++++
T Consensus 20 vd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~alW 88 (206)
T smart00030 20 INKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMALW 88 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677788899999999999999877766655444443321 234555566655543334444333
No 447
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=25.51 E-value=23 Score=28.86 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=22.7
Q ss_pred CCccccCCCCCCCe-EEeccceeEccchhhHhhc
Q 046849 486 NDLCAECSAPDPDW-ASLNLGILLCIECSGVHRN 518 (760)
Q Consensus 486 n~~C~dC~~~~p~w-~s~n~g~~~C~~Csg~Hr~ 518 (760)
...|.|||.+=|.= .-..-|+..|+.|...+-.
T Consensus 34 ~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E~ 67 (73)
T PRK13715 34 VYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 (73)
T ss_pred cccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHHH
Confidence 35899999965522 1223488999999876543
No 448
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=24.53 E-value=55 Score=24.13 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=26.3
Q ss_pred CCccccCCCCCCCeEEecccee-EccchhhHhh
Q 046849 486 NDLCAECSAPDPDWASLNLGIL-LCIECSGVHR 517 (760)
Q Consensus 486 n~~C~dC~~~~p~w~s~n~g~~-~C~~Csg~Hr 517 (760)
+..|.=|......++....|+. +|..|+.-..
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~ 34 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLL 34 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHH
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhc
Confidence 3578889988888999999999 9999997553
No 449
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.50 E-value=7.9e+02 Score=25.33 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 046849 21 EESAEELKDRCQRLYKGCKKFTEALGVACSGD 52 (760)
Q Consensus 21 e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~ 52 (760)
.+++..+++.++-+.+.+..++..+...-+.+
T Consensus 14 ~edl~~iEkrvD~~k~~~~~i~kkl~~~LQpn 45 (257)
T cd07620 14 TEDLVLVEQRVEPAKKAAQLIHKKLQGCLQSQ 45 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56888899999999999988887766655543
No 450
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.42 E-value=1.2e+03 Score=27.25 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 10 SPMFQKQLFSMEESAEELKDRCQRLYKGCKK 40 (760)
Q Consensus 10 SP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~ 40 (760)
+-+|=.++..+|+++..++....++......
T Consensus 156 ~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~ 186 (560)
T PF06160_consen 156 SFSYGPAIEELEKQLENIEEEFSEFEELTEN 186 (560)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3445555666666666666666666665444
No 451
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.35 E-value=6.9e+02 Score=24.58 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhch-------HHHHHHHHHhh
Q 046849 14 QKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGD-------SAFADALEAFG 63 (760)
Q Consensus 14 Ra~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~-------~~~~~~l~~~~ 63 (760)
+..+..|++.+..+++....++|.-+.+...+.++..+. ..+..+|..++
T Consensus 20 ~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~ 76 (200)
T cd07624 20 NEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVS 76 (200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 667888999999999999999988888777766665543 33455555554
No 452
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.89 E-value=46 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.560 Sum_probs=21.1
Q ss_pred CCccccCCCCCCCeEEeccceeEccchh
Q 046849 486 NDLCAECSAPDPDWASLNLGILLCIECS 513 (760)
Q Consensus 486 n~~C~dC~~~~p~w~s~n~g~~~C~~Cs 513 (760)
-+.|..||..... ..+-.++.|..|-
T Consensus 28 Sq~C~~CG~~~~~--~~~~r~~~C~~Cg 53 (69)
T PF07282_consen 28 SQTCPRCGHRNKK--RRSGRVFTCPNCG 53 (69)
T ss_pred ccCccCccccccc--ccccceEEcCCCC
Confidence 3679999998776 6677899999984
No 453
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=23.85 E-value=7.8e+02 Score=25.02 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHH-----HHH
Q 046849 15 KQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAF-----REL 89 (760)
Q Consensus 15 a~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l-----~el 89 (760)
..+..|.+..+.-+.+-++|.+.++++....+... ..|..++..+...++..- .+=..++..| +.|
T Consensus 23 el~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~---Gtl~~aw~~~~~e~e~~a------~~H~~la~~L~~ev~~~l 93 (239)
T cd07658 23 ELATVLQERAELELNYAKGLSKLSGKLSKASKSVS---GTLSSAWTCVAEEMESEA------DIHRNLGSALTEEAIKPL 93 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CcHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 34556666666667788888888887654433221 334444433332211100 0111111111 222
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------------hhhc--CCChhh
Q 046849 90 ATYKELLR---SQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFV-------------SLKK--NTRDDI 151 (760)
Q Consensus 90 ~~~~~~l~---~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~-------------s~~k--~k~~~~ 151 (760)
..++..+. ..+... +..+++-+...++.....|+.|.....+.|.+..++. ...+ ...+..
T Consensus 94 ~~~~~~~~k~rK~~~~~-~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~ 172 (239)
T cd07658 94 RQVLDEQHKTRKPVENE-VDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKE 172 (239)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccccccchhh
Confidence 22222211 111111 1222222333344455689999999888888887763 1111 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 152 VAELEEDLQNSKSAFEKSRFNLVSALTNIEA 182 (760)
Q Consensus 152 ~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~ 182 (760)
+......+..++..-..+--+|...+..++.
T Consensus 173 ~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~ 203 (239)
T cd07658 173 DEKLEAKRKKGEESRLKAENEYYTCCVRLER 203 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444566666665543
No 454
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=49 Score=27.85 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=25.6
Q ss_pred HHHhcCCCCCccccCCCC-------CC-Ce---------EEeccceeEccchh
Q 046849 478 AILRQIPGNDLCAECSAP-------DP-DW---------ASLNLGILLCIECS 513 (760)
Q Consensus 478 ~~~~~~~~n~~C~dC~~~-------~p-~w---------~s~n~g~~~C~~Cs 513 (760)
....+.++-..|++||.+ -| +. .+-.+|-.+|..|.
T Consensus 26 h~~kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~ 78 (93)
T COG2174 26 HYEKKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCV 78 (93)
T ss_pred eeeeccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHH
Confidence 445677888999999983 11 11 24468999999996
No 455
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=23.41 E-value=63 Score=23.49 Aligned_cols=31 Identities=19% Similarity=0.488 Sum_probs=23.1
Q ss_pred cCCCCCccccCCCCCCCeEEeccceeEccchh
Q 046849 482 QIPGNDLCAECSAPDPDWASLNLGILLCIECS 513 (760)
Q Consensus 482 ~~~~n~~C~dC~~~~p~w~s~n~g~~~C~~Cs 513 (760)
+.|..-.|..||+...-+.. +.+.+-|..|.
T Consensus 14 RW~~g~~CP~Cg~~~~~~~~-~~~~~~C~~C~ 44 (46)
T PF12760_consen 14 RWPDGFVCPHCGSTKHYRLK-TRGRYRCKACR 44 (46)
T ss_pred cCCCCCCCCCCCCeeeEEeC-CCCeEECCCCC
Confidence 35667889999998554433 37899999985
No 456
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=23.22 E-value=4.8e+02 Score=32.45 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=28.8
Q ss_pred EEEEecCceeEEEcCCHHHHHHHHHHHHHHHHHhhhh
Q 046849 395 FRIISPVKTYTLQAETEADRMDWTSKITGVIASLLNS 431 (760)
Q Consensus 395 F~i~~~~~~~~lqA~s~~e~~~Wi~ai~~~i~~~~~~ 431 (760)
|.+..-+..|+|.|++..+++.|++.|..+-...+..
T Consensus 656 ~~~ga~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~ 692 (1029)
T KOG4305|consen 656 YLGGARGASFTLYAESLNGRDQWVEKIKQAQKRSLER 692 (1029)
T ss_pred eeccccceEEEeeccchHHhhhHHhhhhHHHHhhhhh
Confidence 3334445789999999999999999999886655443
No 457
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=22.57 E-value=9.6e+02 Score=25.64 Aligned_cols=225 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCC--CccccchhHHHHHHHH
Q 046849 11 PMFQKQLFSMEESAEE---LKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDP--VSVSIGGPVISKFISA 85 (760)
Q Consensus 11 P~FRa~l~~~e~~l~~---l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~--~~~~~~~~~l~~f~~~ 85 (760)
|.|..-.. +..+.. ++.|++.+....+++...+... -..+++.+..|-....|. ....--++........
T Consensus 71 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 145 (320)
T TIGR01834 71 PQFANGFA--PGAVQGYLQLQTWIEQYEATTQALQGDMDGQ---GQCYIKELMRFWQLPLSGWQSSVSPLGPLPTGDLHA 145 (320)
T ss_pred HHHHhhcc--cccccchhhHHHHHHHHHHHHHHHHhcccch---hhhHHHHHHHHHcCCcchhhhhcccccccchhhHHh
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHH------
Q 046849 86 FRELATY--KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEE------ 157 (760)
Q Consensus 86 l~el~~~--~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~------ 157 (760)
+-++... .+.+...+...+..|.--.-.+.-..+...=+.+.+++..+-.....+..+.-+.-.....+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~L~~P~lG~~Re~q~~~~~l~~a~~~yq~a~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~ 225 (320)
T TIGR01834 146 WLDLNNLYGDQLYRKNLSSFLSMPALGYSREMQSQLQRLFRDWMEYQQAMADYQLLEADIGYKSFAALMSDLLARAKSGK 225 (320)
T ss_pred HhhhccccHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q ss_pred --H-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHH
Q 046849 158 --D-LQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKI--------EPYVHQVLTYAQQ 226 (760)
Q Consensus 158 --~-l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~--------~~~~~~l~~~~~~ 226 (760)
. ..+.+.....++=+.+..+-.-. +|.+..-.++.++..|=.+.-++.+.. ..-++++...+..
T Consensus 226 ~v~s~re~~d~W~~~ae~~~~e~~~S~-----efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~E 300 (320)
T TIGR01834 226 PVKTAKALYDLWVIAAEEAYAEVFASE-----ENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQ 300 (320)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 046849 227 SKEVANVEQDKLAKRIQEFRTQA 249 (760)
Q Consensus 227 ~r~~~~~~~~~l~~~~~~~~~~~ 249 (760)
+|. +.+.|.+.+.++.+.+
T Consensus 301 LrR----~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 301 LRR----EVKSLKKRLGDLEANP 319 (320)
T ss_pred HHH----HHHHHHHHHHHhhhcC
No 458
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=22.36 E-value=2.4e+02 Score=21.60 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHcCCCccccCCCCCCCCCCCcHHHHHHHcCCCChHHHHHHhhc
Q 046849 706 CGNLVMLELLIQFGADINMRARPSIKDGGGLSSLERAMEMGAITDEELFILLAE 759 (760)
Q Consensus 706 ~g~~~~v~lLL~~GAdvn~~Ad~~~~d~~G~TpL~~A~~~g~~~~~eiv~lL~~ 759 (760)
..++..+++|-++|.| -=..|.-||..|+....++..++++-|.+
T Consensus 10 ~~~p~~a~vf~~~gID---------fCCgG~~~L~eA~~~~~ld~~~vl~~L~~ 54 (56)
T PF04405_consen 10 AEDPRAARVFRKYGID---------FCCGGNRSLEEACEEKGLDPEEVLEELNA 54 (56)
T ss_pred HHChHHHHHHHHcCCc---------ccCCCCchHHHHHHHcCCCHHHHHHHHHH
Confidence 3467788899999988 45689999999999988888888887743
No 459
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=22.23 E-value=1.1e+03 Score=26.18 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC---
Q 046849 78 VISKFISAFRELATYKELLRSQV--EHVLI----NRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTR--- 148 (760)
Q Consensus 78 ~l~~f~~~l~el~~~~~~l~~~~--~~~~~----~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~--- 148 (760)
.+..++..+.........+-.+. +..++ .-|.+.++..+..+++-++.|+++-+..+ +..+...
T Consensus 108 ~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le-------~~~~~~~~~~ 180 (447)
T KOG2751|consen 108 NTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLE-------QQNQDVSEED 180 (447)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCcccchHH
Confidence 45666666655555555543332 22222 22334444444444444444444444333 3333211
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 046849 149 ----DDIVAELEEDLQNSKSAFEKSRFNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKL 205 (760)
Q Consensus 149 ----~~~~~e~~~~l~~~Rk~f~~asldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~ 205 (760)
.+.+.+.+.+|....+.-...--|+...+.+++.++- ++.+....|...+..|-.+
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~-~~~e~~~~~~~ey~~~~~q 240 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAE-RLNEEEDQYWREYNNFQRQ 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 1223344555666666666666677777777776654 6777777666665555443
No 460
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=22.16 E-value=82 Score=23.31 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046849 8 EDSPMFQKQLFSMEESAEELKDRCQRLY 35 (760)
Q Consensus 8 ~DSP~FRa~l~~~e~~l~~l~~~l~kl~ 35 (760)
.-.|.||+.+-..|.-++.+.++++.|.
T Consensus 26 ianpaf~qkiplietgcekm~dyieelk 53 (62)
T PF10653_consen 26 IANPAFQQKIPLIETGCEKMTDYIEELK 53 (62)
T ss_pred hcCHHHHhccchhhhhhHHHHHHHHHHh
Confidence 3479999999999999998888887764
No 461
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.79 E-value=1.6e+03 Score=28.06 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHH
Q 046849 152 VAELEEDLQNSKSAFEKSRFNLVSALTNIE-AKKKYEFLESISAIMDVHL 200 (760)
Q Consensus 152 ~~e~~~~l~~~Rk~f~~asldyv~~i~~l~-~~k~~e~l~~l~~~~~a~~ 200 (760)
+.++...|...|+.|...=-.|-..-+.++ .++..++++-.+.-++++.
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666555555554444444 3344566776666666665
No 462
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=21.59 E-value=3e+02 Score=29.48 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHH-----HHHhhCCCCCCCccccchhHHHHH
Q 046849 8 EDSPMFQKQLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADA-----LEAFGGGHDDPVSVSIGGPVISKF 82 (760)
Q Consensus 8 ~DSP~FRa~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~d~~~~~~~~~~l~~f 82 (760)
..+|.+|..-..-.+-+..+++|+++.-. .......|+.. |.+|.++..+-.. +.+|.-+
T Consensus 32 ~~~~~~~~lr~iKkeIL~Li~t~i~~~~~-----------~~~v~~~~i~~l~~~vL~DY~~~~p~~r~----~evL~l~ 96 (319)
T PF08767_consen 32 TKTPKVRLLRTIKKEILKLIETFISKAED-----------PEEVANNFIPPLLDAVLGDYQNSVPDARE----PEVLSLM 96 (319)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHT-S------------HHHHHHHTHHHHHHHHHHHHHHS-GGGS-----HHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhccCC-----------HHHHHHHHHHHHHHHHHHHHhcCCccccC----hhHHHHH
Confidence 34667776666666666666666654431 11112222322 2345544433332 5678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 046849 83 ISAFRELATYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQ 135 (760)
Q Consensus 83 ~~~l~el~~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~ 135 (760)
+..++.+.......+..+-..+.+|.-..+.++...|=+.|..|-+.-...-.
T Consensus 97 ~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~ 149 (319)
T PF08767_consen 97 ATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINE 149 (319)
T ss_dssp HHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHH
Confidence 88888777755555667778888999999999999999999988877665543
No 463
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.49 E-value=7.6e+02 Score=24.05 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhchH---------HHHHHHHHhhC
Q 046849 13 FQKQLFSMEESAE-ELKDRCQRLYKGCKKFTEALGVACSGDS---------AFADALEAFGG 64 (760)
Q Consensus 13 FRa~l~~~e~~l~-~l~~~l~kl~k~~k~~~~~~~~~~~~~~---------~~~~~l~~~~~ 64 (760)
+++.+..|+.-+. .+++...++++....+...+.++-..-. .+...|..+|.
T Consensus 9 ~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~ 70 (187)
T cd07629 9 IEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQ 70 (187)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Confidence 5778888888885 6888888888877776655555443322 35556666663
No 464
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=21.42 E-value=59 Score=23.86 Aligned_cols=25 Identities=20% Similarity=0.627 Sum_probs=18.4
Q ss_pred ccccCCCCCCCeEEeccceeEccchh
Q 046849 488 LCAECSAPDPDWASLNLGILLCIECS 513 (760)
Q Consensus 488 ~C~dC~~~~p~w~s~n~g~~~C~~Cs 513 (760)
.|.=|+...+. --.=+|.|+|.+|-
T Consensus 1 ~CiiC~~~~~~-GI~I~~~fIC~~CE 25 (46)
T PF10764_consen 1 KCIICGKEKEE-GIHIYGKFICSDCE 25 (46)
T ss_pred CeEeCCCcCCC-CEEEECeEehHHHH
Confidence 47778887765 33347899999996
No 465
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. To regulate gene expression, AR interacts with a palindrome of the core sequence 5'-TGTTCT-3' with a 3-bp spacer. It also binds to the direct repeat 5'-TGTTCT-3' hexamer in some androgen controlled genes. AR is activated by the androgenic hormones, testosterone or dihydrotestosterone, which are responsible for primary and for secondary male characteristics, respectively. The primary mechanism of action of ARs is by direct regulation of gene transcription. The binding of androgen results in a conformational change in the androgen receptor which causes its transport from the cytosol into the cell nucleus, and dimerization. The receptor dimer binds to a hormone response element of AR regulated genes and modul
Probab=21.33 E-value=61 Score=27.03 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=24.9
Q ss_pred CCCccccCCCCCCCeEEeccceeEccchhhHhhc
Q 046849 485 GNDLCAECSAPDPDWASLNLGILLCIECSGVHRN 518 (760)
Q Consensus 485 ~n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~ 518 (760)
....|.=||.+.. ...+|+.-|..|.+..|-
T Consensus 2 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (82)
T cd07173 2 PQKTCLICGDEAS---GCHYGALTCGSCKVFFKR 32 (82)
T ss_pred CCCCCeecCCcCc---ceEECcchhhhHHHHHHH
Confidence 3567999997654 468999999999998875
No 466
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.14 E-value=8.8e+02 Score=24.62 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHHHH---HHHHHH
Q 046849 22 ESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELATY---KELLRS 98 (760)
Q Consensus 22 ~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~~~---~~~l~~ 98 (760)
.++.+++=-++.+.-.++++..++..+...-..++.+..+||.....-.... ..+.| +.++..+..- ...+..
T Consensus 18 ~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E-~~~~L---~~a~~kLg~v~~~v~dl~~ 93 (230)
T cd07625 18 TELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE-THHGL---GNLYEKFGKVLTAVGDIDS 93 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccchH---HHHHHHHHHHHHHHhhHHH
Confidence 4677888889999999999988889988888999999999986543322222 12233 3344444432 333333
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046849 99 QVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSL 143 (760)
Q Consensus 99 ~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~ 143 (760)
--...-..-|..-++..+..+...|..|.....-|.....--..+
T Consensus 94 ~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~ 138 (230)
T cd07625 94 IQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNT 138 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555777788888999999999999888887655443333
No 467
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.73 E-value=1.4e+03 Score=26.89 Aligned_cols=170 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhchHHHHHHHHHhhCCCCCCCccccchhHHHHHHHHHHHHH
Q 046849 12 MFQKQLFSMEESAEELKDRCQRLYKGCKK-FTEALGVACSGDSAFADALEAFGGGHDDPVSVSIGGPVISKFISAFRELA 90 (760)
Q Consensus 12 ~FRa~l~~~e~~l~~l~~~l~kl~k~~k~-~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~l~~f~~~l~el~ 90 (760)
++|.....+-+.-..|...|.++++...+ +.+..+.........+..+..+. .+++ ++...
T Consensus 51 ~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q--------------~~~~----~~~~~ 112 (611)
T KOG2398|consen 51 VMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQ--------------SKKK----AKDTY 112 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh--------------hHHH----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 046849 91 TYKELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFVSLKKNTRDDIVAELEEDLQNSKSAFEKSR 170 (760)
Q Consensus 91 ~~~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~s~~k~k~~~~~~e~~~~l~~~Rk~f~~as 170 (760)
.+.......+......+...+....-++....+-.-.++...|....++|. .+|+.|.+-.
T Consensus 113 ~~~~~~~~~~~~~~e~e~~~~~~k~~~~~~k~~~~i~~~~~~y~~~~~~~~-------------------~vr~~w~~~~ 173 (611)
T KOG2398|consen 113 EVLCAKSNYLHRCQEKESLKEKEKRKKELAKAELKIKEAREEYRSLVAKLE-------------------KVRKDWEQEM 173 (611)
T ss_pred HHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046849 171 FNLVSALTNIEAKKKYEFLESISAIMDVHLRYFKLGFDLLSKIEPYVH 218 (760)
Q Consensus 171 ldyv~~i~~l~~~k~~e~l~~l~~~~~a~~~ff~~g~~~~~~~~~~~~ 218 (760)
-+.+.+.++++..+...+=+.|..|.+....-...-.+.++.++..+.
T Consensus 174 ~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le 221 (611)
T KOG2398|consen 174 TDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLE 221 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhc
No 468
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=20.66 E-value=8.8e+02 Score=24.47 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=28.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhchHHHHHHHHHhh
Q 046849 6 KLEDSPMFQKQLFSMEESAEELKDRCQR------LYKGCKKFTEALGVACSGDSAFADALEAFG 63 (760)
Q Consensus 6 ~~~DSP~FRa~l~~~e~~l~~l~~~l~k------l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~ 63 (760)
++.=.|.-|+.+-.+ +.++.++...+. .--....|++...++ -....|..+|..+|
T Consensus 33 ~LqPNp~~R~~~~~~-~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~l-g~dS~~G~aL~~~G 94 (223)
T cd07614 33 YLQPNPASRAKLTML-NTVSKIRGQVKNPGYPQSEGLLGETMIRYGKEL-GDESNFGDALLDAG 94 (223)
T ss_pred HhCCCchHhHHHHHH-HHHHHHhccccCCCCCChHhHHHHHHHHHHhhC-CCCChHHHHHHHHH
Confidence 344467777776666 334433322222 233444466653333 33456777776665
No 469
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=20.63 E-value=66 Score=34.30 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=20.9
Q ss_pred CCccccCCCCCCCeEEeccceeEccchhhHh
Q 046849 486 NDLCAECSAPDPDWASLNLGILLCIECSGVH 516 (760)
Q Consensus 486 n~~C~dC~~~~p~w~s~n~g~~~C~~Csg~H 516 (760)
...|.+||.... -.-..-|-.||.+|--|-
T Consensus 11 ~~~Cp~Cg~~~i-v~d~~~Ge~vC~~CG~Vl 40 (310)
T PRK00423 11 KLVCPECGSDKL-IYDYERGEIVCADCGLVI 40 (310)
T ss_pred CCcCcCCCCCCe-eEECCCCeEeecccCCcc
Confidence 457999997432 223468999999997554
No 470
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=20.60 E-value=1.1e+03 Score=25.50 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHhh-CCCCCCCccccchhHHHHHHHHHHHH--HHH
Q 046849 16 QLFSMEESAEELKDRCQRLYKGCKKFTEALGVACSGDSAFADALEAFG-GGHDDPVSVSIGGPVISKFISAFREL--ATY 92 (760)
Q Consensus 16 ~l~~~e~~l~~l~~~l~kl~k~~k~~~~~~~~~~~~~~~~~~~l~~~~-~~~~d~~~~~~~~~~l~~f~~~l~el--~~~ 92 (760)
.|..++.+|+.|...+..--...|.++.. .+++.....=+..|-.|- +....+. +.++..|-++...- ...
T Consensus 3 ~l~~l~~~i~~L~~k~~~~f~~lk~fi~e-~~f~~~i~~~~~~L~~~m~d~~~~~~-----~~s~~~F~~~y~~~~Pl~l 76 (345)
T PF05075_consen 3 KLKELEKKIKELSEKMSAHFDDLKAFITE-NNFYMEIISPASTLMKYMRDCLKHPG-----KESIENFREAYEKNSPLEL 76 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHhcCCHHHH
Confidence 45667777777777777776666665554 444432222222222222 1111121 35788888887654 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046849 93 KELLRSQVEHVLINRLTEFLTVDLHDAKESRRRFDKSIHAYDQAREKFV 141 (760)
Q Consensus 93 ~~~l~~~~~~~~~~pL~~f~~~~l~~~ke~rk~fek~~~~Yd~al~ky~ 141 (760)
.-.|+.-++....+||.--++.+- ...+..|+|=..-.++.+..++
T Consensus 77 ~y~l~s~L~~~~TNPl~~am~ad~---~~~~~tf~kW~~ii~~vl~q~l 122 (345)
T PF05075_consen 77 AYTLMSLLEQKSTNPLKMAMDADK---LKTKATFEKWKKIIDGVLGQLL 122 (345)
T ss_pred HHHHHHHHcccCCCHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHH
Confidence 334555566667778877775432 2478889999999999888875
No 471
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=20.39 E-value=36 Score=25.28 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=19.3
Q ss_pred ccccCCCCCCCeEEeccceeEccchhhHhhcC
Q 046849 488 LCAECSAPDPDWASLNLGILLCIECSGVHRNL 519 (760)
Q Consensus 488 ~C~dC~~~~p~w~s~n~g~~~C~~Csg~Hr~l 519 (760)
.|+.||+..- ......-.-|..|+ ||-|
T Consensus 8 ~C~~Cg~~~~--~~~~~~~irCp~Cg--~rIl 35 (49)
T COG1996 8 KCARCGREVE--LDQETRGIRCPYCG--SRIL 35 (49)
T ss_pred EhhhcCCeee--hhhccCceeCCCCC--cEEE
Confidence 6999999751 12256667899998 6665
No 472
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.12 E-value=1.1e+02 Score=30.92 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=35.7
Q ss_pred ccccCCCC--CCCeEEeccceeEccchhhHhhcCCCCccc--eeEeccCCCCCCHHHHHHHHhhc
Q 046849 488 LCAECSAP--DPDWASLNLGILLCIECSGVHRNLGVHISK--VRSLTLDVKVWEPTILDLFGSLG 548 (760)
Q Consensus 488 ~C~dC~~~--~p~w~s~n~g~~~C~~Csg~Hr~lg~~~s~--v~s~~ld~~~w~~~~~~~~~~~G 548 (760)
.|.-|+-. .-++-.+++++++|..|.+.=-.=-+++++ ||.+.|+..-|+ ..-.+|...|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~i~l~~slp~-~ik~~F~d~~ 68 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRIIQLNRSLPT-DIKSYFADPP 68 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCccccccccceeeeeecccccch-hHHHHccCcH
Confidence 57777763 235678899999999999742221123222 788888864333 3333443333
Done!