Query 046850
Match_columns 686
No_of_seqs 454 out of 2822
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 6E-28 1.3E-32 258.2 22.5 281 394-677 109-394 (514)
2 PLN03200 cellulose synthase-in 100.0 2.1E-26 4.5E-31 279.1 32.3 281 392-676 11-312 (2102)
3 PLN03200 cellulose synthase-in 100.0 3.3E-26 7.2E-31 277.4 31.9 282 393-679 445-767 (2102)
4 COG5064 SRP1 Karyopherin (impo 99.9 7.8E-26 1.7E-30 224.4 16.0 281 394-677 114-399 (526)
5 KOG4224 Armadillo repeat prote 99.9 2.5E-24 5.4E-29 215.5 20.5 276 394-676 167-446 (550)
6 KOG4224 Armadillo repeat prote 99.9 3.2E-24 7E-29 214.7 19.3 275 395-675 127-404 (550)
7 KOG0166 Karyopherin (importin) 99.9 8.8E-23 1.9E-27 218.7 24.4 284 394-680 152-440 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 8.5E-21 1.8E-25 188.8 17.8 278 394-676 157-443 (526)
9 PF05804 KAP: Kinesin-associat 99.8 2.6E-17 5.7E-22 186.2 30.2 278 393-678 289-651 (708)
10 PF05804 KAP: Kinesin-associat 99.7 4.1E-16 9E-21 176.5 27.1 255 407-674 262-518 (708)
11 PF04564 U-box: U-box domain; 99.7 9E-18 2E-22 136.5 5.4 72 280-351 1-72 (73)
12 KOG1048 Neural adherens juncti 99.6 4.2E-14 9E-19 156.8 26.6 280 394-677 233-685 (717)
13 KOG4199 Uncharacterized conser 99.6 1.8E-13 3.9E-18 136.9 25.0 274 396-674 147-442 (461)
14 PF04826 Arm_2: Armadillo-like 99.6 7.5E-14 1.6E-18 141.1 22.8 191 394-590 12-205 (254)
15 KOG2122 Beta-catenin-binding p 99.6 3E-14 6.6E-19 163.1 20.1 286 390-680 286-605 (2195)
16 KOG2122 Beta-catenin-binding p 99.5 8.9E-14 1.9E-18 159.3 15.4 228 408-636 365-605 (2195)
17 KOG4199 Uncharacterized conser 99.5 4.4E-12 9.6E-17 127.1 23.6 268 405-680 118-407 (461)
18 smart00504 Ubox Modified RING 99.5 1.9E-14 4.2E-19 114.0 5.5 63 283-346 1-63 (63)
19 PF04826 Arm_2: Armadillo-like 99.5 2.4E-12 5.2E-17 130.2 19.4 194 433-633 9-206 (254)
20 PF10508 Proteasom_PSMB: Prote 99.4 6.9E-11 1.5E-15 132.6 27.3 279 393-675 76-365 (503)
21 KOG1048 Neural adherens juncti 99.3 9.4E-11 2E-15 130.4 22.5 247 394-644 275-694 (717)
22 KOG1222 Kinesin associated pro 99.3 1E-09 2.2E-14 114.8 25.3 277 393-677 303-664 (791)
23 PF10508 Proteasom_PSMB: Prote 99.2 2.1E-09 4.5E-14 120.7 26.3 273 397-678 41-321 (503)
24 KOG4500 Rho/Rac GTPase guanine 99.2 6.7E-10 1.5E-14 114.9 20.2 266 394-662 87-460 (604)
25 cd00020 ARM Armadillo/beta-cat 99.2 2.5E-10 5.5E-15 102.2 13.3 117 472-590 2-120 (120)
26 cd00020 ARM Armadillo/beta-cat 99.2 3E-10 6.6E-15 101.7 12.6 117 431-549 2-120 (120)
27 PF15227 zf-C3HC4_4: zinc fing 99.1 2.9E-11 6.4E-16 86.5 3.2 39 286-324 1-42 (42)
28 KOG1222 Kinesin associated pro 99.1 2.3E-08 5.1E-13 104.8 24.1 256 396-659 262-602 (791)
29 PRK09687 putative lyase; Provi 99.1 1.6E-08 3.4E-13 104.7 23.0 236 389-672 18-278 (280)
30 TIGR00599 rad18 DNA repair pro 99.0 2.9E-10 6.2E-15 120.5 6.0 72 277-349 20-91 (397)
31 PLN03208 E3 ubiquitin-protein 99.0 2.1E-10 4.6E-15 108.4 3.9 60 278-337 13-87 (193)
32 KOG4500 Rho/Rac GTPase guanine 99.0 3.5E-08 7.5E-13 102.4 19.9 280 395-678 224-521 (604)
33 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.1E-08 2.5E-13 108.1 15.2 232 437-672 56-310 (312)
34 KOG0946 ER-Golgi vesicle-tethe 98.9 4.2E-07 9.1E-12 100.8 25.1 279 395-680 23-350 (970)
35 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.3E-07 2.7E-12 100.2 17.9 224 396-622 57-304 (312)
36 KOG0287 Postreplication repair 98.8 1.2E-09 2.6E-14 109.0 2.0 70 279-349 19-88 (442)
37 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.5E-09 7.5E-14 74.9 3.0 38 286-324 1-39 (39)
38 PRK09687 putative lyase; Provi 98.8 2.2E-07 4.8E-12 96.2 17.5 194 437-673 24-218 (280)
39 KOG2160 Armadillo/beta-catenin 98.8 9.2E-07 2E-11 91.3 21.1 185 404-590 93-282 (342)
40 KOG3678 SARM protein (with ste 98.8 2.6E-07 5.6E-12 96.7 16.6 265 393-676 179-452 (832)
41 KOG0168 Putative ubiquitin fus 98.8 3.8E-07 8.2E-12 101.8 18.6 257 395-659 168-438 (1051)
42 cd00256 VATPase_H VATPase_H, r 98.7 2.1E-06 4.5E-11 92.8 23.3 273 399-674 106-423 (429)
43 PRK13800 putative oxidoreducta 98.7 3.5E-06 7.5E-11 101.5 26.8 228 394-673 652-896 (897)
44 PF14835 zf-RING_6: zf-RING of 98.7 4.9E-09 1.1E-13 79.8 1.5 59 282-343 6-65 (65)
45 KOG0823 Predicted E3 ubiquitin 98.7 9.8E-09 2.1E-13 98.8 2.8 58 280-337 44-103 (230)
46 PF13445 zf-RING_UBOX: RING-ty 98.6 1.7E-08 3.7E-13 72.1 2.5 36 286-322 1-43 (43)
47 KOG0317 Predicted E3 ubiquitin 98.6 1.9E-08 4.1E-13 99.6 3.6 55 277-332 233-287 (293)
48 PRK13800 putative oxidoreducta 98.6 3.2E-06 7E-11 101.8 23.1 217 394-674 621-865 (897)
49 PF00097 zf-C3HC4: Zinc finger 98.6 3.2E-08 6.9E-13 70.9 3.4 39 286-324 1-41 (41)
50 KOG4646 Uncharacterized conser 98.5 4.9E-07 1.1E-11 79.9 9.1 153 476-630 15-168 (173)
51 KOG2160 Armadillo/beta-catenin 98.5 8.6E-06 1.9E-10 84.2 19.6 184 447-633 94-283 (342)
52 PF13920 zf-C3HC4_3: Zinc fing 98.5 7.2E-08 1.6E-12 72.2 3.1 47 282-329 1-48 (50)
53 KOG0168 Putative ubiquitin fus 98.5 2.4E-06 5.2E-11 95.6 16.1 216 392-614 209-437 (1051)
54 COG5432 RAD18 RING-finger-cont 98.5 5.7E-08 1.2E-12 95.2 3.0 69 279-348 21-89 (391)
55 PHA02929 N1R/p28-like protein; 98.5 9.8E-08 2.1E-12 94.6 4.2 48 281-329 172-227 (238)
56 KOG0320 Predicted E3 ubiquitin 98.5 1E-07 2.2E-12 87.7 3.2 55 279-334 127-183 (187)
57 PF13639 zf-RING_2: Ring finge 98.4 1E-07 2.2E-12 69.3 2.2 40 285-325 2-44 (44)
58 KOG4646 Uncharacterized conser 98.4 1.5E-06 3.2E-11 77.0 9.7 130 437-568 17-148 (173)
59 KOG2973 Uncharacterized conser 98.4 5E-05 1.1E-09 76.6 21.0 273 396-677 5-316 (353)
60 PF01602 Adaptin_N: Adaptin N 98.4 1.3E-05 2.9E-10 91.2 19.8 256 392-677 112-370 (526)
61 PF01602 Adaptin_N: Adaptin N 98.4 2.5E-05 5.5E-10 88.9 21.5 253 395-676 153-407 (526)
62 cd00256 VATPase_H VATPase_H, r 98.4 3.8E-05 8.3E-10 83.2 21.3 225 394-621 53-297 (429)
63 cd00162 RING RING-finger (Real 98.4 3.3E-07 7.2E-12 66.6 3.8 43 285-327 1-44 (45)
64 PF11789 zf-Nse: Zinc-finger o 98.3 1.8E-07 3.8E-12 71.5 1.7 44 282-325 10-55 (57)
65 KOG2171 Karyopherin (importin) 98.3 2.1E-05 4.7E-10 91.5 18.9 259 394-656 348-615 (1075)
66 KOG0311 Predicted E3 ubiquitin 98.3 1.6E-07 3.6E-12 95.2 0.1 70 278-347 38-109 (381)
67 KOG2177 Predicted E3 ubiquitin 98.3 5.6E-07 1.2E-11 95.4 3.9 71 279-352 9-79 (386)
68 smart00184 RING Ring finger. E 98.3 8.7E-07 1.9E-11 62.0 3.5 39 286-324 1-39 (39)
69 KOG2171 Karyopherin (importin) 98.2 0.00019 4.1E-09 83.9 23.4 273 396-675 161-503 (1075)
70 PHA02926 zinc finger-like prot 98.2 8.9E-07 1.9E-11 84.6 3.5 50 280-329 167-230 (242)
71 TIGR00570 cdk7 CDK-activating 98.2 1.7E-06 3.7E-11 88.2 5.6 62 282-343 2-72 (309)
72 KOG0978 E3 ubiquitin ligase in 98.2 4.8E-05 1E-09 85.6 16.5 55 281-335 641-695 (698)
73 PTZ00429 beta-adaptin; Provisi 98.1 0.00093 2E-08 77.9 25.9 258 395-676 69-326 (746)
74 KOG2023 Nuclear transport rece 98.1 6.8E-05 1.5E-09 82.3 15.4 272 394-679 128-466 (885)
75 KOG1293 Proteins containing ar 98.1 0.00017 3.6E-09 79.6 17.9 198 403-602 340-546 (678)
76 PF14634 zf-RING_5: zinc-RING 98.1 3.1E-06 6.7E-11 61.4 2.9 41 285-326 1-44 (44)
77 PF05536 Neurochondrin: Neuroc 98.0 0.00011 2.4E-09 83.1 16.7 191 478-674 6-211 (543)
78 KOG2759 Vacuolar H+-ATPase V1 98.0 0.00062 1.3E-08 71.7 20.6 275 396-674 116-436 (442)
79 KOG2164 Predicted E3 ubiquitin 98.0 2.6E-06 5.6E-11 91.1 3.1 70 283-352 186-263 (513)
80 COG5574 PEX10 RING-finger-cont 98.0 2.9E-06 6.2E-11 83.3 2.9 50 280-329 212-262 (271)
81 PF05536 Neurochondrin: Neuroc 98.0 0.00024 5.2E-09 80.3 18.2 234 437-676 6-261 (543)
82 KOG2759 Vacuolar H+-ATPase V1 98.0 0.00035 7.6E-09 73.5 17.8 234 396-633 158-439 (442)
83 KOG2660 Locus-specific chromos 98.0 4.1E-06 8.9E-11 84.9 2.9 67 279-346 11-82 (331)
84 KOG0946 ER-Golgi vesicle-tethe 97.9 0.00023 4.9E-09 79.7 16.2 215 437-657 23-264 (970)
85 KOG2973 Uncharacterized conser 97.9 0.0012 2.6E-08 66.9 19.8 233 394-633 44-316 (353)
86 KOG1059 Vesicle coat complex A 97.9 0.00059 1.3E-08 75.8 18.4 261 390-677 177-444 (877)
87 PTZ00429 beta-adaptin; Provisi 97.9 0.0038 8.3E-08 72.9 25.6 214 394-629 32-245 (746)
88 COG5222 Uncharacterized conser 97.9 1.5E-05 3.3E-10 78.7 4.8 66 284-349 275-342 (427)
89 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0028 6.2E-08 68.2 22.7 270 397-674 28-362 (371)
90 KOG1293 Proteins containing ar 97.8 0.00079 1.7E-08 74.4 17.9 225 405-634 388-629 (678)
91 PF00514 Arm: Armadillo/beta-c 97.8 2E-05 4.4E-10 56.2 3.6 40 425-464 1-40 (41)
92 KOG1789 Endocytosis protein RM 97.8 0.0031 6.8E-08 72.5 21.3 261 394-659 1771-2142(2235)
93 PF12678 zf-rbx1: RING-H2 zinc 97.7 3.4E-05 7.4E-10 62.6 3.9 40 285-325 21-73 (73)
94 TIGR02270 conserved hypothetic 97.7 0.0042 9.2E-08 67.7 20.3 221 394-676 54-296 (410)
95 KOG4642 Chaperone-dependent E3 97.6 4.2E-05 9.1E-10 74.5 4.0 74 279-352 207-280 (284)
96 KOG3678 SARM protein (with ste 97.6 0.0006 1.3E-08 72.1 12.5 172 429-603 173-349 (832)
97 KOG4413 26S proteasome regulat 97.6 0.0068 1.5E-07 61.8 19.1 235 394-632 128-377 (524)
98 PF10165 Ric8: Guanine nucleot 97.6 0.0043 9.4E-08 68.8 19.7 263 414-678 1-339 (446)
99 KOG0212 Uncharacterized conser 97.6 0.0017 3.8E-08 70.5 15.6 236 395-636 209-448 (675)
100 PF00514 Arm: Armadillo/beta-c 97.6 9.5E-05 2.1E-09 52.7 4.2 40 509-549 2-41 (41)
101 PF12348 CLASP_N: CLASP N term 97.6 0.00069 1.5E-08 68.2 11.8 181 403-590 16-206 (228)
102 KOG0297 TNF receptor-associate 97.6 4.7E-05 1E-09 82.5 3.3 66 280-346 18-85 (391)
103 KOG4159 Predicted E3 ubiquitin 97.6 5.8E-05 1.3E-09 80.7 3.9 73 276-349 77-154 (398)
104 KOG4413 26S proteasome regulat 97.5 0.0059 1.3E-07 62.3 17.0 246 396-644 84-343 (524)
105 PF14664 RICTOR_N: Rapamycin-i 97.5 0.0093 2E-07 64.3 19.6 250 417-674 6-267 (371)
106 KOG2734 Uncharacterized conser 97.4 0.021 4.6E-07 60.6 20.8 239 413-657 103-371 (536)
107 KOG2023 Nuclear transport rece 97.4 0.0014 3.1E-08 72.3 12.6 271 392-678 172-507 (885)
108 KOG2734 Uncharacterized conser 97.4 0.046 9.9E-07 58.2 23.1 269 394-674 125-433 (536)
109 PF13646 HEAT_2: HEAT repeats; 97.4 0.00082 1.8E-08 56.4 8.2 87 396-503 1-88 (88)
110 COG5152 Uncharacterized conser 97.4 6.2E-05 1.3E-09 70.2 1.0 59 283-343 196-254 (259)
111 PF12348 CLASP_N: CLASP N term 97.2 0.0014 2.9E-08 66.1 9.5 185 490-680 19-210 (228)
112 COG1413 FOG: HEAT repeat [Ener 97.2 0.053 1.2E-06 57.9 22.2 184 394-629 43-239 (335)
113 KOG0212 Uncharacterized conser 97.2 0.011 2.4E-07 64.5 16.2 237 435-677 166-407 (675)
114 PF10165 Ric8: Guanine nucleot 97.2 0.017 3.7E-07 64.1 18.2 236 405-641 43-346 (446)
115 KOG1813 Predicted E3 ubiquitin 97.2 0.00018 4E-09 71.8 2.3 65 283-349 241-305 (313)
116 COG5369 Uncharacterized conser 97.2 0.0034 7.5E-08 67.8 11.4 199 455-656 408-617 (743)
117 PF13646 HEAT_2: HEAT repeats; 97.1 0.0011 2.5E-08 55.5 6.5 86 438-545 1-88 (88)
118 KOG1242 Protein containing ada 97.1 0.034 7.3E-07 61.7 19.2 268 394-676 134-445 (569)
119 PF11841 DUF3361: Domain of un 97.1 0.01 2.2E-07 55.2 12.9 129 514-643 6-142 (160)
120 KOG2879 Predicted E3 ubiquitin 97.1 0.00032 7E-09 69.3 3.2 49 281-329 237-287 (298)
121 TIGR02270 conserved hypothetic 97.1 0.07 1.5E-06 58.3 21.5 151 437-631 55-206 (410)
122 PF05659 RPW8: Arabidopsis bro 97.1 0.0085 1.8E-07 55.6 12.2 96 34-130 25-121 (147)
123 KOG1242 Protein containing ada 97.1 0.026 5.6E-07 62.6 17.8 244 395-659 217-465 (569)
124 PF12861 zf-Apc11: Anaphase-pr 97.0 0.00058 1.2E-08 56.0 3.5 45 285-329 34-82 (85)
125 smart00185 ARM Armadillo/beta- 97.0 0.0011 2.5E-08 46.7 4.7 39 426-464 2-40 (41)
126 KOG0824 Predicted E3 ubiquitin 97.0 0.00028 6.1E-09 70.6 1.8 47 285-331 9-55 (324)
127 KOG1517 Guanine nucleotide bin 97.0 0.015 3.3E-07 67.5 15.5 199 433-633 509-733 (1387)
128 KOG0802 E3 ubiquitin ligase [P 96.9 0.00039 8.5E-09 79.1 2.2 48 281-329 289-341 (543)
129 KOG4628 Predicted E3 ubiquitin 96.9 0.0006 1.3E-08 71.1 3.0 48 284-331 230-280 (348)
130 COG5369 Uncharacterized conser 96.8 0.0086 1.9E-07 64.8 10.9 261 412-675 407-740 (743)
131 KOG1002 Nucleotide excision re 96.8 0.00052 1.1E-08 73.2 1.7 51 281-331 534-588 (791)
132 COG1413 FOG: HEAT repeat [Ener 96.8 0.072 1.6E-06 56.9 18.2 182 436-671 43-237 (335)
133 COG5181 HSH155 U2 snRNP splice 96.7 0.035 7.7E-07 61.1 14.7 239 437-681 605-875 (975)
134 smart00185 ARM Armadillo/beta- 96.7 0.0031 6.8E-08 44.4 4.6 39 510-549 3-41 (41)
135 COG5240 SEC21 Vesicle coat com 96.7 0.11 2.3E-06 57.1 17.7 252 394-678 264-557 (898)
136 KOG1062 Vesicle coat complex A 96.6 0.62 1.3E-05 53.4 23.4 268 388-679 136-455 (866)
137 KOG3036 Protein involved in ce 96.5 0.14 3E-06 50.7 15.8 178 495-675 96-290 (293)
138 KOG2042 Ubiquitin fusion degra 96.5 0.0031 6.8E-08 73.4 5.1 75 276-351 863-938 (943)
139 PF13513 HEAT_EZ: HEAT-like re 96.4 0.0046 1E-07 47.0 4.3 55 492-547 1-55 (55)
140 KOG1824 TATA-binding protein-i 96.4 0.051 1.1E-06 62.7 14.1 274 398-684 9-294 (1233)
141 KOG1789 Endocytosis protein RM 96.4 0.78 1.7E-05 53.9 23.2 137 410-549 1741-1883(2235)
142 KOG1059 Vesicle coat complex A 96.4 0.82 1.8E-05 51.8 22.8 219 393-633 143-366 (877)
143 COG5540 RING-finger-containing 96.4 0.0024 5.2E-08 63.9 2.9 46 284-329 324-372 (374)
144 KOG2259 Uncharacterized conser 96.3 0.024 5.2E-07 63.0 10.6 225 395-640 199-482 (823)
145 COG5231 VMA13 Vacuolar H+-ATPa 96.3 0.15 3.2E-06 52.3 15.3 222 407-631 162-427 (432)
146 KOG3036 Protein involved in ce 96.3 0.12 2.6E-06 51.1 14.2 146 410-557 95-255 (293)
147 COG5243 HRD1 HRD ubiquitin lig 96.3 0.0028 6.2E-08 65.1 3.1 46 282-328 286-344 (491)
148 KOG0213 Splicing factor 3b, su 96.3 0.15 3.3E-06 57.5 16.3 235 438-678 801-1067(1172)
149 KOG0804 Cytoplasmic Zn-finger 96.2 0.0025 5.4E-08 67.3 2.4 50 277-329 169-222 (493)
150 KOG1824 TATA-binding protein-i 96.2 0.097 2.1E-06 60.6 14.8 232 392-637 45-291 (1233)
151 COG5231 VMA13 Vacuolar H+-ATPa 96.1 0.17 3.6E-06 51.9 14.3 232 443-676 156-428 (432)
152 KOG2259 Uncharacterized conser 96.0 0.03 6.6E-07 62.2 9.5 212 441-674 203-473 (823)
153 COG5096 Vesicle coat complex, 96.0 0.31 6.6E-06 56.5 17.6 102 438-549 94-195 (757)
154 PF13513 HEAT_EZ: HEAT-like re 95.9 0.016 3.5E-07 43.9 5.0 55 450-505 1-55 (55)
155 KOG1517 Guanine nucleotide bin 95.9 0.22 4.7E-06 58.4 15.6 202 470-674 505-730 (1387)
156 KOG4367 Predicted Zn-finger pr 95.8 0.0034 7.4E-08 65.5 1.2 35 281-315 2-36 (699)
157 KOG0826 Predicted E3 ubiquitin 95.8 0.0076 1.6E-07 61.3 3.6 50 278-328 295-345 (357)
158 KOG1062 Vesicle coat complex A 95.7 1.1 2.3E-05 51.6 20.2 227 394-634 179-453 (866)
159 KOG1241 Karyopherin (importin) 95.7 0.46 9.9E-06 54.1 17.1 273 394-679 129-438 (859)
160 PF11841 DUF3361: Domain of un 95.7 0.16 3.4E-06 47.5 11.5 122 431-552 6-134 (160)
161 KOG1248 Uncharacterized conser 95.7 1.3 2.8E-05 53.1 21.2 218 446-676 664-898 (1176)
162 KOG3039 Uncharacterized conser 95.5 0.0087 1.9E-07 58.3 2.6 53 282-335 220-276 (303)
163 KOG4172 Predicted E3 ubiquitin 95.5 0.0037 8E-08 45.9 -0.0 45 284-328 8-53 (62)
164 KOG1061 Vesicle coat complex A 95.5 0.17 3.7E-06 57.7 12.9 269 393-680 120-419 (734)
165 PF04063 DUF383: Domain of unk 95.4 0.14 3E-06 49.8 10.6 124 532-657 7-157 (192)
166 PF04078 Rcd1: Cell differenti 95.3 0.36 7.7E-06 48.7 13.3 143 533-677 8-169 (262)
167 KOG1241 Karyopherin (importin) 95.3 0.82 1.8E-05 52.2 17.3 244 393-641 363-635 (859)
168 COG5096 Vesicle coat complex, 95.3 0.28 6E-06 56.9 14.0 107 392-508 90-196 (757)
169 PF04078 Rcd1: Cell differenti 95.2 0.17 3.6E-06 51.0 10.7 147 411-559 67-228 (262)
170 PF08569 Mo25: Mo25-like; Int 95.1 0.75 1.6E-05 48.9 16.0 221 431-658 71-308 (335)
171 COG5113 UFD2 Ubiquitin fusion 95.1 0.032 6.8E-07 61.5 5.6 76 275-351 846-922 (929)
172 COG5181 HSH155 U2 snRNP splice 95.1 0.39 8.4E-06 53.3 13.6 107 398-508 650-760 (975)
173 KOG1734 Predicted RING-contain 95.1 0.0056 1.2E-07 60.4 -0.3 56 281-336 222-288 (328)
174 KOG1061 Vesicle coat complex A 95.0 0.65 1.4E-05 53.1 15.5 242 394-660 49-293 (734)
175 PF04641 Rtf2: Rtf2 RING-finge 94.9 0.02 4.3E-07 58.8 3.3 53 279-333 109-165 (260)
176 PF04063 DUF383: Domain of unk 94.8 0.13 2.9E-06 50.0 8.6 123 448-570 7-156 (192)
177 PF11698 V-ATPase_H_C: V-ATPas 94.8 0.087 1.9E-06 46.7 6.6 71 394-464 43-114 (119)
178 PF14668 RICTOR_V: Rapamycin-i 94.8 0.13 2.8E-06 41.5 7.0 66 537-602 4-70 (73)
179 COG5240 SEC21 Vesicle coat com 94.7 8.8 0.00019 42.8 22.7 221 394-633 223-461 (898)
180 PF13764 E3_UbLigase_R4: E3 ub 94.7 1.7 3.7E-05 51.3 18.7 241 431-676 112-406 (802)
181 PF11793 FANCL_C: FANCL C-term 94.7 0.0092 2E-07 47.9 0.2 47 283-329 2-66 (70)
182 KOG1077 Vesicle coat complex A 94.7 1.5 3.1E-05 49.8 17.0 108 390-507 107-216 (938)
183 KOG0213 Splicing factor 3b, su 94.7 0.24 5.1E-06 56.0 11.0 216 398-633 845-1066(1172)
184 KOG3800 Predicted E3 ubiquitin 94.7 0.021 4.6E-07 57.3 2.6 49 285-333 2-55 (300)
185 KOG1039 Predicted E3 ubiquitin 94.6 0.019 4.1E-07 60.4 2.4 49 281-329 159-221 (344)
186 PF05004 IFRD: Interferon-rela 94.6 1.5 3.3E-05 46.2 16.5 183 445-632 52-257 (309)
187 KOG2999 Regulator of Rac1, req 94.6 0.71 1.5E-05 50.7 13.9 162 478-642 84-252 (713)
188 KOG0289 mRNA splicing factor [ 94.6 0.11 2.4E-06 55.0 7.7 51 284-335 1-52 (506)
189 COG5194 APC11 Component of SCF 94.4 0.04 8.7E-07 44.0 3.0 43 285-328 33-80 (88)
190 PF09759 Atx10homo_assoc: Spin 94.3 0.16 3.5E-06 43.8 7.0 66 536-601 2-71 (102)
191 KOG2274 Predicted importin 9 [ 94.3 0.97 2.1E-05 52.5 15.0 224 446-677 460-690 (1005)
192 KOG0828 Predicted E3 ubiquitin 94.3 0.023 5E-07 60.7 2.0 50 280-329 568-634 (636)
193 KOG4151 Myosin assembly protei 94.2 0.73 1.6E-05 52.9 13.8 241 425-674 493-739 (748)
194 PF06371 Drf_GBD: Diaphanous G 94.2 0.29 6.3E-06 47.4 9.6 110 520-631 66-186 (187)
195 PF12719 Cnd3: Nuclear condens 94.1 2 4.3E-05 45.1 16.3 186 437-632 27-233 (298)
196 PF12031 DUF3518: Domain of un 94.1 0.14 3E-06 50.8 6.8 165 500-665 12-234 (257)
197 PF09759 Atx10homo_assoc: Spin 94.1 0.17 3.8E-06 43.6 6.7 65 411-475 3-70 (102)
198 KOG1060 Vesicle coat complex A 94.1 2.3 4.9E-05 48.9 16.9 208 397-632 38-246 (968)
199 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.27 5.8E-06 42.2 7.8 68 605-675 29-96 (97)
200 PF12755 Vac14_Fab1_bd: Vacuol 94.0 0.18 3.9E-06 43.3 6.6 67 519-588 26-94 (97)
201 KOG0825 PHD Zn-finger protein 93.9 0.013 2.9E-07 65.7 -0.7 49 281-330 121-172 (1134)
202 KOG2611 Neurochondrin/leucine- 93.9 3.3 7.2E-05 45.0 16.9 128 482-614 16-163 (698)
203 KOG0827 Predicted E3 ubiquitin 93.9 0.03 6.5E-07 58.2 1.9 49 283-331 4-58 (465)
204 KOG2817 Predicted E3 ubiquitin 93.9 0.041 8.8E-07 57.9 2.8 47 280-326 331-382 (394)
205 PF05004 IFRD: Interferon-rela 93.7 3.8 8.3E-05 43.2 17.4 192 479-677 45-258 (309)
206 KOG1645 RING-finger-containing 93.7 0.034 7.3E-07 58.3 1.9 59 284-342 5-69 (463)
207 KOG4151 Myosin assembly protei 93.5 0.67 1.4E-05 53.2 11.7 192 468-667 495-690 (748)
208 COG5215 KAP95 Karyopherin (imp 93.3 6.5 0.00014 43.8 18.2 275 395-678 134-439 (858)
209 PF08569 Mo25: Mo25-like; Int 93.1 2 4.3E-05 45.7 14.1 218 394-614 76-308 (335)
210 KOG1785 Tyrosine kinase negati 93.0 0.045 9.7E-07 57.0 1.5 46 285-330 371-417 (563)
211 smart00744 RINGv The RING-vari 92.9 0.12 2.7E-06 38.2 3.3 41 285-325 1-49 (49)
212 PF12717 Cnd1: non-SMC mitotic 92.6 9.4 0.0002 36.6 17.1 92 492-591 2-93 (178)
213 KOG1571 Predicted E3 ubiquitin 92.5 0.081 1.8E-06 55.0 2.6 50 276-329 298-347 (355)
214 PF14570 zf-RING_4: RING/Ubox 92.4 0.089 1.9E-06 38.4 2.0 42 286-327 1-46 (48)
215 PF11701 UNC45-central: Myosin 92.4 0.25 5.4E-06 46.6 5.6 146 478-629 4-156 (157)
216 KOG1248 Uncharacterized conser 92.3 5.1 0.00011 48.3 16.9 231 405-643 665-909 (1176)
217 KOG1240 Protein kinase contain 92.2 4.3 9.3E-05 49.0 16.1 269 396-677 424-726 (1431)
218 PF02891 zf-MIZ: MIZ/SP-RING z 92.2 0.14 3E-06 38.1 2.8 45 283-327 2-50 (50)
219 COG5175 MOT2 Transcriptional r 92.2 0.089 1.9E-06 53.6 2.3 48 285-332 16-67 (480)
220 KOG4653 Uncharacterized conser 92.2 2.3 5.1E-05 49.3 13.6 214 447-673 738-961 (982)
221 PF13764 E3_UbLigase_R4: E3 ub 92.1 31 0.00068 41.1 23.9 211 393-609 116-382 (802)
222 KOG3039 Uncharacterized conser 92.1 0.1 2.2E-06 51.0 2.6 38 279-316 39-76 (303)
223 PF12717 Cnd1: non-SMC mitotic 92.1 5.8 0.00012 38.1 14.9 92 407-508 1-93 (178)
224 KOG1077 Vesicle coat complex A 92.0 17 0.00037 41.7 19.7 255 401-675 153-432 (938)
225 PF14447 Prok-RING_4: Prokaryo 92.0 0.091 2E-06 39.3 1.6 47 282-331 6-52 (55)
226 PF06025 DUF913: Domain of Unk 91.9 3.1 6.7E-05 45.2 13.9 181 413-614 3-207 (379)
227 COG5215 KAP95 Karyopherin (imp 91.8 14 0.00029 41.4 18.2 230 442-676 100-357 (858)
228 KOG4692 Predicted E3 ubiquitin 91.8 0.098 2.1E-06 53.7 2.1 47 281-328 420-466 (489)
229 COG5219 Uncharacterized conser 91.7 0.07 1.5E-06 61.3 1.1 49 281-329 1467-1523(1525)
230 KOG1078 Vesicle coat complex C 91.6 7.6 0.00017 44.8 16.7 260 394-677 245-533 (865)
231 KOG0567 HEAT repeat-containing 91.5 17 0.00038 36.8 19.3 196 435-675 66-279 (289)
232 KOG4265 Predicted E3 ubiquitin 91.4 0.13 2.8E-06 53.5 2.5 46 283-329 290-336 (349)
233 KOG0567 HEAT repeat-containing 91.1 8.7 0.00019 38.9 14.8 195 394-631 67-279 (289)
234 KOG2611 Neurochondrin/leucine- 91.0 5.6 0.00012 43.3 14.1 184 441-630 16-223 (698)
235 COG5209 RCD1 Uncharacterized p 90.8 2.6 5.7E-05 41.3 10.6 147 494-643 116-277 (315)
236 KOG2979 Protein involved in DN 90.8 0.21 4.5E-06 49.7 3.2 45 283-327 176-222 (262)
237 PF06371 Drf_GBD: Diaphanous G 90.6 1.6 3.5E-05 42.0 9.5 110 394-506 66-186 (187)
238 KOG1493 Anaphase-promoting com 90.6 0.1 2.3E-06 41.4 0.8 46 283-328 31-80 (84)
239 KOG0915 Uncharacterized conser 90.5 9 0.0002 47.5 16.7 265 407-685 970-1274(1702)
240 KOG1001 Helicase-like transcri 90.4 0.11 2.3E-06 60.2 1.0 46 284-330 455-501 (674)
241 PF12460 MMS19_C: RNAPII trans 90.3 5.5 0.00012 44.0 14.3 130 521-655 272-414 (415)
242 PF08045 CDC14: Cell division 90.2 2.8 6E-05 42.6 10.7 96 411-506 108-206 (257)
243 PF12460 MMS19_C: RNAPII trans 90.2 4 8.7E-05 45.0 13.1 185 395-592 190-396 (415)
244 KOG1058 Vesicle coat complex C 90.1 17 0.00037 41.9 17.5 134 403-551 215-348 (948)
245 PF02985 HEAT: HEAT repeat; I 90.0 0.39 8.5E-06 31.6 3.1 30 521-550 1-30 (31)
246 PF12719 Cnd3: Nuclear condens 89.5 7.8 0.00017 40.6 14.1 168 395-572 27-208 (298)
247 KOG0211 Protein phosphatase 2A 89.3 8.8 0.00019 45.2 15.3 262 397-675 358-624 (759)
248 KOG0211 Protein phosphatase 2A 89.3 8.9 0.00019 45.2 15.3 267 392-671 234-503 (759)
249 PF11698 V-ATPase_H_C: V-ATPas 89.2 0.71 1.5E-05 41.0 5.0 70 520-589 43-114 (119)
250 KOG1943 Beta-tubulin folding c 89.0 32 0.0007 41.4 19.3 220 390-622 337-601 (1133)
251 COG5209 RCD1 Uncharacterized p 89.0 2 4.3E-05 42.1 8.2 146 410-557 116-276 (315)
252 KOG3161 Predicted E3 ubiquitin 88.8 0.21 4.6E-06 55.3 1.7 41 279-322 7-51 (861)
253 KOG0301 Phospholipase A2-activ 88.7 7.7 0.00017 44.0 13.5 165 401-572 551-727 (745)
254 PF12530 DUF3730: Protein of u 88.5 20 0.00043 36.1 15.7 137 397-548 3-150 (234)
255 COG5220 TFB3 Cdk activating ki 88.5 0.16 3.4E-06 49.5 0.4 47 283-329 10-64 (314)
256 KOG2999 Regulator of Rac1, req 88.3 11 0.00023 42.0 13.9 155 395-551 84-244 (713)
257 KOG4185 Predicted E3 ubiquitin 88.2 0.49 1.1E-05 49.6 4.0 63 284-346 4-77 (296)
258 PF07814 WAPL: Wings apart-lik 88.0 18 0.00039 39.1 15.9 229 394-635 21-302 (361)
259 PF02985 HEAT: HEAT repeat; I 87.8 0.59 1.3E-05 30.8 2.7 28 438-465 2-29 (31)
260 KOG1243 Protein kinase [Genera 87.8 6.9 0.00015 44.7 12.6 254 401-675 261-514 (690)
261 PF05290 Baculo_IE-1: Baculovi 87.7 0.49 1.1E-05 42.2 2.9 50 282-331 79-134 (140)
262 KOG4464 Signaling protein RIC- 86.7 26 0.00056 37.7 15.2 227 407-634 110-404 (532)
263 PF08045 CDC14: Cell division 86.6 7 0.00015 39.8 10.9 98 535-633 106-208 (257)
264 KOG1240 Protein kinase contain 86.6 5.9 0.00013 47.9 11.6 109 479-590 424-537 (1431)
265 KOG1967 DNA repair/transcripti 86.3 2.1 4.6E-05 50.0 7.8 148 477-626 867-1018(1030)
266 KOG4653 Uncharacterized conser 86.2 13 0.00027 43.6 13.7 178 397-590 730-918 (982)
267 KOG3002 Zn finger protein [Gen 86.2 0.7 1.5E-05 48.1 3.6 61 279-346 44-105 (299)
268 KOG2930 SCF ubiquitin ligase, 86.1 0.5 1.1E-05 39.9 2.0 27 300-327 80-106 (114)
269 KOG2062 26S proteasome regulat 86.0 9.7 0.00021 43.8 12.4 124 436-576 554-680 (929)
270 KOG1820 Microtubule-associated 85.9 11 0.00023 44.9 13.4 184 397-590 256-443 (815)
271 PF11707 Npa1: Ribosome 60S bi 85.9 37 0.00081 36.1 16.8 158 394-553 56-241 (330)
272 KOG4535 HEAT and armadillo rep 85.9 0.63 1.4E-05 50.3 3.2 177 494-673 407-600 (728)
273 KOG2032 Uncharacterized conser 85.7 20 0.00043 39.5 14.2 229 446-676 268-531 (533)
274 KOG2274 Predicted importin 9 [ 85.7 54 0.0012 38.9 18.3 222 407-638 463-695 (1005)
275 PF05918 API5: Apoptosis inhib 85.7 17 0.00037 41.2 14.3 122 405-545 33-158 (556)
276 KOG3113 Uncharacterized conser 85.6 0.59 1.3E-05 46.1 2.6 50 280-332 108-161 (293)
277 KOG2933 Uncharacterized conser 85.2 4.3 9.4E-05 41.9 8.6 143 394-548 88-233 (334)
278 PF14500 MMS19_N: Dos2-interac 85.1 49 0.0011 34.0 18.4 219 400-635 5-240 (262)
279 PF14668 RICTOR_V: Rapamycin-i 84.8 5.1 0.00011 32.4 7.2 64 578-644 4-68 (73)
280 KOG4535 HEAT and armadillo rep 84.5 2.1 4.5E-05 46.5 6.1 182 449-633 404-604 (728)
281 KOG1566 Conserved protein Mo25 84.4 56 0.0012 34.1 16.5 220 431-658 74-311 (342)
282 KOG1943 Beta-tubulin folding c 84.2 28 0.0006 41.9 15.5 150 436-590 341-500 (1133)
283 KOG0915 Uncharacterized conser 84.2 30 0.00065 43.2 16.1 270 390-669 990-1299(1702)
284 COG5109 Uncharacterized conser 83.1 0.81 1.8E-05 46.6 2.4 48 279-326 332-384 (396)
285 PF11701 UNC45-central: Myosin 83.1 4.2 9.1E-05 38.3 7.2 143 398-547 7-157 (157)
286 PF12031 DUF3518: Domain of un 83.0 3.4 7.3E-05 41.2 6.5 80 535-614 139-227 (257)
287 PF08324 PUL: PUL domain; Int 82.9 10 0.00022 38.9 10.7 185 439-624 66-266 (268)
288 KOG1060 Vesicle coat complex A 82.5 64 0.0014 37.8 16.9 199 440-668 39-238 (968)
289 KOG4275 Predicted E3 ubiquitin 82.4 0.35 7.5E-06 48.7 -0.5 42 282-328 299-341 (350)
290 PF08324 PUL: PUL domain; Int 82.1 9.1 0.0002 39.3 9.9 162 396-559 65-241 (268)
291 KOG1058 Vesicle coat complex C 82.1 93 0.002 36.3 17.9 65 392-461 132-197 (948)
292 KOG2062 26S proteasome regulat 82.1 66 0.0014 37.4 16.8 130 519-666 553-684 (929)
293 KOG1788 Uncharacterized conser 82.0 20 0.00043 42.8 12.9 81 553-634 900-984 (2799)
294 KOG1078 Vesicle coat complex C 81.6 1.2E+02 0.0025 35.7 18.9 72 437-513 246-317 (865)
295 PF11864 DUF3384: Domain of un 81.2 33 0.00071 38.5 14.6 241 406-664 41-318 (464)
296 KOG2025 Chromosome condensatio 80.9 38 0.00083 39.0 14.4 115 391-513 82-196 (892)
297 KOG1820 Microtubule-associated 80.7 31 0.00066 41.2 14.4 173 491-674 266-441 (815)
298 KOG4362 Transcriptional regula 79.7 0.7 1.5E-05 52.7 0.6 65 282-346 20-86 (684)
299 KOG0298 DEAD box-containing he 79.3 0.59 1.3E-05 56.3 -0.1 47 279-326 1149-1196(1394)
300 cd03572 ENTH_epsin_related ENT 79.0 5.7 0.00012 35.6 6.1 73 605-677 40-120 (122)
301 KOG0414 Chromosome condensatio 78.3 11 0.00024 45.6 9.7 141 437-590 920-1064(1251)
302 KOG1566 Conserved protein Mo25 78.1 93 0.002 32.5 17.6 218 394-614 79-311 (342)
303 cd03569 VHS_Hrs_Vps27p VHS dom 77.9 10 0.00022 35.0 7.7 71 394-464 41-113 (142)
304 KOG0414 Chromosome condensatio 77.8 16 0.00034 44.3 10.8 140 395-549 920-1064(1251)
305 COG5218 YCG1 Chromosome conden 77.4 19 0.00042 40.4 10.6 113 390-510 87-199 (885)
306 KOG2956 CLIP-associating prote 77.2 1.1E+02 0.0023 33.9 15.8 143 521-673 330-474 (516)
307 KOG1967 DNA repair/transcripti 76.8 5.8 0.00013 46.6 6.8 149 436-587 867-1021(1030)
308 KOG2956 CLIP-associating prote 76.4 1E+02 0.0022 34.0 15.4 148 478-635 330-480 (516)
309 PF14225 MOR2-PAG1_C: Cell mor 76.3 56 0.0012 33.6 13.2 177 394-590 64-254 (262)
310 cd03561 VHS VHS domain family; 76.2 14 0.0003 33.6 8.1 72 394-465 37-112 (133)
311 PF10272 Tmpp129: Putative tra 75.7 1.9 4.1E-05 45.9 2.4 30 300-329 305-351 (358)
312 PF06025 DUF913: Domain of Unk 75.3 53 0.0011 35.7 13.5 121 437-558 107-242 (379)
313 KOG1991 Nuclear transport rece 75.0 1.5E+02 0.0033 35.7 17.5 122 435-560 409-543 (1010)
314 KOG2114 Vacuolar assembly/sort 74.9 1.6 3.5E-05 50.5 1.7 44 279-326 836-880 (933)
315 KOG3665 ZYG-1-like serine/thre 74.9 31 0.00067 40.7 12.3 194 459-673 494-694 (699)
316 PF14569 zf-UDP: Zinc-binding 73.9 4.4 9.5E-05 32.7 3.5 47 283-329 9-62 (80)
317 KOG1941 Acetylcholine receptor 73.8 1.5 3.2E-05 46.1 1.0 45 282-326 364-413 (518)
318 KOG1814 Predicted E3 ubiquitin 73.5 4.3 9.4E-05 43.2 4.4 45 282-326 183-237 (445)
319 PHA03096 p28-like protein; Pro 73.3 2.1 4.5E-05 44.3 2.0 43 284-326 179-231 (284)
320 COG5627 MMS21 DNA repair prote 73.0 2.2 4.8E-05 41.7 2.0 55 283-337 189-247 (275)
321 cd03568 VHS_STAM VHS domain fa 72.8 17 0.00036 33.7 7.7 73 393-465 36-110 (144)
322 COG3813 Uncharacterized protei 72.7 3.8 8.2E-05 32.3 2.8 40 295-337 21-60 (84)
323 KOG2137 Protein kinase [Signal 72.6 39 0.00084 39.0 11.8 136 390-533 385-521 (700)
324 COG5116 RPN2 26S proteasome re 72.3 44 0.00095 37.5 11.6 123 436-573 551-674 (926)
325 KOG2137 Protein kinase [Signal 72.3 64 0.0014 37.4 13.4 134 435-574 388-521 (700)
326 KOG4739 Uncharacterized protei 72.2 1.4 3.1E-05 43.7 0.5 49 285-336 5-55 (233)
327 COG5218 YCG1 Chromosome conden 72.0 1.3E+02 0.0028 34.2 15.1 97 519-623 90-190 (885)
328 PF10367 Vps39_2: Vacuolar sor 71.7 1.4 3E-05 38.3 0.3 36 276-311 71-108 (109)
329 COG5116 RPN2 26S proteasome re 71.6 18 0.00038 40.5 8.5 127 519-663 550-678 (926)
330 PF05918 API5: Apoptosis inhib 71.5 19 0.00041 40.9 9.0 96 394-502 59-157 (556)
331 KOG2025 Chromosome condensatio 71.4 33 0.00071 39.5 10.7 126 493-626 61-187 (892)
332 smart00288 VHS Domain present 71.3 19 0.00042 32.7 7.7 71 394-464 37-110 (133)
333 cd03567 VHS_GGA VHS domain fam 71.0 21 0.00046 32.8 7.8 71 394-464 38-115 (139)
334 KOG1991 Nuclear transport rece 70.9 2.5E+02 0.0053 34.0 19.5 193 392-589 460-670 (1010)
335 PF01347 Vitellogenin_N: Lipop 70.9 76 0.0017 36.9 14.6 166 394-584 395-583 (618)
336 cd03568 VHS_STAM VHS domain fa 70.1 15 0.00033 34.0 6.7 72 519-590 36-110 (144)
337 PF10521 DUF2454: Protein of u 69.5 33 0.00071 35.7 10.0 72 519-590 118-203 (282)
338 PF11707 Npa1: Ribosome 60S bi 69.1 1.6E+02 0.0035 31.2 20.2 156 438-593 58-240 (330)
339 PF08167 RIX1: rRNA processing 68.7 22 0.00047 33.7 7.8 109 478-589 26-142 (165)
340 PF08167 RIX1: rRNA processing 67.6 33 0.00072 32.4 8.8 122 562-686 26-153 (165)
341 PF11865 DUF3385: Domain of un 67.5 56 0.0012 30.8 10.2 142 478-630 11-155 (160)
342 KOG3665 ZYG-1-like serine/thre 67.3 1E+02 0.0022 36.5 14.3 192 417-627 494-692 (699)
343 TIGR00634 recN DNA repair prot 67.0 1.6E+02 0.0034 34.0 15.7 77 42-123 181-263 (563)
344 KOG1940 Zn-finger protein [Gen 66.5 3.7 7.9E-05 42.0 2.0 44 282-326 157-204 (276)
345 KOG0883 Cyclophilin type, U bo 66.0 4.6 0.0001 42.5 2.7 52 282-334 39-90 (518)
346 PF05883 Baculo_RING: Baculovi 65.7 6.7 0.00015 35.4 3.3 43 283-326 26-77 (134)
347 PF07191 zinc-ribbons_6: zinc- 65.6 0.5 1.1E-05 37.4 -3.3 41 283-329 1-41 (70)
348 PF06844 DUF1244: Protein of u 64.0 4.2 9.1E-05 31.6 1.4 13 304-316 11-23 (68)
349 PF14446 Prok-RING_1: Prokaryo 63.7 5.8 0.00013 29.8 2.1 28 284-311 6-37 (54)
350 cd03569 VHS_Hrs_Vps27p VHS dom 63.4 20 0.00044 33.0 6.2 71 437-507 42-114 (142)
351 KOG2933 Uncharacterized conser 62.5 34 0.00073 35.6 8.0 136 482-631 93-233 (334)
352 PF01347 Vitellogenin_N: Lipop 62.4 1E+02 0.0023 35.8 13.5 166 437-627 396-584 (618)
353 cd03561 VHS VHS domain family; 62.4 49 0.0011 30.0 8.5 74 605-679 39-115 (133)
354 KOG4464 Signaling protein RIC- 62.3 1.5E+02 0.0033 32.2 12.8 133 480-614 48-198 (532)
355 PF12530 DUF3730: Protein of u 62.1 1.8E+02 0.0039 29.2 15.5 140 479-634 2-153 (234)
356 PF14726 RTTN_N: Rotatin, an a 62.0 62 0.0013 27.8 8.4 67 435-502 29-95 (98)
357 PF11865 DUF3385: Domain of un 61.7 43 0.00093 31.6 8.2 143 395-548 11-156 (160)
358 PF01726 LexA_DNA_bind: LexA D 61.3 23 0.00049 27.9 5.2 47 158-214 6-52 (65)
359 KOG2038 CAATT-binding transcri 61.0 89 0.0019 36.5 11.5 218 396-644 198-422 (988)
360 PF10363 DUF2435: Protein of u 61.0 22 0.00047 30.2 5.4 69 395-465 4-72 (92)
361 cd03567 VHS_GGA VHS domain fam 60.6 29 0.00063 31.9 6.6 71 520-590 38-116 (139)
362 KOG1020 Sister chromatid cohes 60.4 88 0.0019 39.4 12.1 142 436-588 816-958 (1692)
363 PF04821 TIMELESS: Timeless pr 60.4 1.9E+02 0.004 29.8 13.3 102 431-551 35-151 (266)
364 PF05605 zf-Di19: Drought indu 59.8 4.3 9.3E-05 30.6 0.9 38 282-326 1-39 (54)
365 KOG3899 Uncharacterized conser 59.4 5.5 0.00012 40.3 1.8 27 303-329 327-365 (381)
366 COG5098 Chromosome condensatio 59.1 51 0.0011 38.0 9.2 106 563-672 301-411 (1128)
367 KOG2032 Uncharacterized conser 59.0 48 0.001 36.7 8.8 176 494-674 233-414 (533)
368 PF08746 zf-RING-like: RING-li 58.9 11 0.00024 27.0 2.8 39 286-324 1-43 (43)
369 PF00790 VHS: VHS domain; Int 58.3 43 0.00094 30.7 7.5 73 605-678 44-120 (140)
370 KOG1020 Sister chromatid cohes 58.3 1.3E+02 0.0028 38.1 12.9 146 394-551 816-962 (1692)
371 KOG3970 Predicted E3 ubiquitin 57.6 19 0.00041 35.1 5.0 44 285-328 52-104 (299)
372 PF14353 CpXC: CpXC protein 57.2 6.6 0.00014 35.5 1.8 47 283-329 1-49 (128)
373 PF10363 DUF2435: Protein of u 57.1 40 0.00088 28.5 6.4 77 563-641 5-81 (92)
374 smart00288 VHS Domain present 56.7 30 0.00066 31.4 6.1 71 437-507 38-111 (133)
375 PRK10869 recombination and rep 56.4 3.6E+02 0.0079 31.0 16.8 51 43-95 178-228 (553)
376 KOG4718 Non-SMC (structural ma 56.2 7 0.00015 37.8 1.8 46 283-329 181-227 (235)
377 KOG1812 Predicted E3 ubiquitin 55.7 6.5 0.00014 42.7 1.8 69 282-351 145-227 (384)
378 smart00638 LPD_N Lipoprotein N 55.7 3.7E+02 0.008 30.9 16.6 199 438-668 313-537 (574)
379 KOG0301 Phospholipase A2-activ 55.3 2.7E+02 0.0059 32.2 14.0 163 442-614 550-727 (745)
380 PF00790 VHS: VHS domain; Int 55.2 31 0.00067 31.7 6.0 72 393-464 41-117 (140)
381 PF12252 SidE: Dot/Icm substra 54.7 2.6E+02 0.0056 34.1 14.1 151 81-243 1014-1174(1439)
382 PF12231 Rif1_N: Rap1-interact 54.2 3.2E+02 0.0069 29.6 15.7 216 449-674 59-301 (372)
383 PHA02825 LAP/PHD finger-like p 52.8 15 0.00033 34.1 3.4 46 283-329 8-59 (162)
384 PF08216 CTNNBL: Catenin-beta- 52.3 13 0.00028 32.4 2.7 43 412-455 64-106 (108)
385 PF03854 zf-P11: P-11 zinc fin 51.8 7.5 0.00016 28.2 0.9 31 300-331 18-48 (50)
386 PF06676 DUF1178: Protein of u 51.5 6.6 0.00014 36.3 0.8 24 300-328 9-42 (148)
387 COG5656 SXM1 Importin, protein 51.0 4.3E+02 0.0092 31.2 14.7 131 435-570 407-548 (970)
388 PF13811 DUF4186: Domain of un 50.6 10 0.00023 32.8 1.8 21 295-316 64-87 (111)
389 COG5236 Uncharacterized conser 50.2 15 0.00033 38.1 3.2 48 280-327 58-106 (493)
390 PF10274 ParcG: Parkin co-regu 49.8 1.7E+02 0.0038 28.2 10.2 73 519-591 37-110 (183)
391 PF06012 DUF908: Domain of Unk 49.8 66 0.0014 34.2 8.3 76 493-568 237-323 (329)
392 KOG0825 PHD Zn-finger protein 49.7 15 0.00033 42.3 3.4 49 277-325 90-150 (1134)
393 PLN02189 cellulose synthase 49.7 13 0.00028 44.9 3.0 47 283-329 34-87 (1040)
394 KOG0314 Predicted E3 ubiquitin 49.3 8.9 0.00019 41.9 1.5 69 279-349 215-287 (448)
395 cd08050 TAF6 TATA Binding Prot 49.3 79 0.0017 33.9 8.7 143 394-547 178-338 (343)
396 PF06906 DUF1272: Protein of u 49.2 19 0.00042 27.2 2.8 29 300-331 26-54 (57)
397 KOG2034 Vacuolar sorting prote 48.7 8.9 0.00019 45.0 1.5 41 276-316 810-852 (911)
398 PF14225 MOR2-PAG1_C: Cell mor 48.5 3.2E+02 0.007 28.0 16.9 163 451-632 77-254 (262)
399 PF14726 RTTN_N: Rotatin, an a 48.2 72 0.0016 27.4 6.6 67 560-627 29-95 (98)
400 PF14500 MMS19_N: Dos2-interac 48.2 3.2E+02 0.007 28.0 15.5 220 440-678 3-239 (262)
401 PF14666 RICTOR_M: Rapamycin-i 48.1 3E+02 0.0065 27.6 13.4 128 534-674 78-223 (226)
402 PF13251 DUF4042: Domain of un 48.0 1.4E+02 0.0029 28.9 9.2 142 410-552 2-177 (182)
403 PF08216 CTNNBL: Catenin-beta- 47.9 21 0.00046 31.1 3.3 43 537-579 63-105 (108)
404 KOG3268 Predicted E3 ubiquitin 47.8 14 0.00031 34.6 2.4 31 299-329 188-228 (234)
405 PHA02862 5L protein; Provision 47.1 17 0.00037 33.2 2.7 44 285-329 4-53 (156)
406 PLN02195 cellulose synthase A 45.9 15 0.00033 44.0 2.8 45 285-329 8-59 (977)
407 PF12906 RINGv: RING-variant d 45.7 17 0.00037 26.6 2.1 39 286-324 1-47 (47)
408 PLN02436 cellulose synthase A 44.3 17 0.00038 43.9 3.0 47 283-329 36-89 (1094)
409 smart00638 LPD_N Lipoprotein N 43.9 5.5E+02 0.012 29.5 16.2 130 478-627 394-540 (574)
410 KOG1410 Nuclear transport rece 43.6 5.9E+02 0.013 29.7 14.3 261 406-676 51-334 (1082)
411 KOG0392 SNF2 family DNA-depend 43.4 5.5E+02 0.012 32.3 14.7 245 394-678 77-327 (1549)
412 PF12830 Nipped-B_C: Sister ch 43.0 1E+02 0.0022 29.7 7.8 68 393-465 7-74 (187)
413 PF04216 FdhE: Protein involve 42.6 4.2 9.2E-05 42.5 -2.1 44 283-327 172-220 (290)
414 COG0068 HypF Hydrogenase matur 42.2 16 0.00035 42.0 2.2 52 277-328 95-183 (750)
415 COG3492 Uncharacterized protei 41.5 13 0.00029 30.7 1.1 13 304-316 42-54 (104)
416 PLN02638 cellulose synthase A 41.5 19 0.00041 43.7 2.7 47 283-329 17-70 (1079)
417 PF10497 zf-4CXXC_R1: Zinc-fin 41.0 26 0.00055 30.6 2.8 26 302-327 37-70 (105)
418 PF10521 DUF2454: Protein of u 40.7 1.1E+02 0.0025 31.6 8.2 111 477-589 119-252 (282)
419 PRK12495 hypothetical protein; 40.4 35 0.00075 33.6 3.8 30 207-241 8-37 (226)
420 KOG1243 Protein kinase [Genera 40.0 2.5E+02 0.0054 32.6 11.0 191 470-677 286-477 (690)
421 COG5098 Chromosome condensatio 39.8 87 0.0019 36.2 7.2 112 438-552 301-418 (1128)
422 KOG1410 Nuclear transport rece 39.4 3.8E+02 0.0083 31.2 12.0 144 478-632 6-157 (1082)
423 cd08050 TAF6 TATA Binding Prot 39.3 1.7E+02 0.0037 31.3 9.4 101 479-590 180-297 (343)
424 PRK04023 DNA polymerase II lar 38.6 26 0.00057 42.0 3.2 68 281-352 624-696 (1121)
425 KOG1832 HIV-1 Vpr-binding prot 36.8 93 0.002 37.0 7.0 102 449-562 675-786 (1516)
426 PF12726 SEN1_N: SEN1 N termin 36.8 3.6E+02 0.0079 32.1 12.6 88 451-549 496-585 (727)
427 PF04499 SAPS: SIT4 phosphatas 36.2 2.2E+02 0.0047 32.0 9.9 78 598-677 58-150 (475)
428 TIGR01562 FdhE formate dehydro 36.1 9.9 0.00022 39.8 -0.6 44 283-327 184-233 (305)
429 KOG1815 Predicted E3 ubiquitin 35.8 30 0.00064 38.6 3.0 37 280-316 67-104 (444)
430 PF07814 WAPL: Wings apart-lik 35.7 1.5E+02 0.0032 32.1 8.3 69 522-590 23-94 (361)
431 PLN02915 cellulose synthase A 35.7 25 0.00055 42.5 2.6 47 283-329 15-68 (1044)
432 COG2176 PolC DNA polymerase II 35.7 26 0.00056 42.8 2.6 43 277-331 908-952 (1444)
433 KOG1395 Tryptophan synthase be 35.6 53 0.0012 34.7 4.5 23 82-104 123-145 (477)
434 cd00197 VHS_ENTH_ANTH VHS, ENT 35.0 1.8E+02 0.0039 25.3 7.5 69 605-674 39-113 (115)
435 PF09889 DUF2116: Uncharacteri 34.5 53 0.0011 25.4 3.3 15 317-331 2-16 (59)
436 PF08506 Cse1: Cse1; InterPro 34.2 6.3E+02 0.014 27.3 14.3 129 492-627 225-370 (370)
437 PF01417 ENTH: ENTH domain; I 34.0 62 0.0014 28.9 4.3 92 579-676 21-121 (125)
438 PF12726 SEN1_N: SEN1 N termin 33.9 2.9E+02 0.0064 32.9 11.2 125 519-644 440-566 (727)
439 PF07800 DUF1644: Protein of u 33.6 20 0.00044 33.3 1.0 21 282-302 1-21 (162)
440 PF11864 DUF3384: Domain of un 33.5 7.2E+02 0.016 27.8 20.3 81 444-530 36-117 (464)
441 cd00350 rubredoxin_like Rubred 33.3 30 0.00064 23.1 1.6 10 318-327 17-26 (33)
442 PF10571 UPF0547: Uncharacteri 33.2 22 0.00048 22.5 0.9 9 285-293 2-10 (26)
443 cd00730 rubredoxin Rubredoxin; 33.1 20 0.00043 26.6 0.8 15 277-291 28-42 (50)
444 KOG3579 Predicted E3 ubiquitin 32.5 25 0.00053 35.7 1.5 45 279-323 264-316 (352)
445 COG5656 SXM1 Importin, protein 32.4 4.2E+02 0.009 31.3 11.1 72 519-590 407-489 (970)
446 PF15616 TerY-C: TerY-C metal 32.3 19 0.00041 32.6 0.6 44 279-329 73-116 (131)
447 PF08506 Cse1: Cse1; InterPro 31.9 6.9E+02 0.015 27.1 12.9 155 504-671 196-370 (370)
448 KOG2312 Predicted transcriptio 31.4 9 0.0002 43.4 -1.9 153 500-656 15-170 (847)
449 PF05597 Phasin: Poly(hydroxya 30.8 3E+02 0.0064 25.1 8.1 32 188-219 94-128 (132)
450 PF12783 Sec7_N: Guanine nucle 30.7 3.1E+02 0.0068 25.7 8.8 79 553-633 65-147 (168)
451 KOG2932 E3 ubiquitin ligase in 30.6 23 0.0005 36.4 1.0 42 284-328 91-133 (389)
452 smart00531 TFIIE Transcription 30.6 27 0.00059 32.4 1.4 38 281-330 97-135 (147)
453 PF00301 Rubredoxin: Rubredoxi 30.5 21 0.00046 26.1 0.5 15 277-291 28-42 (47)
454 KOG1949 Uncharacterized conser 30.4 7.2E+02 0.016 29.3 12.4 143 482-633 179-332 (1005)
455 KOG1788 Uncharacterized conser 30.3 1.1E+03 0.024 29.3 14.1 177 413-591 751-983 (2799)
456 PLN02400 cellulose synthase 30.2 31 0.00066 42.0 2.1 47 283-329 36-89 (1085)
457 PF10235 Cript: Microtubule-as 30.1 30 0.00066 29.1 1.5 38 283-330 44-81 (90)
458 PRK14707 hypothetical protein; 30.1 1.5E+03 0.033 30.6 19.0 271 396-672 165-441 (2710)
459 PRK03564 formate dehydrogenase 30.0 18 0.0004 37.8 0.2 44 282-326 186-234 (309)
460 PF12231 Rif1_N: Rap1-interact 29.8 6.2E+02 0.013 27.4 12.0 177 491-675 6-203 (372)
461 PF10274 ParcG: Parkin co-regu 29.2 4.3E+02 0.0093 25.5 9.2 73 478-552 39-112 (183)
462 PF12830 Nipped-B_C: Sister ch 29.1 1.3E+02 0.0029 28.9 6.1 66 605-677 10-75 (187)
463 KOG4231 Intracellular membrane 29.0 54 0.0012 36.3 3.4 170 415-588 226-397 (763)
464 PF06685 DUF1186: Protein of u 28.9 6.3E+02 0.014 25.7 13.4 71 519-600 72-153 (249)
465 KOG0309 Conserved WD40 repeat- 28.9 38 0.00083 39.1 2.4 46 281-327 1026-1074(1081)
466 KOG2462 C2H2-type Zn-finger pr 28.9 30 0.00066 35.2 1.5 52 280-331 158-228 (279)
467 PF14663 RasGEF_N_2: Rapamycin 28.6 2.5E+02 0.0054 24.8 7.2 42 392-434 6-47 (115)
468 PLN03205 ATR interacting prote 28.6 1.9E+02 0.0042 31.2 7.3 111 564-677 326-447 (652)
469 KOG2549 Transcription initiati 28.6 5.8E+02 0.013 29.0 11.2 142 478-631 208-369 (576)
470 PLN03076 ARF guanine nucleotid 28.0 3.6E+02 0.0078 35.6 10.9 135 447-588 1148-1297(1780)
471 PRK11088 rrmA 23S rRNA methylt 27.9 33 0.00071 35.3 1.6 25 283-307 2-29 (272)
472 COG3937 Uncharacterized conser 27.9 2.6E+02 0.0056 24.3 6.6 83 131-219 15-102 (108)
473 KOG1952 Transcription factor N 27.8 48 0.001 38.9 3.0 46 282-327 190-245 (950)
474 KOG0803 Predicted E3 ubiquitin 27.4 1.4E+03 0.031 29.3 17.1 256 394-659 41-333 (1312)
475 PF13251 DUF4042: Domain of un 27.3 5.3E+02 0.011 24.9 9.6 109 479-591 41-175 (182)
476 KOG1992 Nuclear export recepto 27.3 6.8E+02 0.015 30.0 11.8 235 438-677 500-775 (960)
477 PF14666 RICTOR_M: Rapamycin-i 27.0 6.5E+02 0.014 25.2 11.8 126 410-548 80-224 (226)
478 PF07923 N1221: N1221-like pro 26.2 1.2E+02 0.0027 31.6 5.6 55 393-447 59-127 (293)
479 KOG0396 Uncharacterized conser 25.9 51 0.0011 35.0 2.6 45 284-328 331-378 (389)
480 PF04641 Rtf2: Rtf2 RING-finge 25.1 58 0.0013 33.4 2.8 35 283-317 34-69 (260)
481 cd03565 VHS_Tom1 VHS domain fa 24.9 2.9E+02 0.0062 25.4 7.1 72 519-590 37-115 (141)
482 cd08325 CARD_CASP1-like Caspas 24.4 2.6E+02 0.0055 23.1 6.0 56 41-97 2-61 (83)
483 PRK06424 transcription factor; 23.6 3.5E+02 0.0076 25.0 7.3 63 133-200 73-139 (144)
484 KOG2169 Zn-finger transcriptio 23.6 57 0.0012 38.1 2.7 69 278-348 301-375 (636)
485 cd08329 CARD_BIRC2_BIRC3 Caspa 23.0 1.5E+02 0.0032 25.2 4.4 56 39-95 9-64 (94)
486 cd08330 CARD_ASC_NALP1 Caspase 22.8 2.9E+02 0.0063 22.7 6.1 54 41-95 3-56 (82)
487 cd00197 VHS_ENTH_ANTH VHS, ENT 22.8 3.3E+02 0.0071 23.6 6.9 70 520-589 37-114 (115)
488 KOG1100 Predicted E3 ubiquitin 22.4 48 0.001 32.7 1.5 38 286-328 161-199 (207)
489 PF04388 Hamartin: Hamartin pr 22.3 1.1E+03 0.024 27.9 12.8 129 438-588 6-138 (668)
490 PF06012 DUF908: Domain of Unk 22.2 3E+02 0.0066 29.2 7.7 59 535-593 237-300 (329)
491 PF00619 CARD: Caspase recruit 22.1 3.1E+02 0.0068 22.1 6.3 63 41-104 4-67 (85)
492 COG3058 FdhE Uncharacterized p 22.0 58 0.0013 33.2 2.0 46 281-327 183-234 (308)
493 PF14357 DUF4404: Domain of un 21.9 2.9E+02 0.0064 23.0 5.9 72 115-195 4-78 (85)
494 KOG1087 Cytosolic sorting prot 21.8 2.8E+02 0.006 31.1 7.3 68 393-460 37-107 (470)
495 KOG2225 Proteins containing re 21.8 1.8E+02 0.0038 31.7 5.5 53 527-580 475-527 (695)
496 KOG0891 DNA-dependent protein 21.6 1.1E+03 0.023 32.4 13.4 200 473-677 561-764 (2341)
497 KOG2199 Signal transducing ada 21.5 3E+02 0.0066 29.7 7.1 72 604-676 46-118 (462)
498 PF00096 zf-C2H2: Zinc finger, 21.3 30 0.00065 20.5 -0.1 11 285-295 2-12 (23)
499 PF07304 SRA1: Steroid recepto 21.3 4.3E+02 0.0092 24.8 7.6 42 40-86 62-103 (157)
500 cd08324 CARD_NOD1_CARD4 Caspas 21.3 3.9E+02 0.0084 22.3 6.2 54 41-95 3-59 (85)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6e-28 Score=258.21 Aligned_cols=281 Identities=23% Similarity=0.293 Sum_probs=255.0
Q ss_pred hhHHHHHHHhhc-CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HH
Q 046850 394 MTAEFLVGKLAM-GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s-~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 471 (686)
|.++.+|..|.. .++..|.+|+|+|.++|.++.+.-..++++|++|.++.+|.+++..+++.|+|+|+|++.+... |.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 789999999984 4699999999999999999999999999999999999999999999999999999999999877 99
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.++..|++++|+.++..........+++|+|.|||.+......+.....++|.|..++.+.++.+..+|+|||.+|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998855578999999999999998666665555779999999999999999999999999999766
Q ss_pred C-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHH
Q 046850 552 A-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLL 628 (686)
Q Consensus 552 ~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~ 628 (686)
. ..+.++++|+++.|+.+|...+..++..|+++++|++. ++...+.+++.|+ +|.|..++.. ....+|..|++++.
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~-L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA-LPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh-HHHHHHHhccCcchhHHHHHHHHHH
Confidence 5 67778899999999999999999999999999999976 5566788899999 9999999984 55668999999999
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
|++.+. .+.++.++. +|++|.|+.++++++.+.|++|+|++.++...
T Consensus 348 NItAG~-~~qiqaVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 348 NITAGN-QEQIQAVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HhhcCC-HHHHHHHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 999865 788899998 99999999999999999999999999887543
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=2.1e-26 Score=279.14 Aligned_cols=281 Identities=24% Similarity=0.285 Sum_probs=250.9
Q ss_pred hhhhHHHHHHHhhcC--CHHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccc
Q 046850 392 VKMTAEFLVGKLAMG--SPEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~--~~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~ 468 (686)
+...+.++++.|.++ +++.|+.|+..|+.+++.++++|..+++ .|+||.|+.+|.+++..++++|+.+|.||+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 346789999999977 7899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred cHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---chhhhHhhcCCCcHHHHHHhcccCCh---HHHHHHHH
Q 046850 469 NKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI---DDCKVMIGGRPRAIPALVGLLREGTT---AGKKDAAT 542 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~Al~ 542 (686)
++..|+..|++++|+.+|++| +.+.|++|+++|++|+.. +.++..++...|+||+|++++++++. -++..|+.
T Consensus 91 nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~ 169 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTG 169 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHH
Confidence 999999999999999999999 999999999999999987 44565655449999999999998753 35677889
Q ss_pred HHHHhcCCCCcHHH-HHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC-hhcHHHHHhCCCChHHHHHHHhcC-ChHH
Q 046850 543 ALFNLAVYNANKAS-VVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC-REGLEEIRKCRVLVPLLIDLLRFG-SAKG 619 (686)
Q Consensus 543 aL~nLs~~~~~~~~-iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~-~~~~~~i~~~~~~i~~Lv~lL~~~-s~~~ 619 (686)
+|+|||.+++++.. ++++|+++.|+.+|.++++.++..|+.+|.+++.+ ++++..+++.|+ +|.|+++|+++ ++.+
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGa-VP~LV~LL~sg~~~~V 248 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGA-VKQLLKLLGQGNEVSV 248 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCC-HHHHHHHHccCCChHH
Confidence 99999999998754 58999999999999999999999999999999864 778999999999 99999999875 4689
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCC---------HHHHHHHHHHHHHHHh
Q 046850 620 KENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGS---------LKARRKADALLRLLNR 676 (686)
Q Consensus 620 ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~---------~~~k~~A~~lL~~l~~ 676 (686)
|++|+.+|.+||+++ ++.+..+++ .|++|.|+.++...+ ...++.|.|.|.++-.
T Consensus 249 RE~AA~AL~nLAs~s-~e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 249 RAEAAGALEALSSQS-KEAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 999999999999876 778888888 999999999997544 3458999999998754
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=3.3e-26 Score=277.40 Aligned_cols=282 Identities=23% Similarity=0.276 Sum_probs=249.2
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
.+.++.|+++|++++.+.|..|++.|++++.++++++..++++|+||.|+++|.+++..++++|+|+|.|++.++++...
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 46899999999999999999999999999998899999999999999999999999999999999999999998777444
Q ss_pred -HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhh-------------------------------------hH
Q 046850 473 -IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCK-------------------------------------VM 514 (686)
Q Consensus 473 -i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~-------------------------------------~~ 514 (686)
+.+.|++++|+++|+++ +.+.++.|+++|++|+...++. ..
T Consensus 525 iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 55789999999999999 9999999999999996432111 11
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC--C
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG--C 591 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~--~ 591 (686)
.....|+++.|++++.++++++++.|+|+|.|++.+.. ++..++..|++++++.+|.+.+..++..++++|.||+. .
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 11136899999999999999999999999999998765 68889999999999999999999999999999999985 4
Q ss_pred hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 046850 592 REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALL 671 (686)
Q Consensus 592 ~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 671 (686)
+..+..+++.|+ +|.|+++|...+..+++.|+.+|.+++.++ +.+..+.. .|+++.|++++++|+++.|+.|.|+|
T Consensus 684 ~~q~~~~v~~Ga-V~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~-~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 684 ENRKVSYAAEDA-IKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALA-EDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred HHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHh-cCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 555677889999 999999999999999999999999999984 45566666 78899999999999999999999988
Q ss_pred HHHHhccc
Q 046850 672 RLLNRCCS 679 (686)
Q Consensus 672 ~~l~~~~~ 679 (686)
..+-+..+
T Consensus 760 ~~L~~~~~ 767 (2102)
T PLN03200 760 AQLLKHFP 767 (2102)
T ss_pred HHHHhCCC
Confidence 77766544
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=7.8e-26 Score=224.41 Aligned_cols=281 Identities=20% Similarity=0.235 Sum_probs=247.4
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HH
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 471 (686)
|.++.+++.+. ....-.|.+|+|+|.+++.+.......++++|+||.++.+|.+++.++++.++|+|+|++.++.. |.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 67899999995 44555789999999999998888888889999999999999999999999999999999999888 99
Q ss_pred HHHhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 472 LIMAAGAIDSIIEVLQSGK-TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.+.+.|++++++.+|.+.. ......++.|+|.||+........-...+.++|.|.+++.+.++++..+|+||+.+|+..
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 9999999999999998763 458899999999999987743332222245899999999999999999999999999988
Q ss_pred CC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 551 NA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 551 ~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
+. ..+.+++.|..+.|+.+|++++..++..|++.++|+.. ++...+.+++.|+ ++.+-.+|.+....++..|+..+.
T Consensus 274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~-L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA-LKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheeccc-HHHHHHHhcChhhhhhhhhheeec
Confidence 75 56777899999999999999999999999999999986 5556677889998 999999998888889999999999
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
|+...+ .+..+++++ .+++|+|+.++...+...|+.|+|++......
T Consensus 353 NITAGn-teqiqavid-~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 353 NITAGN-TEQIQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccccCC-HHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999876 677899998 99999999999999999999999998876543
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.5e-24 Score=215.49 Aligned_cols=276 Identities=23% Similarity=0.275 Sum_probs=252.7
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
|.+..+.++-++.+..+|+.++.+|.++.. ..+||..++.+|++|.||.+++++|.++|..+++++.|++.+..+|..+
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 455566676668899999999999999987 7899999999999999999999999999999999999999999999999
Q ss_pred HhcC--cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 474 MAAG--AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 474 ~~~g--~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
++++ .++.|+++++++ +..++..|.-+|.||+...+++..|++ .|.+|.++++|+++........+.++.|++.++
T Consensus 246 aqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 9887 999999999999 999999999999999999999999999 999999999999888788888899999999999
Q ss_pred CcHHHHHHcCcHHHHHHHhcCC-CchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 046850 552 ANKASVVVAGAVPLLIELLMDD-KAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLG 629 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~-~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~ 629 (686)
.|-.-++++|.+.+|+++|.-+ +..++-.|..+|+||+. +..++..|.+.|+ +|.+.+++..++-..++...+++..
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgA-i~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGA-IPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCc-hHHHHHHHhcCChhHHHHHHHHHHH
Confidence 9999999999999999999764 55699999999999987 7778999999999 9999999999999999999999999
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
|+.+ +.....+.+ .|++|.|+.+..+.+.+++..|++.|-.+..
T Consensus 403 Lal~--d~~k~~lld-~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 403 LALN--DNDKEALLD-SGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred HHhc--cccHHHHhh-cCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 9887 445577777 9999999999999999999998888777654
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.2e-24 Score=214.68 Aligned_cols=275 Identities=25% Similarity=0.332 Sum_probs=252.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
.+..|+..+..+..++|..++.+|.+|+. -.+||..++..|++.++..+-+++|..+|.+|..+|.|++...+||..++
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV 205 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV 205 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh
Confidence 45667777777888999999999999998 48999999999999999998899999999999999999999999999999
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCC--cHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPR--AIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
.+|++|.|+++++++ +..+++.++.++.|+..+..++..+++ .+ .+|.|++++.+++++++-.|..||.||+...+
T Consensus 206 ~aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~ 283 (550)
T KOG4224|consen 206 HAGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE 283 (550)
T ss_pred ccCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch
Confidence 999999999999999 999999999999999999999999887 66 99999999999999999999999999999999
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcC-ChHHHHHHHHHHHHhh
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFG-SAKGKENSITLLLGLC 631 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~ 631 (686)
....++++|.+|.++++|.++.....-..+.++.|++.+|-+...|.++|. +..|+++|+.+ ++++|-+|+.+|++|+
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagf-l~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGF-LRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccc-hhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 999999999999999999998888888899999999999999999999998 99999999985 5569999999999999
Q ss_pred ccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 632 KDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 632 ~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
... +..+..+.+ .|++|.+.+|+.++.-.+|......+..+.
T Consensus 363 ass-e~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 363 ASS-EHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhh-hhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 864 555566666 999999999999999999988887777764
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.8e-23 Score=218.69 Aligned_cols=284 Identities=22% Similarity=0.237 Sum_probs=252.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCH-HHHHHHHHHhhccccccccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDP-RIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~-~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
+.++.++.+|.+++.+++.+|+|+|.+++.+++..|..+.+.|++++|+.++...+. ....+++|+|.||+.+......
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 678999999999999999999999999999999999999999999999999988776 7889999999999988643222
Q ss_pred -HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 -IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 -i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
-.-..+++.|..++.+. +.++...|+|+|.+|+.++.-+..++-..|++|.|+++|.+.++.++..|+.++.|++.++
T Consensus 232 ~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~ 310 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS 310 (514)
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence 22346799999999999 9999999999999999887666555545999999999999999999999999999999988
Q ss_pred C-cHHHHHHcCcHHHHHHHhc-CCCchhHHHHHHHHHHHh-CChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 552 A-NKASVVVAGAVPLLIELLM-DDKAGITDDALAVLALLL-GCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 552 ~-~~~~iv~~G~v~~Ll~lL~-~~~~~v~~~al~~L~nLa-~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
+ ..+.++..|+++.|..+|. ++...++.+|++++.|++ ++.+..++++++|. +|.|+.+|+++.-+.|..|+.++.
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l-~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANL-IPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHccc-HHHHHHHHhccchHHHHHHHHHHH
Confidence 8 5666789999999999998 556669999999999996 57778999999999 999999999999999999999999
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCCSQ 680 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 680 (686)
|++..+.++....|++ .|++++|..++.-.+.+.-..+...|..+....+.
T Consensus 390 N~ts~g~~~qi~yLv~-~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVE-QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred hhcccCCHHHHHHHHH-cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999777888877777788877765544
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=8.5e-21 Score=188.77 Aligned_cols=278 Identities=21% Similarity=0.157 Sum_probs=239.7
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC--CHHHHHHHHHHhhcccccccc--
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH--DPRIQENAVTALLNLSIFDNN-- 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~~-- 469 (686)
+.+|.++.+|.+++.+++.+++|+|.+++.+++..|..+.++|++.+++.+|.+. +..+..++.|+|.||+.....
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence 5789999999999999999999999999999999999999999999999998775 457889999999999976433
Q ss_pred -HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 470 -KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 470 -k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
-..|. .++|.|.+++.+. +.++...|+|++.+|+..+.-+..++-..|+.+.|+++|.+++..++.-|+..+.|+.
T Consensus 237 ~w~~is--qalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 237 DWSNIS--QALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred chHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 22222 3689999999998 9999999999999999988555544433999999999999999999999999999999
Q ss_pred CCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHH-hCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHH
Q 046850 549 VYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALL-LGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITL 626 (686)
Q Consensus 549 ~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nL-a~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~ 626 (686)
+.++ .-+.++..|+++.+..+|.++...++.+||+++.|+ |++.+..+++++++. +|.|+.+|....-.+|..|+.+
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nl-iPpLi~lls~ae~k~kKEACWA 392 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANL-IPPLIHLLSSAEYKIKKEACWA 392 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHH
Confidence 9887 556678899999999999998889999999999999 468888999999999 9999999988777888888888
Q ss_pred HHHhhccCh--HHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 627 LLGLCKDGG--EEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 627 L~~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+.|..+++. ++....++. .|++++|..++.-.+.++-+.+.-.++.+-+
T Consensus 393 isNatsgg~~~PD~iryLv~-qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 393 ISNATSGGLNRPDIIRYLVS-QGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHhhhccccCCchHHHHHHH-ccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 899887653 678888988 9999999999987777666666655555543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=2.6e-17 Score=186.19 Aligned_cols=278 Identities=24% Similarity=0.277 Sum_probs=233.5
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
++.++.|++.|.+++.+....++..|..|+. ..+|+..+.+.|+|+.|++++.+++.+++..|+.+|.|||.+...|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 5789999999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC-ChHHH--------------
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG-TTAGK-------------- 537 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~-------------- 537 (686)
|+..|++|.|+.+|.++ ..+..+..+|.+||..++++..+.. .+++|.+++++-.+ ++++.
T Consensus 368 mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999876 4567799999999999999998888 78999888876432 22333
Q ss_pred -----------------------------------------------------------------HHHHHHHHHhcCCCC
Q 046850 538 -----------------------------------------------------------------KDAATALFNLAVYNA 552 (686)
Q Consensus 538 -----------------------------------------------------------------~~Al~aL~nLs~~~~ 552 (686)
..++++|.||...+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 334444444444333
Q ss_pred cHHHHHH-cCcHHHHHHHhcCC--CchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHHHHH
Q 046850 553 NKASVVV-AGAVPLLIELLMDD--KAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSITLL 627 (686)
Q Consensus 553 ~~~~iv~-~G~v~~Ll~lL~~~--~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L 627 (686)
+...+++ .+.+|-|...|..+ .+++.-+++.+++.+|..+.....+.+.|. ++.|+++|.. .+.+..-..+.++
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl-i~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL-IPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh-HHHHHHHHHhhCchHHHHHHHHHHH
Confidence 3344443 46677777777443 457888899999999999999999999898 9999999987 4577888899999
Q ss_pred HHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 628 LGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 628 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
.++..+ +..+..++.+.+++..|+.++++.++.+|+-|..+|-++.++.
T Consensus 603 ~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 603 YQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 999999 5677788777889999999999999999999999999997764
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=4.1e-16 Score=176.55 Aligned_cols=255 Identities=20% Similarity=0.261 Sum_probs=214.5
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHH
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVL 486 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL 486 (686)
.....+.+...|.+++. +..+...+.+.|+|+.|+++|.+++.++...++++|.+||...+||..|.+.|++++|++++
T Consensus 262 QeqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 34455678888999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHH
Q 046850 487 QSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLL 566 (686)
Q Consensus 487 ~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~L 566 (686)
.++ +.+.+..+..+|+|||.+++.|..++. .|++|.|+.+|.+++ .+..++.+|++||..+++|..+...+++|.+
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L 416 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQL 416 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHH
Confidence 999 889999999999999999999999999 999999999998654 4567999999999999999999999999999
Q ss_pred HHHhcC-CCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcC
Q 046850 567 IELLMD-DKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLIN 645 (686)
Q Consensus 567 l~lL~~-~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 645 (686)
+++|.. ++..+...+++++.|||.++.+.+.+.+.++ ++.|++..-.... ...+.++.|++.+.++. +.++
T Consensus 417 ~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~g-L~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~--k~~f-- 488 (708)
T PF05804_consen 417 MQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNG-LQSLMKRALKTRD---PLLLKLIRNISQHDGPL--KELF-- 488 (708)
T ss_pred HHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCc-HHHHHHHHHhccc---HHHHHHHHHHHhcCchH--HHHH--
Confidence 998854 4566667789999999999999999998888 9999985543222 23457899999997542 2222
Q ss_pred CCChHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 046850 646 PRSIPSLQSLTTDG-SLKARRKADALLRLL 674 (686)
Q Consensus 646 ~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l 674 (686)
.+.+..|..++.++ ++...-.+..+|..+
T Consensus 489 ~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 489 VDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 23588888888777 444555555555554
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.71 E-value=9e-18 Score=136.53 Aligned_cols=72 Identities=51% Similarity=0.967 Sum_probs=63.1
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCC
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNN 351 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 351 (686)
+|++|.||||+++|.|||++++||||||.||++|+..++.+||.|++.+....+.||..+++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 588999999999999999999999999999999999988999999999999899999999999999999875
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.65 E-value=4.2e-14 Score=156.76 Aligned_cols=280 Identities=25% Similarity=0.255 Sum_probs=229.3
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc---ccH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD---NNK 470 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~---~~k 470 (686)
..++..+.+|.+.++.+|-.|+..|..+++++.+.|..+.+.|+|+.||.+|.+.+.+++.+|+++|.||.... .||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 56788899999999999999999999999999999999999999999999999999999999999999998764 468
Q ss_pred HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHh-----------------------------------
Q 046850 471 ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMI----------------------------------- 515 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i----------------------------------- 515 (686)
..|.+.++++.++++|+...+.++++..+++|+||+++|..+..|
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~ 392 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR 392 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence 899999999999999998559999999999999999886444332
Q ss_pred --------------------hcCCCcHHHHHHhccc--------------------------------------------
Q 046850 516 --------------------GGRPRAIPALVGLLRE-------------------------------------------- 531 (686)
Q Consensus 516 --------------------~~~~g~i~~Lv~lL~~-------------------------------------------- 531 (686)
.+..|.|..|+..+++
T Consensus 393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~ 472 (717)
T KOG1048|consen 393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL 472 (717)
T ss_pred hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence 2234566666665540
Q ss_pred ----------------------------------------------------------CChHHHHHHHHHHHHhcCCCC-
Q 046850 532 ----------------------------------------------------------GTTAGKKDAATALFNLAVYNA- 552 (686)
Q Consensus 532 ----------------------------------------------------------~~~~~~~~Al~aL~nLs~~~~- 552 (686)
.++.+.+.+++||.||+....
T Consensus 473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence 112334667777777775443
Q ss_pred ----cHHHH-HHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCC------hHHHH
Q 046850 553 ----NKASV-VVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGS------AKGKE 621 (686)
Q Consensus 553 ----~~~~i-v~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s------~~~ke 621 (686)
.+..+ .+..+.++|+.+|..++..++..++.+|.||+.+...+..|. ..+ ++.|++.|..+. .+.--
T Consensus 553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a-~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYA-IPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cch-HHHHHHhCcCCCCCcCchHHHHH
Confidence 23333 566788999999999999999999999999999999988877 567 899999998732 46777
Q ss_pred HHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Q 046850 622 NSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNRC 677 (686)
Q Consensus 622 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 677 (686)
.++.+|+++...+ ......+.+ .+.++.|+.|..+. +++.-+.|..+|..|..+
T Consensus 631 ~vc~tl~niv~~~-~~nAkdl~~-~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 631 AVCHTLNNIVRKN-VLNAKDLLE-IKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHhHHHHHHHh-HHHHHHHHh-ccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 8899999999776 555667777 78899999998877 668888888888888664
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.8e-13 Score=136.92 Aligned_cols=274 Identities=18% Similarity=0.212 Sum_probs=231.2
Q ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhcccccccc---
Q 046850 396 AEFLVGKLA--MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDNN--- 469 (686)
Q Consensus 396 i~~Lv~~L~--s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~--- 469 (686)
...++..|. +.+.++-...+..++.-+..++.||..+++.++.|.+...|.. +...+...+.+++..|..+++.
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 345556665 5567778888889998888899999999999999999976654 4456888899999999877643
Q ss_pred -------HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCCh----HHHH
Q 046850 470 -------KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTT----AGKK 538 (686)
Q Consensus 470 -------k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~ 538 (686)
-..|+..|++..|++.++-+.++.....+..+|..|+..++.+..|.+ .|++..|+.++.+.+. ...+
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k 305 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAK 305 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHH
Confidence 345667789999999999988889999999999999999999999999 9999999999987432 3567
Q ss_pred HHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc--CCCchhHHHHHHHHHHHh-CChhcHHHHHhCCCChHHHHHHHhcC
Q 046850 539 DAATALFNLAVYNANKASVVVAGAVPLLIELLM--DDKAGITDDALAVLALLL-GCREGLEEIRKCRVLVPLLIDLLRFG 615 (686)
Q Consensus 539 ~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~--~~~~~v~~~al~~L~nLa-~~~~~~~~i~~~~~~i~~Lv~lL~~~ 615 (686)
.++..|..|+.+++++..+++.|+.+.++.++. ..++.+...++.++.-|| +.|+....+++.|+ -...++-++..
T Consensus 306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~-a~~avqAmkah 384 (461)
T KOG4199|consen 306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA-ADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch-HHHHHHHHHhC
Confidence 899999999999999999999999999999983 468899999999999998 58888889999998 78888888763
Q ss_pred --ChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 616 --SAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 616 --s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
...++.+|+..+.|+..++ .+.+..+.. ..++.|+...+..++..+..|...||-+
T Consensus 385 P~~a~vQrnac~~IRNiv~rs-~~~~~~~l~--~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRS-AENRTILLA--NGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhh-hhccchHHh--ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 3458899999999999987 455566664 3588999999999999998888888865
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.62 E-value=7.5e-14 Score=141.13 Aligned_cols=191 Identities=24% Similarity=0.267 Sum_probs=171.4
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
..++.|+..|+ +.++.+|..|+.++.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 35689999999 5689999999999999887 789999999999999999999999999999999999999999999887
Q ss_pred HHhcCcHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIEVLQSG-KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~-~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
|-. +++.+++...+. .+.+.+..+..+|.||+..+++...+.. .++.|+.+|..|+..++..++++|.||+.++
T Consensus 91 Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 91 IKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 743 577777765554 3678899999999999999988888754 7999999999999999999999999999999
Q ss_pred CcHHHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhC
Q 046850 552 ANKASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLG 590 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~ 590 (686)
.+...++.++++..++.++.. .+..+...++.++.||..
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999966 477889999999999975
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=3e-14 Score=163.06 Aligned_cols=286 Identities=22% Similarity=0.213 Sum_probs=230.0
Q ss_pred HHhhhhHHHHHHHhhcC-------CHHHHH-HHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC---------C---C
Q 046850 390 DAVKMTAEFLVGKLAMG-------SPEIQS-QAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS---------H---D 449 (686)
Q Consensus 390 ~~~~~~i~~Lv~~L~s~-------~~~~q~-~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s---------~---~ 449 (686)
+..+.+..++-..|.++ ..+-|. .|+..|-.+++ ++++|..+.+-|++..+-+||.- + .
T Consensus 286 eQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~ 364 (2195)
T KOG2122|consen 286 EQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGEC 364 (2195)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 33444555555555533 123354 78888888888 78999999999999999887752 1 3
Q ss_pred HHHHHHHHHHhhcccccccc-HHHHHh-cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hhhHhhcCCCcHHHHH
Q 046850 450 PRIQENAVTALLNLSIFDNN-KILIMA-AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-CKVMIGGRPRAIPALV 526 (686)
Q Consensus 450 ~~~~~~A~~aL~nLs~~~~~-k~~i~~-~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv 526 (686)
..++.+|..+|.||...+.+ |..+.. .|.++.+|..|.+. .+++....+.+|.||++.-+ |-..+....|-+-.|+
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa 443 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALA 443 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHH
Confidence 46899999999999988755 777775 59999999999998 88999999999999998663 4444444488888888
Q ss_pred Hhc-ccCChHHHHHHHHHHHHhcCCCC-cHHHHHH-cCcHHHHHHHhcC----CCchhHHHHHHHHHHHhC----ChhcH
Q 046850 527 GLL-REGTTAGKKDAATALFNLAVYNA-NKASVVV-AGAVPLLIELLMD----DKAGITDDALAVLALLLG----CREGL 595 (686)
Q Consensus 527 ~lL-~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~-~G~v~~Ll~lL~~----~~~~v~~~al~~L~nLa~----~~~~~ 595 (686)
... ........+..+.|||||+.+.. |+..|-. .|++..|+.+|.- ....+++.+-+||.|++. +.+.|
T Consensus 444 ~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yR 523 (2195)
T KOG2122|consen 444 ACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYR 523 (2195)
T ss_pred HHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHH
Confidence 764 55556788999999999998764 9999987 5999999999943 467789999999999864 66667
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
+.+.+++. +..|++.|.+.+-.+..+++++||||...+++ ..+.|++ .|+++.|..|+.+.+...-.-+++.|+++-
T Consensus 524 QILR~~NC-Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~-DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 524 QILRRHNC-LQTLLQHLKSHSLTIVSNACGTLWNLSARSPE-DQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred HHHHHhhH-HHHHHHHhhhcceEEeecchhhhhhhhcCCHH-HHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 77777776 99999999999999999999999999998744 4477777 999999999999998888888888888887
Q ss_pred hcccc
Q 046850 676 RCCSQ 680 (686)
Q Consensus 676 ~~~~~ 680 (686)
++.++
T Consensus 601 n~RPA 605 (2195)
T KOG2122|consen 601 NFRPA 605 (2195)
T ss_pred cCCch
Confidence 87744
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.53 E-value=8.9e-14 Score=159.32 Aligned_cols=228 Identities=19% Similarity=0.159 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc-cc-HHHHHhcCcHHHHHH
Q 046850 408 PEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NN-KILIMAAGAIDSIIE 484 (686)
Q Consensus 408 ~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~-k~~i~~~g~l~~Lv~ 484 (686)
...++.|..+|.+|.+++..||..+.. .|++..+|..|.+...++....+.+|.||++.- .| |+.+-+.|-+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 457899999999999999999998887 599999999999988899999999999999984 44 666778899999988
Q ss_pred HHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccC----ChHHHHHHHHHHHHhcC----CCCcHH
Q 046850 485 VLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREG----TTAGKKDAATALFNLAV----YNANKA 555 (686)
Q Consensus 485 lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~----~~~~~~ 555 (686)
+--....+.+....+.+||||+-+. +||..|..+.|++..||.+|... ...+.+.|-++|.|.+. +.+.|+
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 8665546678999999999999887 79999999899999999999764 34889999999999875 455788
Q ss_pred HHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHh-CChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 046850 556 SVVVAGAVPLLIELLMDDKAGITDDALAVLALLL-GCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 556 ~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa-~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 634 (686)
.+.++..+..|++.|++.+..++..+|++||||+ ++++.++.+++.|+ ++.|..++++.+..+-+-++.+|.||..+.
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gA-v~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGA-VPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhccc-HHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 8899999999999999999999999999999995 69999999999999 999999999999999999999999999876
Q ss_pred hH
Q 046850 635 GE 636 (686)
Q Consensus 635 ~~ 636 (686)
+.
T Consensus 604 PA 605 (2195)
T KOG2122|consen 604 PA 605 (2195)
T ss_pred ch
Confidence 43
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=4.4e-12 Score=127.11 Aligned_cols=268 Identities=16% Similarity=0.179 Sum_probs=214.4
Q ss_pred cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC--CCHHHHHHHHHHhhccc-cccccHHHHHhcCcHHH
Q 046850 405 MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS--HDPRIQENAVTALLNLS-IFDNNKILIMAAGAIDS 481 (686)
Q Consensus 405 s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs-~~~~~k~~i~~~g~l~~ 481 (686)
+++...-.+++.+|..+....+. +.++.+...++.+|.. ++.++....+..+..-+ .++.||..+++.++++.
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L 193 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL 193 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 56777788899999888876654 4556788889998853 56666666666665544 45677999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCchh----------hhHhhcCCCcHHHHHHhcccC-ChHHHHHHHHHHHHhcCC
Q 046850 482 IIEVLQSGKTMEARENAAATIFSLSMIDDC----------KVMIGGRPRAIPALVGLLREG-TTAGKKDAATALFNLAVY 550 (686)
Q Consensus 482 Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~----------~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~ 550 (686)
+...|.......+...+.+++.-|...++. ...|.. .|++..|++.+.-+ +|.....++.+|..|+..
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 998877643556778889999999877743 444555 67889999999765 578999999999999999
Q ss_pred CCcHHHHHHcCcHHHHHHHhcC-CC---chhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHH
Q 046850 551 NANKASVVVAGAVPLLIELLMD-DK---AGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSI 624 (686)
Q Consensus 551 ~~~~~~iv~~G~v~~Ll~lL~~-~~---~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~ 624 (686)
++.+..+++.|++..|+.++.+ +. ..+...++..|..|+++++.+..|++.|+ .+.|+.++.. .+|.+.+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg-~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGG-LDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcC-hHHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999999999966 33 34567789999999999999999999999 9999986644 6888999999
Q ss_pred HHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHHHhcccc
Q 046850 625 TLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG--SLKARRKADALLRLLNRCCSQ 680 (686)
Q Consensus 625 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~~~~~ 680 (686)
.++.-||-..++. ....++ .|+-...++-++.. ...+++.|++++|+|-.....
T Consensus 352 a~i~~l~LR~pdh-sa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 352 AIISILCLRSPDH-SAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred HHHHHHHhcCcch-HHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999988544 455566 78788888877766 345789999999998665443
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.51 E-value=1.9e-14 Score=114.03 Aligned_cols=63 Identities=56% Similarity=1.040 Sum_probs=59.9
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHH
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQW 346 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 346 (686)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|++.+....+.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5789999999999999999999999999999988 78999999999888999999999999987
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.48 E-value=2.4e-12 Score=130.23 Aligned_cols=194 Identities=25% Similarity=0.261 Sum_probs=171.7
Q ss_pred HHhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh
Q 046850 433 AEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDC 511 (686)
Q Consensus 433 ~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~ 511 (686)
.+.+-+..|+.+|.. .|+.+++.|+.+|.|.+..+.++..|.+.|+++.+..+|.++ +..+++.|+.+|.||+...++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhh
Confidence 456678899999985 699999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhHhhcCCCcHHHHHHhcccC--ChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 046850 512 KVMIGGRPRAIPALVGLLREG--TTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLL 589 (686)
Q Consensus 512 ~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa 589 (686)
+..|-. .++.+.+...+. +..++..++.+|.||+..++.+..+. +.++.++.+|..++..++..++++|.||+
T Consensus 88 ~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 998843 688888766554 56889999999999998887766664 47999999999999999999999999999
Q ss_pred CChhcHHHHHhCCCChHHHHHHHhcC-ChHHHHHHHHHHHHhhcc
Q 046850 590 GCREGLEEIRKCRVLVPLLIDLLRFG-SAKGKENSITLLLGLCKD 633 (686)
Q Consensus 590 ~~~~~~~~i~~~~~~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~ 633 (686)
.++.....++.+.+ ++.++.++... +.+.-..++.+..|+..+
T Consensus 163 ~np~~~~~Ll~~q~-~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPDMTRELLSAQV-LSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHHHHHHHHhccc-hhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999998 89999999874 667788888888888654
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.41 E-value=6.9e-11 Score=132.61 Aligned_cols=279 Identities=14% Similarity=0.129 Sum_probs=220.8
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
....+.|...|.++++.++.-+++.|..++.++......+.+.++++.++..|.++|..+...|+.+|.+++.+..+-..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 35778899999999999999999999999987766677777889999999999999999999999999999998888778
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
++..+.+..|..++... +..+|..+..++.+++..++....+....|.++.++..+.++|.-++.+|+..|..|+..+.
T Consensus 156 l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH 234 (503)
T ss_pred HhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh
Confidence 88888899999999987 78899999999999987775444444438999999999999888999999999999999888
Q ss_pred cHHHHHHcCcHHHHHHHhcCC--Cc---h-hHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDD--KA---G-ITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITL 626 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~--~~---~-v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~ 626 (686)
+...+.+.|+++.|..++.+. ++ . +.-..+...++++.. .....+.....++..+..++.+.++..+..|+.+
T Consensus 235 g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dt 313 (503)
T PF10508_consen 235 GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDT 313 (503)
T ss_pred HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 999999999999999999542 22 1 223344677778774 1122222222225556667777899999999999
Q ss_pred HHHhhccChHHHHHHH-HcCCC----ChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 627 LLGLCKDGGEEVARRL-LINPR----SIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 627 L~~L~~~~~~~~~~~l-~~~~g----~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
+..+|+. .+....+ ....+ ++..+-....+++...|..+...+..+-
T Consensus 314 lg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 314 LGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 9999977 5666666 43222 3444455566677778888777776663
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.34 E-value=9.4e-11 Score=130.45 Aligned_cols=247 Identities=24% Similarity=0.213 Sum_probs=193.8
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCch--hHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhcccccc---
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMD--NRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFD--- 467 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~--~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~--- 467 (686)
+.|+.||.+|.+.+.++|+.|+++|++|.+++.. |+..|.+.++||.++.+|+. .|.++++.+..+|+||+.++
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 6899999999999999999999999999987776 99999999999999999986 79999999999999997532
Q ss_pred ----------------------------------------------------ccHHHHHh-cCcHHHHHHHHcC-----C
Q 046850 468 ----------------------------------------------------NNKILIMA-AGAIDSIIEVLQS-----G 489 (686)
Q Consensus 468 ----------------------------------------------------~~k~~i~~-~g~l~~Lv~lL~~-----~ 489 (686)
+.|.++-+ .|.|..|+..+.+ .
T Consensus 355 ~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~ 434 (717)
T KOG1048|consen 355 MLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSD 434 (717)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcc
Confidence 11445554 3677777766641 1
Q ss_pred CCHHHHHHHHHHHHHhcc--------------------------------------------------------------
Q 046850 490 KTMEARENAAATIFSLSM-------------------------------------------------------------- 507 (686)
Q Consensus 490 ~~~e~~~~aa~~L~~Ls~-------------------------------------------------------------- 507 (686)
.+....++++-+|.||+.
T Consensus 435 ~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~L 514 (717)
T KOG1048|consen 435 LDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWL 514 (717)
T ss_pred ccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceee
Confidence 134445555555555542
Q ss_pred ----------------------------------Cc-----hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 508 ----------------------------------ID-----DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 508 ----------------------------------~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
.. ..+..++....++|+|+++|..++..++..++.+|.||+
T Consensus 515 w~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls 594 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS 594 (717)
T ss_pred ecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence 22 112222223457799999999999999999999999999
Q ss_pred CCCCcHHHHHHcCcHHHHHHHhcCC------CchhHHHHHHHHHHHh-CChhcHHHHHhCCCChHHHHHHHhc-CChHHH
Q 046850 549 VYNANKASVVVAGAVPLLIELLMDD------KAGITDDALAVLALLL-GCREGLEEIRKCRVLVPLLIDLLRF-GSAKGK 620 (686)
Q Consensus 549 ~~~~~~~~iv~~G~v~~Ll~lL~~~------~~~v~~~al~~L~nLa-~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~k 620 (686)
.+..|+..|- .++++-|++.|... +.+++..++.+|.|+. .+..+...+.+.++ ++.|+-+..+ .+++.-
T Consensus 595 ~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g-~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 595 RDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG-IPKLRLISKSQHSPKEF 672 (717)
T ss_pred cCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC-hHHHHHHhcccCCHHHH
Confidence 9999998877 88999999999543 3678888999999997 68889999999999 9999998877 678888
Q ss_pred HHHHHHHHHhhccChHHHHHHHHc
Q 046850 621 ENSITLLLGLCKDGGEEVARRLLI 644 (686)
Q Consensus 621 e~A~~~L~~L~~~~~~~~~~~l~~ 644 (686)
++|..+|..|=.+ .+....+.+
T Consensus 673 kaAs~vL~~lW~y--~eLh~~~kk 694 (717)
T KOG1048|consen 673 KAASSVLDVLWQY--KELHFKLKK 694 (717)
T ss_pred HHHHHHHHHHHHH--HHHhhhHhh
Confidence 8888888777665 444444444
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1e-09 Score=114.78 Aligned_cols=277 Identities=18% Similarity=0.218 Sum_probs=206.6
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
+..+..||+.|..++.+.-......|..|+. -.+|+..+.+.|.|..|+++....+++++...+..|.|||.+...+.+
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 3577889999998888888888899999998 679999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC--------------------
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG-------------------- 532 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-------------------- 532 (686)
++..|.+|.++.+|.+. .-...|+..|..+|.++..+..+.. ..+|+.+.+.+-.+
T Consensus 382 Mv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999876 3345566677777777766666655 55665555433211
Q ss_pred ------------------------------------------------------------ChHHHHHHHHHHHHhcCCCC
Q 046850 533 ------------------------------------------------------------TTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 533 ------------------------------------------------------------~~~~~~~Al~aL~nLs~~~~ 552 (686)
+......++++|.||...+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 12333445555555555444
Q ss_pred cHHHHHH-cCcHHHHHHHhcCC--CchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHHHHH
Q 046850 553 NKASVVV-AGAVPLLIELLMDD--KAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSITLL 627 (686)
Q Consensus 553 ~~~~iv~-~G~v~~Ll~lL~~~--~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L 627 (686)
.-..+++ ...||-+-.-|..+ ..+++-..+..++..+........+..++. ++.++++|+. .+.+..-..+.+.
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~-i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL-IDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc-HHHHHHHHHhhcccchHHHHHHHHH
Confidence 4444443 35566666555432 334555556666666776666666777777 9999999987 3455556667777
Q ss_pred HHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 628 LGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 628 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
..+..+ +..+..++++...-..|+.|+.+.+..+|+-+-..|-++..+
T Consensus 617 ~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 617 LQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 777777 566677777666778999999999999998888888777654
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.24 E-value=2.1e-09 Score=120.73 Aligned_cols=273 Identities=17% Similarity=0.186 Sum_probs=215.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHHh
Q 046850 397 EFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIMA 475 (686)
Q Consensus 397 ~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~ 475 (686)
+.+...|...+.+....++..|..+... ...... ..+..+.|...|.++++.++..++..|.++..+... ...+.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 3477888887888778888888888763 233332 456788999999999999999999999999988777 444557
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cH
Q 046850 476 AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NK 554 (686)
Q Consensus 476 ~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~ 554 (686)
.+.++.++.++.++ +.++...|+.+|.+|+..+.....+.. .+.+..|..++...+..++..+..++.+++..++ ..
T Consensus 118 ~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 89999999999999 999999999999999998887777877 7889999999988788888889999999998776 56
Q ss_pred HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcC--ChHHH----HHHHHHHH
Q 046850 555 ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFG--SAKGK----ENSITLLL 628 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~--s~~~k----e~A~~~L~ 628 (686)
..+...|+++.++..|.+++.-++..|+.+|..|+.++.|.+.+.+.|. ++.|..++... +|+.. -..+....
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi-~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGI-FDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCH-HHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 6677789999999999998888999999999999999999999999999 99999998762 33111 12334555
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+++...+....... ..++..|..++.++++..+..|-..+-.+....
T Consensus 275 ~la~~~~~~v~~~~---p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 275 NLARVSPQEVLELY---PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV 321 (503)
T ss_pred HHHhcChHHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH
Confidence 66664333332221 224556667777788887877777777765443
No 24
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.24 E-value=6.7e-10 Score=114.89 Aligned_cols=266 Identities=15% Similarity=0.112 Sum_probs=202.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC----CC---HHHHHHHHHHhhccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS----HD---PRIQENAVTALLNLSIF 466 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s----~~---~~~~~~A~~aL~nLs~~ 466 (686)
+.++-|.+...|++.++-.+..++|.++++++.++|..+.+.|+-..++..|+. ++ .+....+...|.|-..+
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~ 166 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD 166 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence 356677777778889999999999999999999999999999997777777753 23 35666677888998877
Q ss_pred ccc-HHHHHhcCcHHHHHHHHcCCC---------------------------------------------CHHHHHHHHH
Q 046850 467 DNN-KILIMAAGAIDSIIEVLQSGK---------------------------------------------TMEARENAAA 500 (686)
Q Consensus 467 ~~~-k~~i~~~g~l~~Lv~lL~~~~---------------------------------------------~~e~~~~aa~ 500 (686)
.+. +.+.++.|+++.|...+.-+. .+..++....
T Consensus 167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 666 999999999997765543221 1122233344
Q ss_pred HHHHhccCchhhhHhhcCCC--------------------------------------------------cHHHHHHhcc
Q 046850 501 TIFSLSMIDDCKVMIGGRPR--------------------------------------------------AIPALVGLLR 530 (686)
Q Consensus 501 ~L~~Ls~~~~~~~~i~~~~g--------------------------------------------------~i~~Lv~lL~ 530 (686)
+|...+.++..+-.++. .| +++.+++.+.
T Consensus 247 ila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 247 ILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 44444444444433333 33 3344444444
Q ss_pred cCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC-----CCchhHHHHHHHHHHHhCChhcHHHHHhCCCCh
Q 046850 531 EGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMD-----DKAGITDDALAVLALLLGCREGLEEIRKCRVLV 605 (686)
Q Consensus 531 ~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~-----~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i 605 (686)
+.+......+.-+|+|+++.++++..+++.|.+..|+.+|.. ++...+-.++.+|+||..-..++..++.+|. +
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv-t 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV-T 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch-H
Confidence 566677888999999999999999999999999999999942 4677888899999999998889999999999 9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHH
Q 046850 606 PLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLK 662 (686)
Q Consensus 606 ~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~ 662 (686)
..+..+++..+|.++..-.+.|..+- .+.+.....+.+....+..|+...++.+..
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~-d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIR-DSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHH-hchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 99999999999999999999876665 444557777877566788888888877543
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.20 E-value=2.5e-10 Score=102.24 Aligned_cols=117 Identities=31% Similarity=0.356 Sum_probs=107.2
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-DDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.+.+.|+++.++++|.++ +.+.+..++++|.+++.. ++....+.. .|+++.|+++|.+++++++..|+++|+||+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 467889999999999999 899999999999999998 567777777 89999999999999999999999999999998
Q ss_pred CC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 551 NA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 551 ~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
.+ ....+++.|+++.|+++|.+.+..+++.++.+|.+|+.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 75 67778889999999999999899999999999999973
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.17 E-value=3e-10 Score=101.71 Aligned_cols=117 Identities=32% Similarity=0.416 Sum_probs=106.1
Q ss_pred HHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc
Q 046850 431 IIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID 509 (686)
Q Consensus 431 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~ 509 (686)
.+++.|+++.++++|.+++..++..|+.+|.+++.+ +..+..+.+.|+++.++.+|.++ +.+++..++++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 467889999999999999999999999999999998 55588888899999999999998 9999999999999999988
Q ss_pred h-hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 510 D-CKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 510 ~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
. ....+.. .|+++.|++++.+++.++++.|+++|.||+.
T Consensus 81 ~~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4 4555666 8999999999999999999999999999974
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.14 E-value=2.9e-11 Score=86.46 Aligned_cols=39 Identities=36% Similarity=0.861 Sum_probs=31.4
Q ss_pred cccCcccCcCceEccCcccccHHhHHHHHhhCC---CCCCCC
Q 046850 286 CPISLDLMRDPVIVASGHTYDRNSIAQWINSGH---HTCPKS 324 (686)
Q Consensus 286 Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~---~~CP~c 324 (686)
||||+++|++||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998732 479986
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.3e-08 Score=104.76 Aligned_cols=256 Identities=22% Similarity=0.266 Sum_probs=177.2
Q ss_pred HHHHHHHhhc---CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 396 AEFLVGKLAM---GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 396 i~~Lv~~L~s---~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
+..+.+.++. .....-+.|+..|.++|. +...-..+...+.|..||+.|...+.++....+..|..||...+||..
T Consensus 262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~ 340 (791)
T KOG1222|consen 262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIV 340 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHH
Confidence 4444444441 234445678888999998 566677788889999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHH-------
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALF------- 545 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~------- 545 (686)
+.+.|.++.|++++... .++.+......|+|||.+...+..++. .|.+|.|+.+|.+++.. .-|+..|+
T Consensus 341 M~~~~iveKL~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~-~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 341 MEQNGIVEKLLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVN-GGLLPHLASLLDSDTKH--GIALNMLYHLSCDDD 416 (791)
T ss_pred HHhccHHHHHHHhcCCC-CHHHHHHHHHHhhhccccccccHHHhh-ccchHHHHHHhCCcccc--hhhhhhhhhhccCcH
Confidence 99999999999999998 899999999999999999999999999 99999999999765431 11233333
Q ss_pred -----------------------------------HhcCCCCcHHHHHHcCcHHHHHH------------Hh--------
Q 046850 546 -----------------------------------NLAVYNANKASVVVAGAVPLLIE------------LL-------- 570 (686)
Q Consensus 546 -----------------------------------nLs~~~~~~~~iv~~G~v~~Ll~------------lL-------- 570 (686)
|||.+..|.+.+.+..++..|++ ++
T Consensus 417 ~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg 496 (791)
T KOG1222|consen 417 AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEG 496 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccc
Confidence 44444444333322222222111 11
Q ss_pred -----------------c-CCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcC--ChHHHHHHHHHHHHh
Q 046850 571 -----------------M-DDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFG--SAKGKENSITLLLGL 630 (686)
Q Consensus 571 -----------------~-~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~--s~~~ke~A~~~L~~L 630 (686)
+ +.+....-+|+++|+||.-.+-.-..+++...++|-+-..|..+ ..+..-..+-.+..+
T Consensus 497 ~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~ 576 (791)
T KOG1222|consen 497 ATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTM 576 (791)
T ss_pred hHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhh
Confidence 0 11223344566667777665555566666555578887777653 223343444444444
Q ss_pred hccChHHHHHHHHcCCCChHHHHHHHhcC
Q 046850 631 CKDGGEEVARRLLINPRSIPSLQSLTTDG 659 (686)
Q Consensus 631 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~ 659 (686)
+.. ..++..+.. +|+++.|++|++..
T Consensus 577 a~d--~~cA~Lla~-a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 577 ARD--LDCARLLAP-AKLIDTLIELLQAC 602 (791)
T ss_pred hhh--hHHHHHhCc-cccHHHHHHHHHhh
Confidence 433 445444444 89999999999876
No 29
>PRK09687 putative lyase; Provisional
Probab=99.10 E-value=1.6e-08 Score=104.73 Aligned_cols=236 Identities=19% Similarity=0.129 Sum_probs=131.0
Q ss_pred HHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccc
Q 046850 389 ADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 389 ~~~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~ 468 (686)
.++.+..++.|+..|.+.+..++..|++.|..+-. ..+++.+..++.++++.++..|+++|+.|.....
T Consensus 18 ~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 18 SQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 44455677888888888888888888888776542 2255667777788888888888888888754221
Q ss_pred cHHHHHhcCcHHHHHHH-HcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 469 NKILIMAAGAIDSIIEV-LQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~l-L~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
. ...+++.|..+ ++++ +..+|..|+.+|.++....... . ..+++.+...+.+.++.++..|+++|.++
T Consensus 87 ~-----~~~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~~~~VR~~a~~aLg~~ 155 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDK-SACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDKSTNVRFAVAFALSVI 155 (280)
T ss_pred c-----hHHHHHHHHHHHhcCC-CHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCCCHHHHHHHHHHHhcc
Confidence 1 12345666666 3444 7777888888887774322100 0 12333444444444455555555555433
Q ss_pred cCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHH----------------------HHhCCCC
Q 046850 548 AVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEE----------------------IRKCRVL 604 (686)
Q Consensus 548 s~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~----------------------i~~~~~~ 604 (686)
.. ..+++.|+.+|.+++..++..|+..|+.+.. ++..... +....+
T Consensus 156 ~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~a- 224 (280)
T PRK09687 156 ND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRV- 224 (280)
T ss_pred CC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhH-
Confidence 21 1134444444444444444444444444411 0000000 000123
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHh-cCCHHHHHHHHHHHH
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTT-DGSLKARRKADALLR 672 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~ 672 (686)
+|.|++.++.+. .+..|+.+|..+-. + -++|.|..++. +.+++++.+|.+.|+
T Consensus 225 v~~Li~~L~~~~--~~~~a~~ALg~ig~---~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 225 LSVLIKELKKGT--VGDLIIEAAGELGD---K----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHcCCc--hHHHHHHHHHhcCC---H----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 566666665433 33444444444332 1 14888888886 678899999888775
No 30
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=2.9e-10 Score=120.54 Aligned_cols=72 Identities=19% Similarity=0.373 Sum_probs=65.3
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHh
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~ 349 (686)
...+...+.||||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++++.|...
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 3467889999999999999999999999999999999986 56899999998877899999999999999664
No 31
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=2.1e-10 Score=108.41 Aligned_cols=60 Identities=30% Similarity=0.636 Sum_probs=51.7
Q ss_pred CCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhh---------------CCCCCCCCCccccCCCCCCcH
Q 046850 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS---------------GHHTCPKSGQRLIHMALIPNY 337 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~---------------~~~~CP~c~~~l~~~~l~~n~ 337 (686)
.+..++|.||||++.++|||++.|||.||+.||.+|+.. +...||.|+..+....+.|.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 355678999999999999999999999999999999853 246899999999887787765
No 32
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.99 E-value=3.5e-08 Score=102.44 Aligned_cols=280 Identities=19% Similarity=0.113 Sum_probs=209.2
Q ss_pred hHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCH-------HHHHHHHHHhhcccc
Q 046850 395 TAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDP-------RIQENAVTALLNLSI 465 (686)
Q Consensus 395 ~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~-------~~~~~A~~aL~nLs~ 465 (686)
..-.+++.|.+. .++...-....|...+. ++..+-.++++|.+..+++++.. ++. ..-..++....-|..
T Consensus 224 l~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 224 LVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 344556666644 33444444555555555 88899999999999999999875 222 233344455555566
Q ss_pred ccccHHHHHhcC-cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-----CChHHHHH
Q 046850 466 FDNNKILIMAAG-AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-----GTTAGKKD 539 (686)
Q Consensus 466 ~~~~k~~i~~~g-~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~ 539 (686)
.++.-..+.+.+ .++.+++.+.+. +......++-++.|+++.++++..+++ .|.+..|+++|.. |+.+.+..
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA 380 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHA 380 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHH
Confidence 666666666665 899999999999 889999999999999999999999999 9999999999854 56688999
Q ss_pred HHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChh-cHHHHHhCCCChHHHHHHHhcCChH
Q 046850 540 AATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCRE-GLEEIRKCRVLVPLLIDLLRFGSAK 618 (686)
Q Consensus 540 Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~-~~~~i~~~~~~i~~Lv~lL~~~s~~ 618 (686)
++.||.||...-.|+..++.+|++++++..+....+.++..-++.+..+-...+ ..-++.+...++..|+.+-++.+-.
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 999999999999999999999999999999998889999999999988876444 3334444443466667666654333
Q ss_pred -HHHHHHHHHHHhhccCh-HHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 619 -GKENSITLLLGLCKDGG-EEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 619 -~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+.......|.-+..++. .++...+.+ .|+++.++.++....--.+..|.-.|-.+...+
T Consensus 461 Gv~gESnRll~~lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 461 GVAGESNRLLLGLIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred hhhhhhhHHHHHHHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 55566677777777642 345566666 788999999888887777777766666655444
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.95 E-value=1.1e-08 Score=108.11 Aligned_cols=232 Identities=19% Similarity=0.156 Sum_probs=169.0
Q ss_pred CHHHHHHhhcC--CCHHHHHHHHHHhhccccccccHHH-HHh------cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 046850 437 AIPFLVTLLSS--HDPRIQENAVTALLNLSIFDNNKIL-IMA------AGAIDSIIEVLQSGKTMEARENAAATIFSLSM 507 (686)
Q Consensus 437 ~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~-i~~------~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~ 507 (686)
....++.+|+. .+.++..+.+..+..+..+++.+.. +.. .....+++.++.++ +..+...|+.+|..|..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 35566666653 6889999999999998887766443 333 13688899988888 99999999999999988
Q ss_pred CchhhhHhhcCCCcHHHHHHhccc----CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHh-----cC--CCch
Q 046850 508 IDDCKVMIGGRPRAIPALVGLLRE----GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELL-----MD--DKAG 576 (686)
Q Consensus 508 ~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL-----~~--~~~~ 576 (686)
....+..... .+.++.+++.+.+ ++......|+.+|.+|...++.|..+.+.|+++.+..+| .. .+..
T Consensus 135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 7765554433 4577888888765 334667889999999999999999999999999999999 22 3566
Q ss_pred hHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHH
Q 046850 577 ITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSL 655 (686)
Q Consensus 577 v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 655 (686)
+.-.++-++|.|+-+++....+...+. ++.|+++++. ..+++..-++++|.|++..........++. .|+++.+..|
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~-i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~~l~~L 291 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKKYL-IPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSH-HHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhccch-HHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHHHHHHH
Confidence 788899999999999999999999886 9999999987 577888999999999998876557777776 6666666666
Q ss_pred HhcC--CHHHHHHHHHHHH
Q 046850 656 TTDG--SLKARRKADALLR 672 (686)
Q Consensus 656 l~~~--~~~~k~~A~~lL~ 672 (686)
.... |++...-...+-.
T Consensus 292 ~~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp HSS--SSHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHh
Confidence 6555 7777665555443
No 34
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=4.2e-07 Score=100.77 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=206.3
Q ss_pred hHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccccc---
Q 046850 395 TAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS--HDPRIQENAVTALLNLSIFDN--- 468 (686)
Q Consensus 395 ~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~--- 468 (686)
+|+.|+..+.+. -.+.++.|+..|..+++ .+|..++.. ++++|+..|.. .|+++...|+.+++++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 788899888754 57889999999999998 578777655 57888888876 589999999999999987663
Q ss_pred ---c-H----------HHHH-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhccc
Q 046850 469 ---N-K----------ILIM-AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLLRE 531 (686)
Q Consensus 469 ---~-k----------~~i~-~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~ 531 (686)
+ + +.++ ..+.|..++..+... +--+|..++..|.+|-... +.+..+...+-+|..|+.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 2 2 1222 358899999999988 8899999999999995443 6777776658999999999998
Q ss_pred CChHHHHHHHHHHHHhcCCCCcHHHHHH-cCcHHHHHHHhcCC----CchhHHHHHHHHHHHhCChh-cHHHHHhCCCCh
Q 046850 532 GTTAGKKDAATALFNLAVYNANKASVVV-AGAVPLLIELLMDD----KAGITDDALAVLALLLGCRE-GLEEIRKCRVLV 605 (686)
Q Consensus 532 ~~~~~~~~Al~aL~nLs~~~~~~~~iv~-~G~v~~Ll~lL~~~----~~~v~~~al~~L~nLa~~~~-~~~~i~~~~~~i 605 (686)
....++.+|+..|..|+..+++.+++|. .+++..|+.++... ..-+++.|+..|.||-.+.. ++..+.+.+- +
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~-i 256 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY-I 256 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc-H
Confidence 8888999999999999999998888887 58999999999542 34688999999999987544 4555555555 9
Q ss_pred HHHHHHHhc---CChH----------HHHHHHHHHHHhhccChH----HHH-HHHHcCCCChHHHHHHHhcC--CHHHHH
Q 046850 606 PLLIDLLRF---GSAK----------GKENSITLLLGLCKDGGE----EVA-RRLLINPRSIPSLQSLTTDG--SLKARR 665 (686)
Q Consensus 606 ~~Lv~lL~~---~s~~----------~ke~A~~~L~~L~~~~~~----~~~-~~l~~~~g~i~~L~~Ll~~~--~~~~k~ 665 (686)
|.|.++|.. ++.+ .-..|+.++..+..-++. ... ..+.. .+++..|..++... ...++.
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS-SHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cchHHHHHHHHcCCCCcHhHHH
Confidence 999988765 3321 112455555555553331 233 34555 78899888877655 334555
Q ss_pred HHHHHHHHHHhcccc
Q 046850 666 KADALLRLLNRCCSQ 680 (686)
Q Consensus 666 ~A~~lL~~l~~~~~~ 680 (686)
.+--.+...-+....
T Consensus 336 esiitvAevVRgn~~ 350 (970)
T KOG0946|consen 336 ESIITVAEVVRGNAR 350 (970)
T ss_pred HHHHHHHHHHHhchH
Confidence 544444444443333
No 35
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.83 E-value=1.3e-07 Score=100.17 Aligned_cols=224 Identities=17% Similarity=0.150 Sum_probs=164.9
Q ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhhCchhHHHHHH------hCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc
Q 046850 396 AEFLVGKLA--MGSPEIQSQAAYELRLLAKTGMDNRRIIAE------AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD 467 (686)
Q Consensus 396 i~~Lv~~L~--s~~~~~q~~al~~L~~La~~~~~~r~~i~~------~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~ 467 (686)
...++..|+ +.+.++....+..+..+..+++.....+.. .....++++++.++|.-++..|+.+|..|....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 344444444 468888999999999998878766666665 125778888999999999999999999998776
Q ss_pred ccHHHHHhcCcHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhc-----ccC--ChHHH
Q 046850 468 NNKILIMAAGAIDSIIEVLQSGK---TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLL-----REG--TTAGK 537 (686)
Q Consensus 468 ~~k~~i~~~g~l~~Lv~lL~~~~---~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-----~~~--~~~~~ 537 (686)
..+..-...+.++.++..|.+.. +.+.+..++.+|.+|...+++|..+.. .++++.|++++ ..+ +....
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~ 215 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQ 215 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHH
Confidence 66444444677888888888642 345668999999999999999999999 99999999999 222 35889
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhCChh--cHHHHHhCCCChHHHHHHHhc
Q 046850 538 KDAATALFNLAVYNANKASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLGCRE--GLEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 538 ~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~~~~--~~~~i~~~~~~i~~Lv~lL~~ 614 (686)
..++.++|-|+.+++....+...++++.|++++.. ....+.+-++++|.||...+. ....++..+. +.+++.|..
T Consensus 216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~--l~~l~~L~~ 293 (312)
T PF03224_consen 216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL--LKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H--HHHHHHHHS
T ss_pred HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH--HHHHHHHhc
Confidence 99999999999999999999999999999999954 567899999999999998655 6777888775 455554543
Q ss_pred ---CChHHHHH
Q 046850 615 ---GSAKGKEN 622 (686)
Q Consensus 615 ---~s~~~ke~ 622 (686)
+++++.+-
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 56666554
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.82 E-value=1.2e-09 Score=108.99 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=63.8
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHh
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~ 349 (686)
.+..-++|-||.++|+-||+++||||||.-||.+++.. +..||.|...+....++-|..+..+|+.+...
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999987 89999999999888899999999999888554
No 37
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.80 E-value=3.5e-09 Score=74.86 Aligned_cols=38 Identities=37% Similarity=0.934 Sum_probs=33.4
Q ss_pred cccCcccCcCc-eEccCcccccHHhHHHHHhhCCCCCCCC
Q 046850 286 CPISLDLMRDP-VIVASGHTYDRNSIAQWINSGHHTCPKS 324 (686)
Q Consensus 286 Cpic~~~m~dP-v~~~cght~cr~ci~~w~~~~~~~CP~c 324 (686)
||||.+.+.+| ++++|||+||+.||.+|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 56799999999999999998 7899986
No 38
>PRK09687 putative lyase; Provisional
Probab=98.79 E-value=2.2e-07 Score=96.21 Aligned_cols=194 Identities=18% Similarity=0.116 Sum_probs=144.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhh
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIG 516 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~ 516 (686)
-++.|..+|.++|..++..|+.+|..+.. ..+++.+..++.++ +..+|..++++|..|...+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSK-NPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc-----
Confidence 47889999999999999999999988752 45778888888888 999999999999998654321
Q ss_pred cCCCcHHHHHHh-cccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcH
Q 046850 517 GRPRAIPALVGL-LREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 517 ~~~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
. ..+++.|..+ +++.++.++..|+.+|.+++...... ...++..+...+.+++..++..++.+|..+..
T Consensus 88 ~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 88 Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 1 3478888887 67778899999999999997544321 11245567777788889999999999976642
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRL 673 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 673 (686)
..+ ++.|+.++...++.++..|+..|..+.... +. +++.|+.++.+.++.+|..|.+.|..
T Consensus 158 -----~~a-i~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-~~----------~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 -----EAA-IPLLINLLKDPNGDVRNWAAFALNSNKYDN-PD----------IREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred -----HHH-HHHHHHHhcCCCHHHHHHHHHHHhcCCCCC-HH----------HHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 124 888899998888889999999988884332 21 24555556666666666666666543
No 39
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9.2e-07 Score=91.30 Aligned_cols=185 Identities=19% Similarity=0.166 Sum_probs=155.4
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHH
Q 046850 404 AMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSI 482 (686)
Q Consensus 404 ~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~L 482 (686)
.+.+.+.+..|+..|..+.. +.+|-.-+...|+..+++.++.+.+..+++.|+++|+..+.+++. +..+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 35688999999999999998 789999999999999999999999999999999999999988766 8899999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchh-hhHhhcCCCcHHHHHHhcccC--ChHHHHHHHHHHHHhcCCCC-cHHHHH
Q 046850 483 IEVLQSGKTMEARENAAATIFSLSMIDDC-KVMIGGRPRAIPALVGLLREG--TTAGKKDAATALFNLAVYNA-NKASVV 558 (686)
Q Consensus 483 v~lL~~~~~~e~~~~aa~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~Al~aL~nLs~~~~-~~~~iv 558 (686)
+..|.+..+..++..|..++.+|-.+... ...+.. .++...|.+.+.++ +.+.+..++..+.+|..... ....+-
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999876888999999999999998854 445555 67799999999984 56889999999999987665 444444
Q ss_pred HcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 559 VAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 559 ~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
..|....+..+....+..+.+.++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 55767777777776777788888777666654
No 40
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.76 E-value=2.6e-07 Score=96.73 Aligned_cols=265 Identities=15% Similarity=0.143 Sum_probs=193.1
Q ss_pred hhhHHHHHHHhhcCCHHH--HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhcccccccc
Q 046850 393 KMTAEFLVGKLAMGSPEI--QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~--q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
.+.+..|++++.+++.+. +.+|.+.|..+.. .+|+..++.-| ...++.+-+. +.++.+...+.+|.++-++++.
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 367789999999988776 7889999988765 58999999877 5555555543 5678888999999999998766
Q ss_pred -HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHH
Q 046850 470 -KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFN 546 (686)
Q Consensus 470 -k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 546 (686)
...++++|++..++-..+.. ++....+++-+|.|+..+. +.+..|++ ..+-..|+.+..+.+.-.+..|+-|.+.
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 88899999999999999888 8899999999999998876 57788888 8889999999888888889999999999
Q ss_pred hcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHH
Q 046850 547 LAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITL 626 (686)
Q Consensus 547 Ls~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~ 626 (686)
|+++.+.-..+-.+|.+..+-.++.+.++.-... .-..+..|+. .+. +..|+.+|++. +.--.++++
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~~----~d~-LqRLvPlLdS~--R~EAq~i~A 400 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGRG----PDD-LQRLVPLLDSN--RLEAQCIGA 400 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccCC----hHH-HHHhhhhhhcc--hhhhhhhHH
Confidence 9999887777777776555444444333221100 0001111111 113 67888888743 333334444
Q ss_pred HHHhhccC---hHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 627 LLGLCKDG---GEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 627 L~~L~~~~---~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
..+|... .......++.+-|+|+.|.++..+.+....+-|...|.++.+
T Consensus 401 -F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 401 -FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred -HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 3344321 122223344447889999999998888888889999999865
No 41
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.8e-07 Score=101.77 Aligned_cols=257 Identities=19% Similarity=0.140 Sum_probs=199.5
Q ss_pred hHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhhCchhHHHHHHhCCHHHHHHhhcCC-CHHHHHHHHHHhhcccccccc-H
Q 046850 395 TAEFLVGKLAMG-SPEIQSQAAYELRL-LAKTGMDNRRIIAEAGAIPFLVTLLSSH-DPRIQENAVTALLNLSIFDNN-K 470 (686)
Q Consensus 395 ~i~~Lv~~L~s~-~~~~q~~al~~L~~-La~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~-k 470 (686)
-+..|+..|... ++..|.+|+.+|.. |...+.+.-..|--.-+||.|+.+|+.+ +.+++..|+++|.+|..--+. .
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 567888888854 88999999999964 5666666655555566899999999974 789999999999999876444 6
Q ss_pred HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 471 ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
..+++.++||.|+.-|..-.-..+-+++..+|-.+|..+. ..|.. .|++...+..|.--+..+++.|+.+..|+|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777899999999988775478899999999999998753 33445 78899888888766788999999999999964
Q ss_pred --CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC----ChhcHHHHHhCCCChHHHHHHHhcC----ChHHH
Q 046850 551 --NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG----CREGLEEIRKCRVLVPLLIDLLRFG----SAKGK 620 (686)
Q Consensus 551 --~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~----~~~~~~~i~~~~~~i~~Lv~lL~~~----s~~~k 620 (686)
++.-..+.+ ++|.|-.+|...+...++.++.++..++. .++--+++...+. +.....+|... +....
T Consensus 325 i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dL-i~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDL-ITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhH-HHHHHHHHhcCcccccccch
Confidence 344444444 68999999988888999999999998875 4555677777777 88888877642 33355
Q ss_pred HHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC
Q 046850 621 ENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG 659 (686)
Q Consensus 621 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~ 659 (686)
...+..|..+|++. +.....+.+ .++...|..++...
T Consensus 402 ~~vIrmls~msS~~-pl~~~tl~k-~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGS-PLLFRTLLK-LDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCC-hHHHHHHHH-hhHHHHHHHHHhcc
Confidence 56677777788776 556666666 77888888877644
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.73 E-value=2.1e-06 Score=92.80 Aligned_cols=273 Identities=15% Similarity=0.085 Sum_probs=192.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC-CHHHHHHHHHHhhccccccccHHHHHhcC
Q 046850 399 LVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH-DPRIQENAVTALLNLSIFDNNKILIMAAG 477 (686)
Q Consensus 399 Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~k~~i~~~g 477 (686)
++..|..++.-++..|...|..+...+..+.......-.+..|...|++. +...+.-|+.+|.+|...+..|..+.+.+
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 34577788889999999999988765443222111111334455566553 57788889999999999999999999999
Q ss_pred cHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-hHHHHHHHHHHHHhcCCCC---
Q 046850 478 AIDSIIEVLQSGK-TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-TAGKKDAATALFNLAVYNA--- 552 (686)
Q Consensus 478 ~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~--- 552 (686)
+++.|+.+|+... +...+..++-+++-||..++....... .+.|+.|+++++... ..+.+-++.+|.||...+.
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccc
Confidence 9999999998764 678999999999999999887777766 899999999998754 5899999999999998542
Q ss_pred ----cHHHHHHcCcHHHHHHHhcC--CCchhHHHHHHHHH-------HHhCChh------------------------cH
Q 046850 553 ----NKASVVVAGAVPLLIELLMD--DKAGITDDALAVLA-------LLLGCRE------------------------GL 595 (686)
Q Consensus 553 ----~~~~iv~~G~v~~Ll~lL~~--~~~~v~~~al~~L~-------nLa~~~~------------------------~~ 595 (686)
....|+..|+.+.+-.+-.. .++++.+..-.+-. .+++.++ +.
T Consensus 265 ~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~ 344 (429)
T cd00256 265 VKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA 344 (429)
T ss_pred hhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH
Confidence 34566777776655444433 35555443322222 2222111 22
Q ss_pred HHHHhCC-CChHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 046850 596 EEIRKCR-VLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRL 673 (686)
Q Consensus 596 ~~i~~~~-~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 673 (686)
..+-+.+ ..+..|+++|.. .++..-.-|+.=+..++.+- +..+..+.+ .|+=..+++++.+.++.+|..|..+++-
T Consensus 345 ~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr~i~~~-lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 345 DRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGKDVVEQ-LGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHHHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2233322 136888888854 45555556666677788775 455555555 8889999999999999999999887765
Q ss_pred H
Q 046850 674 L 674 (686)
Q Consensus 674 l 674 (686)
+
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.70 E-value=3.5e-06 Score=101.54 Aligned_cols=228 Identities=21% Similarity=0.168 Sum_probs=137.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc------
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD------ 467 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~------ 467 (686)
..++.|+..|+..+..++..|+..|..+.... ...+.|...|.++|+.++..|+.+|..+...+
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~ 721 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA 721 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH
Confidence 45677777777777888887777776664211 12245566666677777777776666553111
Q ss_pred -----cc--HHHHH----hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHH
Q 046850 468 -----NN--KILIM----AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAG 536 (686)
Q Consensus 468 -----~~--k~~i~----~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 536 (686)
+. |...+ ..+..+.|...+.++ +.++|..++.+|..+... ....++.|..+++++++.+
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~V 791 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDE-NREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLV 791 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-CHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHH
Confidence 00 00000 011223344444444 555555555555444321 1223566777777777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCC
Q 046850 537 KKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGS 616 (686)
Q Consensus 537 ~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s 616 (686)
+..|+.+|.++.... .+++.++..|.+++..++..|+.+|..+.. ... ++.|+.+|...+
T Consensus 792 R~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a-~~~L~~~L~D~~ 851 (897)
T PRK13800 792 RAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVA-VPALVEALTDPH 851 (897)
T ss_pred HHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cch-HHHHHHHhcCCC
Confidence 777777776663321 122446666766677777777777765532 123 688889998888
Q ss_pred hHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 046850 617 AKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRL 673 (686)
Q Consensus 617 ~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 673 (686)
..+|..|+.+|..+- .++. ..+.|...+.+.++.+|+.|...|..
T Consensus 852 ~~VR~~A~~aL~~~~--~~~~----------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 852 LDVRKAAVLALTRWP--GDPA----------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHHhccC--CCHH----------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999999999987762 1122 25667778888899999999888763
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.70 E-value=4.9e-09 Score=79.83 Aligned_cols=59 Identities=25% Similarity=0.515 Sum_probs=34.0
Q ss_pred CCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHH
Q 046850 282 DEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLL 343 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i 343 (686)
+-++|++|.++|+.||.+ .|.|.||+.||.+.+.. .||+|..+....+++.|..+.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 457999999999999965 99999999999886543 499999998888999999998876
No 45
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9.8e-09 Score=98.77 Aligned_cols=58 Identities=29% Similarity=0.621 Sum_probs=51.2
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhh--CCCCCCCCCccccCCCCCCcH
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS--GHHTCPKSGQRLIHMALIPNY 337 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~--~~~~CP~c~~~l~~~~l~~n~ 337 (686)
.-..|.|.||++.-+|||++.|||-||+.||.+|+.. +...||+|+..+....++|-+
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 3457999999999999999999999999999999986 456789999999888887754
No 46
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.63 E-value=1.7e-08 Score=72.13 Aligned_cols=36 Identities=22% Similarity=0.757 Sum_probs=23.4
Q ss_pred cccCcccCcC----ceEccCcccccHHhHHHHHhhC---CCCCC
Q 046850 286 CPISLDLMRD----PVIVASGHTYDRNSIAQWINSG---HHTCP 322 (686)
Q Consensus 286 Cpic~~~m~d----Pv~~~cght~cr~ci~~w~~~~---~~~CP 322 (686)
||||.+ |.+ |+.++|||+||+.|+++|...+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999964 45676
No 47
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.9e-08 Score=99.64 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=47.9
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA 332 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~ 332 (686)
+..++..+.|.+|++-+.+|-.++|||.||++||..|..+ ...||.||..+....
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSK 287 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcc
Confidence 3455677999999999999999999999999999999998 677999998876543
No 48
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.62 E-value=3.2e-06 Score=101.84 Aligned_cols=217 Identities=22% Similarity=0.141 Sum_probs=142.2
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.|+..|.+.++.+|..|+..|..+.. .++++.|+..|+++++.++..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 467889999999999999999999987642 347899999999999999999999998773211
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHH-------
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFN------- 546 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n------- 546 (686)
...+.+...|.++ +..+|..|+.+|..+.. +....|+..|.+.++.++..|+.+|..
T Consensus 684 ---~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l 747 (897)
T PRK13800 684 ---PPAPALRDHLGSP-DPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESV 747 (897)
T ss_pred ---CchHHHHHHhcCC-CHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH
Confidence 1224555666665 66777777766665531 112334445555555555555555554
Q ss_pred ---------------------hcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCCh
Q 046850 547 ---------------------LAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLV 605 (686)
Q Consensus 547 ---------------------Ls~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i 605 (686)
+.... .+.++.|..++.++++.++..|+..|..+...+ .. +
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~-~ 809 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DD-V 809 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hh-H
Confidence 32211 112455566666656666666666665553210 11 3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 606 PLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 606 ~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
+.+...|.+.++.+|..|+.+|..+.. ...++.|+.++.+.+..+|+.|.+.|..+
T Consensus 810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 810 AAATAALRASAWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 455666666666677777777655432 12478899999999999999999988775
No 49
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.61 E-value=3.2e-08 Score=70.86 Aligned_cols=39 Identities=38% Similarity=1.014 Sum_probs=36.1
Q ss_pred cccCcccCcCce-EccCcccccHHhHHHHHh-hCCCCCCCC
Q 046850 286 CPISLDLMRDPV-IVASGHTYDRNSIAQWIN-SGHHTCPKS 324 (686)
Q Consensus 286 Cpic~~~m~dPv-~~~cght~cr~ci~~w~~-~~~~~CP~c 324 (686)
||||.+.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999999 567889987
No 50
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.52 E-value=4.9e-07 Score=79.91 Aligned_cols=153 Identities=17% Similarity=0.101 Sum_probs=123.9
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHH
Q 046850 476 AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKA 555 (686)
Q Consensus 476 ~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~ 555 (686)
-+++..|+.-.....+.++++...+-|.|.+.++.|-..+.. ..++..+++.|...+...++.+++.|+|+|.+..|..
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 356778888887777999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCCh-hcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 556 SVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCR-EGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 556 ~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~-~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
.+++++++|.++..++++....+-.|+..+..|+-.. ..+..++...+ +..+.++-.+.+.+.+.-|-..|-..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~V-v~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAV-VRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHH-HHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999999998888899999999998633 34556655444 44444444344444444444444333
No 51
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.6e-06 Score=84.23 Aligned_cols=184 Identities=21% Similarity=0.199 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHH
Q 046850 447 SHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPAL 525 (686)
Q Consensus 447 s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~L 525 (686)
+.+.+-++.|+.-|..+..+-+|-..+...|++.+++..+.++ +.++|+.|+++|...+.+. ..+..+.+ .|+++.|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHH
Confidence 4577888999999999998889989999999999999999998 9999999999999999877 46777777 8999999
Q ss_pred HHhcccCCh-HHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcC--CCchhHHHHHHHHHHHhCChhcHHHHHhC
Q 046850 526 VGLLREGTT-AGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMD--DKAGITDDALAVLALLLGCREGLEEIRKC 601 (686)
Q Consensus 526 v~lL~~~~~-~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~--~~~~v~~~al~~L~nLa~~~~~~~~i~~~ 601 (686)
+..|.+.++ .++..|+.|+++|..+.. ....+...++...|..+|.+ .+...+..++..+..|......-..+...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999987655 778999999999999776 78888888889999999987 57778899999999998643333334443
Q ss_pred CCChHHHH-HHHhcCChHHHHHHHHHHHHhhcc
Q 046850 602 RVLVPLLI-DLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 602 ~~~i~~Lv-~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
-+ .+..+ .+........+++|+.++..+...
T Consensus 252 ~~-f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 252 LG-FQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hh-hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 34 34444 466667888999998888777654
No 52
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.51 E-value=7.2e-08 Score=72.23 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=40.8
Q ss_pred CCcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 282 DEFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
+++.|+||++...++++.+|||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 36789999999999999999999 999999999994 889999998764
No 53
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.4e-06 Score=95.59 Aligned_cols=216 Identities=20% Similarity=0.179 Sum_probs=173.5
Q ss_pred hhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh-cCCCHHHHHHHHHHhhcccccccc
Q 046850 392 VKMTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL-SSHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 392 ~~~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
++..++.|+.+|+ ..+.+++..|+++|..++.--+..-..+++.|+||.|+.-| .-.-.++.|.++.+|..+|. ..
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~H 286 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--RH 286 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hc
Confidence 3578999999999 46899999999999999998889999999999999999744 45788999999999999986 33
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
-..+.++|++...+..|+-- +.-++..|+++..|.|..= +.-..+++ ++|.|..+|...+.+..+.++.++..+
T Consensus 287 ~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 46788999999999999887 8889999999999998643 33444444 899999999999999999999999998
Q ss_pred cCC---CC-cHHHHHHcCcHHHHHHHhcCC----CchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhc
Q 046850 548 AVY---NA-NKASVVVAGAVPLLIELLMDD----KAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 548 s~~---~~-~~~~iv~~G~v~~Ll~lL~~~----~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~ 614 (686)
+.. .+ --+++...|.+....++|.-. +..+....++.|..+|. ++.....+...+. ...|..+|..
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I-~~~L~~il~g 437 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDI-ADTLKRILQG 437 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhH-HHHHHHHHhc
Confidence 753 22 456778899999999998432 34455556677777765 4778887777776 5666666653
No 54
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.50 E-value=5.7e-08 Score=95.21 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=58.8
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQ 348 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~ 348 (686)
.+...++|-||.+.++-|+.++||||||.-||.+++.. +..||.|+.......+.-+..++..++.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 34567899999999999999999999999999999987 8999999988766667777777777777643
No 55
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.49 E-value=9.8e-08 Score=94.65 Aligned_cols=48 Identities=21% Similarity=0.531 Sum_probs=40.5
Q ss_pred CCCcccccCcccCcCc--------eEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRDP--------VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dP--------v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.++..||||++.+.++ ++.+|||.||+.||.+|... +.+||.||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 3467999999987653 45689999999999999986 789999998764
No 56
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-07 Score=87.74 Aligned_cols=55 Identities=24% Similarity=0.565 Sum_probs=45.6
Q ss_pred CCCCCcccccCcccCc--CceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCC
Q 046850 279 NIPDEFRCPISLDLMR--DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALI 334 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~--dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~ 334 (686)
....-|.||||++-+. -||.+.|||.||+.||...++. ...||+|++.+..+.+.
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence 3345699999999885 4667899999999999999997 77899999988766554
No 57
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.43 E-value=1e-07 Score=69.33 Aligned_cols=40 Identities=30% Similarity=0.823 Sum_probs=33.9
Q ss_pred ccccCcccCc---CceEccCcccccHHhHHHHHhhCCCCCCCCC
Q 046850 285 RCPISLDLMR---DPVIVASGHTYDRNSIAQWINSGHHTCPKSG 325 (686)
Q Consensus 285 ~Cpic~~~m~---dPv~~~cght~cr~ci~~w~~~~~~~CP~c~ 325 (686)
.||||++.+. .++.++|||.|+..||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999883 4556799999999999999998 67999995
No 58
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.43 E-value=1.5e-06 Score=76.96 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=112.8
Q ss_pred CHHHHHH-hhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHh
Q 046850 437 AIPFLVT-LLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMI 515 (686)
Q Consensus 437 ~i~~Lv~-lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 515 (686)
.+..||. +-...+.+.++..+.-|.|++.+.-|-..+.+.++++.++..|..+ +....+.+++.|+|+|.+..++..|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHHH
Confidence 3445554 4445789999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHH
Q 046850 516 GGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIE 568 (686)
Q Consensus 516 ~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~ 568 (686)
.+ .+++|.++..+.++.......|+.++..|+.... .+..+..-.++..+.+
T Consensus 96 ~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 96 RE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 99 9999999999999988999999999999998876 6666666544444433
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5e-05 Score=76.59 Aligned_cols=273 Identities=18% Similarity=0.141 Sum_probs=187.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
...+++.|.+.++.++..|+..+..++.. ..+..... .-.++.+..++...++ .+.|+++|.|++.+..-++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34678899999999999999999888764 33433332 3467888899987666 6889999999999888888888
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc-C-----CCcHHHHHHhcccCCh--HHHHHHHHHHHH
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG-R-----PRAIPALVGLLREGTT--AGKKDAATALFN 546 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~-----~g~i~~Lv~lL~~~~~--~~~~~Al~aL~n 546 (686)
.. .+..++..+-++ ....-..++.+|.||+..++....+.. . .|.+.........+-. .-...-+..+.|
T Consensus 81 ~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 77 888888888877 556677788999999998864443321 1 2333333333333322 334457778889
Q ss_pred hcCCCCcHHHHHHcCcHHH-HHHHhcCCCchhH-HHHHHHHHHHhCChhcHHHHHhCCC-ChHHH---------------
Q 046850 547 LAVYNANKASVVVAGAVPL-LIELLMDDKAGIT-DDALAVLALLLGCREGLEEIRKCRV-LVPLL--------------- 608 (686)
Q Consensus 547 Ls~~~~~~~~iv~~G~v~~-Ll~lL~~~~~~v~-~~al~~L~nLa~~~~~~~~i~~~~~-~i~~L--------------- 608 (686)
|+.....|..+.....++. .+.-+++.+..++ .-.+++|.|.|-.......+++.+. .+|.|
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 9999988888877653321 2222344333333 3357888888875555555544221 02222
Q ss_pred ------HHHHhc-----CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Q 046850 609 ------IDLLRF-----GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNR 676 (686)
Q Consensus 609 ------v~lL~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~ 676 (686)
.+++.. .++.++..-+.+|..||.. ...++.+.. .|+.|.+-++=... ++..++....+.+++.+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 233321 4677899999999999987 678888887 88888888877666 67788888888888766
Q ss_pred c
Q 046850 677 C 677 (686)
Q Consensus 677 ~ 677 (686)
-
T Consensus 316 ~ 316 (353)
T KOG2973|consen 316 L 316 (353)
T ss_pred c
Confidence 3
No 60
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.41 E-value=1.3e-05 Score=91.19 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=144.5
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHH
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
.+..++.+.+.+.++++.+|+.|+.++..+.+.+++.- ... .++.+..+|.+.|+.++..|+.++..+ ....+.
T Consensus 112 ~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~ 185 (526)
T PF01602_consen 112 AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDS 185 (526)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHH
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHH--ccCcch
Confidence 34455566666666677777777777766666444321 112 466666777666677777777766666 111111
Q ss_pred HH-HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 472 LI-MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 472 ~i-~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.. .-...+..|..++... ++-.+..++.+|..++..+.....- ...++.+..++.+.++.+...|+.++..+...
T Consensus 186 ~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 186 YKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp HTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 11 1112333333334444 6666666666666665554333211 34677777777766667777777777766655
Q ss_pred CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHh-cCChHHHHHHHHHHHH
Q 046850 551 NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLR-FGSAKGKENSITLLLG 629 (686)
Q Consensus 551 ~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~-~~s~~~ke~A~~~L~~ 629 (686)
+. .-..++++|.++|.+++..++..++..|..++... ... +. . ....+..+. +.++.+|..++.+|..
T Consensus 262 ~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~-v~--~-~~~~~~~l~~~~d~~Ir~~~l~lL~~ 330 (526)
T PF01602_consen 262 PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPA-VF--N-QSLILFFLLYDDDPSIRKKALDLLYK 330 (526)
T ss_dssp HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHH-HG--T-HHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chh-hh--h-hhhhhheecCCCChhHHHHHHHHHhh
Confidence 43 34456777777777777777777777777777633 222 22 2 233344444 5677778888888777
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHHHhc
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTT-DGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~~l~~~ 677 (686)
++.. ... .. +++.|...+. ..++..++.+...+..+...
T Consensus 331 l~~~--~n~-~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 331 LANE--SNV-KE------ILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp H--H--HHH-HH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred cccc--cch-hh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 7754 222 22 2556666663 33666776666655555443
No 61
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.39 E-value=2.5e-05 Score=88.92 Aligned_cols=253 Identities=22% Similarity=0.207 Sum_probs=151.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
.++.+...|.+.++.++..|+..+..+ +.++.... -.-...+..|..++...++-.+..++.+|..+ ........-
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~--~~~~~~~~~ 228 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRY--APMEPEDAD 228 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTS--TSSSHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhc--ccCChhhhh
Confidence 477777777777788888888777777 32222111 11123344444455667787777777777754 222222222
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
....++.+..++++. +..+...++.++..+..... .+ ..+++.|+.++.+.++.++..++.+|..++...
T Consensus 229 ~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~---~~---~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--- 298 (526)
T PF01602_consen 229 KNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE---LL---QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--- 298 (526)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH---HH---HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---
T ss_pred HHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH---HH---HhhHHHHHHHhhcccchhehhHHHHHHHhhccc---
Confidence 246777778888766 77777888888877766544 22 447788888888777778888888888887765
Q ss_pred HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHH-hcCChHHHHHHHHHHHHhhcc
Q 046850 555 ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLL-RFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL-~~~s~~~ke~A~~~L~~L~~~ 633 (686)
...+. ..-..+..+..+.+..++..++.+|..++. +.+... . ++.|..++ +..++..+..++..+..++..
T Consensus 299 ~~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~-~~n~~~-----I-l~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 299 PPAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN-ESNVKE-----I-LDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp HHHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH---HHHHHH-----H-HHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred chhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc-ccchhh-----H-HHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 33333 222223333346777788888888888876 233222 2 56777777 334677888888887777754
Q ss_pred ChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHH-HHHHHHHHHh
Q 046850 634 GGEEVARRLLINPRSIPSLQSLTTDGSLKARRK-ADALLRLLNR 676 (686)
Q Consensus 634 ~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~-A~~lL~~l~~ 676 (686)
.+... . -.++.++.++..+++..... ...+..++.+
T Consensus 371 ~~~~~-~------~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 371 FPPDA-E------WYVDTLLKLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp HGSSH-H------HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred cCchH-H------HHHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence 31111 1 13777888887665554433 3445555544
No 62
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.38 E-value=3.8e-05 Score=83.16 Aligned_cols=225 Identities=15% Similarity=0.127 Sum_probs=167.2
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHh-----CCHHHHHHhhcCCCHHHHHHHHHHhhcccccc
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEA-----GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD 467 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~-----g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~ 467 (686)
.++..+++.|+ .+..++....+..+..+...++..-..+.+. .....++.+|..+|.-++..|..+|..|....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 56778888887 4567778888888888888766555566654 45667788999899999999999998886543
Q ss_pred ccH-HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC--hHHHHHHHHHH
Q 046850 468 NNK-ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT--TAGKKDAATAL 544 (686)
Q Consensus 468 ~~k-~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~Al~aL 544 (686)
... ......-.++-+...|+++.+...+..++..|.+|...+++|..+.. .++++.|+++|+... ......++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 221 11111113445566666654577888899999999999999998888 779999999997643 48899999999
Q ss_pred HHhcCCCCcHHHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhCChh-------cHHHHHhCCCChHHHHHHHhc--
Q 046850 545 FNLAVYNANKASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLGCRE-------GLEEIRKCRVLVPLLIDLLRF-- 614 (686)
Q Consensus 545 ~nLs~~~~~~~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~~~~-------~~~~i~~~~~~i~~Lv~lL~~-- 614 (686)
+-|+.+++....+...+.++.|++++.. ....+.+-++.+|.||...+. ....+++.|. +.++..|..
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l--~~~l~~L~~rk 289 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV--LKTLQSLEQRK 289 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh--HHHHHHHhcCC
Confidence 9999998877777788999999999964 567888999999999987431 2334565554 666666654
Q ss_pred -CChHHHH
Q 046850 615 -GSAKGKE 621 (686)
Q Consensus 615 -~s~~~ke 621 (686)
.++++.+
T Consensus 290 ~~DedL~e 297 (429)
T cd00256 290 YDDEDLTD 297 (429)
T ss_pred CCcHHHHH
Confidence 4555444
No 63
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.38 E-value=3.3e-07 Score=66.59 Aligned_cols=43 Identities=40% Similarity=0.951 Sum_probs=38.4
Q ss_pred ccccCcccCcCceEcc-CcccccHHhHHHHHhhCCCCCCCCCcc
Q 046850 285 RCPISLDLMRDPVIVA-SGHTYDRNSIAQWINSGHHTCPKSGQR 327 (686)
Q Consensus 285 ~Cpic~~~m~dPv~~~-cght~cr~ci~~w~~~~~~~CP~c~~~ 327 (686)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 999999999999999878889999864
No 64
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.35 E-value=1.8e-07 Score=71.54 Aligned_cols=44 Identities=39% Similarity=0.880 Sum_probs=31.7
Q ss_pred CCcccccCcccCcCceEc-cCcccccHHhHHHHHhh-CCCCCCCCC
Q 046850 282 DEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINS-GHHTCPKSG 325 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~-~~~~CP~c~ 325 (686)
-.+.|||++..|.+||.- .|||+|++.+|.+|+.. +...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 368999999999999975 99999999999999943 567899855
No 65
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.1e-05 Score=91.47 Aligned_cols=259 Identities=19% Similarity=0.146 Sum_probs=172.8
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~ 472 (686)
...+.+-.+|.|.++..+..|+.+|..++.+..+.-.... ..+++.+++.|+++++.+|-.|+.+++.+|.+=.. -.+
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 3456666788899999999999999999987655444322 35788888999999999999999999999987433 444
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHH-HHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIP-ALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~-~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
-...-.++.|+..+.+..+..++.+|+.+|.|++...........-.+.+. .|..++.++++.+++.++.+|...+...
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 455567888999999876889999999999999876543333222133444 3333556788899999999999998765
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCC-chhHHHHHHHHHHHhC--ChhcHHHHHhCC-CChHHHHHH---HhcCChHHHHHHH
Q 046850 552 ANKASVVVAGAVPLLIELLMDDK-AGITDDALAVLALLLG--CREGLEEIRKCR-VLVPLLIDL---LRFGSAKGKENSI 624 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~-~~v~~~al~~L~nLa~--~~~~~~~i~~~~-~~i~~Lv~l---L~~~s~~~ke~A~ 624 (686)
...-.=.-...+|.|.+.|...+ .+.++....++..++. ..-|++.+.... -++..+..+ ....+...+++..
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~ 586 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI 586 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence 54333333457888888885543 4444444444444432 244554443321 112333333 1124556788888
Q ss_pred HHHHHhhccChHHHHHHHHcCCCChHHHHHHH
Q 046850 625 TLLLGLCKDGGEEVARRLLINPRSIPSLQSLT 656 (686)
Q Consensus 625 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 656 (686)
....+||..-+++....+-. ++|+|+.-.
T Consensus 587 ~~warmc~ilg~~F~p~L~~---Vmppl~~ta 615 (1075)
T KOG2171|consen 587 AFWARMCRILGDDFAPFLPV---VMPPLLKTA 615 (1075)
T ss_pred HHHHHHHHHhchhhHhHHHH---HhHHHHHhh
Confidence 88888998766665444422 466665543
No 66
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.6e-07 Score=95.17 Aligned_cols=70 Identities=20% Similarity=0.404 Sum_probs=61.3
Q ss_pred CCCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccC-CCCCCcHHHHHHHHHHH
Q 046850 278 PNIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIH-MALIPNYTLKSLLHQWC 347 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~ 347 (686)
..+..+|.||||+.+++..+++ .|+|.||+.||.+-++.|+..||.|++.+.. ..|+++...-.+|.+.-
T Consensus 38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 3567789999999999999887 8999999999999999999999999999754 47888888888887763
No 67
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5.6e-07 Score=95.37 Aligned_cols=71 Identities=28% Similarity=0.535 Sum_probs=61.1
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCC
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNV 352 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 352 (686)
...+++.||||++.+.+|++++|||+||+.|+..++. +...||.|+. .. ..+.+|..+.++++.+...+..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcCCc
Confidence 4567899999999999998889999999999999998 6789999996 32 2777999999999998776543
No 68
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.26 E-value=8.7e-07 Score=62.04 Aligned_cols=39 Identities=46% Similarity=1.108 Sum_probs=36.0
Q ss_pred cccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCC
Q 046850 286 CPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKS 324 (686)
Q Consensus 286 Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c 324 (686)
|+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667889986
No 69
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00019 Score=83.86 Aligned_cols=273 Identities=17% Similarity=0.185 Sum_probs=168.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhh----cCCCHHHHHHHHHHhhcccccccc-
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLL----SSHDPRIQENAVTALLNLSIFDNN- 469 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL----~s~~~~~~~~A~~aL~nLs~~~~~- 469 (686)
.+.+.+.+..++..++..|++++...+...+.++...-. ...+|.++..+ ..+|.+....++.+|..|.....-
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 344455566555559999999999888766545544443 34577666555 446676667777777776654332
Q ss_pred -HHHHHhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhhhH---------------------------------
Q 046850 470 -KILIMAAGAIDSIIEVLQSGK-TMEARENAAATIFSLSMIDDCKVM--------------------------------- 514 (686)
Q Consensus 470 -k~~i~~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~~~~~--------------------------------- 514 (686)
+..+. .++...+.+.++.. +..+|..|...|..++.+-....+
T Consensus 241 l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 241 LRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 22111 13333344444332 455666666666665544110000
Q ss_pred ---------------------hhcCCCcH----HHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHH
Q 046850 515 ---------------------IGGRPRAI----PALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIEL 569 (686)
Q Consensus 515 ---------------------i~~~~g~i----~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~l 569 (686)
++. .-++ +.+-.++.+.+..-+..|+.||..++.+....-.-.=..+++.++..
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g-~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGG-KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNG 397 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCCh-hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhh
Confidence 000 1122 33334455667777777888877776654321111112467777788
Q ss_pred hcCCCchhHHHHHHHHHHHhCC--hhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 046850 570 LMDDKAGITDDALAVLALLLGC--REGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLINP 646 (686)
Q Consensus 570 L~~~~~~v~~~al~~L~nLa~~--~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~ 646 (686)
|.++++.++-.|+.+++.++.+ ++-.+. ...-. +|.|+..+.+ ++++++.+|+.+|.|+............. .
T Consensus 398 l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l-~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d 473 (1075)
T KOG2171|consen 398 LNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERL-PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--D 473 (1075)
T ss_pred cCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhc-cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--H
Confidence 8999999999999999999873 222222 22233 6788888877 78899999999999998776554444433 3
Q ss_pred CChH-HHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 647 RSIP-SLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 647 g~i~-~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
+++. .|..+.+++++.+++.+...|.-.-
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 4566 7777888999999999888776543
No 70
>PHA02926 zinc finger-like protein; Provisional
Probab=98.21 E-value=8.9e-07 Score=84.64 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=40.1
Q ss_pred CCCCcccccCcccCcC---------ceEccCcccccHHhHHHHHhhC-----CCCCCCCCcccc
Q 046850 280 IPDEFRCPISLDLMRD---------PVIVASGHTYDRNSIAQWINSG-----HHTCPKSGQRLI 329 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~d---------Pv~~~cght~cr~ci~~w~~~~-----~~~CP~c~~~l~ 329 (686)
..++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3457899999997643 3556999999999999999852 356999998865
No 71
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=1.7e-06 Score=88.24 Aligned_cols=62 Identities=24% Similarity=0.447 Sum_probs=46.3
Q ss_pred CCcccccCccc-CcCce---Ec-cCcccccHHhHHHHHhhCCCCCCCCCccccCCC----CCCcHHHHHHH
Q 046850 282 DEFRCPISLDL-MRDPV---IV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA----LIPNYTLKSLL 343 (686)
Q Consensus 282 ~~~~Cpic~~~-m~dPv---~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~----l~~n~~l~~~i 343 (686)
++..||+|+.- ...|- .+ .|||.||.+|+..+|..+...||.|+..+.... ..++..+.+-|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV 72 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV 72 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence 45689999972 33442 22 699999999999999888889999999987766 44555554444
No 72
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.8e-05 Score=85.63 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=49.3
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCC
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIP 335 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~ 335 (686)
..-++||.|..-.+|.|++.|||.||..||++.+....+.||.|+..+...++.+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 4567999999999999999999999999999999998999999999987666544
No 73
>PTZ00429 beta-adaptin; Provisional
Probab=98.10 E-value=0.00093 Score=77.88 Aligned_cols=258 Identities=14% Similarity=0.078 Sum_probs=175.4
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
....+++.+.+.+.+.++-.--.|.+.+..+++.-.. ++..+.+=+.++|+-++-.|+++|.++-. ..++
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~ 138 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVL 138 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHH
Confidence 4556677788888888887777777777755543221 46778888888999999999999999854 2233
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
+. .++++.+.+.+. ++-+|..|+-++..+-..+. ..+.. .|.++.|.++|.+.++.++.+|+.+|..+....+..
T Consensus 139 e~-l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p--elv~~-~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 139 EY-TLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM--QLFYQ-QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HH-HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc--ccccc-cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 32 567778888888 99999999999999865433 23333 788999999999999999999999999998765543
Q ss_pred HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 046850 555 ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 634 (686)
- -...+.+..|+..|.+-+.-.+-..+.+|... .|...... ... +..+...|++.++.+.-.|+.+++++....
T Consensus 214 l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~i-l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~ 287 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETL-LTRVLPRMSHQNPAVVMGAIKVVANLASRC 287 (746)
T ss_pred h-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCcC
Confidence 2 23455567777777655544454444544332 12222211 122 667777888888999999999999988654
Q ss_pred hHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 635 GEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 635 ~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
++.....+.. .+.++|+.|+ ++++.+|--+..-+..+..
T Consensus 288 ~~~~~~~~~~--rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 288 SQELIERCTV--RVNTALLTLS-RRDAETQYIVCKNIHALLV 326 (746)
T ss_pred CHHHHHHHHH--HHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence 3343333322 1235666664 5566777666655555443
No 74
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=6.8e-05 Score=82.26 Aligned_cols=272 Identities=15% Similarity=0.125 Sum_probs=182.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHH----hCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAE----AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~----~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
..++.|.+.|.+.+...+..|..+|..++.++.+.-..=+. .-.+|.++.+.+++++.++.+|+..+..+-.. .+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-QT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-Cc
Confidence 36899999999999899999999999999866543222111 12589999999999999999999988776543 23
Q ss_pred HHHHHhc-CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 470 KILIMAA-GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 470 k~~i~~~-g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
+..+..- ..++.+..+-.+. ++++|.+.+.+|..|......+-.=-- .++++.++..-++.+..+...|+.....++
T Consensus 207 qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 3444433 3556666666556 999999999999999765433221111 568888888888888899999999999999
Q ss_pred CCCCcHHHHHH--cCcHHHHHHHh----------cC-CC-----------------------------------------
Q 046850 549 VYNANKASVVV--AGAVPLLIELL----------MD-DK----------------------------------------- 574 (686)
Q Consensus 549 ~~~~~~~~iv~--~G~v~~Ll~lL----------~~-~~----------------------------------------- 574 (686)
..+--+..+.. ...+|.|+.-+ .+ .+
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 98854444433 24566665532 10 00
Q ss_pred ----chhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc----CChHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 046850 575 ----AGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF----GSAKGKENSITLLLGLCKDGGEEVARRLLINP 646 (686)
Q Consensus 575 ----~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~ 646 (686)
-.++...+++|.-|+. +..... ++.+..+|+. ..=.+||.++-+|..++.+...-....+-
T Consensus 365 ~~~dWNLRkCSAAaLDVLan-------vf~~el-L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--- 433 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLAN-------VFGDEL-LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--- 433 (885)
T ss_pred ccccccHhhccHHHHHHHHH-------hhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH---
Confidence 0112222222222221 122222 4555555543 33458899999999998764333333332
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHHhccc
Q 046850 647 RSIPSLQSLTTDGSLKARRKADALLRLLNRCCS 679 (686)
Q Consensus 647 g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~ 679 (686)
.++|.|+.++.+..+-+|...+|.|.....|-.
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV 466 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence 268999999999999999999999998877643
No 75
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.07 E-value=0.00017 Score=79.55 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=138.4
Q ss_pred hhcCCHHHHHHHHHHHHHHHhh----CchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcC
Q 046850 403 LAMGSPEIQSQAAYELRLLAKT----GMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAG 477 (686)
Q Consensus 403 L~s~~~~~q~~al~~L~~La~~----~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g 477 (686)
+.++.++.+.-++......... ...+|..+.+.-....+.......|......|+-.+.+++..-.. +.-.-...
T Consensus 340 l~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~d 419 (678)
T KOG1293|consen 340 LAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRND 419 (678)
T ss_pred HhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccch
Confidence 3445555554444443322221 112334444333333333344456788888888888888754333 44444567
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHH
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSM-IDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKAS 556 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~ 556 (686)
++.++++++..| +..+...+.++|.||.. ....+..+.+ .|+|..+.+++.+.++..+..++|+|+++..+.++..+
T Consensus 420 v~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 420 VAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred hHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 999999999988 88999999999999975 4478889988 99999999999999999999999999999998875444
Q ss_pred HH-HcCc-HHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCC
Q 046850 557 VV-VAGA-VPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCR 602 (686)
Q Consensus 557 iv-~~G~-v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~ 602 (686)
.. .+.+ ...++.+..+++..+++.|+.+|.||.. ..+....+++.-
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 32 2333 3446666688999999999999999954 455556555543
No 76
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.05 E-value=3.1e-06 Score=61.44 Aligned_cols=41 Identities=20% Similarity=0.511 Sum_probs=34.9
Q ss_pred ccccCcccC---cCceEccCcccccHHhHHHHHhhCCCCCCCCCc
Q 046850 285 RCPISLDLM---RDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQ 326 (686)
Q Consensus 285 ~Cpic~~~m---~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~ 326 (686)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999888 357788999999999999998 44789999974
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=98.05 E-value=0.00011 Score=83.10 Aligned_cols=191 Identities=20% Similarity=0.198 Sum_probs=139.9
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch----hhhHhhcCCCcHHHHHHhcccCC-------hHHHHHHHHHHHH
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDD----CKVMIGGRPRAIPALVGLLREGT-------TAGKKDAATALFN 546 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~-------~~~~~~Al~aL~n 546 (686)
.++..+.+|+.. +++-|-.+...+..+...++ .+..+.+ .=+.+.|-.+|+++. ...+.-|+..|..
T Consensus 6 ~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467788999998 78889999999999988764 2334666 445788888988732 3567779999999
Q ss_pred hcCCCCc--HHHHHHcCcHHHHHHHhcCCCc-hhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHH
Q 046850 547 LAVYNAN--KASVVVAGAVPLLIELLMDDKA-GITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENS 623 (686)
Q Consensus 547 Ls~~~~~--~~~iv~~G~v~~Ll~lL~~~~~-~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A 623 (686)
+|..++. ...++ +-||.|++.+...+. .+...|+.+|..++.+++|++++++.|+ ++.|++++.+ .+...+.|
T Consensus 84 f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~-v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 84 FCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGA-VPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred HcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCC-HHHHHHHHHh-CcchHHHH
Confidence 9997763 34444 459999999977666 9999999999999999999999999999 9999999886 77789999
Q ss_pred HHHHHHhhccChHHHHHHHHcC-CCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 624 ITLLLGLCKDGGEEVARRLLIN-PRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 624 ~~~L~~L~~~~~~~~~~~l~~~-~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
..+|.+++...+......-... ..+++.+-..........|-.+..+|..+
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 9999999987653222110000 12344455555544444454444444443
No 78
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.04 E-value=0.00062 Score=71.69 Aligned_cols=275 Identities=16% Similarity=0.071 Sum_probs=192.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhC-CHHHHHHhhcC-CCHHHHHHHHHHhhccccccccHHHH
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAG-AIPFLVTLLSS-HDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g-~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
-...+..|..++.-.+..+.+.|..++......-.. .+-. ....|-..+++ .+++....|+.+|--+...++.|..+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 345678888888888888899998888744322211 0100 12234445554 77888888999999999999999999
Q ss_pred HhcCcHHHHHHHH-cCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-hHHHHHHHHHHHHhcCCC
Q 046850 474 MAAGAIDSIIEVL-QSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-TAGKKDAATALFNLAVYN 551 (686)
Q Consensus 474 ~~~g~l~~Lv~lL-~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~ 551 (686)
+.++++..++..+ ++..+...+....-.++-|+.++...+.+.. .+.|+.|.+++++.. ..+.+-.+.++.|+....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999 4434789999999999999999988888865 899999999998764 578888999999999877
Q ss_pred C-------cHHHHHHcCcHHHHHHHhcC--CCchhHHHHHHHHH-------HHhCChhcHHH------------------
Q 046850 552 A-------NKASVVVAGAVPLLIELLMD--DKAGITDDALAVLA-------LLLGCREGLEE------------------ 597 (686)
Q Consensus 552 ~-------~~~~iv~~G~v~~Ll~lL~~--~~~~v~~~al~~L~-------nLa~~~~~~~~------------------ 597 (686)
+ ....|+..++.+.+-.+... .+.++.+..-.+-. .|++.++...+
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW 353 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW 353 (442)
T ss_pred chhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchH
Confidence 4 23455555655555444332 24444443322222 23332222222
Q ss_pred ------HHhCC-CChHHHHHHHhcCC-hHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHH
Q 046850 598 ------IRKCR-VLVPLLIDLLRFGS-AKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADA 669 (686)
Q Consensus 598 ------i~~~~-~~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~ 669 (686)
+-+.+ ..+..|+.+|+..+ |..---|+.=+....++- ++....+.+ .|+=..+++|+...++++|-.|..
T Consensus 354 ~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y-P~gk~vv~k-~ggKe~vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 354 RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY-PEGKAVVEK-YGGKERVMNLLNHEDPEVRYHALL 431 (442)
T ss_pred HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC-chHhHHHHH-hchHHHHHHHhcCCCchHHHHHHH
Confidence 11111 13677888888754 555555666667777765 566666666 899999999999999999999988
Q ss_pred HHHHH
Q 046850 670 LLRLL 674 (686)
Q Consensus 670 lL~~l 674 (686)
+++.+
T Consensus 432 avQ~l 436 (442)
T KOG2759|consen 432 AVQKL 436 (442)
T ss_pred HHHHH
Confidence 77665
No 79
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.6e-06 Score=91.07 Aligned_cols=70 Identities=27% Similarity=0.447 Sum_probs=56.6
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhh----CCCCCCCCCccccCCCCCCc----HHHHHHHHHHHHhCCC
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS----GHHTCPKSGQRLIHMALIPN----YTLKSLLHQWCQDNNV 352 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~----~~~~CP~c~~~l~~~~l~~n----~~l~~~i~~~~~~~~~ 352 (686)
+..||||++...-|+.+.|||.||..||.++|.. +...||.|+..+....+.|- ..-+.-+..++..||+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 8899999999999999999999999999999986 35789999998876554433 3344457777888884
No 80
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.9e-06 Score=83.30 Aligned_cols=50 Identities=16% Similarity=0.412 Sum_probs=44.6
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHH-HHhhCCCCCCCCCcccc
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQ-WINSGHHTCPKSGQRLI 329 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~-w~~~~~~~CP~c~~~l~ 329 (686)
+..+|.|+||++.+.+|+.++|||.||..||-. |-......||.||....
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 367999999999999999999999999999999 88875667999998753
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=98.00 E-value=0.00024 Score=80.33 Aligned_cols=234 Identities=17% Similarity=0.141 Sum_probs=163.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccccc----HHHHHhcCcHHHHHHHHcCCC------CHHHHHHHHHHHHHhc
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN----KILIMAAGAIDSIIEVLQSGK------TMEARENAAATIFSLS 506 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~----k~~i~~~g~l~~Lv~lL~~~~------~~e~~~~aa~~L~~Ls 506 (686)
.+...+.+|++.+.+-+-.++..+.++..+.+. +..+.++=+.+-+-.+|+++. ....+..|+++|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 355677888888866666777777777766442 456788866888888998832 4678899999999999
Q ss_pred cCchhh--hHhhcCCCcHHHHHHhcccCCh-HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHH
Q 046850 507 MIDDCK--VMIGGRPRAIPALVGLLREGTT-AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALA 583 (686)
Q Consensus 507 ~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~-~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~ 583 (686)
..++.. ..+ .+.||.|++.+...+. .+..+|+.+|..++.+++++..+++.|+++.|.+.+.+ .+...+.|+.
T Consensus 86 ~~~~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred CChhhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 977654 344 3479999999988877 99999999999999999999999999999999999977 5677899999
Q ss_pred HHHHHhCChhcHHHHHhCC----CChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCC----CChHHHHHH
Q 046850 584 VLALLLGCREGLEEIRKCR----VLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINP----RSIPSLQSL 655 (686)
Q Consensus 584 ~L~nLa~~~~~~~~i~~~~----~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~----g~i~~L~~L 655 (686)
++.+++.... ...+-+.. ..++.|...+.......+-.++..|..+-...+.. ......+. .+...+..+
T Consensus 162 lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~-~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 162 LLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPIL-PLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcc-ccccCChhhhHHHHHHHHHHH
Confidence 9999976322 11111111 11455555555555566777788888877665211 00001111 245566677
Q ss_pred HhcC-CHHHHHHHHHHHHHHHh
Q 046850 656 TTDG-SLKARRKADALLRLLNR 676 (686)
Q Consensus 656 l~~~-~~~~k~~A~~lL~~l~~ 676 (686)
+++. ++..|..|..+...|-+
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 7777 66666665554444433
No 82
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.99 E-value=0.00035 Score=73.47 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=172.9
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccccccHHH
Q 046850 396 AEFLVGKLAM-GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS--HDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 396 i~~Lv~~L~s-~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
..+|...+++ .+.+...-|+++|..+.. -++.|..++.++++..++..+.+ .+..+|-+.+-+++-|+.++...+.
T Consensus 158 ~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~ 236 (442)
T KOG2759|consen 158 KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEK 236 (442)
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHH
Confidence 3455556665 566777788999999998 68999999999999999998843 5788999999999999998888877
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-------hhhhHhhcCCCcHHHHHHhcccC---ChHHHHHHH-
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-------DCKVMIGGRPRAIPALVGLLREG---TTAGKKDAA- 541 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-------~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~Al- 541 (686)
+...+.|+.|.+++++...+.+...+++++.|+.... +....+. .+-++.-++.|... ++++..+.-
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~ 314 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEF 314 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHH
Confidence 7677999999999998877888899999999997665 2223333 34555556666542 233322211
Q ss_pred ------HHHHHhcCC------------------------CCcHHHHHHc--CcHHHHHHHhcC-CCchhHHHHHHHHHHH
Q 046850 542 ------TALFNLAVY------------------------NANKASVVVA--GAVPLLIELLMD-DKAGITDDALAVLALL 588 (686)
Q Consensus 542 ------~aL~nLs~~------------------------~~~~~~iv~~--G~v~~Ll~lL~~-~~~~v~~~al~~L~nL 588 (686)
.-...|++. .+|..++-+. .++..|+++|.. .++.+...|+-=++..
T Consensus 315 L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~ 394 (442)
T KOG2759|consen 315 LTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEY 394 (442)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHH
Confidence 112223322 1234445443 458889999954 4577777777777777
Q ss_pred hC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 589 LG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 589 a~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
.+ +|+|+..+.+.|+ =..+++++.+.+++++-+|+.++-.|..+
T Consensus 395 Vr~yP~gk~vv~k~gg-Ke~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 395 VRHYPEGKAVVEKYGG-KERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhCchHhHHHHHhch-HHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 65 8999999999999 89999999999999999999988766543
No 83
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.96 E-value=4.1e-06 Score=84.85 Aligned_cols=67 Identities=13% Similarity=0.371 Sum_probs=56.5
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccC----CCCCCcHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIH----MALIPNYTLKSLLHQW 346 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~----~~l~~n~~l~~~i~~~ 346 (686)
++-....|++|..+|.|+-++ .|=||||++||-+++.. ..+||.|...+-. ..+.++.+|+.++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 455678999999999999977 89999999999999998 8999999877643 3467788888888665
No 84
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00023 Score=79.73 Aligned_cols=215 Identities=21% Similarity=0.209 Sum_probs=165.7
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCch----
Q 046850 437 AIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGK-TMEARENAAATIFSLSMIDD---- 510 (686)
Q Consensus 437 ~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~---- 510 (686)
-|+.|+.-+. +.-.+-+..|+..|..+|. ..|..+... ++++|+++|.+.. +++....+..++.++...++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 4666666553 3556778999999999875 456655555 6999999999765 88999999999999987663
Q ss_pred ---hh----------hHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--cHHHHHHc-CcHHHHHHHhcCCC
Q 046850 511 ---CK----------VMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA--NKASVVVA-GAVPLLIELLMDDK 574 (686)
Q Consensus 511 ---~~----------~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--~~~~iv~~-G~v~~Ll~lL~~~~ 574 (686)
.+ +.+....+.|..|+..+...+-.++..|+..|.+|-.+.+ .+..+... -+|..|+.+|.+..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 11 2233447889999999999999999999999999988766 45555544 67999999999988
Q ss_pred chhHHHHHHHHHHHhCChhcHHHHHhC-CCChHHHHHHHhc-C---ChHHHHHHHHHHHHhhccChHHHHHHHHcCCCCh
Q 046850 575 AGITDDALAVLALLLGCREGLEEIRKC-RVLVPLLIDLLRF-G---SAKGKENSITLLLGLCKDGGEEVARRLLINPRSI 649 (686)
Q Consensus 575 ~~v~~~al~~L~nLa~~~~~~~~i~~~-~~~i~~Lv~lL~~-~---s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i 649 (686)
..++..++-.|..|.......+.++.. ++ ...|..+++. | ..-+-+-|+.+|.||-.++.. -+.++.+.+-+
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENa-FerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S--NQ~~FrE~~~i 256 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENA-FERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS--NQNFFREGSYI 256 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHH-HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc--hhhHHhccccH
Confidence 899999999999999876666666554 45 7899999976 2 234789999999999987533 34555547789
Q ss_pred HHHHHHHh
Q 046850 650 PSLQSLTT 657 (686)
Q Consensus 650 ~~L~~Ll~ 657 (686)
|.|..++.
T Consensus 257 ~rL~klL~ 264 (970)
T KOG0946|consen 257 PRLLKLLS 264 (970)
T ss_pred HHHHhhcC
Confidence 99886653
No 85
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0012 Score=66.87 Aligned_cols=233 Identities=17% Similarity=0.147 Sum_probs=164.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.+.++++...+ -..|+.+|.+++. +.+.|..+.+. ++..++.++..+........+.+|.||+.++.....+
T Consensus 44 ~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 44 ALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 467777777776555 5578899999998 67778877777 8888889888887778888999999999988763333
Q ss_pred H---h----cCcHHHHHHHHcCCCCHH-HHHHHHHHHHHhccCchhhhHhhcCCCcHH-HHHHhcccCChHH-HHHHHHH
Q 046850 474 M---A----AGAIDSIIEVLQSGKTME-ARENAAATIFSLSMIDDCKVMIGGRPRAIP-ALVGLLREGTTAG-KKDAATA 543 (686)
Q Consensus 474 ~---~----~g~l~~Lv~lL~~~~~~e-~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~-~Lv~lL~~~~~~~-~~~Al~a 543 (686)
. . .|.+.....+.+.+.+.. --...+-++.||+.....|..+.. ...+| .-+.-+.+.+..+ +...+++
T Consensus 120 l~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~-~k~~p~~kll~ft~~~s~vRr~Gvagt 198 (353)
T KOG2973|consen 120 LTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLE-PKRFPDQKLLPFTSEDSQVRRGGVAGT 198 (353)
T ss_pred HHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcc-hhhhhHhhhhcccccchhhhccchHHH
Confidence 3 2 466677777777665422 245677888999999988888776 33222 2222233434444 4458899
Q ss_pred HHHhcCCCCcHHHHHHcC--cHHHHHH---------------------Hhc-----CCCchhHHHHHHHHHHHhCChhcH
Q 046850 544 LFNLAVYNANKASVVVAG--AVPLLIE---------------------LLM-----DDKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 544 L~nLs~~~~~~~~iv~~G--~v~~Ll~---------------------lL~-----~~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
|.|.|....+...++..+ ++|.++- +|. ++++.++..-+.+|..||.+..||
T Consensus 199 lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR 278 (353)
T KOG2973|consen 199 LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR 278 (353)
T ss_pred HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH
Confidence 999999988887777643 3444332 331 246788888999999999999999
Q ss_pred HHHHhCCCChHHHHHHHhc--CChHHHHHHHHHHHHhhcc
Q 046850 596 EEIRKCRVLVPLLIDLLRF--GSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~ 633 (686)
+.+.+.|+ ..+++-++. .++++++.+-.+...+...
T Consensus 279 e~lR~kgv--YpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 279 EVLRSKGV--YPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred HHHHhcCc--hHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 99888887 555555554 5677777776665555553
No 86
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00059 Score=75.83 Aligned_cols=261 Identities=18% Similarity=0.205 Sum_probs=178.6
Q ss_pred HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccccc
Q 046850 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 390 ~~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~ 468 (686)
|+.+..++.|++.|..+|+.+|-.|+..+..||+.++.|--.+ -|.+.++|.+ .|.=+....+...++|+.-++
T Consensus 177 eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 177 EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc
Confidence 5567789999999999999999999999999999998877654 4788887754 455566778888888886554
Q ss_pred cHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHh--ccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHH
Q 046850 469 NKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSL--SMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALF 545 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~L--s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 545 (686)
- + -...+++|..++.+.....+...++.++..- +... ++-..+ .-+++.|-.++.+.++..+.-++-|+.
T Consensus 252 R---L-gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fiedsDqNLKYlgLlam~ 324 (877)
T KOG1059|consen 252 R---L-GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDSDQNLKYLGLLAMS 324 (877)
T ss_pred h---h-hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcCCccHHHHHHHHHH
Confidence 4 1 1236788888888764444555555554433 3222 333333 337888888888999999999999999
Q ss_pred HhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHH
Q 046850 546 NLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENS 623 (686)
Q Consensus 546 nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A 623 (686)
.+...++ ..+. --..++++|.+.+..++-.|+..|.-+.. .++-.+| +..|+..+.. .....+...
T Consensus 325 KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eI------Vk~LM~~~~~ae~t~yrdel 392 (877)
T KOG1059|consen 325 KILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEI------VKTLMKHVEKAEGTNYRDEL 392 (877)
T ss_pred HHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHH------HHHHHHHHHhccchhHHHHH
Confidence 9886554 2221 13467888999999999999998887765 2222222 3455553333 333566666
Q ss_pred HHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc-CCHHHHHHHHHHHHHHHhc
Q 046850 624 ITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD-GSLKARRKADALLRLLNRC 677 (686)
Q Consensus 624 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~~ 677 (686)
+.-+..+|+.++-..+..+-. .+..|++|.+- |+.++...|..++-+.-+.
T Consensus 393 l~~II~iCS~snY~~ItdFEW---YlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV 444 (877)
T KOG1059|consen 393 LTRIISICSQSNYQYITDFEW---YLSVLVELARLEGTRHGSLIAEQIIDVAIRV 444 (877)
T ss_pred HHHHHHHhhhhhhhhhhhHHH---HHHHHHHHHhccccchhhHHHHHHHHHheec
Confidence 777788888765555444433 36777777764 4667777777776665444
No 87
>PTZ00429 beta-adaptin; Provisional
Probab=97.88 E-value=0.0038 Score=72.87 Aligned_cols=214 Identities=17% Similarity=0.098 Sum_probs=149.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
+-+..|-+.|.+.+...+..|++.+-.....+.+... +.+.+++++.++|.+++.-+.-.|.+++.....-..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal- 104 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL- 104 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-
Confidence 3455667788888888888888866554432333332 456788899999999999998888888754332211
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCc
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~ 553 (686)
-++..+.+=+.++ ++.+|..|+.+|.++-..+ .+ .-.++.+.+.+.+.++-+++.|+.++..|-...+
T Consensus 105 ---LaINtl~KDl~d~-Np~IRaLALRtLs~Ir~~~----i~---e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 105 ---LAVNTFLQDTTNS-SPVVRALAVRTMMCIRVSS----VL---EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred ---HHHHHHHHHcCCC-CHHHHHHHHHHHHcCCcHH----HH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 1466677777887 9999999999998875431 11 1256677788889999999999999999976554
Q ss_pred HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 046850 554 KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLG 629 (686)
Q Consensus 554 ~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~ 629 (686)
..+...|.++.|.++|.+.++.++..|+.+|..+.......-. ...+. +..|+..+...++-.+-..+.+|..
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~-~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEW-VNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHH-HHHHHHHhhcCChHHHHHHHHHHHh
Confidence 2344678889999999999999999999999999763322211 12223 4455555544566666665555543
No 88
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.87 E-value=1.5e-05 Score=78.74 Aligned_cols=66 Identities=21% Similarity=0.490 Sum_probs=57.7
Q ss_pred cccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCcc-ccCCCCCCcHHHHHHHHHHHHh
Q 046850 284 FRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQR-LIHMALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 284 ~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~-l~~~~l~~n~~l~~~i~~~~~~ 349 (686)
+.||+|..++++|+-+ +|||+||..||...+-...+.||.|... +--..+.|++..+..|+.+.+.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999988 8999999999999988878999999764 3345789999888888888774
No 89
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.86 E-value=0.0028 Score=68.22 Aligned_cols=270 Identities=16% Similarity=0.168 Sum_probs=187.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccccccHHHHH
Q 046850 397 EFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH--DPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 397 ~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
+.+...+-+.+.+++..|.+.+|.+.. +...-..+.+.+.--.++.-|..+ +..=+++|+..+..+.....+... +
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence 333334445558999999999999988 667777777777655566666543 444567899888777654333222 3
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
..|++..++.+..+. ++..+..|..+|..|+..+. ..+.. .|++..|++.+.++........+.++.++...+..|
T Consensus 106 ~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 106 PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 557899999999998 88999999999999998743 33344 899999999998887778888999999999999888
Q ss_pred HHHHHcCcHHHHHHHhcCC-------Cc--hhHHHHHHHHHHHhCChhcHHHHHhCC--CChHHHHHHHhcCChHHHHHH
Q 046850 555 ASVVVAGAVPLLIELLMDD-------KA--GITDDALAVLALLLGCREGLEEIRKCR--VLVPLLIDLLRFGSAKGKENS 623 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~-------~~--~v~~~al~~L~nLa~~~~~~~~i~~~~--~~i~~Lv~lL~~~s~~~ke~A 623 (686)
..+...--+..++.-+.+. +. .....+..++..+-++-.|--.+...+ + +..|+..|+..++++++..
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~-lksLv~~L~~p~~~ir~~I 260 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRG-LKSLVDSLRLPNPEIRKAI 260 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchH-HHHHHHHHcCCCHHHHHHH
Confidence 8776654566666655432 11 233445555555544444444333332 4 7777777777777777777
Q ss_pred HHHHHHhhccCh---------------------------------------------------HHHHHHHHcCCCChHHH
Q 046850 624 ITLLLGLCKDGG---------------------------------------------------EEVARRLLINPRSIPSL 652 (686)
Q Consensus 624 ~~~L~~L~~~~~---------------------------------------------------~~~~~~l~~~~g~i~~L 652 (686)
+.++..+-.-.. .-....+++ .|+++.|
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~-~gL~~~L 339 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIE-AGLLEAL 339 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHH-cChHHHH
Confidence 666665522100 002233455 8999999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHH
Q 046850 653 QSLTTDG-SLKARRKADALLRLL 674 (686)
Q Consensus 653 ~~Ll~~~-~~~~k~~A~~lL~~l 674 (686)
++++.+. ++..++||.-+|.-+
T Consensus 340 ~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 340 VELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHhcCCCchHHHHHHHHHHHH
Confidence 9999988 888899998877644
No 90
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.84 E-value=0.00079 Score=74.41 Aligned_cols=225 Identities=15% Similarity=0.080 Sum_probs=152.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHHH
Q 046850 405 MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSII 483 (686)
Q Consensus 405 s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv 483 (686)
..+......|+-.+..++..-..-|..+....++.+|+.+|..++..++..++.+|.||...=.+ |..+++.|+|+.+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 45777788888888888875545555566678899999999999999999999999999987555 99999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcC-CCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHc-
Q 046850 484 EVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGR-PRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVA- 560 (686)
Q Consensus 484 ~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~- 560 (686)
+.+.+. +..+|.++.|+|.++..+++......-. .=.-..++.+..++++.+++.++..|.||.-+.. ....+++.
T Consensus 468 s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~ 546 (678)
T KOG1293|consen 468 SMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKF 546 (678)
T ss_pred HHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhh
Confidence 999999 8899999999999999988654443221 2234566777788899999999999999987754 55555553
Q ss_pred C-cHHHHHHHh--cCCCchhHHHHHHHHHHHh-CChh-cHHHHHhCCCChHHHHH---HHh-----cCChHHHHHHHHHH
Q 046850 561 G-AVPLLIELL--MDDKAGITDDALAVLALLL-GCRE-GLEEIRKCRVLVPLLID---LLR-----FGSAKGKENSITLL 627 (686)
Q Consensus 561 G-~v~~Ll~lL--~~~~~~v~~~al~~L~nLa-~~~~-~~~~i~~~~~~i~~Lv~---lL~-----~~s~~~ke~A~~~L 627 (686)
+ .+..+...+ ..+++ +.........++. ..+. .+.++. +- .+.++- .+. +......-++++.+
T Consensus 547 ~~~ld~i~l~lk~a~~~p-i~ie~~~~~~~l~~~~d~~~~~am~--~~-fk~lvl~~e~~~n~~q~s~~~qls~~~~~~i 622 (678)
T KOG1293|consen 547 KDVLDKIDLQLKIAIGSP-ILIEFLAKKMRLLNPLDTQQKKAME--GI-FKILVLLAEVNENKKQLSIEQQLSLNIMSEI 622 (678)
T ss_pred hHHHHHHHHHHhhccCCc-eehhhHHHHHHhccchhHHHHHHHH--HH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 2 222222222 22333 3333333333443 3222 223222 22 233322 221 12334666788888
Q ss_pred HHhhccC
Q 046850 628 LGLCKDG 634 (686)
Q Consensus 628 ~~L~~~~ 634 (686)
.++....
T Consensus 623 inl~~~~ 629 (678)
T KOG1293|consen 623 INLTTTD 629 (678)
T ss_pred HhccCCC
Confidence 8887644
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.81 E-value=2e-05 Score=56.20 Aligned_cols=40 Identities=53% Similarity=0.687 Sum_probs=37.9
Q ss_pred CchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 046850 425 GMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLS 464 (686)
Q Consensus 425 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs 464 (686)
+++++..+++.|+||.|+.+|++++.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999997
No 92
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0031 Score=72.52 Aligned_cols=261 Identities=17% Similarity=0.142 Sum_probs=176.8
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
+..+.+...|. .+++.+|.-|+..+..+.. +.+.-.-+++.|.+..|+.+|.+ -+..++-++.+|..|+.+.+--..
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKE 1848 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHH
Confidence 34455555565 4577899999999887776 67777788889988888888864 567789999999999988777777
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hhhhHhhcC-----------CCcHHHHHHhcc---------
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID--DCKVMIGGR-----------PRAIPALVGLLR--------- 530 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~-----------~g~i~~Lv~lL~--------- 530 (686)
-++.|++..+..++....+...|..++..|..|.-.. ..+..|.-. .+.-...|+++.
T Consensus 1849 A~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELi 1928 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELI 1928 (2235)
T ss_pred HHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccc
Confidence 7788999999998887768888999999988876443 122211100 000122222222
Q ss_pred --------------------------------------------------------------------------------
Q 046850 531 -------------------------------------------------------------------------------- 530 (686)
Q Consensus 531 -------------------------------------------------------------------------------- 530 (686)
T Consensus 1929 Wn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~ 2008 (2235)
T KOG1789|consen 1929 WNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKV 2008 (2235)
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHH
Confidence
Q ss_pred -----cCCh--HHHHHHHHHHHHhcCCCCc-HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCC
Q 046850 531 -----EGTT--AGKKDAATALFNLAVYNAN-KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCR 602 (686)
Q Consensus 531 -----~~~~--~~~~~Al~aL~nLs~~~~~-~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~ 602 (686)
..++ .....-..|+..|.+.+++ ...+-.-|.+|.++..+...+..+-..|+++|..|+.+.-+..++....
T Consensus 2009 lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~ 2088 (2235)
T KOG1789|consen 2009 LELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLP 2088 (2235)
T ss_pred HHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccc
Confidence 1111 1111112223333333332 2333335777887777765555666789999999999999999998888
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC
Q 046850 603 VLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG 659 (686)
Q Consensus 603 ~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~ 659 (686)
. +..++..+.. .+..-.-|+.+|-.+......+.+.+..+ .|++|.|+.|+...
T Consensus 2089 ~-i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK-~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2089 C-IDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLK-CGLVPYLLQLLDSS 2142 (2235)
T ss_pred c-chhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcHHHHHHHhccc
Confidence 7 7778876653 34444588888888877666666777777 99999999998654
No 93
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.72 E-value=3.4e-05 Score=62.60 Aligned_cols=40 Identities=30% Similarity=0.796 Sum_probs=32.0
Q ss_pred ccccCcccCcCc------------eE-ccCcccccHHhHHHHHhhCCCCCCCCC
Q 046850 285 RCPISLDLMRDP------------VI-VASGHTYDRNSIAQWINSGHHTCPKSG 325 (686)
Q Consensus 285 ~Cpic~~~m~dP------------v~-~~cght~cr~ci~~w~~~~~~~CP~c~ 325 (686)
.|+||++.+.+| +. ..|||.|-..||.+|+.. +.+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 399999988333 33 389999999999999987 66999996
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.66 E-value=0.0042 Score=67.70 Aligned_cols=221 Identities=19% Similarity=0.088 Sum_probs=128.0
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
..++.++..|. ..+.++...++..+. ...++ .++..|+..|.+.++.++..++.+|..+-
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------- 114 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------- 114 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence 35677777774 445565554443332 22111 13677777787777778888887777552
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
..++.+.|+..|++. +..++..++.++.. .. ....+.|..+|++.++.++..|+.+|..|-..
T Consensus 115 --~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~-~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 115 --GRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HR-HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred --chHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hc-cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 235566777777776 66777766666554 11 23456777777777777778888877776532
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHh----CCC-----------------ChHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRK----CRV-----------------LVPLLIDL 611 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~----~~~-----------------~i~~Lv~l 611 (686)
..++.|...+.+.++.++..|+..+..+.. +.....+.. .|. -++.|..+
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~l 248 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLREL 248 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHH
Confidence 345556666777777777777777766533 222211111 111 02333333
Q ss_pred HhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 612 LRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 612 L~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
++. +.++..++.+|..+-. ...++.|+..+.+. ..++.|.+.++.|.-
T Consensus 249 l~d--~~vr~~a~~AlG~lg~-------------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 249 LQA--AATRREALRAVGLVGD-------------VEAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred hcC--hhhHHHHHHHHHHcCC-------------cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 322 2244444444332221 33577777776543 388899988888865
No 95
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=4.2e-05 Score=74.52 Aligned_cols=74 Identities=36% Similarity=0.587 Sum_probs=68.9
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCC
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNV 352 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 352 (686)
++|+.++|.|+.++|++||+.++|-||.|.-|......-...-|+++.++....+.||.+++..|..|.+.|+.
T Consensus 207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w 280 (284)
T KOG4642|consen 207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW 280 (284)
T ss_pred cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999987556689999999989999999999999999999875
No 96
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.63 E-value=0.0006 Score=72.11 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=140.8
Q ss_pred HHHHHHhCCHHHHHHhhcCCCHHH--HHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 046850 429 RRIIAEAGAIPFLVTLLSSHDPRI--QENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLS 506 (686)
Q Consensus 429 r~~i~~~g~i~~Lv~lL~s~~~~~--~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls 506 (686)
...|...|++..|+.++.+++.+. +..|...|..+. ..+|++.++..| +..++.+-+.....+.....+++|.++.
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345666799999999999987655 888888887765 357888888876 6666666555547888999999999998
Q ss_pred cCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHHHHhcCCCchhHHHHHH
Q 046850 507 MID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA--NKASVVVAGAVPLLIELLMDDKAGITDDALA 583 (686)
Q Consensus 507 ~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~ 583 (686)
.++ +.+..++. .|++..++-..+..+|.+...++-||.|++.+.. .+.+|++..+..-|+.+-.+.+.-++-.|+-
T Consensus 251 KHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 877 46777888 8999999988888899999999999999998765 7889999998888888777777788888999
Q ss_pred HHHHHhCChhcHHHHHhCCC
Q 046850 584 VLALLLGCREGLEEIRKCRV 603 (686)
Q Consensus 584 ~L~nLa~~~~~~~~i~~~~~ 603 (686)
+++.|+.+.+--..+-..|.
T Consensus 330 AV~vlat~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGT 349 (832)
T ss_pred HHhhhhhhhhhhHHHhhccc
Confidence 99999987776666666665
No 97
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0068 Score=61.80 Aligned_cols=235 Identities=12% Similarity=0.113 Sum_probs=161.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHH--HHHhhcCCCHHHHHHHHHHhhccccc-cccH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPF--LVTLLSSHDPRIQENAVTALLNLSIF-DNNK 470 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~--Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k 470 (686)
+..+.++..+...+.++-..|...|..++. .+..-..+.+...... +.++-...+.-++......+..++.- ...-
T Consensus 128 eilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHH
Confidence 466788888888899999999999999998 5566666665544333 23333334555666666666665443 3335
Q ss_pred HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC--hHHHHHHHHHHH---
Q 046850 471 ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT--TAGKKDAATALF--- 545 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~Al~aL~--- 545 (686)
...-..|.+..|..-|+...+.-++.++......|...+..+..+.. .|.|+.+.+.+...+ |--+-.++....
T Consensus 207 neckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkff 285 (524)
T KOG4413|consen 207 NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKFF 285 (524)
T ss_pred hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence 55567788888888887643667889999999999999999999988 999999999986543 322333333333
Q ss_pred -HhcCCCCcHHHHHHc--CcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHH----HHhcCChH
Q 046850 546 -NLAVYNANKASVVVA--GAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLID----LLRFGSAK 618 (686)
Q Consensus 546 -nLs~~~~~~~~iv~~--G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~----lL~~~s~~ 618 (686)
++...+-.-+.+.++ -++...+.++...++++.+.|..+++.+.++.+|++.+...|. |..-. ..+.....
T Consensus 286 gkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp--paaehllarafdqnaha 363 (524)
T KOG4413|consen 286 GKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP--PAAEHLLARAFDQNAHA 363 (524)
T ss_pred cchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC--hHHHHHHHHHhcccccc
Confidence 333333222233322 2345556666778999999999999999999999999988875 43333 33334444
Q ss_pred HHHHHHHHHHHhhc
Q 046850 619 GKENSITLLLGLCK 632 (686)
Q Consensus 619 ~ke~A~~~L~~L~~ 632 (686)
-++.++.+|.+++.
T Consensus 364 kqeaaihaLaaIag 377 (524)
T KOG4413|consen 364 KQEAAIHALAAIAG 377 (524)
T ss_pred hHHHHHHHHHHhhc
Confidence 56777888888775
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.60 E-value=0.0043 Score=68.76 Aligned_cols=263 Identities=17% Similarity=0.167 Sum_probs=171.3
Q ss_pred HHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh----------cCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHH
Q 046850 414 AAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL----------SSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSI 482 (686)
Q Consensus 414 al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL----------~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~L 482 (686)
|+..|+.+++ ++.+...+....++..|..+- ...+..+...|+.+|.|+-.+... |..+.+.|+.+.+
T Consensus 1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3566777777 566666666666667776654 346789999999999999888766 8888899999999
Q ss_pred HHHHcCC----CCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhccc-----------------CChHHHHHH
Q 046850 483 IEVLQSG----KTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLRE-----------------GTTAGKKDA 540 (686)
Q Consensus 483 v~lL~~~----~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-----------------~~~~~~~~A 540 (686)
+..|+.. .+.+.......+||-++... +.+..+....+++..++..|.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999986 25788888999999887644 6676776656788877776541 123567789
Q ss_pred HHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc---------CCCchhHHHHHHHHHHHhCC-hhc-------HHHHHhCC-
Q 046850 541 ATALFNLAVYNANKASVVVAGAVPLLIELLM---------DDKAGITDDALAVLALLLGC-REG-------LEEIRKCR- 602 (686)
Q Consensus 541 l~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~---------~~~~~v~~~al~~L~nLa~~-~~~-------~~~i~~~~- 602 (686)
+++++|+..+.+....-...+.++.++.+|. .+.......++.+|.|+--. ... ...+.-.+
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 9999999877654332222334444444431 12334556666777766210 010 00010011
Q ss_pred --CChHHHHHHHhc----C-Ch---HHHHHHHHHHHHhhccChHHHHHHHHc---------------CCCChHHHHHHHh
Q 046850 603 --VLVPLLIDLLRF----G-SA---KGKENSITLLLGLCKDGGEEVARRLLI---------------NPRSIPSLQSLTT 657 (686)
Q Consensus 603 --~~i~~Lv~lL~~----~-s~---~~ke~A~~~L~~L~~~~~~~~~~~l~~---------------~~g~i~~L~~Ll~ 657 (686)
..+..|+.+|+. . .. ..-.-.+.+|..++... ...+..+.. +..+-..|++++.
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 126777777765 1 11 22234455666666654 344444432 4457789999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcc
Q 046850 658 DGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 658 ~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+..+.+|..++.+|-.+.+-.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhh
Confidence 999999999999998886643
No 99
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0017 Score=70.46 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=165.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..+-|...|+.++.+++..+=..|..+... ..+.-...+ ...++.++.-+.++++.+|..|+.-+..+..-....-..
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 445667788888888886554444443321 111111112 356889999999999999999998888776655554555
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHH---HHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAA---TIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~---~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.-.|++..++.++.+......++.+.. .|..+......+..+.- ...+..|...+.++..+.+..++..+..|-..
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 567888888888887622223333332 23344444333333433 56889999999999999999999999999988
Q ss_pred CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 551 NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 551 ~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
.++.-......+.+.|+.-|++.+..++..++.+++++|.++..... -.. +..|.++......-....+.-++..|
T Consensus 367 ~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~f-l~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 367 APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKF-LLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred CcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHH-HHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 88888888889999999999999999999999999999987665421 011 45555555555556777888888888
Q ss_pred hccChH
Q 046850 631 CKDGGE 636 (686)
Q Consensus 631 ~~~~~~ 636 (686)
|..-++
T Consensus 443 C~lL~a 448 (675)
T KOG0212|consen 443 CLLLNA 448 (675)
T ss_pred HHHhCH
Confidence 875433
No 100
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.59 E-value=9.5e-05 Score=52.71 Aligned_cols=40 Identities=38% Similarity=0.364 Sum_probs=36.9
Q ss_pred chhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 509 DDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 509 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
++++..+.+ .|++|.|+++|+++++++++.|+|+|.||+.
T Consensus 2 ~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467888888 9999999999999999999999999999974
No 101
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.56 E-value=0.00069 Score=68.20 Aligned_cols=181 Identities=17% Similarity=0.121 Sum_probs=119.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhC--chhHHHHHH--hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCc
Q 046850 403 LAMGSPEIQSQAAYELRLLAKTG--MDNRRIIAE--AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGA 478 (686)
Q Consensus 403 L~s~~~~~q~~al~~L~~La~~~--~~~r~~i~~--~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~ 478 (686)
-.+.+++.+.+|+..|+.+..++ ......+.+ ..++..+...+.+....+...|+.++..++..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35679999999999999999877 333444433 25667777888877888999999999999876544222223347
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCc-HHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHH
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRA-IPALVGLLREGTTAGKKDAATALFNLAVYNA-NKAS 556 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~ 556 (686)
++.|++.+.++ ...++..|..+|..+...-... ..+ ++.+...+.+.++.++..++..|..+....+ ....
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 89999999998 8889999999999997763311 223 5667777888899999999999998876554 2222
Q ss_pred HHH----cCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 557 VVV----AGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 557 iv~----~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
+-. ..+++.+...+.+.++.+++.|-.+++.+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 211 3467888888899999999999999999965
No 102
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.56 E-value=4.7e-05 Score=82.51 Aligned_cols=66 Identities=26% Similarity=0.594 Sum_probs=55.2
Q ss_pred CCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCC-cHHHHHHHHHH
Q 046850 280 IPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIP-NYTLKSLLHQW 346 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~-n~~l~~~i~~~ 346 (686)
+.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......+ ....++.+..|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 67889999999999999995 99999999999999998 899999988876555444 34566666666
No 103
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=5.8e-05 Score=80.66 Aligned_cols=73 Identities=21% Similarity=0.433 Sum_probs=58.5
Q ss_pred CCCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCC-----CCCcHHHHHHHHHHHHh
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA-----LIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~-----l~~n~~l~~~i~~~~~~ 349 (686)
.+..++.+|.|-+|...+.+||+++|||+||..||.+-... ...||.|+..+.... ..+|.....+|..|+..
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 34466899999999999999999999999999999997664 788999998876421 22466666777777654
No 104
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0059 Score=62.27 Aligned_cols=246 Identities=13% Similarity=0.106 Sum_probs=169.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhH----HHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHH
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNR----RIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r----~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
.+.|-..|..++..++.-++..+.-+..+.+.|- ..++++|..+.++..+-..|.++...|...+..++.....-+
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3444455556666666667776666655444322 234578999999999999999999999999999998888788
Q ss_pred HHHhcCcHHHHHHH--HcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-CChHHHHHHHHHHHHhc
Q 046850 472 LIMAAGAIDSIIEV--LQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-GTTAGKKDAATALFNLA 548 (686)
Q Consensus 472 ~i~~~g~l~~Lv~l--L~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs 548 (686)
.+.+...+..+-.. --.. +.-+|......+..+++.+.-......++|.+..|..=|+. .+.-++.+++.....|+
T Consensus 164 aiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 88877666654322 2222 45567777788888776664433344448888888777765 55678888999999999
Q ss_pred CCCCcHHHHHHcCcHHHHHHHhcC--CCchhHHHHHHHHHHH----hCChhcHHHHHhCC-CChHHHHHHHhcCChHHHH
Q 046850 549 VYNANKASVVVAGAVPLLIELLMD--DKAGITDDALAVLALL----LGCREGLEEIRKCR-VLVPLLIDLLRFGSAKGKE 621 (686)
Q Consensus 549 ~~~~~~~~iv~~G~v~~Ll~lL~~--~~~~v~~~al~~L~nL----a~~~~~~~~i~~~~-~~i~~Lv~lL~~~s~~~ke 621 (686)
.....++.+.+.|+++.+...+.. .++--.-.++.....+ +..+-.-+++.+.- ..+..-.+++.+.+++..+
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 999999999999999999999843 3444444444444443 32222223333211 0145556778889999999
Q ss_pred HHHHHHHHhhccChHHHHHHHHc
Q 046850 622 NSITLLLGLCKDGGEEVARRLLI 644 (686)
Q Consensus 622 ~A~~~L~~L~~~~~~~~~~~l~~ 644 (686)
.|+.++..|.++ .+..+.+.+
T Consensus 323 aAiDalGilGSn--teGadlllk 343 (524)
T KOG4413|consen 323 AAIDALGILGSN--TEGADLLLK 343 (524)
T ss_pred HHHHHHHhccCC--cchhHHHhc
Confidence 999999999887 445555555
No 105
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.48 E-value=0.0093 Score=64.30 Aligned_cols=250 Identities=19% Similarity=0.117 Sum_probs=174.6
Q ss_pred HHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCC-CHHHH
Q 046850 417 ELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGK-TMEAR 495 (686)
Q Consensus 417 ~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~e~~ 495 (686)
.|..+.+.++.-|..+.-....+.+..++-+++.+++-.|..++..+..+...-..+.+.+.--.++..|.... ...-|
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 34445555665555555444566666656566699999999999999988888888888877777777777653 55679
Q ss_pred HHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCc
Q 046850 496 ENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKA 575 (686)
Q Consensus 496 ~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~ 575 (686)
++|...+..+...+.....+ . .|++..++.+..+.+.+.+..|+.+|+-|+..+ -..++..|++..|++.+.++..
T Consensus 86 ~QALkliR~~l~~~~~~~~~-~-~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEI-P-RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcCCcccC-C-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH
Confidence 99999998887765444333 3 688999999999988999999999999998764 3456688999999999988766
Q ss_pred hhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHH-hc------CCh---HHHHHHHHHHHHhhccChHHHHHHHHcC
Q 046850 576 GITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLL-RF------GSA---KGKENSITLLLGLCKDGGEEVARRLLIN 645 (686)
Q Consensus 576 ~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL-~~------~s~---~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 645 (686)
.+.+..+.++-.+-.+|..|+.+...-. +..++.-+ +. .+. ..+..+..+...|-+..| .-.+...
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~d-L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G---Ll~l~~~ 237 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFD-LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG---LLYLSMN 237 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCcc-HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc---eeeeecC
Confidence 6888899999999999999887665445 55555532 22 111 223333333333333322 1111111
Q ss_pred -CCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 646 -PRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 646 -~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
...++.|+..+...++++|+....++--+
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 13577888888888888888776655444
No 106
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.021 Score=60.59 Aligned_cols=239 Identities=16% Similarity=0.134 Sum_probs=169.8
Q ss_pred HHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc------cc----HHHHHhcCcHHHH
Q 046850 413 QAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD------NN----KILIMAAGAIDSI 482 (686)
Q Consensus 413 ~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~------~~----k~~i~~~g~l~~L 482 (686)
..+..+..+|. -|+---.+++.++|+.|+.+|.++|.++...++..|..|+..+ ++ -..+++.++++.|
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 35566777776 6777778899999999999999999999999999999998543 22 3345567899999
Q ss_pred HHHHcCCCCHH------HHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCC--hHHHHHHHHHHHHhcCCCC-
Q 046850 483 IEVLQSGKTME------ARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGT--TAGKKDAATALFNLAVYNA- 552 (686)
Q Consensus 483 v~lL~~~~~~e------~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~Al~aL~nLs~~~~- 552 (686)
++-+..- +.. ...++.+.+-|+.... +....+++ .|.+..|+.-+.... ...+..|...|.-+-.+..
T Consensus 182 vqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e 259 (536)
T KOG2734|consen 182 VQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE 259 (536)
T ss_pred HHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch
Confidence 9887653 322 3456677777776655 56667777 799999888665432 3567778888887777666
Q ss_pred cHHHHHHcCcHHHHHHHhc---CC------CchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLM---DD------KAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENS 623 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~---~~------~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A 623 (686)
++...-.-.++..+++-+. .. ...+.+....+|+.+-..+.++..++...+ +....-+++. ....+..|
T Consensus 260 ~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EG-lqLm~Lmlr~-Kk~sr~Sa 337 (536)
T KOG2734|consen 260 NRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEG-LQLMNLMLRE-KKVSRGSA 337 (536)
T ss_pred hhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcccc-HHHHHHHHHH-HHHhhhhH
Confidence 7777777788888888772 11 234566666777777779999999998887 6655556654 55677889
Q ss_pred HHHHHHhhccCh-HHHHHHHHcCCCChHHHHHHHh
Q 046850 624 ITLLLGLCKDGG-EEVARRLLINPRSIPSLQSLTT 657 (686)
Q Consensus 624 ~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~ 657 (686)
+.+|-....+.. ...+..+++ .+....+..+..
T Consensus 338 lkvLd~am~g~~gt~~C~kfVe-~lGLrtiF~~FM 371 (536)
T KOG2734|consen 338 LKVLDHAMFGPEGTPNCNKFVE-ILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHhCCCchHHHHHHHH-HHhHHHHHHHHh
Confidence 999887776643 245556666 333444444433
No 107
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0014 Score=72.27 Aligned_cols=271 Identities=17% Similarity=0.168 Sum_probs=173.9
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccH
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK 470 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 470 (686)
....++++++..++.++.++..|+.++....-.. +...+.. ..+++.+..+-..+++++|.+.+.+|.-|..-. -
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr--~ 247 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR--P 247 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc--H
Confidence 4467899999999999999999999997765422 2333332 346677777777899999999999998886422 2
Q ss_pred HHHHh--cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc-CCCcHHHHHHhcccCC--------------
Q 046850 471 ILIMA--AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG-RPRAIPALVGLLREGT-------------- 533 (686)
Q Consensus 471 ~~i~~--~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~-------------- 533 (686)
.+++- .++++.+++.-++. +.++-..|+.....++..+..+..+.. ....||.|+.-+...+
T Consensus 248 dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred HhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 33332 36777777777777 888999999999999988866655532 1245666654322100
Q ss_pred ---------h---------------------------------HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHh-
Q 046850 534 ---------T---------------------------------AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELL- 570 (686)
Q Consensus 534 ---------~---------------------------------~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL- 570 (686)
| ..++-.+.+|--|+ .+....+++.++.+|
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk 399 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLK 399 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHH
Confidence 0 11121222221111 123344566666666
Q ss_pred ---cCCCchhHHHHHHHHHHHhCChhcHHHHHhC-CCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 046850 571 ---MDDKAGITDDALAVLALLLGCREGLEEIRKC-RVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINP 646 (686)
Q Consensus 571 ---~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~-~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~ 646 (686)
.+++-.+++.+.-+|+.+|. .+-+.+... +.++|.|+.+|....+-+|.-.+.+|...+..--.+-......
T Consensus 400 ~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-- 475 (885)
T KOG2023|consen 400 EHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-- 475 (885)
T ss_pred HHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--
Confidence 45567788888888888875 112222221 1247888889988888899888888876654321111111111
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 647 RSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 647 g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
.++..|++-+-+++.++++.|......+.+-.
T Consensus 476 pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 13555666667889999999999998887653
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.046 Score=58.18 Aligned_cols=269 Identities=15% Similarity=0.156 Sum_probs=183.2
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCc-----hh----HHHHHHhCCHHHHHHhhcCC------CHHHHHHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGM-----DN----RRIIAEAGAIPFLVTLLSSH------DPRIQENAVT 458 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~-----~~----r~~i~~~g~i~~Lv~lL~s~------~~~~~~~A~~ 458 (686)
..++.|+++|.+.+.++-...+..|..|+-.+. +. -..+++.++++.|+.-+..- ...-..+++.
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 478899999999999999999999998875332 22 22455678888888776542 3345667888
Q ss_pred Hhhcccccccc-HHHHHhcCcHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCch-hhhHhhcCCCcHHHHHHhcc---cC
Q 046850 459 ALLNLSIFDNN-KILIMAAGAIDSIIEVLQSG-KTMEARENAAATIFSLSMIDD-CKVMIGGRPRAIPALVGLLR---EG 532 (686)
Q Consensus 459 aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~~-~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~---~~ 532 (686)
.+.|+..-.+. ...+++.|.+.-|+.-+... .-..-+..|..+|.-+-.++. ++...+. -.+|..++.-+. ..
T Consensus 205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchhhcc
Confidence 89998876555 78888888888887755443 234557888888888877764 8888888 788888887653 22
Q ss_pred C------hHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHH---HHHhCCC
Q 046850 533 T------TAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLE---EIRKCRV 603 (686)
Q Consensus 533 ~------~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~---~i~~~~~ 603 (686)
+ .+..++-...|+.+...+.|+.+++...+++...-++.. ....+-.++++|-....++++.. .+++..+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 2 367788888999999999999999998888776655644 33455668899998887776544 4566666
Q ss_pred ChHHHHH-HHhcC---------ChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 046850 604 LVPLLID-LLRFG---------SAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRL 673 (686)
Q Consensus 604 ~i~~Lv~-lL~~~---------s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 673 (686)
+..+.. +++.. ....-++.+.+|+.+-.+.....+ ...|..+..+..+++.+.-.--++.
T Consensus 363 -LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~~~~r---------~R~l~KF~End~EKvdRl~el~lky 432 (536)
T KOG2734|consen 363 -LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLDGVHR---------QRLLRKFVENDFEKVDRLMELYLKY 432 (536)
T ss_pred -HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhccccHH---------HHHHHHHhccccHHHHHHHHHHHHH
Confidence 777776 34322 223556778888777654311111 2334444555555555444444444
Q ss_pred H
Q 046850 674 L 674 (686)
Q Consensus 674 l 674 (686)
.
T Consensus 433 ~ 433 (536)
T KOG2734|consen 433 L 433 (536)
T ss_pred H
Confidence 3
No 109
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.38 E-value=0.00082 Score=56.43 Aligned_cols=87 Identities=31% Similarity=0.402 Sum_probs=70.5
Q ss_pred HHHHHHHh-hcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 396 AEFLVGKL-AMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 396 i~~Lv~~L-~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
|+.|++.| ++.++.++..|++.|..+-. ..++|.|+.+++++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888988 78899999999988873321 135899999999999999999999999983
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHH
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIF 503 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~ 503 (686)
...+++.|.+++.+..+..+|..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34589999999988756677888888874
No 110
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.35 E-value=6.2e-05 Score=70.23 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=45.5
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHH
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLL 343 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i 343 (686)
.|.|.||..-++.||++.|||.||..|.-+-+.. ...|.+|++... ..+.....++.++
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~-G~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY-GRFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc-cceeHHhhHHHHH
Confidence 4999999999999999999999999998887776 678999987642 2233333344443
No 111
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.25 E-value=0.0014 Score=66.06 Aligned_cols=185 Identities=19% Similarity=0.138 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHHHhccCc---hhhhHhhc-CCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHH
Q 046850 490 KTMEARENAAATIFSLSMID---DCKVMIGG-RPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPL 565 (686)
Q Consensus 490 ~~~e~~~~aa~~L~~Ls~~~---~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~ 565 (686)
.+.+.|..|+..|..+.... .....+.. ....+..+...+.+....+...|+.++..|+..-...-.-.-..++|.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 38899999999999987665 23333322 123456777777777778999999999999876554433334567899
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccCh--HHHHH-HH
Q 046850 566 LIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGG--EEVAR-RL 642 (686)
Q Consensus 566 Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--~~~~~-~l 642 (686)
|++.+.+....+.+.|..+|..++.+-.....++ ++.+...+.+.++.+|..++..|..+....+ ..... ..
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 9999999888999999999999987544111110 3555556777899999999999988876654 11111 10
Q ss_pred HcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 046850 643 LINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCCSQ 680 (686)
Q Consensus 643 ~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 680 (686)
.- ..+++.+...+.++++.+|+.|..++..+....+.
T Consensus 174 ~~-~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 174 FL-KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HH-HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 00 12588899999999999999999999998776543
No 112
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.24 E-value=0.053 Score=57.90 Aligned_cols=184 Identities=29% Similarity=0.335 Sum_probs=130.2
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..+..+++.+.+.+..++..|+..+..+.. .-++|.+..+|.+.++.++..|+.+|+++-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 367788889998888999998888554443 2378999999999999999999998887732
Q ss_pred HhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCCh------------HHHHHH
Q 046850 474 MAAGAIDSIIEVLQS-GKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTT------------AGKKDA 540 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------------~~~~~A 540 (686)
..+++.++..|.. + +..+|..++.+|..+-. ..++.++++.+.+... .++..+
T Consensus 104 --~~a~~~li~~l~~d~-~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 --PEAVPPLVELLENDE-NEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred --hhHHHHHHHHHHcCC-cHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 3478899999995 6 99999999999987743 4458888888877652 234444
Q ss_pred HHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHH
Q 046850 541 ATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGK 620 (686)
Q Consensus 541 l~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~k 620 (686)
+.+|..+-. .-.++.+...+.+....++..|...|..+.... ... .+.+...+...+..++
T Consensus 170 ~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~-~~~l~~~~~~~~~~vr 230 (335)
T COG1413 170 AEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEA-ADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhH-HHHHHHHhcCCCHHHH
Confidence 444443322 235677888888888889999988888887654 112 3455555555555555
Q ss_pred HHHHHHHHH
Q 046850 621 ENSITLLLG 629 (686)
Q Consensus 621 e~A~~~L~~ 629 (686)
..++..|..
T Consensus 231 ~~~~~~l~~ 239 (335)
T COG1413 231 KAALLALGE 239 (335)
T ss_pred HHHHHHhcc
Confidence 554444433
No 113
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.011 Score=64.49 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=162.9
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh
Q 046850 435 AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM-AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 435 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
.++||.|-+-+...++.++...+.-|..|-.- +..+.+- -...++.|..+|.+. +.++|..+-.+|.++-..=.+..
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHhcCc
Confidence 45667666666667888888777766665321 1122222 135678889999998 99999877777766643222333
Q ss_pred HhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCc-hhHHHHHH---HHHHHh
Q 046850 514 MIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKA-GITDDALA---VLALLL 589 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~-~v~~~al~---~L~nLa 589 (686)
...+....++.++.-+.++++.++..|+..|.-...-.+...-..-+|++..++.++.+... .+.+.+.. .|..++
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 33233678999999999999999999999999998877766666677888888888876544 34444332 244455
Q ss_pred CChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHH
Q 046850 590 GCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADA 669 (686)
Q Consensus 590 ~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~ 669 (686)
..+..... ++.|..+..+.+++.....+.|-.+...+..|-...+.+.... ...+.+.|+.-+.+.++.+-..+..
T Consensus 324 s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h---~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH---NDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh---ccHHHHHHHHhhcCchhHHHHHHHH
Confidence 55555544 5555547778888888888999999998888877654433222 2457788888888888877777777
Q ss_pred HHHHHHhc
Q 046850 670 LLRLLNRC 677 (686)
Q Consensus 670 lL~~l~~~ 677 (686)
++..+-..
T Consensus 400 lla~i~~s 407 (675)
T KOG0212|consen 400 LLASICSS 407 (675)
T ss_pred HHHHHhcC
Confidence 77766544
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.20 E-value=0.017 Score=64.07 Aligned_cols=236 Identities=19% Similarity=0.216 Sum_probs=157.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC-----CHHHHHHHHHHhhccccccc-cHHHHHh-cC
Q 046850 405 MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH-----DPRIQENAVTALLNLSIFDN-NKILIMA-AG 477 (686)
Q Consensus 405 s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLs~~~~-~k~~i~~-~g 477 (686)
..+.++..+|+++|.|+...++..|..+++.|..+.++..|+.. +.++.-....+|.-++.... .+..+++ .+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999876 77888888888877776543 3666664 47
Q ss_pred cHHHHHHHHcC--------C--------CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-------C--
Q 046850 478 AIDSIIEVLQS--------G--------KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-------G-- 532 (686)
Q Consensus 478 ~l~~Lv~lL~~--------~--------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-------~-- 532 (686)
++..|+..|.. . ...+....+..++||+......... ....+.++.|+.++.. .
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 88888776642 0 1445677889999999776543322 1113455555555431 1
Q ss_pred ChHHHHHHHHHHHHhcCCCCc--------HHH----HHHcCcHHHHHHHhcC-----C---CchhHHHHHHHHHHHhCCh
Q 046850 533 TTAGKKDAATALFNLAVYNAN--------KAS----VVVAGAVPLLIELLMD-----D---KAGITDDALAVLALLLGCR 592 (686)
Q Consensus 533 ~~~~~~~Al~aL~nLs~~~~~--------~~~----iv~~G~v~~Ll~lL~~-----~---~~~v~~~al~~L~nLa~~~ 592 (686)
.......++.+|.|+-..... ... ......+..|+.+|.. . -.......+.+|.+++...
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 136677888888888321100 000 1112346677777721 1 1245666788888888753
Q ss_pred -hcHHHHHh---------------CCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHH
Q 046850 593 -EGLEEIRK---------------CRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARR 641 (686)
Q Consensus 593 -~~~~~i~~---------------~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~ 641 (686)
..|+.+-. .+.+-..|++++.+..+.+|..+...|+.||..+....+..
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~ 346 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKY 346 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33433322 22335778888887779999999999999997765444444
No 115
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00018 Score=71.81 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=49.3
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHh
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~ 349 (686)
.|.|-||.+.+.+||++.|||+||..|-.+-+.. ...|++|++.. +..+.+...|...+..-...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t-~g~~~~akeL~~~L~~kks~ 305 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT-HGSFNVAKELLVSLKLKKSD 305 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc-ccccchHHHHHHHHHhhhhh
Confidence 5899999999999999999999999998888776 67899998865 33444444454444443333
No 116
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.0034 Score=67.78 Aligned_cols=199 Identities=13% Similarity=0.033 Sum_probs=143.2
Q ss_pred HHHHHhhcccccccc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccC
Q 046850 455 NAVTALLNLSIFDNN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREG 532 (686)
Q Consensus 455 ~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~ 532 (686)
.++..|..+|.+-.. |.-+....+.++|+++|+.+ ...+...+...++|+...= ..+..+.+ .|.|..|+.++.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~sK 485 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhcc
Confidence 344455556554333 77777888999999999998 6666777888888886644 45667777 89999999999988
Q ss_pred ChHHHHHHHHHHHHhcCCCCc--HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC----ChhcHHHHHhCCC---
Q 046850 533 TTAGKKDAATALFNLAVYNAN--KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG----CREGLEEIRKCRV--- 603 (686)
Q Consensus 533 ~~~~~~~Al~aL~nLs~~~~~--~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~----~~~~~~~i~~~~~--- 603 (686)
+...+++..|.|.++..+..+ +-+++..-++..++.+..++.-.++..++.+|.|+.. +++.+...+....
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 889999999999999987763 5566778888999999999999999999999999954 2223333333332
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHH
Q 046850 604 LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLT 656 (686)
Q Consensus 604 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 656 (686)
+...|++.++..+|-..+..+.+|.+++..++ .....++.....+..+.+++
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~-~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDD-TLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccc-hHHHHHHhHHHHHHHHHHHH
Confidence 24556666777888877778888888877653 33333333233344444433
No 117
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.14 E-value=0.0011 Score=55.55 Aligned_cols=86 Identities=37% Similarity=0.517 Sum_probs=70.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhh
Q 046850 438 IPFLVTLL-SSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIG 516 (686)
Q Consensus 438 i~~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~ 516 (686)
||.|++.| +++++.++..|+.+|+++-. ..+++.|+.+++++ +..+|..|+.+|..+ +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDE-DPMVRRAAARALGRI----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSS-SHHHHHHHHHHHHCC----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHh----------C
Confidence 68899988 88999999999999996631 24699999999888 999999999999887 2
Q ss_pred cCCCcHHHHHHhcccCC-hHHHHHHHHHHH
Q 046850 517 GRPRAIPALVGLLREGT-TAGKKDAATALF 545 (686)
Q Consensus 517 ~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~ 545 (686)
. ..+++.|.+++.+++ ..++..|+.+|.
T Consensus 60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 D-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3 568999999998765 456888888874
No 118
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.034 Score=61.75 Aligned_cols=268 Identities=19% Similarity=0.195 Sum_probs=171.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHH-HHHHhhccccccccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQEN-AVTALLNLSIFDNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~-A~~aL~nLs~~~~~k~~ 472 (686)
...+.+.+.+.+.....+..|.+.+..+..+. .-..+.+.+++..|...+.......... +.-+...+..+-. .
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~ 208 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---P 208 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---C
Confidence 35567778888888889999999999888743 3445566788888888887655443332 2222111111111 1
Q ss_pred HHhcCcH---HHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 473 IMAAGAI---DSIIEVLQSGKTMEARENAAATIFSLSM-IDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 473 i~~~g~l---~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
..+.+.+ +.++....+. ..++|..|..+...+-. .+.+ ...-.+|.++.-+.....+.+..++..|..++
T Consensus 209 ~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~~~~~~-----aVK~llpsll~~l~~~kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMRCLSAY-----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMA 282 (569)
T ss_pred CCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhcCcc-----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1233444 4444444444 55667666655544421 1111 11334555555555557789999999999999
Q ss_pred CCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC---hhcH-------HHH--------------------
Q 046850 549 VYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC---REGL-------EEI-------------------- 598 (686)
Q Consensus 549 ~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~---~~~~-------~~i-------------------- 598 (686)
...+..-...-..++|.+.+.|.+..+.+++.+..+|..++.. ++-. +.+
T Consensus 283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 9988888888889999999999999999999999999988752 2110 111
Q ss_pred --HhCCCChHHHHHHHhc----CChHHHHHHHHHHHHhhccC--hHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHH
Q 046850 599 --RKCRVLVPLLIDLLRF----GSAKGKENSITLLLGLCKDG--GEEVARRLLINPRSIPSLQSLTTDGSLKARRKADAL 670 (686)
Q Consensus 599 --~~~~~~i~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~l 670 (686)
++... +..++.+|+. .+...+..++.+..|+|.-- +......+.+ ++|-|...+.+-.|.+|.-+...
T Consensus 363 ~~V~~ps-LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~---Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 363 AEVDAPS-LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS---LLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred eeecchh-HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH---HhhHHHHHhcCCChhHHHHHHHH
Confidence 11112 4455555554 45567789999999999864 2333333322 58888888888889999888877
Q ss_pred H-HHHHh
Q 046850 671 L-RLLNR 676 (686)
Q Consensus 671 L-~~l~~ 676 (686)
| .++++
T Consensus 439 L~~l~e~ 445 (569)
T KOG1242|consen 439 LGALLER 445 (569)
T ss_pred HHHHHHH
Confidence 7 44433
No 119
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.12 E-value=0.01 Score=55.23 Aligned_cols=129 Identities=17% Similarity=0.175 Sum_probs=105.1
Q ss_pred HhhcCCCcHHHHHHhcccCCh------HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC--CchhHHHHHHHH
Q 046850 514 MIGGRPRAIPALVGLLREGTT------AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDD--KAGITDDALAVL 585 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~~------~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~--~~~v~~~al~~L 585 (686)
.+.. .+++..|++++.++.. .....++.++..|-.+.-.-...++...+..++..+... +..+...|+.+|
T Consensus 6 EFI~-~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFIS-RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHh-ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 3445 7899999999988773 777889999999988876667778888888888888543 688999999999
Q ss_pred HHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHH
Q 046850 586 ALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLL 643 (686)
Q Consensus 586 ~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 643 (686)
.++..+.......+....-++.|+..|+..++..+.+|++.+-.|....++.-++.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 9999877776666666655999999999999999999999999988777665555443
No 120
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00032 Score=69.31 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=41.8
Q ss_pred CCCcccccCcccCcCceEc-cCcccccHHhHHHHHhh-CCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINS-GHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~-~~~~CP~c~~~l~ 329 (686)
..+-.||+|++.-..|.++ +|||.||..||..-+.. ..++||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4567999999999999988 59999999999887764 3689999997654
No 121
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.11 E-value=0.07 Score=58.30 Aligned_cols=151 Identities=26% Similarity=0.179 Sum_probs=117.3
Q ss_pred CHHHHHHhhc-CCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHh
Q 046850 437 AIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMI 515 (686)
Q Consensus 437 ~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 515 (686)
+++.++..|. .++.++...++.+|..... ..++..++..|.+. +..++..++.+|..+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED----------ALDLRSVLAVLQAG-PEGLCAGIQAALGWL---------- 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCC-CHHHHHHHHHHHhcC----------
Confidence 6788888884 5677777766655543311 12489999999988 888999999998743
Q ss_pred hcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcH
Q 046850 516 GGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 516 ~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
.. .++.+.|+.+|.+.++.++..++.++... .....+.+..+|.+.++.++..|+.+|+.+..
T Consensus 114 ~~-~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 114 GG-RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred Cc-hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 44 77899999999999999999888777762 12346788899999999999999999998854
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
... ++.|...+.+.++.++..|+..|..+-
T Consensus 177 -----~~a-~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 -----RLS-ESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred -----ccc-hHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 133 788888888889999999998876664
No 122
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.09 E-value=0.0085 Score=55.59 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=78.1
Q ss_pred CCCCccchhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhccCCchhHHHhhhHHHHHHH
Q 046850 34 MENLPSVQMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCKDGSSLWGLMQIELVSNQF 113 (686)
Q Consensus 34 ~~~~~~~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyll~~~~~i~~~f 113 (686)
..+.....|..+.++..-++.|.|+++|+...+..++.+-..-++.|...|++|+.|++.|++.+ -|=++....+..++
T Consensus 25 ~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki 103 (147)
T PF05659_consen 25 ASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKI 103 (147)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHH
Confidence 33344455778889999999999999999877644444447889999999999999999999875 56667888999999
Q ss_pred HHHHHHHHHHhhc-CCCC
Q 046850 114 YVLVKEMGRALDI-LPLS 130 (686)
Q Consensus 114 ~~~~~~l~~~L~~-lp~~ 130 (686)
+++..+|.+.++. +|+.
T Consensus 104 ~~le~~l~~f~~v~~q~~ 121 (147)
T PF05659_consen 104 EELEESLRRFIQVDLQLH 121 (147)
T ss_pred HHHHHHHHHHhcchhHHH
Confidence 9999999999885 4544
No 123
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.026 Score=62.63 Aligned_cols=244 Identities=16% Similarity=0.149 Sum_probs=154.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
.++.++....+....+|..|..+.+.+...-+...... .+|.++.-+..........++..|+.++...+.+-...
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 34445555556677788877777776665322221111 23444443333366788899999999987777777777
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
...++|.+.++|-+. ..++|..+..+|..++..-+|.. | ...+|.|++.+.+++..+. .++..|..=+.-
T Consensus 293 lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I---~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV---- 362 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-I---QKIIPTLLDALADPSCYTP-ECLDSLGATTFV---- 362 (569)
T ss_pred HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-H---HHHHHHHHHHhcCcccchH-HHHHhhcceeee----
Confidence 889999999999998 99999999999999998887777 3 3469999999987653222 222222221111
Q ss_pred HHHHHcCcHHHHHHH----hcCCCchhHHHHHHHHHHHhCChhcHHHHHh-CCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 046850 555 ASVVVAGAVPLLIEL----LMDDKAGITDDALAVLALLLGCREGLEEIRK-CRVLVPLLIDLLRFGSAKGKENSITLLLG 629 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~l----L~~~~~~v~~~al~~L~nLa~~~~~~~~i~~-~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~ 629 (686)
..|++-.+..++.+ |...+..+...++.+++|+|.--+..+.+.. .+.++|.|-..+...-|++|.-+..+|..
T Consensus 363 -~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 363 -AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred -eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence 11222333344444 4556778889999999999974433333221 11125555555555679999999999877
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHhcC
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTTDG 659 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~ 659 (686)
+-...+.... .+.+|.+.+.....
T Consensus 442 l~e~~g~~~f------~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 442 LLERLGEVSF------DDLIPELSETLTSE 465 (569)
T ss_pred HHHHHHhhcc------cccccHHHHhhccc
Confidence 7654332211 33466666655433
No 124
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.05 E-value=0.00058 Score=56.04 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=35.2
Q ss_pred ccccCcccCcC-ceEc-cCcccccHHhHHHHHhh--CCCCCCCCCcccc
Q 046850 285 RCPISLDLMRD-PVIV-ASGHTYDRNSIAQWINS--GHHTCPKSGQRLI 329 (686)
Q Consensus 285 ~Cpic~~~m~d-Pv~~-~cght~cr~ci~~w~~~--~~~~CP~c~~~l~ 329 (686)
.||.|...-.+ |++. .|+|.|-..||.+|+.. +..+||.||+...
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 46666665544 6555 89999999999999996 3579999998753
No 125
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.04 E-value=0.0011 Score=46.73 Aligned_cols=39 Identities=38% Similarity=0.572 Sum_probs=36.3
Q ss_pred chhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 046850 426 MDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLS 464 (686)
Q Consensus 426 ~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs 464 (686)
++++..+.+.|+++.|+.+|.+++.+++..|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 358889999999999999999999999999999999987
No 126
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00028 Score=70.64 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=44.0
Q ss_pred ccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 285 RCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 285 ~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
.|+||...+.-||.+.|+|-||.-||+.-...+..+||+|+.++++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 69999999999999999999999999999888889999999998765
No 127
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.015 Score=67.48 Aligned_cols=199 Identities=17% Similarity=0.093 Sum_probs=149.0
Q ss_pred HHhCCHHHHHHhhcCCCHHHHHHHHHHhhc-cccccccHHHHHhcCcHHHHHHHHcC-CC-CHHHHHHHHHHHHHhccCc
Q 046850 433 AEAGAIPFLVTLLSSHDPRIQENAVTALLN-LSIFDNNKILIMAAGAIDSIIEVLQS-GK-TMEARENAAATIFSLSMID 509 (686)
Q Consensus 433 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~n-Ls~~~~~k~~i~~~g~l~~Lv~lL~~-~~-~~e~~~~aa~~L~~Ls~~~ 509 (686)
..-|+.|.++++|+++-.+++.--+-+=.. |+.+..-+..+++.++-..++++|.. +. +.|-|..|+-+|..+..+-
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 345999999999999988887655544444 44454448888888888888888887 32 6789999999999998775
Q ss_pred h-hhhHhhcCCCcHHHHHHhcccC-ChHHHHHHHHHHHHhcCCC-CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHH
Q 046850 510 D-CKVMIGGRPRAIPALVGLLREG-TTAGKKDAATALFNLAVYN-ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLA 586 (686)
Q Consensus 510 ~-~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nLs~~~-~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~ 586 (686)
. .+..... .+.|....+.|.++ .+-.+.=++-+|..|-.+- .+|..-++.++...|..+|.++-++++..|+.+|+
T Consensus 589 ~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 3 4555556 88999999999886 4566666888888887654 47888888999999999999999999999999999
Q ss_pred HHhCC-----hhcHHHH---Hh--------CCCChH----HHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 587 LLLGC-----REGLEEI---RK--------CRVLVP----LLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 587 nLa~~-----~~~~~~i---~~--------~~~~i~----~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
.+-++ ++....+ ++ .+. ++ .++.++..+++-++...+..|..+..+
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~-i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL-IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHH-HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 98762 3332222 11 111 22 566677778888888888888877765
No 128
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00039 Score=79.06 Aligned_cols=48 Identities=23% Similarity=0.572 Sum_probs=42.5
Q ss_pred CCCcccccCcccCcC-----ceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRD-----PVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~d-----Pv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
..+-.|+||.+.|.. |-.++|||.|+..|+..|++. ..+||.|+..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 347799999999988 778899999999999999998 899999998543
No 129
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0006 Score=71.11 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=40.0
Q ss_pred cccccCcccCc--Cce-EccCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 284 FRCPISLDLMR--DPV-IVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 284 ~~Cpic~~~m~--dPv-~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
+.|.||++-+. |-+ +++|+|.|-..||..|+......||+|++.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 69999999886 444 5699999999999999998656799999876543
No 130
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0086 Score=64.81 Aligned_cols=261 Identities=14% Similarity=0.091 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHHHHHHcCCC
Q 046850 412 SQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSIIEVLQSGK 490 (686)
Q Consensus 412 ~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~~~ 490 (686)
..++-.|..+++.-..-|.-+.++.+++.|+.+|+.++..+.--+...++|+...=.| +..+.+.|.+..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 3445566677776556677788888999999999987777777778888888766555 99999999999999999988
Q ss_pred CHHHHHHHHHHHHHhccCchhhh--HhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC----cHHHHHHcC---
Q 046850 491 TMEARENAAATIFSLSMIDDCKV--MIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA----NKASVVVAG--- 561 (686)
Q Consensus 491 ~~e~~~~aa~~L~~Ls~~~~~~~--~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~----~~~~iv~~G--- 561 (686)
+...+.+..|+|..+-.++.+-. .... .-++..++++.+++.-.++...+..|.|++-+.. .+..++..-
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 88999999999999988875443 3344 5678899999999888999999999999986433 222222222
Q ss_pred -cHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHH-hCCCChHHHHHHHhc--CC----h----------------
Q 046850 562 -AVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIR-KCRVLVPLLIDLLRF--GS----A---------------- 617 (686)
Q Consensus 562 -~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~-~~~~~i~~Lv~lL~~--~s----~---------------- 617 (686)
....|++.+...++-.....+.+|.++|..++....++ +...++..+.++|.. +. |
T Consensus 565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 565 YLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 23345555556667777777899988887666544432 222213333333321 00 0
Q ss_pred -------------------------------HHHHHHHHHHHHhhccC--------hHHHHHHHHcCCCChHHHHHHHhc
Q 046850 618 -------------------------------KGKENSITLLLGLCKDG--------GEEVARRLLINPRSIPSLQSLTTD 658 (686)
Q Consensus 618 -------------------------------~~ke~A~~~L~~L~~~~--------~~~~~~~l~~~~g~i~~L~~Ll~~ 658 (686)
++--...++..++.... .-+.++.+.. .|+-..|+.+...
T Consensus 645 ~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~-~G~~e~l~k~q~~ 723 (743)
T COG5369 645 NLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCA-NGIREWLVKIQAK 723 (743)
T ss_pred cccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHH-ccHHHHHHHHhcc
Confidence 01112222223322211 1245566776 8999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 046850 659 GSLKARRKADALLRLLN 675 (686)
Q Consensus 659 ~~~~~k~~A~~lL~~l~ 675 (686)
.++.+|+++..+|.+++
T Consensus 724 ~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 724 DSLIVREKIGTALENLR 740 (743)
T ss_pred CcHHHHHHHHHHHHhhh
Confidence 99999999999999886
No 131
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.80 E-value=0.00052 Score=73.16 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=44.2
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHhh----CCCCCCCCCccccCC
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS----GHHTCPKSGQRLIHM 331 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~----~~~~CP~c~~~l~~~ 331 (686)
..+..|.+|.+.-.||+...|.|+|||.||..+... .+.+||.|...+...
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 456789999999999999999999999999988875 357999999887644
No 132
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.79 E-value=0.072 Score=56.92 Aligned_cols=182 Identities=30% Similarity=0.333 Sum_probs=127.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHh
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMI 515 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 515 (686)
..++.++.++.+++..++..|...+..+. ..-+++.+..++.+. +..+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~---------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDE-DPRVRDAAADALGEL---------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHcc----------
Confidence 46788999999999999999998865553 235799999999999 889999999977655
Q ss_pred hcCCCcHHHHHHhcc-cCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchh------------HHHHH
Q 046850 516 GGRPRAIPALVGLLR-EGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGI------------TDDAL 582 (686)
Q Consensus 516 ~~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v------------~~~al 582 (686)
+. ...++.|+.++. +++..++..|.++|..+-... ++.+++..+.+..... +..+.
T Consensus 102 ~~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 102 GD-PEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred CC-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 33 568999999998 578899999999999885543 3777888886654222 22222
Q ss_pred HHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHH
Q 046850 583 AVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLK 662 (686)
Q Consensus 583 ~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~ 662 (686)
..|..+ ..... ++.+.+.++.....++..|...|..+.... ..+.+.+...+.+.+..
T Consensus 171 ~~l~~~----------~~~~~-~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 171 EALGEL----------GDPEA-IPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHc----------CChhh-hHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcCCCHH
Confidence 222222 12223 788888888888889999999988887663 11234444555555555
Q ss_pred HHHHHHHHH
Q 046850 663 ARRKADALL 671 (686)
Q Consensus 663 ~k~~A~~lL 671 (686)
+|.++...|
T Consensus 229 vr~~~~~~l 237 (335)
T COG1413 229 VRKAALLAL 237 (335)
T ss_pred HHHHHHHHh
Confidence 554444433
No 133
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.72 E-value=0.035 Score=61.10 Aligned_cols=239 Identities=15% Similarity=0.135 Sum_probs=151.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccccc---HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN---KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~---k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
.|..++++|+++.+.+++.|+.....|+.--.+ -..+...|.+ |.+-|... .+|+.-....++..+......+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-YPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhcccc
Confidence 355677889999999999999998888753332 2222233322 44555555 77888777777777755544332
Q ss_pred HhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHc-CcHHHHHHHhcCCCchhHHHHHHHHHHHhC--
Q 046850 514 MIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVA-GAVPLLIELLMDDKAGITDDALAVLALLLG-- 590 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~-G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-- 590 (686)
.---..|.+|.|...|++....+..+.+..+..+|.+.+...-..+- .+-=-|+.+|.+.+..++..|...++.++.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 22222789999999999999999999999999999876642111110 122236667777788898888888887764
Q ss_pred Chhc-------------HH---------H-HHhCCC---ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHc
Q 046850 591 CREG-------------LE---------E-IRKCRV---LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLI 644 (686)
Q Consensus 591 ~~~~-------------~~---------~-i~~~~~---~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~ 644 (686)
.|.. |+ . +.+..+ .+|.|+.=-+.....++.-.+.+++-+-..-++.....+..
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~ 841 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYS 841 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11 0 111111 03444333333444566666666666655444444444433
Q ss_pred CCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhccccC
Q 046850 645 NPRSIPSLQSLTTDGSLKARRKADALLRLLNRCCSQS 681 (686)
Q Consensus 645 ~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~ 681 (686)
+.|.|-.-+.+.++.-|+-|..+++++.-.+++.
T Consensus 842 ---itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt 875 (975)
T COG5181 842 ---ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT 875 (975)
T ss_pred ---hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence 4677777888889999999999999987666554
No 134
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.68 E-value=0.0031 Score=44.42 Aligned_cols=39 Identities=36% Similarity=0.378 Sum_probs=35.1
Q ss_pred hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 510 DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 510 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
+++..+.. .|+++.|++++.++++++++.|+++|.||+.
T Consensus 3 ~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 46777778 9999999999999899999999999999973
No 135
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.66 E-value=0.11 Score=57.09 Aligned_cols=252 Identities=19% Similarity=0.181 Sum_probs=133.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHH--
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI-- 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~-- 471 (686)
...++|-..|++...-++.++++.+..++..+.. ..+. ...|..|-.+|++.....+-.|+++|..|+.-.+.+.
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence 3456777777777788999999999998875521 1222 2357788889999999999999999999885433322
Q ss_pred ------HHH-hc---CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHH
Q 046850 472 ------LIM-AA---GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAA 541 (686)
Q Consensus 472 ------~i~-~~---g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al 541 (686)
.++ .. -..-.+..+|+.| +.+....-+..+-++ ++=++++= +.-+.
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sf--------------------vhD~SD~F---KiI~i 396 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSF--------------------VHDMSDGF---KIIAI 396 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHH--------------------HHhhccCc---eEEeH
Confidence 222 11 1223344555555 444333333333222 22222111 11112
Q ss_pred HHHHHhcCCCCcH---------HHHHHcCc-------HHHHHHHhcCCCchhHHHHHHHHHHHhC---ChhcHHHH----
Q 046850 542 TALFNLAVYNANK---------ASVVVAGA-------VPLLIELLMDDKAGITDDALAVLALLLG---CREGLEEI---- 598 (686)
Q Consensus 542 ~aL~nLs~~~~~~---------~~iv~~G~-------v~~Ll~lL~~~~~~v~~~al~~L~nLa~---~~~~~~~i---- 598 (686)
.|+..||..-+.+ ..+.+.|+ +.++..++ +..+..++.|+..|+..-. .++-...|
T Consensus 397 da~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~-~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iL 475 (898)
T COG5240 397 DALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAM-ENDPDSKERALEVLCTFIEDCEYHQITVRILGIL 475 (898)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-hhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 2222222111100 11122232 22222222 1344566666555544422 22211111
Q ss_pred HhCCC-------ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 046850 599 RKCRV-------LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALL 671 (686)
Q Consensus 599 ~~~~~-------~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 671 (686)
.+.|- .+..+..-+--.+.-+|..|+.+|..++-+........ .+...|.+.+.+.++.+|..|..+|
T Consensus 476 G~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~-----sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 476 GREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ-----SVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred cccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH-----HHHHHHHHHhhcccHHHHHHHHHHH
Confidence 11110 12223221111466788899999988877653322222 2356777888888999999999999
Q ss_pred HHHHhcc
Q 046850 672 RLLNRCC 678 (686)
Q Consensus 672 ~~l~~~~ 678 (686)
+.|+..+
T Consensus 551 ~~~~~~d 557 (898)
T COG5240 551 RNMRLSD 557 (898)
T ss_pred Hhhhhhh
Confidence 9998653
No 136
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.62 Score=53.40 Aligned_cols=268 Identities=15% Similarity=0.127 Sum_probs=151.8
Q ss_pred hHHHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc
Q 046850 388 AADAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD 467 (686)
Q Consensus 388 ~~~~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~ 467 (686)
+.|..+...+.+.+.|+..++.++++|+-+...+-...++--..+ ++..-++|.+.+..+...++..+..++...
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence 345556677888889999999999999888877776566544433 344555665556555555555555544331
Q ss_pred cc-HHHHHhcCcHHHHHH---------------------------------HHcCCCCHHHHHHHHHHHHHhccCchhhh
Q 046850 468 NN-KILIMAAGAIDSIIE---------------------------------VLQSGKTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 468 ~~-k~~i~~~g~l~~Lv~---------------------------------lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
.. -...-+ .++.++. +|..+ +.++.+.+.-+|..++.+.+.-.
T Consensus 211 ~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvatntdssk 287 (866)
T KOG1062|consen 211 PDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVATNTDSSK 287 (866)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhcccccc
Confidence 11 111111 2333333 33344 44444444444444444332222
Q ss_pred HhhcC--CCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCc-HHHH--------HH--cCcH----HHHHHHhcCCCch
Q 046850 514 MIGGR--PRAIPALVGLLREGTTAGKKDAATALFNLAVYNAN-KASV--------VV--AGAV----PLLIELLMDDKAG 576 (686)
Q Consensus 514 ~i~~~--~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~-~~~i--------v~--~G~v----~~Ll~lL~~~~~~ 576 (686)
..+.. ..++..+..+. .+...+..|+.+|.....++++ ...+ +. ..++ ..++.+|.+++..
T Consensus 288 N~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~S 365 (866)
T KOG1062|consen 288 NAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVS 365 (866)
T ss_pred cchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHH
Confidence 22110 01333333332 3457777888888877776663 2211 11 1222 3467777777888
Q ss_pred hHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHH
Q 046850 577 ITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLT 656 (686)
Q Consensus 577 v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 656 (686)
++..|+..+..|.....-+. ++..|+++|.+.++..|..++.-+..++..-.+ ...+. +..+..++
T Consensus 366 IkrralELs~~lvn~~Nv~~-------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP---~k~W~----idtml~Vl 431 (866)
T KOG1062|consen 366 IKRRALELSYALVNESNVRV-------MVKELLEFLESSDEDFKADIASKIAELAEKFAP---DKRWH----IDTMLKVL 431 (866)
T ss_pred HHHHHHHHHHHHhccccHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC---cchhH----HHHHHHHH
Confidence 88888877777765332222 256677788777888888887777777754333 22222 77778877
Q ss_pred hcCCHHHH-HHHHHHHHHHHhccc
Q 046850 657 TDGSLKAR-RKADALLRLLNRCCS 679 (686)
Q Consensus 657 ~~~~~~~k-~~A~~lL~~l~~~~~ 679 (686)
.....-++ .....+++++.+..+
T Consensus 432 ~~aG~~V~~dv~~nll~LIa~~~~ 455 (866)
T KOG1062|consen 432 KTAGDFVNDDVVNNLLRLIANAFQ 455 (866)
T ss_pred HhcccccchhhHHHHHHHHhcCCc
Confidence 76655555 445667887766533
No 137
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.50 E-value=0.14 Score=50.69 Aligned_cols=178 Identities=15% Similarity=0.060 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-----hHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHH
Q 046850 495 RENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-----TAGKKDAATALFNLAVYNA--NKASVVVAGAVPLLI 567 (686)
Q Consensus 495 ~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll 567 (686)
..+|...|..++++++.+..+.. ...--.|..+|...+ .-.+..+++.+..|..+++ ....+...++||..+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 56788888889999999988877 555555556664432 4678889999999998776 456677899999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCC----C---ChHHHHH-HHhcCChHHHHHHHHHHHHhhccChHHHH
Q 046850 568 ELLMDDKAGITDDALAVLALLLGCREGLEEIRKCR----V---LVPLLID-LLRFGSAKGKENSITLLLGLCKDGGEEVA 639 (686)
Q Consensus 568 ~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~----~---~i~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~~~~~~~ 639 (686)
+.+..++..-+..|..++..+-.++.|-.-+.+.- + .+..++. +.+.++++.-.+++.+..+|+.+ +..+
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn--prar 252 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN--PRAR 252 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--HHHH
Confidence 99998888889999999999988888866554432 1 1233333 44458999999999999999987 6666
Q ss_pred HHHHcC--CCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 640 RRLLIN--PRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 640 ~~l~~~--~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
..+... .++-..-...+-..++..|+--+.+++++.
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 666541 112222223334456667766666666653
No 138
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0031 Score=73.43 Aligned_cols=75 Identities=33% Similarity=0.516 Sum_probs=68.6
Q ss_pred CCCCCCCCcccccCcccCcCceEcc-CcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCC
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVA-SGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNN 351 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~-cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 351 (686)
++.+.|++|.-|+...+|+|||+++ .|++.||+-|.+++-. ..+-|.||.+|....+.||..++.-|+.|..+.+
T Consensus 863 ~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 863 ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 4667999999999999999999997 9999999999999886 6778999999999999999999999999977643
No 139
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.42 E-value=0.0046 Score=46.99 Aligned_cols=55 Identities=29% Similarity=0.178 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 492 MEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 492 ~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
+.+|..|+++|.+++........-.. ..+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36899999999998876644433333 66999999999999999999999999875
No 140
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.41 E-value=0.051 Score=62.72 Aligned_cols=274 Identities=14% Similarity=0.152 Sum_probs=155.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcC
Q 046850 398 FLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAG 477 (686)
Q Consensus 398 ~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g 477 (686)
.|++.+.+.|-+.+.-|+.-|..-...+.-+-..=-+..++..++++|...+.++|..|+.+|+-|+.. -++.-++ .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke~~le-~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKEDQLE-T 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chHHHHH-H
Confidence 677888888888888887777543332222211122345788899999999999999999999988731 1111111 1
Q ss_pred cHHHHHHHHcCCCCHHHHHHHH-HHHHHhccCchhhhHhhcCCCcHHHHHHhcccC------ChHHHHHHHHHHHHhcCC
Q 046850 478 AIDSIIEVLQSGKTMEARENAA-ATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG------TTAGKKDAATALFNLAVY 550 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa-~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~Al~aL~nLs~~ 550 (686)
.++.|+.-+-+| ....|..+. +.....+........... ..+.+.+...|..+ ...++-.++..+.-+-..
T Consensus 86 ~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 86 IVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 233333333334 333343322 222222222222222222 33444444444332 234666677666644332
Q ss_pred -CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHH
Q 046850 551 -NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLL 628 (686)
Q Consensus 551 -~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~ 628 (686)
...-.. ...+....++.-|..+...++.+|+.+|+.|+..-. +.... +. +..|.+=|.. ..+.....-+.+|.
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~--~l-i~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV--EL-IEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH--HH-HHHHHhccCCCCchHHHHHHHHHHH
Confidence 211111 234455566666677888899999999999986221 11111 11 3333332222 33444455566777
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHH---hcCCHHHHHHHHHHHHHHHhccccCCCC
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLT---TDGSLKARRKADALLRLLNRCCSQSHNP 684 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~~~~~~~k~~A~~lL~~l~~~~~~~~~~ 684 (686)
.+|+..+...-..+ ..++|.+.... ...+++.|++....+..+-..++..-.|
T Consensus 239 ~i~r~ag~r~~~h~---~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p 294 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHL---DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILP 294 (1233)
T ss_pred HHHHHhcchhhccc---chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcc
Confidence 88877655443333 33688888888 6778899999999888888777765444
No 141
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.78 Score=53.89 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHH----hCCHHHHHHhhcC-CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHH
Q 046850 410 IQSQAAYELRLLAKTGMDNRRIIAE----AGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIE 484 (686)
Q Consensus 410 ~q~~al~~L~~La~~~~~~r~~i~~----~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~ 484 (686)
-..-++.+|+++.+.+++-...+.. -|..+.+..+|.+ +++.++.-|+.++.-+..+.+-...|++.|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 3456889999998888855444433 3677888887765 7889999999999988888777888999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-CChHHHHHHHHHHHHhcC
Q 046850 485 VLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-GTTAGKKDAATALFNLAV 549 (686)
Q Consensus 485 lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~ 549 (686)
+|.+. +..|+.+..+|..|+++.+....-.. .|++..+.+++-. ..+..+..|+..|..|..
T Consensus 1821 lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1821 LLHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 99885 46789999999999999887666666 7777777777644 456778888888887753
No 142
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.82 Score=51.84 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=151.0
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc-ccHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKI 471 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~ 471 (686)
+...+.++.+|++.-+.++.+|+-.+..+.-.-++.-. -.+|.|++-|..+|+.++..|+.+++.|+.-+ .|.-
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 45667888999999999999999988776654444322 25799999999999999999999999998643 3322
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCCh-HHHHHHHHHHH--Hhc
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTT-AGKKDAATALF--NLA 548 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~Al~aL~--nLs 548 (686)
. .-|.+.++|-+..+-=+.........+|+..+. .++ ...+++|.+++.+... .+...++.++. +++
T Consensus 218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg--KKLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG--KKLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh--hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 1 235566666654333345566677777766532 333 3478899999877543 45555555443 444
Q ss_pred CCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHH
Q 046850 549 VYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLL 627 (686)
Q Consensus 549 ~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L 627 (686)
...++....++. +++.|-.++.+.++.++--++-++..++. ++...++ + -..+++.|...++.+|-.|+..|
T Consensus 288 ~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa---~---kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 288 SGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA---H---KDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred cCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH---h---HHHHHHHhccCCchhHHHHHHHH
Confidence 444344443332 45666667778889999989999998886 4443222 1 25677888888999999999999
Q ss_pred HHhhcc
Q 046850 628 LGLCKD 633 (686)
Q Consensus 628 ~~L~~~ 633 (686)
..+...
T Consensus 361 ~gmVsk 366 (877)
T KOG1059|consen 361 YGMVSK 366 (877)
T ss_pred HHHhhh
Confidence 988865
No 143
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0024 Score=63.91 Aligned_cols=46 Identities=15% Similarity=0.498 Sum_probs=38.3
Q ss_pred cccccCcccCc--Cce-EccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 284 FRCPISLDLMR--DPV-IVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 284 ~~Cpic~~~m~--dPv-~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
-.|.||++-+. |-+ +++|.|.|-+.|+.+|+..-...||+|+..++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 57999998663 444 56999999999999999865778999998775
No 144
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.024 Score=62.96 Aligned_cols=225 Identities=16% Similarity=0.103 Sum_probs=150.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc------ccc
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSI------FDN 468 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~------~~~ 468 (686)
.+.-|+....+++..++..|+..|..|..+..-.+. .....++.++.++..++..|+.++...+. ..+
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 344477778888999999999999888764332222 34567889999999999999776654432 112
Q ss_pred c-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-------hh----------------------------
Q 046850 469 N-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-------CK---------------------------- 512 (686)
Q Consensus 469 ~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-------~~---------------------------- 512 (686)
+ ..++.. .++..++..+.+. +..+|..|+.+|+.+...++ .|
T Consensus 273 ~~e~kl~D-~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 273 SEEEKLKD-AAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhhhhhHH-HHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 2 233333 3788888888887 77778778777776543221 01
Q ss_pred ----------------hHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCc
Q 046850 513 ----------------VMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKA 575 (686)
Q Consensus 513 ----------------~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~ 575 (686)
..|.. .|+=-++|+-|.+.--++++.|+..++.|+...+ .... ++.-|+.++.+...
T Consensus 351 k~~~advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIE 424 (823)
T ss_pred ccccccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHH
Confidence 11222 3344455555555556899999999999998765 3333 46789999999989
Q ss_pred hhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHH
Q 046850 576 GITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVAR 640 (686)
Q Consensus 576 ~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 640 (686)
.++..|+.+|..|+.+-. ++..- ++.+.+-|...++++++..-.+|.+ |.-.+.++..
T Consensus 425 ~VRL~ai~aL~~Is~~l~-----i~eeq-l~~il~~L~D~s~dvRe~l~elL~~-~~~~d~~~i~ 482 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHLA-----IREEQ-LRQILESLEDRSVDVREALRELLKN-ARVSDLECID 482 (823)
T ss_pred HHHHHHHHHHHHHHHHhe-----ecHHH-HHHHHHHHHhcCHHHHHHHHHHHHh-cCCCcHHHHH
Confidence 999999999999987522 22233 6778888888888888877666543 3333344433
No 145
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.32 E-value=0.15 Score=52.29 Aligned_cols=222 Identities=15% Similarity=0.067 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHH-HHhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccccccHHHHHhc-CcHHHH
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRII-AEAGAIPFLVTLLSS--HDPRIQENAVTALLNLSIFDNNKILIMAA-GAIDSI 482 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~-g~l~~L 482 (686)
++-.+.-|+.++.+++. .++.|..+ ++...-..+++++++ ++.++|-+.+-+++-|+.+..-...|-+. +.+..+
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44567788899999988 56666554 344455678888876 57889999999999998876655333332 568888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhcccC---ChHHHHHHHHH----------H---
Q 046850 483 IEVLQSGKTMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLLREG---TTAGKKDAATA----------L--- 544 (686)
Q Consensus 483 v~lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~Al~a----------L--- 544 (686)
+++.+......+...+++++.|++.-. ..-..+.. .|-+.+.+++|..+ +.+++.+.-.. |
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 888888767778889999999998732 23333344 44455556666432 22222211110 0
Q ss_pred ----HHh-----cCC---------CCcHHHHHHc--CcHHHHHHHhcCCCch-hHHHHHHHHHHHh-CChhcHHHHHhCC
Q 046850 545 ----FNL-----AVY---------NANKASVVVA--GAVPLLIELLMDDKAG-ITDDALAVLALLL-GCREGLEEIRKCR 602 (686)
Q Consensus 545 ----~nL-----s~~---------~~~~~~iv~~--G~v~~Ll~lL~~~~~~-v~~~al~~L~nLa-~~~~~~~~i~~~~ 602 (686)
.-| +-. +.|...+.+. .++..|.++|....+. ....|+.=+..+. ..|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 001 111 2245556554 4688899999765444 4444555555554 4899999999999
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 603 VLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 603 ~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
+ =..+++++.+.++++|-+|+.++..+.
T Consensus 400 ~-k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 V-KEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred h-HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9 899999999999999999999876554
No 146
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.30 E-value=0.12 Score=51.07 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-----CCHHHHHHHHHHhhcccccccc--HHHHHhcCcHHHH
Q 046850 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-----HDPRIQENAVTALLNLSIFDNN--KILIMAAGAIDSI 482 (686)
Q Consensus 410 ~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~L 482 (686)
-...|+..|.-++. +++.|..+.++..--.|-.+|.. ++.-.+..++.+++.|...++. -..+...+++|..
T Consensus 95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 34566777777776 78999999998765555566653 4567889999999999887655 4455678999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhh-------hHhhcCCCcHHHHH-HhcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 483 IEVLQSGKTMEARENAAATIFSLSMIDDCK-------VMIGGRPRAIPALV-GLLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 483 v~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~-------~~i~~~~g~i~~Lv-~lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
++.+..| ++..+..|+.++..+-.+|..- +.+......+..++ .+.+.++++..+.++.+..+|+.++..|
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999 9999999999999988777322 22222122333333 3445678899999999999999988666
Q ss_pred HHH
Q 046850 555 ASV 557 (686)
Q Consensus 555 ~~i 557 (686)
..+
T Consensus 253 ~aL 255 (293)
T KOG3036|consen 253 AAL 255 (293)
T ss_pred HHH
Confidence 554
No 147
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0028 Score=65.05 Aligned_cols=46 Identities=24% Similarity=0.622 Sum_probs=38.9
Q ss_pred CCcccccCcccC-cC------------ceEccCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 282 DEFRCPISLDLM-RD------------PVIVASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 282 ~~~~Cpic~~~m-~d------------Pv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
.+-.|.||++-| .. |--++|||.+--+|+..|++. .-+||.|+.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 466999999864 33 367799999999999999987 88999999984
No 148
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.26 E-value=0.15 Score=57.51 Aligned_cols=235 Identities=16% Similarity=0.140 Sum_probs=148.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccccccH---HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK---ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM 514 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k---~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~ 514 (686)
+..++..|++..+.++..|+..+..++.--.++ ..+...|++ |.+-|... .+|+.-....++..+.....-...
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcccccc
Confidence 344557788899999999999998887543332 222233432 45566666 778887777777776544432222
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHc-CcHHHHHHHhcCCCchhHHHHHHHHHHHhC--C
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVA-GAVPLLIELLMDDKAGITDDALAVLALLLG--C 591 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~-G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~--~ 591 (686)
.--..+.+|.|..+|++....++++++..+..++...+...-..+- .+-=-|+.+|...+..++..|...++.++. .
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 2223789999999999999999999999999999766531111110 122236677777788888888888888764 2
Q ss_pred hhcH-------------H---------HH-HhCCC---ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcC
Q 046850 592 REGL-------------E---------EI-RKCRV---LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLIN 645 (686)
Q Consensus 592 ~~~~-------------~---------~i-~~~~~---~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 645 (686)
|... + +| .+..+ .+|.|+.=-+.....++.-.+..|+-+-..-++-....+..
T Consensus 958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya- 1036 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA- 1036 (1172)
T ss_pred HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH-
Confidence 2110 0 11 12221 14444443344555567666666666655443433344332
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 646 PRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 646 ~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+.|.|-.-+.+.+..-|+-|..++++|.--.
T Consensus 1037 --v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1037 --VTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred --hhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 5777777888888888999999999886543
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.23 E-value=0.0025 Score=67.32 Aligned_cols=50 Identities=16% Similarity=0.462 Sum_probs=39.9
Q ss_pred CCCCCCCcccccCcccCcCce----EccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 277 LPNIPDEFRCPISLDLMRDPV----IVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv----~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
+..+-+--+||+|++-|.+-+ ++.|.|+|--.|+.+|+ ..+||+||.-..
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcC
Confidence 334456669999999998766 45899999999999997 468999986543
No 150
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.21 E-value=0.097 Score=60.56 Aligned_cols=232 Identities=17% Similarity=0.102 Sum_probs=130.8
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHH-hhcCCCHHHH-HHHH---HHhhccccc
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVT-LLSSHDPRIQ-ENAV---TALLNLSIF 466 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~~~-~~A~---~aL~nLs~~ 466 (686)
.+..++.+++.|...+.|+|..|+++|.-++..-.+.+..- .+..|.. +++.. ...+ ..++ +.+.|+.-
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~k-eq~rdissi~Lktvi~nl~P- 118 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGK-EQLRDISSIGLKTVIANLPP- 118 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccch-hhhccHHHHHHHHHHhcCCC-
Confidence 44678899999999999999999999999986444333211 2233332 23222 2111 1222 23344442
Q ss_pred cccHHHHHhcCcHHHHHHHHcCCC-----CHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHH
Q 046850 467 DNNKILIMAAGAIDSIIEVLQSGK-----TMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDA 540 (686)
Q Consensus 467 ~~~k~~i~~~g~l~~Lv~lL~~~~-----~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A 540 (686)
.........+++.+...|..+. ...++..++-++..+-..- +.-.. .. .+.+..++.-+.+....+++.|
T Consensus 119 --~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh-~~il~~l~~ql~s~R~aVrKka 194 (1233)
T KOG1824|consen 119 --SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FH-LSILKCLLPQLQSPRLAVRKKA 194 (1233)
T ss_pred --ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hH-HHHHHHHhhcccChHHHHHHHH
Confidence 2222334445555555554431 2224444444444432211 11111 22 3455566666666667899999
Q ss_pred HHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC-CchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHH---hcCC
Q 046850 541 ATALFNLAVYNANKASVVVAGAVPLLIELLMDD-KAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLL---RFGS 616 (686)
Q Consensus 541 l~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~-~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL---~~~s 616 (686)
+.+|..|+....+ .+-.+++..|++-|... ......--..+|+.+|+....|..- ..+..+|.+.++. ...+
T Consensus 195 i~~l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~d 270 (1233)
T KOG1824|consen 195 ITALGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS-HLDKIVPLVADYCNKIEEDD 270 (1233)
T ss_pred HHHHHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc-ccchhhHHHHHHhcccccCc
Confidence 9999999986532 22234566666666443 3344444566777776533322211 1122278888888 5578
Q ss_pred hHHHHHHHHHHHHhhccChHH
Q 046850 617 AKGKENSITLLLGLCKDGGEE 637 (686)
Q Consensus 617 ~~~ke~A~~~L~~L~~~~~~~ 637 (686)
++.+|+++.++-.+-...+.+
T Consensus 271 DELrE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 271 DELREYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHHHHHHHHhChhh
Confidence 889999999988887665433
No 151
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.07 E-value=0.17 Score=51.91 Aligned_cols=232 Identities=15% Similarity=0.099 Sum_probs=153.4
Q ss_pred HhhcCCCHHHHHHHHHHhhccccccccHHHHH-hcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhhhHhhcCCC
Q 046850 443 TLLSSHDPRIQENAVTALLNLSIFDNNKILIM-AAGAIDSIIEVLQSGK-TMEARENAAATIFSLSMIDDCKVMIGGRPR 520 (686)
Q Consensus 443 ~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~-~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g 520 (686)
++++.=++-++-.|+.+|.++....+.|..+- +...-..++..+++.. ..+.+.+..-+++-|+..++....+-....
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44444556678889999999998877755544 4456677888888743 578999999999999999887755544345
Q ss_pred cHHHHHHhcccCC-hHHHHHHHHHHHHhcCCC--CcHHHHHHcCcHHHHHHHhcC---CCchhHHHHHHHHH-------H
Q 046850 521 AIPALVGLLREGT-TAGKKDAATALFNLAVYN--ANKASVVVAGAVPLLIELLMD---DKAGITDDALAVLA-------L 587 (686)
Q Consensus 521 ~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~--~~~~~iv~~G~v~~Ll~lL~~---~~~~v~~~al~~L~-------n 587 (686)
.|.-|+.+.+... ..+.+.+++.+.|++... +....+.-.|-+.+-++.|.. .+.+++...-.+=. .
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 7778888877653 478888999999999844 345555556655566666633 13333221111111 1
Q ss_pred HhC---------------Ch---------hcHHHHHhCC-CChHHHHHHHhcCChH-HHHHHHHHHHHhhccChHHHHHH
Q 046850 588 LLG---------------CR---------EGLEEIRKCR-VLVPLLIDLLRFGSAK-GKENSITLLLGLCKDGGEEVARR 641 (686)
Q Consensus 588 La~---------------~~---------~~~~~i~~~~-~~i~~Lv~lL~~~s~~-~ke~A~~~L~~L~~~~~~~~~~~ 641 (686)
||. +| .+...+.+.+ ..+..|.++++...+. .-.-|+.=+..+.+.. ++....
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~v 394 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAV 394 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHH
Confidence 111 11 1122222222 1267778888875554 3334555556666655 667777
Q ss_pred HHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 642 LLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 642 l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+.+ .|+-..++.|+...++++|-.|..+++.+-.
T Consensus 395 l~K-yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 395 LSK-YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHH-hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 777 9999999999999999999999998887643
No 152
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.03 Score=62.20 Aligned_cols=212 Identities=19% Similarity=0.191 Sum_probs=139.6
Q ss_pred HHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--------hhh
Q 046850 441 LVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID--------DCK 512 (686)
Q Consensus 441 Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--------~~~ 512 (686)
|..+....|..++.+|+..|+.|+..-.- .+-.....++.+++. ...+|..|..+++-.+... +.+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-----~~~~Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-----SKACYSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-----cHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 77777888999999999999988752111 112345567888887 7788888866665543221 122
Q ss_pred hHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC----------------------------------------
Q 046850 513 VMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA---------------------------------------- 552 (686)
Q Consensus 513 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~---------------------------------------- 552 (686)
... ..++..+.+.+.+.+..++..|+.+|+.+-...+
T Consensus 277 kl~---D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 277 KLK---DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhH---HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 222 3467777788887777777777777665532111
Q ss_pred -----------cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHH
Q 046850 553 -----------NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKE 621 (686)
Q Consensus 553 -----------~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke 621 (686)
.-..++.+|+-.+++.-|.++-.++++.|+..+..|+.+..+-.. .. +..|+.++...-..++.
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~----~a-ldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV----RA-LDFLVDMFNDEIEVVRL 428 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH----HH-HHHHHHHhccHHHHHHH
Confidence 112244455666677777766678999999999999874332111 23 78899999877888999
Q ss_pred HHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 622 NSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 622 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
.|+..|..++.+.. +. ...++.+..-+.+.++.+|+.+..+|+..
T Consensus 429 ~ai~aL~~Is~~l~------i~--eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 429 KAIFALTMISVHLA------IR--EEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHhe------ec--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999998887621 11 11266666667777777777666666554
No 153
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.96 E-value=0.31 Score=56.53 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=64.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG 517 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~ 517 (686)
+..+.+=+.++|+.+|..|+++|..+=. ..+ -..+++++.+++.++ +..+|..|+-+++++-..+ +..+.+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~-----~el-~~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRV-----KEL-LGNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCh-----HHH-HHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 4444455556777777777777766621 112 223567777777777 7777777777777775443 222233
Q ss_pred CCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 518 RPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 518 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
.|.+..+..++.+.+|.++.+|+.+|..+..
T Consensus 165 -~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 165 -LGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 5667777777777777777777777776643
No 154
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.91 E-value=0.016 Score=43.93 Aligned_cols=55 Identities=24% Similarity=0.186 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 046850 450 PRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSL 505 (686)
Q Consensus 450 ~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~L 505 (686)
+.++..|+++|++++........-....+++.|+.+|+++ +..+|.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4688999999999887666644445667899999999988 889999999999875
No 155
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.22 Score=58.36 Aligned_cols=202 Identities=18% Similarity=0.123 Sum_probs=145.0
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccCchhhhHhhcCCCcHHHHHHhcccC---ChHHHHHHHHHHH
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSL-SMIDDCKVMIGGRPRAIPALVGLLREG---TTAGKKDAATALF 545 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~Al~aL~ 545 (686)
...-..-|++|.++++|++. ..|.|..-+-+=..+ +.++..+..++. .++-..++..|..+ +++-+..|+-.|.
T Consensus 505 V~LaLsVGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD~SCQ~dLvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLA 582 (1387)
T KOG1517|consen 505 VDLALSVGIFPYVLKLLQSS-ARELRPILVFIWAKILAVDPSCQADLVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLA 582 (1387)
T ss_pred hhhhhccchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcCchhHHHHHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHH
Confidence 33444679999999999999 778887666555554 556567777777 65566666666552 2477888999999
Q ss_pred HhcCCCC-cHHHHHHcCcHHHHHHHhcCC-CchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHH
Q 046850 546 NLAVYNA-NKASVVVAGAVPLLIELLMDD-KAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKEN 622 (686)
Q Consensus 546 nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~-~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~ 622 (686)
.++.+-. ......+.+.+...+..|.++ .+-++.=++.+|+.|=. +++.|-.=.+.++ ...|..+|....+++|-.
T Consensus 583 viv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A-hekL~~~LsD~vpEVRaA 661 (1387)
T KOG1517|consen 583 VIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA-HEKLILLLSDPVPEVRAA 661 (1387)
T ss_pred HHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH-HHHHHHHhcCccHHHHHH
Confidence 9998655 677778889999999989875 56667778888888854 5555554456677 899999999899999999
Q ss_pred HHHHHHHhhccC---hHHHHHHH---Hc-------CCCChH----HHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 623 SITLLLGLCKDG---GEEVARRL---LI-------NPRSIP----SLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 623 A~~~L~~L~~~~---~~~~~~~l---~~-------~~g~i~----~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
|+.+|..+..++ -++....+ +. ....+. .++.++++|++-+|+.....|..+
T Consensus 662 AVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 662 AVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999999998864 12221221 10 112233 677888999999988877666655
No 156
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.83 E-value=0.0034 Score=65.54 Aligned_cols=35 Identities=20% Similarity=0.554 Sum_probs=31.2
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHh
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWIN 315 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~ 315 (686)
++++.||||...+++|++++|||+.|+.|-.....
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999765544
No 157
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0076 Score=61.33 Aligned_cols=50 Identities=24% Similarity=0.465 Sum_probs=43.0
Q ss_pred CCCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 278 PNIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
+.+++.-.||+|..--.+|.++ .+|-.||..||-++..+ +..||+|+.+.
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~ 345 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPA 345 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcc
Confidence 3557788999999988888766 67999999999999996 89999998765
No 158
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=1.1 Score=51.57 Aligned_cols=227 Identities=17% Similarity=0.163 Sum_probs=137.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC---------------CCHHHHHHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS---------------HDPRIQENAVT 458 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s---------------~~~~~~~~A~~ 458 (686)
..++...+.|.+.+..+-..++..+..+++.++++-..+.+ .++-|+..|+. .||-+|...+.
T Consensus 179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 34555556777777777777777777777777666665554 56666666541 36678888888
Q ss_pred Hhhcccccccc-HHHHHh--------------cC---cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc---
Q 046850 459 ALLNLSIFDNN-KILIMA--------------AG---AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG--- 517 (686)
Q Consensus 459 aL~nLs~~~~~-k~~i~~--------------~g---~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~--- 517 (686)
.|.-|-.++.. .+.|-. .| ..+.+..++.-..+...|..|+.+|..+-.++++-.+.+.
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 87777666544 222211 01 1112222222222458899999999988777654443332
Q ss_pred -------CCCcH----HHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHH
Q 046850 518 -------RPRAI----PALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLA 586 (686)
Q Consensus 518 -------~~g~i----~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~ 586 (686)
...++ ..+++.|++.+..+++.|+..++.|...+ |...| +.-|+.+|...+...+..+..-+.
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~-Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES-NVRVM-----VKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc-cHHHH-----HHHHHHHHHhccHHHHHHHHHHHH
Confidence 01111 35667778888888888888888876543 44433 345777776667777777777777
Q ss_pred HHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 046850 587 LLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 587 nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 634 (686)
.++. ....+.. .+..+..++.....-++...+.-+..|..++
T Consensus 411 ~laEkfaP~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 411 ELAEKFAPDKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHhcCCcchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 7765 2211211 2667777776655556666666666665554
No 159
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.46 Score=54.12 Aligned_cols=273 Identities=15% Similarity=0.136 Sum_probs=167.3
Q ss_pred hhHHHHHHHhhcCCH-HHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcC--CCHHHHHHHHHHhhccccccc-
Q 046850 394 MTAEFLVGKLAMGSP-EIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSS--HDPRIQENAVTALLNLSIFDN- 468 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~-~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~- 468 (686)
+.+..|+........ ..+..++.+|..++.+ ......... +.++..++.-... ++..++-.|+.+|.|--....
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 355566665554433 4778888999888873 333333333 3455566653333 578899999999987432111
Q ss_pred cH-HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHH
Q 046850 469 NK-ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSM-IDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFN 546 (686)
Q Consensus 469 ~k-~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 546 (686)
|- ...-..-++..+++.=..+ +.+++..|...|..+.. +.+.-..... ...++.-+.-++++++++...|...=.+
T Consensus 208 nF~~E~ern~iMqvvcEatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl~amks~~deValQaiEFWst 285 (859)
T KOG1241|consen 208 NFNNEMERNYIMQVVCEATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITLAAMKSDNDEVALQAIEFWST 285 (859)
T ss_pred hhccHhhhceeeeeeeecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 1111112333344444555 88899999888888754 3344444444 4455555666778888888888887777
Q ss_pred hcCCC----------------C-cHHHHH--HcCcHHHHHHHhcC-------CCchhHHHHHHHHHHHhCChhcHHHHHh
Q 046850 547 LAVYN----------------A-NKASVV--VAGAVPLLIELLMD-------DKAGITDDALAVLALLLGCREGLEEIRK 600 (686)
Q Consensus 547 Ls~~~----------------~-~~~~iv--~~G~v~~Ll~lL~~-------~~~~v~~~al~~L~nLa~~~~~~~~i~~ 600 (686)
+|... + ++.... -.+++|.|+++|.. .+-.....|-.+|..++.. ..
T Consensus 286 iceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~ 358 (859)
T KOG1241|consen 286 ICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VG 358 (859)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hc
Confidence 76421 1 111111 13678888888843 1233445555666666542 12
Q ss_pred CCCChHHHHH----HHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 601 CRVLVPLLID----LLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 601 ~~~~i~~Lv~----lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
..- +|..+. -+++.+-+.++.|+-++..+-....+.....++ .+++|.++.+..+..-.+|.-++|.+-.+-+
T Consensus 359 D~I-v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 359 DDI-VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred ccc-hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 222 444444 444566678888888888888776666666665 5579999999997788889999998887766
Q ss_pred ccc
Q 046850 677 CCS 679 (686)
Q Consensus 677 ~~~ 679 (686)
+-+
T Consensus 436 ~l~ 438 (859)
T KOG1241|consen 436 FLP 438 (859)
T ss_pred hch
Confidence 543
No 160
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.72 E-value=0.16 Score=47.48 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=99.0
Q ss_pred HHHHhCCHHHHHHhhcCCC------HHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 046850 431 IIAEAGAIPFLVTLLSSHD------PRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGK-TMEARENAAATIF 503 (686)
Q Consensus 431 ~i~~~g~i~~Lv~lL~s~~------~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~ 503 (686)
.++..||+..|+.++.++. .++...+++++..|-.+............+..++..+.... +..+...|.++|-
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 5677889999999998755 47778899999988776544556667778899999988764 6788999999999
Q ss_pred HhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 504 SLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 504 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
++..++......+...=-++.|+..|...+++++.+|+..+-.|....+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999887755555436789999999999999999999999888876544
No 161
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=1.3 Score=53.13 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=132.1
Q ss_pred cCCCHHHHHHHHHHhhccccccccHHHHHh--cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhhhHhhcCCCc
Q 046850 446 SSHDPRIQENAVTALLNLSIFDNNKILIMA--AGAIDSIIEVLQSGKTMEARENAAATIFSLSMI--DDCKVMIGGRPRA 521 (686)
Q Consensus 446 ~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~--~~~~~~i~~~~g~ 521 (686)
++.+..+|..+-.+|..++........... ..+...+.+-+++- +..++.....+|..|-.. .+....+.. .
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIPK---L 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHHH---H
Confidence 445788999999999999876333222221 13445555555554 455565555555555332 244455433 5
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcC------cHHHHHHHhcCC--CchhHHHH--HHHHHHHhCC
Q 046850 522 IPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAG------AVPLLIELLMDD--KAGITDDA--LAVLALLLGC 591 (686)
Q Consensus 522 i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G------~v~~Ll~lL~~~--~~~v~~~a--l~~L~nLa~~ 591 (686)
|+-++-.+++.+...+..|..+|..++. .....+.| .+...+..+..+ .......| +-++..+..
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~- 814 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ- 814 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH-
Confidence 6666666687788889999999988873 11112222 344455544332 12222222 222223321
Q ss_pred hhcHHHHHhCCC---ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHH
Q 046850 592 REGLEEIRKCRV---LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKAD 668 (686)
Q Consensus 592 ~~~~~~i~~~~~---~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~ 668 (686)
....+++.+. ++..+..+|.++++.+...|++.+..++..-+..+.....+ -+++.+..++++.+-..|.+..
T Consensus 815 --e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~--~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 815 --EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE--ELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred --HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH--HHHHHHHHHHHhhhHHHHHHHH
Confidence 1112223232 14444556777899999999999999998876665555442 2699999999999999999999
Q ss_pred HHHHHHHh
Q 046850 669 ALLRLLNR 676 (686)
Q Consensus 669 ~lL~~l~~ 676 (686)
-+|..|-+
T Consensus 891 ~LlekLir 898 (1176)
T KOG1248|consen 891 LLLEKLIR 898 (1176)
T ss_pred HHHHHHHH
Confidence 88877644
No 162
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.0087 Score=58.27 Aligned_cols=53 Identities=19% Similarity=0.439 Sum_probs=45.4
Q ss_pred CCcccccCcccCcCce----EccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCC
Q 046850 282 DEFRCPISLDLMRDPV----IVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIP 335 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv----~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~ 335 (686)
..|.||+|.+.+.+.+ .-+|||.+|..|.++.+.. ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 6799999999998754 2299999999999999875 789999999998877654
No 163
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.0037 Score=45.92 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=38.3
Q ss_pred cccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCccc
Q 046850 284 FRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 284 ~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
-.|.||.+--.|.|+..|||. .|-.|=.+.++.++..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 469999999999988899995 688887777777899999998765
No 164
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=0.17 Score=57.65 Aligned_cols=269 Identities=17% Similarity=0.149 Sum_probs=150.0
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KI 471 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 471 (686)
+....-|.+.+++.++.++..|+-....+-. -+.......|.++.|-.++.+.++.+..+|+.+|..+.....+ -.
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 3566778889999999999998888877754 3456677789999999999999999999999999998765543 11
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.-+..-.+..++..+..- .-..-+.+|-.++.+-.... .+....+..+...|.+.+..+...+...+.++...-
T Consensus 197 ~~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNEC----TEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred ccccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 111112233333333332 22222333334433221111 010234556666677777777777777777777665
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-Chhc---------------------HHHH----HhCCCCh
Q 046850 552 ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREG---------------------LEEI----RKCRVLV 605 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~---------------------~~~i----~~~~~~i 605 (686)
......+-...-++|+.++.... .+.-.|++=+..+-. .|+- +-.+ ..... +
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n-l 348 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN-L 348 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH-H
Confidence 55444444455566666655443 333333222221111 1110 0000 00001 1
Q ss_pred HHHH----HHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 046850 606 PLLI----DLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCCSQ 680 (686)
Q Consensus 606 ~~Lv----~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~ 680 (686)
+.+. ++-...+.+.-..++.++.+++..-. + ..+.++.|+++++.+-..+.+.+...++.+-+.+++
T Consensus 349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e----~----~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAE----Q----SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh----h----hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 1111 11111344555566666666664321 1 145688888888877666666666677666665554
No 165
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.40 E-value=0.14 Score=49.84 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHhcCCCCcHHHHHHcC----------------cHHHHHHHhcC------CCchhHHHHHHHHHHHh
Q 046850 532 GTTAGKKDAATALFNLAVYNANKASVVVAG----------------AVPLLIELLMD------DKAGITDDALAVLALLL 589 (686)
Q Consensus 532 ~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G----------------~v~~Ll~lL~~------~~~~v~~~al~~L~nLa 589 (686)
.+......++..|.||+..+..+..+++.+ .+..|+.++.. ....-....+.+|.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 344566678999999999888777665432 46677777744 24456677899999999
Q ss_pred CChhcHHHHHhCCCC---hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcC--CCChHHHHHHHh
Q 046850 590 GCREGLEEIRKCRVL---VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLIN--PRSIPSLQSLTT 657 (686)
Q Consensus 590 ~~~~~~~~i~~~~~~---i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~--~g~i~~L~~Ll~ 657 (686)
..++||+.+++...+ +..|+.++.+.+..-|.-++++|.|+|... .....+... .+++|.|+.-+.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999887642 456666777678888899999999999874 344555553 367777766554
No 166
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.32 E-value=0.36 Score=48.71 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCcHHH-HHH-cCcHHHHHHHhcC-------CC--c---hhHHHHHHHHHHHhCChhcHHHH
Q 046850 533 TTAGKKDAATALFNLAVYNANKAS-VVV-AGAVPLLIELLMD-------DK--A---GITDDALAVLALLLGCREGLEEI 598 (686)
Q Consensus 533 ~~~~~~~Al~aL~nLs~~~~~~~~-iv~-~G~v~~Ll~lL~~-------~~--~---~v~~~al~~L~nLa~~~~~~~~i 598 (686)
+++.++.|+.-|..--..-++-.- +.. -|.+..|++=+.+ +. . .-+-.|+++|..+|.+|+.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 466677776666654443334433 333 4888888776522 11 1 23456788888889999999999
Q ss_pred HhCCCChHHHHHHHhcCC-----hHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 046850 599 RKCRVLVPLLIDLLRFGS-----AKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRL 673 (686)
Q Consensus 599 ~~~~~~i~~Lv~lL~~~s-----~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 673 (686)
+++.. .-.|..+|...+ +..|-.+.+++..|...++.++..-+.. ..++|..++.++.|++-.|.-|..+++-
T Consensus 88 l~a~i-plyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHI-PLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHTTG-GGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHcCc-hhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99987 556667776632 3477789999999999888899888888 8899999999999999999999988876
Q ss_pred HHhc
Q 046850 674 LNRC 677 (686)
Q Consensus 674 l~~~ 677 (686)
+-..
T Consensus 166 IL~d 169 (262)
T PF04078_consen 166 ILLD 169 (262)
T ss_dssp HHHS
T ss_pred HHcc
Confidence 6443
No 167
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.82 Score=52.17 Aligned_cols=244 Identities=14% Similarity=0.139 Sum_probs=146.5
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc--H
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN--K 470 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k 470 (686)
...++++-+.++++++.-+..|+.++..+..+....+..-...+++|.++.++..+..-++..+.|+|+.++..-.. -
T Consensus 363 ~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 363 PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc
Confidence 45677877899999999999999999888876666666666678999999999988888889999999999865442 1
Q ss_pred HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhhhH----hhc--CCCcHHHHHHhcc--cCC-hHHHHH
Q 046850 471 ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI--DDCKVM----IGG--RPRAIPALVGLLR--EGT-TAGKKD 539 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~--~~~~~~----i~~--~~g~i~~Lv~lL~--~~~-~~~~~~ 539 (686)
......+.+..++.-|.+ .+.+-.+++|++.+|+.. +..... ... -...|..|++.-. +++ ...+..
T Consensus 443 n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred cHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHH
Confidence 122223445555555554 457888999999999832 111111 111 0112233333222 122 478888
Q ss_pred HHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHh----c-----CC----CchhHHHHHHHHHHHhC-ChhcHHHHHhCCCC
Q 046850 540 AATALFNLAVYNA-NKASVVVAGAVPLLIELL----M-----DD----KAGITDDALAVLALLLG-CREGLEEIRKCRVL 604 (686)
Q Consensus 540 Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL----~-----~~----~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~ 604 (686)
|..||.-|..+.+ ..-.++ .+....++.-| . .. -..++..-+.+|..+-+ ....+..+.+ ..
T Consensus 521 AYeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~i- 597 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QI- 597 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HH-
Confidence 9999999988765 333322 23333333222 1 11 12344445555655532 1112222222 12
Q ss_pred hHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHH
Q 046850 605 VPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARR 641 (686)
Q Consensus 605 i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~ 641 (686)
...+.+++.+ .+..+.+.|..++..+..+-+....+.
T Consensus 598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ky 635 (859)
T KOG1241|consen 598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKY 635 (859)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHH
Confidence 4566777776 566677777777777776554444333
No 168
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.28 E-value=0.28 Score=56.87 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=82.9
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHH
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
..-.+..+.+.+.+.|+.+|--|++.+..+-- .+.+ ..+++++.+++.++++.++..|+-++.++- .-.+.
T Consensus 90 ~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~-----~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly--~ld~~ 160 (757)
T COG5096 90 ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV-----KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLY--RLDKD 160 (757)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-----HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHH--hcCHh
Confidence 33566777777888888888887777755532 1111 236788999999999999999999999884 35577
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~ 508 (686)
...+.|.+..+..++.+. ++.+..+|..+|..+-..
T Consensus 161 l~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 LYHELGLIDILKELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred hhhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence 888889999999999888 999999999999888543
No 169
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.24 E-value=0.17 Score=51.05 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCC-----HHHHHHHHHHhhcccccccc--HHHHHhcCcHHHHH
Q 046850 411 QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD-----PRIQENAVTALLNLSIFDNN--KILIMAAGAIDSII 483 (686)
Q Consensus 411 q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~-----~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv 483 (686)
...|+..|.-+|. +++.|..+.++...-.|..+|+..+ ..++-..+.+++.|.+.++. ...+.....+|..+
T Consensus 67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 4456777777787 7999999999998777888887543 45778888888888875544 55566789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccCchhhhHhh-------cCCCcHHHHHH-hcccCChHHHHHHHHHHHHhcCCCCcHH
Q 046850 484 EVLQSGKTMEARENAAATIFSLSMIDDCKVMIG-------GRPRAIPALVG-LLREGTTAGKKDAATALFNLAVYNANKA 555 (686)
Q Consensus 484 ~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~-------~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~~~~ 555 (686)
..+..| +.-.+..|+-++..+-.++..-..+. ....++..++. +...++++..+..+.+-..|+.++..+.
T Consensus 146 r~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~ 224 (262)
T PF04078_consen 146 RIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRARE 224 (262)
T ss_dssp HHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHH
Confidence 999999 99999999999999887774333332 21234444443 3356788999999999999999998777
Q ss_pred HHHH
Q 046850 556 SVVV 559 (686)
Q Consensus 556 ~iv~ 559 (686)
.+..
T Consensus 225 aL~~ 228 (262)
T PF04078_consen 225 ALRQ 228 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 170
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.15 E-value=0.75 Score=48.89 Aligned_cols=221 Identities=13% Similarity=0.063 Sum_probs=157.1
Q ss_pred HHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-H-----HHHHhc--CcHHHHHHHHcCCCCHHHHHHHHHHH
Q 046850 431 IIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-K-----ILIMAA--GAIDSIIEVLQSGKTMEARENAAATI 502 (686)
Q Consensus 431 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k-----~~i~~~--g~l~~Lv~lL~~~~~~e~~~~aa~~L 502 (686)
.+...|.++.|+..|..-+-+.+..++.+..++.....+ + ..+... .++..|+.-.. +.+.-..+-..|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence 344568889999999999999999999999998765322 2 223322 23333333333 446777888889
Q ss_pred HHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC-CcHHHHHHcC---cHHHHHHHhcCCCchhH
Q 046850 503 FSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN-ANKASVVVAG---AVPLLIELLMDDKAGIT 578 (686)
Q Consensus 503 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~~~~~iv~~G---~v~~Ll~lL~~~~~~v~ 578 (686)
.....++.....+.. ...+-.+.+.+..++-++..+|..++.-|-..+ ......+... .+...-.+|.+++--.+
T Consensus 148 Rec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 999888887777877 788899999999999999999999999866544 4555565543 46677778888888889
Q ss_pred HHHHHHHHHHhCChhcHHHHH---hCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccCh--HHHHHHHHcCCCChHHHH
Q 046850 579 DDALAVLALLLGCREGLEEIR---KCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGG--EEVARRLLINPRSIPSLQ 653 (686)
Q Consensus 579 ~~al~~L~nLa~~~~~~~~i~---~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--~~~~~~l~~~~g~i~~L~ 653 (686)
..++..|+.|-..+.+...+. .....+..++.+|++.+..++-.|..+.--+..+.. +.+...+.. . =..|+
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~-N--r~kLl 303 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK-N--REKLL 303 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH-T--HHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH-H--HHHHH
Confidence 999999999987777755443 333237888889999999999999999888887653 566666666 3 55666
Q ss_pred HHHhc
Q 046850 654 SLTTD 658 (686)
Q Consensus 654 ~Ll~~ 658 (686)
..+.+
T Consensus 304 ~fl~~ 308 (335)
T PF08569_consen 304 RFLKD 308 (335)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65543
No 171
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.032 Score=61.46 Aligned_cols=76 Identities=28% Similarity=0.428 Sum_probs=68.0
Q ss_pred CCCCCCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCC
Q 046850 275 SVLPNIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNN 351 (686)
Q Consensus 275 ~~~~~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 351 (686)
+.+.++|++|.-|+...+|+|||.+ .+|-+..|+-|.-++-. ..+-|.-|.++.-...+||..++.-|..+.+..+
T Consensus 846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 3577999999999999999999998 68899999999998876 6789999999999999999999999999976644
No 172
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.09 E-value=0.39 Score=53.29 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=71.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc----HHHH
Q 046850 398 FLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN----KILI 473 (686)
Q Consensus 398 ~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~----k~~i 473 (686)
.|.+.|....+++--..+.++..+........-.---.|.+|.|..+|++....++.+.+..++.++.+... |+.|
T Consensus 650 iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM 729 (975)
T COG5181 650 ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM 729 (975)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH
Confidence 344556666667655555555544431111111111258899999999999999999999999999877544 4443
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~ 508 (686)
- +-=.|++.|++- +.+.|.+|..++..+|..
T Consensus 730 R---IcfeLvd~Lks~-nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 730 R---ICFELVDSLKSW-NKEIRRNATETFGCISRA 760 (975)
T ss_pred H---HHHHHHHHHHHh-hHHHHHhhhhhhhhHHhh
Confidence 3 223467777777 889999999999888753
No 173
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.0056 Score=60.37 Aligned_cols=56 Identities=18% Similarity=0.385 Sum_probs=43.4
Q ss_pred CCCcccccCcccCcCce----------EccCcccccHHhHHHHHhhCC-CCCCCCCccccCCCCCCc
Q 046850 281 PDEFRCPISLDLMRDPV----------IVASGHTYDRNSIAQWINSGH-HTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv----------~~~cght~cr~ci~~w~~~~~-~~CP~c~~~l~~~~l~~n 336 (686)
.++-.|.+|.+-+.+.+ .++|+|.|--.||..|+--|. .+||.|.+.+....+..|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 35678999998776555 569999999999999998764 689999887654444333
No 174
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.65 Score=53.11 Aligned_cols=242 Identities=18% Similarity=0.111 Sum_probs=144.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
...+.+++.....|.+.++-.--.|.+.+...+.-.. +++..+++=..++++.++.-|++.++-+-. ..+
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----~~i 118 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCLRV-----DKI 118 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeEee-----hHH
Confidence 4566777778777877776666667777776554322 456677766677899999999998887754 222
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCc
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~ 553 (686)
.+ .++.++...++++ +..+|..++..+.++-.. +...... .|.++.|-+++.+.++.+..+|+.+|..+...+.+
T Consensus 119 ~e-y~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~--~~~~~~~-~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 119 TE-YLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDI--DPDLVED-SGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HH-HHHHHHHHhccCC-ChhHHHHHHHHHHHhhcC--Chhhccc-cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 22 3688899999999 888898888777776443 3344444 89999999999999999999999999999876653
Q ss_pred -HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhc--HHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 554 -KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREG--LEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 554 -~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~--~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
-...+....+..++..|..-+.--+ +.+|.+++.+... +.+. .. +..+...|.+.++.+.-.++.++..+
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~---~i-~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAE---DI-CERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHH---HH-HHHhhhhhccCCcceEeehHHHHHHH
Confidence 1111122223334443332111111 3344444431111 1110 01 23334445555555555666666665
Q ss_pred hccChHHHHHHHHcCCCChHHHHHHHhcCC
Q 046850 631 CKDGGEEVARRLLINPRSIPSLQSLTTDGS 660 (686)
Q Consensus 631 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~ 660 (686)
...-.. ....+. ..+.++|+.++....
T Consensus 267 ~~~~~~-~~~~~~--~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 267 VKYLKQ-VNELLF--KKVAPPLVTLLSSES 293 (734)
T ss_pred HHHHHH-HHHHHH--HHhcccceeeecccc
Confidence 544322 222222 223555555555443
No 175
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.90 E-value=0.02 Score=58.79 Aligned_cols=53 Identities=15% Similarity=0.426 Sum_probs=41.5
Q ss_pred CCCCCcccccCcccCcC--ce-Ec-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCC
Q 046850 279 NIPDEFRCPISLDLMRD--PV-IV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMAL 333 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~d--Pv-~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l 333 (686)
.-...|.|||+...|.. +. .+ +|||.|+..++...- ....||.|+.++...++
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCE
Confidence 34568999999999953 33 23 999999999999873 35679999999876653
No 176
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.84 E-value=0.13 Score=49.96 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHhhccccccccHHHHHh----------------cCcHHHHHHHHcCCC-----CHHHHHHHHHHHHHhc
Q 046850 448 HDPRIQENAVTALLNLSIFDNNKILIMA----------------AGAIDSIIEVLQSGK-----TMEARENAAATIFSLS 506 (686)
Q Consensus 448 ~~~~~~~~A~~aL~nLs~~~~~k~~i~~----------------~g~l~~Lv~lL~~~~-----~~e~~~~aa~~L~~Ls 506 (686)
++......++.+|.||+..+.....++. ..++..|+..+..|. ...-....+.+|.|+|
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 4445567788889999888777664443 236788888887731 3455778999999999
Q ss_pred cCchhhhHhhcCC-Cc--HHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHc---CcHHHHHHHh
Q 046850 507 MIDDCKVMIGGRP-RA--IPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVA---GAVPLLIELL 570 (686)
Q Consensus 507 ~~~~~~~~i~~~~-g~--i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~---G~v~~Ll~lL 570 (686)
..++.|..+.... +. +..|+..+.+.+..-+.-++++|.|+|...+....+... +++|.|+--|
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999999887633 33 677777777777777788999999999999988888764 3455544444
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.83 E-value=0.087 Score=46.68 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=60.4
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs 464 (686)
..+..|++.|. +.++....-|+.-|..+++..+..|..+-+.|+-..+..++.++|++++.+|+.++..+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 47889999994 567788888999999999999999998888899999999999999999999999886653
No 178
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.83 E-value=0.13 Score=41.50 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc-CCCchhHHHHHHHHHHHhCChhcHHHHHhCC
Q 046850 537 KKDAATALFNLAVYNANKASVVVAGAVPLLIELLM-DDKAGITDDALAVLALLLGCREGLEEIRKCR 602 (686)
Q Consensus 537 ~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~-~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~ 602 (686)
.+.|+||+.++++.+.....+-+.++++.++++.. ++...++--|..+|..++.+.+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 57899999999998888888888899999999985 5778899999999999999999999887765
No 179
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.75 E-value=8.8 Score=42.81 Aligned_cols=221 Identities=20% Similarity=0.144 Sum_probs=124.9
Q ss_pred hhHHHHHHHhhcCC----HHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc
Q 046850 394 MTAEFLVGKLAMGS----PEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~----~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
++.-.|++.+.++. ...-...+++...+.+.+++.+..+ .|.|-..|++.-..+...++.++..++...-
T Consensus 223 ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv- 296 (898)
T COG5240 223 MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV- 296 (898)
T ss_pred HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-
Confidence 34456666666543 2223334556666777777666654 4888889988888888899998888875331
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
-...+.+ ++..|-.+|++. ....|-.|+++|-.|+.....+..... +-+-.++.+.+..+...|...|..= .
T Consensus 297 ~~~~~~~-~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~kv~vcN-----~evEsLIsd~Nr~IstyAITtLLKT-G 368 (898)
T COG5240 297 GSQFVDQ-TVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQKVSVCN-----KEVESLISDENRTISTYAITTLLKT-G 368 (898)
T ss_pred CHHHHHH-HHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCceeeecC-----hhHHHHhhcccccchHHHHHHHHHc-C
Confidence 2222222 466677777887 888999999999999877655444433 3333444555555555566555431 2
Q ss_pred CCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHH--------HHHhCCCC------hHHHHHHHhcC
Q 046850 550 YNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLE--------EIRKCRVL------VPLLIDLLRFG 615 (686)
Q Consensus 550 ~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~--------~i~~~~~~------i~~Lv~lL~~~ 615 (686)
.+++..+++. .++.++.-++++=..+...|++.|.++- |..+. .+.+.|++ +..+..++. .
T Consensus 369 t~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~F--p~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~ 443 (898)
T COG5240 369 TEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLF--PSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-N 443 (898)
T ss_pred chhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhC--cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-h
Confidence 2335555443 2334443334433344444444444432 11111 12333431 344444443 4
Q ss_pred ChHHHHHHHHHHHHhhcc
Q 046850 616 SAKGKENSITLLLGLCKD 633 (686)
Q Consensus 616 s~~~ke~A~~~L~~L~~~ 633 (686)
.|+-||.|+..|+.....
T Consensus 444 ~p~skEraLe~LC~fIED 461 (898)
T COG5240 444 DPDSKERALEVLCTFIED 461 (898)
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 566777777776666543
No 180
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.72 E-value=1.7 Score=51.35 Aligned_cols=241 Identities=19% Similarity=0.181 Sum_probs=141.8
Q ss_pred HHHHhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHc----CCC---CHHHHHHH
Q 046850 431 IIAEAGAIPFLVTLLSS-----HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQ----SGK---TMEARENA 498 (686)
Q Consensus 431 ~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~----~~~---~~e~~~~a 498 (686)
.+.+.|++..++.++.+ .+.......+.+|...+.-..||..+++.|+++.|++.|. .+. ..+.-+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 34567899999998875 3445667777888888888899999999999999998885 321 13444444
Q ss_pred HHHHHHhccCch---hhhHhh--c-------CCCcHHHHHHhcccC----ChHHHHHHHHHHHHhcCCCCcHHHHHHcCc
Q 046850 499 AATIFSLSMIDD---CKVMIG--G-------RPRAIPALVGLLREG----TTAGKKDAATALFNLAVYNANKASVVVAGA 562 (686)
Q Consensus 499 a~~L~~Ls~~~~---~~~~i~--~-------~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~ 562 (686)
..++-.|...-. ...... . ...-+..|++.+.+. ++.+....+.+|-+|+..++..-..+-.-.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 444444432211 111000 1 122366677766653 578888999999999998765433322111
Q ss_pred HHHHHHHh--cCCCchhHHHHHHHHHHHh----CCh---hcHHHHHhCCCChHHHHHHHhc--------CChHHHH----
Q 046850 563 VPLLIELL--MDDKAGITDDALAVLALLL----GCR---EGLEEIRKCRVLVPLLIDLLRF--------GSAKGKE---- 621 (686)
Q Consensus 563 v~~Ll~lL--~~~~~~v~~~al~~L~nLa----~~~---~~~~~i~~~~~~i~~Lv~lL~~--------~s~~~ke---- 621 (686)
.+.+++= ......--...+..+..++ .+. .-|+.|++.|. +...+.+|.. .+++.++
T Consensus 272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GI-v~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGI-VQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhH-HHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 2221211 1110000012244444443 233 33778899888 8888887765 3444555
Q ss_pred ----HHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Q 046850 622 ----NSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNR 676 (686)
Q Consensus 622 ----~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~ 676 (686)
+++.+|.-||....+ .+.++. .++++.+..|=+.. +.++-..|..+|..+.+
T Consensus 350 psLp~iL~lL~GLa~gh~~--tQ~~~~-~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEP--TQLLIA-EQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CcHHHHHHHHHHHHhcCHH--HHHHHH-hhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 578888888876432 334444 55677777665544 44455566666666655
No 181
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.71 E-value=0.0092 Score=47.92 Aligned_cols=47 Identities=21% Similarity=0.482 Sum_probs=23.0
Q ss_pred CcccccCcccCc----CceEc----cCcccccHHhHHHHHhh--CC--------CCCCCCCcccc
Q 046850 283 EFRCPISLDLMR----DPVIV----ASGHTYDRNSIAQWINS--GH--------HTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~----dPv~~----~cght~cr~ci~~w~~~--~~--------~~CP~c~~~l~ 329 (686)
+..|+||..... .|+.+ .|+++|=..|+.+||.. +. ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998654 24443 68999999999999985 11 25999988764
No 182
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=1.5 Score=49.78 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=65.0
Q ss_pred HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCC--HHHHHHHHHHhhcccccc
Q 046850 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD--PRIQENAVTALLNLSIFD 467 (686)
Q Consensus 390 ~~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~nLs~~~ 467 (686)
+..+-.+..+.+.|.|.++..+.-|+..+.++-. -++++.+. .-|| ++|-+++ .-++..|+-+|+.|-...
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence 3344566777788888899889999999988764 34555443 2233 6666644 335566666666664432
Q ss_pred ccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 046850 468 NNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSM 507 (686)
Q Consensus 468 ~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~ 507 (686)
+ ..+-..+....++++|++. +..+...+...+--|+.
T Consensus 180 p--Dl~~~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 180 P--DLVNPGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVK 216 (938)
T ss_pred c--cccChhhHHHHHHHHhCcc-ccceeeehHHHHHHHHH
Confidence 1 2222235677777777776 55555555555555554
No 183
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.71 E-value=0.24 Score=56.02 Aligned_cols=216 Identities=16% Similarity=0.184 Sum_probs=115.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc----HHHH
Q 046850 398 FLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN----KILI 473 (686)
Q Consensus 398 ~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~----k~~i 473 (686)
.|.+.|....+++--..+.+|..+.....-.+..=--.|.+|.|..+|++....++++++..++.++..... |+.|
T Consensus 845 vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM 924 (1172)
T KOG0213|consen 845 VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM 924 (1172)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH
Confidence 345666666677655555555544431111111111247899999999999999999999999999876433 4444
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCc
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~ 553 (686)
- +-=.|+++|+.. +.+.|.+|..++..++.. |+- ..++..|++=|+..+-..+.-...++.-.+....-
T Consensus 925 R---IcfeLlelLkah-kK~iRRaa~nTfG~Iaka------IGP-qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p 993 (1172)
T KOG0213|consen 925 R---ICFELLELLKAH-KKEIRRAAVNTFGYIAKA------IGP-QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP 993 (1172)
T ss_pred H---HHHHHHHHHHHH-HHHHHHHHHhhhhHHHHh------cCH-HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc
Confidence 3 223467777777 889999999999888653 333 44555555555443322222222222222211100
Q ss_pred HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC--ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 554 KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG--CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 554 ~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~--~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
..++|.|+.--..++..++.-.+..|.-+-. +.-++.-+.. . .|.|-.-|...+..-+..|+.++.+|+
T Consensus 994 ------FtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya--v-~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 994 ------FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA--V-TPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred ------hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH--h-hHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 0133444433344555555555555554432 1222222221 2 444444444445555555555555555
Q ss_pred cc
Q 046850 632 KD 633 (686)
Q Consensus 632 ~~ 633 (686)
-+
T Consensus 1065 Lg 1066 (1172)
T KOG0213|consen 1065 LG 1066 (1172)
T ss_pred cC
Confidence 43
No 184
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.021 Score=57.34 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=39.3
Q ss_pred ccccCcc-cCcCceE----ccCcccccHHhHHHHHhhCCCCCCCCCccccCCCC
Q 046850 285 RCPISLD-LMRDPVI----VASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMAL 333 (686)
Q Consensus 285 ~Cpic~~-~m~dPv~----~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l 333 (686)
.||.|.. ....|-+ -.|||+.|-+|+...|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 5899974 4445532 28999999999999999999999999988765544
No 185
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.019 Score=60.42 Aligned_cols=49 Identities=18% Similarity=0.431 Sum_probs=40.3
Q ss_pred CCCcccccCcccCcCce-----E---ccCcccccHHhHHHHHhhC------CCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRDPV-----I---VASGHTYDRNSIAQWINSG------HHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv-----~---~~cght~cr~ci~~w~~~~------~~~CP~c~~~l~ 329 (686)
-.+..|-||++...+++ . -+|.|+||..||.+|-... .+.||.|+....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56899999999887776 3 3799999999999998553 378999998753
No 186
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.60 E-value=1.5 Score=46.20 Aligned_cols=183 Identities=19% Similarity=0.227 Sum_probs=106.2
Q ss_pred hcCCCHHHHHHHHHHhhccccccccHHHHHh--cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--c-hhhhHhhcCC
Q 046850 445 LSSHDPRIQENAVTALLNLSIFDNNKILIMA--AGAIDSIIEVLQSGKTMEARENAAATIFSLSMI--D-DCKVMIGGRP 519 (686)
Q Consensus 445 L~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~--~-~~~~~i~~~~ 519 (686)
+.......|+.|+..+.++.........+.+ ...+..+.+.++.| +.+-+..|+.++.-|+.. . +....+. .
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~--~ 128 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIF--E 128 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHH--H
Confidence 3444466666676666665543332233322 24678888999998 556666777766666554 1 2333333 3
Q ss_pred CcHHHHHHhcccCC--hHHHHHHHHHHHHhcCCCCc-HHHHH-HcCcHHHHHHHh--c-C---------CCchhHHHHHH
Q 046850 520 RAIPALVGLLREGT--TAGKKDAATALFNLAVYNAN-KASVV-VAGAVPLLIELL--M-D---------DKAGITDDALA 583 (686)
Q Consensus 520 g~i~~Lv~lL~~~~--~~~~~~Al~aL~nLs~~~~~-~~~iv-~~G~v~~Ll~lL--~-~---------~~~~v~~~al~ 583 (686)
...|.|...+.+++ +..+..++.+|.-++..... -..+. -...+..+.... . + +++.+...|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 47889999988765 35556666677766553221 11111 011222222211 1 1 13457777877
Q ss_pred HHHHHhCC-hhc-HHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhc
Q 046850 584 VLALLLGC-REG-LEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCK 632 (686)
Q Consensus 584 ~L~nLa~~-~~~-~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 632 (686)
.-+.|... +.. ....++ .. +|.|+.+|++.+..+|-.|..+|.-|..
T Consensus 209 aW~lLlt~~~~~~~~~~~~-~~-~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLE-EA-LPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHhcCCHHHHHHHHH-HH-HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 77777653 332 222222 34 7999999999999999998888776654
No 187
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.58 E-value=0.71 Score=50.75 Aligned_cols=162 Identities=17% Similarity=0.120 Sum_probs=117.0
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCCh----HHHHHHHHHHHHhcCCCCc
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTT----AGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~Al~aL~nLs~~~~~ 553 (686)
....+.+++.+| +...+..|...|.+|+........+.. ..++..|..++.++.. .+....+.++..|-.+.-.
T Consensus 84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 355677888888 778888899999999999988888888 7789999999988764 6667777777777655433
Q ss_pred HHHHHHcCcHHHHHHHh--cCCCchhHHHHHHHHHHHhCChh-cHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 554 KASVVVAGAVPLLIELL--MDDKAGITDDALAVLALLLGCRE-GLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 554 ~~~iv~~G~v~~Ll~lL--~~~~~~v~~~al~~L~nLa~~~~-~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
-...+...+|.....+. ...+..+...|+..|.++..+.. -++.+.+.-. +..|+..++.++..++..|.+.|-.+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~-i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVP-IETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCc-HHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33333333344444444 22356777889999999987555 4555555555 99999999988888888899988888
Q ss_pred hccChHHHHHHH
Q 046850 631 CKDGGEEVARRL 642 (686)
Q Consensus 631 ~~~~~~~~~~~l 642 (686)
....++.-+..+
T Consensus 241 ~~~a~~~~R~~~ 252 (713)
T KOG2999|consen 241 FRKAPDDKRFEM 252 (713)
T ss_pred HhhCChHHHHHH
Confidence 766554433333
No 188
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.57 E-value=0.11 Score=54.96 Aligned_cols=51 Identities=27% Similarity=0.509 Sum_probs=44.7
Q ss_pred cccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCC
Q 046850 284 FRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIP 335 (686)
Q Consensus 284 ~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~ 335 (686)
+.|.|++++-++||+- .+||.|+|+-|++++.+ +..||++++++....+.+
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 4799999999999986 79999999999999998 889999999887655543
No 189
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.36 E-value=0.04 Score=44.04 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=34.0
Q ss_pred ccccCcccCc----CceEc-cCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 285 RCPISLDLMR----DPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 285 ~Cpic~~~m~----dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
+||-|+.-|. =||.. .|.|.|--.||.+|+.. ...||.+++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 6777776442 14444 79999999999999998 88999998874
No 190
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.34 E-value=0.16 Score=43.78 Aligned_cols=66 Identities=24% Similarity=0.192 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHh--cCCCchhHHHHHHHHHHHhC-ChhcHHHHHhC
Q 046850 536 GKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELL--MDDKAGITDDALAVLALLLG-CREGLEEIRKC 601 (686)
Q Consensus 536 ~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL--~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~ 601 (686)
.+...+.+|.||+.... ++..+.+.|+++.++..- .+.++.+++-|+.++.||+. +++++..|.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 46678899999998765 888888999999999886 45689999999999999996 66666666543
No 191
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.34 E-value=0.97 Score=52.54 Aligned_cols=224 Identities=15% Similarity=0.175 Sum_probs=151.6
Q ss_pred cCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHH
Q 046850 446 SSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPAL 525 (686)
Q Consensus 446 ~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~L 525 (686)
.+..|...-.|.+++...+.....-..+... .+...+..+.-.....++..|+.+++..+...-..... .+++..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~---p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQ---PMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccc---hHHHHHH
Confidence 4456666667777777666432221222221 23344444444436677888888888877433222222 6788899
Q ss_pred HHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHh--cCCCchhHHHHHHHHHHHhCChhcHHHHHhCCC
Q 046850 526 VGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELL--MDDKAGITDDALAVLALLLGCREGLEEIRKCRV 603 (686)
Q Consensus 526 v~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL--~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~ 603 (686)
.++....+.++...-..+|+..+..++......++-+.|-.+.++ .+.++.+...+-.++..|+....+..-+.+ -
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~- 613 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-R- 613 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-H-
Confidence 999888888999999999999999998888888888888887776 346778888888888888763332222221 2
Q ss_pred ChHHHHHHHhcCC----hHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHH-HHhcCCHHHHHHHHHHHHHHHhc
Q 046850 604 LVPLLIDLLRFGS----AKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQS-LTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 604 ~i~~Lv~lL~~~s----~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~-Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
++|.|+.+|.... +....-|+.+|..+.++.++...+.+.. -+.|++.+ .+.+++...-+.|..+|+.+-..
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 3899999998743 5677788888888888877665555543 24666666 45666777778888888876543
No 192
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.023 Score=60.68 Aligned_cols=50 Identities=20% Similarity=0.482 Sum_probs=39.0
Q ss_pred CCCCcccccCcccC-----------------cCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 280 IPDEFRCPISLDLM-----------------RDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 280 ~~~~~~Cpic~~~m-----------------~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
....--|+||+... ++-+.++|.|.|-+.|+++|.+.-.-.||+||++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45567899998533 123445999999999999999864668999999886
No 193
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.24 E-value=0.73 Score=52.91 Aligned_cols=241 Identities=15% Similarity=0.094 Sum_probs=151.9
Q ss_pred CchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhh-ccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHH
Q 046850 425 GMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALL-NLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIF 503 (686)
Q Consensus 425 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~-nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~ 503 (686)
...-|...+..|+...|+.+.....+.....+..+|. .++...+. ....++++...+......-....++-++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3445666778899999999998888888888888877 33322111 12345555555554322223445778899
Q ss_pred HhccCch-hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHH-HH-cCcHHHHHHHhcCCCchhHHH
Q 046850 504 SLSMIDD-CKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASV-VV-AGAVPLLIELLMDDKAGITDD 580 (686)
Q Consensus 504 ~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~i-v~-~G~v~~Ll~lL~~~~~~v~~~ 580 (686)
||+..++ .+..+.. .-+++.+-.++...++-.+..++..+.||..++-.-.+. ++ .-.++.....+..........
T Consensus 568 nLas~s~s~r~~i~k-e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 568 NLASISESDRQKILK-EKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred cccCcchhhHHHHHH-HhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 9987774 4556666 556666777778888999999999999999988744333 33 233444444444334444445
Q ss_pred HHHHHHHHhCChhcHHH-HHh-CCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc
Q 046850 581 ALAVLALLLGCREGLEE-IRK-CRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD 658 (686)
Q Consensus 581 al~~L~nLa~~~~~~~~-i~~-~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~ 658 (686)
+++++..++...++.-. +.+ ... ...++.++.+.++.++...+.+.+++... ..+....++. ...++.+..+..-
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~-~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~-~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEW-LEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFE-TEVMELLSGLQKL 723 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcc-hHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhcc-chHHHHHHHHHHh
Confidence 55566655443332211 322 233 57778888889999999999999996544 4677777776 6667777766655
Q ss_pred CCHHHHHHHHHHHHHH
Q 046850 659 GSLKARRKADALLRLL 674 (686)
Q Consensus 659 ~~~~~k~~A~~lL~~l 674 (686)
.-...++.+...|...
T Consensus 724 ~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 724 NRAPKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhhhHHHHH
Confidence 4333444444444433
No 194
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.23 E-value=0.29 Score=47.37 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=76.9
Q ss_pred CcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHHHHhcC---------CCchhHHHHHHHHHHH
Q 046850 520 RAIPALVGLLREGTTAGKKDAATALFNLAVYNA--NKASVVVAGAVPLLIELLMD---------DKAGITDDALAVLALL 588 (686)
Q Consensus 520 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll~lL~~---------~~~~v~~~al~~L~nL 588 (686)
.-...+++.+.++.... ..+.-|.-.-...+ -...+++.|++..|+.+|.. .+......++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34555666665554322 22222322222222 35678889999999998831 2446778899999999
Q ss_pred hCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 589 LGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 589 a~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
..+..|...++....++..|+..|.+.+..++..++.+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999997766999999998899999999999999988
No 195
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.13 E-value=2 Score=45.10 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=120.3
Q ss_pred CHHHHH-HhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH-
Q 046850 437 AIPFLV-TLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM- 514 (686)
Q Consensus 437 ~i~~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~- 514 (686)
.+..|+ .-+.+.++.+++.|+.+|+-.+.-+.. +.. ..++.+...++.+ +.+++..|+.+++.+.........
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a~-~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LAK-EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HHH-HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 677889999999999999998875542 222 2477788888777 999999999999999765421111
Q ss_pred --------hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC----CCchhHHHHH
Q 046850 515 --------IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMD----DKAGITDDAL 582 (686)
Q Consensus 515 --------i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~----~~~~v~~~al 582 (686)
... ...+..+.+.+.+.+++++..|+..++.|-....... ...++..|+-+..+ ++..++..-.
T Consensus 102 ~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 102 SESDNDESVDS-KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred chhccCccchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 122 4578888889999999999999999999987765333 12233334333322 2344444444
Q ss_pred HHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCC----hHH---HHHHHHHHHHhhc
Q 046850 583 AVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGS----AKG---KENSITLLLGLCK 632 (686)
Q Consensus 583 ~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s----~~~---ke~A~~~L~~L~~ 632 (686)
..+-..|......+..+.... +|.+..+.+... +.. -...+..+..++.
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f-~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAF-LPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 455566765554455566565 788888776532 211 2244555555554
No 196
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=94.12 E-value=0.14 Score=50.77 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=104.1
Q ss_pred HHHHHhccCchhhhHhhcCCCcHHHHHHhcc--c------------------------CC--------hHHHHHHHHHHH
Q 046850 500 ATIFSLSMIDDCKVMIGGRPRAIPALVGLLR--E------------------------GT--------TAGKKDAATALF 545 (686)
Q Consensus 500 ~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~------------------------~~--------~~~~~~Al~aL~ 545 (686)
.+|.+||..+.|-..+....|.+-.|-++|. + .. ..++++|+..|.
T Consensus 12 NIlR~LSFvpGnd~emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~~~~~wwwd~l~~lREnalV~la 91 (257)
T PF12031_consen 12 NILRGLSFVPGNDTEMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSCSEAEWWWDCLEQLRENALVTLA 91 (257)
T ss_pred HHHhccCcCCCcHHHHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhccccccchHHHHHHHHHHHhhcceEeee
Confidence 4566777777777777765566655555542 0 00 145677777888
Q ss_pred HhcCCCC--cHHHHHHcCcHHHHHHHh-------cC--------CCchhHHHHHHHHHHHhCChhcHHHHHhCCC-----
Q 046850 546 NLAVYNA--NKASVVVAGAVPLLIELL-------MD--------DKAGITDDALAVLALLLGCREGLEEIRKCRV----- 603 (686)
Q Consensus 546 nLs~~~~--~~~~iv~~G~v~~Ll~lL-------~~--------~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~----- 603 (686)
|++..=+ .-..-+..-++..|+.-. .+ ....-+..|+.+|..|+-.+.+...++.++.
T Consensus 92 NisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE 171 (257)
T PF12031_consen 92 NISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDLILATPPFSRLE 171 (257)
T ss_pred eeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHH
Confidence 8774322 111111112222222222 11 1245688899999999988888888888775
Q ss_pred -ChHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHH
Q 046850 604 -LVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARR 665 (686)
Q Consensus 604 -~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~ 665 (686)
++..|++++.. .++..||-|+.+|.+||..+...++. +....+.+..|+.++.+....+..
T Consensus 172 ~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~-iA~q~~~i~~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 172 RLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARA-IAMQKPCISHLIAFIEDAEQNAHQ 234 (257)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHH-HHHhhchHHHHHHHHHHHHHHHHH
Confidence 13445555543 67889999999999999887544434 444478999999999887554443
No 197
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.10 E-value=0.17 Score=43.61 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc--CCCHHHHHHHHHHhhcccccc-ccHHHHHh
Q 046850 411 QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS--SHDPRIQENAVTALLNLSIFD-NNKILIMA 475 (686)
Q Consensus 411 q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~ 475 (686)
+...++.|.+++..++.++..+.+.|+||.++.... ..+|-+++.|+.++.||..++ +|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456778999999999999999999999999998654 468999999999999999775 55766664
No 198
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.06 E-value=2.3 Score=48.94 Aligned_cols=208 Identities=17% Similarity=0.145 Sum_probs=134.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhc
Q 046850 397 EFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAA 476 (686)
Q Consensus 397 ~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~ 476 (686)
..|..+|.|.....+.+|++-|-.+...+.+... ..|.+|+-..+.|.+++.-.---|...+...++-..
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL---- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL---- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----
Confidence 4577888888878888888776655443444333 568899999999999988777767666654444111
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHH
Q 046850 477 GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKA 555 (686)
Q Consensus 477 g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~ 555 (686)
=-|..+-+-|+++ +..+|..|.++|..+=. .+.. .=++-++-+...+.++.+++.|+.||-.|=+-+. .+.
T Consensus 108 LSIntfQk~L~Dp-N~LiRasALRvlSsIRv------p~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 108 LSINTFQKALKDP-NQLIRASALRVLSSIRV------PMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eeHHHHHhhhcCC-cHHHHHHHHHHHHhcch------hhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 1356667778888 99999988888876622 2211 1122233344566788999999999998876554 444
Q ss_pred HHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhc
Q 046850 556 SVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCK 632 (686)
Q Consensus 556 ~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 632 (686)
++ +..+-.+|.+.++.++-.|+.+...+|-. +-.++. +- ...|..+|-.-+.-.|-..+..|..-|+
T Consensus 180 qL-----~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIH-kn-yrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 180 QL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIH-KN-YRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred HH-----HHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhh-HH-HHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 43 34556667888999999999999988842 122222 22 3455555544444445555555544443
No 199
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.03 E-value=0.27 Score=42.23 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=55.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
++.++..+...+.++|.+|+.+|.+++..........+- .+.+.|.+++.+.++.+|..|..+-+++.
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~---~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN---EIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 677778888889999999999999999876555544443 36899999999999999999888877764
No 200
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.00 E-value=0.18 Score=43.31 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=51.5
Q ss_pred CCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHH--cCcHHHHHHHhcCCCchhHHHHHHHHHHH
Q 046850 519 PRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVV--AGAVPLLIELLMDDKAGITDDALAVLALL 588 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~--~G~v~~Ll~lL~~~~~~v~~~al~~L~nL 588 (686)
...+++++..+.+.+.+++..|+.+|+|++.... ..++. ..++..|.+++.++++.++..| ..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 3489999999999999999999999999986543 33332 4677888888888888876655 555444
No 201
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.91 E-value=0.013 Score=65.67 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=41.2
Q ss_pred CCCcccccCcccCcCceEc---cCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMRDPVIV---ASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~---~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
...-.||+|..-+.|-.+. .|+|.||..||..|.+. ..+||.|+..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 4567899999888876654 89999999999999987 7899999988653
No 202
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.89 E-value=3.3 Score=45.01 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=97.1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCch----hhhHhhcCCCcHHHHHHhcccCC-----h--HHHHHHHHHHHHhcCC
Q 046850 482 IIEVLQSGKTMEARENAAATIFSLSMIDD----CKVMIGGRPRAIPALVGLLREGT-----T--AGKKDAATALFNLAVY 550 (686)
Q Consensus 482 Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~-----~--~~~~~Al~aL~nLs~~ 550 (686)
+..+++.. +++-+-.|.-....+..+++ +|..+.+ .=+.+.+-.+|.+++ + -.+.-++..|...|+.
T Consensus 16 ~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 16 CLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred HHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 44455555 77778888888888887763 6667777 666788888887542 2 3455688889999998
Q ss_pred CC--cHHHHHHcCcHHHHHHHhcC-CC------chhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc
Q 046850 551 NA--NKASVVVAGAVPLLIELLMD-DK------AGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 551 ~~--~~~~iv~~G~v~~Ll~lL~~-~~------~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~ 614 (686)
++ ....+++ .||.|+..++. .+ ..+.+.+-.+|..+++++.|.+.++..|+ ++.+.++-..
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~-~~~~~Q~y~~ 163 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGG-LRVIAQMYEL 163 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCc-hHHHHHHHhC
Confidence 87 5666665 48999998843 22 34889999999999999999999999999 9999986543
No 203
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.03 Score=58.19 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=34.8
Q ss_pred CcccccCcccCcCc--e-Ec-cCcccccHHhHHHHHhhC--CCCCCCCCccccCC
Q 046850 283 EFRCPISLDLMRDP--V-IV-ASGHTYDRNSIAQWINSG--HHTCPKSGQRLIHM 331 (686)
Q Consensus 283 ~~~Cpic~~~m~dP--v-~~-~cght~cr~ci~~w~~~~--~~~CP~c~~~l~~~ 331 (686)
.-.|.||.+.+-.- + .+ +|||+|--.|+.+||... +++||.|+-.++..
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 34799995544211 1 12 699999999999999963 36899998555543
No 204
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.041 Score=57.88 Aligned_cols=47 Identities=19% Similarity=0.536 Sum_probs=40.1
Q ss_pred CCCCcccccCcccCc---CceEccCcccccHHhHHHHHhhCC--CCCCCCCc
Q 046850 280 IPDEFRCPISLDLMR---DPVIVASGHTYDRNSIAQWINSGH--HTCPKSGQ 326 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~---dPv~~~cght~cr~ci~~w~~~~~--~~CP~c~~ 326 (686)
...-|.|||..+--. .|+.+.|||..++..+.+..+.|. +.||.|-.
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 456799999988664 488899999999999999999887 88999943
No 205
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.74 E-value=3.8 Score=43.19 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=110.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc-CCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC--C-CcH
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG-RPRAIPALVGLLREGTTAGKKDAATALFNLAVY--N-ANK 554 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--~-~~~ 554 (686)
+...+..+.+. +...|+.+...+.++.........+.. ..-.+..+...++.|+.+-+..|+.++.-|+.. . ...
T Consensus 45 L~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 44455556666 788999999999998765533333321 123577788888888876666677777766654 2 244
Q ss_pred HHHHHcCcHHHHHHHhcCCC--chhHHHHHHHHHHHh---C-ChhcHHHHHhCCCChHHHHH--HHhc-C---------C
Q 046850 555 ASVVVAGAVPLLIELLMDDK--AGITDDALAVLALLL---G-CREGLEEIRKCRVLVPLLID--LLRF-G---------S 616 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~~--~~v~~~al~~L~nLa---~-~~~~~~~i~~~~~~i~~Lv~--lL~~-~---------s 616 (686)
..+.+ .+.|.|.+.+.+.+ ..++..++.+|+.++ . .++.....++ . +..+.. +++. + +
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~-le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--S-LESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--H-HHHHHHHHhcCcCCCcccccCCCc
Confidence 44444 57788888887653 344455565666554 2 2222221111 1 221111 1221 1 2
Q ss_pred hHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 617 AKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 617 ~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+.+.-.|+....-|.+.-+........+ ..+|.|..++.+.+..+|-.|...|.+|-+.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3445544444333333322322223332 2499999999999999999999999988554
No 206
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.034 Score=58.30 Aligned_cols=59 Identities=24% Similarity=0.564 Sum_probs=43.8
Q ss_pred cccccCcccCcCce-----EccCcccccHHhHHHHHhh-CCCCCCCCCccccCCCCCCcHHHHHH
Q 046850 284 FRCPISLDLMRDPV-----IVASGHTYDRNSIAQWINS-GHHTCPKSGQRLIHMALIPNYTLKSL 342 (686)
Q Consensus 284 ~~Cpic~~~m~dPv-----~~~cght~cr~ci~~w~~~-~~~~CP~c~~~l~~~~l~~n~~l~~~ 342 (686)
-+||||++-..-|+ .+.|||-|-..||++|+.. -...||.|.-.-....+.+-+++|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 48999998766554 4589999999999999963 13579999766555566666655544
No 207
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.47 E-value=0.67 Score=53.24 Aligned_cols=192 Identities=15% Similarity=0.108 Sum_probs=130.0
Q ss_pred ccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHH-hccCchhhhHhhcCCCcHHHHHHhcccCCh-HHHHHHHHHHH
Q 046850 468 NNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFS-LSMIDDCKVMIGGRPRAIPALVGLLREGTT-AGKKDAATALF 545 (686)
Q Consensus 468 ~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~Al~aL~ 545 (686)
..+...++.|+...|+.+...+ ..+++.....+|.. ++... .. ...+++++.+.+..... --...++.++.
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~---~~---~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPG---ER---SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCC---Cc---hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 3366777889999999999988 88999988888872 21111 00 13456666666654432 34556999999
Q ss_pred HhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcH-HHHHhCCCChHHHHHHHhcCChHHHHHH
Q 046850 546 NLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGL-EEIRKCRVLVPLLIDLLRFGSAKGKENS 623 (686)
Q Consensus 546 nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~-~~i~~~~~~i~~Lv~lL~~~s~~~ke~A 623 (686)
||++.++ .|.++++.-+++.+-.++.+.++..+..++..+.||.-++..- ..+++....++.....+..........+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9998776 7888888888887777888889999999999999998776653 3345533226777777766555556666
Q ss_pred HHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHH
Q 046850 624 ITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKA 667 (686)
Q Consensus 624 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A 667 (686)
++++..+.+.....+...+.. ......++.++.++++.++...
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~-~~~~e~~~~~i~~~~~~~qhrg 690 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILEL-LEWLEILVRAIQDEDDEIQHRG 690 (748)
T ss_pred cccccchhhcchhhhhhHHHh-hcchHHHHHhhcCchhhhhhhh
Confidence 666665555442222212111 3356777888888877766543
No 208
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.28 E-value=6.5 Score=43.76 Aligned_cols=275 Identities=13% Similarity=0.120 Sum_probs=161.5
Q ss_pred hHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCC-HHHHH-HhhcC-CCHHHHHHHHHHhhc-ccccccc
Q 046850 395 TAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGA-IPFLV-TLLSS-HDPRIQENAVTALLN-LSIFDNN 469 (686)
Q Consensus 395 ~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~-i~~Lv-~lL~s-~~~~~~~~A~~aL~n-Ls~~~~~ 469 (686)
....++.....+ ....+..++.++...+. +......+...++ +-.++ .-++. ++..++-.|+.+|.+ |-.-.+|
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n 212 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN 212 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 445556655544 44567788888888776 3333344444433 22333 34444 577888899998877 3211111
Q ss_pred HHHHHhcC-cHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 470 KILIMAAG-AIDSIIEVLQSGKTMEARENAAATIFSLSM-IDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 470 k~~i~~~g-~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
-..=.+-+ .+...++.-+.+ +.+++..|...|..+-. +...-..+.+ ..........+++.+.++...|+..-..+
T Consensus 213 f~~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsti 290 (858)
T COG5215 213 FCYEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTI 290 (858)
T ss_pred hcchhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 11001111 223334444445 88888888888877643 3333334444 33445555667888888888777766555
Q ss_pred cCCCC-----------------cHHHHHHcCcHHHHHHHhcC-------CCchhHHHHHHHHHHHhCChhcHHHHHhCCC
Q 046850 548 AVYNA-----------------NKASVVVAGAVPLLIELLMD-------DKAGITDDALAVLALLLGCREGLEEIRKCRV 603 (686)
Q Consensus 548 s~~~~-----------------~~~~iv~~G~v~~Ll~lL~~-------~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~ 603 (686)
|...- +-.+..-+.++|.|+.+|.. .+-.+-..|..+|...+.... ..|++ .+
T Consensus 291 ceEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~~-pV 367 (858)
T COG5215 291 CEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIMR-PV 367 (858)
T ss_pred HHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhHH-HH
Confidence 53211 11122223478999999943 123344556666666654211 12222 12
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 604 LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 604 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+..+-+-+++.+-..++.|+-++..+.......+...++ +.++|.+..+..+..-.++..++|.+-.+.++-
T Consensus 368 -l~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 368 -LGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred -HHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 223333455567778999999999998877666666665 346888888888777788999999988887653
No 209
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.11 E-value=2 Score=45.70 Aligned_cols=218 Identities=16% Similarity=0.133 Sum_probs=151.8
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHH-HHHHh--CCHHHHHH-hhc-CCCHHHHHHHHHHhhccccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRR-IIAEA--GAIPFLVT-LLS-SHDPRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~-~i~~~--g~i~~Lv~-lL~-s~~~~~~~~A~~aL~nLs~~~~ 468 (686)
+.+..|+..|..-+.|.+..++....++.......+. ..++. .--|-++. ++. .+++++.-.+...|.....++.
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 5778888999999999999999999999887666654 22211 11133333 332 2567777888888999888877
Q ss_pred cHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhc-C-CCcHHHHHHhcccCChHHHHHHHHHHH
Q 046850 469 NKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGG-R-PRAIPALVGLLREGTTAGKKDAATALF 545 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~-~-~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 545 (686)
-...+.....+..+.+....+ +-++-..|..++..|-..+ .....+.. . ...+.....+|.+++--++..++..|.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ 234 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLG 234 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHH
Confidence 777788888899999999888 9999999999999975543 33222221 1 246677888999999999999999999
Q ss_pred HhcCCCCcHHHHHH----cCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhc---HHHHHhCCCChHHHHHHHhc
Q 046850 546 NLAVYNANKASVVV----AGAVPLLIELLMDDKAGITDDALAVLALLLGCREG---LEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 546 nLs~~~~~~~~iv~----~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~---~~~i~~~~~~i~~Lv~lL~~ 614 (686)
.|-.+..|...|.. ..-+..++.+|.+.+..++.+|..++.-...+|.. ...|+..+- ..|++++..
T Consensus 235 ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr--~kLl~fl~~ 308 (335)
T PF08569_consen 235 ELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNR--EKLLRFLKD 308 (335)
T ss_dssp HHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTH--HHHHHHHHT
T ss_pred HHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHHHHHHh
Confidence 99999998766544 34578889999999999999999999988754432 222333332 455555544
No 210
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.01 E-value=0.045 Score=56.97 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=39.4
Q ss_pred ccccCcccCcCceEccCcccccHHhHHHHHhh-CCCCCCCCCccccC
Q 046850 285 RCPISLDLMRDPVIVASGHTYDRNSIAQWINS-GHHTCPKSGQRLIH 330 (686)
Q Consensus 285 ~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~-~~~~CP~c~~~l~~ 330 (686)
.|.||-+-=+|=-+-+|||-.|-.|+..|..+ +..+||.||..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 68999998888666699999999999999965 47899999988753
No 211
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.90 E-value=0.12 Score=38.21 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=31.0
Q ss_pred ccccCcc--cCcCceEccCc-----ccccHHhHHHHHhhC-CCCCCCCC
Q 046850 285 RCPISLD--LMRDPVIVASG-----HTYDRNSIAQWINSG-HHTCPKSG 325 (686)
Q Consensus 285 ~Cpic~~--~m~dPv~~~cg-----ht~cr~ci~~w~~~~-~~~CP~c~ 325 (686)
.|-||++ .-.+|.+.+|. +.+=+.|+.+|+... ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 44577777775 557789999999873 56899985
No 212
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.64 E-value=9.4 Score=36.64 Aligned_cols=92 Identities=22% Similarity=0.211 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc
Q 046850 492 MEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLM 571 (686)
Q Consensus 492 ~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~ 571 (686)
+.+|.+++.+++.|+....+ +. ...+|.+...|+++++.+++.|+.+|.+|...+-.+.+ ...+..++.+|.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 57899999999999876432 21 34688999999999999999999999999876533222 122367788889
Q ss_pred CCCchhHHHHHHHHHHHhCC
Q 046850 572 DDKAGITDDALAVLALLLGC 591 (686)
Q Consensus 572 ~~~~~v~~~al~~L~nLa~~ 591 (686)
++++.++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 213
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.081 Score=55.04 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=39.2
Q ss_pred CCCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.....|....|-||.+-.++.+.++|||+.| |+.-.. ....||+|++.+.
T Consensus 298 ~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 298 TFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred cccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 4445667779999999999999999999988 755433 3567999998753
No 214
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.44 E-value=0.089 Score=38.42 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=22.1
Q ss_pred cccCcccCc--CceEc--cCcccccHHhHHHHHhhCCCCCCCCCcc
Q 046850 286 CPISLDLMR--DPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQR 327 (686)
Q Consensus 286 Cpic~~~m~--dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~ 327 (686)
||+|.+.|. |--.. .||...|+.|..+-...+...||.|+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 788888772 21122 7999999999888877668899999875
No 215
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.41 E-value=0.25 Score=46.57 Aligned_cols=146 Identities=18% Similarity=0.128 Sum_probs=100.3
Q ss_pred cHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHH
Q 046850 478 AIDSIIEVLQS-GKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKA 555 (686)
Q Consensus 478 ~l~~Lv~lL~~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~ 555 (686)
.++.++..|.. ..+.++|..+.-++..+- +..+....+ -+-+.+-.++..++.+....++.++..|-...+ -..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 34556666664 336788888888888773 444444432 233334444455455677788888888877665 333
Q ss_pred HH-HHcCcHHHHHHHhc--CCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CChH-HHHHHHHHHHH
Q 046850 556 SV-VVAGAVPLLIELLM--DDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSAK-GKENSITLLLG 629 (686)
Q Consensus 556 ~i-v~~G~v~~Ll~lL~--~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~-~ke~A~~~L~~ 629 (686)
.+ ...|..+.++.+.. ..+..+...++.+|..=|.....|..|.+.+ ++.|-++++. .++. +|..|+-+|+.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~--~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY--VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC--HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH--HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 33 46799999999998 6788888888999888888888888888766 5888888854 4455 68888777764
No 216
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=5.1 Score=48.28 Aligned_cols=231 Identities=17% Similarity=0.165 Sum_probs=133.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhCchhHHHHHHh--CCHHHHHHhhcCCCHHHHHHHHHHhhccccccc--cHHHHHhcCcHH
Q 046850 405 MGSPEIQSQAAYELRLLAKTGMDNRRIIAEA--GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN--NKILIMAAGAID 480 (686)
Q Consensus 405 s~~~~~q~~al~~L~~La~~~~~~r~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~--~k~~i~~~g~l~ 480 (686)
+.+..+|.++-+.|..++.. +.......+. ..-..|..-.++.+..++..++.+|..|-.... ....+.. .|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence 44788999999999998874 2222222110 122233334444556666666666655543322 2333332 245
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhcc----CchhhhHhhcCCCcHHHHHHhcccC----ChHHHHHHHHHHHHhcCCCC
Q 046850 481 SIIEVLQSGKTMEARENAAATIFSLSM----IDDCKVMIGGRPRAIPALVGLLREG----TTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 481 ~Lv~lL~~~~~~e~~~~aa~~L~~Ls~----~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~ 552 (686)
-++-.++.. +...|.+|..+|..+.. .++.... . ...|..++..+..+ .+..+...+.++..+.....
T Consensus 742 EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 742 EVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 555555666 88999999999999973 1111111 0 12455555555443 33333333555555544322
Q ss_pred -cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 553 -NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 553 -~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
.-....=.+++..+.-.|.+.++.++..|++.+..++. .|+..-.-..... +|.+..+++.+....+...-..|-.|
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~L-L~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEEL-LPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 11111223345555666688899999999999999875 4442222111123 78888888878888888888888888
Q ss_pred hccChHHHHHHHH
Q 046850 631 CKDGGEEVARRLL 643 (686)
Q Consensus 631 ~~~~~~~~~~~l~ 643 (686)
+..-+.+..+.+.
T Consensus 897 irkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 897 IRKFGAEELESFL 909 (1176)
T ss_pred HHHhCHHHHHhhC
Confidence 8766555555544
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.24 E-value=4.3 Score=48.95 Aligned_cols=269 Identities=15% Similarity=0.097 Sum_probs=148.3
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHHHHHHHhhCc-hhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc----ccc
Q 046850 396 AEFLVGKLAM-GSPEIQSQAAYELRLLAKTGM-DNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF----DNN 469 (686)
Q Consensus 396 i~~Lv~~L~s-~~~~~q~~al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~----~~~ 469 (686)
+..+...+.+ ...+.+..|+..|..++..-. +++ -.-++|.++.++.....++|..|+.+|..+-.. ...
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3344344432 246778899999999986321 222 235899999999999999999999888765422 122
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC------------------chhhhHhhc----------CCCc
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI------------------DDCKVMIGG----------RPRA 521 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~------------------~~~~~~i~~----------~~g~ 521 (686)
-..|.-.-.+|.|-.++.+....-+|..-|..|..|+.. +.+-..... ..++
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 334445557888888888742444455444444444321 111100000 0011
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhC
Q 046850 522 IPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKC 601 (686)
Q Consensus 522 i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~ 601 (686)
=...+.+|.+..+-++..-+..|.-||..=.-.. ...=+++.|+.+|.+.+..++-.-..-+.-+|..-.-| . ++.
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r-s-~se 655 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR-S-VSE 655 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee-e-HHH
Confidence 2233344555555666666666666653210000 00113566777777766555533322333222211111 0 122
Q ss_pred CCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 602 RVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 602 ~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
.. +|.|.+-|..+.+.+-..|+++|..||..+- -....+.+ +++....++-..+.-+|+.+..++...-+.
T Consensus 656 yl-lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l-l~K~~v~~---i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 656 YL-LPLLQQGLTDGEEAVIVSALGSLSILIKLGL-LRKPAVKD---ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HH-HHHHHHhccCcchhhHHHHHHHHHHHHHhcc-cchHHHHH---HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 33 7888887877888888999999998987642 11122222 244455566677788888887766655443
No 218
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.15 E-value=0.14 Score=38.11 Aligned_cols=45 Identities=27% Similarity=0.507 Sum_probs=23.6
Q ss_pred CcccccCcccCcCceEc-cCccc--ccHHhH-HHHHhhCCCCCCCCCcc
Q 046850 283 EFRCPISLDLMRDPVIV-ASGHT--YDRNSI-AQWINSGHHTCPKSGQR 327 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~-~cght--~cr~ci-~~w~~~~~~~CP~c~~~ 327 (686)
.+.||++...|.-|+-. .|.|. |+...+ +.....+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999954 89986 555333 33333356789999763
No 219
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.15 E-value=0.089 Score=53.64 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=35.0
Q ss_pred ccccCcccCc--CceE--ccCcccccHHhHHHHHhhCCCCCCCCCccccCCC
Q 046850 285 RCPISLDLMR--DPVI--VASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA 332 (686)
Q Consensus 285 ~Cpic~~~m~--dPv~--~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~ 332 (686)
.||+|.+.|. |--. .+||...|+.|.......-+..||.||.......
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 4999999884 3222 3788888999976655555678999998765543
No 220
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.15 E-value=2.3 Score=49.30 Aligned_cols=214 Identities=17% Similarity=0.116 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHH
Q 046850 447 SHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALV 526 (686)
Q Consensus 447 s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 526 (686)
++.+.++..|+..|..+......+..+...+++...+..|++. +.-+--+|...+..||.. .. ...+|-|.
T Consensus 738 d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y~-e~il~dL~ 808 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------YP-EDILPDLS 808 (982)
T ss_pred CCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------cc-hhhHHHHH
Confidence 3445678888888888887666677788889999999999998 777888888877777654 22 55677777
Q ss_pred H-hcccCC---hHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhc--HHHHH
Q 046850 527 G-LLREGT---TAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREG--LEEIR 599 (686)
Q Consensus 527 ~-lL~~~~---~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~--~~~i~ 599 (686)
+ ..+..+ ++.+...-.|+.++....+ -..+.. +-.+...+..+.+++...+..+++.+++||.-..+ ...+.
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 6 332211 2333333466666654332 222211 13444555555667777788899999999863322 22222
Q ss_pred hCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHcC-CCChHHHHHHHhcC-CHHHHHHHHHHHHH
Q 046850 600 KCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLIN-PRSIPSLQSLTTDG-SLKARRKADALLRL 673 (686)
Q Consensus 600 ~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~-~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~ 673 (686)
+ . +..++.+.+. ++.-.|..|+.++..+-...+.+....+..- -.....+....... ++.+|-.|+..+.-
T Consensus 888 e--v-~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 888 E--V-LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred H--H-HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 2 2 4555555554 7888999999998888776555443322110 11345555555555 44455555544433
No 221
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.15 E-value=31 Score=41.06 Aligned_cols=211 Identities=18% Similarity=0.137 Sum_probs=122.2
Q ss_pred hhhHHHHHHHhhc-----CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc----CCC----HHHHHHHHHH
Q 046850 393 KMTAEFLVGKLAM-----GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS----SHD----PRIQENAVTA 459 (686)
Q Consensus 393 ~~~i~~Lv~~L~s-----~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~----s~~----~~~~~~A~~a 459 (686)
.+.+..|+..|.+ ++.+.-...+..|+..++ -..||..+.+.|+++.|+..|. .+. ..+.+.-+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3566777777764 334445556777777777 5899999999999999998774 333 5666766666
Q ss_pred hhccccccccHHH-H----Hhc--------CcHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCchhhhH-hhcCCCcH
Q 046850 460 LLNLSIFDNNKIL-I----MAA--------GAIDSIIEVLQSGK---TMEARENAAATIFSLSMIDDCKVM-IGGRPRAI 522 (686)
Q Consensus 460 L~nLs~~~~~k~~-i----~~~--------g~l~~Lv~lL~~~~---~~e~~~~aa~~L~~Ls~~~~~~~~-i~~~~g~i 522 (686)
+.-|......... . ... ..+..+++.+.++. +..+....+.+|-+|+..++.+.. +++ .+
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---~F 271 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---HF 271 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---HH
Confidence 6555433221000 0 111 23666777776542 578889999999999988754332 222 12
Q ss_pred HHHHHhcccC---ChHHHHHHHHHHHHhcC----CC---CcHHHHHHcCcHHHHHHHhcCC--------Cchh-------
Q 046850 523 PALVGLLREG---TTAGKKDAATALFNLAV----YN---ANKASVVVAGAVPLLIELLMDD--------KAGI------- 577 (686)
Q Consensus 523 ~~Lv~lL~~~---~~~~~~~Al~aL~nLs~----~~---~~~~~iv~~G~v~~Ll~lL~~~--------~~~v------- 577 (686)
.+.+++=.-+ +++- ...+..++.++. +. .-|..+++.|++...++.|... ++.+
T Consensus 272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 2222221111 1111 122444444442 22 2478889999999999988432 1222
Q ss_pred -HHHHHHHHHHHhCChhcHHHHHhCCCChHHHH
Q 046850 578 -TDDALAVLALLLGCREGLEEIRKCRVLVPLLI 609 (686)
Q Consensus 578 -~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv 609 (686)
...++.+|.-||......+.++..+. ++.+-
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~~~~~~-l~~lH 382 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLLIAEQL-LPLLH 382 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHhhH-HHHHH
Confidence 33466677777765444444455555 54443
No 222
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=0.1 Score=51.03 Aligned_cols=38 Identities=34% Similarity=0.583 Sum_probs=33.4
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhh
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS 316 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~ 316 (686)
.+-+.-.|.+|++..+|||+.+-||.|||.||.+++-.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 34555688999999999999999999999999999875
No 223
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.13 E-value=5.8 Score=38.13 Aligned_cols=92 Identities=23% Similarity=0.243 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCc-HHHHHHH
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGA-IDSIIEV 485 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~-l~~Lv~l 485 (686)
++.++..++..+..++...+..-+ ..+|.+...|.++++.++..|+.+|..|...+--|. .|. +..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 467888899999998875543222 357899999999999999999999999976432221 133 3777888
Q ss_pred HcCCCCHHHHHHHHHHHHHhccC
Q 046850 486 LQSGKTMEARENAAATIFSLSMI 508 (686)
Q Consensus 486 L~~~~~~e~~~~aa~~L~~Ls~~ 508 (686)
+.+. +.+++..|...+..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999776
No 224
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=17 Score=41.66 Aligned_cols=255 Identities=15% Similarity=0.176 Sum_probs=146.5
Q ss_pred HHhhcCC--HHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc--HHHHHhc
Q 046850 401 GKLAMGS--PEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN--KILIMAA 476 (686)
Q Consensus 401 ~~L~s~~--~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~ 476 (686)
+.|.|++ .-++..|+-+|..|-+.+++ .+--.+-...++.+|...+-.+...+...+..|++..+. +..+..+
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~a 229 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLA 229 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHH
Confidence 5566553 23445555555555554443 222235678899999988888877787777777765433 3322221
Q ss_pred -CcHHHHHHHHcCC---------CCHHHHHHHHHHHHHhccCch--hhhHhhcCCCcHHHHHHhcccC----Ch---HHH
Q 046850 477 -GAIDSIIEVLQSG---------KTMEARENAAATIFSLSMIDD--CKVMIGGRPRAIPALVGLLREG----TT---AGK 537 (686)
Q Consensus 477 -g~l~~Lv~lL~~~---------~~~e~~~~aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~----~~---~~~ 537 (686)
+-+..++..-... +.+=.....+++|.++-..++ .+..+.+ ++..++...+.. +. ..+
T Consensus 230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e---vl~~iLnk~~~~~~~k~vq~~na~ 306 (938)
T KOG1077|consen 230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE---VLERILNKAQEPPKSKKVQHSNAK 306 (938)
T ss_pred HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH---HHHHHHhccccCccccchHhhhhH
Confidence 2222222222111 133456667777777743332 3444433 555555555421 11 122
Q ss_pred HHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-C
Q 046850 538 KDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-G 615 (686)
Q Consensus 538 ~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~ 615 (686)
...+--..+|+.+-+ ....+.+ ++..|-++|.+....++-.|+..+..||.+.....++-.+ ...++..|+. .
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkter 381 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhcccc
Confidence 222333335554433 3333332 5777888888888899999999999999876666665543 3567777774 6
Q ss_pred ChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 616 SAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 616 s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
+..++..|+..|..+|-.++ + ..+ +.-|+..+.+-++..|+...-=..++.
T Consensus 382 DvSirrravDLLY~mcD~~N--a-k~I------V~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSN--A-KQI------VAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred chHHHHHHHHHHHHHhchhh--H-HHH------HHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 77899999999999997643 2 222 334555566667666665444334443
No 225
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.96 E-value=0.091 Score=39.29 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=36.7
Q ss_pred CCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 282 DEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
.+..|-.|...-...++++|||-.|+.|..-+ .-.-||.|+.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 34567788888788888999999999996544 356799999987543
No 226
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.90 E-value=3.1 Score=45.17 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=115.3
Q ss_pred HHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc----ccHH--------HHHhcCcHH
Q 046850 413 QAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD----NNKI--------LIMAAGAID 480 (686)
Q Consensus 413 ~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~----~~k~--------~i~~~g~l~ 480 (686)
.|++.|-.+....+..-..+.+.|++..++..|..+-..+.+. .- +-..+. +.+. ...+.+.++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK 78 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NK--NEEAGSGIPPEYKESSVDGYSISYQRQQLLK 78 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--cc--ccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence 4677777777766677778888999999999886433322221 00 111000 0011 111223344
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhcc-Cchhhh---HhhcCCCcHHHHHHhcccCC---hHHHHHHHHHHHHhcCCCC-
Q 046850 481 SIIEVLQSGKTMEARENAAATIFSLSM-IDDCKV---MIGGRPRAIPALVGLLREGT---TAGKKDAATALFNLAVYNA- 552 (686)
Q Consensus 481 ~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~---~i~~~~g~i~~Lv~lL~~~~---~~~~~~Al~aL~nLs~~~~- 552 (686)
.|++++. .+.. ...... .+.+.......|...+.+.. +.+...|+..+..+..+++
T Consensus 79 ~lLk~l~----------------~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT 142 (379)
T PF06025_consen 79 SLLKFLS----------------HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPT 142 (379)
T ss_pred HHHHHHH----------------HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCc
Confidence 4433332 2222 111111 12221345566666776654 5788889999999988877
Q ss_pred cHHHHHHcCcHHHHHHHhc-C---CCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc
Q 046850 553 NKASVVVAGAVPLLIELLM-D---DKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~-~---~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~ 614 (686)
.-..+.++|+++.+++.+. . ++.++....-.+|..||-+..|.+.+.+.+. ++.+++++.+
T Consensus 143 ~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~-l~~~f~if~s 207 (379)
T PF06025_consen 143 SFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNP-LDKLFEIFTS 207 (379)
T ss_pred hhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcCh-HHHHHHHhCC
Confidence 5677778999999999997 4 3556666666788889999999999999998 9999998865
No 227
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.78 E-value=14 Score=41.40 Aligned_cols=230 Identities=14% Similarity=0.152 Sum_probs=137.1
Q ss_pred HHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCc
Q 046850 442 VTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRA 521 (686)
Q Consensus 442 v~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~ 521 (686)
+.-|.+..+.....|..++..++.-+-.- -.-.|.+..++.....+.....+..+..++.+.+........+.. .++
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~--~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~-sN~ 176 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPN--SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM-SNV 176 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCcc--ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH-hhH
Confidence 45667777888788888887776432100 001244555555555555677899999999999988766555544 443
Q ss_pred HH-HHH-HhcccCC-hHHHHHHHHHHHH-hcCCCCcHHHHHHcC-cHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcH
Q 046850 522 IP-ALV-GLLREGT-TAGKKDAATALFN-LAVYNANKASVVVAG-AVPLLIELLMDDKAGITDDALAVLALLLG-CREGL 595 (686)
Q Consensus 522 i~-~Lv-~lL~~~~-~~~~~~Al~aL~n-Ls~~~~~~~~iv~~G-~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~ 595 (686)
|- .++ --++++. ..++..|+++|.+ |-...+|-..=-+.+ .++.+++.-..++.+++..|.++|..+-. +-.-.
T Consensus 177 il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm 256 (858)
T COG5215 177 ILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFM 256 (858)
T ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222 2344443 5888899999998 433222111111111 12333444456788899999999988864 22222
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHc---------------CCCChHHHHHHHhcCC
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLI---------------NPRSIPSLQSLTTDGS 660 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~---------------~~g~i~~L~~Ll~~~~ 660 (686)
+.+.+... .......+.+.++.+.-.|+.....+|.... +..-.... -..++|.|+.|+.+.+
T Consensus 257 ~~ymE~aL-~alt~~~mks~nd~va~qavEfWsticeEei-d~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ 334 (858)
T COG5215 257 QSYMENAL-AALTGRFMKSQNDEVAIQAVEFWSTICEEEI-DGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQG 334 (858)
T ss_pred HHHHHHHH-HHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-hhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcC
Confidence 23333222 4455567888899999999999878887431 11111110 0226899999987732
Q ss_pred H-------HHHHHHHHHHHHHHh
Q 046850 661 L-------KARRKADALLRLLNR 676 (686)
Q Consensus 661 ~-------~~k~~A~~lL~~l~~ 676 (686)
+ .....|...|+++..
T Consensus 335 ed~~~DdWn~smaA~sCLqlfaq 357 (858)
T COG5215 335 EDYYGDDWNPSMAASSCLQLFAQ 357 (858)
T ss_pred CCccccccchhhhHHHHHHHHHH
Confidence 1 256677778887744
No 228
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.098 Score=53.71 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=40.2
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
.++-.||||-.--...|+.+|||.-|..||.+.+.+ ...|-.|...+
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 467899999888888888999999999999999986 77788886544
No 229
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.71 E-value=0.07 Score=61.31 Aligned_cols=49 Identities=16% Similarity=0.501 Sum_probs=37.2
Q ss_pred CCCcccccCcccCc--C---ceE--ccCcccccHHhHHHHHhh-CCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMR--D---PVI--VASGHTYDRNSIAQWINS-GHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~--d---Pv~--~~cght~cr~ci~~w~~~-~~~~CP~c~~~l~ 329 (686)
...-.|+||-.++. | |-- -+|.|-|-..|+-+||+. ++.+||.||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34457999987764 2 322 278899999999999997 5789999996553
No 230
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=7.6 Score=44.84 Aligned_cols=260 Identities=20% Similarity=0.213 Sum_probs=138.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccH---
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK--- 470 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k--- 470 (686)
...+++-..|.+...-+..+|++.+..+...+ .|. +. -++..|-.+++++.+.+|-.|+.+|..++.-....
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SRE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 45677777788888889999999998887533 222 21 27778888999999999999999998887432221
Q ss_pred -----HHHH-hc---CcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc--CchhhhHhhc------------CCCcHHHHHH
Q 046850 471 -----ILIM-AA---GAIDSIIEVLQSGKTMEARENAAATIFSLSM--IDDCKVMIGG------------RPRAIPALVG 527 (686)
Q Consensus 471 -----~~i~-~~---g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~--~~~~~~~i~~------------~~g~i~~Lv~ 527 (686)
+.++ .. -+...+..+|+.| +.+........+.+... .++++..+.+ ..+.+..|..
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 1111 11 2344556667776 44433333333332211 1122222211 0223334444
Q ss_pred hccc-CChHHHHHHHHHHHHhcC-CCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCC
Q 046850 528 LLRE-GTTAGKKDAATALFNLAV-YNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVL 604 (686)
Q Consensus 528 lL~~-~~~~~~~~Al~aL~nLs~-~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~ 604 (686)
+|++ |.-+-+.....++..+.. +++.+.. ++..|...+.+. ....-+..+|..|.. .|. +..-..-
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~---a~~Psky- 467 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEGPK---APNPSKY- 467 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccCCC---CCCcchh-
Confidence 4433 222444444444444443 2222222 222333333221 222333444444422 000 0000011
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+..+...+.-.+..++-.|+.+|.++.... +.. . ..+...|.+.+.+.++.+|..|...|+.+..-
T Consensus 468 ir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~l----~--~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 468 IRFIYNRVILENAIVRAAAVSALAKFGAQD-VVL----L--PSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CCc----c--ccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 333333222256778889999998888442 111 1 23455677788888999999999999999843
No 231
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.50 E-value=17 Score=36.80 Aligned_cols=196 Identities=21% Similarity=0.222 Sum_probs=116.8
Q ss_pred hCCHHHHHHhhcC--CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhh
Q 046850 435 AGAIPFLVTLLSS--HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCK 512 (686)
Q Consensus 435 ~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~ 512 (686)
..++|.|+..|.. ..+-++..|..+|+++- + .+.++.+-+..+++ ..++++.+..++..+-..+...
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp-~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDP-CKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCC-ccccchHHHHHHHHHHHhhccc
Confidence 3578999988865 45677888999998875 2 22344444444444 6677777777777775433211
Q ss_pred h-----HhhcC-------CCcHHHHHHhcccCCh-HH-HHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhH
Q 046850 513 V-----MIGGR-------PRAIPALVGLLREGTT-AG-KKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGIT 578 (686)
Q Consensus 513 ~-----~i~~~-------~g~i~~Lv~lL~~~~~-~~-~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~ 578 (686)
. ..... .+-+..|-..|.+.+. -. +..|.-+|.|+-.. .+|..+.+-|..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchHHHH
Confidence 1 11110 1123334333433332 11 22233333333111 134555555666677777
Q ss_pred HHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHH
Q 046850 579 DDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLT 656 (686)
Q Consensus 579 ~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 656 (686)
..++.+++.|-. ... +|.|.+.|.. ..+.+|..|+.+|..++. +++ ++.|.+.+
T Consensus 205 hEvAfVfGQl~s----------~~a-i~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~~----------~~vL~e~~ 260 (289)
T KOG0567|consen 205 HEVAFVFGQLQS----------PAA-IPSLIKVLLDETEHPMVRHEAAEALGAIAD---EDC----------VEVLKEYL 260 (289)
T ss_pred HHHHHHHhhccc----------hhh-hHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HHH----------HHHHHHHc
Confidence 888888887733 123 8999997765 578899999999888774 344 55566677
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 046850 657 TDGSLKARRKADALLRLLN 675 (686)
Q Consensus 657 ~~~~~~~k~~A~~lL~~l~ 675 (686)
.+..+-+++.+...|.++.
T Consensus 261 ~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 261 GDEERVVRESCEVALDMLE 279 (289)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 7777778888777777653
No 232
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.13 Score=53.54 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=39.0
Q ss_pred CcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.-.|-||+.--+|-++++|-|. .|..|-+... -.+..||.||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 5689999999999999999995 6999977654 33788999999864
No 233
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.10 E-value=8.7 Score=38.87 Aligned_cols=195 Identities=19% Similarity=0.184 Sum_probs=122.0
Q ss_pred hhHHHHHHHhh--cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-H
Q 046850 394 MTAEFLVGKLA--MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-K 470 (686)
Q Consensus 394 ~~i~~Lv~~L~--s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k 470 (686)
..++.|+..|. +..+-++.+|..+|..+.. .+.++.+-++.+.+-..+++.+.-++..+-+-+.. +
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 36788888887 4456678888888877652 12455666666556666666555555444221110 0
Q ss_pred ----HHH--------HhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHH
Q 046850 471 ----ILI--------MAAGAIDSIIEVLQSGK-TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGK 537 (686)
Q Consensus 471 ----~~i--------~~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 537 (686)
... ...+-+..+-..|.+.. ..--|..|+..|.|+ +. ..+|..|++-+..++.-.+
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~-EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GT-EEAINALIDGLADDSALFR 204 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------Cc-HHHHHHHHHhcccchHHHH
Confidence 000 01112333433333331 222344444444433 23 4577888888888888888
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC--CCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcC
Q 046850 538 KDAATALFNLAVYNANKASVVVAGAVPLLIELLMD--DKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFG 615 (686)
Q Consensus 538 ~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~--~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~ 615 (686)
..++..++.|-+. -+++.|.+.|.+ .++-++-.|+.+|+.++... +++.|.+++...
T Consensus 205 hEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 205 HEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCc
Confidence 8899998887543 368888888844 57788889999999887622 278888888877
Q ss_pred ChHHHHHHHHHHHHhh
Q 046850 616 SAKGKENSITLLLGLC 631 (686)
Q Consensus 616 s~~~ke~A~~~L~~L~ 631 (686)
.+.+++.|..+|-.+-
T Consensus 264 ~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888875543
No 234
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.01 E-value=5.6 Score=43.35 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=118.2
Q ss_pred HHHhhcCCCHHHHHHHHHHhhcccccc----ccHHHHHhcCcHHHHHHHHcCC------CCHHHHHHHHHHHHHhccCch
Q 046850 441 LVTLLSSHDPRIQENAVTALLNLSIFD----NNKILIMAAGAIDSIIEVLQSG------KTMEARENAAATIFSLSMIDD 510 (686)
Q Consensus 441 Lv~lL~s~~~~~~~~A~~aL~nLs~~~----~~k~~i~~~g~l~~Lv~lL~~~------~~~e~~~~aa~~L~~Ls~~~~ 510 (686)
+..++...+.+-+-.|+-...++.+++ .||..+.++-+++-+-++|.++ .+.-.+..+.++|.-.|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 445566566655666666666666554 4478899997788888888653 245678889999999999986
Q ss_pred h--hhHhhcCCCcHHHHHHhcccC-Ch------HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCch-hHHH
Q 046850 511 C--KVMIGGRPRAIPALVGLLREG-TT------AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAG-ITDD 580 (686)
Q Consensus 511 ~--~~~i~~~~g~i~~Lv~lL~~~-~~------~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~-v~~~ 580 (686)
. ...+.. .||.|.+.+..+ ++ -+..++-.+|...+..+.+...++..|+++.+.++-.-++.. -...
T Consensus 96 lAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 96 LASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 4 334433 699999998654 23 378889999999999999999999999999999876433222 2233
Q ss_pred HHHHHHHHhC----ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 581 ALAVLALLLG----CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 581 al~~L~nLa~----~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
++.++..+.. .++.-..+.. ++..+.+=+.......|-.++.+|..+
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444443332 1222111111 133333333334555666667766644
No 235
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.84 E-value=2.6 Score=41.32 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhc---ccCC--hHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHH
Q 046850 494 ARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLL---REGT--TAGKKDAATALFNLAVYNA--NKASVVVAGAVPLL 566 (686)
Q Consensus 494 ~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~~~~--~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~L 566 (686)
-..+|...|.-+++.++.+..+.. ..+--.|...| ++.+ .-.+..+++.+..|..+++ ....+....+||.+
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 356788888888888888888766 44333333333 3322 3567789999999998876 56677788999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCC----C---ChHHHHH-HHhcCChHHHHHHHHHHHHhhccChHHH
Q 046850 567 IELLMDDKAGITDDALAVLALLLGCREGLEEIRKCR----V---LVPLLID-LLRFGSAKGKENSITLLLGLCKDGGEEV 638 (686)
Q Consensus 567 l~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~----~---~i~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~~~~~~ 638 (686)
++.+..++..-+..|+.++..+-.++.|-+.+.++- + .+..++. ++..++.+.-.+++.+-..||.+ +..
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~--p~a 272 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK--PHA 272 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC--HhH
Confidence 999988877788888999999988888866654421 1 1344443 44557888889999999999976 555
Q ss_pred HHHHH
Q 046850 639 ARRLL 643 (686)
Q Consensus 639 ~~~l~ 643 (686)
+..+.
T Consensus 273 R~lL~ 277 (315)
T COG5209 273 RALLS 277 (315)
T ss_pred HHHHh
Confidence 55543
No 236
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=90.79 E-value=0.21 Score=49.65 Aligned_cols=45 Identities=40% Similarity=0.575 Sum_probs=37.7
Q ss_pred CcccccCcccCcCceEc-cCcccccHHhHHHHHhh-CCCCCCCCCcc
Q 046850 283 EFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINS-GHHTCPKSGQR 327 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~-~~~~CP~c~~~ 327 (686)
+++||++.....+||+- .|||.|.|..|...... -...||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 57999999999999975 89999999999998764 23569986655
No 237
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.63 E-value=1.6 Score=42.04 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=78.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCch-hHHHHHHhCCHHHHHHhhcC---------CCHHHHHHHHHHhhcc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMD-NRRIIAEAGAIPFLVTLLSS---------HDPRIQENAVTALLNL 463 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~s---------~~~~~~~~A~~aL~nL 463 (686)
.....+++.|.++.... ..+..|+.....++. --..|++.||+..|+.+|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34567778887665443 556666655554443 34567788999999988853 4567888889999888
Q ss_pred ccccccHHHHHh-cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 046850 464 SIFDNNKILIMA-AGAIDSIIEVLQSGKTMEARENAAATIFSLS 506 (686)
Q Consensus 464 s~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls 506 (686)
..+..+...++. .+++..|+..|.++ +..++..++.+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 877777676665 69999999999998 9999999999998876
No 238
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.1 Score=41.38 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=33.6
Q ss_pred CcccccCcccCcC-ceEc-cCcccccHHhHHHHHhh--CCCCCCCCCccc
Q 046850 283 EFRCPISLDLMRD-PVIV-ASGHTYDRNSIAQWINS--GHHTCPKSGQRL 328 (686)
Q Consensus 283 ~~~Cpic~~~m~d-Pv~~-~cght~cr~ci~~w~~~--~~~~CP~c~~~l 328 (686)
+-.||-|.-.=.| |.+. -|.|.|-..||.+|+.. ....||.||+..
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 3356666544443 4444 79999999999999986 346899999864
No 239
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=9 Score=47.45 Aligned_cols=265 Identities=18% Similarity=0.172 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHH--hCCHHHHHHhhcCCCHHHHHHHHHHhhc-ccccccc-HHHHHhcCcHHHH
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAE--AGAIPFLVTLLSSHDPRIQENAVTALLN-LSIFDNN-KILIMAAGAIDSI 482 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~--~g~i~~Lv~lL~s~~~~~~~~A~~aL~n-Ls~~~~~-k~~i~~~g~l~~L 482 (686)
.+.-++.|+.-+..++... +..+.- ...||.|..+=..++..+|. |.+-++| |..+..+ .+... ..+++-|
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eL 1044 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDEL 1044 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHH
Confidence 3445666777777776632 222222 24678888877788888865 5555555 4443333 22222 2466777
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHH---HHHHHHHhcCCC-----CcH
Q 046850 483 IEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKD---AATALFNLAVYN-----ANK 554 (686)
Q Consensus 483 v~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~---Al~aL~nLs~~~-----~~~ 554 (686)
+.-|.+. ...+|+.++-+|..|-...++-...-.....+..+...+.+=...+++. ++.+|..||..- +.+
T Consensus 1045 L~~lt~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1045 LVNLTSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred HHhccch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 7777776 7889999999999998876544433221334555555544333344443 566666665321 112
Q ss_pred HHHHHcCcHHHHHHHhc-----CCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChH-----------
Q 046850 555 ASVVVAGAVPLLIELLM-----DDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAK----------- 618 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~-----~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~----------- 618 (686)
.+ .++..++.+|- +.-..++..++.++..|+.+..+.-. --.+.++|.|......-.+.
T Consensus 1124 ~~----~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk-P~~~~LIp~ll~~~s~lE~~vLnYls~r~~~ 1198 (1702)
T KOG0915|consen 1124 GK----EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK-PHFPKLIPLLLNAYSELEPQVLNYLSLRLIN 1198 (1702)
T ss_pred HH----HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc-chhhHHHHHHHHHccccchHHHHHHHHhhhh
Confidence 22 23444555542 33467888899999999875433110 01111244444444332221
Q ss_pred HHHHHHHHHHH-hhccCh----------HHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHhccccCCCCC
Q 046850 619 GKENSITLLLG-LCKDGG----------EEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNRCCSQSHNPV 685 (686)
Q Consensus 619 ~ke~A~~~L~~-L~~~~~----------~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~~~~~~~~~ 685 (686)
....|+..+.. .+.+++ .--...+.+ .+|.+.++++.+ .-..|-.++..+-++.......+.||
T Consensus 1199 ~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLee---lip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~ 1274 (1702)
T KOG0915|consen 1199 IETEALDTLRASAAKSSPMMETINKCINYIDISVLEE---LIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY 1274 (1702)
T ss_pred hHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHH---HHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc
Confidence 11122222211 111111 001122222 588899999887 44566666666666666666666665
No 240
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.35 E-value=0.11 Score=60.20 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=38.9
Q ss_pred cccccCcccCcCceEccCcccccHHhHHHHHhhCCC-CCCCCCccccC
Q 046850 284 FRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHH-TCPKSGQRLIH 330 (686)
Q Consensus 284 ~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~-~CP~c~~~l~~ 330 (686)
+.|++|.+ ..+|+++.|||.||+.|+.+.+..... .||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 888889999999999999998886433 59999876543
No 241
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.25 E-value=5.5 Score=43.95 Aligned_cols=130 Identities=23% Similarity=0.224 Sum_probs=85.1
Q ss_pred cHHHHHHhcccCChHHHHHHHHHHHHhcCC-CC--------cHHHHHHcC----cHHHHHHHhcCCCchhHHHHHHHHHH
Q 046850 521 AIPALVGLLREGTTAGKKDAATALFNLAVY-NA--------NKASVVVAG----AVPLLIELLMDDKAGITDDALAVLAL 587 (686)
Q Consensus 521 ~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~~--------~~~~iv~~G----~v~~Ll~lL~~~~~~v~~~al~~L~n 587 (686)
.+..|+++|.+ +++...|+.++.-|..+ ++ +...+.+.. ++|.|++.....+...+...+.+|.+
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 56677788766 56677777887777766 21 233334433 45666666666566688888999999
Q ss_pred HhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHH
Q 046850 588 LLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSL 655 (686)
Q Consensus 588 La~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 655 (686)
+..+-.....+-+.+.++|.|++-|...++.++..+..+|..+....++.....+. .++|.|+++
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~---sLI~~LL~l 414 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS---SLIPRLLKL 414 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH---HHHHHHHhc
Confidence 98744332233333334788888888788899999999999999887443333332 246665543
No 242
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.16 E-value=2.8 Score=42.63 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccc-cccHHHHHhcCcHHHHHHHHcC
Q 046850 411 QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIF-DNNKILIMAAGAIDSIIEVLQS 488 (686)
Q Consensus 411 q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~ 488 (686)
...|+..|.-++--++..|..+.+...+..++.+|. +..+.++..++.+|..+-.+ ..|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 445778888888779999999999999999999994 46789999999988776655 4556666677999999999997
Q ss_pred CC-CHHHHHHHHHHHHHhc
Q 046850 489 GK-TMEARENAAATIFSLS 506 (686)
Q Consensus 489 ~~-~~e~~~~aa~~L~~Ls 506 (686)
.. +.+++..++..|.-..
T Consensus 188 ~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccHHHhHHHHHHHHHHH
Confidence 64 6677777776665443
No 243
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.15 E-value=4 Score=45.00 Aligned_cols=185 Identities=22% Similarity=0.182 Sum_probs=116.8
Q ss_pred hHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccccccHHH
Q 046850 395 TAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL-SSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 395 ~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
.+..++.... ..++..+..++..+..+.-.-+..- .. ..++..+...+ ...+...+..++.++..+++ ..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----aL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITK-----AL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----HH
Confidence 5566666554 4457777788888877774311111 00 12233333333 33445555566655555542 23
Q ss_pred HHh-----cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-ch-------------hhhHhhcCCCcHHHHHHhcccCC
Q 046850 473 IMA-----AGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-DD-------------CKVMIGGRPRAIPALVGLLREGT 533 (686)
Q Consensus 473 i~~-----~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~-------------~~~~i~~~~g~i~~Lv~lL~~~~ 533 (686)
++. ...+..|+.+|.++ +....++..+.-|..+ ++ +|.++.. ..+|.|++..+..+
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEAD 336 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcC
Confidence 332 13466677888764 6788888888888766 32 2333322 36788888887777
Q ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHH-cCcHHHHHHHhcCCCchhHHHHHHHHHHHhCCh
Q 046850 534 TAGKKDAATALFNLAVYNANKASVVV-AGAVPLLIELLMDDKAGITDDALAVLALLLGCR 592 (686)
Q Consensus 534 ~~~~~~Al~aL~nLs~~~~~~~~iv~-~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~ 592 (686)
...+...+.||.++..+-+....+-+ ..++|.|++.|..++..++..++.+|..+....
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 77889999999999987663322222 357888999998888889999999999988644
No 244
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.08 E-value=17 Score=41.95 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=86.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHH
Q 046850 403 LAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSI 482 (686)
Q Consensus 403 L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~L 482 (686)
..+-+...|...+..|+..+..++.-+.. .|..+..+|++.++.+.-.|+.+|.+||.++..-.. +...+
T Consensus 215 i~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~ 284 (948)
T KOG1058|consen 215 IPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTY 284 (948)
T ss_pred ccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHH
Confidence 33446777888888888888766655554 467889999999999999999999999875443111 12333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 483 IEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 483 v~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
+.++....+-.++....--|..|. ..++..+ .|.+--++.+|..++-+++..++.....|++..
T Consensus 285 i~l~~kesdnnvklIvldrl~~l~--~~~~~il---~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 285 IDLLVKESDNNVKLIVLDRLSELK--ALHEKIL---QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred HHHHHhccCcchhhhhHHHHHHHh--hhhHHHH---HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 344333223234444444444443 1122222 345666677888888899999998888887654
No 245
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.00 E-value=0.39 Score=31.62 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.0
Q ss_pred cHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 521 AIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 521 ~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.+|.+++++.+++++++..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999998753
No 246
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.48 E-value=7.8 Score=40.62 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=112.9
Q ss_pred hHHHHH-HHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc--ccHH
Q 046850 395 TAEFLV-GKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD--NNKI 471 (686)
Q Consensus 395 ~i~~Lv-~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~--~~k~ 471 (686)
.+..|+ ..+.+.+..+|..|+.+|...+--+.+.-. ..++.+...+..++..++..|+.++..+...- ..-.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 444444 678889999999999999998875442221 24677888787789999999999998875321 1111
Q ss_pred -------HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC----ChHHHHHH
Q 046850 472 -------LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG----TTAGKKDA 540 (686)
Q Consensus 472 -------~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A 540 (686)
.......++.+.+.+.+. +.+++..|+..+..|-..+.... . ..++..|+-+.-++ +.+.+.--
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 122345778888899988 88999999999999876653322 1 33455554443332 34555555
Q ss_pred HHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC
Q 046850 541 ATALFNLAVYNANKASVVVAGAVPLLIELLMD 572 (686)
Q Consensus 541 l~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~ 572 (686)
...+-..+..+...+..+..+.++.+..+...
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 55555677777666777777777877776644
No 247
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.27 E-value=8.8 Score=45.19 Aligned_cols=262 Identities=16% Similarity=0.089 Sum_probs=143.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHh-hCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHh
Q 046850 397 EFLVGKLAMGSPEIQSQAAYELRLLAK-TGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMA 475 (686)
Q Consensus 397 ~~Lv~~L~s~~~~~q~~al~~L~~La~-~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 475 (686)
+.....++....+.+..++.-...++. .+...+..+.....+|.+-.+..+.+..++...+....+++---. +..-+
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti- 435 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI- 435 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc-
Confidence 344455554445555555554544443 233344556666678888888888888888877777766653222 11111
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 476 AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-CKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 476 ~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
.-.++.++..+++. ..+++.+....+.++-...+ ....... ...+|.++.+-.....+++...++.+..++....
T Consensus 436 ~~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-- 511 (759)
T KOG0211|consen 436 SELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-- 511 (759)
T ss_pred cccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--
Confidence 12455566667766 77888887776655533322 2333333 5577888888766678899999999888887554
Q ss_pred HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHH---HHHHHHHHhh
Q 046850 555 ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKE---NSITLLLGLC 631 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke---~A~~~L~~L~ 631 (686)
..+...-..+.+..-+.+....+++.|+..+..++..-. ... ..... ++.+..+...++-..|. .++..|..++
T Consensus 512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~-i~k~L~~~~q~~y~~R~t~l~si~~la~v~ 588 (759)
T KOG0211|consen 512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW-ARLEE-IPKLLAMDLQDNYLVRMTTLFSIHELAEVL 588 (759)
T ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch-hHHHh-hHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence 222222233333333444555778888888877765222 111 11112 44444433332222333 2333333333
Q ss_pred ccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 632 KDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 632 ~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
.. +-..+. ++|.+..+..+..+.+|-.++..|.-+.
T Consensus 589 g~--ei~~~~------Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 589 GQ--EITCED------LLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred cc--HHHHHH------HhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 22 211111 3666666666666666666666555543
No 248
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.27 E-value=8.9 Score=45.18 Aligned_cols=267 Identities=19% Similarity=0.185 Sum_probs=157.1
Q ss_pred hhhhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccH
Q 046850 392 VKMTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK 470 (686)
Q Consensus 392 ~~~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 470 (686)
.+..+..+...+- ...+.++..++.-+.++++.-.. .....+.+|.+..+...+...+++.|...+.++...-...
T Consensus 234 vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~ 310 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD 310 (759)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence 3444555555554 44677777778888888763322 5666789999999999888889999998888775332111
Q ss_pred HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 471 ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
. =......+.+++...++ +..++...+.....|+..=+. ..+. ..-+++...+++....+++..++.-..-++.+
T Consensus 311 ~-d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~--~~~~-~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 311 D-DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGP--SATR-TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred h-hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhcc--ccCc-ccchhhHHHHhcchhhhhhHHhhcchHHHhhh
Confidence 1 11234678888888888 888898888888887654332 3333 45677888888776666666666555555543
Q ss_pred C--CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 551 N--ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 551 ~--~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
- +....+....++|.+-.+..+.+..++...+.....++..-. +..-+ .-+.|.+...++...+.++.+....+.
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls 462 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI--SELLPLLIGNLKDEDPIVRLNLIDKLS 462 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc--cccChhhhhhcchhhHHHHHhhHHHHH
Confidence 2 345556666667887777777777777666666555542111 00000 011444555555555566666554433
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALL 671 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 671 (686)
.+-...+......+. ...+|.+.++......+.+....+.+
T Consensus 463 ~~~~v~~v~g~~~~s--~slLp~i~el~~d~~wRvr~ail~~i 503 (759)
T KOG0211|consen 463 LLEEVNDVIGISTVS--NSLLPAIVELAEDLLWRVRLAILEYI 503 (759)
T ss_pred HHHhccCcccchhhh--hhhhhhhhhhccchhHHHHHHHHHHH
Confidence 322221111112221 22355555555555455554444433
No 249
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.21 E-value=0.71 Score=41.00 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=56.3
Q ss_pred CcHHHHHHhc-ccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 046850 520 RAIPALVGLL-REGTTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLL 589 (686)
Q Consensus 520 g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa 589 (686)
.++..|+++| .+.++.+..-|+.=|+.++.+.+ .+..+-+.|+=..++.++.++++.++..|+.++..+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4788999999 44567888889999999998766 4555556788889999999999999999999998764
No 250
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=32 Score=41.40 Aligned_cols=220 Identities=17% Similarity=0.130 Sum_probs=133.9
Q ss_pred HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccccc
Q 046850 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 390 ~~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~ 468 (686)
+..+..+..|...|++.+..++..|++.+..++...+ + .+++ .+|..++.++.- ++...-..|+.+|..|+.-.-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 4455788889999999999999999999999998776 2 2322 356666775543 346666788888888875221
Q ss_pred cHHHHHhcCcHHHHHHHHcC----C---CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHH-----HhcccCChHH
Q 046850 469 NKILIMAAGAIDSIIEVLQS----G---KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALV-----GLLREGTTAG 536 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~lL~~----~---~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-----~lL~~~~~~~ 536 (686)
-..... ..+++.+++-|.- | ....+|..|+.++|.++...+.... .+++..|. ..+-+....+
T Consensus 413 Llps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l----~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 413 LLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL----KPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred cchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh----hHHHHHHHHHHHHHHhcCchhhH
Confidence 111111 1245555554431 1 1346889999999999876543321 12233222 2334556678
Q ss_pred HHHHHHHHHHhcCCCCcH--------------------------HHHHH-cCcHHHHHHHhc-----CCCchhHHHHHHH
Q 046850 537 KKDAATALFNLAVYNANK--------------------------ASVVV-AGAVPLLIELLM-----DDKAGITDDALAV 584 (686)
Q Consensus 537 ~~~Al~aL~nLs~~~~~~--------------------------~~iv~-~G~v~~Ll~lL~-----~~~~~v~~~al~~ 584 (686)
+..|..|+.-.....+|. ..+.. .|...++++-|. +=+..+++.++.+
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 888888888665443322 11111 244555555552 2378899999999
Q ss_pred HHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHH
Q 046850 585 LALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKEN 622 (686)
Q Consensus 585 L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~ 622 (686)
|.+|+.... ....... +|.|+....+.+...+.-
T Consensus 568 L~~Ls~~~p---k~~a~~~-L~~lld~~ls~~~~~r~g 601 (1133)
T KOG1943|consen 568 LHKLSLTEP---KYLADYV-LPPLLDSTLSKDASMRHG 601 (1133)
T ss_pred HHHHHHhhH---Hhhcccc-hhhhhhhhcCCChHHhhh
Confidence 999886321 2334455 677777665566655553
No 251
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.96 E-value=2 Score=42.11 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-----CCHHHHHHHHHHhhcccccccc--HHHHHhcCcHHHH
Q 046850 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-----HDPRIQENAVTALLNLSIFDNN--KILIMAAGAIDSI 482 (686)
Q Consensus 410 ~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~L 482 (686)
-...|+..|.-++. .++.|..+.++.+--.+-.+|.. +..-++..++.+++.|..++.. -..+....++|..
T Consensus 116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34567777777777 78999999988754444455542 3455778889999999887654 4455567899999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhhhHh-------hcCCCcHHHHHH-hcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 483 IEVLQSGKTMEARENAAATIFSLSMIDDCKVMI-------GGRPRAIPALVG-LLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 483 v~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i-------~~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
++++..| ++-.+..|+.++..+-.+|..-..+ .....++..++. +.+.+..+..+.++.+-..||..+..|
T Consensus 195 LrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR 273 (315)
T COG5209 195 LRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHAR 273 (315)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHH
Confidence 9999999 8777888888887777766422222 111223333333 234567789999999888888877655
Q ss_pred HHH
Q 046850 555 ASV 557 (686)
Q Consensus 555 ~~i 557 (686)
..+
T Consensus 274 ~lL 276 (315)
T COG5209 274 ALL 276 (315)
T ss_pred HHH
Confidence 443
No 252
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=0.21 Score=55.30 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=33.8
Q ss_pred CCCCCcccccCcccC----cCceEccCcccccHHhHHHHHhhCCCCCC
Q 046850 279 NIPDEFRCPISLDLM----RDPVIVASGHTYDRNSIAQWINSGHHTCP 322 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m----~dPv~~~cght~cr~ci~~w~~~~~~~CP 322 (686)
.+-+-+.|+||...| ..||.+-||||.|+.|.+.-.+ .+||
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 455678999997766 4799999999999999998875 4677
No 253
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=88.72 E-value=7.7 Score=43.99 Aligned_cols=165 Identities=20% Similarity=0.147 Sum_probs=107.3
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHH---hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhc-
Q 046850 401 GKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAE---AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAA- 476 (686)
Q Consensus 401 ~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~---~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~- 476 (686)
..+-.-+.+.+.-|+.+||.+.++..-+-..+-. +..+..++..+. .++.-+..++++|.|+-.+..++..+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~ 629 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL 629 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4444567888999999999999876655554442 235556666555 66788889999999999887777766654
Q ss_pred -CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhccc-----CChHHHHHHHHHHHHhc
Q 046850 477 -GAIDSIIEVLQSGKTMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLLRE-----GTTAGKKDAATALFNLA 548 (686)
Q Consensus 477 -g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~Al~aL~nLs 548 (686)
-.+.+++.. +...+..++...+....|++..- .+-+ .+..+.|..++.. .+-+....++.||.+|+
T Consensus 630 ~~i~~~~~~~-~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 630 ESILDPVIEA-SSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHhhhhhhh-hcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 223333322 23325566666666667765421 1111 2344444444432 12356677899999999
Q ss_pred CCCCcHHHHHHcCcHHHHHHHhcC
Q 046850 549 VYNANKASVVVAGAVPLLIELLMD 572 (686)
Q Consensus 549 ~~~~~~~~iv~~G~v~~Ll~lL~~ 572 (686)
..+.+..++...--+..+++-+.+
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHH
Confidence 999888888887777777777744
No 254
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.46 E-value=20 Score=36.12 Aligned_cols=137 Identities=20% Similarity=0.150 Sum_probs=86.4
Q ss_pred HHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHh
Q 046850 397 EFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMA 475 (686)
Q Consensus 397 ~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 475 (686)
+.|+..+. ..+++.+...+..|-.++.++..+... ++..|..+...+.....--+...+..+-..++ +..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH---
Confidence 44454343 568899999999999999865122211 34556666666666665555555555543222 211
Q ss_pred cCcHHHHHHH--H------c-CCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhc-ccCChHHHHHHHHHHH
Q 046850 476 AGAIDSIIEV--L------Q-SGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLL-REGTTAGKKDAATALF 545 (686)
Q Consensus 476 ~g~l~~Lv~l--L------~-~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~ 545 (686)
+.+..++.. + . .....+.....+..+..++....+ .- ...++.+...| .+.++.++..|+.+|.
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g---~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HG---VDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hH---HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 344444433 1 1 111455666667888888877666 22 34788888888 6777889999999999
Q ss_pred Hhc
Q 046850 546 NLA 548 (686)
Q Consensus 546 nLs 548 (686)
.||
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 999
No 255
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.45 E-value=0.16 Score=49.51 Aligned_cols=47 Identities=23% Similarity=0.520 Sum_probs=35.8
Q ss_pred CcccccCcc-cCcCc-e-Ec---cCcccccHHhHHHHHhhCCCCCC--CCCcccc
Q 046850 283 EFRCPISLD-LMRDP-V-IV---ASGHTYDRNSIAQWINSGHHTCP--KSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~-~m~dP-v-~~---~cght~cr~ci~~w~~~~~~~CP--~c~~~l~ 329 (686)
+-.||+|.. ..-+| | ++ .|-|..|-+|+.+.|..|...|| -|++.+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 458999984 33333 3 22 49999999999999999999999 5766554
No 256
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.34 E-value=11 Score=42.03 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=104.6
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCH----HHHHHHHHHhhccccccccH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDP----RIQENAVTALLNLSIFDNNK 470 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~----~~~~~A~~aL~nLs~~~~~k 470 (686)
....+.+.+.+++...|..|+..|..++. +...-..++...++..|..+..+++. ++....++++..+-.+.-.-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 45677888999999999999999999998 55666667778888999999987654 44444555544442221111
Q ss_pred HHHHhcCcHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCchh-hhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 471 ILIMAAGAIDSIIEVLQSG-KTMEARENAAATIFSLSMIDDC-KVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~-~~~e~~~~aa~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
...+...++.....+.+-. .+..+...|...|-++...+.. +..+.+ .--+..|+..+...+.++...|...+-.|.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1111222333333333221 1455678889999999887764 445555 778999999999999988888888877776
Q ss_pred CCC
Q 046850 549 VYN 551 (686)
Q Consensus 549 ~~~ 551 (686)
...
T Consensus 242 ~~a 244 (713)
T KOG2999|consen 242 RKA 244 (713)
T ss_pred hhC
Confidence 543
No 257
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.23 E-value=0.49 Score=49.60 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=48.2
Q ss_pred cccccCcccC------cCceEccCcccccHHhHHHHHhhCCCCCCCCCccc--cC---CCCCCcHHHHHHHHHH
Q 046850 284 FRCPISLDLM------RDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRL--IH---MALIPNYTLKSLLHQW 346 (686)
Q Consensus 284 ~~Cpic~~~m------~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l--~~---~~l~~n~~l~~~i~~~ 346 (686)
+.|-||.+-+ .-|-++.|||++|..|+.+....+...||.||... +. ..+..|+.+...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3566776554 34667789999999999999888888899999884 22 2467888888888776
No 258
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=88.02 E-value=18 Score=39.09 Aligned_cols=229 Identities=20% Similarity=0.186 Sum_probs=129.8
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCH-HHHHHHHHHhhccccccccH
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDP-RIQENAVTALLNLSIFDNNK 470 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~-~~~~~A~~aL~nLs~~~~~k 470 (686)
..+..++..|. +.+...|+.++-.|..-+. ++..|..+...|.+..+++.+.. ++. ...-.++.++.-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 45677788887 3456788888888888777 78899999999999999998843 333 33344455556666665555
Q ss_pred HHHHhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc---------cCChHHH
Q 046850 471 ILIMAAGAIDSIIEVLQSGK----TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR---------EGTTAGK 537 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~ 537 (686)
..+...+.+..++.++.... ..... ..-=.+++. +. ...+..+.+++. ......+
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---~~~~~~lsk-------~~--~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD---SSRKKNLSK-------VQ--QKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh---hhhhhhhhH-------HH--HHHHHHHHHHHhccccccccCCcccccc
Confidence 55556667777788777110 00000 000000000 00 011111111110 1112334
Q ss_pred HHHHHHHHHhc------------C---CCCcHHHHHHcCcHHHHHHHhcC----C------------CchhHHHHHHHHH
Q 046850 538 KDAATALFNLA------------V---YNANKASVVVAGAVPLLIELLMD----D------------KAGITDDALAVLA 586 (686)
Q Consensus 538 ~~Al~aL~nLs------------~---~~~~~~~iv~~G~v~~Ll~lL~~----~------------~~~v~~~al~~L~ 586 (686)
.-|+.++-.++ . .+-.+..+...|++..++..+.+ . +......++.+|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 45555555553 1 11257778888999999988741 1 1234567888888
Q ss_pred HHhC-ChhcHHHHHhCCC-ChHHHHH-HHhc---CChHHHHHHHHHHHHhhccCh
Q 046850 587 LLLG-CREGLEEIRKCRV-LVPLLID-LLRF---GSAKGKENSITLLLGLCKDGG 635 (686)
Q Consensus 587 nLa~-~~~~~~~i~~~~~-~i~~Lv~-lL~~---~s~~~ke~A~~~L~~L~~~~~ 635 (686)
+.+. +.+++..+..... .++.+.. +++. ........++.++.|++.+++
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 8864 4445555544322 1333333 3332 223345788999999998763
No 259
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=87.79 E-value=0.59 Score=30.77 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSI 465 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~ 465 (686)
+|.++++++++++++|..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999998864
No 260
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=87.76 E-value=6.9 Score=44.74 Aligned_cols=254 Identities=16% Similarity=0.114 Sum_probs=150.8
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHH
Q 046850 401 GKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAID 480 (686)
Q Consensus 401 ~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~ 480 (686)
+.+...+.+.+..-...|..- .+.--+.++..-++|.|+..+.-++ .-...+..|..+...-.... ...+.++
T Consensus 261 eel~lks~~eK~~Ff~~L~~~---l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p 333 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDR---LDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRIIP 333 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchhh
Confidence 444555666665544444432 2233344555556777777666555 22344444444443322222 6678999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHc
Q 046850 481 SIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVA 560 (686)
Q Consensus 481 ~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~ 560 (686)
.|+++++.. +..+|..-..-+-... +.....+.. ..++|.+..-+.+.++.+++.++..+..|+..=.-+ .+..
T Consensus 334 ~l~kLF~~~-Dr~iR~~LL~~i~~~i--~~Lt~~~~~-d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~ 407 (690)
T KOG1243|consen 334 VLLKLFKSP-DRQIRLLLLQYIEKYI--DHLTKQILN-DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNG 407 (690)
T ss_pred hHHHHhcCc-chHHHHHHHHhHHHHh--hhcCHHhhc-chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcH
Confidence 999999998 7777765333222221 123334455 789999999999999999999999998887532211 1222
Q ss_pred CcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHH
Q 046850 561 GAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVAR 640 (686)
Q Consensus 561 G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 640 (686)
..+..+-++=.+.++.++.....+|..++.+-. +..+.+.++....+-+++.-...|..++.+++..+..-. ...
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~--~~~ 482 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD--QSE 482 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc--hhh
Confidence 223333333345567788877777777776422 222445434444455555556678888888877776532 212
Q ss_pred HHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 641 RLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 641 ~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
.- ..++|.+..+..+.+..+|..|...++.+-
T Consensus 483 va---~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 483 VA---NKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hh---hhccccccccccCcccchhhHHHHHHHHHH
Confidence 21 336888888888887777777766655543
No 261
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.69 E-value=0.49 Score=42.17 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=41.5
Q ss_pred CCcccccCcccCcCceEc----cCcccccHHhHHHHHhh--CCCCCCCCCccccCC
Q 046850 282 DEFRCPISLDLMRDPVIV----ASGHTYDRNSIAQWINS--GHHTCPKSGQRLIHM 331 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~----~cght~cr~ci~~w~~~--~~~~CP~c~~~l~~~ 331 (686)
.-+.|.||.+.-.|+-.+ .||-..|..|.-..|+. -+..||.|..++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 567999999998887766 79999999999888875 357899998877643
No 262
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=86.66 E-value=26 Score=37.72 Aligned_cols=227 Identities=12% Similarity=0.083 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC-----CHHHHHHHHHHhhcccccccc-HHH-HHhcCcH
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH-----DPRIQENAVTALLNLSIFDNN-KIL-IMAAGAI 479 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLs~~~~~-k~~-i~~~g~l 479 (686)
+.++..+|+++|.++..++...+..+.++.....+++.+... ...+...-+..|.-|+.-... |.+ +.+.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 346777899999999999999999999887777777655321 123344444555444433333 555 4577999
Q ss_pred HHHHHHHcCCC--------C------HHHHHHHHHHHHHhccCchhhhHhhc------CCCcHHHHHHhcccCC------
Q 046850 480 DSIIEVLQSGK--------T------MEARENAAATIFSLSMIDDCKVMIGG------RPRAIPALVGLLREGT------ 533 (686)
Q Consensus 480 ~~Lv~lL~~~~--------~------~e~~~~aa~~L~~Ls~~~~~~~~i~~------~~g~i~~Lv~lL~~~~------ 533 (686)
+.+...|.+.. + ......+..++||+.........+-. -.++...++-.+..++
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elh 269 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELH 269 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 99999987521 1 12234567778888765522111100 0111112211111110
Q ss_pred -------hHHHHHHHHHHHHhcCCCCcHHHHH--HcCcHHHHHHHhc---------CCCchhHHHHHHHHHHHhCChhcH
Q 046850 534 -------TAGKKDAATALFNLAVYNANKASVV--VAGAVPLLIELLM---------DDKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 534 -------~~~~~~Al~aL~nLs~~~~~~~~iv--~~G~v~~Ll~lL~---------~~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
+.+....+.++...-.+...-+.+- ...-+..+..+|. +...+.....+.+|..+|+.....
T Consensus 270 shav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~ 349 (532)
T KOG4464|consen 270 SHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVM 349 (532)
T ss_pred hccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHH
Confidence 1122222222221111111112121 1122444444442 124456677888888888877666
Q ss_pred HHHHhCCCChHHHHHHHhc-----------------CChHHHHHHHHHHHHhhccC
Q 046850 596 EEIRKCRVLVPLLIDLLRF-----------------GSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~-----------------~s~~~ke~A~~~L~~L~~~~ 634 (686)
...++..+ +|.|.++-+. ....+|.-|+..|..||..+
T Consensus 350 Rkylr~qV-LPPLrDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKes 404 (532)
T KOG4464|consen 350 RKYLRQQV-LPPLRDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKES 404 (532)
T ss_pred HHHHHHhc-CCchhhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcc
Confidence 66666666 7776654432 23345566666667777553
No 263
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=86.63 E-value=7 Score=39.77 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcC-CCCcHHHHHHcCcHHHHHHHhc-CCCchhHHHHHHHHHHH-hCChhcHHHHHhCCCChHHHHHH
Q 046850 535 AGKKDAATALFNLAV-YNANKASVVVAGAVPLLIELLM-DDKAGITDDALAVLALL-LGCREGLEEIRKCRVLVPLLIDL 611 (686)
Q Consensus 535 ~~~~~Al~aL~nLs~-~~~~~~~iv~~G~v~~Ll~lL~-~~~~~v~~~al~~L~nL-a~~~~~~~~i~~~~~~i~~Lv~l 611 (686)
.....|+..|..++. +++.+..+.+...+..++.+|. ...+.++..++.+|..+ ..++.+...+-+.+| +..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G-l~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNG-LSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC-HHHHHHH
Confidence 446678899999886 4557888888999999999994 45678888888877665 568889888889999 9999999
Q ss_pred Hhc--CChHHHHHHHHHHHHhhcc
Q 046850 612 LRF--GSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 612 L~~--~s~~~ke~A~~~L~~L~~~ 633 (686)
+++ .+..++-.++..|+-....
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 987 4567888999988776654
No 264
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.59 E-value=5.9 Score=47.85 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC----CCcH
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY----NANK 554 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~----~~~~ 554 (686)
+..+...++.=...+.+..|...|..||..-..-..+ ..++|.++.++.+...+++..|+.+|..+... +..-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 5555556555335688999999999999887666666 45899999999999999999999999877542 2223
Q ss_pred HHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhC
Q 046850 555 ASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLG 590 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~ 590 (686)
..+.-.=++|.|-.++.+ ....++-.-+..|+.||.
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 333333466777777766 333444444555655553
No 265
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.33 E-value=2.1 Score=49.99 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=99.7
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHH
Q 046850 477 GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKAS 556 (686)
Q Consensus 477 g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~ 556 (686)
.++|.+++..... +...+-+-..+|.++-.+-.....+-.....+|.|++.|.-.+..++..++.++.-+..-.+.-..
T Consensus 867 ~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 5788888888754 556677777777776554333333434456788888888888999989999888877655443322
Q ss_pred HHHcCcHHHHHHHhcCCC---chhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHH
Q 046850 557 VVVAGAVPLLIELLMDDK---AGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITL 626 (686)
Q Consensus 557 iv~~G~v~~Ll~lL~~~~---~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~ 626 (686)
---.-++|.++.+=.+++ ..+++.|+.+|..|.+ .|...-.-.+..+ +..|.+.|+.....+|+.|+.+
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~V-l~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLV-LRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHH-HHHhhhccCcHHHHHHHHHHHH
Confidence 222334555555434433 5688999999999998 5554444444455 7888888876666788888765
No 266
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.23 E-value=13 Score=43.59 Aligned_cols=178 Identities=19% Similarity=0.169 Sum_probs=110.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhc
Q 046850 397 EFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAA 476 (686)
Q Consensus 397 ~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~ 476 (686)
...+..+.++...++-.|+..|+.+.. +-+....+...+++...+..|++.|+-+--+|+..+.-|+.- ...
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e 801 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPE 801 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cch
Confidence 334455556667789999999999998 346666777789999999999999998888888766666532 334
Q ss_pred CcHHHHHHHHcCCC---CH-------HHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHH
Q 046850 477 GAIDSIIEVLQSGK---TM-------EARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFN 546 (686)
Q Consensus 477 g~l~~Lv~lL~~~~---~~-------e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 546 (686)
..++.+.+.-.+.. .. |+....+.++..|+.. ++. -.+..++...++++.+.+..++.++++
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~--y~~------~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK--YKA------VLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHH--HHH------HHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 55666665332210 11 3333333333333221 111 245566666776667789999999999
Q ss_pred hcCCCCcHHHHHHcCcHHHHHHHh-cCCCchhHHHHHHHHHHHhC
Q 046850 547 LAVYNANKASVVVAGAVPLLIELL-MDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 547 Ls~~~~~~~~iv~~G~v~~Ll~lL-~~~~~~v~~~al~~L~nLa~ 590 (686)
||.-...+..=.=..++..++.+. .+++..++..|+-++..+-.
T Consensus 874 Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 874 LCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 986443211112223344445544 34567778888888887754
No 267
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.17 E-value=0.7 Score=48.09 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQW 346 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 346 (686)
...+-+.||+|.+.+..|+.= .-||.-|..|-.+- ...||.|+.++.+ ..+.++...++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHhc
Confidence 346779999999999999843 67999999996532 5789999988763 3566676666554
No 268
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=0.5 Score=39.93 Aligned_cols=27 Identities=19% Similarity=0.720 Sum_probs=24.5
Q ss_pred cCcccccHHhHHHHHhhCCCCCCCCCcc
Q 046850 300 ASGHTYDRNSIAQWINSGHHTCPKSGQR 327 (686)
Q Consensus 300 ~cght~cr~ci~~w~~~~~~~CP~c~~~ 327 (686)
.|.|.|--.||.+|++. +..||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 79999999999999998 7889999765
No 269
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.97 E-value=9.7 Score=43.77 Aligned_cols=124 Identities=20% Similarity=0.133 Sum_probs=78.5
Q ss_pred CCHHHHHHh-hcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH
Q 046850 436 GAIPFLVTL-LSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM 514 (686)
Q Consensus 436 g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~ 514 (686)
++|..|+.+ .+..|.+++..|+.+|+-....+.+ .++..+++|...++.-+|..++-+|.--|....++..
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 356666665 5567888888888888877665443 4677788888877889999999999888777655554
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC-CC-cHHHHHHcCcHHHHHHHhcCCCch
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY-NA-NKASVVVAGAVPLLIELLMDDKAG 576 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~~-~~~~iv~~G~v~~Ll~lL~~~~~~ 576 (686)
| ..|-.|..+...-++.-|+-++.-+... .+ .+.++ .|+.+.+.+++.+.+.+
T Consensus 626 i-------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 626 I-------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred H-------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence 3 3333444444456777777777755432 22 22221 23344566666554433
No 270
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.93 E-value=11 Score=44.93 Aligned_cols=184 Identities=15% Similarity=0.099 Sum_probs=119.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHH-HHhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 397 EFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRII-AEAGAIPFLVTLL-SSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 397 ~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
+.+-..+.+.++..+.+|+..+........ .... ...|.+..++... ...|..+...|+..|.-++..-..-..=.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 444556668899999999999988776332 1111 1123344444433 34566777788888887775433323333
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-- 552 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-- 552 (686)
..++++.+++.+... ..+++..+..++-..+- .......++.+..+++++++..+..+...+.......+
T Consensus 334 ~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEK-KSELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 457788889888887 66666665555544332 11114567888889999999999987777766654332
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
+...-.-.++++.++....+.+..++..|..++..+-.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 33333445677778887788888999998888877643
No 271
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=85.90 E-value=37 Score=36.13 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=114.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHh-hCchhHHHHHHh-CC-HHHHHHhhcCC-----C--------HHHHHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAK-TGMDNRRIIAEA-GA-IPFLVTLLSSH-----D--------PRIQENAV 457 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~-~~~~~r~~i~~~-g~-i~~Lv~lL~s~-----~--------~~~~~~A~ 457 (686)
..++.+.+.|++.....+..+++.|..+.. .+......+... +. .+.+..++... + +.+|...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 457788888998888888899999998887 554554445443 33 45566666321 1 27888888
Q ss_pred HHhhcccccccc--HHHHHh-cCcHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccCc----hhhhHhhcCCCcHHHHHHhc
Q 046850 458 TALLNLSIFDNN--KILIMA-AGAIDSIIEVLQSGKTMEARENAAATIFSL-SMID----DCKVMIGGRPRAIPALVGLL 529 (686)
Q Consensus 458 ~aL~nLs~~~~~--k~~i~~-~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~L-s~~~----~~~~~i~~~~g~i~~Lv~lL 529 (686)
..+..+....+. +..+++ .+.+..+.+-|... +.++......+|..= ..++ ..|..+.. ..++..|+.+.
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly 213 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLY 213 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHh
Confidence 877776554433 666665 47788888888887 889999988888853 3332 45666777 77999999988
Q ss_pred ccCCh----HHHHHHHHHHHHhcCCCCc
Q 046850 530 REGTT----AGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 530 ~~~~~----~~~~~Al~aL~nLs~~~~~ 553 (686)
...++ .+...+-..|..+|.++.+
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 77666 8888899999999987653
No 272
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.89 E-value=0.63 Score=50.29 Aligned_cols=177 Identities=19% Similarity=0.136 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC----CCCcHHHHHH--cC-cHHHH
Q 046850 494 ARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV----YNANKASVVV--AG-AVPLL 566 (686)
Q Consensus 494 ~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~----~~~~~~~iv~--~G-~v~~L 566 (686)
++..|..++.-+..++..+...+-...+...+...+.+..-..+..++|++.|++. +-++...... .| .+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 44455555555555665555444335566666666666566788899999999974 2223111111 11 12222
Q ss_pred HHHh---cCCCchhHHHHHHHHHHHhCChh-----cHHHHHhCCCChHHH-HHHHhcCChHHHHHHHHHHHHhhccChHH
Q 046850 567 IELL---MDDKAGITDDALAVLALLLGCRE-----GLEEIRKCRVLVPLL-IDLLRFGSAKGKENSITLLLGLCKDGGEE 637 (686)
Q Consensus 567 l~lL---~~~~~~v~~~al~~L~nLa~~~~-----~~~~i~~~~~~i~~L-v~lL~~~s~~~ke~A~~~L~~L~~~~~~~ 637 (686)
++.- ...+..+...|.+.|+|+...-+ +-..+.+ +. +..+ -...-.+.-.+|=+|+.++.||..+..-.
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~-~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ES-IQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HH-HHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 2222 22466888999999999975221 1111111 11 1111 11222255678889999999999884211
Q ss_pred HHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHH
Q 046850 638 VARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRL 673 (686)
Q Consensus 638 ~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~ 673 (686)
. +..--..-+.+.|..|+.+. +-++|-.|+..|..
T Consensus 565 l-q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 565 L-QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred c-cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 1 11111022577888877766 77888777777654
No 273
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.73 E-value=20 Score=39.52 Aligned_cols=229 Identities=14% Similarity=-0.010 Sum_probs=127.6
Q ss_pred cCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHH
Q 046850 446 SSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPAL 525 (686)
Q Consensus 446 ~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~L 525 (686)
.+++..++..|+..|.|.+...+.+..-...-.+..++.-|.++.+.++.-.++.+|.-+...-.+......--.+.-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 45677889999999999988755544444445677777777777688888888888877765433333221112355567
Q ss_pred HHhcccCChHHHHHHHHHHHHhcCCCCcH--HHHHH--cCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHH---
Q 046850 526 VGLLREGTTAGKKDAATALFNLAVYNANK--ASVVV--AGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEI--- 598 (686)
Q Consensus 526 v~lL~~~~~~~~~~Al~aL~nLs~~~~~~--~~iv~--~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i--- 598 (686)
..++.+.+++.+..|..++..|+...... ..+.+ .+...+++-.|.++++.+.. |++.....|.-.-.+++.
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p~l~rke~~~~ 426 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYPNLVRKELYHL 426 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcCchhHHHHHHHH
Confidence 77888899999999999999888765533 33332 12223344445666655443 444444444322222211
Q ss_pred Hh---CCC-----------------ChHHHHHHHhc--------CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChH
Q 046850 599 RK---CRV-----------------LVPLLIDLLRF--------GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIP 650 (686)
Q Consensus 599 ~~---~~~-----------------~i~~Lv~lL~~--------~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~ 650 (686)
.+ .+. -.|.+..++.+ .-+.+++.|+..--++--+..+..... ..+.-+..
T Consensus 427 ~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~-~d~~qL~~ 505 (533)
T KOG2032|consen 427 FQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSS-ADGLQLRS 505 (533)
T ss_pred HhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHH-hhHHHHHH
Confidence 00 000 01222222111 123444444444333332221222111 11112456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 651 SLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 651 ~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
.|..+.++.-+.+++.|.+++..+..
T Consensus 506 ~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 506 SLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHccCCCchhHHHHHHHhhhHhh
Confidence 66777777788888888888877653
No 274
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=85.71 E-value=54 Score=38.88 Aligned_cols=222 Identities=17% Similarity=0.179 Sum_probs=136.3
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccccccHHHHH--hcCcHHHHH
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNNKILIM--AAGAIDSII 483 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~--~~g~l~~Lv 483 (686)
.+..-.+|.+.+...+.....+...+- -.....+..+. +..+-++..|+.++.-.+ ....+. ..++++.|.
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYC----KVKVLLSLQPMILDGLL 536 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhcc----CceeccccchHHHHHHH
Confidence 455555677777666554333332221 12223333333 334556666776665554 111122 246778888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc--cCChHHHHHHHHHHHHhcCCCCcHHHHHHcC
Q 046850 484 EVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR--EGTTAGKKDAATALFNLAVYNANKASVVVAG 561 (686)
Q Consensus 484 ~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G 561 (686)
++.... +.++....+.+|...+..+.-...-.. .-+.|.++.++. +++|.+...+-.++..|+....+..-+ ...
T Consensus 537 qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~ 613 (1005)
T KOG2274|consen 537 QLASKS-SDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QER 613 (1005)
T ss_pred HHcccc-cHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHH
Confidence 887777 889999999999999888755544444 567777777764 355666666666666665533222222 224
Q ss_pred cHHHHHHHhcCCC----chhHHHHHHHHHHHhCC-hhcHHHHHhCCCChHHHHH-HHhcCChHHHHHHHHHHHHhhccCh
Q 046850 562 AVPLLIELLMDDK----AGITDDALAVLALLLGC-REGLEEIRKCRVLVPLLID-LLRFGSAKGKENSITLLLGLCKDGG 635 (686)
Q Consensus 562 ~v~~Ll~lL~~~~----~~v~~~al~~L~nLa~~-~~~~~~i~~~~~~i~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~~~ 635 (686)
.+|.++..|..+. ..+..-++.+|..+.+. +..-...+-.-+ .|.+.+ .+++++...-.++..+|..+...+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~-FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA-FPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH-hHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 6899999996554 67778888888877652 222222222233 688887 4667888889999999999988774
Q ss_pred HHH
Q 046850 636 EEV 638 (686)
Q Consensus 636 ~~~ 638 (686)
+..
T Consensus 693 eq~ 695 (1005)
T KOG2274|consen 693 EQL 695 (1005)
T ss_pred HHH
Confidence 443
No 275
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.71 E-value=17 Score=41.23 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=77.7
Q ss_pred cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccc-cHHHHHhcCcHHHHH
Q 046850 405 MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN-NKILIMAAGAIDSII 483 (686)
Q Consensus 405 s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~l~~Lv 483 (686)
.++..+++-|+..|....++-++.... +|..++.+...+|..++..|+..|-.++.+.. ...++ ...|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence 467888889999999999888876664 57789999999999999999999999998743 34443 55688
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc---cCChHHHHHHHHHHH
Q 046850 484 EVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR---EGTTAGKKDAATALF 545 (686)
Q Consensus 484 ~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~Al~aL~ 545 (686)
++|.+. +......+-.+|..|-..+ . .+.+..|..-+. +++..+++.++..|.
T Consensus 103 QlL~td-d~~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTD-DPVELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT----HHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 888887 6555555555665554332 1 223333444443 556677777777664
No 276
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.64 E-value=0.59 Score=46.12 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=39.5
Q ss_pred CCCCcccccCcccCcCce----EccCcccccHHhHHHHHhhCCCCCCCCCccccCCC
Q 046850 280 IPDEFRCPISLDLMRDPV----IVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA 332 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv----~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~ 332 (686)
-...|.|||.+-.|..-. ..+|||.|.-..+.+.- ...|++|+......+
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDD 161 (293)
T ss_pred ccceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccC
Confidence 356899999999997654 33999999988877653 578999999886554
No 277
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=4.3 Score=41.89 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=98.3
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..+...+..|.+.+++....++..|+.|+..+++...-... ..|..+++-+++....+...|+.++..+...-.+. +
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i 164 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--I 164 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 45667788999999999999999999998866654443332 36777888888888999999999988886544332 2
Q ss_pred HhcCcHHHHHHHHc-CC--CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 474 MAAGAIDSIIEVLQ-SG--KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~-~~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
.+ .+..++..|. .+ .+.-+++.|-.+|..+..+-.. ..+++.|+..+.+.+++++..++....+..
T Consensus 165 ~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 165 DQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 22 2334433332 22 1556788888888777554211 345677777788888888888776655543
No 278
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.08 E-value=49 Score=33.98 Aligned_cols=219 Identities=16% Similarity=0.069 Sum_probs=126.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC--CCHHHHHHHHHHhhccccccccHHHHHhcC
Q 046850 400 VGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS--HDPRIQENAVTALLNLSIFDNNKILIMAAG 477 (686)
Q Consensus 400 v~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g 477 (686)
=..|.+.+...|.+|+..|......-+... ....-+..|+.+..+ .|......++.+|..|.....-.... ...
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HHH
Confidence 356778899999999999987766444222 122235666665543 56666666677766665332211111 111
Q ss_pred cHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-CChHHHHHHHHHHHHhcCCCCcHH
Q 046850 478 AIDSIIEVLQSG-KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-GTTAGKKDAATALFNLAVYNANKA 555 (686)
Q Consensus 478 ~l~~Lv~lL~~~-~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~~~~ 555 (686)
.+..+.+-..-+ .....|..+..+|..|.........-.. .+.+..+++++.. .+|+....+...+..+...-+.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence 222232222211 1456788888888888665422222122 4688888888865 4688888888888877654431
Q ss_pred HHHHcCcHHHHHHHhc--------CC--Cc-hh-HHH-HHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHH
Q 046850 556 SVVVAGAVPLLIELLM--------DD--KA-GI-TDD-ALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKEN 622 (686)
Q Consensus 556 ~iv~~G~v~~Ll~lL~--------~~--~~-~v-~~~-al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~ 622 (686)
....+-+.+.+. .+ ++ .+ .+. ..+....|+.++.-. .-. +|.|++-|.+.++.+|..
T Consensus 158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~-~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFA-FPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHH-HHHHHHHHcCCCcHHHHH
Confidence 233444444441 11 11 22 222 233334444444322 233 899999999999999999
Q ss_pred HHHHHHHhhccCh
Q 046850 623 SITLLLGLCKDGG 635 (686)
Q Consensus 623 A~~~L~~L~~~~~ 635 (686)
++.+|...+..-+
T Consensus 228 ~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 228 SLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHCC
Confidence 9999888765433
No 279
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=84.75 E-value=5.1 Score=32.37 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHc
Q 046850 578 TDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLI 644 (686)
Q Consensus 578 ~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~ 644 (686)
...|+.++++++.++.|...+.+.+. ++.++++... ....+|--|..+|..+++. .+..+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~i-v~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDI-VEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCH-HHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 35689999999999999998887788 9999998875 5677999999999888876 666666654
No 280
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.47 E-value=2.1 Score=46.53 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-----ch---hhhHhhcCC
Q 046850 449 DPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-----DD---CKVMIGGRP 519 (686)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-----~~---~~~~i~~~~ 519 (686)
+.-+...|..++..+..+... ...+.-.++...++..|.+. .-..|+.++|++.|++.. +. ....+..
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-- 480 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-- 480 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH--
Confidence 334667788888888877666 45555677888888888876 678899999999998631 11 2222211
Q ss_pred CcHHHHHHhcc---cCChHHHHHHHHHHHHhcCCCC----cHHHHHHcCcHHHHHHH-hcCCCchhHHHHHHHHHHHhCC
Q 046850 520 RAIPALVGLLR---EGTTAGKKDAATALFNLAVYNA----NKASVVVAGAVPLLIEL-LMDDKAGITDDALAVLALLLGC 591 (686)
Q Consensus 520 g~i~~Lv~lL~---~~~~~~~~~Al~aL~nLs~~~~----~~~~iv~~G~v~~Ll~l-L~~~~~~v~~~al~~L~nLa~~ 591 (686)
-.+..+..... -.+.+++.+|..+|.|+...-. --...+..|.+..+... .......++=+|+.+++||-.+
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 12333333322 2345889999999999975311 11111222333333222 2345678888999999999887
Q ss_pred hhcHHH-HHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhcc
Q 046850 592 REGLEE-IRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 592 ~~~~~~-i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~ 633 (686)
+.-.-+ .-=++...+.|..++.+ .+-+++-+|+++|..-...
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 654211 10112126777777766 5667888888887665543
No 281
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=84.44 E-value=56 Score=34.11 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=150.2
Q ss_pred HHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-H----HHHHhc-CcHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 046850 431 IIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-K----ILIMAA-GAIDSIIEVLQSGK-TMEARENAAATIF 503 (686)
Q Consensus 431 ~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k----~~i~~~-g~l~~Lv~lL~~~~-~~e~~~~aa~~L~ 503 (686)
.+.++|..+.|+..+...+-+.+..++.+..|+-.-.-+ + +.+... ..+..++.- .. ..+.-..+-..|.
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNMLR 150 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHHH
Confidence 345578899999999888888999998888887644322 2 222221 333333333 21 2455555666666
Q ss_pred HhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcCc----HHHHHHHhcCCCchhH
Q 046850 504 SLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVAGA----VPLLIELLMDDKAGIT 578 (686)
Q Consensus 504 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~----v~~Ll~lL~~~~~~v~ 578 (686)
.....+.....|.. +.........+..++-++..+|..+...+.+.+. ....+..... .+.--.++.+++--.+
T Consensus 151 Ecirhe~LakiiL~-s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 151 ECIRHEFLAKIILE-STNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHHhhHHHHHHHHc-chhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 66666666666766 7888888888888888999999999998876554 4455554433 3335556677788888
Q ss_pred HHHHHHHHHHhCChhcHHHH----HhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccCh--HHHHHHHHcCCCChHHH
Q 046850 579 DDALAVLALLLGCREGLEEI----RKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGG--EEVARRLLINPRSIPSL 652 (686)
Q Consensus 579 ~~al~~L~nLa~~~~~~~~i----~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--~~~~~~l~~~~g~i~~L 652 (686)
..++..|+.+-....+...+ -.... +..++.+|+..+..+|-.|..+-+-...+.. ..++..+.. . -+.|
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~en-LKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~-N--r~KL 305 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPEN-LKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVR-N--RPKL 305 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHH-HHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHh-C--cHHH
Confidence 99999999886544443332 22245 7888899999999999999999988887653 457777776 3 4555
Q ss_pred HHHHhc
Q 046850 653 QSLTTD 658 (686)
Q Consensus 653 ~~Ll~~ 658 (686)
++++..
T Consensus 306 l~~l~~ 311 (342)
T KOG1566|consen 306 LELLHD 311 (342)
T ss_pred HHHHHH
Confidence 555543
No 282
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=28 Score=41.92 Aligned_cols=150 Identities=19% Similarity=0.151 Sum_probs=97.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHh
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMI 515 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 515 (686)
+++..|+..|++.|..++=.|+.-++.++...+ ..++ ..++..+++++....+..+-..++-+|..|+...--....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 467788888899999999999999999886655 2222 2367777777766544666778899999998654222211
Q ss_pred hcCCCcHHHHHHhcccC--------ChHHHHHHHHHHHHhcCCCC-c-HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHH
Q 046850 516 GGRPRAIPALVGLLREG--------TTAGKKDAATALFNLAVYNA-N-KASVVVAGAVPLLIELLMDDKAGITDDALAVL 585 (686)
Q Consensus 516 ~~~~g~i~~Lv~lL~~~--------~~~~~~~Al~aL~nLs~~~~-~-~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L 585 (686)
. ..++|.++.-|.-+ ...++..|+.++|.++...+ + ...++..=+-..|...+.+++...+..|.+++
T Consensus 418 l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 418 L--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred H--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 1 23667776666432 23678889999998886433 2 22233322222334445677788888888877
Q ss_pred HHHhC
Q 046850 586 ALLLG 590 (686)
Q Consensus 586 ~nLa~ 590 (686)
....+
T Consensus 496 qE~VG 500 (1133)
T KOG1943|consen 496 QENVG 500 (1133)
T ss_pred HHHhc
Confidence 76543
No 283
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=30 Score=43.21 Aligned_cols=270 Identities=16% Similarity=0.131 Sum_probs=135.7
Q ss_pred HHhhhhHHHHHHHhh----cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 046850 390 DAVKMTAEFLVGKLA----MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSI 465 (686)
Q Consensus 390 ~~~~~~i~~Lv~~L~----s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~ 465 (686)
+..+.+.+.||..|- .++..+|.....+=..|..+....-.. .-..+..-|+.-|.+.-..+++.++.+|..|-.
T Consensus 990 ~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~-y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 990 EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE-YLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence 334556666665553 567777765444444454422211111 113455667777777889999999999999976
Q ss_pred ccccHHHHHhc--CcHHHHHHHHcCCCCHHHHH---HHHHHHHHhccCc-------hhhhHhhcCCCcHHHHHH--hccc
Q 046850 466 FDNNKILIMAA--GAIDSIIEVLQSGKTMEARE---NAAATIFSLSMID-------DCKVMIGGRPRAIPALVG--LLRE 531 (686)
Q Consensus 466 ~~~~k~~i~~~--g~l~~Lv~lL~~~~~~e~~~---~aa~~L~~Ls~~~-------~~~~~i~~~~g~i~~Lv~--lL~~ 531 (686)
..++ ..+.+. .....+..+.++- .+.+|+ .++.+|..|+..- ..+..+ ..++|.|++ ++ +
T Consensus 1069 g~~~-~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l---~~iLPfLl~~gim-s 1142 (1702)
T KOG0915|consen 1069 GRPF-DQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL---DIILPFLLDEGIM-S 1142 (1702)
T ss_pred CCCh-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH---HHHHHHHhccCcc-c
Confidence 6444 222221 2233344444433 444454 4555666554321 122222 225565553 22 4
Q ss_pred CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHH-----------HHHHHHH-HHhCChhcHHH--
Q 046850 532 GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITD-----------DALAVLA-LLLGCREGLEE-- 597 (686)
Q Consensus 532 ~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~-----------~al~~L~-nLa~~~~~~~~-- 597 (686)
.-+++++.+++++..|+...+..-+-.-...+|.|+..+..-.+.+.. +|+..+. +.+.+..--+.
T Consensus 1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~ 1222 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETIN 1222 (1702)
T ss_pred chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHH
Confidence 457999999999999998765422222234566666665543333221 1222111 11211111111
Q ss_pred -HHh---CC---CChHHHHHHHhcC-ChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHH
Q 046850 598 -IRK---CR---VLVPLLIDLLRFG-SAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADA 669 (686)
Q Consensus 598 -i~~---~~---~~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~ 669 (686)
+++ .. .++|.+.++++++ .-..|-.|+.++..|...-+.+....-. ..+..++..+++-++.+++.-+.
T Consensus 1223 ~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg---Kll~al~~g~~dRNesv~kafAs 1299 (1702)
T KOG0915|consen 1223 KCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG---KLLRALFPGAKDRNESVRKAFAS 1299 (1702)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh---HHHHHHhhccccccHHHHHHHHH
Confidence 111 11 1378888888763 3345556666666665443222222111 13555555556666666655433
No 284
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.14 E-value=0.81 Score=46.59 Aligned_cols=48 Identities=23% Similarity=0.583 Sum_probs=38.8
Q ss_pred CCCCCcccccCcccCc---CceEccCcccccHHhHHHHHhhC--CCCCCCCCc
Q 046850 279 NIPDEFRCPISLDLMR---DPVIVASGHTYDRNSIAQWINSG--HHTCPKSGQ 326 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~---dPv~~~cght~cr~ci~~w~~~~--~~~CP~c~~ 326 (686)
....-|.||+..+.-. .||.+.|||..-...+.+.-++| .+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4566799999988764 48899999999999988877776 367999943
No 285
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.12 E-value=4.2 Score=38.28 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=84.1
Q ss_pred HHHHHhhc--CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHH
Q 046850 398 FLVGKLAM--GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIM 474 (686)
Q Consensus 398 ~Lv~~L~s--~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~ 474 (686)
.++..|.. .+.+++..++-++..+. +..+..+.+ -+-..+-.++...+.+....++.++..|-..... ...+.
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44444442 45566777766666553 222332221 1223344445444444566677777666544433 44444
Q ss_pred -hcCcHHHHHHHHc--CCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC-ChH-HHHHHHHHHHHh
Q 046850 475 -AAGAIDSIIEVLQ--SGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG-TTA-GKKDAATALFNL 547 (686)
Q Consensus 475 -~~g~l~~Lv~lL~--~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~-~~~~Al~aL~nL 547 (686)
..|.++.++.+.. .. +......++.+|..=|.....|..|. ..+++.|-++++.+ +.. ++..|+..|..|
T Consensus 83 ~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~--~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFIS--KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCH--HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHH--HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 6799999999998 44 66666666666555555555555554 46899999999644 455 788888877653
No 286
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.00 E-value=3.4 Score=41.24 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHcCc-------HHHHHHHhc-CCCchhHHHHHHHHHHHhCChhc-HHHHHhCCCCh
Q 046850 535 AGKKDAATALFNLAVYNANKASVVVAGA-------VPLLIELLM-DDKAGITDDALAVLALLLGCREG-LEEIRKCRVLV 605 (686)
Q Consensus 535 ~~~~~Al~aL~nLs~~~~~~~~iv~~G~-------v~~Ll~lL~-~~~~~v~~~al~~L~nLa~~~~~-~~~i~~~~~~i 605 (686)
..+..|+.+|+.|+..+.|...++..|- +..|+++|. .+++-.+|.|+.+|.+||..++. ...+.....+|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 5688999999999999999988887764 445555554 35788899999999999985554 33444444449
Q ss_pred HHHHHHHhc
Q 046850 606 PLLIDLLRF 614 (686)
Q Consensus 606 ~~Lv~lL~~ 614 (686)
..|+.+++.
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999975
No 287
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.89 E-value=10 Score=38.92 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=107.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcC--cHHHHHHHHcCC---CCHHHHHHHHHHHHHhccCchhhh
Q 046850 439 PFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAG--AIDSIIEVLQSG---KTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 439 ~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g--~l~~Lv~lL~~~---~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
..+..++.+-..+-+--++.++.-+..+...-..+...+ ....+..++..+ .....+..+++++.|+......+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 344444544444444556666666655555444443332 244555555443 267888999999999999988888
Q ss_pred HhhcCCC-cHHHHHHhcccC----ChHHHHHHHHHHHHhcCCCC-cH-HHHHHcCcHHHHHHHhc-C-CCchhHHHHHHH
Q 046850 514 MIGGRPR-AIPALVGLLREG----TTAGKKDAATALFNLAVYNA-NK-ASVVVAGAVPLLIELLM-D-DKAGITDDALAV 584 (686)
Q Consensus 514 ~i~~~~g-~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~-~~-~~iv~~G~v~~Ll~lL~-~-~~~~v~~~al~~ 584 (686)
.+....+ .+-..+..+... +..++..++..++|++..-- ++ ..-.....+..+.+.+. . .+.+..-.++.+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 7766344 344444444443 56888889999999985321 11 11111123455555332 2 588999999999
Q ss_pred HHHHhCChhcHHHHHhCCCChHHHHHHHh--cCChHHHHHHH
Q 046850 585 LALLLGCREGLEEIRKCRVLVPLLIDLLR--FGSAKGKENSI 624 (686)
Q Consensus 585 L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~--~~s~~~ke~A~ 624 (686)
|++|...+.........-+ +...+.-.. ...+++++-+.
T Consensus 226 lGtL~~~~~~~~~~~~~l~-~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLD-VKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCT-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcC-hHHHHHHHHhcccchHHHHHhc
Confidence 9999976666666555433 344433222 24555665543
No 288
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.50 E-value=64 Score=37.76 Aligned_cols=199 Identities=12% Similarity=0.109 Sum_probs=129.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCC
Q 046850 440 FLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRP 519 (686)
Q Consensus 440 ~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~ 519 (686)
-|..+|.+........|+.-+.++-....+ -...++.+|+-.-+. +.|++...--.|..-+..+.+-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCCceee----
Confidence 477888887777777777665555433333 224678888888888 8899887665555444433222211
Q ss_pred CcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHH
Q 046850 520 RAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEI 598 (686)
Q Consensus 520 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i 598 (686)
-|..+-.-|+++++-++..|+.+|..+=.. ++.-=++-++-++..+..+.++..|+-++-.|-. .++.+.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 366777788999999998888888665221 1111112223333467788899888888888754 45544442
Q ss_pred HhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHH
Q 046850 599 RKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKAD 668 (686)
Q Consensus 599 ~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~ 668 (686)
+..+-.+|...++.+-..|+.+.-.+|-+ ..+.+. +-...|+.++.+-++..|--+-
T Consensus 182 ------~e~I~~LLaD~splVvgsAv~AF~evCPe----rldLIH---knyrklC~ll~dvdeWgQvvlI 238 (968)
T KOG1060|consen 182 ------EEVIKKLLADRSPLVVGSAVMAFEEVCPE----RLDLIH---KNYRKLCRLLPDVDEWGQVVLI 238 (968)
T ss_pred ------HHHHHHHhcCCCCcchhHHHHHHHHhchh----HHHHhh---HHHHHHHhhccchhhhhHHHHH
Confidence 34445577778899999999998888844 344443 3488999999888888775543
No 289
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=0.35 Score=48.70 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=32.8
Q ss_pred CCcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCccc
Q 046850 282 DEFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
.+..|.||++.-+|-|.+.|||. -|-.|=. ....||+||+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHH
Confidence 37899999999999999999995 3555511 234799998765
No 290
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=82.11 E-value=9.1 Score=39.33 Aligned_cols=162 Identities=20% Similarity=0.156 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhC--CHHHHHHhhcC----CCHHHHHHHHHHhhcccccccc
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAG--AIPFLVTLLSS----HDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g--~i~~Lv~lL~s----~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
...+...+.+=+.+.+.-++..+|.++. ++..-..+...+ ....+..++.. ..+..+.-+++++.|+-.+..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 3444555554455667788889988887 444444454432 24445554433 4677888899999999999888
Q ss_pred HHHHHhc-C-cHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCchhhhH--hhcCCCcHHHHHHhccc--CChHHHHHH
Q 046850 470 KILIMAA-G-AIDSIIEVLQSGK---TMEARENAAATIFSLSMIDDCKVM--IGGRPRAIPALVGLLRE--GTTAGKKDA 540 (686)
Q Consensus 470 k~~i~~~-g-~l~~Lv~lL~~~~---~~e~~~~aa~~L~~Ls~~~~~~~~--i~~~~g~i~~Lv~lL~~--~~~~~~~~A 540 (686)
+..+... + .+-..+..+.... +..++..++..++|++..-..... -.. ...+..+++.+.. .+++....+
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCCHHHHHHH
Confidence 8888865 3 3333333333332 567899999999999875422221 011 1245666664432 578999999
Q ss_pred HHHHHHhcCCCCcHHHHHH
Q 046850 541 ATALFNLAVYNANKASVVV 559 (686)
Q Consensus 541 l~aL~nLs~~~~~~~~iv~ 559 (686)
+.||++|...++.......
T Consensus 223 LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHHHHCCSHHHHHHCC
T ss_pred HHHHHHHhccChhHHHHHH
Confidence 9999999977766655555
No 291
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.10 E-value=93 Score=36.31 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh-cCCCHHHHHHHHHHhh
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL-SSHDPRIQENAVTALL 461 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~ 461 (686)
.+..+|.+...|.+....+++.|.-++-.+-+... .+. .++-..+-.+| ...|+....+|.-.|.
T Consensus 132 lepl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 132 LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPELIESFLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34677788888888899999998888777665211 111 12222223344 3456666666665443
No 292
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.08 E-value=66 Score=37.37 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=78.4
Q ss_pred CCcHHHHHHh-cccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhCChhcHH
Q 046850 519 PRAIPALVGL-LREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLGCREGLE 596 (686)
Q Consensus 519 ~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~~~~~~~ 596 (686)
.++|..|++. .++.+.++++.|..+|.-++..++. .++..+.+|.+ .++.++--++.+|+--|.....+.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4567777777 4566789999999999877765532 34556777754 578888888888888877555444
Q ss_pred HHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHH
Q 046850 597 EIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRK 666 (686)
Q Consensus 597 ~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~ 666 (686)
+ +..|-.+......=+|+.|+-.+..+...-.+.....+ .|+.+.+.+++.+..+.+-.+
T Consensus 625 A-------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv---~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 625 A-------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV---NGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred H-------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH---HHHHHHHHHHhhhhhhHHHHH
Confidence 4 23333334333334666666655554332222222221 345667777777665554433
No 293
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.03 E-value=20 Score=42.83 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=62.3
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHh---cCChHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLR---FGSAKGKENSITLLL 628 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~---~~s~~~ke~A~~~L~ 628 (686)
.++++..+|++..+++.+-...+.++-+-+..|..+++ ++.+....-..| |+..|.+++. +|+...-.++..++.
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~g-cvellleIiypflsgsspfLshalkIve 978 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAG-CVELLLEIIYPFLSGSSPFLSHALKIVE 978 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhccc-HHHHHHHHhhhhhcCCchHhhccHHHHH
Confidence 46788889999999999888888999999999999998 455555544445 4888888664 367777778888888
Q ss_pred HhhccC
Q 046850 629 GLCKDG 634 (686)
Q Consensus 629 ~L~~~~ 634 (686)
.||...
T Consensus 979 mLgayr 984 (2799)
T KOG1788|consen 979 MLGAYR 984 (2799)
T ss_pred HHhhcc
Confidence 887643
No 294
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.60 E-value=1.2e+02 Score=35.71 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=50.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
..+.+-.+|++...-+.-.|+.++.+|..- +-..+.- ++..+--+++++ ..-.|-.|..+|..++.......
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp-~~~lRfaAvRtLnkvAm~~P~~v 317 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSP-KVALRFAAVRTLNKVAMKHPQAV 317 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhCCccc
Confidence 345566677888888999999999888532 2111111 566666677777 88899999999999887654333
No 295
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=81.19 E-value=33 Score=38.45 Aligned_cols=241 Identities=15% Similarity=0.121 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHH
Q 046850 406 GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIE 484 (686)
Q Consensus 406 ~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~ 484 (686)
.+.+.|..++..|..+.+.+... ..... ..+...+. ...++.-..-+.+|..|+.+..+- ...+.+..+.|..
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~~~-~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~ 114 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQDSS-SGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLS 114 (464)
T ss_pred CCHHHHHHHHHHHHHHHHccccc-cHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHH
Confidence 36678888888888888755431 11111 11222222 233333344555666666543332 3356778888887
Q ss_pred HHcCCC--CHHHHHHHHHHHHHhccCchh-hhHhhcCCC----cHHHHHHhcccC----ChHHHHHHHHHHHHhcCCCCc
Q 046850 485 VLQSGK--TMEARENAAATIFSLSMIDDC-KVMIGGRPR----AIPALVGLLREG----TTAGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 485 lL~~~~--~~e~~~~aa~~L~~Ls~~~~~-~~~i~~~~g----~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~~~~~ 553 (686)
.|..-. ....|..+-.. +..+.. ........+ .+..++++++-. +.......+..++.+|....+
T Consensus 115 wl~~~~~~~~~~r~~~~~~----~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~ 190 (464)
T PF11864_consen 115 WLEPSYQAARSARRKAKKS----SSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS 190 (464)
T ss_pred HHHHHHHHHHHHHHHhhcc----ccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence 775431 00011111000 111100 000000122 334444444332 234444444545555443322
Q ss_pred H----------HHHHHcCcH-----HHHHHHhcC--CCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc--
Q 046850 554 K----------ASVVVAGAV-----PLLIELLMD--DKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-- 614 (686)
Q Consensus 554 ~----------~~iv~~G~v-----~~Ll~lL~~--~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-- 614 (686)
. ..++..|.+ +.++..|.+ ........+-.++.||+++.-|... +..|..+|.+
T Consensus 191 ~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~-------i~~L~~iL~~~~ 263 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA-------IRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH-------HHHHHHHHcccC
Confidence 1 233445543 456666633 2336677788899999987766554 6777777733
Q ss_pred ----CChHHHHHHHHHHHHhhccChHHHHHHHHcCCC--ChHHHHHHHhcCCHHHH
Q 046850 615 ----GSAKGKENSITLLLGLCKDGGEEVARRLLINPR--SIPSLQSLTTDGSLKAR 664 (686)
Q Consensus 615 ----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~~~~~~~k 664 (686)
.+...-.-|+.+|..+....++.....+-- .- +++.|...++.+++++-
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~-~~~~vl~sl~~al~~~~~~v~ 318 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF-SPSSVLPSLLNALKSNSPRVD 318 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecc-cHHHHHHHHHHHHhCCCCeeh
Confidence 233445578888877776653333333222 22 67788888877766543
No 296
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.89 E-value=38 Score=39.03 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=84.0
Q ss_pred HhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccH
Q 046850 391 AVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK 470 (686)
Q Consensus 391 ~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k 470 (686)
.+.+++..+++...+.+-.++.+.+..|+.+...+. .+.--+-.+....+..-|....+.++..|+.+|..+-.++.+-
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 445778888888889999999999999999987333 3333334566777777777888999999999999997544331
Q ss_pred HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh
Q 046850 471 ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
+..+...+..+++..++.|+|..| |.|++.......
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp 196 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLP 196 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccch
Confidence 124567788888887799999864 566666554333
No 297
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.67 E-value=31 Score=41.18 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhc-ccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHH
Q 046850 491 TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLL-REGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIEL 569 (686)
Q Consensus 491 ~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~l 569 (686)
+...|..|+..+............... .|.+-.++... .+.+..+...|+..|..|+..-..-..=...++.+.++..
T Consensus 266 ~WK~R~Eale~l~~~l~e~~~~~~~~~-~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~ 344 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAKKEIVKGY-TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDR 344 (815)
T ss_pred chHHHHHHHHHHHHHHhccccccccCc-chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHH
Confidence 455555555555544433321111112 34444444443 4456688888888888888765544444556788999999
Q ss_pred hcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHH--HHHHHHcCCC
Q 046850 570 LMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEE--VARRLLINPR 647 (686)
Q Consensus 570 L~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~--~~~~l~~~~g 647 (686)
+.+....+++.++.++-.++.... -... .+.+...+.+++|..+..+...+.......++. ....+ .+
T Consensus 345 lkekk~~l~d~l~~~~d~~~ns~~------l~~~-~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~---~~ 414 (815)
T KOG1820|consen 345 LKEKKSELRDALLKALDAILNSTP------LSKM-SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV---KT 414 (815)
T ss_pred hhhccHHHHHHHHHHHHHHHhccc------HHHH-HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH---HH
Confidence 999888999998888887776111 1112 677788889899999999888876665544321 11121 34
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 648 SIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 648 ~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
++|.++....+.+..+|..|...+-.+
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 688888888888888888876654433
No 298
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=79.71 E-value=0.7 Score=52.67 Aligned_cols=65 Identities=17% Similarity=0.393 Sum_probs=47.9
Q ss_pred CCcccccCcccCcCceEccCcccccHHhHHHHHhh--CCCCCCCCCccccCCCCCCcHHHHHHHHHH
Q 046850 282 DEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS--GHHTCPKSGQRLIHMALIPNYTLKSLLHQW 346 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~--~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 346 (686)
....||||....++|+.+.|-|.||+.|+-.-|.. +...||.|..........--..-..++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 35689999999999999999999999998776654 356899998766554444333344445443
No 299
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.30 E-value=0.59 Score=56.27 Aligned_cols=47 Identities=28% Similarity=0.558 Sum_probs=40.4
Q ss_pred CCCCCcccccCcccCc-CceEccCcccccHHhHHHHHhhCCCCCCCCCc
Q 046850 279 NIPDEFRCPISLDLMR-DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQ 326 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~-dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~ 326 (686)
.+...+.|+||++.++ .-.+..|||-||-.|+..|... +..||.|..
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 3456679999999998 5667799999999999999997 888999963
No 300
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.03 E-value=5.7 Score=35.58 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=56.6
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHh-----cC---CHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTT-----DG---SLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-----~~---~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+=|...++.+|-.|+.+|..+|..+++..+..+.....+|..+...-. .| ...+|..|..++.++-.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 45666666678899999999999999999988888888875556777666665 22 23589999999998854
Q ss_pred c
Q 046850 677 C 677 (686)
Q Consensus 677 ~ 677 (686)
.
T Consensus 120 ~ 120 (122)
T cd03572 120 Y 120 (122)
T ss_pred c
Confidence 3
No 301
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.33 E-value=11 Score=45.59 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=106.6
Q ss_pred CHHHHHHhhcC----CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhh
Q 046850 437 AIPFLVTLLSS----HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCK 512 (686)
Q Consensus 437 ~i~~Lv~lL~s----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~ 512 (686)
+.|.+++..+. .||++|..|.-+|+.+-.-+.. +.+ -.++.|+.++...+++-+|.+++.+++.|+..-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpn- 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN- 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HHH-HHHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence 46667777743 5899999999999887542221 222 36889999998555899999999999998764322
Q ss_pred hHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 513 VMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 513 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
+. ...-+.|...|.+.++.+++.|+..|.+|..++ .+--.|.++-+..+|.+++..+.+-|=.....|+.
T Consensus 995 --li--e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 --LI--EPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred --cc--chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 11 234567888899999999999999999998765 23335889999999999999999888867776664
No 302
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=78.13 E-value=93 Score=32.54 Aligned_cols=218 Identities=17% Similarity=0.150 Sum_probs=150.3
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHh-CC-HHHHHHhhcC-C-CHHHHHHHHHHhhcccccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEA-GA-IPFLVTLLSS-H-DPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~-g~-i~~Lv~lL~s-~-~~~~~~~A~~aL~nLs~~~~~ 469 (686)
+....|+..|...+.+.+..++....++-..+...|...++. .. ...+-.++.. . .+++..++-..|.....++.-
T Consensus 79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~L 158 (342)
T KOG1566|consen 79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFL 158 (342)
T ss_pred CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 567888899998999999999999988888777777665553 22 2222333333 2 255555555556555555555
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--hhhHhhcCCC-c-HHHHHHhcccCChHHHHHHHHHHH
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD--CKVMIGGRPR-A-IPALVGLLREGTTAGKKDAATALF 545 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~--~~~~i~~~~g-~-i~~Lv~lL~~~~~~~~~~Al~aL~ 545 (686)
...|.+...+...-.....+ .-++-..|.++...+...+. ..+.+..... . .+.--.++.+++--.+..++.+|+
T Consensus 159 akiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 159 AKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 66677777788888888877 66777778888877765542 2222222121 1 233556778888889999999999
Q ss_pred HhcCCCCcHHHHHH----cCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChh---cHHHHHhCCCChHHHHHHHhc
Q 046850 546 NLAVYNANKASVVV----AGAVPLLIELLMDDKAGITDDALAVLALLLGCRE---GLEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 546 nLs~~~~~~~~iv~----~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~---~~~~i~~~~~~i~~Lv~lL~~ 614 (686)
.+-.+.+|...|.. -..+..++.+|.+++..++-+|-.+.+....++. ....|+-.+- +.|++++..
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr--~KLl~~l~~ 311 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNR--PKLLELLHD 311 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCc--HHHHHHHHH
Confidence 99999888776654 2568889999999999999999999998876443 3344455454 677777654
No 303
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=77.94 E-value=10 Score=35.02 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=59.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs 464 (686)
..++.|.+.|+++++.+|..|+..|..+.+.. ......+...+++..|+.++. ..++.++..++..+.+-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999853 445667778889999999887 467889999988887765
No 304
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.82 E-value=16 Score=44.32 Aligned_cols=140 Identities=21% Similarity=0.235 Sum_probs=104.1
Q ss_pred hHHHHHHHhh----cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhcccccccc
Q 046850 395 TAEFLVGKLA----MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 395 ~i~~Lv~~L~----s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
..|++++..+ .++++.|..|.-+|..+.--+.+... ...|.|+..+. ++++.++.+++-+++-|+.--+|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4566777664 45899999999999887754433222 25789999887 78999999999999999865444
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
+++ -.-+.+-..|.+. +..+|+.|.-+|.+|-.++ +..+.|.++-+..+|.+++.+++..|=....-|+.
T Consensus 995 ---lie-~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 ---LIE-PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ---ccc-hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 111 1345567778888 9999999999999997764 23348999999999999998888877755555554
No 305
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.43 E-value=19 Score=40.39 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=80.7
Q ss_pred HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc
Q 046850 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 390 ~~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
+.+.+.+.-+++.+.+.+-.++...+..|+.+.. ...--....-+|.+..|.+-+-...+.++..|+.+|..+-....|
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 3445677888888889999999999999998876 333223444567777887777778889999999999887655544
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD 510 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~ 510 (686)
-+- .....++.+++..++.|+|..| |.|++....
T Consensus 166 een----~~~n~l~~~vqnDPS~EVRr~a---llni~vdns 199 (885)
T COG5218 166 EEN----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDNS 199 (885)
T ss_pred hHH----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCCC
Confidence 211 1234677777777688998864 667766553
No 306
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=77.17 E-value=1.1e+02 Score=33.90 Aligned_cols=143 Identities=17% Similarity=0.075 Sum_probs=85.9
Q ss_pred cHHHHHHhccc-CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHH-HHHHHhCChhcHHHH
Q 046850 521 AIPALVGLLRE-GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALA-VLALLLGCREGLEEI 598 (686)
Q Consensus 521 ~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~-~L~nLa~~~~~~~~i 598 (686)
.+-.+++.|.+ .+...++.|+..|.-++.+.+.+-.=-..=++..+++.=.+....+...|.. ++..++.+..-+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 45667778877 6678899999999999988764433222234444555445554444444433 344444422211
Q ss_pred HhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 046850 599 RKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRL 673 (686)
Q Consensus 599 ~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~ 673 (686)
+|..+..++.+.+...--.++..+..++..-..+-...++ ..+.|.+++-..+....+|+.|...|=.
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 2455555555445555556666777777665444333333 3468888888888888888887765433
No 307
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=76.79 E-value=5.8 Score=46.57 Aligned_cols=149 Identities=17% Similarity=0.143 Sum_probs=104.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHh--cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMA--AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
..+|.|+....+.+...+.+=+.+|.+.-.+-+ +..+.. ...+|.|++.|+=+ +..+|..+..++.-+....+.-.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccccc
Confidence 578888887776565566666666666554222 344443 36788899999888 88888888888877765543222
Q ss_pred HhhcCCCcHHHHHHhcccCC---hHHHHHHHHHHHHhcC-CCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHH
Q 046850 514 MIGGRPRAIPALVGLLREGT---TAGKKDAATALFNLAV-YNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLAL 587 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~---~~~~~~Al~aL~nLs~-~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~n 587 (686)
.--- .-.+|.+..+=++.+ ..++..|+.+|..|.. .+.+.-.-.+-.++.+|.+.|.++..-++++|..+=.+
T Consensus 945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 2212 447888887766555 5789999999999998 44455555556678889999988877888888776444
No 308
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.36 E-value=1e+02 Score=34.00 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=92.3
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHH-HHHhcCCCCcHHH
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATA-LFNLAVYNANKAS 556 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~a-L~nLs~~~~~~~~ 556 (686)
.+..++++|++..+.-.+..|..+|..++.....+-.=.. .-+|..+++.-++..+.+...|... +.-++++.+....
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst-E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I 408 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST-EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI 408 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH
Confidence 5677888998854777899999999999887644332222 3467777777666666555555443 4455666653332
Q ss_pred HHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC--hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 046850 557 VVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC--REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 557 iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~--~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 634 (686)
. .+..++...+......++..+..++.. .+--..++. +. .|.+++-.++.+..+|..|+.+|..+...-
T Consensus 409 ~-------~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di-aP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 409 V-------NISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLP-DI-APCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred H-------HHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh-hhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 2 223333333444444555566666652 111122222 33 788888888889999999999998887654
Q ss_pred h
Q 046850 635 G 635 (686)
Q Consensus 635 ~ 635 (686)
+
T Consensus 480 G 480 (516)
T KOG2956|consen 480 G 480 (516)
T ss_pred h
Confidence 3
No 309
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.33 E-value=56 Score=33.57 Aligned_cols=177 Identities=16% Similarity=0.126 Sum_probs=104.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhh-------CchhHHHHHHhCCHHHHHHhhcCCC----HHHHHHHHHHhhc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKT-------GMDNRRIIAEAGAIPFLVTLLSSHD----PRIQENAVTALLN 462 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~-------~~~~r~~i~~~g~i~~Lv~lL~s~~----~~~~~~A~~aL~n 462 (686)
|.-+-+++.|.|.... ..++..|..++.. +.++|-.+.--+.+|.++.-+.+++ ......++..|..
T Consensus 64 Glq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSSSTY--ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCCCcH--HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 4555666777655432 2345555555532 2234554544556777777666655 1334455566766
Q ss_pred cccccccHHHHHhcCcHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHH
Q 046850 463 LSIFDNNKILIMAAGAIDSIIEVLQSGK---TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKD 539 (686)
Q Consensus 463 Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~---~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 539 (686)
++.... .+.+..++.....+. ..+....++..|.+-... +. . ...+-.|+.+|.++.+..+..
T Consensus 142 ~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P-~~-----~-~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 142 VAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP-DH-----E-FQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc-hh-----H-HHHHHHHHHHHhCCcHHHHHH
Confidence 663211 123444444444331 233444444444332111 00 1 345777899999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 540 AATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 540 Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
.+..|..|-.+-+.+.. .....+.+|+++|.. ....+|+.+|.++..
T Consensus 208 ~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t---~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP-HGADLISPLLRLLQT---DLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHhccccCCCC-cchHHHHHHHHHhCC---ccHHHHHHHHHHHHh
Confidence 99999999887764433 556689999999965 456778888877643
No 310
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.24 E-value=14 Score=33.64 Aligned_cols=72 Identities=26% Similarity=0.299 Sum_probs=58.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCch-hHHHHHHhCCHHHHHHhhcC---CCHHHHHHHHHHhhcccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMD-NRRIIAEAGAIPFLVTLLSS---HDPRIQENAVTALLNLSI 465 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLs~ 465 (686)
..++.|.+.|+++++.+|..|+..|..+.+.... ....+....++..|+.++.. .++.++..++..+.+.+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999986544 55666666777788998875 478899999988877754
No 311
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.69 E-value=1.9 Score=45.93 Aligned_cols=30 Identities=23% Similarity=0.664 Sum_probs=23.3
Q ss_pred cCcccccH-----HhHHHHHhh------------CCCCCCCCCcccc
Q 046850 300 ASGHTYDR-----NSIAQWINS------------GHHTCPKSGQRLI 329 (686)
Q Consensus 300 ~cght~cr-----~ci~~w~~~------------~~~~CP~c~~~l~ 329 (686)
.|++.||| .|+-+||.. |...||.||..+-
T Consensus 305 ~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 305 PCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred CCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 56666654 899999985 5668999998764
No 312
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=75.26 E-value=53 Score=35.72 Aligned_cols=121 Identities=11% Similarity=0.187 Sum_probs=90.2
Q ss_pred CHHHHHHhhcCC---CHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHHHHHHc-CC--CCHHHHHHHHHHHHHhccCc
Q 046850 437 AIPFLVTLLSSH---DPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSIIEVLQ-SG--KTMEARENAAATIFSLSMID 509 (686)
Q Consensus 437 ~i~~Lv~lL~s~---~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~-~~--~~~e~~~~aa~~L~~Ls~~~ 509 (686)
....|..++.+. .+.+--.|+.++..+-.+++. -..+.++|.++.+++.+. .+ .+.++....-.+|..||.+.
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~ 186 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN 186 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence 344555566653 467888999999999888877 667778999999999998 44 37889999999999999999
Q ss_pred hhhhHhhcCCCcHHHHHHhcccCCh-------HHHHHHHHHHHHhcCCCC-cHHHHH
Q 046850 510 DCKVMIGGRPRAIPALVGLLREGTT-------AGKKDAATALFNLAVYNA-NKASVV 558 (686)
Q Consensus 510 ~~~~~i~~~~g~i~~Lv~lL~~~~~-------~~~~~Al~aL~nLs~~~~-~~~~iv 558 (686)
...+.+.. .+.++.+++++.+.+- +.....-.++-.|.++.+ -|..++
T Consensus 187 ~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 187 RGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred HHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999998 8999999999876432 222333344555667665 344433
No 313
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.04 E-value=1.5e+02 Score=35.67 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=80.7
Q ss_pred hCCHHHHHHhhcC--------CCHHHHHHHHHHhhccccc---cccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHH
Q 046850 435 AGAIPFLVTLLSS--------HDPRIQENAVTALLNLSIF---DNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIF 503 (686)
Q Consensus 435 ~g~i~~Lv~lL~s--------~~~~~~~~A~~aL~nLs~~---~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~ 503 (686)
.|.++.++..|.+ .++.-.+-|+.++++|+.- ...-.-.++.=.++.+...++++ ..-.|..|++++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~-~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP-YGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc-hhHHHHHHHHHHH
Confidence 4667788887762 3556667788888887621 11122233444556666677777 7789999999999
Q ss_pred HhccCc-hhhhHhhcCCCcHHHHHHhcc-cCChHHHHHHHHHHHHhcCCCCcHHHHHHc
Q 046850 504 SLSMID-DCKVMIGGRPRAIPALVGLLR-EGTTAGKKDAATALFNLAVYNANKASVVVA 560 (686)
Q Consensus 504 ~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~ 560 (686)
.++..+ .....+ ..++....+.|. +....++..|+-||..+.++.+....-++.
T Consensus 488 ~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 999655 333333 235666677776 555689999999999999887744333343
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.92 E-value=1.6 Score=50.47 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=36.6
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCc
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQ 326 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~ 326 (686)
.+-+.-.|..|.-.+.-|++- -|||.|-++|++ .+...||.|.-
T Consensus 836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred ceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 344456999999999999864 999999999988 45789999965
No 315
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=74.87 E-value=31 Score=40.69 Aligned_cols=194 Identities=12% Similarity=0.099 Sum_probs=121.4
Q ss_pred Hhhcccccc-ccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHH--HHHHhcccCCh-
Q 046850 459 ALLNLSIFD-NNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIP--ALVGLLREGTT- 534 (686)
Q Consensus 459 aL~nLs~~~-~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~- 534 (686)
+|+++..+. +++..+.+.|++..+..+++.-...+....+.+.+.+++...+++..... ...+. .+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhcchh
Confidence 777887765 44999999999999999999766788999999999999988766555443 22233 33335555444
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHH-HHhCChhcHHHHHhCCCChHHHHHHHh
Q 046850 535 AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLA-LLLGCREGLEEIRKCRVLVPLLIDLLR 613 (686)
Q Consensus 535 ~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~-nLa~~~~~~~~i~~~~~~i~~Lv~lL~ 613 (686)
+.-..|++.|..+..+.+. .... .-++.+...+. .+...+.............|.+..++.
T Consensus 573 ersY~~~siLa~ll~~~~~---~~~~---------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK---TTEC---------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc---Cccc---------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence 7788888888888776543 1111 11122222222 222222222222222221333555555
Q ss_pred c-CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHH
Q 046850 614 F-GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRL 673 (686)
Q Consensus 614 ~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~ 673 (686)
. ..+..+-.|+.++.+++...+. ....+.+ .|.++.+..+-... ....+..+..++..
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKE-YCKLVRE-SNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChh-hhhhhHh-ccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 4 5777889999999999988744 5555555 77788887765443 44455555555443
No 316
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.92 E-value=4.4 Score=32.68 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=23.2
Q ss_pred CcccccCcccC-----cCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLM-----RDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m-----~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.-.|.||++-. -+|.+. .|+--.||.|++--.+.|+..||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 34899998744 244443 688889999999888889999999986543
No 317
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=73.78 E-value=1.5 Score=46.11 Aligned_cols=45 Identities=13% Similarity=0.437 Sum_probs=35.9
Q ss_pred CCcccccCcccCc-Cce---EccCcccccHHhHHHHHhh-CCCCCCCCCc
Q 046850 282 DEFRCPISLDLMR-DPV---IVASGHTYDRNSIAQWINS-GHHTCPKSGQ 326 (686)
Q Consensus 282 ~~~~Cpic~~~m~-dPv---~~~cght~cr~ci~~w~~~-~~~~CP~c~~ 326 (686)
-++.|..|++.+- .|- .++|.|.|--.|+..++.. +..+||.|++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3679999998762 333 3599999999999999875 5689999983
No 318
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.54 E-value=4.3 Score=43.22 Aligned_cols=45 Identities=16% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCcccccCcccCc--Cce-EccCcccccHHhHHHHHhh----CC---CCCCCCCc
Q 046850 282 DEFRCPISLDLMR--DPV-IVASGHTYDRNSIAQWINS----GH---HTCPKSGQ 326 (686)
Q Consensus 282 ~~~~Cpic~~~m~--dPv-~~~cght~cr~ci~~w~~~----~~---~~CP~c~~ 326 (686)
.-|.|-||.+-.. +-+ .++|+|.||++|...++.. |. ..||.++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3579999997553 333 4599999999999999985 32 35776543
No 319
>PHA03096 p28-like protein; Provisional
Probab=73.28 E-value=2.1 Score=44.27 Aligned_cols=43 Identities=19% Similarity=0.424 Sum_probs=30.8
Q ss_pred cccccCcccCc-Cce-------EccCcccccHHhHHHHHhhC--CCCCCCCCc
Q 046850 284 FRCPISLDLMR-DPV-------IVASGHTYDRNSIAQWINSG--HHTCPKSGQ 326 (686)
Q Consensus 284 ~~Cpic~~~m~-dPv-------~~~cght~cr~ci~~w~~~~--~~~CP~c~~ 326 (686)
-.|.||++... .|+ .-.|.|.||..||..|..+. ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 47999997442 222 22899999999999999863 356776654
No 320
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=72.98 E-value=2.2 Score=41.75 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=40.5
Q ss_pred CcccccCcccCcCceEc-cCcccccHHhHHHHHhh-CCCCCCC--CCccccCCCCCCcH
Q 046850 283 EFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINS-GHHTCPK--SGQRLIHMALIPNY 337 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~-~~~~CP~--c~~~l~~~~l~~n~ 337 (686)
+.+|||+.....-|++- .|.|-|++.-|.+++.. -...||. |.+......+..++
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~ 247 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDH 247 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhH
Confidence 47999999998889854 89999999999998873 2456885 65555444444333
No 321
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=72.75 E-value=17 Score=33.70 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=60.4
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCch-hHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhcccc
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMD-NRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSI 465 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~ 465 (686)
+..+..|.+.|.+.++.+|..|+..|..+.+.... ....+...+++..|+.++.. .+..++..++..+...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999985543 45567778899999999987 788999999988877653
No 322
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.72 E-value=3.8 Score=32.30 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=30.3
Q ss_pred CceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcH
Q 046850 295 DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNY 337 (686)
Q Consensus 295 dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~ 337 (686)
|..+-.--+|||..|.+..+ +..||.|+-.+.....+|-.
T Consensus 21 dA~ICtfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa 60 (84)
T COG3813 21 DARICTFECTFCADCAENRL---HGLCPNCGGELVARPIRPAA 60 (84)
T ss_pred ceeEEEEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHH
Confidence 44444556799999998766 57899999988777777743
No 323
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.64 E-value=39 Score=39.05 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=96.6
Q ss_pred HHhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHh-hcCCCHHHHHHHHHHhhccccccc
Q 046850 390 DAVKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTL-LSSHDPRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 390 ~~~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLs~~~~ 468 (686)
+.....++.|...++..+..+|..++..+-..+..-+ ..++..-++|.|-.+ +.+.+..++.+++.++..+. +
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q 458 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---Q 458 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---H
Confidence 3344567888888999999999999999998887322 445556678888764 45678899999999999987 2
Q ss_pred cHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC
Q 046850 469 NKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT 533 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 533 (686)
..+...-...+.++.+..+.. +++.......+..++.....+...+.. ..++|.++.+...+.
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~-~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMA-ENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeeh-hhhhhhhhhhhhccc
Confidence 222222223366666666666 778888888888888777666433334 678999988877655
No 324
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.31 E-value=44 Score=37.54 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=79.2
Q ss_pred CCHHHHHHh-hcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH
Q 046850 436 GAIPFLVTL-LSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM 514 (686)
Q Consensus 436 g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~ 514 (686)
|+|..|+.. .+..|.+++..|+-+|+-.+.++.+ .+...+++|...++.-+|...+-+|.--|.+...+
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-- 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-- 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--
Confidence 566677765 5667889999999999888876543 56777888887778888888888887766654222
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDD 573 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~ 573 (686)
-++..|-.+..+.+.-++..|+-++.-+.......-.---.++...+.+++.+.
T Consensus 621 -----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 621 -----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred -----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 244555556666667778888888876654321100000123445566666443
No 325
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.27 E-value=64 Score=37.38 Aligned_cols=134 Identities=15% Similarity=0.127 Sum_probs=92.2
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH
Q 046850 435 AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM 514 (686)
Q Consensus 435 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~ 514 (686)
..++|.|..-+++.+..+|+.++..+..++..-+ ...+..-++|.|-.+.....+..++.+++.++..+. +..+.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~ 462 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDK 462 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHH
Confidence 3467777778888899999999999988875543 333444456666555333337888999999998888 22222
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCC
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDK 574 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~ 574 (686)
..- ..-+.++..-.+..++.++...+.+..++.....+...+..+.++|.++.+...+.
T Consensus 463 ~~v-~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 463 AAV-LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 211 22455556666677888888888888888876665555666778888887775543
No 326
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.18 E-value=1.4 Score=43.66 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=32.7
Q ss_pred ccccCcccC-cCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 285 RCPISLDLM-RDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 285 ~Cpic~~~m-~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
.|--|..-- .+|..+ +|+|.||..|...-. ...||.|++++....+.+|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 455554322 677754 999999999965422 2389999998765555444
No 327
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.01 E-value=1.3e+02 Score=34.18 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=73.1
Q ss_pred CCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC---ChhcH
Q 046850 519 PRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG---CREGL 595 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~---~~~~~ 595 (686)
.|.+..++.-+.+.+..++..++..|.-++..-.-....+..|.+..|...+.+..+.++.+|+.+|..+-. +++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 456777777777788899999999999998877777788888999999999988888999999999988853 33322
Q ss_pred HHHHhCCCChHHHHHHHhc-CChHHHHHH
Q 046850 596 EEIRKCRVLVPLLIDLLRF-GSAKGKENS 623 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A 623 (686)
. ...|+.+++. .|.+++..|
T Consensus 170 ~--------~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 170 I--------VNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred H--------HHHHHHHHhcCcHHHHHHHH
Confidence 2 3345556665 455666654
No 328
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=71.66 E-value=1.4 Score=38.31 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCCCCCCCcccccCcccCcCceEc--cCcccccHHhHH
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIV--ASGHTYDRNSIA 311 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~--~cght~cr~ci~ 311 (686)
....+.++-.|++|...+.++++. +|||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 344666777899999988766644 999999888864
No 329
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.59 E-value=18 Score=40.46 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=79.5
Q ss_pred CCcHHHHHHh-cccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhCChhcHH
Q 046850 519 PRAIPALVGL-LREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLGCREGLE 596 (686)
Q Consensus 519 ~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~~~~~~~ 596 (686)
.|++..|++. .++++.++++.|+-||.-.|..+. ..++..+++|.+ .+..++...+-+|+.-|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 5778888887 677788999999999998887653 345566777754 466666666666766665333222
Q ss_pred HHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHH
Q 046850 597 EIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKA 663 (686)
Q Consensus 597 ~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~ 663 (686)
+ +..|-.++.....-+|+.|+-++..+....+++....+ .++++.+.+++.+....+
T Consensus 622 a-------~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v---~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 622 A-------TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV---KRIIKKFNRVIVDKHESG 678 (926)
T ss_pred H-------HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH---HHHHHHHHHHHhhhhHhH
Confidence 2 44444455555566777777766665544334333332 335667777776665443
No 330
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=71.47 E-value=19 Score=40.89 Aligned_cols=96 Identities=23% Similarity=0.279 Sum_probs=56.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
.++..++.+....+..+|.+|++.|-.+++++++.-..++ ..|+.+|.++++.-...+-.+|..|-..+
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d------ 127 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQD------ 127 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcC------
Confidence 4677888888889999999999999999998777666654 57889999988766555555555553211
Q ss_pred HhcCcHHHHHHHHc---CCCCHHHHHHHHHHH
Q 046850 474 MAAGAIDSIIEVLQ---SGKTMEARENAAATI 502 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~---~~~~~e~~~~aa~~L 502 (686)
-.+.+..+..-+. .+ +..+|+.+...|
T Consensus 128 -~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl 157 (556)
T PF05918_consen 128 -PKGTLTGLFSQIESSKSG-DEQVRERALKFL 157 (556)
T ss_dssp -HHHHHHHHHHHHH---HS--HHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHhcccC-chHHHHHHHHHH
Confidence 1233444444443 34 555666666655
No 331
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.38 E-value=33 Score=39.54 Aligned_cols=126 Identities=20% Similarity=0.117 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC
Q 046850 493 EARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMD 572 (686)
Q Consensus 493 e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~ 572 (686)
.+...+++.+.+|-..+..-. ++ .|.+..++.-..+.+..++...+..|.-|......+..-+-.+....+...|.+
T Consensus 61 RIl~fla~fv~sl~q~d~e~D-lV--~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED-LV--AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh-HH--HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 344444445544443332222 21 456666666666777899999999999999877777777888888899999989
Q ss_pred CCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHH
Q 046850 573 DKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITL 626 (686)
Q Consensus 573 ~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~ 626 (686)
..+.++.+|+.+|..+=..+..- +..+ +..+..+++. .++++|..|+..
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~de----e~~v-~n~l~~liqnDpS~EVRRaaLsn 187 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDE----ECPV-VNLLKDLIQNDPSDEVRRAALSN 187 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCC----cccH-HHHHHHHHhcCCcHHHHHHHHHh
Confidence 89999999999999986432210 1122 4556666766 567777766544
No 332
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.31 E-value=19 Score=32.74 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhcCCC--HHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLSSHD--PRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~s~~--~~~~~~A~~aL~nLs 464 (686)
..++.|.+.|+++++.+|..|+..|-.+.+.. ......+...+++..|+.+++... +.++..++..+.+-+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999863 445667777889999999887642 338888887776654
No 333
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=70.98 E-value=21 Score=32.82 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=57.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLSS------HDPRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~nLs 464 (686)
..+..+.+.|+++++.+|..|+..|..+.+.. ......++..+++.-|+++++. .+..++..++..+..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999843 3456777778899899999853 46788888888776654
No 334
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.89 E-value=2.5e+02 Score=34.03 Aligned_cols=193 Identities=11% Similarity=0.131 Sum_probs=102.0
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhcccccccc-
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNN- 469 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~- 469 (686)
....+.-+...++++-...|.+|++.+..++.-+-.+...+. .++....+.|. +.+-.++..|+-||.-+-.+.+.
T Consensus 460 E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 460 EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 344555556667788888899999999999843333333322 34556666665 77788999999999888766544
Q ss_pred HHHHHhc--CcHHHHHHHHcCCCCHHHHHHHHHHH-HHhccC-chhhhHhhcCCCcHHHHHHhccc---C---ChHHHHH
Q 046850 470 KILIMAA--GAIDSIIEVLQSGKTMEARENAAATI-FSLSMI-DDCKVMIGGRPRAIPALVGLLRE---G---TTAGKKD 539 (686)
Q Consensus 470 k~~i~~~--g~l~~Lv~lL~~~~~~e~~~~aa~~L-~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~---~---~~~~~~~ 539 (686)
...+-.. +.+..|+++.+.- ..+...+.+..+ ...+.. ......+. ......+.+++.. . +.+-...
T Consensus 538 ~e~~~~hvp~~mq~lL~L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~--q~La~~F~k~l~~~~~~~~~~ddk~ia 614 (1010)
T KOG1991|consen 538 DEKVSAHVPPIMQELLKLSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELC--QNLAETFLKVLQTSEDEDESDDDKAIA 614 (1010)
T ss_pred hhhHhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHH--HHHHHHHHHHHhccCCCCccchHHHHH
Confidence 3444432 4566666666654 333333333222 111110 01111111 1233344444442 1 1233444
Q ss_pred HHHHHHHhcC---CCCcHHHHHH---cCcHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 046850 540 AATALFNLAV---YNANKASVVV---AGAVPLLIELLMDDKAGITDDALAVLALLL 589 (686)
Q Consensus 540 Al~aL~nLs~---~~~~~~~iv~---~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa 589 (686)
|.+.|..+++ .=++...+.. .-..+.+-.+|...-.+.-++++.++..+.
T Consensus 615 A~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 615 ASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 5555554432 2223333332 233445555556655667777777776664
No 335
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.88 E-value=76 Score=36.87 Aligned_cols=166 Identities=18% Similarity=0.147 Sum_probs=87.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC----CCHHHHHHHHHHhhcccccc--
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS----HDPRIQENAVTALLNLSIFD-- 467 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s----~~~~~~~~A~~aL~nLs~~~-- 467 (686)
..+..+.+.+.++.... ..|+..|..+.......-.. .+..+..++.+ .++.+...|+-++..|...-
T Consensus 395 ~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 45566666666543222 23445555554422121111 34455566654 45667777777776664321
Q ss_pred --------ccHHHHHhcCcHHHHHHHHc----CCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC---
Q 046850 468 --------NNKILIMAAGAIDSIIEVLQ----SGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG--- 532 (686)
Q Consensus 468 --------~~k~~i~~~g~l~~Lv~lL~----~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--- 532 (686)
..+.......+++.+...|. .+ +.+.+..++.+|+|+-. ...++.|...+...
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhcccc
Confidence 01122222345666666665 34 67888899999999843 34677888777665
Q ss_pred ChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC--CCchhHHHHHHH
Q 046850 533 TTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMD--DKAGITDDALAV 584 (686)
Q Consensus 533 ~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~--~~~~v~~~al~~ 584 (686)
+..++..|++||..+....+.. +.+.|++++.+ .+.+++..|..+
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLI 583 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHH
Confidence 4688899999999886554322 23456666644 345555555433
No 336
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=70.06 E-value=15 Score=34.00 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=62.5
Q ss_pred CCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhC
Q 046850 519 PRAIPALVGLLREGTTAGKKDAATALFNLAVYNA--NKASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLG 590 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~ 590 (686)
..++..|..-|.++++.+...|+..|-.+..+.+ ....+.+...+..|++++.. .+..++..++.++...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3477788888899999999999999999998877 56778888999999999977 688999999999998874
No 337
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=69.52 E-value=33 Score=35.65 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHH--HHHHcCcHHHHHH----Hhc--------CCCchhHHHHHHH
Q 046850 519 PRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKA--SVVVAGAVPLLIE----LLM--------DDKAGITDDALAV 584 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~--~iv~~G~v~~Ll~----lL~--------~~~~~v~~~al~~ 584 (686)
.-++|+++.++.+.++..|..++.+|..+...-+... .+.+.|..+.+-+ +|. +.+..+...+..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 3479999999999999999999999999987654332 4566776554444 333 3455677777778
Q ss_pred HHHHhC
Q 046850 585 LALLLG 590 (686)
Q Consensus 585 L~nLa~ 590 (686)
|..|+.
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 887754
No 338
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=69.05 E-value=1.6e+02 Score=31.24 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=112.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhcccc-cccc-HHHHHhc-C-cHHHHHHHHcCCC----C--------HHHHHHHHHH
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSI-FDNN-KILIMAA-G-AIDSIIEVLQSGK----T--------MEARENAAAT 501 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~-k~~i~~~-g-~l~~Lv~lL~~~~----~--------~e~~~~aa~~ 501 (686)
++.+...|++....+...++..|..+.. +... ...+... + -.+.+.+++.... . ..+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5677788888888888899999999987 4433 4445543 3 3455566653210 1 1778888888
Q ss_pred HHHhccCc--hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHH-hcCCCC----cHHHHHHcCcHHHHHHHhcCCC
Q 046850 502 IFSLSMID--DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFN-LAVYNA----NKASVVVAGAVPLLIELLMDDK 574 (686)
Q Consensus 502 L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n-Ls~~~~----~~~~iv~~G~v~~Ll~lL~~~~ 574 (686)
+..+.... ..+..+....+.+..+.+-|..+++++....+.+|.. +..++. .+..+....++..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 77775543 4566666557889999999999888999999999995 444432 4566677778888999776655
Q ss_pred c----hhHHHHHHHHHHHhCChh
Q 046850 575 A----GITDDALAVLALLLGCRE 593 (686)
Q Consensus 575 ~----~v~~~al~~L~nLa~~~~ 593 (686)
. .+.+.+-..|..+|.++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 5 889999999999997543
No 339
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.67 E-value=22 Score=33.70 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=68.0
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-hHHHHHHHHHHHHhcCCCCcHHH
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-TAGKKDAATALFNLAVYNANKAS 556 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~~~~~ 556 (686)
.+..+..+|++. +.+.|..++..+.-++...............+..|+.+|+..+ +.+++.|+.+|..|...-.....
T Consensus 26 l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 455677888887 7888888888888777765333322222346778888887765 46777888888877654433333
Q ss_pred HHHc-------CcHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 046850 557 VVVA-------GAVPLLIELLMDDKAGITDDALAVLALLL 589 (686)
Q Consensus 557 iv~~-------G~v~~Ll~lL~~~~~~v~~~al~~L~nLa 589 (686)
+.+. ++++.+++++.+ ....+.++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 3322 234445554443 455666777776664
No 340
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.58 E-value=33 Score=32.45 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=76.5
Q ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCC-CChHHHHHHHhc-CChHHHHHHHHHHHHhhccCh--HH
Q 046850 562 AVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCR-VLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGG--EE 637 (686)
Q Consensus 562 ~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~-~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~--~~ 637 (686)
.+..+..+|.+++..-+-.++..+..++.... ...+.+.+ ..+..|+.+|+. .++..++.|+.+|..|..... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45557777877777777777777777775321 33443433 237888888887 456688999999888875332 23
Q ss_pred HHHHHHc-C-CCChHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCCCCCC
Q 046850 638 VARRLLI-N-PRSIPSLQSLTTDGSLKARRKADALLRLLNRCCSQSHNPVG 686 (686)
Q Consensus 638 ~~~~l~~-~-~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 686 (686)
....+.. . .++++.++.++++ +.....+..+|..+-...+..-.||+
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~ 153 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFA 153 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchH
Confidence 2233222 0 1245555555554 56667777777777777777777763
No 341
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=67.46 E-value=56 Score=30.76 Aligned_cols=142 Identities=12% Similarity=0.151 Sum_probs=74.6
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHH
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASV 557 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~i 557 (686)
.++.|+.+|+++.+...|..++.+|+.|---|.++.+... . ..+.-. -...+....... +.+. .....-...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~-~-~~~~~~--~~~~~~~~~~~~---l~~~-~~~~~~ee~ 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ-K-SLDSKS--SENSNDESTDIS---LPMM-GISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc-c-cCCccc--cccccccchhhH---Hhhc-cCCCchHHH
Confidence 4677888999887899999999999999877766665322 1 111000 000011111111 1111 111133444
Q ss_pred HHcCcHHHHHHHhcCCCch-hHHHHHHHHHHHhCC--hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 558 VVAGAVPLLIELLMDDKAG-ITDDALAVLALLLGC--REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 558 v~~G~v~~Ll~lL~~~~~~-v~~~al~~L~nLa~~--~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
.-..++..|++.|.+++.. -...++.++.++..+ ...... +. .. +|.++..+++..+..+|....-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~-L~-~v-iP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPY-LP-QV-IPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhH-HH-HH-hHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455677888888664221 222344444444422 111111 11 23 78888888877667777665555444
No 342
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=67.34 E-value=1e+02 Score=36.51 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=115.0
Q ss_pred HHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccccccHHHHHhcCcHH--HHHHHHcCCCCHH
Q 046850 417 ELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDNNKILIMAAGAID--SIIEVLQSGKTME 493 (686)
Q Consensus 417 ~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~--~Lv~lL~~~~~~e 493 (686)
.|.+....++++...+.+.|++..+...+.. ...+.+..++..|.|++...+.+........+. .+-..+..-.+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778888899999999999999999999986 567889999999999998776654444322222 3333333331337
Q ss_pred HHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHH-HHHHhc-
Q 046850 494 ARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPL-LIELLM- 571 (686)
Q Consensus 494 ~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~-Ll~lL~- 571 (686)
.-.+|+++|..+....+. ... .+.-+..-+++. .+ .........+++....+.+ +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~-~~~r~~~~~~l~-----------e~---i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTE-CVFRNSVNELLV-----------EA---ISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Ccc-ccchHHHHHHHH-----------HH---hhccCccceeehhhhhcchhHHHHhcc
Confidence 788888888888766543 111 222222222211 11 1122222222333333333 444453
Q ss_pred CCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHH
Q 046850 572 DDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLL 627 (686)
Q Consensus 572 ~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L 627 (686)
+..+..+--|+.++.++.. .++....+.+.++ ++.+..+-.. .....++.+..++
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNG-FELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccc-hhhhhhcchhHHHHHHHHHHHHHh
Confidence 3456677778888888876 5566666677776 6776653321 2344555555554
No 343
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=66.95 E-value=1.6e+02 Score=34.01 Aligned_cols=77 Identities=9% Similarity=0.113 Sum_probs=46.4
Q ss_pred hchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhccCCchhHHHhhhH------HHHHHHHH
Q 046850 42 MRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCKDGSSLWGLMQIE------LVSNQFYV 115 (686)
Q Consensus 42 k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyll~~~~------~i~~~f~~ 115 (686)
+++-.+..+++..+.--++||...+. .|..-..|+.-+..|..+..+.+.+... |.++.++ .+...+..
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~ 255 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGE 255 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHH
Confidence 45567788899999999999987762 3444555666666666666666655433 2222332 34555555
Q ss_pred HHHHHHHH
Q 046850 116 LVKEMGRA 123 (686)
Q Consensus 116 ~~~~l~~~ 123 (686)
+.+.+...
T Consensus 256 ~~~~l~~~ 263 (563)
T TIGR00634 256 AQLALASV 263 (563)
T ss_pred HHHHHHHh
Confidence 55554443
No 344
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=66.50 E-value=3.7 Score=42.04 Aligned_cols=44 Identities=30% Similarity=0.623 Sum_probs=33.2
Q ss_pred CCcccccCcccCc----CceEccCcccccHHhHHHHHhhCCCCCCCCCc
Q 046850 282 DEFRCPISLDLMR----DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQ 326 (686)
Q Consensus 282 ~~~~Cpic~~~m~----dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~ 326 (686)
.++-||||.+.+. +|...+|||+-=..|++.....+ .+||.|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 3456999998663 56667999987666666666665 99999977
No 345
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.00 E-value=4.6 Score=42.52 Aligned_cols=52 Identities=31% Similarity=0.574 Sum_probs=42.2
Q ss_pred CCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCC
Q 046850 282 DEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALI 334 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~ 334 (686)
....|.+++..|.+||.+.-|..|+-..|..|++. +.+-|.+++++...++.
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLI 90 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLI 90 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccce
Confidence 35689999999999999999999999999999996 55666666666544443
No 346
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=65.72 E-value=6.7 Score=35.45 Aligned_cols=43 Identities=21% Similarity=0.453 Sum_probs=31.7
Q ss_pred CcccccCcccCcC--ceE-ccCccc------ccHHhHHHHHhhCCCCCCCCCc
Q 046850 283 EFRCPISLDLMRD--PVI-VASGHT------YDRNSIAQWINSGHHTCPKSGQ 326 (686)
Q Consensus 283 ~~~Cpic~~~m~d--Pv~-~~cght------~cr~ci~~w~~~~~~~CP~c~~ 326 (686)
...|.||.+...+ -|+ ++||.+ ||..|+.+|-+. +..-|.=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccc
Confidence 5689999987766 665 478765 899999999654 555666443
No 347
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=65.56 E-value=0.5 Score=37.41 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=22.6
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
+..||.|...|.. .-|+.+|..|-..+.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECcccccccee--cccCCCcccHHH
Confidence 4689999987643 3378888888554322 467999998874
No 348
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=63.98 E-value=4.2 Score=31.61 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=9.9
Q ss_pred cccHHhHHHHHhh
Q 046850 304 TYDRNSIAQWINS 316 (686)
Q Consensus 304 t~cr~ci~~w~~~ 316 (686)
.|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 349
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=63.75 E-value=5.8 Score=29.84 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=23.7
Q ss_pred cccccCcccC--cCceEc--cCcccccHHhHH
Q 046850 284 FRCPISLDLM--RDPVIV--ASGHTYDRNSIA 311 (686)
Q Consensus 284 ~~Cpic~~~m--~dPv~~--~cght~cr~ci~ 311 (686)
-.|++|.+.+ .|.+++ .||-.|=|.|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4899999999 678777 799999999943
No 350
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=63.38 E-value=20 Score=33.02 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=59.1
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccccc--HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN--KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSM 507 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~ 507 (686)
++..|.+-|.++++.++..|+.+|..+..+... ...+...+.+..|+.++....+..++..++..+.+-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 566777778889999999999999999988644 66777889999999999866588999999988887763
No 351
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.47 E-value=34 Score=35.58 Aligned_cols=136 Identities=17% Similarity=0.134 Sum_probs=81.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCch-hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHc
Q 046850 482 IIEVLQSGKTMEARENAAATIFSLSMIDD-CKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVA 560 (686)
Q Consensus 482 Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~ 560 (686)
.+..|.+. +.+.+..+...+..|+..+. .-.... ..+|-.+++-+++....+-+.|+.++..+.+.-.+.-.-
T Consensus 93 ~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--- 166 (334)
T KOG2933|consen 93 ALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--- 166 (334)
T ss_pred HHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34444555 56666666666666665542 111111 236777777788877788888999988887654332221
Q ss_pred CcHHHHHHHh----cCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 561 GAVPLLIELL----MDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 561 G~v~~Ll~lL----~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
....++..| ...+.-+++.|-.+|..+..+...... ++.|+..+++..+.++..++.+..+..
T Consensus 167 -~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~-------L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKL-------LRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHH-------HHHHHHHHhhhchhhhhhhhccccccc
Confidence 333444444 224566888888888888764443332 566776777777777776666554443
No 352
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=62.37 E-value=1e+02 Score=35.76 Aligned_cols=166 Identities=19% Similarity=0.133 Sum_probs=85.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccc-ccHHHHHhcCcHHHHHHHHcCC---CCHHHHHHHHHHHHHhccCch--
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKILIMAAGAIDSIIEVLQSG---KTMEARENAAATIFSLSMIDD-- 510 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~i~~~g~l~~Lv~lL~~~---~~~e~~~~aa~~L~~Ls~~~~-- 510 (686)
++..+..++.+....- ..|..+|..|.... ..-. ..+..+..+++.. .+..++..|+-++..|...--
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 3556667776643322 23445555554332 1111 2344444555432 145566666666666643210
Q ss_pred --------hhhHhhcCCCcHHHHHHhcc----cCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC---Cc
Q 046850 511 --------CKVMIGGRPRAIPALVGLLR----EGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDD---KA 575 (686)
Q Consensus 511 --------~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~---~~ 575 (686)
.+..... ...++.|...|. .++..-+..++.||+|+-.. ..++.|..++... +.
T Consensus 470 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCII-EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS---GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhH-HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 1111122 346667776665 34567788899999999432 3677777777544 56
Q ss_pred hhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHHHHH
Q 046850 576 GITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSITLL 627 (686)
Q Consensus 576 ~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L 627 (686)
.++..|+.+|..++...... + .+.+..++.+ .++++|-.|..+|
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~-------v-~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEK-------V-REILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHH-------H-HHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHH-------H-HHHHHHHhcCCCCChhHHHHHHHHH
Confidence 77778888888775422111 1 4667776665 3556777776554
No 353
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=62.36 E-value=49 Score=30.03 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=58.4
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc---CCHHHHHHHHHHHHHHHhccc
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD---GSLKARRKADALLRLLNRCCS 679 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~---~~~~~k~~A~~lL~~l~~~~~ 679 (686)
+..|.+-|.++++.++..|+.+|-.+..+.+......+.. ...+..|+.++.+ .++.+|+++..+++.......
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6777777888999999999999999999988777666665 4566678888876 367899998888877665443
No 354
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=62.28 E-value=1.5e+02 Score=32.16 Aligned_cols=133 Identities=18% Similarity=0.120 Sum_probs=83.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc--c--------CChHHHHHHHHHHHHhcC
Q 046850 480 DSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR--E--------GTTAGKKDAATALFNLAV 549 (686)
Q Consensus 480 ~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~--------~~~~~~~~Al~aL~nLs~ 549 (686)
..|+.+|..|.....+..+..++.-||.....-..+.. ..-.+.|..+.. . .+..+...|+++|+|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~-~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTN-DQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccc-hHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 34677888774456677788888888877644433333 333444444321 1 123788999999999999
Q ss_pred CCC-cHHHHHHcCcHHHHHHHhcC-----CCchhHHHHHHHHHHHh-CChhcHHH-HHhCCCChHHHHHHHhc
Q 046850 550 YNA-NKASVVVAGAVPLLIELLMD-----DKAGITDDALAVLALLL-GCREGLEE-IRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 550 ~~~-~~~~iv~~G~v~~Ll~lL~~-----~~~~v~~~al~~L~nLa-~~~~~~~~-i~~~~~~i~~Lv~lL~~ 614 (686)
++. .+....+...+..+++.+.. ....+.-.-++.|..|. -.+..|.+ +.+.++ ++.+.+++..
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G-l~~lt~~led 198 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG-LELLTNWLED 198 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc-cHHHHHHhhc
Confidence 886 66777777777777777621 12233333455555553 24455555 455666 8888888875
No 355
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=62.08 E-value=1.8e+02 Score=29.22 Aligned_cols=140 Identities=20% Similarity=0.153 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHH
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASV 557 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~i 557 (686)
++.++.-+....+.+.......+|..++..+ .+. .-++..|..+...+..+...-+...+..+-..++-.-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~------~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV------PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch------hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 3455555666558899999999999999887 222 3356677777777766665666677666665443211
Q ss_pred HHcCcHHHHHHHh--c-----CCC---chhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHH-hcCChHHHHHHHHH
Q 046850 558 VVAGAVPLLIELL--M-----DDK---AGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLL-RFGSAKGKENSITL 626 (686)
Q Consensus 558 v~~G~v~~Ll~lL--~-----~~~---~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL-~~~s~~~ke~A~~~ 626 (686)
|.+..++..+ . .+. ....-.....+..+|...... ... +++.|..++ +..++..+-.|+..
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~-ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVD-LLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHH-HHHHHHHHHhccccHHHHHHHHHH
Confidence 3444444441 0 111 122222344667777633331 112 378888899 77888999999999
Q ss_pred HHHhhccC
Q 046850 627 LLGLCKDG 634 (686)
Q Consensus 627 L~~L~~~~ 634 (686)
|..||...
T Consensus 146 l~~Lc~~~ 153 (234)
T PF12530_consen 146 LAPLCEAE 153 (234)
T ss_pred HHHHHHHh
Confidence 99999653
No 356
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=62.01 E-value=62 Score=27.82 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=50.2
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHH
Q 046850 435 AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATI 502 (686)
Q Consensus 435 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L 502 (686)
.+.+..|+...+.++....+.++..|..|..++.....+.+-|+.+-+-++=..- +...+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 4566777888888888889999999999999988888888999988865554433 555555444443
No 357
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=61.68 E-value=43 Score=31.55 Aligned_cols=143 Identities=13% Similarity=0.192 Sum_probs=78.6
Q ss_pred hHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 395 TAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 395 ~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
.++.|.+.|+.. ++.+++++++.|..+-.-++.-...+... .+.-. -...+........ ...+.+ ..-+..
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l-~~~~~~---~~~ee~ 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISL-PMMGIS---PSSEEY 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHH-hhccCC---CchHHH
Confidence 567778888844 68899999999988866444322211111 00000 0001111111111 111111 123334
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD--CKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
.-..++..|+.+|+++.-......++.++.++..... ....+ ..++|.+++.+++.+...++.-+.-|..|.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L---~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL---PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH---HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4445788899999987433444556666666653332 22333 458999999999777777777666666553
No 358
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=61.29 E-value=23 Score=27.90 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHhhcccccccCCCCCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 046850 158 AKELHRRDDLLEIMTSNNEKNIKNKGFIDMGRLKEILSSIGLTSPLDYEEEISKLEA 214 (686)
Q Consensus 158 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~E~~~l~~ 214 (686)
..+.++.+-|..-+. +++..| .++.|++.+|+.|......-+.+|++
T Consensus 6 ~rQ~~vL~~I~~~~~-------~~G~~P---t~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 6 ERQKEVLEFIREYIE-------ENGYPP---TVREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHHHHHHHH-------HHSS------HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HcCCCC---CHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 344555566666554 467766 78889999999999999999998886
No 359
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=60.98 E-value=89 Score=36.52 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=125.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc--cc-HHH
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD--NN-KIL 472 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~--~~-k~~ 472 (686)
..++...+++|....++.|+..| ...++- .....+..|+.+.......-...|+.+|..|-++. ++ +-+
T Consensus 198 ~k~l~siiSsGT~~DkitA~~Ll---vqesPv-----h~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk 269 (988)
T KOG2038|consen 198 AKWLYSIISSGTLTDKITAMTLL---VQESPV-----HNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLK 269 (988)
T ss_pred HHHHHHHHhcCcchhhhHHHHHh---hcccch-----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhH
Confidence 45677777888777777655443 333331 22235677777777664444445555554443321 11 222
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
.+....+..|. +. ...-+..++|+. .+..+... ..+|..|..+-...-+.++..|+..+++|..+.+
T Consensus 270 ~f~qrp~~~l~----~~-~~~~k~Ll~Wyf-----E~~LK~ly---~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kP 336 (988)
T KOG2038|consen 270 YFSQRPLLELT----NK-RLRDKILLMWYF-----EHELKILY---FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKP 336 (988)
T ss_pred HHhhChhhhcc----cc-ccccceehHHHH-----HHHHHHHH---HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCc
Confidence 22221111111 11 112233333332 22234444 3478888888777778999999999999988776
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHh-CChhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLL-GCREGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSITLLLG 629 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa-~~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L~~ 629 (686)
-... .++..|+.-|.++...+...|...|.+|. .+|.-+..+ +.-+.+++.. .+.+.+-+|+-.|..
T Consensus 337 EqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv------i~EIer~~FRpn~~~ra~Yyav~fLnQ 406 (988)
T KOG2038|consen 337 EQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV------IDEIERLAFRPNVSERAHYYAVIFLNQ 406 (988)
T ss_pred HHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh------HHHHHHHHcccCccccceeehhhhhhh
Confidence 4433 24566788888888889999998888884 566544332 3445555443 456677788888877
Q ss_pred hhc-cChHHHHHHHHc
Q 046850 630 LCK-DGGEEVARRLLI 644 (686)
Q Consensus 630 L~~-~~~~~~~~~l~~ 644 (686)
+.- +...+++..|+.
T Consensus 407 ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 407 MKLSHKESDVANRLIS 422 (988)
T ss_pred hHhccchHHHHHHHHH
Confidence 653 333455555554
No 360
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=60.97 E-value=22 Score=30.19 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=53.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSI 465 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~ 465 (686)
.....+..|.++.+-+|..|+..|+.+..... ...+-..+++..+...|+++|+-+--+|+..|..|+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 34566778888888899999999999998554 1122224567777788899999999999999988875
No 361
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.59 E-value=29 Score=31.90 Aligned_cols=71 Identities=14% Similarity=0.008 Sum_probs=59.7
Q ss_pred CcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHHHHhcC------CCchhHHHHHHHHHHHhC
Q 046850 520 RAIPALVGLLREGTTAGKKDAATALFNLAVYNA--NKASVVVAGAVPLLIELLMD------DKAGITDDALAVLALLLG 590 (686)
Q Consensus 520 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll~lL~~------~~~~v~~~al~~L~nLa~ 590 (686)
.++..|..-|.++++.+...|+.+|-.+..+.+ .+..+.+.+.+.-|++++.. .+..++..++.++...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999998765 66777888999999999953 467899999998888864
No 362
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.43 E-value=88 Score=39.39 Aligned_cols=142 Identities=10% Similarity=0.138 Sum_probs=90.2
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhhhH
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-DDCKVM 514 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~~~~ 514 (686)
+.+..++..|..+...++..|+.+|.++..-+.. .+....+-..+-.-+.+. +..+|+.|+..++..... ++...+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhccHHHHHH
Confidence 4567777888888899999999999998754433 111222333344445555 788999999998855332 222222
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHH
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALL 588 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nL 588 (686)
+ -..+.+-+.+....+++.++..+.-+|...++-..+++. ...++....++...+++.+..++.++
T Consensus 893 y------Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~--cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 893 Y------YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM--CAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred H------HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH--HHHHHHHhccchhHHHHHHHHHHHHH
Confidence 2 223444555666789999999999999887766655431 22222233444555777777777766
No 363
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=60.36 E-value=1.9e+02 Score=29.77 Aligned_cols=102 Identities=23% Similarity=0.203 Sum_probs=53.6
Q ss_pred HHHHhCCHH-HHHHhhcC--CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Q 046850 431 IIAEAGAIP-FLVTLLSS--HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSG-KTMEARENAAATIFSLS 506 (686)
Q Consensus 431 ~i~~~g~i~-~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~-~~~e~~~~aa~~L~~Ls 506 (686)
.+++.++++ -|+.+|.+ +++.+...++.+|.+|+.--+- + .... .+...+.........+
T Consensus 35 ~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~------------~---~~~~~~~~~~~~~~~~l~~~l- 98 (266)
T PF04821_consen 35 QLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL------------L---VESQPKDKNQRRNIPELLKYL- 98 (266)
T ss_pred HHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH------------h---ccCCCCChHHHHHHHHHHHHH-
Confidence 333333433 35554433 4788999999999999862110 0 1110 1222232222222222
Q ss_pred cCchhhhHhhcCCCcHHHHHHhccc-----------CChHHHHHHHHHHHHhcCCC
Q 046850 507 MIDDCKVMIGGRPRAIPALVGLLRE-----------GTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 507 ~~~~~~~~i~~~~g~i~~Lv~lL~~-----------~~~~~~~~Al~aL~nLs~~~ 551 (686)
..+|..+.. .+++..++.++.. .+..+.+..+..+.|+..-+
T Consensus 99 --~~yK~afl~-~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip 151 (266)
T PF04821_consen 99 --QSYKEAFLD-PRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIP 151 (266)
T ss_pred --HHHHHHHcc-cHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 135666766 7777777766532 12255666777777776543
No 364
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=59.81 E-value=4.3 Score=30.59 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCcccccCcccCcCceEccCcccccHHhHHHHHhh-CCCCCCCCCc
Q 046850 282 DEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS-GHHTCPKSGQ 326 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~-~~~~CP~c~~ 326 (686)
+.|.||.|.+.+.. ..+...+....... ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 46899999984332 12444454444443 3467999975
No 365
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.42 E-value=5.5 Score=40.30 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.5
Q ss_pred ccccHHhHHHHHhh------------CCCCCCCCCcccc
Q 046850 303 HTYDRNSIAQWINS------------GHHTCPKSGQRLI 329 (686)
Q Consensus 303 ht~cr~ci~~w~~~------------~~~~CP~c~~~l~ 329 (686)
.-.|++|+-+||.. |..+||.|++.+-
T Consensus 327 p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 34578999999974 6678999998864
No 366
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.08 E-value=51 Score=37.97 Aligned_cols=106 Identities=21% Similarity=0.129 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhC-----CCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHH
Q 046850 563 VPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKC-----RVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEE 637 (686)
Q Consensus 563 v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~-----~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~ 637 (686)
...+..+|.+.+-.++-..+.+.+|+..+-....++.++ ..++..|++-+...+|-.|..|+.++..+|..+..-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 456778888888888888888888887532222233331 112444555555578999999999999998754321
Q ss_pred HHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 046850 638 VARRLLINPRSIPSLQSLTTDGSLKARRKADALLR 672 (686)
Q Consensus 638 ~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~ 672 (686)
.... +.++.....-+++.+..+|++|..+..
T Consensus 381 ~~~r----~ev~~lv~r~lqDrss~VRrnaikl~S 411 (1128)
T COG5098 381 VGRR----HEVIRLVGRRLQDRSSVVRRNAIKLCS 411 (1128)
T ss_pred cchH----HHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 1111 224666777788889999999987654
No 367
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.01 E-value=48 Score=36.66 Aligned_cols=176 Identities=16% Similarity=0.089 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc-C
Q 046850 494 ARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLM-D 572 (686)
Q Consensus 494 ~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~-~ 572 (686)
-+..-++.+..+...........- ..++..+..-..+++...+..|+..|.|.++..+.+.+=-..-.+..++.-|. .
T Consensus 233 ~ritd~Af~ael~~~~~l~~~~lL-~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~ 311 (533)
T KOG2032|consen 233 GRITDIAFFAELKRPKELDKTGLL-GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD 311 (533)
T ss_pred chHHHHHHHHHHhCcccccccccH-HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC
Confidence 345555555555544322211111 22344444444566678899999999999998543332222233444444443 4
Q ss_pred CCchhHHHHHHHHHHHhCChhcHHHHHhCCC--ChHHHHHHHhcCChHHHHHHHHH---HHHhhccChHHHHHHHHcCCC
Q 046850 573 DKAGITDDALAVLALLLGCREGLEEIRKCRV--LVPLLIDLLRFGSAKGKENSITL---LLGLCKDGGEEVARRLLINPR 647 (686)
Q Consensus 573 ~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~--~i~~Lv~lL~~~s~~~ke~A~~~---L~~L~~~~~~~~~~~l~~~~g 647 (686)
.+.+++-.++.+|..+.....+.+. .... ..-.+..+..+..+..+-+|... |..+|..+.+......+. +
T Consensus 312 ~~~~V~leam~~Lt~v~~~~~~~~l--~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~--k 387 (533)
T KOG2032|consen 312 LNEEVQLEAMKCLTMVLEKASNDDL--ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVK--K 387 (533)
T ss_pred CccHHHHHHHHHHHHHHHhhhhcch--hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHH--h
Confidence 4677777788877777653333221 1121 02344456666777777776554 455565554433332222 2
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 648 SIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 648 ~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
-..+|+-.+.+.+|.+-+.....++.+
T Consensus 388 ~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 388 RLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred ccccceeeeCCCChHHHHHHHHHHHhc
Confidence 245566666777776655555555543
No 368
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=58.85 E-value=11 Score=27.01 Aligned_cols=39 Identities=8% Similarity=0.329 Sum_probs=21.6
Q ss_pred cccCcccCcCceEc---cCcccccHHhHHHHHhhCCC-CCCCC
Q 046850 286 CPISLDLMRDPVIV---ASGHTYDRNSIAQWINSGHH-TCPKS 324 (686)
Q Consensus 286 Cpic~~~m~dPv~~---~cght~cr~ci~~w~~~~~~-~CP~c 324 (686)
|-+|.++...-+.= .|+-.+=..|+..+|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56677766655543 48877888999999987433 69987
No 369
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.31 E-value=43 Score=30.66 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=57.8
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHH---HHHHHHHHHHHHHhcc
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLK---ARRKADALLRLLNRCC 678 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~---~k~~A~~lL~~l~~~~ 678 (686)
+..|.+-|.++++.++..|+.+|-.+..|.+......+.. ..++..|..++.+. +.. +|+++..++.......
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6677778888999999999999999999988887777766 56788899988766 433 7888877777665544
No 370
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.28 E-value=1.3e+02 Score=38.09 Aligned_cols=146 Identities=10% Similarity=0.052 Sum_probs=90.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~ 472 (686)
+.+..++..|.++...++.+|+++|..+..-++.... ...+-..+..-+......+++.|+..++......+. -.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 6778888899999999999999999999876654322 112222334445556788999999999865432211 111
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
+...+..-+.+. ...+|..+..++..++...+.=..+.+ +...++.-..++...+++.+..++.++...+
T Consensus 893 -----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 893 -----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred -----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 123344444444 678999999999999876544333322 2222233333333346777777777776543
No 371
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=19 Score=35.13 Aligned_cols=44 Identities=14% Similarity=0.321 Sum_probs=36.1
Q ss_pred ccccCcccC--cCceEccCcccccHHhHHHHHhh-------CCCCCCCCCccc
Q 046850 285 RCPISLDLM--RDPVIVASGHTYDRNSIAQWINS-------GHHTCPKSGQRL 328 (686)
Q Consensus 285 ~Cpic~~~m--~dPv~~~cght~cr~ci~~w~~~-------~~~~CP~c~~~l 328 (686)
-|.+|...+ .|.+-+.|-|-|-..|+..|-.. ....||.|.+.+
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 688888776 47777899999999999999875 346899998764
No 372
>PF14353 CpXC: CpXC protein
Probab=57.17 E-value=6.6 Score=35.47 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=29.0
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhh--CCCCCCCCCcccc
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS--GHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~--~~~~CP~c~~~l~ 329 (686)
+.+||-|+..+.-.+-..-.-.....-.++-+.. ...+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3589999998877664433323334444444432 2368999998753
No 373
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.11 E-value=40 Score=28.54 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHH
Q 046850 563 VPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARR 641 (686)
Q Consensus 563 v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~ 641 (686)
....+..|.++.+.++..++..|..|..... ..+......+..+...|+..++=+--+|+..|..|+...+..+...
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 3445666788888999999999999987555 1222211214445556666777789999999999998765444333
No 374
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=56.69 E-value=30 Score=31.44 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=55.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccccc--HHHHHhcCcHHHHHHHHcCCCCHH-HHHHHHHHHHHhcc
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN--KILIMAAGAIDSIIEVLQSGKTME-ARENAAATIFSLSM 507 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~e-~~~~aa~~L~~Ls~ 507 (686)
++..|-+-|.++++.++..|+.+|-.+..+... ...+...+.+..|+.++....+.. ++..+..++.+-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 445566667789999999999999999988644 667777889999999998865544 88888888877654
No 375
>PRK10869 recombination and repair protein; Provisional
Probab=56.42 E-value=3.6e+02 Score=30.98 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=33.8
Q ss_pred chHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhcc
Q 046850 43 RNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCK 95 (686)
Q Consensus 43 ~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 95 (686)
++..+..+++..|.--++||...+. .|..-.-|+.-+..|..+..+.+.+.
T Consensus 178 ~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L~n~e~i~~~~~ 228 (553)
T PRK10869 178 QQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRLANSGQLLTTSQ 228 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888999999999987762 34444555555556666666655554
No 376
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=56.18 E-value=7 Score=37.83 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=36.5
Q ss_pred CcccccCcccCcCceE-ccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLMRDPVI-VASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~-~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
-..|.+|..+.-.-+- -+||-.|-+.|++.++.. ...||.|+--.+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 3589999998766543 378888999999999987 889999975443
No 377
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=6.5 Score=42.73 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=40.8
Q ss_pred CCcccccCc-ccCcCce---EccCcccccHHhHHHHHhh-----CCCCCCC--CCccccCCC---CCCcHHHHHHHHHHH
Q 046850 282 DEFRCPISL-DLMRDPV---IVASGHTYDRNSIAQWINS-----GHHTCPK--SGQRLIHMA---LIPNYTLKSLLHQWC 347 (686)
Q Consensus 282 ~~~~Cpic~-~~m~dPv---~~~cght~cr~ci~~w~~~-----~~~~CP~--c~~~l~~~~---l~~n~~l~~~i~~~~ 347 (686)
....|.||. +.+...- +..|||.||..|+.+++.. ....||. |...++... +.++ .++.+.++..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~ 223 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRL 223 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHH
Confidence 357899999 4433211 3479999999999999984 2356775 333343322 2232 3455555554
Q ss_pred HhCC
Q 046850 348 QDNN 351 (686)
Q Consensus 348 ~~~~ 351 (686)
.+.-
T Consensus 224 ~e~~ 227 (384)
T KOG1812|consen 224 KEEV 227 (384)
T ss_pred HHHh
Confidence 4433
No 378
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.72 E-value=3.7e+02 Score=30.88 Aligned_cols=199 Identities=20% Similarity=0.089 Sum_probs=100.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccccccH----HHHHhcC---cHHHHHHHHcCCC-CH-HHHHHHHHHHHHhccC
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK----ILIMAAG---AIDSIIEVLQSGK-TM-EARENAAATIFSLSMI 508 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k----~~i~~~g---~l~~Lv~lL~~~~-~~-e~~~~aa~~L~~Ls~~ 508 (686)
+-.|+.+|+.-+.+-.+....-+.. .. ...+ +.+...| ++..+.+.+.++. +. ++......++..+...
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P 390 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP 390 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC
Confidence 4456677766555544444444333 11 1122 3333334 6777777777762 21 2222222222222111
Q ss_pred chhhhHhhcCCCcHHHHHHhcccC----ChHHHHHHHHHHHHhcC----CCCcHHHHHHcCcHHHHHHHhc----CCCch
Q 046850 509 DDCKVMIGGRPRAIPALVGLLREG----TTAGKKDAATALFNLAV----YNANKASVVVAGAVPLLIELLM----DDKAG 576 (686)
Q Consensus 509 ~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~Al~aL~nLs~----~~~~~~~iv~~G~v~~Ll~lL~----~~~~~ 576 (686)
....+..+.+++.++ .+.+...|+-++++|.. +.+.+...+....++.+...|. ..+..
T Consensus 391 ---------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 391 ---------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred ---------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 133566667777653 34566666666666653 3332222233345666666653 23333
Q ss_pred hHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc---CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHH
Q 046850 577 ITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF---GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQ 653 (686)
Q Consensus 577 v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~---~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~ 653 (686)
-+..++.+|+|+.. +. . ++.+..++.. .+..+|-.|+.+|..++...+... .+.|+
T Consensus 462 ~~~~~LkaLGN~g~-~~---------~-i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v----------~~~l~ 520 (574)
T smart00638 462 EIQLYLKALGNAGH-PS---------S-IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV----------QEVLL 520 (574)
T ss_pred heeeHHHhhhccCC-hh---------H-HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH----------HHHHH
Confidence 44456666766643 11 1 4555555542 356789999999988875443332 44555
Q ss_pred HHHhcC--CHHHHHHHH
Q 046850 654 SLTTDG--SLKARRKAD 668 (686)
Q Consensus 654 ~Ll~~~--~~~~k~~A~ 668 (686)
.+..+. ++++|-.|.
T Consensus 521 ~i~~n~~e~~EvRiaA~ 537 (574)
T smart00638 521 PIYLNRAEPPEVRMAAV 537 (574)
T ss_pred HHHcCCCCChHHHHHHH
Confidence 666665 445554443
No 379
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=55.30 E-value=2.7e+02 Score=32.19 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHhhcCCCHHHHHHHHHHhhccccccccHHHHH----hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc
Q 046850 442 VTLLSSHDPRIQENAVTALLNLSIFDNNKILIM----AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG 517 (686)
Q Consensus 442 v~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~----~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~ 517 (686)
+.++..-..+.+--|+.+|.-+..+...-..+. .+..+..++..+. + +..-+..++++|.|+..+...+..+..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344445566667777777776665544322222 2235556666665 4 567788899999999998777766654
Q ss_pred CCCcHHHHHHhc---ccCC-hHHHHHHHHHHHHhcC--CCCcHHHHHHcCcHHHHHHHhc---CC--CchhHHHHHHHHH
Q 046850 518 RPRAIPALVGLL---REGT-TAGKKDAATALFNLAV--YNANKASVVVAGAVPLLIELLM---DD--KAGITDDALAVLA 586 (686)
Q Consensus 518 ~~g~i~~Lv~lL---~~~~-~~~~~~Al~aL~nLs~--~~~~~~~iv~~G~v~~Ll~lL~---~~--~~~v~~~al~~L~ 586 (686)
. ...+...+ +..+ ..+...-.....|++. ...+-+ .|..+.|...+. ++ +-+..-..+.+|.
T Consensus 628 ~---~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 628 R---LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALG 700 (745)
T ss_pred H---HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 2 22222222 2222 3444443333444442 222111 455555555542 22 3334556777888
Q ss_pred HHhCChhcHHHHHhCCCChHHHHHHHhc
Q 046850 587 LLLGCREGLEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 587 nLa~~~~~~~~i~~~~~~i~~Lv~lL~~ 614 (686)
+|+..+....++.+.-. +..++.-++.
T Consensus 701 tL~t~~~~~~~~A~~~~-v~sia~~~~~ 727 (745)
T KOG0301|consen 701 TLMTVDASVIQLAKNRS-VDSIAKKLKE 727 (745)
T ss_pred hhccccHHHHHHHHhcC-HHHHHHHHHH
Confidence 88888878888777667 8888887766
No 380
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.25 E-value=31 Score=31.65 Aligned_cols=72 Identities=26% Similarity=0.262 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhcC-CCHH---HHHHHHHHhhccc
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLSS-HDPR---IQENAVTALLNLS 464 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~s-~~~~---~~~~A~~aL~nLs 464 (686)
+..+..|.+.|+++++.+|..|+..|-.+.+.. +.....+....++..|..++.+ .... +++.++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999865 4556667777788888887764 3333 7888887776654
No 381
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=54.74 E-value=2.6e+02 Score=34.14 Aligned_cols=151 Identities=14% Similarity=0.205 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhccCCchhH--HHhhhHHHHHHHHHHHHHHHHHhhcCCCCccc--ccHHHHHHHHHHHHHHHH---hh
Q 046850 81 FSVIRRVKLLIQGCKDGSSLW--GLMQIELVSNQFYVLVKEMGRALDILPLSLLN--ITADIREQVELLHRQAKR---AE 153 (686)
Q Consensus 81 ~~~l~~ak~Ll~~c~~~Skly--ll~~~~~i~~~f~~~~~~l~~~L~~lp~~~l~--~s~ev~e~v~~~~~~~~~---~~ 153 (686)
...|+..|.+++. |+. -+++|+.-+.+ +.++..| ++|..||...-. ||.+.++||..++.++.. |-
T Consensus 1014 K~QMDaIKqmIek-----Kv~L~~L~qCqdALeK-qnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV 1086 (1439)
T PF12252_consen 1014 KAQMDAIKQMIEK-----KVVLQALTQCQDALEK-QNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAV 1086 (1439)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh-hhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777765 332 35555554443 4444444 567777765422 999999999999887553 32
Q ss_pred hccC-hhhhHHHHHHHHHHhhc--ccccccCCCCCChHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhcCCCCcchhhh
Q 046850 154 LFVD-AKELHRRDDLLEIMTSN--NEKNIKNKGFIDMGRLKEILSSIGLTSPLDYEEEISKLEAEAQKQAGTGGLIVVSN 230 (686)
Q Consensus 154 ~~~~-~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~ 230 (686)
...- ..++..+.....+|..- +=..+++..-++.+..++....| ..|++|+.-|+.|+.++....++-+.+-
T Consensus 1087 ~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~l-----nnlqqElklLRnEK~Rmh~~~dkVDFSD 1161 (1439)
T PF12252_consen 1087 VTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANL-----NNLQQELKLLRNEKIRMHSGTDKVDFSD 1161 (1439)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH-----HHHHHHHHHHHhHHHhhccCCCcccHHH
Confidence 2221 12223333332222100 10113443334555555544433 4788999999999988776656667777
Q ss_pred HHhHHHHHhhhhh
Q 046850 231 INNLISLVSFSKS 243 (686)
Q Consensus 231 ~~~l~~ll~~~~~ 243 (686)
++.|-.-|..++.
T Consensus 1162 IEkLE~qLq~~~~ 1174 (1439)
T PF12252_consen 1162 IEKLEKQLQVIHT 1174 (1439)
T ss_pred HHHHHHHHHHhhh
Confidence 7777766654444
No 382
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=54.15 E-value=3.2e+02 Score=29.61 Aligned_cols=216 Identities=13% Similarity=0.025 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHhhccccccccHHHHHhc---CcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHH
Q 046850 449 DPRIQENAVTALLNLSIFDNNKILIMAA---GAIDSIIEVLQSGK-TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPA 524 (686)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~~~k~~i~~~---g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~ 524 (686)
+..+..+|+.+|..+-.+..--..+-.. -.+...+..+..+. +..+....+++|..=... ..+.. ...+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~----~~~~~-~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS----PKIMT-SDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC----Ccccc-hhhHHH
Confidence 6678889999998887654443333321 14556666775553 334444444444332222 12222 334444
Q ss_pred HHHhcc-----cCChHHHHHHHHHHHHhcCCCCcHHHHHHc-C-cHHHHHHHhcCCCchhHHHHHHHHHHHhC--Ch--h
Q 046850 525 LVGLLR-----EGTTAGKKDAATALFNLAVYNANKASVVVA-G-AVPLLIELLMDDKAGITDDALAVLALLLG--CR--E 593 (686)
Q Consensus 525 Lv~lL~-----~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~-G-~v~~Ll~lL~~~~~~v~~~al~~L~nLa~--~~--~ 593 (686)
++..+. -++..+...++.++.+|....+. .|+.. + -++.++..+-+....++..|..++..++. .+ .
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHH
Confidence 444432 24557788889999988876543 23332 2 46777777766677787777776666642 11 1
Q ss_pred cH---HHHHhCCC--------ChHHHHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCH
Q 046850 594 GL---EEIRKCRV--------LVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSL 661 (686)
Q Consensus 594 ~~---~~i~~~~~--------~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~ 661 (686)
.. ..+.+... ..+.|.+++.. +....--..+.++..|-.....+.-..+ ...+.....-..++++
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~---n~wL~v~e~cFn~~d~ 288 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL---NEWLKVPEKCFNSSDP 288 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH---hHHHHHHHHHhcCCCH
Confidence 11 11222111 12335556655 4444444555555555543211111111 1123333334455677
Q ss_pred HHHHHHHHHHHHH
Q 046850 662 KARRKADALLRLL 674 (686)
Q Consensus 662 ~~k~~A~~lL~~l 674 (686)
.+|..|-..=+.+
T Consensus 289 ~~k~~A~~aW~~l 301 (372)
T PF12231_consen 289 QVKIQAFKAWRRL 301 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 7777775544443
No 383
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=52.85 E-value=15 Score=34.12 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=31.8
Q ss_pred CcccccCcccCcCceEccCccc-----ccHHhHHHHHhh-CCCCCCCCCcccc
Q 046850 283 EFRCPISLDLMRDPVIVASGHT-----YDRNSIAQWINS-GHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght-----~cr~ci~~w~~~-~~~~CP~c~~~l~ 329 (686)
+-.|-||.+--. +..-+|... .-++|+++|+.. +...||.|+.+..
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 447889987643 333455432 257899999987 4678999988753
No 384
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.28 E-value=13 Score=32.42 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHH
Q 046850 412 SQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQEN 455 (686)
Q Consensus 412 ~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~ 455 (686)
...++.+..++. .|+--..+++.|+++.|+.+|.++|.++...
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 345677778887 6788888999999999999999998876543
No 385
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=51.80 E-value=7.5 Score=28.22 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=20.6
Q ss_pred cCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 300 ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 300 ~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
...|-.|..|+...+.. ...||.|+.+++..
T Consensus 18 C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSR-SDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-SS-SSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhcc-ccCCCcccCcCccc
Confidence 44577799999988876 67899999998753
No 386
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=51.49 E-value=6.6 Score=36.33 Aligned_cols=24 Identities=33% Similarity=0.880 Sum_probs=18.7
Q ss_pred cCcccccHHhHHHHHhh----------CCCCCCCCCccc
Q 046850 300 ASGHTYDRNSIAQWINS----------GHHTCPKSGQRL 328 (686)
Q Consensus 300 ~cght~cr~ci~~w~~~----------~~~~CP~c~~~l 328 (686)
.+||.|+ .||.+ |..+||.|+..-
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 6789986 48874 668999998763
No 387
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=50.99 E-value=4.3e+02 Score=31.22 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=83.7
Q ss_pred hCCHHHHHHhhcC--------CCHHHHHHHHHHhhcccc--cccc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHH
Q 046850 435 AGAIPFLVTLLSS--------HDPRIQENAVTALLNLSI--FDNN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIF 503 (686)
Q Consensus 435 ~g~i~~Lv~lL~s--------~~~~~~~~A~~aL~nLs~--~~~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~ 503 (686)
+|.++.++..|.. +++.-.+-|+..+.++.. .... -.-+++.=+++.++..++++ ..-.+..|+.++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~-ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSN-YGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCc-ccchHHHHHHHHH
Confidence 5889999999832 234455667777777654 2222 33344555677777777887 7778888999888
Q ss_pred HhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHh
Q 046850 504 SLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELL 570 (686)
Q Consensus 504 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL 570 (686)
.++.+ .+..-.. ..+.+.....+++.+..+...|+-||..+..+.....++ .+.+.+.+-++|
T Consensus 486 ~~eeD--fkd~~il-l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~-sahVp~tmekLL 548 (970)
T COG5656 486 TIEED--FKDNGIL-LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKF-SAHVPETMEKLL 548 (970)
T ss_pred HHHHh--cccchHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHH-HhhhhHHHHHHH
Confidence 88332 2222222 346677777888877788889999999988877544443 333444444444
No 388
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=50.56 E-value=10 Score=32.82 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=16.5
Q ss_pred CceEc---cCcccccHHhHHHHHhh
Q 046850 295 DPVIV---ASGHTYDRNSIAQWINS 316 (686)
Q Consensus 295 dPv~~---~cght~cr~ci~~w~~~ 316 (686)
.||.+ +|+ |.||.|+++|-.-
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~I 87 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHGI 87 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhCC
Confidence 68876 454 6899999999764
No 389
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.19 E-value=15 Score=38.13 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhh-CCCCCCCCCcc
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS-GHHTCPKSGQR 327 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~-~~~~CP~c~~~ 327 (686)
=++.-.|-||-+-..---.++|||..|..|-.+...- ....||.|+..
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 3566789999987776667899999999997655432 46789999865
No 390
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=49.84 E-value=1.7e+02 Score=28.17 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=51.0
Q ss_pred CCcHHHHHHhcccCChHHHHHHHHHHHHhcCC-CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC
Q 046850 519 PRAIPALVGLLREGTTAGKKDAATALFNLAVY-NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC 591 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~ 591 (686)
.-.+|.+++=|.+....-+-.|...+..|... ...+-.=+=-.++.++-..|.+.++.+...++.+|..|+.+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 34677777777776655566666666666655 22332223346677788888889999999999999999654
No 391
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=49.79 E-value=66 Score=34.22 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhccCchhhhHhhc-CCCcHHHHHHhcccCC---hHHHHHHHHHHHHhcCCCCcHHHHHH-------cC
Q 046850 493 EARENAAATIFSLSMIDDCKVMIGG-RPRAIPALVGLLREGT---TAGKKDAATALFNLAVYNANKASVVV-------AG 561 (686)
Q Consensus 493 e~~~~aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~---~~~~~~Al~aL~nLs~~~~~~~~iv~-------~G 561 (686)
.+|..|.+.+..+.........+.. ....+..|+++++.++ ..++..|+.+|..|+....-...++. +|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 4577788888887777766666655 1349999999998764 38899999999999987764444433 45
Q ss_pred cHHHHHH
Q 046850 562 AVPLLIE 568 (686)
Q Consensus 562 ~v~~Ll~ 568 (686)
++..+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6666554
No 392
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.72 E-value=15 Score=42.32 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=35.6
Q ss_pred CCCCCCCcccccCcccCcCce----Ec---cCcccccHHhHHHHHhh-----CCCCCCCCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPV----IV---ASGHTYDRNSIAQWINS-----GHHTCPKSG 325 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv----~~---~cght~cr~ci~~w~~~-----~~~~CP~c~ 325 (686)
.+..++.-.|++|..-+.+|+ +. .|+|.+|-.||..|... .+..|+.|.
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 345667789999988887755 12 59999999999999885 233455553
No 393
>PLN02189 cellulose synthase
Probab=49.66 E-value=13 Score=44.90 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=35.8
Q ss_pred CcccccCcccC-----cCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLM-----RDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m-----~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34899999754 244433 577779999997777789999999987754
No 394
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.29 E-value=8.9 Score=41.91 Aligned_cols=69 Identities=17% Similarity=0.398 Sum_probs=48.9
Q ss_pred CCCCCcccccC-cccCcCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcc-ccCCCCCCcHHHHHHHHHHHHh
Q 046850 279 NIPDEFRCPIS-LDLMRDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQR-LIHMALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 279 ~~~~~~~Cpic-~~~m~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~-l~~~~l~~n~~l~~~i~~~~~~ 349 (686)
..++++.|++| ...|.+..++ .|+.+||..||.+.+.. ..||.|... .....+.++..++..+....+.
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a~ 287 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRILAS 287 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHHHhh
Confidence 56889999999 7899888876 89999999999988765 344444332 2223456677777666555443
No 395
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=49.25 E-value=79 Score=33.89 Aligned_cols=143 Identities=16% Similarity=0.108 Sum_probs=80.3
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC-------CHHHHHHHHHHhhccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH-------DPRIQENAVTALLNLSIF 466 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~-------~~~~~~~A~~aL~nLs~~ 466 (686)
.....+.+.+.+.+...+..|+..|+ . ++.- ...+|.++.++... +.......+..+..|..+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~---t-D~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLR---T-DPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhc---c-CCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 45566667776667776766655543 3 2211 12678888887542 455666666666777665
Q ss_pred cccHHHHHhcCcHHHHHHHHcCC---------CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-h-H
Q 046850 467 DNNKILIMAAGAIDSIIEVLQSG---------KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-T-A 535 (686)
Q Consensus 467 ~~~k~~i~~~g~l~~Lv~lL~~~---------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~-~ 535 (686)
..-.....=.-.++.++.++-.. .....|..|+.+|..++..-.....-.. ..++..|.+.|.+.+ + .
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~-~ri~~tl~k~l~d~~~~~~ 326 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQ-PRITRTLLKALLDPKKPLT 326 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHHcCCCCCcc
Confidence 54422222222678888776321 1468999999999999854322221122 334555665555433 2 2
Q ss_pred HHHHHHHHHHHh
Q 046850 536 GKKDAATALFNL 547 (686)
Q Consensus 536 ~~~~Al~aL~nL 547 (686)
...-|+..|..|
T Consensus 327 ~~YGAi~GL~~l 338 (343)
T cd08050 327 THYGAIVGLSAL 338 (343)
T ss_pred hhhHHHHHHHHh
Confidence 244455555544
No 396
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=49.17 E-value=19 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=22.2
Q ss_pred cCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 300 ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 300 ~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
+--.|||..|.+..+ +..||.|+-.+...
T Consensus 26 SfECTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 26 SFECTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred eEeCcccHHHHHHHh---cCcCcCCCCccccC
Confidence 334599999999877 46899999876543
No 397
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.67 E-value=8.9 Score=44.96 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCCCCCCCcccccCccc-CcCceEc-cCcccccHHhHHHHHhh
Q 046850 276 VLPNIPDEFRCPISLDL-MRDPVIV-ASGHTYDRNSIAQWINS 316 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~-m~dPv~~-~cght~cr~ci~~w~~~ 316 (686)
++..+...-.|-+|... +..|..+ +|||.|-+.|+.+....
T Consensus 810 ry~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 810 RYRVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ceEEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 34456667799999874 4567755 99999999999987654
No 398
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=48.47 E-value=3.2e+02 Score=28.03 Aligned_cols=163 Identities=12% Similarity=0.143 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhcccccc--------ccHHHHHhcCcHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCchhhhHhhcCC
Q 046850 451 RIQENAVTALLNLSIFD--------NNKILIMAAGAIDSIIEVLQSGK---TMEARENAAATIFSLSMIDDCKVMIGGRP 519 (686)
Q Consensus 451 ~~~~~A~~aL~nLs~~~--------~~k~~i~~~g~l~~Lv~lL~~~~---~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~ 519 (686)
...+.++.+|..|+... +++-.+.=.+.+|.++.-+.++. .......+|..|..++... . .
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-------~-~ 148 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-------G-L 148 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-------C-C
Confidence 34455566665554322 23333334467888888888873 1244556777787777321 1 1
Q ss_pred CcHHHHHHhcccCC----hHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcH
Q 046850 520 RAIPALVGLLREGT----TAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 520 g~i~~Lv~lL~~~~----~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
+.+..++.....+. .+....++..|..-...+ .+..++..|+.+|..+..-++...+.+|..+-...+-+
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 22333333333322 344555555555432211 12345667888888888899999999999997655444
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhc
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCK 632 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 632 (686)
.. ...+. +..|.+++++. .-..|..+|-+...
T Consensus 223 ~~-~~~dl-ispllrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 223 SP-HGADL-ISPLLRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred CC-cchHH-HHHHHHHhCCc---cHHHHHHHHHHHHh
Confidence 33 33344 78888888643 34456666655443
No 399
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=48.25 E-value=72 Score=27.40 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=51.4
Q ss_pred cCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHH
Q 046850 560 AGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLL 627 (686)
Q Consensus 560 ~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L 627 (686)
.+.+..|+.-+..++....+.++..|..|..++.+.+.+.+.|+ +..|.++=...++..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~-~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGA-VRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 45566777777777778999999999999999999999999998 77766665555666665555544
No 400
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=48.17 E-value=3.2e+02 Score=27.98 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=117.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhhhHhhcC
Q 046850 440 FLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGK-TMEARENAAATIFSLSMIDDCKVMIGGR 518 (686)
Q Consensus 440 ~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~ 518 (686)
.|-..|.++|+.+|..|+..|..+...-+. .. ....-+..|+.++.+.. +......++.++..|...........
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~-~~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-- 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPP-DF-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-- 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCH-hh-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH--
Confidence 455678889999999999888765433221 11 11222444444443321 34555555666666653332111110
Q ss_pred CCcHHHHHHhccc--CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc-CCCchhHHHHHHHHHHHhCChhcH
Q 046850 519 PRAIPALVGLLRE--GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLM-DDKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 519 ~g~i~~Lv~lL~~--~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~-~~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
...+..+.+-..- -....+..+...|..|..+......-...+.+..+++.+. +.+|.-...+..++..+...-+
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-- 156 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-- 156 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--
Confidence 1123333332221 2246777888888888766432222223356777777774 4577777777777777754222
Q ss_pred HHHHhCCCChHHHHHHHhc----------CCh--HHHHHHHHHHH-HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHH
Q 046850 596 EEIRKCRVLVPLLIDLLRF----------GSA--KGKENSITLLL-GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLK 662 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~----------~s~--~~ke~A~~~L~-~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~ 662 (686)
. ... ...+.+.+.. ++| -.++.-...|. .|++. +.... -++|.|++=+.++.+.
T Consensus 157 ---~-~~~-~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~--~~fa~------~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 157 ---I-SEF-AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST--PLFAP------FAFPLLLEKLDSTSPS 223 (262)
T ss_pred ---c-chh-HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc--HhhHH------HHHHHHHHHHcCCCcH
Confidence 1 112 3444444432 122 13333333333 34433 33322 2489999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 046850 663 ARRKADALLRLLNRCC 678 (686)
Q Consensus 663 ~k~~A~~lL~~l~~~~ 678 (686)
+|.-+...|..+-..+
T Consensus 224 ~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 224 VKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9988887777665544
No 401
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=48.08 E-value=3e+02 Score=27.57 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC------------------CchhHHHHHHHHHHHhCChhcH
Q 046850 534 TAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDD------------------KAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 534 ~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~------------------~~~v~~~al~~L~nLa~~~~~~ 595 (686)
..-...++..+..|...++....+...+.++.+...|..- ...+...-...++.++.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 5667778888889988888888888889888888887321 1123334456788889999999
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
+.+-+.+. ...+..++...+. .....-+|.+|=-..+.. .-..|-..+.+++..+|..|...|+.+
T Consensus 158 ~lLe~~~i-f~~l~~i~~~~~~--~~l~klil~~LDY~~~~~----------~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 158 KLLERWNI-FTMLYHIFSLSSR--DDLLKLILSSLDYSVDGH----------PRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHHHHCCH-HHHHHHHHccCch--HHHHHHHHhhCCCCCccH----------HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 98888887 7888888865422 222333444442221111 123445578889999999999988765
No 402
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=48.04 E-value=1.4e+02 Score=28.92 Aligned_cols=142 Identities=19% Similarity=0.169 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHH------------HhCCHHHHH-HhhcCCCHHHHHHHHHHhhccccccccHHHHHh-
Q 046850 410 IQSQAAYELRLLAKTGMDNRRIIA------------EAGAIPFLV-TLLSSHDPRIQENAVTALLNLSIFDNNKILIMA- 475 (686)
Q Consensus 410 ~q~~al~~L~~La~~~~~~r~~i~------------~~g~i~~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~- 475 (686)
++..|+..|..+++. .+.|.... ..+.-+.|+ .++.++++.++..|+.+|..|-.....--...+
T Consensus 2 vR~~Al~~L~al~k~-~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKS-TDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHh-cCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 456777788777774 12222211 112333444 466778999999999999887544322111111
Q ss_pred ----c---------------CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh-HhhcCCCcHHHHHHhcccCChH
Q 046850 476 ----A---------------GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV-MIGGRPRAIPALVGLLREGTTA 535 (686)
Q Consensus 476 ----~---------------g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~ 535 (686)
. ..-..|+..|..+.+.........+|..|.....+.. ..+-...++..+..++.+.++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 1234456666666567777788888888876654322 2211123455555667788889
Q ss_pred HHHHHHHHHHHhcCCCC
Q 046850 536 GKKDAATALFNLAVYNA 552 (686)
Q Consensus 536 ~~~~Al~aL~nLs~~~~ 552 (686)
++..++.++..|....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999888876543
No 403
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=47.86 E-value=21 Score=31.10 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHH
Q 046850 537 KKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITD 579 (686)
Q Consensus 537 ~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~ 579 (686)
...++..+..|+..++--..+++.|+++.|+.+|.+.+.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4557888899999999999999999999999999888776653
No 404
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.84 E-value=14 Score=34.57 Aligned_cols=31 Identities=13% Similarity=0.576 Sum_probs=24.8
Q ss_pred ccCcccccHHhHHHHHhh-----C-----CCCCCCCCcccc
Q 046850 299 VASGHTYDRNSIAQWINS-----G-----HHTCPKSGQRLI 329 (686)
Q Consensus 299 ~~cght~cr~ci~~w~~~-----~-----~~~CP~c~~~l~ 329 (686)
+.||+.|-.-|+..|++. . -..||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 389999999999999985 1 136999987764
No 405
>PHA02862 5L protein; Provisional
Probab=47.12 E-value=17 Score=33.15 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=30.7
Q ss_pred ccccCcccCcCceEccCccc-----ccHHhHHHHHhh-CCCCCCCCCcccc
Q 046850 285 RCPISLDLMRDPVIVASGHT-----YDRNSIAQWINS-GHHTCPKSGQRLI 329 (686)
Q Consensus 285 ~Cpic~~~m~dPv~~~cght-----~cr~ci~~w~~~-~~~~CP~c~~~l~ 329 (686)
.|=||.+-=.+.+ -+|..+ .-+.|+++|++. +...||.|+.+..
T Consensus 4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 5778877654442 455432 346899999986 5678999998764
No 406
>PLN02195 cellulose synthase A
Probab=45.94 E-value=15 Score=44.04 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=35.4
Q ss_pred ccccCcccC-----cCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 285 RCPISLDLM-----RDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 285 ~Cpic~~~m-----~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 799998733 356544 688889999997667779999999987765
No 407
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=45.72 E-value=17 Score=26.56 Aligned_cols=39 Identities=26% Similarity=0.635 Sum_probs=20.8
Q ss_pred cccCcccCc--CceEccCccc-----ccHHhHHHHHhh-CCCCCCCC
Q 046850 286 CPISLDLMR--DPVIVASGHT-----YDRNSIAQWINS-GHHTCPKS 324 (686)
Q Consensus 286 Cpic~~~m~--dPv~~~cght-----~cr~ci~~w~~~-~~~~CP~c 324 (686)
|-||++--. +|.+.+|+-+ .=+.|+.+|+.. +...|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 345554322 2566666532 245799999986 56778876
No 408
>PLN02436 cellulose synthase A
Probab=44.30 E-value=17 Score=43.92 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=35.9
Q ss_pred CcccccCcccC-----cCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLM-----RDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m-----~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 44899999754 245443 577779999997777789999999987754
No 409
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.94 E-value=5.5e+02 Score=29.46 Aligned_cols=130 Identities=18% Similarity=0.067 Sum_probs=74.2
Q ss_pred cHHHHHHHHcCCC---CHHHHHHHHHHHHHhcc----CchhhhHhhcCCCcHHHHHHhccc----CChHHHHHHHHHHHH
Q 046850 478 AIDSIIEVLQSGK---TMEARENAAATIFSLSM----IDDCKVMIGGRPRAIPALVGLLRE----GTTAGKKDAATALFN 546 (686)
Q Consensus 478 ~l~~Lv~lL~~~~---~~e~~~~aa~~L~~Ls~----~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~Al~aL~n 546 (686)
.++.+..++.++. ...++..|.-++++|.. ..+.+..... ...++.|.+.|.. ++..-+..++.||+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 4555666666431 34556666666666542 2222111111 3466777766643 344556778899988
Q ss_pred hcCCCCcHHHHHHcCcHHHHHHHhc-C--CCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhc--CChHHH
Q 046850 547 LAVYNANKASVVVAGAVPLLIELLM-D--DKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRF--GSAKGK 620 (686)
Q Consensus 547 Ls~~~~~~~~iv~~G~v~~Ll~lL~-~--~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~k 620 (686)
+-... .++.+...+. + .+..++..|+.+|..++. .+. .. -+.+..++.+ .++++|
T Consensus 473 ~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v-~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 473 AGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KV-QEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred cCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HH-HHHHHHHHcCCCCChHHH
Confidence 85533 3455555554 2 356788899999998874 222 11 4556666655 455677
Q ss_pred HHHHHHH
Q 046850 621 ENSITLL 627 (686)
Q Consensus 621 e~A~~~L 627 (686)
-.|+.+|
T Consensus 534 iaA~~~l 540 (574)
T smart00638 534 MAAVLVL 540 (574)
T ss_pred HHHHHHH
Confidence 7666654
No 410
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.61 E-value=5.9e+02 Score=29.72 Aligned_cols=261 Identities=16% Similarity=0.114 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhh-------ccccccccHHHHHhcCc
Q 046850 406 GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALL-------NLSIFDNNKILIMAAGA 478 (686)
Q Consensus 406 ~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~-------nLs~~~~~k~~i~~~g~ 478 (686)
..+-.|.-|...|..+..+.. .--.-..-++-..++++|..+.|+.....+.+|. ++-+-+.+|....--+.
T Consensus 51 s~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~ 129 (1082)
T KOG1410|consen 51 SYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDP 129 (1082)
T ss_pred CCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhh
Confidence 345667777777766654332 1111111223356777787766554444444333 33344555666666678
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-hHHHHHHHHHHHHhcCCCCcHHHH
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-TAGKKDAATALFNLAVYNANKASV 557 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~~~~~i 557 (686)
+..+.+.|+.+ +.|.-..+..+|..|...- |...-+....--.....-+++.+ -++..-|+..|.....- |-..=
T Consensus 130 v~~~~kfl~~~-~ve~~~igv~iLsqLvqem-N~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~--nlnd~ 205 (1082)
T KOG1410|consen 130 VDDVTKFLQMD-NVEHCIIGVQILSQLVQEM-NQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDL--NLNDR 205 (1082)
T ss_pred HHHHHHHhccC-chHHHHHHHHHHHHHHHHh-hCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhccc--CcccH
Confidence 89999999988 7887888888877764321 10000000000001111122222 14445555555554411 11111
Q ss_pred HHcCcHHHHHHH----hc-CCCchhHHHHHHHHHHHhCChhc-HHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 558 VVAGAVPLLIEL----LM-DDKAGITDDALAVLALLLGCREG-LEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 558 v~~G~v~~Ll~l----L~-~~~~~v~~~al~~L~nLa~~~~~-~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
.+.|.+..++++ |. +--....++...=+.+. ..|.. |..+.+... +....++..+-.+...+.|+.+|..++
T Consensus 206 ~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctV-QIPTsWRs~f~d~st-lqlfFdly~slp~~~S~~alsclvqlA 283 (1082)
T KOG1410|consen 206 AQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTV-QIPTSWRSSFLDSST-LQLFFDLYHSLPPELSELALSCLVQLA 283 (1082)
T ss_pred hHhhHHHHHHHHHhhhccccccccccccccccccce-ecCcHHHHHhcCchH-HHHHHHHhccCCchhhHHHHHHHHHHH
Confidence 223333333332 21 00000000000111111 12333 344445445 777788888878888999999999988
Q ss_pred ccC-----hHHHHHHHHcCCCChHHHHHHHhcC----CHHHHHHHHHHHHHHHh
Q 046850 632 KDG-----GEEVARRLLINPRSIPSLQSLTTDG----SLKARRKADALLRLLNR 676 (686)
Q Consensus 632 ~~~-----~~~~~~~l~~~~g~i~~L~~Ll~~~----~~~~k~~A~~lL~~l~~ 676 (686)
+-. +.+...-+. .++.-..+++.++ ++..-..-+.+|..++-
T Consensus 284 SvRRsLFN~aeRa~yl~---~Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlkt 334 (1082)
T KOG1410|consen 284 SVRRSLFNGAERAKYLQ---HLVEGVKRILENPQGLSDPANYHEFCRLLARLKT 334 (1082)
T ss_pred HHHHHHhCCHHHHHHHH---HHHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHh
Confidence 621 122222221 1345555666665 44444555555555543
No 411
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=43.45 E-value=5.5e+02 Score=32.32 Aligned_cols=245 Identities=20% Similarity=0.153 Sum_probs=118.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.|+..+-+..+++|..++-.|+.+.+.+...-.. ..+...+...|..++.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~------------------~~led~~~rll~v~~Ld------- 131 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSY------------------ELLEDLLIRLLCVLALD------- 131 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhH------------------HHHHHHHHHHHHHHHHH-------
Confidence 46778888888999999999999998887644321111 00222222333333221
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHH-HhcCCCC
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALF-NLAVYNA 552 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~-nLs~~~~ 552 (686)
.+=+.........+++.++++|..+..+-... .+ ...+..+..++.....+++.-.+..+. +++...+
T Consensus 132 -------rf~dfisd~vvapVre~caq~L~~~l~~~~~s-~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d 200 (1549)
T KOG0392|consen 132 -------RFGDFISDNVVAPVREACAQALGAYLKHMDES-LI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQD 200 (1549)
T ss_pred -------HhcccccccchhhhHHHHHHHHHHHHHhhhhH-hh---HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHH
Confidence 11111111113456666777766665442211 11 123455555555443333222222221 1111000
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCCh-h-cHHHHHhCCCChHHHHHHHhcC--ChHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCR-E-GLEEIRKCRVLVPLLIDLLRFG--SAKGKENSITLLL 628 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~-~-~~~~i~~~~~~i~~Lv~lL~~~--s~~~ke~A~~~L~ 628 (686)
.-. ..-.-+++....-|.+.+..++..|+..|.-.+..- . ..+.|.. ++..++.++... -..........|.
T Consensus 201 ~l~-~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~---lv~~l~~~l~~lddl~~s~~si~~ll~ 276 (1549)
T KOG0392|consen 201 LLF-QLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAK---LVHTLWSFLLELDDLSSSTASIMHLLD 276 (1549)
T ss_pred HHH-HHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHH---HHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 000 001123445555566777788888877777665422 1 1111111 122222222211 1223344455566
Q ss_pred HhhccChH-HHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 629 GLCKDGGE-EVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 629 ~L~~~~~~-~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
.+|..... +.-...-...|++|.++.++.+.=..++..+...+..+.+..
T Consensus 277 ~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 277 ELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67766311 111111122578999999998887778888877777776654
No 412
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=43.02 E-value=1e+02 Score=29.74 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=55.0
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSI 465 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~ 465 (686)
+..++.+++..-+.+..++..|+..+....+..--|-.. .+|.|+.+..++++.++..|...+..+..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~-----cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ-----CVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH-----HHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 456777788777899999999999998887754433332 57999999999999999999999988853
No 413
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=42.60 E-value=4.2 Score=42.46 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=21.0
Q ss_pred CcccccCcccCcCceEccC---cc--cccHHhHHHHHhhCCCCCCCCCcc
Q 046850 283 EFRCPISLDLMRDPVIVAS---GH--TYDRNSIAQWINSGHHTCPKSGQR 327 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~c---gh--t~cr~ci~~w~~~~~~~CP~c~~~ 327 (686)
.-.||+|+..-.--++..- |+ -+|..|=..|--. ...||.|+..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 3599999987555555433 54 4688998999554 6789999865
No 414
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=16 Score=42.05 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=38.0
Q ss_pred CCCCCCCcccccCcccCcCce----------EccCcccc--------------------cHHhHHHHHhh-------CCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPV----------IVASGHTY--------------------DRNSIAQWINS-------GHH 319 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv----------~~~cght~--------------------cr~ci~~w~~~-------~~~ 319 (686)
.+-+|+--+|+-|++-|.||- .+.||..| |..|-.++-+- ...
T Consensus 95 ~~I~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~ 174 (750)
T COG0068 95 TQIPPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPI 174 (750)
T ss_pred cccCCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccc
Confidence 445788889999999888763 23677765 88888776552 345
Q ss_pred CCCCCCccc
Q 046850 320 TCPKSGQRL 328 (686)
Q Consensus 320 ~CP~c~~~l 328 (686)
.||.|+-.+
T Consensus 175 aCp~CGP~~ 183 (750)
T COG0068 175 ACPKCGPHL 183 (750)
T ss_pred cCcccCCCe
Confidence 799998764
No 415
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.52 E-value=13 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=11.9
Q ss_pred cccHHhHHHHHhh
Q 046850 304 TYDRNSIAQWINS 316 (686)
Q Consensus 304 t~cr~ci~~w~~~ 316 (686)
.|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 416
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=41.49 E-value=19 Score=43.70 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=35.7
Q ss_pred CcccccCcccC-----cCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLM-----RDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m-----~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34899999753 245443 677779999997767789999999987654
No 417
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=40.96 E-value=26 Score=30.56 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=20.7
Q ss_pred cccccHHhHHHHHhh--------CCCCCCCCCcc
Q 046850 302 GHTYDRNSIAQWINS--------GHHTCPKSGQR 327 (686)
Q Consensus 302 ght~cr~ci~~w~~~--------~~~~CP~c~~~ 327 (686)
.-.||..|+..++.+ ++..||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 567999999888874 45789999753
No 418
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=40.74 E-value=1.1e+02 Score=31.58 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=65.3
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh--HhhcCCCcHHHHHHh----cc--------cCChHHHHHHHH
Q 046850 477 GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV--MIGGRPRAIPALVGL----LR--------EGTTAGKKDAAT 542 (686)
Q Consensus 477 g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~--~i~~~~g~i~~Lv~l----L~--------~~~~~~~~~Al~ 542 (686)
=++|+++.++++. +.+.|..++.+|..+...-.... .+.. .|..+.+-+. |. ..+..+...|..
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~-tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRR-TGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHH-cChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 3689999999998 99999999999999976543332 2333 5655544443 33 234567777777
Q ss_pred HHHHhcCC---C--C----cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 046850 543 ALFNLAVY---N--A----NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLL 589 (686)
Q Consensus 543 aL~nLs~~---~--~----~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa 589 (686)
+|..|+.. + . ...+++..|++..+...-...+..++...+..+..+.
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 77777431 1 1 2344445555444433222223555555555444443
No 419
>PRK12495 hypothetical protein; Provisional
Probab=40.39 E-value=35 Score=33.56 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhHHhHHHHHhhh
Q 046850 207 EEISKLEAEAQKQAGTGGLIVVSNINNLISLVSFS 241 (686)
Q Consensus 207 ~E~~~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 241 (686)
.|.+.|++.. ..+ +.+..-.+.|-.||.++
T Consensus 8 aEREkLREKy---e~d--~~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 8 AEREKLREKY---EQD--EQKREATERMSELLLQG 37 (226)
T ss_pred HHHHHHHHHH---hhh--HHHHHHHHHHHHHHHhh
Confidence 4565555543 323 22333566777777544
No 420
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=40.04 E-value=2.5e+02 Score=32.65 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=110.0
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
.+.++..-.++.|+..+.-+ + +-......++-+...-+... .. .+++|.|+.|+...+..++..-+ .++-.
T Consensus 286 pe~i~~~kvlp~Ll~~~~~g-~--a~~~~ltpl~k~~k~ld~~e--yq-~~i~p~l~kLF~~~Dr~iR~~LL---~~i~~ 356 (690)
T KOG1243|consen 286 PEEIIASKVLPILLAALEFG-D--AASDFLTPLFKLGKDLDEEE--YQ-VRIIPVLLKLFKSPDRQIRLLLL---QYIEK 356 (690)
T ss_pred hHHHHHHHHHHHHHHHhhcc-c--cchhhhhHHHHhhhhccccc--cc-cchhhhHHHHhcCcchHHHHHHH---HhHHH
Confidence 34444555666666666665 2 22222223333322211111 34 67999999999998877765443 33333
Q ss_pred CCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 550 YNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 550 ~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
+-+ --..++...++|.+..-+.+.++.+++..+..+..|+..=..+ .++... +..+.++-......++.+..-+|.
T Consensus 357 ~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~El-lr~~ar~q~d~~~~irtntticlg 433 (690)
T KOG1243|consen 357 YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGEL-LRYLARLQPDEHGGIRTNTTICLG 433 (690)
T ss_pred HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHH-HHHHHhhCccccCcccccceeeec
Confidence 332 4456778889999999999999999999999999998622211 111111 233333222244567777777777
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
.+..+..+..+. .-.+-.+.+-+++.-..+|..+.+.+..-.++
T Consensus 434 ki~~~l~~~~R~-----~vL~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 434 KIAPHLAASVRK-----RVLASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred ccccccchhhhc-----cccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 777664333322 22344455545555555666666666655443
No 421
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.82 E-value=87 Score=36.20 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=77.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHh------cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMA------AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDC 511 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~------~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~ 511 (686)
...++++|.++.-.++...+.++.|+..+-....++++ +..+..+++-|.+. ++-+|..|...+..++.-+.
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~s- 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNS- 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcc-
Confidence 35677899999888888888888888765444445554 23455566666666 78888888888777765431
Q ss_pred hhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 512 KVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 512 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
...+....++...+..+.+.+.-++++|...+..|-..++
T Consensus 379 -k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 379 -KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred -cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 1111113355666777788888899999999998876655
No 422
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.44 E-value=3.8e+02 Score=31.18 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=81.2
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-hHHHHHHHHHHHHhcCCCCcHHH
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-TAGKKDAATALFNLAVYNANKAS 556 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~~~~~ 556 (686)
.++.+++-|-.+.+...|..|-.+|..++..++ ++....-+|..|+ +-....|..+|..+.....-..-
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~spe----------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl 75 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSESPE----------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPL 75 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHH----------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcH
Confidence 356677777776688999999999999988854 3333333444443 56666777777777665431111
Q ss_pred HHHcCcHHHHHHHhcCCCchhHHHH----HHHHHHHhC---ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 046850 557 VVVAGAVPLLIELLMDDKAGITDDA----LAVLALLLG---CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLG 629 (686)
Q Consensus 557 iv~~G~v~~Ll~lL~~~~~~v~~~a----l~~L~nLa~---~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~ 629 (686)
..+-.+-..++..|..+.+.+..-. +..++.|.. .+..+....=.+. +..+.++++.++.+-.--++.+|..
T Consensus 76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~-v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDP-VDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhh-HHHHHHHhccCchHHHHHHHHHHHH
Confidence 1112233446666655433333322 333333332 2222333222344 6777777777666666666777766
Q ss_pred hhc
Q 046850 630 LCK 632 (686)
Q Consensus 630 L~~ 632 (686)
|..
T Consensus 155 Lvq 157 (1082)
T KOG1410|consen 155 LVQ 157 (1082)
T ss_pred HHH
Confidence 653
No 423
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=39.29 E-value=1.7e+02 Score=31.32 Aligned_cols=101 Identities=20% Similarity=0.184 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC-------ChHHHHHHHHHHHHhcCCC
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG-------TTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~Al~aL~nLs~~~ 551 (686)
+..+...+.+. +...+..| |.+|..++.. ...+|.++..+.++ +.......+.++..|..++
T Consensus 180 f~~It~a~~~~-~~~~r~~a---L~sL~tD~gl-------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 180 FEEITEALVGS-NEEKRREA---LQSLRTDPGL-------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHhCC-CHHHHHHH---HHHhccCCCc-------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 33444444444 55555554 4444443211 33556666665432 4566677778888888888
Q ss_pred CcHHHHHHcCcHHHHHHHhcC----------CCchhHHHHHHHHHHHhC
Q 046850 552 ANKASVVVAGAVPLLIELLMD----------DKAGITDDALAVLALLLG 590 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~----------~~~~v~~~al~~L~nLa~ 590 (686)
.-.-...=+-.+|+++.++-. .+-.+++.|+.+|..+|.
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 754444445588999988721 234789999999999985
No 424
>PRK04023 DNA polymerase II large subunit; Validated
Probab=38.57 E-value=26 Score=41.99 Aligned_cols=68 Identities=13% Similarity=0.046 Sum_probs=40.3
Q ss_pred CCCcccccCcccCcCceEccCcc-----cccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCC
Q 046850 281 PDEFRCPISLDLMRDPVIVASGH-----TYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNV 352 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cgh-----t~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 352 (686)
.....||-|+........-.||. .||..| .+.. +...||.|+....... .....++.+..+-.+.-++
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~-~~y~CPKCG~El~~~s-~~~i~l~~~~~~A~~~lg~ 696 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEV-EEDECEKCGREPTPYS-KRKIDLKELYDRALENLGE 696 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcC-CCCcCCCCCCCCCccc-eEEecHHHHHHHHHHHhCC
Confidence 35678999988763332335884 489998 3322 3578999998875332 2233455555554444443
No 425
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.84 E-value=93 Score=36.97 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHhhcccccc-ccHHHHH-hcCc---HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHH
Q 046850 449 DPRIQENAVTALLNLSIFD-NNKILIM-AAGA---IDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIP 523 (686)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~-~~k~~i~-~~g~---l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~ 523 (686)
|++++..|+.++.|+...+ .++..++ .-|- -+. ..+..+...+..++..+-.++- ++...+|.
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r--~~l~~~~ks~~le~~l~~mw~~----------Vr~ndGIk 742 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR--IFLGAGTKSAKLEQVLRQMWEA----------VRGNDGIK 742 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc--ccccCCCchHHHHHHHHHHHHH----------HhcCccHH
Confidence 8899999999999998776 4443332 2111 111 1222232223333333333332 22267899
Q ss_pred HHHHhcccCCh-----HHHHHHHHHHHHhcCCCCcHHHHHHcCc
Q 046850 524 ALVGLLREGTT-----AGKKDAATALFNLAVYNANKASVVVAGA 562 (686)
Q Consensus 524 ~Lv~lL~~~~~-----~~~~~Al~aL~nLs~~~~~~~~iv~~G~ 562 (686)
.|++||+...| .+++.|+.+|..|+.++..++.+.+-.+
T Consensus 743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 743 ILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCcc
Confidence 99999986543 7889999999999999988887765443
No 426
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=36.78 E-value=3.6e+02 Score=32.13 Aligned_cols=88 Identities=20% Similarity=0.153 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhcccccccc--HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHh
Q 046850 451 RIQENAVTALLNLSIFDNN--KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGL 528 (686)
Q Consensus 451 ~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 528 (686)
.+......+|..++.-+.. +..+.+.++...++.++=++ +.++...|..+|...+.. .|-...+-++
T Consensus 496 ~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp-~~~l~qaA~~llk~~~d~----------~~R~e~i~~l 564 (727)
T PF12726_consen 496 QITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSP-DDDLYQAAQDLLKQAFDV----------DGRLEAIQAL 564 (727)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCC-ChHHHHHHHHHHHHHhcC----------CcHHHHHHHH
Confidence 3555667778888876555 44444568899999999888 888888888888776643 3334444445
Q ss_pred cccCChHHHHHHHHHHHHhcC
Q 046850 529 LREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 529 L~~~~~~~~~~Al~aL~nLs~ 549 (686)
|++.-........++|..+..
T Consensus 565 l~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 565 LQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHHhHHHHHHHHHHHHHHHHh
Confidence 554433344444444444443
No 427
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=36.17 E-value=2.2e+02 Score=32.04 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=53.1
Q ss_pred HHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccC------------hHHHHHHHHcCCCChHHHHHHHh--cCCHH
Q 046850 598 IRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDG------------GEEVARRLLINPRSIPSLQSLTT--DGSLK 662 (686)
Q Consensus 598 i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~------------~~~~~~~l~~~~g~i~~L~~Ll~--~~~~~ 662 (686)
+.+.+. ++.|+.+|.. .++..+.+|..+|..+.+.+ +......+.. ...+..|+..+- .++..
T Consensus 58 L~~q~L-I~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~s~ 135 (475)
T PF04499_consen 58 LAEQNL-IPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGGSS 135 (475)
T ss_pred HHHhCH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCcch
Confidence 344555 9999999974 67788999998887775432 1344555555 556777777665 44555
Q ss_pred HHHHHHHHHHHHHhc
Q 046850 663 ARRKADALLRLLNRC 677 (686)
Q Consensus 663 ~k~~A~~lL~~l~~~ 677 (686)
.--...-++.++|+.
T Consensus 136 lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 136 LVNGVSILIELIRKN 150 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 566666788888775
No 428
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=36.13 E-value=9.9 Score=39.76 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=30.7
Q ss_pred CcccccCcccCcCceEc----cCcc--cccHHhHHHHHhhCCCCCCCCCcc
Q 046850 283 EFRCPISLDLMRDPVIV----ASGH--TYDRNSIAQWINSGHHTCPKSGQR 327 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~----~cgh--t~cr~ci~~w~~~~~~~CP~c~~~ 327 (686)
.-.||+|+..-.--++. .-|+ -+|..|=..|--. ...||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 45999999865433332 2343 4688898899655 7889999864
No 429
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=30 Score=38.57 Aligned_cols=37 Identities=11% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCCCcccccCcccCcC-ceEccCcccccHHhHHHHHhh
Q 046850 280 IPDEFRCPISLDLMRD-PVIVASGHTYDRNSIAQWINS 316 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~d-Pv~~~cght~cr~ci~~w~~~ 316 (686)
......|.||.+-... .+.+.|||.||..|+..++..
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 3556899999987775 555699999999999998885
No 430
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=35.73 E-value=1.5e+02 Score=32.07 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=49.5
Q ss_pred HHHHHHhcccCC-hHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC-CchhHHH-HHHHHHHHhC
Q 046850 522 IPALVGLLREGT-TAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDD-KAGITDD-ALAVLALLLG 590 (686)
Q Consensus 522 i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~-~~~v~~~-al~~L~nLa~ 590 (686)
+..+++-+..+. ..++..++--|+.-+.++..+..+..+|.+..+++.+.+. +..+... ++.++..++.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~ 94 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR 94 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc
Confidence 556666666433 4888899999999999999999999999999999999543 3323333 3444444444
No 431
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=35.68 E-value=25 Score=42.52 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=35.9
Q ss_pred CcccccCcccC-----cCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLM-----RDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m-----~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34899999753 345543 677779999997667779999999987754
No 432
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=35.66 E-value=26 Score=42.78 Aligned_cols=43 Identities=26% Similarity=0.600 Sum_probs=30.2
Q ss_pred CCCCCCCcccccCc--ccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 277 LPNIPDEFRCPISL--DLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 277 ~~~~~~~~~Cpic~--~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
--++|..+.||-|+ +.+.|+ .-|..|.. ....||+|+.++...
T Consensus 908 VNPL~PHY~Cp~Cky~Ef~~d~---svgsGfDL---------pdK~CPkCg~pl~kD 952 (1444)
T COG2176 908 VNPLPPHYLCPECKYSEFIDDG---SVGSGFDL---------PDKDCPKCGTPLKKD 952 (1444)
T ss_pred cCCCCccccCCCCceeeeecCC---CcCCCCCC---------CCCCCCcCCCccccC
Confidence 34678999999997 566776 33333432 478999999997644
No 433
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=35.58 E-value=53 Score=34.74 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhccCCchhHHHh
Q 046850 82 SVIRRVKLLIQGCKDGSSLWGLM 104 (686)
Q Consensus 82 ~~l~~ak~Ll~~c~~~Sklyll~ 104 (686)
..|.+||+|-++|+.+.+|||=-
T Consensus 123 spL~~AkRLte~~q~ga~IylKr 145 (477)
T KOG1395|consen 123 SPLIRAKRLTEHCQTGARIYLKR 145 (477)
T ss_pred chhHHHHHHHHHhCCCCEEEEEe
Confidence 35789999999999999999843
No 434
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.97 E-value=1.8e+02 Score=25.33 Aligned_cols=69 Identities=22% Similarity=0.161 Sum_probs=49.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHH---hcC---CHHHHHHHHHHHHHH
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLT---TDG---SLKARRKADALLRLL 674 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~~~---~~~~k~~A~~lL~~l 674 (686)
+..|.+-|.+.++..+-.|+.+|-.++.++++.....+.. ...+.-++.+. ..| +..+|+++..+++..
T Consensus 39 ~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~-~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS-NDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH-hHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4556666667889999999999999999998888887766 43343443321 122 567899988887764
No 435
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.51 E-value=53 Score=25.36 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=10.7
Q ss_pred CCCCCCCCCccccCC
Q 046850 317 GHHTCPKSGQRLIHM 331 (686)
Q Consensus 317 ~~~~CP~c~~~l~~~ 331 (686)
.|.+||.|+++++.+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 367888888877643
No 436
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.19 E-value=6.3e+02 Score=27.33 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhccCchhhhHhhcC-CCcHHHHHHhc-c--cCChHHHHHHHHHHHHhcCCCC-------------cH
Q 046850 492 MEARENAAATIFSLSMIDDCKVMIGGR-PRAIPALVGLL-R--EGTTAGKKDAATALFNLAVYNA-------------NK 554 (686)
Q Consensus 492 ~e~~~~aa~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~lL-~--~~~~~~~~~Al~aL~nLs~~~~-------------~~ 554 (686)
..-|..|+..|..|+..-+ ..+... .+.+..++.-. . +.+.+-+..|+..+..|+.... +.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~--~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFE--KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred CCcHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 3457778888888875422 111110 11233332211 1 2345777789999999987553 22
Q ss_pred HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHH
Q 046850 555 ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLL 627 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L 627 (686)
..+....++|-|. -=.+..+-++..|+..+...... -.++.+.+ . +|.++..|.+.+..+..+|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~~~l~~--~-~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPKEQLLQ--I-FPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-HHHHHH--H-HHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCHHHHHH--H-HHHHHHHhCCCCcchhhhhhhhC
Confidence 3334444444443 10123556677777777777542 22333333 4 89999999988888888887764
No 437
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=34.01 E-value=62 Score=28.91 Aligned_cols=92 Identities=29% Similarity=0.273 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHH---hcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHH
Q 046850 579 DDALAVLALLLGCREGLEEIRKCRVLVPLLIDLL---RFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSL 655 (686)
Q Consensus 579 ~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL---~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 655 (686)
...+.-++..+-+......| +..|.+-| +..+....-.|+.+|-.|+.++++.++..+......+..|..+
T Consensus 21 ~~~l~eIa~~t~~~~~~~~I------~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f 94 (125)
T PF01417_consen 21 GKLLAEIAQLTYNSKDCQEI------MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDF 94 (125)
T ss_dssp HHHHHHHHHHTTSCHHHHHH------HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG-
T ss_pred HHHHHHHHHHHhccccHHHH------HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhccee
Confidence 33444455555443333332 45566655 3356678889999999999999988888887633445555444
Q ss_pred Hh---cCCH---HHHHHHHHHHHHHHh
Q 046850 656 TT---DGSL---KARRKADALLRLLNR 676 (686)
Q Consensus 656 l~---~~~~---~~k~~A~~lL~~l~~ 676 (686)
-. .|.. .+|++|..++.++.+
T Consensus 95 ~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 95 QYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp --BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred eccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 22 1322 489999999999865
No 438
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=33.89 E-value=2.9e+02 Score=32.90 Aligned_cols=125 Identities=18% Similarity=0.036 Sum_probs=81.1
Q ss_pred CCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHH
Q 046850 519 PRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEE 597 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~ 597 (686)
......+...+.++++...+..+.++.+++.-.....+- ...-.++-..-....-..+......+|..++. .++....
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 345677778888888899999999999988644311110 11111222222222223556667888888886 5566666
Q ss_pred HHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccCh-HHHHHHHHc
Q 046850 598 IRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGG-EEVARRLLI 644 (686)
Q Consensus 598 i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~~ 644 (686)
+.........++.++-++..++.+.|..+|.......+ .++.+.+.+
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 66654437888888888999999999999998876433 355555555
No 439
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=33.57 E-value=20 Score=33.30 Aligned_cols=21 Identities=19% Similarity=0.637 Sum_probs=17.7
Q ss_pred CCcccccCcccCcCceEccCc
Q 046850 282 DEFRCPISLDLMRDPVIVASG 302 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cg 302 (686)
++.+||||++.-.+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467999999999999988553
No 440
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=33.45 E-value=7.2e+02 Score=27.76 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=44.3
Q ss_pred hhcCC-CHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcH
Q 046850 444 LLSSH-DPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAI 522 (686)
Q Consensus 444 lL~s~-~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i 522 (686)
++..+ ..+++..|...|..+......+..+...-.+..+ .....++.-..-..+|..|+.+...-.. .. .+..
T Consensus 36 Li~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I----~~~~~~~d~~~~l~aL~~LT~~Grdi~~-~~-~~i~ 109 (464)
T PF11864_consen 36 LIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI----SDPSNDDDFDLRLEALIALTDNGRDIDF-FE-YEIG 109 (464)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHcCCcCchh-cc-cchH
Confidence 44433 5678888888888887665543333333223333 3322344444555666666655432222 33 6677
Q ss_pred HHHHHhcc
Q 046850 523 PALVGLLR 530 (686)
Q Consensus 523 ~~Lv~lL~ 530 (686)
|.|...+.
T Consensus 110 ~~L~~wl~ 117 (464)
T PF11864_consen 110 PFLLSWLE 117 (464)
T ss_pred HHHHHHHH
Confidence 77777664
No 441
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.28 E-value=30 Score=23.13 Aligned_cols=10 Identities=30% Similarity=0.704 Sum_probs=7.3
Q ss_pred CCCCCCCCcc
Q 046850 318 HHTCPKSGQR 327 (686)
Q Consensus 318 ~~~CP~c~~~ 327 (686)
...||.|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5688888753
No 442
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=33.21 E-value=22 Score=22.48 Aligned_cols=9 Identities=22% Similarity=0.386 Sum_probs=4.4
Q ss_pred ccccCcccC
Q 046850 285 RCPISLDLM 293 (686)
Q Consensus 285 ~Cpic~~~m 293 (686)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 355555443
No 443
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.14 E-value=20 Score=26.63 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=12.4
Q ss_pred CCCCCCCcccccCcc
Q 046850 277 LPNIPDEFRCPISLD 291 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~ 291 (686)
..++|+++.||+|..
T Consensus 28 f~~Lp~~w~CP~C~a 42 (50)
T cd00730 28 FEDLPDDWVCPVCGA 42 (50)
T ss_pred HhHCCCCCCCCCCCC
Confidence 346899999999974
No 444
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=25 Score=35.71 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=33.7
Q ss_pred CCCCCcccccCcccCcCceEccC----cccccHHhHHHHHhh----CCCCCCC
Q 046850 279 NIPDEFRCPISLDLMRDPVIVAS----GHTYDRNSIAQWINS----GHHTCPK 323 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~c----ght~cr~ci~~w~~~----~~~~CP~ 323 (686)
....-++|.+|.+-+.|.-.+-| .|-||--|-.+.++. |...||-
T Consensus 264 A~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 264 APSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 33456999999999999887755 688998777666664 4556764
No 445
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=32.39 E-value=4.2e+02 Score=31.30 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=49.8
Q ss_pred CCcHHHHHHhccc--------CChHHHHHHHHHHHHhcC--C-CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHH
Q 046850 519 PRAIPALVGLLRE--------GTTAGKKDAATALFNLAV--Y-NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLAL 587 (686)
Q Consensus 519 ~g~i~~Lv~lL~~--------~~~~~~~~Al~aL~nLs~--~-~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~n 587 (686)
.|.++.+++.|.. ++++-.+-|+..+.++.. . +.-..-+.+.=+++.++..+.++..-++..||..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 6789999999832 234556667777777665 2 2223333444466777778888888999999999998
Q ss_pred HhC
Q 046850 588 LLG 590 (686)
Q Consensus 588 La~ 590 (686)
+..
T Consensus 487 ~ee 489 (970)
T COG5656 487 IEE 489 (970)
T ss_pred HHH
Confidence 853
No 446
>PF15616 TerY-C: TerY-C metal binding domain
Probab=32.29 E-value=19 Score=32.63 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.+...-.||-|....--.+- .||+.+|-. ..+..+||-|++...
T Consensus 73 eL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 73 ELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGS 116 (131)
T ss_pred HhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeee
Confidence 34444689999988755544 899999843 245789999988753
No 447
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=31.92 E-value=6.9e+02 Score=27.06 Aligned_cols=155 Identities=16% Similarity=0.109 Sum_probs=81.7
Q ss_pred HhccCchhhhHhhcCCCcHHHHHHhcccCC-hHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc------CCCch
Q 046850 504 SLSMIDDCKVMIGGRPRAIPALVGLLREGT-TAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLM------DDKAG 576 (686)
Q Consensus 504 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~------~~~~~ 576 (686)
||+..++-.+.+ + ..-.+.+-.-+...+ ...+..|+..|..|+..-+ .-+..-+...+-.+|. ..+..
T Consensus 196 nl~~~e~D~Elf-E-ddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~---~~v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 196 NLCLREEDEELF-E-DDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE---KQVTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HHS--HHHHHHH-H-HSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred ccCCCHHHHHHH-c-cCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhCCcccHH
Confidence 555544333332 2 233344433333222 3567789999999985422 2111111122223332 23556
Q ss_pred hHHHHHHHHHHHhCChhcH-------------HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHH
Q 046850 577 ITDDALAVLALLLGCREGL-------------EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLL 643 (686)
Q Consensus 577 v~~~al~~L~nLa~~~~~~-------------~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 643 (686)
-++.|+..+..|+...... ..+..... +|-|. --.+..|-.+-.|+..+..+-..-+.+ .+.
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v-~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~---~l~ 345 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHV-LPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE---QLL 345 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHT-CHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH---HHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHh-HHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH---HHH
Confidence 7888999999998633211 11222222 33333 001256678888999988887765443 222
Q ss_pred cCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 046850 644 INPRSIPSLQSLTTDGSLKARRKADALL 671 (686)
Q Consensus 644 ~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 671 (686)
+++|.++..+.+++.-+...|+.++
T Consensus 346 ---~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 ---QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp ---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2599999999999999988887653
No 448
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=31.40 E-value=9 Score=43.44 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=87.8
Q ss_pred HHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHH
Q 046850 500 ATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITD 579 (686)
Q Consensus 500 ~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~ 579 (686)
.+..+||...+|+..+....-....||-.-+-.=..+...|+.++.||+.-. -..+-....+..+-+-+.+.+..+..
T Consensus 15 tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nlaqpt--~~e~S~~~~L~t~t~Gi~S~drflim 92 (847)
T KOG2312|consen 15 TVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLAQPT--SGESSLIKQLLTPTRGISSPDRFLIM 92 (847)
T ss_pred eeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccCCcc--hhhhhHHHHHhhhccCCCCCCceeEe
Confidence 3456788888898888774455555554433333467788999999998722 12221112223333334566778888
Q ss_pred HHHHHHHHHhCChhcHHH---HHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHH
Q 046850 580 DALAVLALLLGCREGLEE---IRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLT 656 (686)
Q Consensus 580 ~al~~L~nLa~~~~~~~~---i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 656 (686)
.++.+|.+||..+.+-+. .+.... ...++..+.-.+-...-.-..+|+.|...++-.+ ..+.+..+++..|+.+.
T Consensus 93 r~lEIl~~lcgrEgN~qvIc~~l~~d~-y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac-~~Is~v~klidqLVsl~ 170 (847)
T KOG2312|consen 93 RALEILPPLCGREGNPQVICQVLSNDA-YGFIVQGLTLADVLLVIQTLEQLYALSEMGDVAC-VPISNVQKLIDQLVSLS 170 (847)
T ss_pred eccccCcccccCCCCceeehhhhchHH-HHHHHhccchhHeehhhhhhhHHhcccccCCccc-hhhhhhhhhhhhhhccc
Confidence 899999999975544333 233333 4444444432233334455566667766654333 33333255677777655
No 449
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=30.83 E-value=3e+02 Score=25.09 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=20.2
Q ss_pred HHHHHHHhhcCCCCHHHH---HHHHHHHHHHHHHh
Q 046850 188 GRLKEILSSIGLTSPLDY---EEEISKLEAEAQKQ 219 (686)
Q Consensus 188 ~~l~~~~~~l~~~~~~~~---~~E~~~l~~~~~~~ 219 (686)
+.+..++.+|||+|..++ ...+..|..+++..
T Consensus 94 ~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 94 ERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999975533 44455555555443
No 450
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=30.65 E-value=3.1e+02 Score=25.66 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=56.1
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHH-HhCCCChHHHHH-HHhcC--ChHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEI-RKCRVLVPLLID-LLRFG--SAKGKENSITLLL 628 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i-~~~~~~i~~Lv~-lL~~~--s~~~ke~A~~~L~ 628 (686)
.-..+++..+.+.+++.+.+.+..+...+++++..+...- +..+ .+.+.+++.+.. ++.+. +..-|+.++.++.
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~--~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~ 142 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF--RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILR 142 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 3445667788888888887777899999999999997421 2221 233444666666 66653 3468889999999
Q ss_pred Hhhcc
Q 046850 629 GLCKD 633 (686)
Q Consensus 629 ~L~~~ 633 (686)
.+|..
T Consensus 143 ~l~~~ 147 (168)
T PF12783_consen 143 ELCKD 147 (168)
T ss_pred HHHhC
Confidence 99986
No 451
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=23 Score=36.36 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=27.2
Q ss_pred cccccCcccCc-CceEccCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 284 FRCPISLDLMR-DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 284 ~~Cpic~~~m~-dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
-.|--|.-... ---.++|.|.||..|-. ....+.||.|...+
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr---~~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECAR---SDSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhh---cCccccCcCcccHH
Confidence 45677754322 22246999999999943 22357899996553
No 452
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=30.58 E-value=27 Score=32.40 Aligned_cols=38 Identities=24% Similarity=0.472 Sum_probs=22.0
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHH-hhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWI-NSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~-~~~~~~CP~c~~~l~~ 330 (686)
...|.||-|...+. -.=..... ..|.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEE
Confidence 55889997664443 11111111 1246899999998753
No 453
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=30.54 E-value=21 Score=26.14 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=9.6
Q ss_pred CCCCCCCcccccCcc
Q 046850 277 LPNIPDEFRCPISLD 291 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~ 291 (686)
..++|+++.||+|..
T Consensus 28 F~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 28 FEDLPDDWVCPVCGA 42 (47)
T ss_dssp GGGS-TT-B-TTTSS
T ss_pred HHHCCCCCcCcCCCC
Confidence 447899999999974
No 454
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.44 E-value=7.2e+02 Score=29.26 Aligned_cols=143 Identities=16% Similarity=0.115 Sum_probs=85.1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCc------hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHH
Q 046850 482 IIEVLQSGKTMEARENAAATIFSLSMID------DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKA 555 (686)
Q Consensus 482 Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~ 555 (686)
|-.-|+-. +.++|.+|+..++++-... +....+.+ .-...|.++|.++-+.++..|..-++...+. -.
T Consensus 179 l~R~L~a~-Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~--kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fW 252 (1005)
T KOG1949|consen 179 LWRGLKAR-NSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ--KQFEELYSLLEDPYPMVRSTAILGVCKITSK---FW 252 (1005)
T ss_pred HHHhhccC-chhhhhhHHHHHHHhccCCCCCccHHHHHHHHH--HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HH
Confidence 44455666 8899999999999986422 22333433 3467888999998888888777666554321 11
Q ss_pred HHHHcCcHHHHHHHhc-----CCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 556 SVVVAGAVPLLIELLM-----DDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 556 ~iv~~G~v~~Ll~lL~-----~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
.++-..++.-|+..+. +...+++-.....|-.+..+|...-.+ +. + +|.+-..|...+..+|-+++.+|..+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e~-~-Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-EQ-L-LPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-HH-H-HHhcchhhhccchhHHHHHHHHHHHH
Confidence 1221222222333321 223355555555666666555443332 21 1 56666667778889999999988777
Q ss_pred hcc
Q 046850 631 CKD 633 (686)
Q Consensus 631 ~~~ 633 (686)
-..
T Consensus 330 k~v 332 (1005)
T KOG1949|consen 330 KAV 332 (1005)
T ss_pred Hhh
Confidence 543
No 455
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.32 E-value=1.1e+03 Score=29.26 Aligned_cols=177 Identities=22% Similarity=0.248 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC----------CCHHHHHHHHHHhhcc-----ccccccHH------
Q 046850 413 QAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS----------HDPRIQENAVTALLNL-----SIFDNNKI------ 471 (686)
Q Consensus 413 ~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s----------~~~~~~~~A~~aL~nL-----s~~~~~k~------ 471 (686)
..+.+++....-|...+..+.++|+...|...|.. .|.-+-..-...|..+ +.+..|+.
T Consensus 751 dlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvI 830 (2799)
T KOG1788|consen 751 DLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVI 830 (2799)
T ss_pred HHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeee
Confidence 34555666665566788889999998888876642 1211212222222211 11222221
Q ss_pred -------HHHhcC---------cHHHH----HHHHcCCCCHHHHHHHHHHHHHhccCc-----------hhhhHhhcCCC
Q 046850 472 -------LIMAAG---------AIDSI----IEVLQSGKTMEARENAAATIFSLSMID-----------DCKVMIGGRPR 520 (686)
Q Consensus 472 -------~i~~~g---------~l~~L----v~lL~~~~~~e~~~~aa~~L~~Ls~~~-----------~~~~~i~~~~g 520 (686)
.+.+.| .+..| .+.+-.+ ....-..|++.++.+-.+- ..+..|.. .|
T Consensus 831 TsqtftsLLresgllcvnler~viqlllElalevlvpp-fLtSEsaAcaeVfelednifavntPsGqfnpdk~~iyn-ag 908 (2799)
T KOG1788|consen 831 TSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPP-FLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYN-AG 908 (2799)
T ss_pred eHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCc-hhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcc-cc
Confidence 222333 11111 1222222 3334456777777764221 34566777 89
Q ss_pred cHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHh---cCCCchhHHHHHHHHHHHhCC
Q 046850 521 AIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELL---MDDKAGITDDALAVLALLLGC 591 (686)
Q Consensus 521 ~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL---~~~~~~v~~~al~~L~nLa~~ 591 (686)
++..|+.++-...+..+..-+..+..+++.++ |..-.-..|.+..|++.+ .+++......+++++..|+..
T Consensus 909 avRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 909 AVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred hhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 99999999888889999999999999998777 666666779999999987 345566777888888888753
No 456
>PLN02400 cellulose synthase
Probab=30.19 E-value=31 Score=42.02 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=35.6
Q ss_pred CcccccCcccC-----cCceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLM-----RDPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m-----~dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 44899999753 245443 677779999997666778999999987754
No 457
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=30.14 E-value=30 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.515 Sum_probs=28.5
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
.-.|-+|..-...| |+.||..|--+ ...|..|++.+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeecc
Confidence 45899998765443 88999999332 5689999998744
No 458
>PRK14707 hypothetical protein; Provisional
Probab=30.09 E-value=1.5e+03 Score=30.55 Aligned_cols=271 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHH
Q 046850 396 AEFLVGKLA--MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KIL 472 (686)
Q Consensus 396 i~~Lv~~L~--s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~ 472 (686)
+..|++.++ .++.+.+..+......++. .+..+..+-.+|+...|-.+-+=++.....+|+..|...-.++.. +..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~ 243 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE 243 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
+-..|+-..|=.+-+=+.+..-...+.++=..|......+..+.. .++-..|-.+-+-.+.++-..|+.+|..=..++.
T Consensus 244 ~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~ 322 (2710)
T PRK14707 244 LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAERLADDP 322 (2710)
T ss_pred CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH
Q ss_pred cHHHHHHcCcHHHHHHHhcC-CCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMD-DKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSITLLLG 629 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L~~ 629 (686)
.-..-.+.-.+..++..|+. ++..+...|+..|..=...+.....-++.-+ +...+.-+.. .++..+..|...-..
T Consensus 323 ~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~ 401 (2710)
T PRK14707 323 ELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEH 401 (2710)
T ss_pred hhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHH
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLR 672 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~ 672 (686)
+..+ .+....+-. .|+-..|-.|.+=.+..+-..|...|.
T Consensus 402 l~~d--~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 402 VVDD--LELRKGLDP-QGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred hccC--hhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHHHHH
No 459
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.00 E-value=18 Score=37.84 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=31.2
Q ss_pred CCcccccCcccCcCceEc---cCccc--ccHHhHHHHHhhCCCCCCCCCc
Q 046850 282 DEFRCPISLDLMRDPVIV---ASGHT--YDRNSIAQWINSGHHTCPKSGQ 326 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~---~cght--~cr~ci~~w~~~~~~~CP~c~~ 326 (686)
..-.||+|+..-.--|+. .-|+. +|..|=..|--. ...||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 456999999865444432 34543 588898899655 788999986
No 460
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=29.84 E-value=6.2e+02 Score=27.36 Aligned_cols=177 Identities=15% Similarity=0.002 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc----c----C---ChHHHHHHHHHHHHhcCCCCcHHHHHH
Q 046850 491 TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR----E----G---TTAGKKDAATALFNLAVYNANKASVVV 559 (686)
Q Consensus 491 ~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~----~---~~~~~~~Al~aL~nLs~~~~~~~~iv~ 559 (686)
+...|..|..+|.+.-...++.........-++.+++.++ . + +.++...|+.+|..+..++.....+-.
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 5566777777777765544322211111223444544432 1 2 457888999999999877654333322
Q ss_pred c---CcHHHHHHHhcCC--CchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-----CChHHHHHHHHHHHH
Q 046850 560 A---GAVPLLIELLMDD--KAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-----GSAKGKENSITLLLG 629 (686)
Q Consensus 560 ~---G~v~~Ll~lL~~~--~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-----~s~~~ke~A~~~L~~ 629 (686)
. -++...+..|.++ +..+...++. -|+...-+.. ++.... +..++..+.. ++..+....+.++.+
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~---~ls~Q~f~~~-~~~~~~-~~~l~~~l~~i~~~~~s~si~~erL~i~~~ 160 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLW---CLSDQKFSPK-IMTSDR-VERLLAALHNIKNRFPSKSIISERLNIYKR 160 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHcCCCCCc-ccchhh-HHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 2 1345555556443 3344444444 4433111111 233333 4555554433 456677777888888
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
|....+........ -.+|.++.-+-+.....|.+|..++..+.
T Consensus 161 ll~q~p~~M~~~~~---~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 161 LLSQFPQQMIKHAD---IWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 88776444444432 15777887777777777777777666554
No 461
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=29.15 E-value=4.3e+02 Score=25.54 Aligned_cols=73 Identities=18% Similarity=0.017 Sum_probs=50.2
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMI-DDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
.++.+.+=|.+. ....+-.|...+..|... ...+..=.- ...|.+|-..|.+.++++...++.+|..|+...+
T Consensus 39 ~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 455555556655 556666777777777655 222222222 5677888888999999999999999999966544
No 462
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.06 E-value=1.3e+02 Score=28.94 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=45.8
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
++.+.++..+.+...+..|+.++..+...|= +... -.+|.|+.|..+.++..+..|..+++.+.+-
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGL---vnP~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGL---VNPK----QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC---CChH----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 4566666666777888888888766665431 1111 1488888888888888888888888877554
No 463
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.96 E-value=54 Score=36.28 Aligned_cols=170 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHH
Q 046850 415 AYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTME 493 (686)
Q Consensus 415 l~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e 493 (686)
...+..... ++.||..+.. ..+|-.+.....++ ..+.+.++..+..++.+...-.+.++...+.+--.+++.. ...
T Consensus 226 ~~~fv~k~e-~e~n~~~iGk~~~~I~~~~~~ieS~-~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~-~~~ 302 (763)
T KOG4231|consen 226 ASTFVKKME-DEGNRSVIGKDENAIRQLISMIESD-QHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLS-SPD 302 (763)
T ss_pred HHHHHHHhh-Ccccceeecccchhhhhhccccccc-chhhcccccccccHHHHHHHHHHHHHHHhcCcchhhhhhc-ccc
Q ss_pred HHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHc-CcHHHHHHHhcC
Q 046850 494 ARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVA-GAVPLLIELLMD 572 (686)
Q Consensus 494 ~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~-G~v~~Ll~lL~~ 572 (686)
.......+..+........+-.-.......+-.+.-+.+++++..|..++.+++.+.+||...+.. ..-..+++++..
T Consensus 303 -I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~ 381 (763)
T KOG4231|consen 303 -IISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVT 381 (763)
T ss_pred -HhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcc
Q ss_pred CCchhHHHHHHHHHHH
Q 046850 573 DKAGITDDALAVLALL 588 (686)
Q Consensus 573 ~~~~v~~~al~~L~nL 588 (686)
+.+.+-+.+..+++.+
T Consensus 382 ~~~~~~~~~~~a~~~~ 397 (763)
T KOG4231|consen 382 PEPRVNKAAARALAIL 397 (763)
T ss_pred cccccchhhhHHHHHh
No 464
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=28.94 E-value=6.3e+02 Score=25.70 Aligned_cols=71 Identities=27% Similarity=0.325 Sum_probs=46.3
Q ss_pred CCcHHHHHHhcccCCh--------HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC--CchhHHHHHHHHHHH
Q 046850 519 PRAIPALVGLLREGTT--------AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDD--KAGITDDALAVLALL 588 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~~--------~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~--~~~v~~~al~~L~nL 588 (686)
..++|+++++++.++. -+.+....+|+. +..|-++.|.+++.++ +.-++..|+.+|..+
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilas-----------v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l 140 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILAS-----------VGDGDIEPLKELIEDPDADEYVRMAAISALAFL 140 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHH-----------HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 6789999999875543 112222223333 3346688888888665 556788889999998
Q ss_pred hC-ChhcHHHHHh
Q 046850 589 LG-CREGLEEIRK 600 (686)
Q Consensus 589 a~-~~~~~~~i~~ 600 (686)
+. ++..|..+++
T Consensus 141 ~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 141 VHEGPISREEVIQ 153 (249)
T ss_pred HHcCCCCHHHHHH
Confidence 75 5666777655
No 465
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.91 E-value=38 Score=39.09 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=32.9
Q ss_pred CCCcccccCcccCcCce--EccCcccccHHhHHHHHhhCCCCCCC-CCcc
Q 046850 281 PDEFRCPISLDLMRDPV--IVASGHTYDRNSIAQWINSGHHTCPK-SGQR 327 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv--~~~cght~cr~ci~~w~~~~~~~CP~-c~~~ 327 (686)
...|.|.+|.--.+--- ...|||..-.+|...||+.| ..||. |+..
T Consensus 1026 ~~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g-d~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG-DVCPSGCGCH 1074 (1081)
T ss_pred cceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcC-CcCCCCCCcC
Confidence 34577888865444332 23899999999999999985 48884 5554
No 466
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.85 E-value=30 Score=35.18 Aligned_cols=52 Identities=15% Similarity=0.393 Sum_probs=30.8
Q ss_pred CCCCcccccCcccCc-Cce--------EccCcccccHHhHH-HHHhhC---------CCCCCCCCccccCC
Q 046850 280 IPDEFRCPISLDLMR-DPV--------IVASGHTYDRNSIA-QWINSG---------HHTCPKSGQRLIHM 331 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~-dPv--------~~~cght~cr~ci~-~w~~~~---------~~~CP~c~~~l~~~ 331 (686)
-+..|.|+.|...+. -|- .++|-..+|..-+. .|+-+| .+.||.|++.+.++
T Consensus 158 s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 158 SKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred ccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 367899999987543 221 12333333433332 466543 36799999988764
No 467
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.64 E-value=2.5e+02 Score=24.75 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHH
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAE 434 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~ 434 (686)
....|+.|+..|...+.++...|+..|...+.++ .+...++.
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4467899999999999999999999999998855 55555543
No 468
>PLN03205 ATR interacting protein; Provisional
Probab=28.60 E-value=1.9e+02 Score=31.19 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCchhHHHHHHHHH----HHhCChhcHHHHHhCCCChHHHHHHHhc-----CChHHHHHHHHHHHHhhccC
Q 046850 564 PLLIELLMDDKAGITDDALAVLA----LLLGCREGLEEIRKCRVLVPLLIDLLRF-----GSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 564 ~~Ll~lL~~~~~~v~~~al~~L~----nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-----~s~~~ke~A~~~L~~L~~~~ 634 (686)
.+|+.+..-++..++..++++|. .|+.+...-.+-++.+. -.|.+++.. ....++-.|+.++--+....
T Consensus 326 EaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NW--vsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 326 EPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANW--HSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccH--HHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34555545555566666666544 55654444444455554 344444432 34457778888876655444
Q ss_pred hH-HHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Q 046850 635 GE-EVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNRC 677 (686)
Q Consensus 635 ~~-~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 677 (686)
+. ..++.+.. ..+++.+-.+++.. ..++|+.|.-+|-++-++
T Consensus 404 na~~eREkFG~-~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC 447 (652)
T PLN03205 404 DAYTARESFVS-KEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC 447 (652)
T ss_pred chhHHHHHhcc-hHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC
Confidence 33 33444444 45777888877765 778999999998887664
No 469
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=28.58 E-value=5.8e+02 Score=28.98 Aligned_cols=142 Identities=15% Similarity=0.040 Sum_probs=79.7
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc--------CChHHHHHHHHHHHHhcC
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE--------GTTAGKKDAATALFNLAV 549 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~--------~~~~~~~~Al~aL~nLs~ 549 (686)
++..+++.+-.+ +...+..|+..|. .+... .-.+|.++.++.. .+.+.....+..++.|..
T Consensus 208 Yy~~It~a~~g~-~~~~r~eAL~sL~---TDsGL-------~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 208 YYKEITEACTGS-DEPLRQEALQSLE---TDSGL-------QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHhhc---cCccH-------HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 344455555555 6666766655542 22111 1234555555543 345777778888888888
Q ss_pred CCCcHHHHHHcCcHHHHHHHhcC----------CCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CCh-
Q 046850 550 YNANKASVVVAGAVPLLIELLMD----------DKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSA- 617 (686)
Q Consensus 550 ~~~~~~~iv~~G~v~~Ll~lL~~----------~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~- 617 (686)
++...-.-.=+.++|.++.++-+ .+-.+++.|+.++..+|..-.....-++... +..+.+.+.. +.+
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Ri-t~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRI-TRTLSKALLDNKKPL 355 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHhcCCCCCc
Confidence 87755555556678888888722 2345788899999999864333222233333 4555554433 233
Q ss_pred HHHHHHHHHHHHhh
Q 046850 618 KGKENSITLLLGLC 631 (686)
Q Consensus 618 ~~ke~A~~~L~~L~ 631 (686)
...--|+..|..|.
T Consensus 356 st~YGai~gL~~lg 369 (576)
T KOG2549|consen 356 STHYGAIAGLSELG 369 (576)
T ss_pred hhhhhHHHHHHHhh
Confidence 23334455554444
No 470
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=28.04 E-value=3.6e+02 Score=35.61 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHhhccccccccHHHH----HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcH
Q 046850 447 SHDPRIQENAVTALLNLSIFDNNKILI----MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAI 522 (686)
Q Consensus 447 s~~~~~~~~A~~aL~nLs~~~~~k~~i----~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i 522 (686)
+.+..+...|+..|..|+..--.+..+ .+...++++..++.+..+.++++..+.++.++..... ..| ..++
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~--~nI---kSGW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV--NNV---KSGW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH--hhh---hcCc
Confidence 456778888999888877532222222 2345788899888876688999999999998865432 233 2256
Q ss_pred HHHHHhcc----cCChHHHHHHHHHHHHhcCCCCcHHHHHH--cCcHHHHHHHh----cC-CCchhHHHHHHHHHHH
Q 046850 523 PALVGLLR----EGTTAGKKDAATALFNLAVYNANKASVVV--AGAVPLLIELL----MD-DKAGITDDALAVLALL 588 (686)
Q Consensus 523 ~~Lv~lL~----~~~~~~~~~Al~aL~nLs~~~~~~~~iv~--~G~v~~Ll~lL----~~-~~~~v~~~al~~L~nL 588 (686)
+.++.+|. +..+.+...|...+..+.... -..+.. .+.+.-++..| .. .+..+--.|+..|+++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~--f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY--FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh--hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 66666664 445778888888877665421 111111 24444455554 22 2466777788888877
No 471
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=27.86 E-value=33 Score=35.33 Aligned_cols=25 Identities=20% Similarity=0.628 Sum_probs=16.5
Q ss_pred CcccccCcccCc--C-ceEccCcccccH
Q 046850 283 EFRCPISLDLMR--D-PVIVASGHTYDR 307 (686)
Q Consensus 283 ~~~Cpic~~~m~--d-Pv~~~cght~cr 307 (686)
.|.||+|...|. + ...-..||+|..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 489999999884 2 223356777754
No 472
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.85 E-value=2.6e+02 Score=24.34 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=45.1
Q ss_pred cccccHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHhhcccccccCCCC--CChHHHHHHHhhcCCC---CHHHH
Q 046850 131 LLNITADIREQVELLHRQAKRAELFVDAKELHRRDDLLEIMTSNNEKNIKNKGF--IDMGRLKEILSSIGLT---SPLDY 205 (686)
Q Consensus 131 ~l~~s~ev~e~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~---~~~~~ 205 (686)
-.+...++.|++..|..+|- .+-+.+-++..+-+..+++ +.++ ..+.. ..+..++.+.+.+++. ...++
T Consensus 15 gaG~~a~~~ek~~klvDelV---kkGeln~eEak~~vddl~~--q~k~-~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l 88 (108)
T COG3937 15 GAGLAAETAEKVQKLVDELV---KKGELNAEEAKRFVDDLLR--QAKE-AQGELEEKIPRKIEEMLSDLEVARQSEMDEL 88 (108)
T ss_pred hccHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHH--HHHH-HhhhHHHhhhHHHHHHHhhccccccchHHHH
Confidence 34456667777777776654 1223344445555555554 2211 11111 1334566666777754 34567
Q ss_pred HHHHHHHHHHHHHh
Q 046850 206 EEEISKLEAEAQKQ 219 (686)
Q Consensus 206 ~~E~~~l~~~~~~~ 219 (686)
..++.+|++++.+.
T Consensus 89 ~~rvd~Lerqv~~L 102 (108)
T COG3937 89 TERVDALERQVADL 102 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887654
No 473
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=27.80 E-value=48 Score=38.95 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=36.0
Q ss_pred CCcccccCcccCc--CceEc--cCcccccHHhHHHHHhh------CCCCCCCCCcc
Q 046850 282 DEFRCPISLDLMR--DPVIV--ASGHTYDRNSIAQWINS------GHHTCPKSGQR 327 (686)
Q Consensus 282 ~~~~Cpic~~~m~--dPv~~--~cght~cr~ci~~w~~~------~~~~CP~c~~~ 327 (686)
..+.|-||.+.+. +||-- +|-|.|-..||.+|-.. ....||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 3578999999885 66632 67799999999999875 34679999843
No 474
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.39 E-value=1.4e+03 Score=29.25 Aligned_cols=256 Identities=15% Similarity=0.068 Sum_probs=124.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHH---H-HHhhcCCCHHHHHHHHHHhhcccccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPF---L-VTLLSSHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~---L-v~lL~s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
.....+++.|...|+..+.+|+.+|..+..... -... .|++|. + .++..+.+..+|...-.++.++... -
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~--~e~~--~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~--l 114 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSD--TEEL--KGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK--L 114 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhccccc--chHH--hhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH--H
Confidence 345677888888899999999999999876322 2211 123433 2 2456678999999988888887531 1
Q ss_pred HHHHHhcCcHHHHHHHHc---CCCCHHHHHHHHHHHHHhccCchhhhHhhcC-CCcHHHHHHhcc---------------
Q 046850 470 KILIMAAGAIDSIIEVLQ---SGKTMEARENAAATIFSLSMIDDCKVMIGGR-PRAIPALVGLLR--------------- 530 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~---~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~lL~--------------- 530 (686)
+..+.. .++.++...- ......+-..|-..+......+..+....-. ....+.+-+.+-
T Consensus 115 kk~lsp--~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~ 192 (1312)
T KOG0803|consen 115 KKKLSP--FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSS 192 (1312)
T ss_pred HHHhhH--HHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcch
Confidence 222211 1222221111 1112333333333333333211111111110 111111112111
Q ss_pred ----cCChHHHHHHHHHHHHhcCCCCcHHHHH--Hc--Cc---HHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHH
Q 046850 531 ----EGTTAGKKDAATALFNLAVYNANKASVV--VA--GA---VPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIR 599 (686)
Q Consensus 531 ----~~~~~~~~~Al~aL~nLs~~~~~~~~iv--~~--G~---v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~ 599 (686)
....++...++.+|..+......-..+. +. +. -..+..++.+..+.+......++..+..+-..+-.-.
T Consensus 193 Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~ 272 (1312)
T KOG0803|consen 193 EELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMES 272 (1312)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchh
Confidence 1123666777777776653332222222 11 11 2345666677788888888888888876544441111
Q ss_pred hCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHH--cCCCChHHHHHHHh-cC
Q 046850 600 KCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLL--INPRSIPSLQSLTT-DG 659 (686)
Q Consensus 600 ~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~--~~~g~i~~L~~Ll~-~~ 659 (686)
+..-+-+.+...+++.+ .+.-..+..+..+-..- ++..-.+- .+.|+.|.+..+++ +|
T Consensus 273 ~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~-p~~~~~~~~~~~k~il~~l~~~irkn~ 333 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSL-PDEWLHLNSLLKKGILPLLSNLIRKNG 333 (1312)
T ss_pred hhhHhhHHHHccccccc-cccHHHHHHHHHHhhhh-hHHHhcccchhccchhHHHHHHHhhcc
Confidence 11221233334444333 33444455444222222 22222222 22678899988888 55
No 475
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.31 E-value=5.3e+02 Score=24.86 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=68.2
Q ss_pred HHHHHH-HHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc----CC-CcH--------------HHHHHhcccC-ChHHH
Q 046850 479 IDSIIE-VLQSGKTMEARENAAATIFSLSMIDDCKVMIGG----RP-RAI--------------PALVGLLREG-TTAGK 537 (686)
Q Consensus 479 l~~Lv~-lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~----~~-g~i--------------~~Lv~lL~~~-~~~~~ 537 (686)
-+.|+. ++.++ +..+|..|+.+|..|-.....--...+ .. .+. ..|+..|..+ +....
T Consensus 41 ~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 41 TPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 334444 44555 999999999999998766521111111 01 111 2344444444 56788
Q ss_pred HHHHHHHHHhcCCCC-cHHHHHHcCcHH----HHHHHhcCCCchhHHHHHHHHHHHhCC
Q 046850 538 KDAATALFNLAVYNA-NKASVVVAGAVP----LLIELLMDDKAGITDDALAVLALLLGC 591 (686)
Q Consensus 538 ~~Al~aL~nLs~~~~-~~~~iv~~G~v~----~Ll~lL~~~~~~v~~~al~~L~nLa~~ 591 (686)
...+++|..|..+.+ +|-. .|.++ .+..++.+.+..++..++.++..|...
T Consensus 120 ~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 889999999988776 3321 34444 444455678889999999999988753
No 476
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.25 E-value=6.8e+02 Score=29.98 Aligned_cols=235 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHH--------HHHHHcCCCCHHHHHHHHHHHHHhccC
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDS--------IIEVLQSGKTMEARENAAATIFSLSMI 508 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~--------Lv~lL~~~~~~e~~~~aa~~L~~Ls~~ 508 (686)
+|.++.+|.++..-+-.+|+.++..+-.-.++ ...+..++-+.+ +.+-++.+.+.|--..+=+++..+...
T Consensus 500 ~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~ 579 (960)
T KOG1992|consen 500 LPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL 579 (960)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC
Q ss_pred chhh---hHhhcCCCcHHHHHHhcccCCh-----HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHH
Q 046850 509 DDCK---VMIGGRPRAIPALVGLLREGTT-----AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDD 580 (686)
Q Consensus 509 ~~~~---~~i~~~~g~i~~Lv~lL~~~~~-----~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~ 580 (686)
++.. ....- .+..+.+-..-++++. -.-+..+..+...|..++......+...+|.+-..|..+-.+..-.
T Consensus 580 ~~~i~p~~~~~l-~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPY 658 (960)
T KOG1992|consen 580 QSAIIPHAPELL-RQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPY 658 (960)
T ss_pred HHhhhhhhhHHH-HHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhCChhc--------------HHHHHhCCCChHHHHHHHhc----CChHHH--HHHHHHHHHhhccChHHHHH
Q 046850 581 ALAVLALLLGCREG--------------LEEIRKCRVLVPLLIDLLRF----GSAKGK--ENSITLLLGLCKDGGEEVAR 640 (686)
Q Consensus 581 al~~L~nLa~~~~~--------------~~~i~~~~~~i~~Lv~lL~~----~s~~~k--e~A~~~L~~L~~~~~~~~~~ 640 (686)
++.+|+-|.....+ ...+++..+.+|.++.+++. ++.... +....+|..+-.--+...-+
T Consensus 659 vfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D 738 (960)
T KOG1992|consen 659 VFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND 738 (960)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc
Q ss_pred HHHcCCC--ChHHHHHHHhcC--CHHHHHHHHHHHHHHHhc
Q 046850 641 RLLINPR--SIPSLQSLTTDG--SLKARRKADALLRLLNRC 677 (686)
Q Consensus 641 ~l~~~~g--~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~~ 677 (686)
. .| ++..++..+... .+..+.-...+++.+++.
T Consensus 739 h----~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqns 775 (960)
T KOG1992|consen 739 H----HGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNS 775 (960)
T ss_pred h----hHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhcc
No 477
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=26.96 E-value=6.5e+02 Score=25.18 Aligned_cols=126 Identities=15% Similarity=0.091 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCC-------------H-----HHHHHHHHHhhccccccccHH
Q 046850 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD-------------P-----RIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 410 ~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~-------------~-----~~~~~A~~aL~nLs~~~~~k~ 471 (686)
-...++..+..|... ++.-..+.+.+.++-+.+.|..-| + .+...=...|+.||.+..+..
T Consensus 80 y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 80 YVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 334556666777663 454445557777777777664321 1 122223357888998888887
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHH-HHHHhcccCChHHHHHHHHHHHHhc
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIP-ALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~-~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
.+-+.+.+..+..+......... ..-+|.+|-... .|... .|-..|.+++..++..|..-|..+.
T Consensus 159 lLe~~~if~~l~~i~~~~~~~~l---~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 159 LLERWNIFTMLYHIFSLSSRDDL---LKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHCCHHHHHHHHHccCchHHH---HHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 77788999999999987622222 223555553222 12222 2334677888899999998887764
No 478
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.23 E-value=1.2e+02 Score=31.56 Aligned_cols=55 Identities=27% Similarity=0.254 Sum_probs=44.5
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCc--------------hhHHHHHHhCCHHHHHHhhcC
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGM--------------DNRRIIAEAGAIPFLVTLLSS 447 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~--------------~~r~~i~~~g~i~~Lv~lL~s 447 (686)
+..+..+++.|.+++...+..|+++|.-++.+.- .|-..+.+.|+++.|+.+|+.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4578889999999999999999999998887542 355567788999999988863
No 479
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.94 E-value=51 Score=34.98 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=28.3
Q ss_pred cccccCcccCc---CceEccCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 284 FRCPISLDLMR---DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 284 ~~Cpic~~~m~---dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
+.|.|+++.|. .|+..+-|++|-...|..|-...+-.||.+++.+
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f 378 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVF 378 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccc
Confidence 55666666664 2666677777777777777554336677766554
No 480
>PF04641 Rtf2: Rtf2 RING-finger
Probab=25.08 E-value=58 Score=33.37 Aligned_cols=35 Identities=20% Similarity=0.513 Sum_probs=31.2
Q ss_pred CcccccCcccCcCceEc-cCcccccHHhHHHHHhhC
Q 046850 283 EFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSG 317 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~ 317 (686)
-+.|+++++.+.+||+. .-|+-|-...|.+|+...
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 46899999999999965 689999999999999873
No 481
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.94 E-value=2.9e+02 Score=25.39 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=56.2
Q ss_pred CCcHHHHHHhccc-CChHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHH-HHHHhcC---CCchhHHHHHHHHHHHhC
Q 046850 519 PRAIPALVGLLRE-GTTAGKKDAATALFNLAVYNA--NKASVVVAGAVPL-LIELLMD---DKAGITDDALAVLALLLG 590 (686)
Q Consensus 519 ~g~i~~Lv~lL~~-~~~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~-Ll~lL~~---~~~~v~~~al~~L~nLa~ 590 (686)
..++..|-.-|.+ .++.+...|+..|-.+..+.+ ....+...+.+.- |++++.. .+..++..++.++...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3466777777764 478889999999999998776 5677778889987 8999863 245788999999988874
No 482
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=24.41 E-value=2.6e+02 Score=23.12 Aligned_cols=56 Identities=14% Similarity=0.323 Sum_probs=40.5
Q ss_pred hhchHHHHHHHH--HhhHHHHHHHhhcCCCCChhHHHhhHH-HHHHHHHHHHHHHhcc-CC
Q 046850 41 QMRNVSTMIRRI--KLLYSLFDEIQETKCPLPPSSILCLTE-LFSVIRRVKLLIQGCK-DG 97 (686)
Q Consensus 41 ~k~~~~~l~r~~--~ll~~lleel~~~~~~~~~~~~~~l~~-L~~~l~~ak~Ll~~c~-~~ 97 (686)
+|++=..|++.+ ..+.++|++|.+.+ -+.......+.. -....++|+.|+.+.. .|
T Consensus 2 ~~~~r~~~i~~l~~~~i~~llD~Ll~~~-Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG 61 (83)
T cd08325 2 LKEKRVKFIESVGKGVINGLLDDLLEKN-VLNEEEMEKIKEENNTIMDKARVLVDSVTEKG 61 (83)
T ss_pred ccchHHHHHHHhhHhhHHHHHHHHHHcC-CCCHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 456667788887 58899999999877 455555544444 3446899999999876 44
No 483
>PRK06424 transcription factor; Provisional
Probab=23.62 E-value=3.5e+02 Score=25.02 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=44.7
Q ss_pred cccHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHH---HHHhhcccccccCC-CCCChHHHHHHHhhcCCC
Q 046850 133 NITADIREQVELLHRQAKRAELFVDAKELHRRDDLL---EIMTSNNEKNIKNK-GFIDMGRLKEILSSIGLT 200 (686)
Q Consensus 133 ~~s~ev~e~v~~~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~ 200 (686)
++.++..+.++.+-..++.++.....+.+++.+.+- ..+. + ++++ ..|+.+.+.+++..||++
T Consensus 73 d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIs--k---iE~G~~~Ps~~~l~kLa~~Lgvs 139 (144)
T PRK06424 73 KASDEDLDIVEDYAELVKNARERLSMSQADLAAKIFERKNVIA--S---IERGDLLPDIKTARKLEKILGIT 139 (144)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHH--H---HHCCCCCCCHHHHHHHHHHhCCC
Confidence 445555566777777788788888888888888772 3332 1 3333 457889999999999986
No 484
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=23.57 E-value=57 Score=38.11 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=50.8
Q ss_pred CCCCCCcccccCcccCcCceE-ccCcccccHHhHHHHHhh-----CCCCCCCCCccccCCCCCCcHHHHHHHHHHHH
Q 046850 278 PNIPDEFRCPISLDLMRDPVI-VASGHTYDRNSIAQWINS-----GHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQ 348 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~-~~cght~cr~ci~~w~~~-----~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~ 348 (686)
....-.+.|||++.-|.-|+- ..|.|--|-.. .|+-. +...||+|.+......+..+.-+..+++..-.
T Consensus 301 t~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 301 TSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ccceeEecCCcccceeecCCcccccccceecch--hhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 356778999999999988874 48987554432 23332 45789999998888888888777777776655
No 485
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=22.95 E-value=1.5e+02 Score=25.21 Aligned_cols=56 Identities=9% Similarity=0.149 Sum_probs=43.2
Q ss_pred cchhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhcc
Q 046850 39 SVQMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCK 95 (686)
Q Consensus 39 ~~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 95 (686)
.+-|+|=..|++++.-..|+++.|...+ -+.......+..-...-++|+.|+..-.
T Consensus 9 ~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~-Vlt~ee~e~I~~~~t~~~qAr~Lld~l~ 64 (94)
T cd08329 9 SLIRKNRMALFQHLTSVLPILDSLLSAN-VITEQEYDVIKQKTQTPLQARELIDTVL 64 (94)
T ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 5668999999999988999999999776 5566555555555555689999988754
No 486
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=22.83 E-value=2.9e+02 Score=22.72 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=40.3
Q ss_pred hhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhcc
Q 046850 41 QMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCK 95 (686)
Q Consensus 41 ~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 95 (686)
-+++=..|+.++.-+.|+++.|...+ -+.++....+..-..--++|+.|+...-
T Consensus 3 v~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l~ 56 (82)
T cd08330 3 VDQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFVR 56 (82)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 36777899999999999999999765 5566655555555555678888877654
No 487
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=22.77 E-value=3.3e+02 Score=23.64 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=50.1
Q ss_pred CcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHHHHh------cCCCchhHHHHHHHHHHHh
Q 046850 520 RAIPALVGLLREGTTAGKKDAATALFNLAVYNA--NKASVVVAGAVPLLIELL------MDDKAGITDDALAVLALLL 589 (686)
Q Consensus 520 g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll~lL------~~~~~~v~~~al~~L~nLa 589 (686)
.++..|..-|.+.++.++..|+.+|-.|..+.+ ....+.+...+..++++. ...+..+++.+..++...+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 367777788888899999999999999998775 455555665555555431 1236678888888776654
No 488
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=48 Score=32.74 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=26.6
Q ss_pred cccCcccCcCceEccCcc-cccHHhHHHHHhhCCCCCCCCCccc
Q 046850 286 CPISLDLMRDPVIVASGH-TYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 286 Cpic~~~m~dPv~~~cgh-t~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
|-.|.+-=.-=++++|.| .+|..| ..+..+||.|+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C-----~~~~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGIC-----DESLRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEecccc-----cccCccCCCCcChh
Confidence 888887666544559997 577777 22357799997653
No 489
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.27 E-value=1.1e+03 Score=27.86 Aligned_cols=129 Identities=21% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc
Q 046850 438 IPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG 517 (686)
Q Consensus 438 i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~ 517 (686)
|.-|+.+|.+.+..+.+.+-..+..+...+..... +..||+..-+..+..+....+++
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~l~~y~~~t~s~~~~~il~~~---------------- 63 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREPWL------VNGLVDYYLSTNSQRALEILVGV---------------- 63 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHH------HHHHHHHHhhcCcHHHHHHHHhc----------------
Q ss_pred CCCcHHHHHHhccc--CChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHh-cCCCchhHHHHHHHHHHH
Q 046850 518 RPRAIPALVGLLRE--GTTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELL-MDDKAGITDDALAVLALL 588 (686)
Q Consensus 518 ~~g~i~~Lv~lL~~--~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL-~~~~~~v~~~al~~L~nL 588 (686)
..---..|++.|+. ..+.-+..++..|+.+....+ -.-.|++..+++.|+++| .+.+..++..|+.+|..|
T Consensus 64 ~~P~~K~~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 64 QEPHDKHLFDKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred CCccHHHHHHHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
No 490
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=22.23 E-value=3e+02 Score=29.20 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHcC--cHHHHHHHhcCC---CchhHHHHHHHHHHHhCChh
Q 046850 535 AGKKDAATALFNLAVYNANKASVVVAG--AVPLLIELLMDD---KAGITDDALAVLALLLGCRE 593 (686)
Q Consensus 535 ~~~~~Al~aL~nLs~~~~~~~~iv~~G--~v~~Ll~lL~~~---~~~v~~~al~~L~nLa~~~~ 593 (686)
.++-.|+..|.++...+.....++..+ ++.-|++++..+ ...++..|+.+|..++....
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 345567777777776777778888777 899999999542 56788999999999987443
No 491
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=22.14 E-value=3.1e+02 Score=22.13 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=47.9
Q ss_pred hhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhcc-CCchhHHHh
Q 046850 41 QMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCK-DGSSLWGLM 104 (686)
Q Consensus 41 ~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~-~~Sklyll~ 104 (686)
.+++...|++.+..+.++++.|...+ -+++.....+......-++++.|+..-. .|++-|-.+
T Consensus 4 L~~~r~~Lv~~l~~~~~ild~L~~~~-vlt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F 67 (85)
T PF00619_consen 4 LRKNRQELVEDLDDLDDILDHLLSRG-VLTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDIF 67 (85)
T ss_dssp HHHTHHHHHHHSSHHHHHHHHHHHTT-SSSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHhHHHHHHHhCcHHHHHHHHHHCC-CCCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHHH
Confidence 46888999999998999999999766 5677777666666667788998888744 666554433
No 492
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=58 Score=33.22 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=32.0
Q ss_pred CCCcccccCcccCcCceEc----cCcccc--cHHhHHHHHhhCCCCCCCCCcc
Q 046850 281 PDEFRCPISLDLMRDPVIV----ASGHTY--DRNSIAQWINSGHHTCPKSGQR 327 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~----~cght~--cr~ci~~w~~~~~~~CP~c~~~ 327 (686)
+.--.||+|+..-.--++. .-|-.| |.-|-..|.-- ...|-.|++.
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~V-R~KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYV-RVKCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHH-HHHhcccccc
Confidence 3445899999865555443 334445 88999999775 5678888765
No 493
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=21.89 E-value=2.9e+02 Score=22.96 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHHHhhhc---cChhhhHHHHHHHHHHhhcccccccCCCCCChHHHH
Q 046850 115 VLVKEMGRALDILPLSLLNITADIREQVELLHRQAKRAELF---VDAKELHRRDDLLEIMTSNNEKNIKNKGFIDMGRLK 191 (686)
Q Consensus 115 ~~~~~l~~~L~~lp~~~l~~s~ev~e~v~~~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 191 (686)
..-..|..-|+..|- ++++-++.+..+..+.+++-.. ....+..+.+.+..++. + |+-+...=...++
T Consensus 4 ~~L~~L~~eL~~~~~----ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~--~---FE~~HP~l~~~lr 74 (85)
T PF14357_consen 4 ELLEKLHQELEQNPP----LDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVE--R---FEASHPKLAGILR 74 (85)
T ss_pred HHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHH--H---HHHhCCcHHHHHH
Confidence 333444445554421 2344455555555544443322 44556667777766654 3 6655422223344
Q ss_pred HHHh
Q 046850 192 EILS 195 (686)
Q Consensus 192 ~~~~ 195 (686)
.|.+
T Consensus 75 ~i~~ 78 (85)
T PF14357_consen 75 NIMD 78 (85)
T ss_pred HHHH
Confidence 4443
No 494
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.79 E-value=2.8e+02 Score=31.09 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHH-HHHHhCCHHHHHHhhcCC--CHHHHHHHHHHh
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRR-IIAEAGAIPFLVTLLSSH--DPRIQENAVTAL 460 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~-~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL 460 (686)
+.++..|.+.+.+.+..+|..|+..|..+.+.....=. .|++.+++.-+|.+.+.. +..+++.++.+|
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHH
No 495
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=21.77 E-value=1.8e+02 Score=31.69 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=31.7
Q ss_pred HhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHH
Q 046850 527 GLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDD 580 (686)
Q Consensus 527 ~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~ 580 (686)
++++..+.-.-.+++.||.|++..-.+-...+....+ .|+.+|......+.+.
T Consensus 475 NmlktRDkYLHTNCLAALANMSa~Fr~LhpyvaQRli-SLf~lLtkkH~k~~~q 527 (695)
T KOG2225|consen 475 NMLKTRDKYLHTNCLAALANMSAFFRNLHPYVAQRLI-SLFDLLTKKHAKMVDQ 527 (695)
T ss_pred HHHHhHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4566667778889999999998765544444333222 3455554444444443
No 496
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=21.56 E-value=1.1e+03 Score=32.41 Aligned_cols=200 Identities=21% Similarity=0.185 Sum_probs=101.8
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-CKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
....+-+..+...+..+ .-..+..+...+++|+..+. +.-.-.. .--+..+-++..++..+.+.....-+..+....
T Consensus 561 laQ~~~lr~~~~al~~~-~l~~~~~~~~~ig~l~~~~~a~vl~~lr-~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDE-NFAIQELATVIIGRLSSYNPAYVLPSLR-KTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred hcCchhHHHHHHHhhhh-hhhhHHhHHhhccccccccHHHHhHHHH-HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 33445566666667776 77778888888888877543 1111111 112222222323333333333333322222211
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhc-HHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 046850 552 ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREG-LEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLLG 629 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~-~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~ 629 (686)
.-...-.-...+..++..+.+.+..+...++.++..||..... -...++ .+++.+.+.+.. ++..-+..+..++.+
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~--~~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD--ELFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc--hHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 1111111122335555666666667777788888888853321 111122 336666665544 666778899999999
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNRC 677 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~ 677 (686)
+++..+- .+.......-++..|...+..+ ..-+++.+...+.++...
T Consensus 717 l~s~~~~-~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 717 LESSTGY-VVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhcccce-EecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 9987543 1122122122455555555544 334566666666655443
No 497
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=21.46 E-value=3e+02 Score=29.72 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=59.8
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHHHh
Q 046850 604 LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTT-DGSLKARRKADALLRLLNR 676 (686)
Q Consensus 604 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~~l~~ 676 (686)
|+..|.+-|...++.+...|+.+|..+..+.+...+..+-. ..+...|..++. +..++++++...+++-..+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsS-r~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSS-RDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhh-hhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 37888888888899999999999999999888888787776 778889999998 6688888888777766554
No 498
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=21.34 E-value=30 Score=20.47 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=5.3
Q ss_pred ccccCcccCcC
Q 046850 285 RCPISLDLMRD 295 (686)
Q Consensus 285 ~Cpic~~~m~d 295 (686)
.||+|...+.+
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 45555544443
No 499
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=21.32 E-value=4.3e+02 Score=24.80 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=29.7
Q ss_pred chhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHH
Q 046850 40 VQMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRR 86 (686)
Q Consensus 40 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ 86 (686)
+.|+-+.+.-|||.+ ||+.++..+ ++..++.-+..|-.+|+.
T Consensus 62 ~~kr~~~D~~KRL~i---Lfd~ln~g~--Ls~~v~~~L~~L~~aL~~ 103 (157)
T PF07304_consen 62 IKKRVVDDIEKRLNI---LFDHLNNGK--LSKPVVDKLHQLAQALQA 103 (157)
T ss_dssp S-HHHHHHHHHHHHH---HHHHHHHT---S-HHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH---HHHHHhcCC--CCHHHHHHHHHHHHHHHc
Confidence 456667888888887 777787544 777788888888887763
No 500
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=21.31 E-value=3.9e+02 Score=22.28 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=34.4
Q ss_pred hhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHH---HHHHHHHHHHHHhcc
Q 046850 41 QMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTEL---FSVIRRVKLLIQGCK 95 (686)
Q Consensus 41 ~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L---~~~l~~ak~Ll~~c~ 95 (686)
.|.|=..|+.+|+-..|+++.|...+ -++.+.....+.- ..-+++...+++.|.
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~-~it~E~y~~V~a~~T~qdkmRkLld~v~akG 59 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKND-YFSTEDAEIVCACPTQPDKVRKILDLVQSKG 59 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccC-CccHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 35677889999999999999998775 3444333333322 333444445556665
Done!