BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046850
(686 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 112 bits (279), Expect = 9e-25, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 59/75 (78%)
Query: 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNY 337
P P+ FRCPISL+LM+DPVIV++G TY+R+SI +W+++GH TCPKS + L+H L PNY
Sbjct: 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62
Query: 338 TLKSLLHQWCQDNNV 352
LKSL+ WC+ N +
Sbjct: 63 VLKSLIALWCESNGI 77
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Query: 408 PEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD 467
P++Q +AA+ L +A +N +++ + GA+P V LL S ++E AV AL N++ D
Sbjct: 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA-GD 190
Query: 468 NNKI--LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPAL 525
+ K L++A GA+ ++ L + NA T+ + RP A+PAL
Sbjct: 191 SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP-ALPAL 249
Query: 526 VGLLREXXXXXXXXXXXXLFNLAVYNANKASVVV-AGAVPLLIELLM 571
L+ L L+ +K V+ AG P L+ELL+
Sbjct: 250 ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%)
Query: 408 PEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD 467
P++Q +AA+ L +A +N +++ + GA+P V LL S ++E AV AL N++ D
Sbjct: 94 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA-GD 152
Query: 468 NNKI--LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPAL 525
+ K L++A GA+ ++ L + NA T+ + RP A+PAL
Sbjct: 153 SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP-ALPAL 211
Query: 526 VGLLREXXXXXXXXXXXXLFNLAVYNANKASVVV-AGAVPLLIELLM 571
L+ L L+ +K V+ AG P L+ELL+
Sbjct: 212 ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 258
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYT 338
+IPD IS +LMR+P I SG TYDR I + + H P + L LIPN
Sbjct: 1 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 60
Query: 339 LKSLLHQWCQDN 350
+K ++ + +N
Sbjct: 61 MKEVIDAFISEN 72
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTL 339
IPD IS +LMR+P I SG TYDR I + + H P + L LIPN +
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162
Query: 340 KSLLHQWCQDN 350
K ++ + Q+N
Sbjct: 163 KEVIDAFIQEN 173
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 14/217 (6%)
Query: 361 SSTDLERSNNKGK-LCENAIDHISAMKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELR 419
+STD E + L E A SA+KA DA + E LV L E+Q +AA L
Sbjct: 12 TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGV--EVLVKLLTSTDSEVQKEAARALA 69
Query: 420 LLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI-LIMAAGA 478
+A + + I +AG + LV LL+S D +Q+ A AL N++ + I I+ AG
Sbjct: 70 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGG 129
Query: 479 IDSIIEVLQSGKTMEARENAAATIFSLSMIDDC-KVMI--GGRPRAIPALVGLLREXXXX 535
++ ++++L S + +E A A S D+ K ++ GG + LV LL
Sbjct: 130 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGG----VEVLVKLLTSTDSE 185
Query: 536 XXXXXXXXLFNLAV--YNANKASVVVAGAVPLLIELL 570
L N+A +A KA +V AG V +L +LL
Sbjct: 186 VQKEAARALANIASGPTSAIKA-IVDAGGVEVLQKLL 221
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 323 KSGQRLIHMALIPNYTLKSLLHQWCQDNNVPLVESASSSSTDLERSNNKGKLCEN-AIDH 381
++ + L ++A P+ +K+++ + V L+ +STD E + N A
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLL-----TSTDSEVQKEAARALANIASGP 117
Query: 382 ISAMKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFL 441
A+KA DA + E LV L E+Q +AA L +A + + I +AG + L
Sbjct: 118 DEAIKAIVDAGGV--EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 175
Query: 442 VTLLSSHDPRIQENAVTALLNLSIFDNNKI-LIMAAGAIDSIIEVLQ 487
V LL+S D +Q+ A AL N++ + I I+ AG +EVLQ
Sbjct: 176 VKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG----VEVLQ 218
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 323 KSGQRLIHMALIPNYTLKSLLHQWCQDNNVPLVESASSSSTDLERSNNKGKLCEN-AIDH 381
++ + L ++A P+ +K+++ + V L+ +STD E + N A
Sbjct: 105 EAARALANIASGPDEAIKAIVDAGGVEVLVKLL-----TSTDSEVQKEAARALANIASGP 159
Query: 382 ISAMKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFL 441
A+KA DA + E LV L E+Q +AA L +A + I +AG + L
Sbjct: 160 DEAIKAIVDAGGV--EVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVL 217
Query: 442 VTLLSSHDPRIQENAVTALLNL 463
LL+S D +Q+ A AL N+
Sbjct: 218 QKLLTSTDSEVQKEAQRALENI 239
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 21/195 (10%)
Query: 385 MKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL 444
++A DA + A LV L+ + +I +A + L +A G + + + +AGA+P LV L
Sbjct: 47 IQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Query: 445 LSSHDPRIQENAVTALLNLSIFDNNKI-LIMAAGAIDSIIEVLQSGKTMEARENAAATIF 503
LSS + +I + A+ AL N++ N +I ++ AGA+ +++++L S +E ++
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE----ALW 160
Query: 504 SLSMIDDCKVMIGGRPR--------AIPALVGLLREXXXXXXXXXXXXLFNLAV-YNANK 554
+LS I GG + A+PALV LL L N+A N K
Sbjct: 161 ALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215
Query: 555 ASVVVAGAVPLLIEL 569
+V AGA+ L +L
Sbjct: 216 QAVKEAGALEKLEQL 230
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 385 MKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL 444
++A DA + A LV L+ + +I +A + L +A G + + + +AGA+P LV L
Sbjct: 131 IQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188
Query: 445 LSSHDPRIQENAVTALLNLSIFDN-NKILIMAAGAIDSIIEVLQS 488
LSS + +I + A+ AL N++ N K + AGA++ +E LQS
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK-LEQLQS 232
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTL 339
IPD IS +LM +P I SG TYDR I + + H P + L LIPN +
Sbjct: 10 IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69
Query: 340 KSLLHQWCQDN 350
K ++ + Q+N
Sbjct: 70 KEVIDAFIQEN 80
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYT 338
+IPD IS +LMR+P I SG TYDR I + + H P + L LIPN
Sbjct: 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 263
Query: 339 LKSLLHQWCQDN 350
+K ++ + +N
Sbjct: 264 MKEVIDAFISEN 275
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 373 KLCENAIDHISAMKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRII 432
KL + A ++A DA + A LV L+ + +I +A + L +A G + + +
Sbjct: 35 KLSQIASGGNEQIQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92
Query: 433 AEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI-LIMAAGAIDSIIEVLQS 488
+AGA+P LV LLSS + +I + A+ AL N++ N +I ++ AGA+ +++++L S
Sbjct: 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 385 MKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL 444
++A DA + A LV L+ + +I +A + L +A G + + + +AGA+P LV L
Sbjct: 89 IQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 445 LSSHDPRIQENAVTALLNLSIFDN-NKILIMAAGAIDSIIEVLQS 488
LSS + +I + A+ AL N++ N K + AGA + +E LQS
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA-EPALEQLQS 190
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 385 MKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL 444
++A DA + A LV L+ + +I +A + L +A G + ++ + EAGA P L L
Sbjct: 131 IQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 445 LSSHDPRIQENAVTAL 460
SS + +IQ+ A AL
Sbjct: 189 QSSPNEKIQKEAQEAL 204
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 373 KLCENAIDHISAMKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRII 432
KL + A ++A DA + A LV L+ + +I +A + L +A G + + +
Sbjct: 35 KLSQIASGGNEQIQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92
Query: 433 AEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI-LIMAAGAIDSIIEVLQS 488
+AGA+P LV LLSS + +I + A+ AL N++ N +I ++ AGA+ +++++L S
Sbjct: 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 385 MKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL 444
++A DA + A LV L+ + +I +A + L +A G + + + +AGA+P LV L
Sbjct: 89 IQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 445 LSSHDPRIQENAVTALLNLSIFDN-NKILIMAAGAIDSIIEVLQS 488
LSS + +I + A+ AL N++ N K + AGA++ +E LQS
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK-LEQLQS 190
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 385 MKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL 444
++A DA + A LV L+ + +I +A + L +A G + + + +AGA+P LV L
Sbjct: 47 IQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Query: 445 LSSHDPRIQENAVTALLNLSIFDNNKI-LIMAAGAIDSIIEVLQS 488
LSS + +I + A+ AL N++ N +I ++ AGA+ +++++L S
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 385 MKAAADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL 444
++A DA + A LV L+ + +I +A + L +A G + + + +AGA+P LV L
Sbjct: 89 IQAVIDAGALPA--LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 445 LSSHDPRIQENAVTALLNLSIFDN-NKILIMAAGAIDSIIEVLQS 488
LSS + +I + A+ AL N++ N K + AGA++ +E LQS
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK-LEQLQS 190
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLS 464
+Q ++A+ L +A RI+ +AGA+P + LLSS +QE AV AL N++
Sbjct: 78 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA 132
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 544 LFNLAVYNANKASVVV-AGAVPLLIELLMDDKAGITDDXXXXXXXXXG----CREGLEEI 598
L N+A N+ + +V+ AGAVP+ IELL + + + G CR + +
Sbjct: 86 LTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR---DYV 142
Query: 599 RKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCK 632
C +L PLL + N++ L LC+
Sbjct: 143 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 176
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLS 464
+Q ++A+ L +A RI+ +AGA+P + LLSS +QE AV AL N++
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA 135
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 544 LFNLAVYNANKASVVV-AGAVPLLIELLMDDKAGITDDXXXXXXXXXG----CREGLEEI 598
L N+A N+ + +V+ AGAVP+ IELL + + + G CR + +
Sbjct: 89 LTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR---DYV 145
Query: 599 RKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCK 632
C +L PLL + N++ L LC+
Sbjct: 146 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIP-N 336
P + ++ CPI L +R+ V GH + + I + I H CP + L+ L P N
Sbjct: 20 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 79
Query: 337 YTLKSLL 343
+ + +L
Sbjct: 80 FAKREIL 86
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIP-N 336
P + ++ CPI L +R+ V GH + + I + I H CP + L+ L P N
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72
Query: 337 YTLKSLL 343
+ + +L
Sbjct: 73 FAKREIL 79
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIP-N 336
P + ++ CPI L +R+ V GH + + I + I H CP + L+ L P N
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDN 72
Query: 337 YTLKSLL 343
+ + +L
Sbjct: 73 FAKREIL 79
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSI-AQWINSGHHTCPKSGQRLIHMALIPNY 337
+ PDEFR P+ LM DPV + SG DR+ I +NS T P + Q L L P
Sbjct: 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP--TDPFNRQTLTESMLEPVP 82
Query: 338 TLKSLLHQWCQD 349
LK + W ++
Sbjct: 83 ELKEQIQAWMRE 94
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSI-AQWINSGHHTCPKSGQRLIHMALIPNY 337
+ PDEFR P+ LM DPV + SG DR+ I +NS T P + Q L L P
Sbjct: 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP--TDPFNRQMLTESMLEPVP 67
Query: 338 TLKSLLHQWCQDNN 351
LK + W ++
Sbjct: 68 ELKEQIQAWMREKQ 81
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF--D 467
++S AA L+ L + + + IP LV LL + A AL N+S
Sbjct: 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123
Query: 468 NNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMI 515
+NKI I + +++ +L+ + M+ E T+++LS D K+ I
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI 171
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336
++ CPI L +R+ V GH + + I + I H CP + L+ L P+
Sbjct: 6 KYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 59
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 458
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 519 CPANHAPLREQGAIPRLVQLLV 540
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 383 CPANHAPLREQGAIPRLVQLLV 404
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 273 SQSVLPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQW 313
S L N+ E C + L+ +++PVI+ GH + + I +W
Sbjct: 5 SSGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRW 45
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 282 DEFRCPISLDLMRDPVIVASGH-TYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLK 340
DEF PI LM DPV++ S T DR++IA+ + S T P + L + PN LK
Sbjct: 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELK 79
Query: 341 SLLHQW 346
+ +W
Sbjct: 80 EKIQRW 85
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 269 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 328
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 329 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 388
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 389 CPANHAPLREQGAIPRLVQLLV 410
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 264 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 323
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 324 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 383
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 384 CPANHAPLREQGAIPRLVQLLV 405
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 270 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 329
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 330 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 389
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 390 CPANHAPLREQGAIPRLVQLLV 411
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 280 IPDEFRCPISLDLMRDPVIV-ASGHTYDRNSI-AQWINSGHHTCPKSGQRLIHM-ALIPN 336
IPDE C I D+M D V++ G++Y I + S HTCP Q + ALI N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69
Query: 337 YTLKSLLHQW 346
L+ ++ +
Sbjct: 70 KFLRQAVNNF 79
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 251 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 310
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 311 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 370
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 371 CPANHAPLREQGAIPRLVQLLV 392
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 267 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 326
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 327 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 386
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 387 CPANHAPLREQGAIPRLVQLLV 408
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 253 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 312
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 313 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 372
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 373 CPANHAPLREQGAIPRLVQLLV 394
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 268 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 327
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 328 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 387
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 388 CPANHAPLREQGAIPRLVQLLV 409
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 268 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 327
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 328 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 387
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 388 CPANHAPLREQGAIPRLVQLLV 409
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 251 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 310
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 311 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 370
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 371 CPANHAPLREQGAIPRLVQLLV 392
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 255 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 314
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 315 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 374
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 375 CPANHAPLREQGAIPRLVQLLV 396
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 264 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 323
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 324 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 383
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 384 CPANHAPLREQGAIPRLVQLLV 405
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 381 HISAMKAAADAVKMTAEFLVGKLAMGSPE-----IQSQAAY--ELRLLAKTGMDNRRIIA 433
H + KA AV FLVG L S I+S + L T D+R+I+
Sbjct: 317 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 376
Query: 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIEVLQSGKTM 492
E + L+ L SH I NA L NLS + ++ + GA+ + ++ S M
Sbjct: 377 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 436
Query: 493 EARENAAA 500
A +AAA
Sbjct: 437 IAMGSAAA 444
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIE-VLQSGKTME 493
G + LV LL S D + A L NL+ + NK+++ G I++++ VL++G +
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325
Query: 494 ARENAAATIFSLSMIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAV 549
E A + L+ M R +P +V LL L NLA+
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385
Query: 550 YNANKASVVVAGAVPLLIELLM 571
AN A + GA+P L++LL+
Sbjct: 386 CPANHAPLREQGAIPRLVQLLV 407
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 381 HISAMKAAADAVKMTAEFLVGKLAMGSPE-----IQSQAAY--ELRLLAKTGMDNRRIIA 433
H + KA AV FLVG L S I+S + L T D+R+I+
Sbjct: 203 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 262
Query: 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIEVLQSGKTM 492
E + L+ L SH I NA L NLS + ++ + GA+ + ++ S M
Sbjct: 263 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 322
Query: 493 EARENAAA 500
A +AAA
Sbjct: 323 IAMGSAAA 330
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 381 HISAMKAAADAVKMTAEFLVGKLAMGSPE-----IQSQAAY--ELRLLAKTGMDNRRIIA 433
H + KA AV FLVG L S I+S + L T D+R+I+
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260
Query: 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIEVLQSGKTM 492
E + L+ L SH I NA L NLS + ++ + GA+ + ++ S M
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 320
Query: 493 EARENAAA 500
A +AAA
Sbjct: 321 IAMGSAAA 328
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 381 HISAMKAAADAVKMTAEFLVGKLAMGSPE-----IQSQAA--YELRLLAKTGMDNRRIIA 433
H + KA AV FLVG L S I+S + L T D+R+I+
Sbjct: 210 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 269
Query: 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIEVLQSGKTM 492
E + L+ L SH I NA L NLS + ++ + GA+ + ++ S
Sbjct: 270 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKX 329
Query: 493 EARENAAA 500
A +AAA
Sbjct: 330 IAXGSAAA 337
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 381 HISAMKAAADAVKMTAEFLVGKLAMGSPE-----IQSQAAY--ELRLLAKTGMDNRRIIA 433
H + KA AV FLVG L S I+S + L T D+R+I+
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260
Query: 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIEVLQSGKTM 492
E + L+ L SH I NA L NLS + ++ + GA+ + ++ S M
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 320
Query: 493 EARENAAA 500
A +AAA
Sbjct: 321 IAMGSAAA 328
>pdb|2J0O|A Chain A, Shigella Flexneri Ipad
pdb|2J0O|B Chain B, Shigella Flexneri Ipad
Length = 318
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 61 EIQETKCPLPPSSILCLTELFSVIRRV-----KLLIQGCKDGSSLWGLMQIELVSNQFYV 115
+I+ T P SS+ L + IR K L Q +SL +I L S+Q +
Sbjct: 17 DIKTTTSSHPVSSLTMLNDTLHNIRTTNQALKKELSQKTLTKTSL---EEIALHSSQISM 73
Query: 116 LVKEMGRALDILPLSLLNITADIREQVELLHRQAKRAELFVDAKELHRR 164
V + + LDIL I D RE LLH K AEL D HR
Sbjct: 74 DVNKSAQLLDILSRHEYPINKDARE---LLHSAPKEAELDGDQMISHRE 119
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 381 HISAMKAAADAVKMTAEFLVGKLAMGSPE-----IQSQAA--YELRLLAKTGMDNRRIIA 433
H + KA AV FLVG L S I+S + L T D+R+I+
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260
Query: 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIEVLQSGKTM 492
E + L+ L SH I NA L NLS + ++ + GA+ + ++ S
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKX 320
Query: 493 EARENAAA 500
A +AAA
Sbjct: 321 IAXGSAAA 328
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 276 VLPNIPDEFRCPISLDLMRDPVIVASGHTYDR-----NSIAQWINSGHHTCP 322
+L N+ +E CPI L+L+ P+ + GH++ + N ++ G +CP
Sbjct: 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCP 63
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIA----QWINS--GHHTCPKSG 325
N+ +E CPI L+L+ +P+ + GH+ R I + + S G +CP G
Sbjct: 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 280 IPDEFRCPISLDLMRDPVIV-ASGHTYDRNSI-AQWINSGHHTCPKSGQR 327
IPDE C I D+M D V++ G++Y I + S HTCP Q
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQW--INSGHHTCP 322
+ +E CPI LD+++ PV + GH + I Q + G CP
Sbjct: 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQW--INSGHHTCP 322
+ +E CPI LD+++ PV + GH + I Q + G CP
Sbjct: 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 276 VLPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHT-----CP 322
VL I +E CPI L+L+++PV H++ R I S +T CP
Sbjct: 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCP 63
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSI 310
++PDEF P+ +M+DPVI+ AS DR++I
Sbjct: 901 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTI 933
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSI 310
++PDEF P+ +M+DPVI+ AS DR++I
Sbjct: 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTI 919
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 51/234 (21%)
Query: 347 CQDNNVPLVESASSSSTDLERSNNKGKLCENAIDHISAMKAAADAVKMTAEFLVGKLA-- 404
C N +VE+ + L ++ +L +N + + + AA + E L+G L
Sbjct: 158 CSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGXEGLLGTLVQL 216
Query: 405 MGSPEIQ--SQAAYELRLLAKTGMDNRRIIAEAGAIPFLV-TLLSSHDPR-IQENAVTAL 460
+GS +I + AA L L N+ + + G I LV T+L + D I E A+ AL
Sbjct: 217 LGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICAL 276
Query: 461 LNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPR 520
+L+ + E +NA + L ++ V + P
Sbjct: 277 RHLT----------------------SRHQEAEXAQNAVRLHYGLPVV----VKLLHPPS 310
Query: 521 AIP---ALVGLLREXXXXXXXXXXXXLFNLAVYNANKASVVVAGAVPLLIELLM 571
P A VGL+R NLA+ AN A + GA+P L++LL+
Sbjct: 311 HWPLIKATVGLIR---------------NLALCPANHAPLREQGAIPRLVQLLV 349
>pdb|3R9V|A Chain A, Cocrystal Structure Of Proteolytically Truncated Form Of
Ipad From Shigella Flexneri Bound To Deoxycholate
pdb|3R9V|B Chain B, Cocrystal Structure Of Proteolytically Truncated Form Of
Ipad From Shigella Flexneri Bound To Deoxycholate
Length = 286
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 70 PPSSILCLTELFSVIRRV-----KLLIQGCKDGSSLWGLMQIELVSNQFYVLVKEMGRAL 124
P SS+ L + IR K L Q +SL +I L S+Q + V + + L
Sbjct: 4 PVSSLTMLNDTLHNIRTTNQALKKELSQKTLTKTSL---EEIALHSSQISMDVNKSAQLL 60
Query: 125 DILPLSLLNITADIREQVELLHRQAKRAELFVDAKELHRR 164
DIL + I D RE LLH K AEL D HR
Sbjct: 61 DILSRNEYPINKDARE---LLHSAPKEAELDGDQMISHRE 97
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 204 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 263
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 264 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 322
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 323 RQDQIQQVVNHGLVPFLVGVLSK 345
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 284 FRCPISLDLMRDPVI-VASGHTYDRNSIAQWINSGHHT-----CPKSG 325
F CPI+ + M+ PV GHTY+ ++I + I S CP+ G
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIG 55
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 178 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 237
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 238 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 296
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 297 RQDQIQQVVNHGLVPFLVGVLSK 319
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 247 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 306
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 365
Query: 509 DDCKVMIGGRPRAIPALVGLL 529
++ +P LVG+L
Sbjct: 366 RQDQIQQVVNHGLVPFLVGVL 386
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 178 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 237
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 238 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 296
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 297 RQDQIQQVVNHGLVPFLVGVLSK 319
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 45/189 (23%)
Query: 428 NRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLS--------------IFDN----- 468
N+ I EAG + L L+S+ PR+ +N + L NLS I N
Sbjct: 221 NKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVD 280
Query: 469 ---------------------NKILIMAAGAIDSIIE-VLQSGKTMEARENAAATIFSLS 506
NK L+ ++++I +L++G + E A + L+
Sbjct: 281 DVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLT 340
Query: 507 MIDDCKVMIGGRPR---AIPALVGLLREXXXXXXXXXXXXLF-NLAVYNANKASVVVAGA 562
M R IPA+V LL + L NLA+ AN A + A
Sbjct: 341 SRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAV 400
Query: 563 VPLLIELLM 571
+P L++LL+
Sbjct: 401 IPRLVQLLV 409
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 173 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 232
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 233 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 291
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 292 RQDQIQQVVNHGLVPFLVGVLSK 314
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 177 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 236
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 237 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 295
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 296 RQDQIQQVVNHGLVPFLVGVLSK 318
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 177 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 236
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 237 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 295
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 296 RQDQIQQVVNHGLVPFLVGVLSK 318
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 173 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 232
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 233 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 291
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 292 RQDQIQQVVNHGLVPFLVGVLSK 314
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 178 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 237
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 238 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 296
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 297 RQDQIQQVVNHGLVPFLVGVLSK 319
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSI 310
++PDEF P+ + +DPVI+ AS DR++I
Sbjct: 901 DVPDEFLDPLXYTIXKDPVILPASKXNIDRSTI 933
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRI--IAEAGAIPFLVTLLSS 447
DAV+ LV L PE+ + + + L T N RI + + G +P LV LL +
Sbjct: 179 DAVEQILPTLVRLLHHDDPEVLADTCWAISYL--TDGPNERIGMVVKTGVVPQLVKLLGA 236
Query: 448 HDPRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARE 496
+ I A+ A+ N+ + D +++ AGA+ +L + KT +E
Sbjct: 237 SELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKE 286
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 302
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 303 RQDQIQQVVNHGLVPFLVGVLSK 325
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 212 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 271
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 272 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 330
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 331 RQDQIQQVVNHGLVPFLVGVLSK 353
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 214 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 273
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 274 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 332
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 333 RQDQIQQVVNHGLVPFLVGVLSK 355
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 346
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 347 RQDQIQQVVNHGLVPFLVGVLSK 369
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 346
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 347 RQDQIQQVVNHGLVPFLVGVLSK 369
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Query: 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD 449
DAV+ LV L PE+ + + + + L + ++ + G +P LV LL + +
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 450 PRIQENAVTALLNL-SIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508
I A+ A+ N+ + D ++ AGA+ +L + KT +E A T+ +++
Sbjct: 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE-ATWTMSNITAG 346
Query: 509 DDCKVMIGGRPRAIPALVGLLRE 531
++ +P LVG+L +
Sbjct: 347 RQDQIQQVVNHGLVPFLVGVLSK 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,608,941
Number of Sequences: 62578
Number of extensions: 608183
Number of successful extensions: 1848
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1746
Number of HSP's gapped (non-prelim): 121
length of query: 686
length of database: 14,973,337
effective HSP length: 105
effective length of query: 581
effective length of database: 8,402,647
effective search space: 4881937907
effective search space used: 4881937907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)