Query 046850
Match_columns 686
No_of_seqs 454 out of 2822
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xm9_A Plakophilin 1; armadill 100.0 3.9E-29 1.3E-33 277.2 23.3 280 394-677 2-361 (457)
2 3nmw_A APC variant protein; AR 100.0 4.1E-29 1.4E-33 266.3 21.9 265 409-679 47-337 (354)
3 3l6x_A Catenin delta-1; cateni 100.0 8E-28 2.7E-32 269.6 25.4 281 394-677 48-385 (584)
4 3nmz_A APC variant protein; pr 100.0 6.1E-28 2.1E-32 264.8 22.6 261 412-678 166-452 (458)
5 3ul1_B Importin subunit alpha- 100.0 3.5E-27 1.2E-31 265.2 26.2 280 394-676 100-387 (510)
6 3tpo_A Importin subunit alpha- 100.0 8.9E-27 3.1E-31 263.2 28.4 280 394-676 119-406 (529)
7 3now_A UNC-45 protein, SD10334 100.0 5.1E-27 1.8E-31 271.4 26.8 281 393-676 420-737 (810)
8 1xm9_A Plakophilin 1; armadill 100.0 5.6E-27 1.9E-31 259.9 25.7 278 393-676 43-449 (457)
9 3nmz_A APC variant protein; pr 99.9 3.9E-27 1.3E-31 258.4 22.0 282 393-676 69-408 (458)
10 3nmw_A APC variant protein; AR 99.9 2.1E-27 7.2E-32 253.1 17.7 245 394-640 73-342 (354)
11 3l6x_A Catenin delta-1; cateni 99.9 5.9E-26 2E-30 254.5 25.4 280 393-677 89-477 (584)
12 3now_A UNC-45 protein, SD10334 99.9 1.5E-25 5.2E-30 259.2 24.4 280 394-678 495-784 (810)
13 4b8j_A Importin subunit alpha- 99.9 1E-24 3.5E-29 246.1 30.6 280 394-677 117-401 (528)
14 3tpo_A Importin subunit alpha- 99.9 8E-25 2.7E-29 247.2 29.3 281 393-677 161-450 (529)
15 4hxt_A De novo protein OR329; 99.9 1E-24 3.5E-29 220.6 24.8 239 394-635 2-244 (252)
16 3ul1_B Importin subunit alpha- 99.9 1.1E-24 3.7E-29 244.9 27.4 281 394-677 143-431 (510)
17 4db8_A Armadillo-repeat protei 99.9 4.3E-25 1.5E-29 224.1 21.5 236 395-633 13-252 (252)
18 4hxt_A De novo protein OR329; 99.9 4.6E-24 1.6E-28 215.8 25.2 245 436-685 2-250 (252)
19 1wa5_B Importin alpha subunit; 99.9 1.1E-23 3.7E-28 237.9 29.9 279 394-677 130-413 (530)
20 4b8j_A Importin subunit alpha- 99.9 2.6E-23 8.8E-28 234.7 31.4 280 394-677 160-444 (528)
21 2jdq_A Importin alpha-1 subuni 99.9 3.4E-23 1.1E-27 228.0 30.8 279 394-676 64-347 (450)
22 1wa5_B Importin alpha subunit; 99.9 1.1E-22 3.7E-27 229.8 31.1 282 393-678 172-459 (530)
23 2jdq_A Importin alpha-1 subuni 99.9 8.6E-23 3E-27 224.7 29.3 281 393-678 106-392 (450)
24 4db8_A Armadillo-repeat protei 99.9 4.6E-23 1.6E-27 209.1 21.1 235 436-675 12-250 (252)
25 3tt9_A Plakophilin-2; cell adh 99.9 9.5E-23 3.2E-27 203.1 16.6 195 393-590 7-229 (233)
26 1jdh_A Beta-catenin; beta-cate 99.9 1E-21 3.5E-26 220.9 26.9 279 394-677 101-386 (529)
27 1jdh_A Beta-catenin; beta-cate 99.9 7.4E-22 2.5E-26 222.1 24.0 275 394-676 59-339 (529)
28 2z6h_A Catenin beta-1, beta-ca 99.9 2.1E-21 7.2E-26 224.5 24.3 275 394-676 56-336 (644)
29 2z6h_A Catenin beta-1, beta-ca 99.9 4.5E-21 1.5E-25 221.7 26.2 279 394-677 98-383 (644)
30 3tt9_A Plakophilin-2; cell adh 99.9 4.7E-22 1.6E-26 198.0 15.3 194 437-633 9-230 (233)
31 3opb_A SWI5-dependent HO expre 99.9 2.4E-21 8.4E-26 219.9 22.2 286 393-681 375-733 (778)
32 4db6_A Armadillo repeat protei 99.9 3.9E-21 1.3E-25 189.3 20.5 195 394-590 12-209 (210)
33 4db6_A Armadillo repeat protei 99.9 6.1E-21 2.1E-25 188.0 20.5 197 434-633 10-210 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 2.6E-20 9E-25 219.4 24.7 277 394-678 360-665 (780)
35 2z6g_A B-catenin; FULL-length, 99.9 4.7E-20 1.6E-24 217.3 26.0 278 394-676 234-518 (780)
36 1xqr_A HSPBP1 protein; armadil 99.8 4.1E-19 1.4E-23 184.2 22.2 235 395-632 29-287 (296)
37 3opb_A SWI5-dependent HO expre 99.8 7.3E-19 2.5E-23 199.7 21.1 276 395-676 335-683 (778)
38 1xqr_A HSPBP1 protein; armadil 99.8 1.4E-17 4.8E-22 172.7 21.9 183 449-634 53-240 (296)
39 2kr4_A Ubiquitin conjugation f 99.8 8.9E-19 3E-23 146.2 6.6 74 277-351 8-81 (85)
40 1wgm_A Ubiquitin conjugation f 99.7 2.7E-18 9.2E-23 147.0 8.8 77 276-353 15-92 (98)
41 2kre_A Ubiquitin conjugation f 99.7 2E-18 6.8E-23 148.4 7.5 76 276-352 22-97 (100)
42 2f42_A STIP1 homology and U-bo 99.7 3E-18 1E-22 161.7 8.6 76 279-354 102-177 (179)
43 1t1h_A Gspef-atpub14, armadill 99.7 7.7E-18 2.6E-22 138.6 6.5 75 278-352 3-77 (78)
44 2c2l_A CHIP, carboxy terminus 99.7 9.7E-16 3.3E-20 158.2 15.8 78 277-354 202-279 (281)
45 2yu4_A E3 SUMO-protein ligase 99.6 3.2E-16 1.1E-20 133.4 5.8 74 279-352 3-85 (94)
46 3ztg_A E3 ubiquitin-protein li 99.6 5.2E-15 1.8E-19 125.7 8.3 77 276-352 6-85 (92)
47 3htk_C E3 SUMO-protein ligase 99.5 1.7E-13 5.7E-18 135.0 13.4 71 279-349 177-251 (267)
48 3grl_A General vesicular trans 99.5 2.4E-12 8.2E-17 142.9 21.0 275 394-675 21-341 (651)
49 3fl2_A E3 ubiquitin-protein li 99.4 1.2E-13 4E-18 124.2 6.4 70 280-349 49-119 (124)
50 1z6u_A NP95-like ring finger p 99.4 2.2E-13 7.6E-18 126.2 5.2 69 280-348 75-144 (150)
51 2bay_A PRE-mRNA splicing facto 99.3 3.3E-13 1.1E-17 104.3 2.8 54 283-337 3-57 (61)
52 3grl_A General vesicular trans 99.3 1.3E-10 4.5E-15 129.0 24.2 278 394-674 60-392 (651)
53 2y43_A E3 ubiquitin-protein li 99.3 8.3E-13 2.8E-17 113.6 5.3 71 279-350 18-89 (99)
54 2csy_A Zinc finger protein 183 99.3 1.3E-12 4.4E-17 108.0 5.4 62 278-341 10-71 (81)
55 3lrq_A E3 ubiquitin-protein li 99.3 9.3E-13 3.2E-17 113.4 4.6 72 279-350 18-90 (100)
56 2djb_A Polycomb group ring fin 99.3 3.7E-12 1.3E-16 102.6 7.3 61 275-336 7-68 (72)
57 2ecw_A Tripartite motif-contai 99.3 7.1E-13 2.4E-17 110.5 2.8 67 276-342 12-83 (85)
58 2egp_A Tripartite motif-contai 99.3 1.5E-13 5.2E-18 113.0 -1.7 65 278-342 7-77 (79)
59 2ckl_A Polycomb group ring fin 99.3 1.6E-12 5.5E-17 113.7 4.6 68 279-347 11-83 (108)
60 2yur_A Retinoblastoma-binding 99.3 4.4E-12 1.5E-16 102.8 6.8 54 276-329 8-63 (74)
61 2ecy_A TNF receptor-associated 99.3 4.5E-12 1.5E-16 100.3 6.2 55 278-332 10-64 (66)
62 2ecv_A Tripartite motif-contai 99.3 1.3E-12 4.3E-17 109.0 2.7 66 277-342 13-83 (85)
63 3l11_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 116.1 2.5 69 279-347 11-86 (115)
64 3hct_A TNF receptor-associated 99.3 2.6E-12 9E-17 114.2 4.5 69 278-346 13-81 (118)
65 2ckl_B Ubiquitin ligase protei 99.2 3E-12 1E-16 121.0 4.2 70 279-348 50-121 (165)
66 1jm7_B BARD1, BRCA1-associated 99.2 3.2E-12 1.1E-16 113.5 3.7 69 279-350 18-87 (117)
67 1oyz_A Hypothetical protein YI 99.2 3.9E-10 1.3E-14 115.7 18.9 198 393-631 22-220 (280)
68 3ltm_A Alpha-REP4; protein eng 99.2 5.4E-10 1.8E-14 109.5 18.9 187 394-634 19-205 (211)
69 4ayc_A E3 ubiquitin-protein li 99.2 5.6E-12 1.9E-16 115.4 4.2 64 281-347 51-114 (138)
70 1jm7_A BRCA1, breast cancer ty 99.2 8.2E-12 2.8E-16 109.9 3.6 68 281-348 19-88 (112)
71 3ltj_A Alpharep-4; protein eng 99.2 1.1E-09 3.8E-14 106.4 18.9 184 394-631 14-197 (201)
72 3ltm_A Alpha-REP4; protein eng 99.2 9.4E-10 3.2E-14 107.8 18.4 190 435-680 18-207 (211)
73 2ysl_A Tripartite motif-contai 99.2 4.3E-11 1.5E-15 96.6 6.9 56 277-332 14-71 (73)
74 3m62_A Ubiquitin conjugation f 99.1 1.6E-11 5.6E-16 141.1 5.4 75 277-352 885-960 (968)
75 2ysj_A Tripartite motif-contai 99.1 5.3E-11 1.8E-15 93.1 6.3 48 277-324 14-63 (63)
76 1g25_A CDK-activating kinase a 99.1 2.4E-11 8.3E-16 95.7 4.1 55 282-336 2-61 (65)
77 3ltj_A Alpharep-4; protein eng 99.1 4.6E-09 1.6E-13 101.9 20.9 185 436-676 14-198 (201)
78 3knv_A TNF receptor-associated 99.1 9.2E-12 3.1E-16 113.9 1.4 68 279-346 27-103 (141)
79 3hcs_A TNF receptor-associated 99.1 3.3E-11 1.1E-15 114.5 4.5 68 279-346 14-81 (170)
80 1rmd_A RAG1; V(D)J recombinati 99.1 5.6E-11 1.9E-15 105.3 4.9 68 279-346 19-87 (116)
81 3ng2_A RNF4, snurf, ring finge 99.1 4.4E-11 1.5E-15 95.9 3.6 57 279-336 6-69 (71)
82 2ecj_A Tripartite motif-contai 99.1 1E-10 3.5E-15 89.7 5.1 48 277-324 9-58 (58)
83 2d8t_A Dactylidin, ring finger 99.1 7.4E-11 2.5E-15 94.6 4.4 51 279-330 11-61 (71)
84 2ct2_A Tripartite motif protei 99.1 2.5E-10 8.5E-15 95.7 7.2 55 277-331 9-69 (88)
85 2ea6_A Ring finger protein 4; 99.0 1.8E-10 6.1E-15 91.7 5.0 53 277-330 9-68 (69)
86 1oyz_A Hypothetical protein YI 99.0 7.7E-09 2.6E-13 105.9 18.1 200 433-675 20-220 (280)
87 4fdd_A Transportin-1; heat rep 99.0 4.5E-09 1.5E-13 125.1 17.9 273 394-677 128-430 (852)
88 2ect_A Ring finger protein 126 99.0 4.8E-10 1.6E-14 91.7 6.0 59 277-336 9-70 (78)
89 1e4u_A Transcriptional repress 99.0 5.1E-10 1.7E-14 91.1 5.3 54 279-332 7-64 (78)
90 2xeu_A Ring finger protein 4; 99.0 1.5E-10 5.3E-15 90.6 2.0 54 282-336 2-62 (64)
91 1b3u_A Protein (protein phosph 98.9 5.8E-08 2E-12 109.7 21.7 264 394-674 164-429 (588)
92 4fdd_A Transportin-1; heat rep 98.9 2.9E-09 9.9E-14 126.7 11.1 277 394-678 174-473 (852)
93 1b3u_A Protein (protein phosph 98.9 3.6E-08 1.2E-12 111.4 18.7 265 394-674 87-351 (588)
94 1ibr_B P95, importin beta-1 su 98.9 1.9E-08 6.5E-13 110.1 15.4 276 394-680 128-441 (462)
95 2ep4_A Ring finger protein 24; 98.8 3.6E-09 1.2E-13 85.4 6.4 53 277-330 9-64 (74)
96 2vgl_B AP-2 complex subunit be 98.8 1.6E-07 5.3E-12 107.0 21.8 265 394-675 121-418 (591)
97 1chc_A Equine herpes virus-1 r 98.8 2.9E-09 9.8E-14 84.4 4.5 47 282-329 4-51 (68)
98 2ecn_A Ring finger protein 141 98.8 1.2E-09 4.1E-14 87.2 2.1 53 277-331 9-61 (70)
99 4gmo_A Putative uncharacterize 98.8 2.2E-08 7.5E-13 115.9 13.2 192 437-631 35-257 (684)
100 2kiz_A E3 ubiquitin-protein li 98.8 6.9E-09 2.4E-13 82.5 6.3 51 279-330 10-63 (69)
101 2ecm_A Ring finger and CHY zin 98.8 4.2E-09 1.4E-13 79.6 4.2 47 282-329 4-54 (55)
102 1iym_A EL5; ring-H2 finger, ub 98.8 4E-09 1.4E-13 79.8 3.9 48 280-328 2-53 (55)
103 4gmo_A Putative uncharacterize 98.7 4.5E-08 1.6E-12 113.3 13.8 193 477-675 34-257 (684)
104 1bor_A Transcription factor PM 98.7 2.9E-09 9.8E-14 80.9 2.4 46 281-330 4-49 (56)
105 2l0b_A E3 ubiquitin-protein li 98.7 7.5E-09 2.6E-13 87.2 4.9 50 280-330 37-89 (91)
106 4ap4_A E3 ubiquitin ligase RNF 98.7 3.3E-09 1.1E-13 96.0 2.6 55 281-336 5-66 (133)
107 1x4j_A Ring finger protein 38; 98.7 9.2E-09 3.1E-13 83.2 4.0 50 280-330 20-72 (75)
108 2vgl_B AP-2 complex subunit be 98.7 2E-07 6.7E-12 106.2 15.3 261 395-678 50-313 (591)
109 1v87_A Deltex protein 2; ring- 98.6 2.5E-08 8.5E-13 87.8 5.2 49 282-330 24-94 (114)
110 4ic3_A E3 ubiquitin-protein li 98.6 1.3E-08 4.5E-13 82.0 1.5 46 280-330 21-67 (74)
111 2y1n_A E3 ubiquitin-protein li 98.5 4.4E-08 1.5E-12 102.9 5.1 49 283-331 332-380 (389)
112 3b2a_A TON_1937, putative unch 98.5 2.2E-06 7.4E-11 82.7 15.8 221 393-626 32-255 (265)
113 1qgr_A Protein (importin beta 98.5 4.4E-06 1.5E-10 99.1 22.4 275 394-679 128-440 (876)
114 4ap4_A E3 ubiquitin ligase RNF 98.5 3E-08 1E-12 89.7 1.5 55 281-336 70-131 (133)
115 2bpt_A Importin beta-1 subunit 98.5 7.3E-07 2.5E-11 105.6 13.8 271 394-676 369-668 (861)
116 1w63_A Adapter-related protein 98.4 7.6E-06 2.6E-10 93.5 20.6 255 392-676 140-414 (618)
117 2ecg_A Baculoviral IAP repeat- 98.4 9.7E-08 3.3E-12 77.1 2.3 45 281-330 23-68 (75)
118 2ecl_A Ring-box protein 2; RNF 98.4 1.7E-07 5.9E-12 76.8 3.8 48 282-330 14-76 (81)
119 1qgr_A Protein (importin beta 98.4 1E-05 3.4E-10 96.0 19.8 274 394-677 172-480 (876)
120 1wim_A KIAA0161 protein; ring 98.3 9.1E-08 3.1E-12 81.0 1.4 66 282-348 4-83 (94)
121 1w63_A Adapter-related protein 98.3 3E-05 1E-09 88.6 22.2 255 396-676 72-379 (618)
122 2vje_A E3 ubiquitin-protein li 98.3 3.3E-07 1.1E-11 71.4 3.7 48 281-329 6-56 (64)
123 2bpt_A Importin beta-1 subunit 98.3 1.2E-05 4E-10 95.2 18.9 274 394-677 134-441 (861)
124 1u6g_C TIP120 protein, CAND1; 98.3 5.5E-07 1.9E-11 111.4 6.6 271 394-678 6-286 (1230)
125 2vje_B MDM4 protein; proto-onc 98.3 4.7E-07 1.6E-11 70.3 3.4 46 283-329 7-55 (63)
126 1ibr_B P95, importin beta-1 su 98.2 4.7E-06 1.6E-10 90.9 12.6 265 396-677 3-289 (462)
127 2qk2_A LP04448P; mini spindles 98.2 2.5E-05 8.4E-10 77.9 16.6 182 398-590 19-205 (242)
128 3dpl_R Ring-box protein 1; ubi 98.2 9.3E-07 3.2E-11 76.1 4.5 46 282-328 36-99 (106)
129 2ea5_A Cell growth regulator w 98.1 2.3E-06 7.9E-11 67.4 5.1 46 280-330 12-58 (68)
130 2yho_A E3 ubiquitin-protein li 98.1 4.7E-07 1.6E-11 73.7 0.8 45 281-330 16-61 (79)
131 1u6g_C TIP120 protein, CAND1; 98.1 9.7E-06 3.3E-10 100.2 12.4 229 394-635 48-287 (1230)
132 2qk2_A LP04448P; mini spindles 98.1 1.6E-05 5.6E-10 79.2 11.0 183 481-676 19-205 (242)
133 3t6p_A Baculoviral IAP repeat- 98.0 8.3E-07 2.8E-11 92.9 1.2 46 280-330 292-338 (345)
134 3b2a_A TON_1937, putative unch 98.0 0.00029 9.9E-09 68.1 18.1 223 437-676 34-261 (265)
135 1te4_A Conserved protein MTH18 98.0 1.3E-06 4.6E-11 78.4 1.8 120 435-587 11-130 (131)
136 2vgl_A Adaptor protein complex 97.9 0.00047 1.6E-08 78.6 21.7 256 392-674 144-431 (621)
137 2qk1_A Protein STU2; STU2P, XM 97.9 2.4E-05 8.1E-10 78.6 9.0 188 400-590 22-220 (249)
138 1te4_A Conserved protein MTH18 97.9 1.2E-06 4.1E-11 78.8 -0.6 120 394-547 12-131 (131)
139 2vgl_A Adaptor protein complex 97.9 0.0005 1.7E-08 78.3 20.6 254 394-675 111-397 (621)
140 2d8s_A Cellular modulator of i 97.8 2.2E-05 7.6E-10 63.8 5.5 51 280-330 12-70 (80)
141 4a0k_B E3 ubiquitin-protein li 97.8 3.1E-06 1.1E-10 73.9 0.2 45 283-328 48-110 (117)
142 2iw3_A Elongation factor 3A; a 97.7 0.0015 5.1E-08 77.1 21.7 263 394-678 54-326 (986)
143 3dad_A FH1/FH2 domain-containi 97.7 0.00089 3E-08 68.6 15.8 177 395-572 119-316 (339)
144 2qk1_A Protein STU2; STU2P, XM 97.6 0.00054 1.9E-08 68.6 13.6 190 482-676 21-220 (249)
145 4ady_A RPN2, 26S proteasome re 97.6 0.0044 1.5E-07 72.4 22.4 237 395-677 430-677 (963)
146 1ho8_A Vacuolar ATP synthase s 97.5 0.00076 2.6E-08 72.5 13.3 232 398-633 171-477 (480)
147 3dad_A FH1/FH2 domain-containi 97.4 0.0026 8.9E-08 65.2 15.4 152 524-675 122-285 (339)
148 2db0_A 253AA long hypothetical 97.4 0.047 1.6E-06 50.7 21.6 214 393-632 31-246 (253)
149 3tjz_B Coatomer subunit gamma; 97.3 0.0044 1.5E-07 65.0 15.4 245 396-677 70-317 (355)
150 2ct0_A Non-SMC element 1 homol 97.2 0.00068 2.3E-08 53.8 6.5 48 282-329 14-63 (74)
151 3tjz_B Coatomer subunit gamma; 97.1 0.0036 1.2E-07 65.7 13.1 238 394-667 104-344 (355)
152 2db0_A 253AA long hypothetical 97.1 0.019 6.4E-07 53.4 16.0 214 436-676 32-246 (253)
153 1ho8_A Vacuolar ATP synthase s 97.1 0.051 1.8E-06 58.5 21.4 197 394-591 77-302 (480)
154 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0087 3E-07 64.8 13.7 244 395-672 175-432 (800)
155 2iw3_A Elongation factor 3A; a 96.9 0.044 1.5E-06 64.7 20.5 220 395-630 96-322 (986)
156 3vk6_A E3 ubiquitin-protein li 96.7 0.0011 3.8E-08 54.8 3.8 45 285-329 3-48 (101)
157 4ady_A RPN2, 26S proteasome re 96.6 0.27 9.3E-06 57.5 24.0 240 395-674 473-717 (963)
158 4ffb_C Protein STU2; tubulin f 96.6 0.032 1.1E-06 56.4 14.5 184 399-590 14-212 (278)
159 1vyx_A ORF K3, K3RING; zinc-bi 96.5 0.0026 8.9E-08 48.3 4.5 47 283-329 6-58 (60)
160 3k1l_B Fancl; UBC, ring, RWD, 96.0 0.0012 4.3E-08 67.2 0.5 48 282-329 307-372 (381)
161 2of3_A ZYG-9; multifunctional 96.0 0.074 2.5E-06 53.1 13.1 180 397-590 49-236 (266)
162 2fv2_A RCD1 required for cell 95.5 0.12 3.9E-06 50.8 11.8 146 411-558 73-233 (268)
163 1wa5_C Importin alpha RE-expor 95.2 0.48 1.7E-05 56.5 19.0 256 409-676 376-670 (960)
164 2fv2_A RCD1 required for cell 95.1 0.19 6.5E-06 49.3 11.9 175 495-673 73-265 (268)
165 4ffb_C Protein STU2; tubulin f 94.8 0.11 3.8E-06 52.3 10.2 187 482-677 14-213 (278)
166 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.015 5.3E-07 49.1 2.8 34 282-315 2-38 (101)
167 3ebb_A Phospholipase A2-activa 94.3 0.26 8.9E-06 50.3 11.4 183 395-580 104-296 (304)
168 1upk_A MO25 protein; transfera 93.9 6.3 0.00022 40.2 23.6 241 432-679 74-335 (341)
169 1upk_A MO25 protein; transfera 93.5 1.6 5.6E-05 44.5 15.3 217 394-614 78-308 (341)
170 3i2d_A E3 SUMO-protein ligase 93.4 0.05 1.7E-06 56.4 4.1 66 281-346 247-316 (371)
171 2of3_A ZYG-9; multifunctional 93.3 0.7 2.4E-05 46.0 12.2 187 440-642 50-246 (266)
172 2x19_B Importin-13; nuclear tr 92.8 4.2 0.00014 48.2 20.4 133 446-590 459-599 (963)
173 2x1g_F Cadmus; transport prote 92.7 1.1 3.9E-05 53.2 15.3 213 448-677 476-723 (971)
174 2f31_A Diaphanous protein homo 92.4 3.6 0.00012 40.0 15.8 163 413-577 20-215 (233)
175 1wa5_C Importin alpha RE-expor 92.4 5.1 0.00017 47.6 20.3 218 405-631 416-669 (960)
176 4fo9_A E3 SUMO-protein ligase 92.3 0.11 3.8E-06 53.6 4.8 66 280-345 212-281 (360)
177 3ebb_A Phospholipase A2-activa 92.1 0.73 2.5E-05 47.0 10.7 136 533-673 161-303 (304)
178 3eg5_B Protein diaphanous homo 92.0 6.6 0.00023 41.3 18.4 171 398-572 70-275 (383)
179 3nw0_A Non-structural maintena 91.9 0.12 4.1E-06 50.8 4.4 49 283-331 180-230 (238)
180 2x1g_F Cadmus; transport prote 91.7 3.6 0.00012 48.8 17.9 132 491-633 477-616 (971)
181 3u0r_A Apoptosis inhibitor 5; 89.9 8.5 0.00029 41.2 16.4 122 405-546 39-160 (507)
182 1lrv_A LRV, leucine-rich repea 89.4 0.6 2.1E-05 46.0 6.8 172 425-669 63-239 (244)
183 2bnx_A Diaphanous protein homo 89.2 16 0.00054 38.4 18.2 162 414-577 25-219 (386)
184 2f31_A Diaphanous protein homo 88.3 7.7 0.00026 37.6 14.0 128 492-621 68-217 (233)
185 4hat_C Exportin-1; heat repeat 87.6 1.4 4.8E-05 52.8 9.7 140 490-635 465-621 (1023)
186 2x19_B Importin-13; nuclear tr 86.4 7.4 0.00025 46.0 15.2 168 491-674 462-644 (963)
187 3c2g_A SYS-1 protein; beta-cat 85.6 14 0.00047 37.8 13.9 109 460-571 266-377 (619)
188 3oc3_A Helicase MOT1, MOT1; re 84.9 0.6 2E-05 50.9 4.0 185 410-627 244-431 (800)
189 3eg5_B Protein diaphanous homo 84.6 16 0.00054 38.3 15.0 146 470-618 103-280 (383)
190 3c2g_A SYS-1 protein; beta-cat 84.6 6.3 0.00021 40.3 10.9 118 411-531 260-378 (619)
191 4hat_C Exportin-1; heat repeat 83.8 6.4 0.00022 47.1 12.8 144 406-553 465-622 (1023)
192 1weo_A Cellulose synthase, cat 83.1 4.4 0.00015 32.5 7.3 48 282-329 15-69 (93)
193 1lrv_A LRV, leucine-rich repea 83.0 0.89 3E-05 44.8 4.2 42 399-458 79-120 (244)
194 3ibv_A Exportin-T; karyopherin 80.2 34 0.0012 40.6 17.2 210 407-635 21-263 (980)
195 1vdy_A Hypothetical protein (R 79.8 3.5 0.00012 36.6 6.4 77 605-681 51-135 (140)
196 3m1i_C Exportin-1; heat repeat 78.8 43 0.0015 40.0 17.8 218 396-633 18-264 (1049)
197 1lsh_A Lipovitellin (LV-1N, LV 75.9 45 0.0015 39.9 16.7 169 438-636 393-580 (1056)
198 2bnx_A Diaphanous protein homo 75.1 29 0.00098 36.4 13.1 126 407-534 71-217 (386)
199 3u0r_A Apoptosis inhibitor 5; 74.3 17 0.00059 38.9 10.9 122 448-588 40-161 (507)
200 3gjx_A Exportin-1; transport, 74.3 23 0.00077 42.5 13.3 218 395-633 29-276 (1073)
201 2cs3_A Protein C14ORF4, MY039 73.0 5.5 0.00019 31.2 4.9 45 279-323 11-63 (93)
202 2ko5_A Ring finger protein Z; 71.9 1.7 5.9E-05 35.2 2.0 50 280-331 25-74 (99)
203 1mhq_A ADP-ribosylation factor 70.5 11 0.00038 33.7 7.4 72 393-464 37-115 (148)
204 1x5b_A Signal transducing adap 70.4 9.1 0.00031 34.9 6.9 71 394-464 52-124 (163)
205 3a6p_A Exportin-5; exportin-5, 69.8 38 0.0013 41.2 14.3 210 407-634 26-278 (1204)
206 3ibv_A Exportin-T; karyopherin 68.9 1.1E+02 0.0037 36.3 17.6 196 397-599 43-272 (980)
207 3l9t_A Putative uncharacterize 68.1 58 0.002 31.4 12.2 140 439-600 74-218 (240)
208 3l9t_A Putative uncharacterize 65.0 35 0.0012 33.0 10.0 131 401-552 78-210 (240)
209 3m1i_C Exportin-1; heat repeat 64.7 28 0.00095 41.6 11.6 142 406-551 465-620 (1049)
210 1juq_A ADP-ribosylation factor 64.2 12 0.0004 34.4 6.3 72 393-464 49-127 (171)
211 3qml_C Protein SLS1, nucleotid 64.2 52 0.0018 33.0 11.3 135 449-589 41-188 (315)
212 3ldz_A STAM-1, signal transduc 63.5 13 0.00043 33.0 6.2 71 394-464 42-113 (140)
213 1lsh_A Lipovitellin (LV-1N, LV 60.7 72 0.0025 38.2 14.0 131 394-552 440-579 (1056)
214 3gae_A Protein DOA1; UFD3, CDC 59.6 18 0.00061 35.5 7.1 133 410-552 70-220 (253)
215 3mjh_B Early endosome antigen 59.3 2.1 7.2E-05 28.0 0.2 16 282-297 4-19 (34)
216 3pst_A Protein DOA1; protein d 57.4 28 0.00095 36.8 8.4 132 411-552 243-392 (425)
217 3ldz_A STAM-1, signal transduc 57.0 24 0.00081 31.2 6.8 71 605-676 44-114 (140)
218 2o35_A Hypothetical protein DU 56.6 4.3 0.00015 33.2 1.6 13 304-316 42-54 (105)
219 3fyb_A Protein of unknown func 55.8 4.5 0.00015 33.0 1.6 13 304-316 41-53 (104)
220 3g2s_A C-terminal fragment of 54.5 31 0.0011 30.8 7.2 71 394-464 48-125 (149)
221 3l3f_X Protein DOA1, DOA1/UFD3 51.8 35 0.0012 35.2 8.0 131 411-551 180-328 (362)
222 1x5b_A Signal transducing adap 51.2 40 0.0014 30.6 7.5 71 605-676 54-125 (163)
223 2yru_A Steroid receptor RNA ac 51.1 26 0.0009 29.9 5.8 71 10-86 4-74 (118)
224 3gjx_A Exportin-1; transport, 50.9 77 0.0026 37.9 11.9 139 490-634 491-646 (1073)
225 3zyq_A Hepatocyte growth facto 50.6 30 0.001 33.2 7.0 71 437-507 46-118 (226)
226 1m3v_A FLIN4, fusion of the LI 47.4 11 0.00037 32.4 2.9 50 282-332 31-83 (122)
227 2jne_A Hypothetical protein YF 47.2 0.87 3E-05 37.2 -3.9 40 284-329 33-72 (101)
228 1mhq_A ADP-ribosylation factor 46.0 33 0.0011 30.5 5.9 71 605-676 40-116 (148)
229 1juq_A ADP-ribosylation factor 44.4 40 0.0014 30.8 6.4 71 605-676 52-128 (171)
230 2jvx_A NF-kappa-B essential mo 44.1 6.3 0.00022 24.5 0.6 15 282-296 2-16 (28)
231 3qml_C Protein SLS1, nucleotid 43.2 1.9E+02 0.0067 28.9 11.4 143 399-548 27-188 (315)
232 3g2s_A C-terminal fragment of 43.1 47 0.0016 29.6 6.5 71 605-676 50-126 (149)
233 1dvp_A HRS, hepatocyte growth 41.8 22 0.00075 34.0 4.4 70 437-506 43-114 (220)
234 4abx_A DNA repair protein RECN 39.1 2.2E+02 0.0075 25.7 15.5 74 46-124 8-83 (175)
235 1elk_A Target of MYB1; superhe 38.4 63 0.0022 29.0 6.6 71 394-464 53-129 (157)
236 2xqn_T Testin, TESS; metal-bin 37.2 20 0.0007 30.6 3.0 47 281-330 28-75 (126)
237 6rxn_A Rubredoxin; electron tr 36.5 11 0.00037 26.5 0.8 14 278-291 25-38 (46)
238 3zyq_A Hepatocyte growth facto 36.5 57 0.002 31.2 6.4 71 605-676 47-118 (226)
239 1dvp_A HRS, hepatocyte growth 35.2 60 0.0021 30.8 6.3 71 605-676 44-115 (220)
240 2jrp_A Putative cytoplasmic pr 33.4 2.4 8.4E-05 33.6 -3.2 40 284-329 3-42 (81)
241 1e8j_A Rubredoxin; iron-sulfur 32.7 16 0.00054 26.3 1.3 15 277-291 30-44 (52)
242 3gs3_A Symplekin, LD45768P; he 32.6 1.9E+02 0.0063 28.2 9.4 106 478-589 54-172 (257)
243 3gae_A Protein DOA1; UFD3, CDC 32.2 37 0.0013 33.2 4.3 111 404-517 100-227 (253)
244 2xjy_A Rhombotin-2; oncoprotei 32.2 27 0.00093 30.0 3.0 49 281-330 27-78 (131)
245 2kkx_A Uncharacterized protein 32.0 68 0.0023 26.3 5.0 53 277-330 21-79 (102)
246 4rxn_A Rubredoxin; electron tr 32.0 14 0.00048 26.9 0.8 15 277-291 30-44 (54)
247 4e9m_A Nucleotide-binding olig 31.1 29 0.00098 30.5 2.8 87 39-131 27-117 (144)
248 1rut_X Flinc4, fusion protein 29.8 15 0.00052 34.1 1.0 49 281-330 30-81 (188)
249 2kn9_A Rubredoxin; metalloprot 28.4 20 0.00068 28.4 1.2 15 277-291 54-68 (81)
250 1yk4_A Rubredoxin, RD; electro 27.8 18 0.00062 26.0 0.8 15 277-291 29-43 (52)
251 2fiy_A Protein FDHE homolog; F 27.4 5.5 0.00019 40.4 -2.8 46 281-327 180-231 (309)
252 2kw6_A Cyclin-dependent kinase 27.2 21 0.00072 26.6 1.1 39 54-95 15-56 (65)
253 2v3b_B Rubredoxin 2, rubredoxi 27.1 18 0.00063 26.3 0.8 15 277-291 30-44 (55)
254 1x61_A Thyroid receptor intera 26.9 65 0.0022 24.1 4.1 35 282-316 32-67 (72)
255 2k5c_A Uncharacterized protein 26.9 9.5 0.00033 29.8 -0.8 55 283-337 8-70 (95)
256 3ttc_A HYPF, transcriptional r 25.5 28 0.00097 39.0 2.3 52 277-328 11-99 (657)
257 1dx8_A Rubredoxin; electron tr 25.0 22 0.00074 27.4 0.8 14 278-291 35-48 (70)
258 2lv2_A Insulinoma-associated p 24.6 81 0.0028 24.9 4.3 40 280-330 25-68 (85)
259 4atg_A TAF6; transcription, TF 24.6 1.7E+02 0.0058 27.2 7.1 110 437-547 41-160 (196)
260 1x62_A C-terminal LIM domain p 24.5 73 0.0025 24.5 4.0 41 280-329 12-52 (79)
261 3gs3_A Symplekin, LD45768P; he 24.3 4.9E+02 0.017 25.1 11.5 130 493-630 30-171 (257)
262 2rgt_A Fusion of LIM/homeobox 24.2 71 0.0024 28.8 4.5 46 281-329 31-76 (169)
263 3vhs_A ATPase wrnip1; zinc fin 23.7 19 0.00065 21.5 0.2 12 283-294 6-17 (29)
264 2ee8_A Protein ODD-skipped-rel 23.7 1.7E+02 0.0057 23.1 6.4 17 279-295 13-29 (106)
265 3o2t_A Symplekin; heat repeat, 23.6 6.2E+02 0.021 26.1 13.2 65 477-547 63-127 (386)
266 2jtn_A LIM domain-binding prot 23.3 59 0.002 29.8 3.8 46 282-330 86-131 (182)
267 2nz7_A NOD1, caspase recruitme 23.2 62 0.0021 26.6 3.4 77 41-127 15-92 (98)
268 2eps_A POZ-, at HOOK-, and zin 23.1 1.6E+02 0.0054 20.1 5.4 38 281-329 10-52 (54)
269 1sz9_A PCF11 protein; RNA poly 22.9 3E+02 0.01 24.1 8.1 71 605-677 45-115 (144)
270 3lay_A Zinc resistance-associa 22.9 2.8E+02 0.0096 25.2 8.1 56 132-196 66-121 (175)
271 4dzn_A Coiled-coil peptide CC- 22.1 71 0.0024 19.5 2.5 16 202-217 4-19 (33)
272 1s24_A Rubredoxin 2; electron 21.8 27 0.00093 28.0 0.9 14 278-291 63-76 (87)
273 2ct7_A Ring finger protein 31; 21.8 17 0.00057 29.1 -0.4 32 282-313 23-61 (86)
274 1wfh_A Zinc finger (AN1-like) 21.6 1.1E+02 0.0036 23.1 4.0 30 279-308 11-41 (64)
275 3vth_A Hydrogenase maturation 20.9 46 0.0016 38.1 2.9 52 277-328 105-193 (761)
276 1vfy_A Phosphatidylinositol-3- 20.9 53 0.0018 25.2 2.4 28 283-310 11-42 (73)
277 2cup_A Skeletal muscle LIM-pro 20.8 32 0.0011 28.0 1.2 46 281-329 31-77 (101)
278 1elk_A Target of MYB1; superhe 20.6 1.7E+02 0.0057 26.1 6.1 71 605-676 55-130 (157)
279 3o2t_A Symplekin; heat repeat, 20.3 5.4E+02 0.018 26.6 10.6 172 409-590 40-256 (386)
280 2d8x_A Protein pinch; LIM doma 20.1 70 0.0024 23.8 3.0 36 281-316 29-65 (70)
281 2lri_C Autoimmune regulator; Z 20.1 70 0.0024 24.1 2.9 44 282-327 11-59 (66)
No 1
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=3.9e-29 Score=277.20 Aligned_cols=280 Identities=20% Similarity=0.235 Sum_probs=242.2
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 472 (686)
..++.|+..|.++++++|..|++.|++++.+++.++..+++.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3578999999999999999999999999988888898999999999999999999999999999999999987 778999
Q ss_pred HHhcCcHHHHHHHHc-CCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc--------cC--------ChH
Q 046850 473 IMAAGAIDSIIEVLQ-SGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR--------EG--------TTA 535 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~-~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--------~~--------~~~ 535 (686)
|++.|++++|+++|. ++ +.++++.|+++|+||+..++++..++. |++|.|+++|. ++ ++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 999999999999999 77 899999999999999999889998876 99999999993 22 356
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHc-CcHHHHHHHhcC------CCchhHHHHHHHHHHHhCC-----------------
Q 046850 536 GKKDAATALFNLAVYNANKASVVVA-GAVPLLIELLMD------DKAGITDDALAVLALLLGC----------------- 591 (686)
Q Consensus 536 ~~~~Al~aL~nLs~~~~~~~~iv~~-G~v~~Ll~lL~~------~~~~v~~~al~~L~nLa~~----------------- 591 (686)
+.+.|+|+|+||+.+++++..+++. |++++|+.+|.+ .+..+++.|+.+|.||+..
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 6779999999999997799999998 999999999964 4667899999999999731
Q ss_pred ----------------------------------hhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccChH
Q 046850 592 ----------------------------------REGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGE 636 (686)
Q Consensus 592 ----------------------------------~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~ 636 (686)
+.+.+.+++.++ ++.|+.+|.+ .++.+++.|+++|+|||....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA-IRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcch-HHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 123334455566 8889998876 5789999999999999986533
Q ss_pred ---HHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 637 ---EVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 637 ---~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
...+.++...|++|.|+.++.++++++++.|.|+|+.+...
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 22244554489999999999999999999999999999764
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=4.1e-29 Score=266.28 Aligned_cols=265 Identities=20% Similarity=0.204 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccccc-cHHHHHh-
Q 046850 409 EIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-----------HDPRIQENAVTALLNLSIFDN-NKILIMA- 475 (686)
Q Consensus 409 ~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~~-~k~~i~~- 475 (686)
..+.+|+++|.+++. ++++|..|++.|+++.|+.+|.+ .++.++.+|+++|.||+.++. +|..+..
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 345589999999999 58999999999999999999953 246799999999999998775 5777765
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhhhHhhcCCCcHHHHHHhc-ccCChHHHHHHHHHHHHhcC-CC
Q 046850 476 AGAIDSIIEVLQSGKTMEARENAAATIFSLSMI--DDCKVMIGGRPRAIPALVGLL-REGTTAGKKDAATALFNLAV-YN 551 (686)
Q Consensus 476 ~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~-~~ 551 (686)
.|+++.|+.+|+++ +.++++.|+++|.||+.. ++++..+.+ .|+||.|+++| +++++.+++.|+++|+||+. ++
T Consensus 126 ~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 126 KGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 46799999999998 999999999999999985 468899998 99999999975 66788999999999999999 44
Q ss_pred CcHHHHH-HcCcHHHHHHHhcCCCc----hhHHHHHHHHHHHhC----ChhcHHHHHhCCCChHHHHHHHhcCChHHHHH
Q 046850 552 ANKASVV-VAGAVPLLIELLMDDKA----GITDDALAVLALLLG----CREGLEEIRKCRVLVPLLIDLLRFGSAKGKEN 622 (686)
Q Consensus 552 ~~~~~iv-~~G~v~~Ll~lL~~~~~----~v~~~al~~L~nLa~----~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~ 622 (686)
+++..++ ..|+++.|+++|.+++. .+++.|+++|.||+. ++++++.+.+.|+ +|.|+++|++++..++++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC-LQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH-HHHHHHHTTCSCHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCC-HHHHHHHHcCCChHHHHH
Confidence 6888888 78999999999976544 489999999999984 8899999999999 999999999999999999
Q ss_pred HHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhccc
Q 046850 623 SITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCCS 679 (686)
Q Consensus 623 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~~ 679 (686)
|+.+|++|+..+ ++.+..+.+ .|++|.|+.++.++++++++.|.++|..|....+
T Consensus 283 A~~aL~nLa~~~-~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 283 ACGTLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999754 667788888 9999999999999999999999999999987543
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=8e-28 Score=269.61 Aligned_cols=281 Identities=22% Similarity=0.238 Sum_probs=240.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc--cccHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF--DNNKI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~--~~~k~ 471 (686)
+.++.||..|.+++.++|..|+++|.+++..+.++|..+++.|+||.|+.+|++++..+++.|+++|.||+.+ ++||.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 5789999999999999999999999999998999999999999999999999999999999999999999984 68899
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc------------------cCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR------------------EGT 533 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~------------------~~~ 533 (686)
.|++.|+|++|+.+|+++.+.+++++|+++|+||+..++++..|+. +++|+|++++. ..+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccccccccccc
Confidence 9999999999999999854889999999999999999999999986 46999999872 124
Q ss_pred hHHHHHHHHHHHHhcCCCC-cHHHHHHc-CcHHHHHHHhcC------CCchhHHHHHHHHHHHhCChh------------
Q 046850 534 TAGKKDAATALFNLAVYNA-NKASVVVA-GAVPLLIELLMD------DKAGITDDALAVLALLLGCRE------------ 593 (686)
Q Consensus 534 ~~~~~~Al~aL~nLs~~~~-~~~~iv~~-G~v~~Ll~lL~~------~~~~v~~~al~~L~nLa~~~~------------ 593 (686)
+.++++|+++|.||+.+++ ++..+++. |++++|+.+|.+ .+...++.|+.+|+||+...+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 6899999999999999886 58888885 667899999953 467899999999999986421
Q ss_pred --------------cHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccChH--HHHHHHHcCCCChHHHHHHH
Q 046850 594 --------------GLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGE--EVARRLLINPRSIPSLQSLT 656 (686)
Q Consensus 594 --------------~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~--~~~~~l~~~~g~i~~L~~Ll 656 (686)
+...+.+.++ ++.|+.+|+. .++.++++|+.+|.|||..... ...+..+...|++|.|+.|+
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~-v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEV-VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp ----------CCCCGGGGGGSHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred cccccccccccCchhHHHHhcccH-HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 1222233344 6788888864 6899999999999999986532 12233443367899999999
Q ss_pred hcCCHHHHHHHHHHHHHHHhc
Q 046850 657 TDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 657 ~~~~~~~k~~A~~lL~~l~~~ 677 (686)
.++++.+++.|.++|+.|...
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVD 385 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999764
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=6.1e-28 Score=264.81 Aligned_cols=261 Identities=21% Similarity=0.209 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccccc-cHHHHHh-cCc
Q 046850 412 SQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-----------HDPRIQENAVTALLNLSIFDN-NKILIMA-AGA 478 (686)
Q Consensus 412 ~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~~-~k~~i~~-~g~ 478 (686)
.+|+++|.+++. ++++|..|++.|++++|+.+|.. .++.++.+|+++|.||+.+++ ++..+.. .|+
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 389999999987 68999999999999999999952 346789999999999998876 4666654 567
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhhhHhhcCCCcHHHHHHhc-ccCChHHHHHHHHHHHHhcC-CCCcH
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMI--DDCKVMIGGRPRAIPALVGLL-REGTTAGKKDAATALFNLAV-YNANK 554 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~-~~~~~ 554 (686)
++.|+.+|.++ +.++++.|+++|.||+.. ++++..+.+ .|+||.|+++| .++++.+++.|+.+|+||+. +++++
T Consensus 245 Ip~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 245 MRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 99999999998 999999999999999985 468899998 99999999975 56788999999999999999 66788
Q ss_pred HHHH-HcCcHHHHHHHhcCCCc----hhHHHHHHHHHHHh----CChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHH
Q 046850 555 ASVV-VAGAVPLLIELLMDDKA----GITDDALAVLALLL----GCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSIT 625 (686)
Q Consensus 555 ~~iv-~~G~v~~Ll~lL~~~~~----~v~~~al~~L~nLa----~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~ 625 (686)
..++ ..|+++.|+++|..++. .+++.|+++|+||+ .++++++.+.+.|+ +|.|+++|++++..++++|+.
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~-i~~Lv~LL~~~~~~v~~~A~~ 401 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC-LQTLLQHLKSHSLTIVSNACG 401 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHSSCSCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc-HHHHHHHHcCCChHHHHHHHH
Confidence 8888 78999999999976544 48999999999998 48899999999999 999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 626 LLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 626 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+|+||+..+ ++.+..+.+ .|++|.|+.++.++++++++.|.++|+.|....
T Consensus 402 aL~nLa~~~-~~~~~~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 402 TLWNLSARN-PKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHSSC-HHHHHHHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999754 677788887 899999999999999999999999999997654
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=3.5e-27 Score=265.24 Aligned_cols=280 Identities=20% Similarity=0.239 Sum_probs=251.3
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HH
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 471 (686)
|.|+.||+.|+ ++++++|..|+++|.+++.++++++..+++.|+||.|+.+|++++.++++.|+++|+||+.+... +.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 78999999998 45689999999999999999999999999999999999999999999999999999999988655 88
Q ss_pred HHHhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 472 LIMAAGAIDSIIEVLQSGK----TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
.+.+.|++++|+.+|..+. ....+.+++++|.+++........+....|++|.|+.++.+++++++..|+++|.+|
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L 259 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8999999999999998752 356788999999999998766555544478999999999999999999999999999
Q ss_pred cCCCCc-HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHH
Q 046850 548 AVYNAN-KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSIT 625 (686)
Q Consensus 548 s~~~~~-~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~ 625 (686)
+.++.+ ...++..|+++.|+.+|.+.+..++..++.+|+||+. ++..+..+++.|+ ++.|+.+|++.++.+++.|+.
T Consensus 260 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp TSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGCC-CTTCSSHHHHHHHHH
T ss_pred hhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccc-hHHHHHHhcCCCHHHHHHHHH
Confidence 998775 4556788999999999999999999999999999976 5666788899999 999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 626 LLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 626 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+|.||+.+. ......+.+ .|++|.|+.++.+++..+|+.|.|+|..+..
T Consensus 339 aL~nl~a~~-~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 339 TMSNITAGR-QDQIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHTTSC-HHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCc-HHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999876 667777777 8999999999999999999999999988765
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=8.9e-27 Score=263.22 Aligned_cols=280 Identities=20% Similarity=0.234 Sum_probs=252.4
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc-ccHH
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~ 471 (686)
|.|+.|++.|. +.++++|..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+++|+||+.++ .++.
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 78999999997 456999999999999999989999999999999999999999999999999999999999875 4599
Q ss_pred HHHhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 472 LIMAAGAIDSIIEVLQSGK----TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
.+.+.|++++|+.+|..+. ....+.+++++|.+++.+......+....|++|.|+.+|.+++++++.+|+|+|.+|
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999999999999998652 356788999999999998866555544478999999999999999999999999999
Q ss_pred cCCCCc-HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHH
Q 046850 548 AVYNAN-KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSIT 625 (686)
Q Consensus 548 s~~~~~-~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~ 625 (686)
+.++.+ ...++..|+++.|+.+|.+++..++..|+.+|+||+. ++..+..+++.|+ ++.|+.+|.++++.++..|++
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~-l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA-LAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTG-GGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhccc-HHHHHHHHcCCCHHHHHHHHH
Confidence 998874 5566788999999999999999999999999999986 5667888999999 999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 626 LLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 626 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+|.+|+.+. +.....+.+ .|++|.|+.++.+++..+++.|.|+|..+..
T Consensus 358 aL~nl~~~~-~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 358 TMSNITAGR-QDQIQQVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHTSC-HHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccc-HHHHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 999999876 667777777 8999999999999999999999999988754
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=5.1e-27 Score=271.39 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=248.4
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCc-----------------------------hhH---HHHHHhCCHHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGM-----------------------------DNR---RIIAEAGAIPF 440 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~-----------------------------~~r---~~i~~~g~i~~ 440 (686)
.+.++.|++.|++++..+|..|+++|.+++.+.+ .++ ..++++|++|.
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 4789999999999999999999999999998542 123 67889999999
Q ss_pred HHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc--C
Q 046850 441 LVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG--R 518 (686)
Q Consensus 441 Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~--~ 518 (686)
|+.+|+++++.+++.|+++|.||+.+.+++..+++.|++++|+.+|.++ +...++.|+++|.+|+...+....+.. .
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999888999999999999999999999 899999999999999876544433311 1
Q ss_pred CCcHHHHHHhcccCC-hHHHHHHHHHHHHhcCCC-CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHH
Q 046850 519 PRAIPALVGLLREGT-TAGKKDAATALFNLAVYN-ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLE 596 (686)
Q Consensus 519 ~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~~~-~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~ 596 (686)
.|++|+|+++|.++. ...+..|++||.||+..+ +++..+++.|+++.|+.+|.+++..++..|+.+|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 469999999998663 355678999999999986 589999999999999999999999999999999999999999888
Q ss_pred HHHh-CCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 597 EIRK-CRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 597 ~i~~-~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
.+.+ .|. ++.|+.++++.+..+++.|+++|.+|+..+ +...+.++...|+++.|+.++.+++..+|+.|.|+|..+.
T Consensus 659 ~~v~~~g~-l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 659 MFEGNNDR-VKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHSSSSH-HHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccCc-HHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8885 566 999999999999999999999999999854 5566777765789999999999999999999999998886
Q ss_pred h
Q 046850 676 R 676 (686)
Q Consensus 676 ~ 676 (686)
.
T Consensus 737 ~ 737 (810)
T 3now_A 737 N 737 (810)
T ss_dssp T
T ss_pred h
Confidence 5
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=5.6e-27 Score=259.88 Aligned_cols=278 Identities=20% Similarity=0.147 Sum_probs=239.0
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccccccHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
.+.++.|++.|+++++++|..|+++|++++.+++++|..+++.|+||.|+.+|+ ++++++++.|+++|.||+.++++|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 378999999999999999999999999999988999999999999999999999 8899999999999999999988899
Q ss_pred HHHhcCcHHHHHHHHc--------CC-------CCHHHHHHHHHHHHHhccCchhhhHhhcCC-CcHHHHHHhcccC---
Q 046850 472 LIMAAGAIDSIIEVLQ--------SG-------KTMEARENAAATIFSLSMIDDCKVMIGGRP-RAIPALVGLLREG--- 532 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~--------~~-------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~lL~~~--- 532 (686)
.+++ |++++|+.+|. ++ .+.++..+|+++|+||+..++++..+.+ . |+++.|+.+|.++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHHH
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhccc
Confidence 9999 99999999993 22 1345666999999999999888888888 6 9999999888631
Q ss_pred --------------------------------------------------------------------------------
Q 046850 533 -------------------------------------------------------------------------------- 532 (686)
Q Consensus 533 -------------------------------------------------------------------------------- 532 (686)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred ----------------ChHHHHHHHHHHHHhcCCCCcH-----HHHH-HcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 533 ----------------TTAGKKDAATALFNLAVYNANK-----ASVV-VAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 533 ----------------~~~~~~~Al~aL~nLs~~~~~~-----~~iv-~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
++.+++.|+|+|.||+..+... +.++ +.|++|.|+++|.+++..++..|+++|.||+.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 2355667899999999876432 2334 58999999999999999999999999999999
Q ss_pred ChhcHHHHHhCCCChHHHHHHHhcCC------hHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHH
Q 046850 591 CREGLEEIRKCRVLVPLLIDLLRFGS------AKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKA 663 (686)
Q Consensus 591 ~~~~~~~i~~~~~~i~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~ 663 (686)
++..+..|. .++ +|.|+++|..++ +++...++.+|.+++..+ ++....+.+ .|+++.|+.++.++ ++++
T Consensus 361 ~~~~~~~i~-~~~-i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~-~~~~~~i~~-~g~l~~L~~L~~~~~~~~i 436 (457)
T 1xm9_A 361 HPLLHRVMG-NQV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ-PQLAKQYFS-SSMLNNIINLCRSSASPKA 436 (457)
T ss_dssp SGGGHHHHH-HHT-HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC-THHHHHHCC-HHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHH-Hhh-hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHH-cCCHHHHHHHHcCCCcHHH
Confidence 887776665 477 999999998753 357789999999999776 456666666 89999999999999 9999
Q ss_pred HHHHHHHHHHHHh
Q 046850 664 RRKADALLRLLNR 676 (686)
Q Consensus 664 k~~A~~lL~~l~~ 676 (686)
+++|.++|..+..
T Consensus 437 ~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 437 AEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHc
Confidence 9999999987654
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=258.38 Aligned_cols=282 Identities=21% Similarity=0.197 Sum_probs=242.3
Q ss_pred hhhHHHHHHHhhc------------CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCH----------HHHHHhhcCCC-
Q 046850 393 KMTAEFLVGKLAM------------GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAI----------PFLVTLLSSHD- 449 (686)
Q Consensus 393 ~~~i~~Lv~~L~s------------~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i----------~~Lv~lL~s~~- 449 (686)
.|.++.||+.|+. ++++.|.+|+++|.+++.++++......+.|++ +.++.++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 4789999999995 347999999999999999999999988888888 66777776642
Q ss_pred -HH-----HHH-------HHHHHhhccccccccHHHHHhcCcHHHHHHHHcC----------CCCHHHHHHHHHHHHHhc
Q 046850 450 -PR-----IQE-------NAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQS----------GKTMEARENAAATIFSLS 506 (686)
Q Consensus 450 -~~-----~~~-------~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~----------~~~~e~~~~aa~~L~~Ls 506 (686)
.+ +++ +|+++|.|++.++++|..|++.|++++|+.+|.. ..+.+++.+|+++|.||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 22 444 9999999999999999999999999999999952 114678999999999999
Q ss_pred cCch-hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC--CCcHHHHHHcCcHHHHHHHh-cCCCchhHHHHH
Q 046850 507 MIDD-CKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY--NANKASVVVAGAVPLLIELL-MDDKAGITDDAL 582 (686)
Q Consensus 507 ~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~--~~~~~~iv~~G~v~~Ll~lL-~~~~~~v~~~al 582 (686)
..++ ++..+....|+||.|+.+|.+++++++..|+++|.||+.. +.++..+++.|++++|+++| .+.+..+++.|+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~ 308 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence 9876 6666654367799999999999999999999999999985 35889999999999999986 456788999999
Q ss_pred HHHHHHhC-ChhcHHHHH-hCCCChHHHHHHHhcCCh----HHHHHHHHHHHHhhcc--ChHHHHHHHHcCCCChHHHHH
Q 046850 583 AVLALLLG-CREGLEEIR-KCRVLVPLLIDLLRFGSA----KGKENSITLLLGLCKD--GGEEVARRLLINPRSIPSLQS 654 (686)
Q Consensus 583 ~~L~nLa~-~~~~~~~i~-~~~~~i~~Lv~lL~~~s~----~~ke~A~~~L~~L~~~--~~~~~~~~l~~~~g~i~~L~~ 654 (686)
.+|+||+. +++++..+. ..|+ +|.|+++|.++++ .+++.|+++|.+|+.. +.++.++.+.+ .|+++.|+.
T Consensus 309 ~aL~nLs~~~~~nk~~I~~~~Ga-l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~ 386 (458)
T 3nmz_A 309 SALWNLSAHCTENKADICAVDGA-LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHSTTH-HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHhcCc-HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHH
Confidence 99999998 778888888 6777 9999999987654 4899999999999972 33677788888 999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHh
Q 046850 655 LTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 655 Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
++.+++..+++.|.++|..+..
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHcCCChHHHHHHHHHHHHHHc
Confidence 9999999999999999999863
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=2.1e-27 Score=253.09 Aligned_cols=245 Identities=18% Similarity=0.167 Sum_probs=217.9
Q ss_pred hhHHHHHHHhhc-----------CCHHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhh
Q 046850 394 MTAEFLVGKLAM-----------GSPEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALL 461 (686)
Q Consensus 394 ~~i~~Lv~~L~s-----------~~~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~ 461 (686)
+.++.|+..|.+ .+++.|..|+++|.+++.++..+|..+.. .|+||.|+.+|+++++++++.|+++|.
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 678888888852 24678999999999999977779988865 566999999999999999999999999
Q ss_pred ccccc--cccHHHHHhcCcHHHHHHHH-cCCCCHHHHHHHHHHHHHhcc-CchhhhHhhcCCCcHHHHHHhcccCCh---
Q 046850 462 NLSIF--DNNKILIMAAGAIDSIIEVL-QSGKTMEARENAAATIFSLSM-IDDCKVMIGGRPRAIPALVGLLREGTT--- 534 (686)
Q Consensus 462 nLs~~--~~~k~~i~~~g~l~~Lv~lL-~~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~--- 534 (686)
||+.. +.+|..+.+.|++++|+++| +++ +.++++.|+++|+||+. .++++..++...|++|.|+++|.++++
T Consensus 153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 99985 46799999999999999985 556 88999999999999999 668898888449999999999987764
Q ss_pred -HHHHHHHHHHHHhcC----CCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHh-CChhcHHHHHhCCCChHHH
Q 046850 535 -AGKKDAATALFNLAV----YNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLL-GCREGLEEIRKCRVLVPLL 608 (686)
Q Consensus 535 -~~~~~Al~aL~nLs~----~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa-~~~~~~~~i~~~~~~i~~L 608 (686)
.+++.|+++|.||+. +++++..+++.|+++.|+++|.+++..+++.|+++|+||+ .+++.+..+++.|+ +|.|
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~-i~~L 310 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA-VSML 310 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH-HHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC-HHHH
Confidence 589999999999996 6679999999999999999999999999999999999999 57889999999999 9999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhccChHHHHH
Q 046850 609 IDLLRFGSAKGKENSITLLLGLCKDGGEEVAR 640 (686)
Q Consensus 609 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 640 (686)
+++++++++.+++.|+.+|.+|+.+.+..+.+
T Consensus 311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 311 KNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 99999999999999999999999987654443
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=5.9e-26 Score=254.49 Aligned_cols=280 Identities=21% Similarity=0.199 Sum_probs=233.5
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhh-CchhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhccccccccH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKT-GMDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDNNK 470 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~-~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~~k 470 (686)
.+.|+.||++|.+++.++|..|+++|++|+.+ +.++|..|++.|+||.|+.+|++ .+.+++++|+.+|+|||.++.+|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k 168 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhh
Confidence 37899999999999999999999999999985 68999999999999999999997 68899999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHc-----------------CCCCHHHHHHHHHHHHHhccCch-hhhHhhcCCCcHHHHHHhccc-
Q 046850 471 ILIMAAGAIDSIIEVLQ-----------------SGKTMEARENAAATIFSLSMIDD-CKVMIGGRPRAIPALVGLLRE- 531 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~-----------------~~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~- 531 (686)
..|++ +++++|++++. +..+.+++++|+++|+||+..++ ++..+.+..|+++.|+.++++
T Consensus 169 ~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99996 57999999872 11157899999999999998874 477777656777777776642
Q ss_pred -------------------------------------------------------------------------CChHHHH
Q 046850 532 -------------------------------------------------------------------------GTTAGKK 538 (686)
Q Consensus 532 -------------------------------------------------------------------------~~~~~~~ 538 (686)
.++.+++
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E 327 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILE 327 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred hcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHH
Confidence 1234455
Q ss_pred HHHHHHHHhcCCCC-----cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHh
Q 046850 539 DAATALFNLAVYNA-----NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLR 613 (686)
Q Consensus 539 ~Al~aL~nLs~~~~-----~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~ 613 (686)
.|++||.|||.... ++..+.+.|+++.|+++|.+++..+++.|+++|.||+.++..+..| ..++ +|.|+.+|.
T Consensus 328 ~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~-ip~LV~LL~ 405 (584)
T 3l6x_A 328 ASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHA-IPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHH-HHHHHHTSS
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCC-HHHHHHHhc
Confidence 66666666665431 2223344688999999999999999999999999999988888766 6688 999999998
Q ss_pred cC--------ChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHHHhc
Q 046850 614 FG--------SAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG--SLKARRKADALLRLLNRC 677 (686)
Q Consensus 614 ~~--------s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~~ 677 (686)
++ +..+...|+.+|.||+..+ ++..+.+.+ .|+++.|+.++.++ .+.+++.|.++|..|..+
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~-~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHH-TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 75 4678889999999999776 667788887 99999999999987 889999999999998653
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=1.5e-25 Score=259.16 Aligned_cols=280 Identities=19% Similarity=0.167 Sum_probs=250.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
|.++.|+..|.++++.+|.+|+++|.+++. +.++|..++++|++|+|+.+|.++++..++.|+++|.||+.+.+....+
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 789999999999999999999999999997 6789999999999999999999999999999999999998765443222
Q ss_pred ---HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC
Q 046850 474 ---MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV 549 (686)
Q Consensus 474 ---~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~ 549 (686)
...|++++|+.+|.++.+...+..|+++|.||+..+ +++..+.+ .|+++.|+.+|.++++.+++.|+++|+||+.
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 124699999999987645566778999999999885 68888888 8999999999999999999999999999999
Q ss_pred CCCcHHHHHH-cCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHh-CCCChHHHHHHHhcCChHHHHHHHHH
Q 046850 550 YNANKASVVV-AGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRK-CRVLVPLLIDLLRFGSAKGKENSITL 626 (686)
Q Consensus 550 ~~~~~~~iv~-~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~-~~~~i~~Lv~lL~~~s~~~ke~A~~~ 626 (686)
+++.+..++. .|+++.|+.++.+.+..++..|+++|+||+. ++...+.+++ .|+ ++.|+.++++++..++..|+.+
T Consensus 653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~-I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW-LDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH-HHHHHHHHTCSSHHHHHHHHHH
T ss_pred ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHCCCCHHHHHHHHHH
Confidence 9988888885 7999999999999999999999999999998 7888889998 777 9999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHcCCCChHHHHHHHhcC---CHHHHHHHHHHHHHHHhcc
Q 046850 627 LLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG---SLKARRKADALLRLLNRCC 678 (686)
Q Consensus 627 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~---~~~~k~~A~~lL~~l~~~~ 678 (686)
|.|++.++ .+....+.+ .|++++|+.+++.. +.++.+.|...|+.+-.+.
T Consensus 732 L~NL~~~s-~e~~~~l~e-~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 732 ILNMINAG-EEIAKKLFE-TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHTTC-HHHHHHHHT-STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-HHHHHHHHH-CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 99999865 667788888 99999999998654 6889999999999987653
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=1e-24 Score=246.09 Aligned_cols=280 Identities=22% Similarity=0.254 Sum_probs=252.9
Q ss_pred hhHHHHHHHhhcCC-HHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccc-cHH
Q 046850 394 MTAEFLVGKLAMGS-PEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN-NKI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~-~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~ 471 (686)
+.++.|++.|.+++ +++|..|+++|.+++.++++++..+++.|++|.|+.+|.++++.+++.|+++|.||+.+.. ++.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 68999999999876 9999999999999999889999999999999999999999999999999999999998754 488
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.+.+.|++++|+.+|....+..++..|+++|.+|+........... .|+++.|+.+|.++++.++..|+++|.+|+...
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8889999999999995444899999999999999988655455555 899999999999999999999999999999887
Q ss_pred CcH-HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcC-ChHHHHHHHHHHH
Q 046850 552 ANK-ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFG-SAKGKENSITLLL 628 (686)
Q Consensus 552 ~~~-~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~-s~~~ke~A~~~L~ 628 (686)
+.+ ..+++.|+++.|+.+|.+++..++..|+.+|++|+. .+.....+++.|+ ++.|+.+|.++ ++.++..|+.+|.
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQA-LPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhh-HHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 654 677889999999999999999999999999999997 5667778888888 99999999988 8999999999999
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+|+... ......++. .|++|.|+.++.++++.+++.|.++|..+...
T Consensus 355 nl~~~~-~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGN-KDQIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSC-HHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999864 666677777 89999999999999999999999999988664
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=8e-25 Score=247.22 Aligned_cols=281 Identities=20% Similarity=0.199 Sum_probs=252.6
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCC-----HHHHHHHHHHhhcccccc
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD-----PRIQENAVTALLNLSIFD 467 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~-----~~~~~~A~~aL~nLs~~~ 467 (686)
.|.|+.|+.+|.+++.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|...+ ..+...++++|.|++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 378999999999999999999999999999989999999999999999999998754 356789999999999887
Q ss_pred cc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh-HhhcCCCcHHHHHHhcccCChHHHHHHHHHHH
Q 046850 468 NN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV-MIGGRPRAIPALVGLLREGTTAGKKDAATALF 545 (686)
Q Consensus 468 ~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~ 545 (686)
.. .......|+++.|+.+|.++ +.+++..|+++|.+|+..+..+. .+.. .|+++.|+++|.++++.++..|+.+|+
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 65 34444568999999999999 99999999999999999886554 4555 999999999999999999999999999
Q ss_pred HhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHH
Q 046850 546 NLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENS 623 (686)
Q Consensus 546 nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A 623 (686)
||+..++ .+..+++.|+++.|+.+|.+++..++..|+++|.||+. ++..+..+.+.|+ +|.|+.++.+++..++..|
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~-i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH-HHHHHHHHHSSCHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCc-HHHHHHHhcCCCHHHHHHH
Confidence 9998765 77888999999999999999999999999999999986 5666788888888 9999999999999999999
Q ss_pred HHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 624 ITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 624 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+.+|.|++.++..+....+++ .|++++|+.++...+++++..+.+.|..+-..
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999998877888888888 99999999999999999999998888877554
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1e-24 Score=220.57 Aligned_cols=239 Identities=26% Similarity=0.312 Sum_probs=221.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 472 (686)
+.++.|++.|.++++++|..|++.|.+++..+++++..+++.|+++.|+.+|++++..++..|+++|.|++.+ +.++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3578999999999999999999999999998888999999999999999999999999999999999999998 566999
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc-cCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLS-MIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
+.+.|+++.|+.+|+++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|++++.++++.++..|+++|.||+..+
T Consensus 82 ~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998 9999999999999999 45578888888 999999999999999999999999999999876
Q ss_pred C-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 046850 552 A-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLG 629 (686)
Q Consensus 552 ~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~ 629 (686)
+ ++..+++.|+++.|+.+|.+++..++..|+.+|.+|+. ++..+..+.+.|+ ++.|+++++++++.+++.|+.+|.+
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG-VEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTH-HHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 6 56888999999999999999999999999999999997 6667888889898 9999999999999999999999999
Q ss_pred hhccCh
Q 046850 630 LCKDGG 635 (686)
Q Consensus 630 L~~~~~ 635 (686)
|+....
T Consensus 239 l~~~~~ 244 (252)
T 4hxt_A 239 IKSGGW 244 (252)
T ss_dssp HHHTCB
T ss_pred HHcCCC
Confidence 998653
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=1.1e-24 Score=244.94 Aligned_cols=281 Identities=20% Similarity=0.193 Sum_probs=251.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCC-----HHHHHHHHHHhhccccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD-----PRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~-----~~~~~~A~~aL~nLs~~~~ 468 (686)
|.|+.|+..|.+++.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|.+.+ ..++..++++|.|++.+..
T Consensus 143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 222 (510)
T 3ul1_B 143 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222 (510)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc
Confidence 68999999999999999999999999999988999999999999999999998755 3567899999999998876
Q ss_pred c-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 469 N-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 469 ~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
. .......|+++.|+.+|.++ +.+++..|+++|.+|+..+..+..+....|+++.|+.+|.+++..++..|+.+|+||
T Consensus 223 ~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 223 PAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 6 33444568999999999999 999999999999999988866554443399999999999999999999999999999
Q ss_pred cCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHH
Q 046850 548 AVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSIT 625 (686)
Q Consensus 548 s~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~ 625 (686)
+..++ ++..+++.|+++.|+.+|.+++..++..|+++|.||+. +++.+..+.+.|. +|.|+.++.+++..++..|+.
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~-i~~Lv~lL~~~~~~v~~~Aa~ 380 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL-VPFLVGVLSKADFKTQKEAAW 380 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHSSCHHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCC-HHHHHHHHcCCCHHHHHHHHH
Confidence 98776 77888999999999999999999999999999999986 6667888889888 999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 626 LLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 626 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+|.|++.++..+.+..+++ .|+++.|+.++...+++++..+.+.|..+-..
T Consensus 381 aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 381 AITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999877888888888 99999999999999999999999888777554
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=4.3e-25 Score=224.13 Aligned_cols=236 Identities=23% Similarity=0.267 Sum_probs=216.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKILI 473 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i 473 (686)
..+.+++.|.++++++|..|++.|+.+...+.+++..+.+.|++|.|+.+|.++++.++..|+++|.|++.+ ++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467889999999999999999999776655778899999999999999999999999999999999999984 5669999
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhh-hHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCK-VMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
.+.|+++.|+.+|+++ +.+++..|+++|.+|+..++++ ..+.. .|+++.|+++|.++++.++..|+++|.||+..++
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999998 9999999999999999999888 77777 9999999999999999999999999999998665
Q ss_pred -cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 553 -NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 553 -~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
++..+++.|+++.|+.+|.+++..++..|+.+|.+|+. +++.+..+.+.|+ ++.|+++++++++.+++.|+.+|.+|
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA-LEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc-HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999985 6777888899998 99999999999999999999999999
Q ss_pred hcc
Q 046850 631 CKD 633 (686)
Q Consensus 631 ~~~ 633 (686)
+.+
T Consensus 250 ~~~ 252 (252)
T 4db8_A 250 QSH 252 (252)
T ss_dssp C--
T ss_pred hcC
Confidence 853
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.6e-24 Score=215.76 Aligned_cols=245 Identities=22% Similarity=0.278 Sum_probs=222.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccccc-cHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhhh
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN-NKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-DDCKV 513 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~~~ 513 (686)
|+||.|+.+|.+++++++..|+++|.+++.... ++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+.. ++++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHH
Confidence 678999999999999999999999999998775 689999999999999999999 899999999999999998 67888
Q ss_pred HhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC-CCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-C
Q 046850 514 MIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV-YNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-C 591 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~-~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~ 591 (686)
.+.. .|+++.|+.+|.++++.++..|+++|.||+. .++++..+++.|+++.|+++|.+++..++..|+.+|++|+. .
T Consensus 81 ~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8888 9999999999999999999999999999995 45688999999999999999999999999999999999997 4
Q ss_pred hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 046850 592 REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALL 671 (686)
Q Consensus 592 ~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 671 (686)
+..+..+.+.|+ ++.|+.++.+.++.++..|+.+|.+|+... +.....+.+ .|+++.|+.++.++++.+++.|.++|
T Consensus 160 ~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 160 DEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp HHHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcC-HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 555678888888 999999999999999999999999999854 667777777 89999999999999999999999999
Q ss_pred HHHHhccccCCCCC
Q 046850 672 RLLNRCCSQSHNPV 685 (686)
Q Consensus 672 ~~l~~~~~~~~~~~ 685 (686)
..+.........++
T Consensus 237 ~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 237 ENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHTCBCCC---
T ss_pred HHHHcCCCcccccc
Confidence 99998876665544
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1.1e-23 Score=237.93 Aligned_cols=279 Identities=19% Similarity=0.167 Sum_probs=252.0
Q ss_pred hhHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc-ccHH
Q 046850 394 MTAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~ 471 (686)
+.++.|++.|.++ ++++|..|+++|.+++.++++++..+++.|++|.|+.+|.++++.+++.|+++|.||+.+. .++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 209 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence 6899999999987 8999999999999999988889999999999999999999999999999999999999875 4588
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.+...|+++.|+.+|.++ +.+++..|+++|.+|+... ........ .++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 210 ~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 210 YVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888999999999999997 9999999999999999876 44444455 78999999999999999999999999999987
Q ss_pred CC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 551 NA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 551 ~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
.+ ....+++.|+++.|+.+|.+++..++..|+.+|++|+. .+.....+++.|+ ++.|+.+|.++++.++..|+.+|.
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV-LPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch-HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 65 67778889999999999999899999999999999996 4566777888888 999999999999999999999999
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+|+... +.....++. .|+++.|+.++.++++.+++.|.++|..+...
T Consensus 367 ~l~~~~-~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 367 NITAGN-TEQIQAVID-ANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHTTSC-HHHHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999865 556677776 89999999999999999999999999988654
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.92 E-value=2.6e-23 Score=234.66 Aligned_cols=280 Identities=17% Similarity=0.172 Sum_probs=253.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccccccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL-SSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
+.++.|+..|.+++.+++..|+++|.+++.+++.++..+.+.|+++.|+.+| .+.+..++..|+++|.||+.+..+...
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 239 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF 239 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence 6899999999999999999999999999998888999999999999999999 678999999999999999988656555
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhh-hHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCK-VMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
....|+++.|+.+|.++ +.+++..|+++|.+|+.....+ ..+.. .|+++.|+.+|.++++.++..|+++|.||+...
T Consensus 240 ~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 317 (528)
T 4b8j_A 240 EQTRPALPALARLIHSN-DEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD 317 (528)
T ss_dssp HHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC
Confidence 56689999999999998 9999999999999999887655 45556 899999999999999999999999999999866
Q ss_pred C-cHHHHHHcCcHHHHHHHhcCC-CchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 552 A-NKASVVVAGAVPLLIELLMDD-KAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 552 ~-~~~~iv~~G~v~~Ll~lL~~~-~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
+ ....+++.|+++.|+.+|.++ +..++..|+++|.||+. .++....+++.+. +|.|+.+|.++++.++..|+.+|.
T Consensus 318 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~-i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 318 DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI-IGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5 677788999999999999988 89999999999999986 5566778888888 999999999999999999999999
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+++..+.+.....+++ .|+++.|+.++.++++.++..|.++|..+-..
T Consensus 397 nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 397 NATSGGSHDQIKYLVS-EGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp HHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999866778888887 89999999999999999999999988887553
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=3.4e-23 Score=228.00 Aligned_cols=279 Identities=20% Similarity=0.201 Sum_probs=247.5
Q ss_pred hhHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccc-cHH
Q 046850 394 MTAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN-NKI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~-~k~ 471 (686)
+.++.|++.|.++ ++++|..|++.|.+++..+++++..+++.|++|.|+.+|+++++.+++.|+++|.+++.+.. ++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 89999999999999999778888888999999999999999999999999999999998764 588
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.+++.|+++.|+.++.+..+.+++..|+++|.+|+... ........ .+++|.|+.++.++++.++..|+++|.+|+.+
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996448999999999999999765 22222222 78999999999999999999999999999987
Q ss_pred C-CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC-hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 551 N-ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC-REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 551 ~-~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~-~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
. +++..++..|+++.|+.+|.+++..++..|+.+|.+|+.. +...+.+++.|+ ++.|+.++.+.++.++..|+.+|.
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA-LQSLLHLLSSPKESIKKEACWTIS 301 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH-HHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCcc-HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6 4677888899999999999988999999999999999975 444666788888 999999999999999999999999
Q ss_pred HhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 629 GLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 629 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+++... +.....+.+ .|+++.|+.++.++++.+|+.|.++|..+..
T Consensus 302 ~l~~~~-~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 302 NITAGN-RAQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHTTSC-HHHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCC-HHHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999865 556667777 7999999999999999999999999988854
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.91 E-value=1.1e-22 Score=229.79 Aligned_cols=282 Identities=21% Similarity=0.204 Sum_probs=253.1
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc-ccHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKI 471 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~ 471 (686)
.+.++.|+..|.+++.+++..|+++|.+++.+++.++..+...|+++.|+.+|.+.+..++..|+++|.+|+.+. ....
T Consensus 172 ~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 251 (530)
T 1wa5_B 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251 (530)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 368999999999999999999999999999988899999999999999999999999999999999999999876 5555
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY 550 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~ 550 (686)
.....|+++.|+.+|.++ +.+++..|+++|.+|+... +....+.. .|+++.|+.+|.++++.++..|+++|.||+..
T Consensus 252 ~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp HHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence 566789999999999998 8999999999999999875 45666666 89999999999999999999999999999987
Q ss_pred CC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHH
Q 046850 551 NA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLL 628 (686)
Q Consensus 551 ~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~ 628 (686)
.+ ....+++.|+++.|+.+|.+++..++..|+++|.+|+. +++....+++.++ +|.|+.+|..+++.++..|+.+|.
T Consensus 330 ~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~-l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 330 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL-IPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 65 56777889999999999999899999999999999986 5666777888888 999999999999999999999999
Q ss_pred HhhccChH--HHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 629 GLCKDGGE--EVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 629 ~L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+++..+.+ +....+.. .|+++.|+.++.+.++.++..|.++|..+-...
T Consensus 409 ~l~~~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 99987655 66777777 899999999999999999999999888776543
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=8.6e-23 Score=224.72 Aligned_cols=281 Identities=19% Similarity=0.160 Sum_probs=249.3
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhcccccc-cc-
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLSIFD-NN- 469 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~-~~- 469 (686)
.+.++.|++.|.+++++++..|++.|.+++.++++++..+.+.|+++.|+.++.+ .+..++..|+++|.||+.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 3689999999999999999999999999999888899999999999999999996 78999999999999999765 32
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhc
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLA 548 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs 548 (686)
+..++ .|+++.|+.++.++ +.+++..++++|.+|+... +....+.. .|+++.|+.+|.++++.++..|+++|.+|+
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNIV 262 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CHHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHHh
Confidence 33333 78999999999988 9999999999999999865 55666666 899999999999999999999999999999
Q ss_pred CCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHH
Q 046850 549 VYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITL 626 (686)
Q Consensus 549 ~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~ 626 (686)
...+ ....+++.|+++.|+++|.+++..++..|+.+|.+|+. +++..+.+++.+. +|.|+.++.++++.++..|+.+
T Consensus 263 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI-FPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH-HHHHHHHHHHSCHHHHHHHHHH
T ss_pred hCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC-HHHHHHHHhcCCHHHHHHHHHH
Confidence 8876 45567888999999999999899999999999999996 6677778888888 9999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 627 LLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 627 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
|.+++..+.+.....+.. .|+++.|+.++.++++++++.|.++|..+-...
T Consensus 342 L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999998755666677776 899999999999999999999999888776543
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=4.6e-23 Score=209.10 Aligned_cols=235 Identities=21% Similarity=0.271 Sum_probs=214.3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccc-cccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-Cchhhh
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLS-IFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSM-IDDCKV 513 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs-~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~ 513 (686)
...+.++.+|.++|++++..|+++|.++. .+++++..+++.|+++.|+.+|+++ +.+++..|+++|.+|+. .++++.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45889999999999999999999997754 4556688899999999999999999 89999999999999998 457888
Q ss_pred HhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcH-HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-C
Q 046850 514 MIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANK-ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-C 591 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~-~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~ 591 (686)
.+.. .|+++.|+.+|.++++.++..|+++|.||+.+++++ ..+++.|+++.|+++|.+++..++..|+.+|.+|+. .
T Consensus 91 ~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 8888 899999999999999999999999999999999988 889999999999999999999999999999999997 5
Q ss_pred hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 046850 592 REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALL 671 (686)
Q Consensus 592 ~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 671 (686)
++.+..+.+.|+ ++.|++++.++++.+++.|+.+|.+|+..+ +.....+.+ .|+++.|+.++.++++.+++.|.++|
T Consensus 170 ~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 170 NEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHHHHHTTC-HHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred hHHHHHHHHCCC-HHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566777888888 999999999999999999999999999765 566677777 89999999999999999999999999
Q ss_pred HHHH
Q 046850 672 RLLN 675 (686)
Q Consensus 672 ~~l~ 675 (686)
..+.
T Consensus 247 ~~l~ 250 (252)
T 4db8_A 247 EKLQ 250 (252)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8764
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=9.5e-23 Score=203.06 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=175.7
Q ss_pred hhhHHHHHHHhhcCCH--HHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-ccc
Q 046850 393 KMTAEFLVGKLAMGSP--EIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNN 469 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~--~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~ 469 (686)
...++.||+.|.++++ ++|..|++.|++++..++.+|..+++.|+||.|+.+|+++++++++.|+++|.||+.+ ++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 3678999999999988 8999999999999998999999999999999999999999999999999999999985 678
Q ss_pred HHHHHhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc---c-------------C
Q 046850 470 KILIMAAGAIDSIIEVLQS-GKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR---E-------------G 532 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~-------------~ 532 (686)
|..|.+.|++++|+++|.+ + +.+++++|+++|+||+..++++..|.. . ++|+|++++. + .
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~-~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMIT-E-ALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHH-H-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHh-c-cHHHHHHHHhccccCCcccccccccccc
Confidence 9999999999999999984 6 899999999999999999999999986 4 7999998763 1 2
Q ss_pred ChHHHHHHHHHHHHhcCCC-CcHHHHHHc-CcHHHHHHHhcC------CCchhHHHHHHHHHHHhC
Q 046850 533 TTAGKKDAATALFNLAVYN-ANKASVVVA-GAVPLLIELLMD------DKAGITDDALAVLALLLG 590 (686)
Q Consensus 533 ~~~~~~~Al~aL~nLs~~~-~~~~~iv~~-G~v~~Ll~lL~~------~~~~v~~~al~~L~nLa~ 590 (686)
++.++.+|.++|+||+..+ ++|..|.+. |+|+.|+.++.. .+...++.|+.+|.||+.
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 5689999999999999865 799999986 778999999943 366889999999999985
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=1e-21 Score=220.87 Aligned_cols=279 Identities=17% Similarity=0.138 Sum_probs=247.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 472 (686)
+.++.|++.|+++++++|..|++.|.+++.+++.++..+.+.|++|.|+.+|.+++.+++..++.+|.+++.. ++++..
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999999999999999999999999998888999999999999999999999999999999999999985 466888
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
+.+.|+++.|+.+|+++.....+..++.+|.+|+..++++..+.. .|+++.|++++.++++.++..++++|.||+...+
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 999999999999999886777888899999999999999999998 8999999999999999999999999999998765
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC-hhcHHHHHhCCCChHHHHHHHhc--CChHHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC-REGLEEIRKCRVLVPLLIDLLRF--GSAKGKENSITLLLG 629 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~-~~~~~~i~~~~~~i~~Lv~lL~~--~s~~~ke~A~~~L~~ 629 (686)
... ...|+++.|+++|.+.++.++..|+.+|++|+.. ++.+..+.+.|+ ++.|++++.. .++.+++.|+.+|.+
T Consensus 260 ~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~-v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 260 KQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG-IEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 322 2247899999999999999999999999999875 568999999998 9999999976 347899999999999
Q ss_pred hhccChH--HHHHHHHcCCCChHHHHHHHhcCC-HHHHHHHHHHHHHHHhc
Q 046850 630 LCKDGGE--EVARRLLINPRSIPSLQSLTTDGS-LKARRKADALLRLLNRC 677 (686)
Q Consensus 630 L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~~~-~~~k~~A~~lL~~l~~~ 677 (686)
|+.+.+. ..+..+.. .|+++.|+.++.+++ +..++.|.|+|..+...
T Consensus 337 l~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCchHHHHHHHHHH-cCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 9986432 34566666 889999999999886 58999999999988653
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=7.4e-22 Score=222.08 Aligned_cols=275 Identities=20% Similarity=0.172 Sum_probs=243.0
Q ss_pred hhHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HH
Q 046850 394 MTAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 471 (686)
+.++.|++.|.++ +++++..|+..|++++. +++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.++++ +.
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 137 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH
Confidence 6789999999865 89999999999999998 567999999999999999999999999999999999999988544 77
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhhhHhhcCCCcHHHHHHhcccCCh-HHHHHHHHHHHHhcC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-DDCKVMIGGRPRAIPALVGLLREGTT-AGKKDAATALFNLAV 549 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~Al~aL~nLs~ 549 (686)
.+.+.|+++.|+++|.++ +.+++..++.+|.+|+.. ++++..+.. .|+++.|+++|+++++ ..+..++.+|.||+.
T Consensus 138 ~i~~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 888999999999999998 899999999999999985 578888888 8999999999988765 567778999999999
Q ss_pred CCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 046850 550 YNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLG 629 (686)
Q Consensus 550 ~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~ 629 (686)
+++++..+++.|+++.|+.++.+++..++..++++|.+|+....... ...+. +|.|++++++.++.+++.|+.+|.+
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGL-LGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHH-HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhH-HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999997543322 12245 8999999999999999999999999
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTTDG--SLKARRKADALLRLLNR 676 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~--~~~~k~~A~~lL~~l~~ 676 (686)
|+.++ ++.+..+.+ .|+++.|+.++.+. ++.++..|.++|..+..
T Consensus 293 L~~~~-~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 293 LTCNN-YKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HTTTC-HHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HhcCC-HHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 99875 566677777 89999999999863 47899999999998854
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=224.48 Aligned_cols=275 Identities=20% Similarity=0.177 Sum_probs=242.8
Q ss_pred hhHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HH
Q 046850 394 MTAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 471 (686)
+.++.|++.|.++ +.+++..|+..|+.++. +.+++..+.+.|++|.|+.+|+++++.++..|+++|.||+.+.+. +.
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 5789999999865 89999999999999998 567999999999999999999999999999999999999988544 77
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhhhHhhcCCCcHHHHHHhcccCC-hHHHHHHHHHHHHhcC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSM-IDDCKVMIGGRPRAIPALVGLLREGT-TAGKKDAATALFNLAV 549 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~Al~aL~nLs~ 549 (686)
.+.+.|+++.|+.+|+++ +.+.+..++.+|.+|+. .++++..+.. .|+++.|+++|++++ ...+..++.+|+||+.
T Consensus 135 ~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 788899999999999998 88888889999999997 5688889988 899999999998875 4778899999999999
Q ss_pred CCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHH
Q 046850 550 YNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLG 629 (686)
Q Consensus 550 ~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~ 629 (686)
++.++..+++.|+++.|+.++.+.+..++..++.+|.+|+....... ...+. ++.|++++++.++.+++.|+.+|.+
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~-i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGL-LGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC--SCHHH-HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh--hhhhH-HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999997432211 11245 8999999999999999999999999
Q ss_pred hhccChHHHHHHHHcCCCChHHHHHHHhcC-C-HHHHHHHHHHHHHHHh
Q 046850 630 LCKDGGEEVARRLLINPRSIPSLQSLTTDG-S-LKARRKADALLRLLNR 676 (686)
Q Consensus 630 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~-~~~k~~A~~lL~~l~~ 676 (686)
|+.++ +..+..+.+ .|+++.|+.++.+. + +.++..|.++|..+..
T Consensus 290 L~~~~-~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 290 LTCNN-YKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHTTC-HHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHcCC-HHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 99875 556677777 88999999999874 3 7899999999998853
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=4.5e-21 Score=221.75 Aligned_cols=279 Identities=18% Similarity=0.146 Sum_probs=245.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccc-ccccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSI-FDNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~-~~~~k~~ 472 (686)
+.++.|++.|+++++.+|..|++.|.+++..+...+..+.+.|++|.|+.+|+++++.++..++.+|.+|+. +++++..
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 688999999999999999999999999999888889999999999999999999999999999999999997 5667999
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
+.+.|+++.|+.+|+++.....+..++.+|.+|+..++++..+.. .|+++.|+.++.+++..++..++++|.||+....
T Consensus 178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 999999999999999886678899999999999999999999998 8999999999999999999999999999997654
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC-hhcHHHHHhCCCChHHHHHHHhc-C-ChHHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC-REGLEEIRKCRVLVPLLIDLLRF-G-SAKGKENSITLLLG 629 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~-~~~~~~i~~~~~~i~~Lv~lL~~-~-s~~~ke~A~~~L~~ 629 (686)
.. ....|+++.|+++|.+.+..+++.|+.+|.+|+.. ++.+..+.+.|+ ++.|++++.. + .+.+++.|+.+|.+
T Consensus 257 ~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~-v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 257 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG-IEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp TC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC-HHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 32 12247899999999999999999999999999974 577888999998 9999999986 3 37999999999999
Q ss_pred hhccChH--HHHHHHHcCCCChHHHHHHHhcCC-HHHHHHHHHHHHHHHhc
Q 046850 630 LCKDGGE--EVARRLLINPRSIPSLQSLTTDGS-LKARRKADALLRLLNRC 677 (686)
Q Consensus 630 L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~~~-~~~k~~A~~lL~~l~~~ 677 (686)
|+...+. .....+.. .|+++.|+.++.+.+ +.+++.|.++|..+...
T Consensus 334 L~~~~~~~~~~q~~v~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 334 LTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HTSSSTTHHHHHHHHHH-TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HhcCCchHHHHHHHHHH-ccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 9975432 23334555 889999999999885 68999999999988653
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=198.01 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=173.3
Q ss_pred CHHHHHHhhcCCCH--HHHHHHHHHhhccccc-cccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhh
Q 046850 437 AIPFLVTLLSSHDP--RIQENAVTALLNLSIF-DNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-DDCK 512 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~--~~~~~A~~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~~ 512 (686)
.+|.++.+|+++++ +++..|+++|.+|+.. ++++..+.+.|+|++|+++|+++ +.++++.|+++|.||+.. ++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999988 8999999999999965 56799999999999999999998 999999999999999984 6899
Q ss_pred hHhhcCCCcHHHHHHhcc-cCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc----------------CCCc
Q 046850 513 VMIGGRPRAIPALVGLLR-EGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLM----------------DDKA 575 (686)
Q Consensus 513 ~~i~~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~----------------~~~~ 575 (686)
..|.+ .|+||+|+++|. +++.++++.|+.+|+||+..+.++..+++. ++++|++++. ..+.
T Consensus 88 ~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99999 999999999998 578999999999999999999999999875 6999998762 0245
Q ss_pred hhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcC------ChHHHHHHHHHHHHhhcc
Q 046850 576 GITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFG------SAKGKENSITLLLGLCKD 633 (686)
Q Consensus 576 ~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~ 633 (686)
.+++.|..+|.||+. ++++|+.|.+.+++|+.|+.+++.+ +...+|+|+.+|.|||..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 899999999999987 6799999999877689999999872 557999999999999975
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-21 Score=219.92 Aligned_cols=286 Identities=16% Similarity=0.192 Sum_probs=238.0
Q ss_pred hhhHHHHHHHhhc-CCHHHHHHHHHHHHHHHhhCch--------------------------------------hHHHHH
Q 046850 393 KMTAEFLVGKLAM-GSPEIQSQAAYELRLLAKTGMD--------------------------------------NRRIIA 433 (686)
Q Consensus 393 ~~~i~~Lv~~L~s-~~~~~q~~al~~L~~La~~~~~--------------------------------------~r~~i~ 433 (686)
.+.++.|++.+++ .+......++..|.+++...+. ++..+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 4678888888884 6667788888888888763221 567788
Q ss_pred HhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHH---HHHHHHHHHHHhccCch
Q 046850 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTME---ARENAAATIFSLSMIDD 510 (686)
Q Consensus 434 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e---~~~~aa~~L~~Ls~~~~ 510 (686)
++|+||.|+.+++++++.+++.|+++|.||+.+.++|..++++|++++|+.+|.++ +.. .+..|+.+|.+|+...+
T Consensus 455 eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSC
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999998 433 89999999999997766
Q ss_pred hhhHhh--cCCCcHHHHHHhccc--CCh------------HHHHHHHHHHHHhcCCCCc-----HHHHHHc-CcHHHHHH
Q 046850 511 CKVMIG--GRPRAIPALVGLLRE--GTT------------AGKKDAATALFNLAVYNAN-----KASVVVA-GAVPLLIE 568 (686)
Q Consensus 511 ~~~~i~--~~~g~i~~Lv~lL~~--~~~------------~~~~~Al~aL~nLs~~~~~-----~~~iv~~-G~v~~Ll~ 568 (686)
+...+. ...|+|++|+++|.. +.. .-+..|+.||.||+..++| +.+++.. |+++.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 666553 224999999999983 211 2277999999999999843 7889995 99999999
Q ss_pred HhcCCCchhHHHHHHHHHHHhCChhcH-HHHHhCC------CChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHH
Q 046850 569 LLMDDKAGITDDALAVLALLLGCREGL-EEIRKCR------VLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARR 641 (686)
Q Consensus 569 lL~~~~~~v~~~al~~L~nLa~~~~~~-~~i~~~~------~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~ 641 (686)
+|.+++..++..|+.++.||+.++++. +.+.+.+ . ++.|+.++++++.+.|.+|+++|.++++.. +..+..
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r-L~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ 691 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN-FNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKE 691 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH-HHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc-HHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHH
Confidence 999989999999999999999988875 3454332 3 678999999999999999999999997654 566677
Q ss_pred HHcCCCChHHHHHHHhc--CCHHHHHHHHHHHHHHHhccccC
Q 046850 642 LLINPRSIPSLQSLTTD--GSLKARRKADALLRLLNRCCSQS 681 (686)
Q Consensus 642 l~~~~g~i~~L~~Ll~~--~~~~~k~~A~~lL~~l~~~~~~~ 681 (686)
+.+..++++.++.++++ +++.++..+..++..|-...++.
T Consensus 692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~ 733 (778)
T 3opb_A 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDN 733 (778)
T ss_dssp HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCST
T ss_pred HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccC
Confidence 77744789999999999 89999999999999998765443
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=3.9e-21 Score=189.34 Aligned_cols=195 Identities=26% Similarity=0.275 Sum_probs=180.2
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 472 (686)
+..+.|+.+|.+.++++|..|++.|.+++..+++++..+.+.|++|.|+.+|.++++.++..|+++|.|++.+ +.++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 5678899999999999999999999999988899999999999999999999999999999999999999965 456889
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
+++.|+++.|+.+|+++ +..++..|+++|.||+..+ +.+..+.. .|+++.|++++.++++.++..|+++|.||+...
T Consensus 92 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 92 VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999 9999999999999999765 45566777 999999999999999999999999999999984
Q ss_pred -CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 552 -ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 552 -~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
+++..+++.|+++.|++++.+++..+++.|+.+|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 588888999999999999999999999999999999985
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=6.1e-21 Score=187.96 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=178.9
Q ss_pred HhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chh
Q 046850 434 EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI-DDC 511 (686)
Q Consensus 434 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~ 511 (686)
..|..+.|+.+|+++|+.++..|+++|.+++.. ++++..+.+.|+++.|+.+|+++ +.+++..|+++|.+|+.. +++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 357899999999999999999999999999955 45588999999999999999999 999999999999999964 467
Q ss_pred hhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 512 KVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 512 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
+..+.. .|+++.|+.+|.++++.++..|+++|.||+...+ .+..+++.|+++.|+++|.+++..++..|+.+|.||+.
T Consensus 89 ~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 888888 9999999999999999999999999999998665 66788899999999999999999999999999999998
Q ss_pred C-hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 591 C-REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 591 ~-~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
. ++.+..+.+.|+ ++.|++++.++++.+++.|+.+|.+|+.+
T Consensus 168 ~~~~~~~~~~~~g~-i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 168 GGNEQKQAVKEAGA-LEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp SCHHHHHHHHHTTH-HHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred CCcHHHHHHHHCCC-HHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 6 778888999998 99999999999999999999999999853
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=2.6e-20 Score=219.41 Aligned_cols=277 Identities=22% Similarity=0.242 Sum_probs=241.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccc-ccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFD-NNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~-~~k~~ 472 (686)
+.++.|+..|.+++.+.+..|++.|.+++...... ....++++.|+.+|.++++.+++.|+++|.+|+... .++..
T Consensus 360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~ 436 (780)
T 2z6g_A 360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436 (780)
T ss_dssp THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 67899999999999999999999999999754321 123568999999999999999999999999999875 45888
Q ss_pred HHhcCcHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCch----hhhHhhcCCCcHHHHHHhcccCCh-HHHHHHHHHHHH
Q 046850 473 IMAAGAIDSIIEVLQSG-KTMEARENAAATIFSLSMIDD----CKVMIGGRPRAIPALVGLLREGTT-AGKKDAATALFN 546 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~-~~~e~~~~aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~Al~aL~n 546 (686)
+.+.|+++.|+.+|.+. ...+++..|+++|.+|+..+. .+..+.. .|+++.|+.+|.+++. .+++.|+++|.|
T Consensus 437 i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~-~~~l~~L~~lL~~~~~~~v~~~A~~aL~n 515 (780)
T 2z6g_A 437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRN 515 (780)
T ss_dssp HHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-cCCHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 88999999999999863 245899999999999987542 2456666 8999999999998875 999999999999
Q ss_pred hcCCCCcHHHHHHcCcHHHHHHHhcCCC----------------------chhHHHHHHHHHHHhCChhcHHHHHhCCCC
Q 046850 547 LAVYNANKASVVVAGAVPLLIELLMDDK----------------------AGITDDALAVLALLLGCREGLEEIRKCRVL 604 (686)
Q Consensus 547 Ls~~~~~~~~iv~~G~v~~Ll~lL~~~~----------------------~~v~~~al~~L~nLa~~~~~~~~i~~~~~~ 604 (686)
|+.++.++..+++.|+++.|+++|.+.+ ..+++.++.+|++|+.++..+..+.+.|+
T Consensus 516 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~- 594 (780)
T 2z6g_A 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT- 594 (780)
T ss_dssp HHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC-
T ss_pred HhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCc-
Confidence 9998889989999999999999995421 34678899999999999999999999999
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
++.|+++|.++++.++..|+.+|.+|+.+ +..+..+.+ .|+++.|+.++.+.++.+|+.|.++|..+....
T Consensus 595 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~-~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 595 IPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEA-EGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999865 667777777 999999999999999999999999998887643
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.85 E-value=4.7e-20 Score=217.28 Aligned_cols=278 Identities=17% Similarity=0.134 Sum_probs=244.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc-cccHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF-DNNKIL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~-~~~k~~ 472 (686)
+.++.|++.|++++..+|..|+++|.+++..+...+..+.+.|+++.|+.+|.+++..++..|+.+|.+++.. ++++..
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6899999999999999999999999999998888999999999999999999999999999999999999974 566889
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
+.+.|+++.|+.+|+++.....+..++.+|.+|+..+.++..+.. .|+++.|+.++.+++..++..|+++|.+|+....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 999999999999999885667788999999999998899999998 9999999999999999999999999999998664
Q ss_pred cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC-hhcHHHHHhCCCChHHHHHHHhc-CC-hHHHHHHHHHHHH
Q 046850 553 NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC-REGLEEIRKCRVLVPLLIDLLRF-GS-AKGKENSITLLLG 629 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~-~~~~~~i~~~~~~i~~Lv~lL~~-~s-~~~ke~A~~~L~~ 629 (686)
.. ....++++.|+++|.+.+..+++.|+.+|.+|+.. ++.+..+.+.|+ ++.|+++|.. ++ +.+++.|+.+|.+
T Consensus 393 ~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~v~~~Al~aL~n 469 (780)
T 2z6g_A 393 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG-IEALVRTVLRAGDREDITEPAICALRH 469 (780)
T ss_dssp TC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC-HHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 31 12257899999999999999999999999999875 567888899898 9999999976 33 4899999999999
Q ss_pred hhccChH--HHHHHHHcCCCChHHHHHHHhcCCH-HHHHHHHHHHHHHHh
Q 046850 630 LCKDGGE--EVARRLLINPRSIPSLQSLTTDGSL-KARRKADALLRLLNR 676 (686)
Q Consensus 630 L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~~~~-~~k~~A~~lL~~l~~ 676 (686)
|+....+ .....+.. .|+++.|+.++.+++. .+++.|.++|..+..
T Consensus 470 L~~~~~~~~~~~~~v~~-~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 470 LTSRHQDAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHhcCchHHHHHHHHHH-cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 9975433 23345555 8899999999998864 999999999998864
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=4.1e-19 Score=184.23 Aligned_cols=235 Identities=18% Similarity=0.154 Sum_probs=188.6
Q ss_pred hHHHHHHHhhcC------------CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHH-hhcCCCHHHHHHHHHHhh
Q 046850 395 TAEFLVGKLAMG------------SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVT-LLSSHDPRIQENAVTALL 461 (686)
Q Consensus 395 ~i~~Lv~~L~s~------------~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~~~~~A~~aL~ 461 (686)
.++..+..|.++ +.+.+..|+..|..+.. +.++...+...|++|.|+. +|.++++.+++.|+++|+
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345556666653 34678899999999998 6778889999999999999 999999999999999999
Q ss_pred cccccccc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hhhHhhcCCCcHHHHHHhcccCChHHHHH
Q 046850 462 NLSIFDNN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-CKVMIGGRPRAIPALVGLLREGTTAGKKD 539 (686)
Q Consensus 462 nLs~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 539 (686)
|++.+++. +..+++.|++++|+.+|+++.+.+++..|+++|.||+.+.. ....+.. .|+++.|+.+|++++..++..
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~ 186 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVK 186 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHH
Confidence 99987654 88899999999999999965478999999999999998764 4566777 899999999999999999999
Q ss_pred HHHHHHHhcCCC-CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCCh-hcHHHHHhC-CCChHHHH----HHH
Q 046850 540 AATALFNLAVYN-ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCR-EGLEEIRKC-RVLVPLLI----DLL 612 (686)
Q Consensus 540 Al~aL~nLs~~~-~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~-~~~~~i~~~-~~~i~~Lv----~lL 612 (686)
|+|+|.||+..+ +.+..+++.|++++|+.+|.+++..+++.|+.+|.+|+... ......... .. +..++ +-+
T Consensus 187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~-l~~lL~~~~~~l 265 (296)
T 1xqr_A 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG-LEELLRHRCQLL 265 (296)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHH-HHHHHHHHHHHc
Confidence 999999999764 48899999999999999999999999999999999999862 222222221 12 22222 223
Q ss_pred hcC--ChHHHHHHHHHHHHhhc
Q 046850 613 RFG--SAKGKENSITLLLGLCK 632 (686)
Q Consensus 613 ~~~--s~~~ke~A~~~L~~L~~ 632 (686)
+.. ..+..++|..++-++..
T Consensus 266 q~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 266 QQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp TTCGGGHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHHHHcC
Confidence 322 34566777777665553
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=7.3e-19 Score=199.71 Aligned_cols=276 Identities=13% Similarity=0.148 Sum_probs=227.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHh-CCHHHHHHhhcC-CCHHHHHHHHHHhhccccccc----
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEA-GAIPFLVTLLSS-HDPRIQENAVTALLNLSIFDN---- 468 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~-g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs~~~~---- 468 (686)
.++.+++.|.+++.+.+..|++.|..++. +++.|+.+++. |+++.|+.++++ ++..+...++.+|.||+.+.+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 66788888888777779999999999998 78999999884 779999999995 788899999999999986322
Q ss_pred -----------------------------------cHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhh
Q 046850 469 -----------------------------------NKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKV 513 (686)
Q Consensus 469 -----------------------------------~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~ 513 (686)
++..+.++|+++.|+.+++++ +..+++.|+++|.||+.+.++|.
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~ 492 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIP 492 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 345667889999999999999 99999999999999999999999
Q ss_pred HhhcCCCcHHHHHHhcccCChH---HHHHHHHHHHHhcCCCCcHHHHHH---cCcHHHHHHHhcC-CCc-----------
Q 046850 514 MIGGRPRAIPALVGLLREGTTA---GKKDAATALFNLAVYNANKASVVV---AGAVPLLIELLMD-DKA----------- 575 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~~~---~~~~Al~aL~nLs~~~~~~~~iv~---~G~v~~Ll~lL~~-~~~----------- 575 (686)
.+.. .|++++|+++|.+++.. ++..|+.||.+|+...+....+-. .|++++|+.+|.. +..
T Consensus 493 ~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 493 QLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999 99999999999988654 899999999999965543322211 3899999999972 211
Q ss_pred --hhHHHHHHHHHHHhCCh-----hcHHHHHhC-CCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHH-HHHHcCC
Q 046850 576 --GITDDALAVLALLLGCR-----EGLEEIRKC-RVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVA-RRLLINP 646 (686)
Q Consensus 576 --~v~~~al~~L~nLa~~~-----~~~~~i~~~-~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~-~~l~~~~ 646 (686)
.-+..|+.+|.|||..+ +.+..|+.. |+ +|.|..++.+.++.++.+|+.+++||+.+ +..+ +.+....
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga-~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~ 648 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY-WSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAKFFNLE 648 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH-HHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCS
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH-HHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhc
Confidence 12678999999999876 347888886 88 99999999999999999999999999986 3332 2332211
Q ss_pred -----CChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 647 -----RSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 647 -----g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+-++.|+.|+..++...|+.|.++|.++..
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 127799999999999999999999999853
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=1.4e-17 Score=172.71 Aligned_cols=183 Identities=19% Similarity=0.132 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCcHHHHH
Q 046850 449 DPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIE-VLQSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRAIPALV 526 (686)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~-lL~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv 526 (686)
+.+.+..|+..|.+++.+.++...+.+.|++++|+. +|.++ +.+++..|+++|.+++.++ .++..+.. .|++|+|+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHH
Confidence 346778899999999998888888999999999999 99998 9999999999999999876 57777888 89999999
Q ss_pred HhcccC-ChHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCC
Q 046850 527 GLLREG-TTAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRV 603 (686)
Q Consensus 527 ~lL~~~-~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~ 603 (686)
.+|+++ ++.+++.|+|||.||+.+.+ ....+++.|+++.|+.+|.+++..++..|+++|.+|+. +++.+..+++.|+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~ 210 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 999864 78999999999999998765 67788899999999999999999999999999999986 5778899999999
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 046850 604 LVPLLIDLLRFGSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 604 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 634 (686)
++.|+.+|.+.++.+++.|+.+|.+|+...
T Consensus 211 -i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 211 -VQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp -HHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999885
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.75 E-value=8.9e-19 Score=146.22 Aligned_cols=74 Identities=34% Similarity=0.508 Sum_probs=69.5
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNN 351 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~ 351 (686)
...+|++|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|++.+....+.||..++++|+.|+.+++
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999999996 7899999999998899999999999999998865
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.74 E-value=2.7e-18 Score=147.01 Aligned_cols=77 Identities=32% Similarity=0.455 Sum_probs=71.9
Q ss_pred CCCCCCCCcccccCcccCcCceEccCc-ccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCCC
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVASG-HTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNVP 353 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~cg-ht~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 353 (686)
....+|++|.||||+++|+|||+++|| |+|||.||.+|+.. +.+||.|++++....+.||..++++|+.|+.+++..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 345789999999999999999999999 99999999999986 789999999999899999999999999999998864
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.74 E-value=2e-18 Score=148.39 Aligned_cols=76 Identities=33% Similarity=0.477 Sum_probs=70.7
Q ss_pred CCCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCC
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNV 352 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 352 (686)
....+|++|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|++++....+.||..++++|+.|+.+|+-
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 34578999999999999999999999999999999999985 78999999999999999999999999999998763
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.74 E-value=3e-18 Score=161.68 Aligned_cols=76 Identities=36% Similarity=0.548 Sum_probs=71.0
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCCCC
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNVPL 354 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~ 354 (686)
.+|++|.||||+++|.|||+++|||+|||.||.+|+..+..+||.|+.++....+.||..++++|+.|+..||+..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 6789999999999999999999999999999999998754589999999998899999999999999999999853
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.71 E-value=7.7e-18 Score=138.64 Aligned_cols=75 Identities=57% Similarity=1.228 Sum_probs=71.1
Q ss_pred CCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCC
Q 046850 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNV 352 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 352 (686)
..++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.|++.+....+.||..++++|+.|..++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999999999999988789999999999888999999999999999999987
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=9.7e-16 Score=158.22 Aligned_cols=78 Identities=33% Similarity=0.527 Sum_probs=72.5
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCCCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNVPL 354 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~~~ 354 (686)
...+|++|.||||+++|.|||+++||||||+.||.+|+..+..+||.|+.++....+.||..++++|+.|+.++++..
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 457789999999999999999999999999999999999866679999999988899999999999999999998753
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=133.44 Aligned_cols=74 Identities=26% Similarity=0.518 Sum_probs=65.1
Q ss_pred CCCCCcccccCcccCcCceEcc-CcccccHHhHHHHHhhC-----CCCCCC--CCcc-ccCCCCCCcHHHHHHHHHHHHh
Q 046850 279 NIPDEFRCPISLDLMRDPVIVA-SGHTYDRNSIAQWINSG-----HHTCPK--SGQR-LIHMALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~-cght~cr~ci~~w~~~~-----~~~CP~--c~~~-l~~~~l~~n~~l~~~i~~~~~~ 349 (686)
..+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||. |+.. +....+.||..++++|+.|+.+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3467899999999999999995 99999999999999863 469999 5555 8788999999999999999988
Q ss_pred CCC
Q 046850 350 NNV 352 (686)
Q Consensus 350 ~~~ 352 (686)
++.
T Consensus 83 ~~r 85 (94)
T 2yu4_A 83 RHR 85 (94)
T ss_dssp CCS
T ss_pred hcc
Confidence 764
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=5.2e-15 Score=125.73 Aligned_cols=77 Identities=30% Similarity=0.468 Sum_probs=68.6
Q ss_pred CCCCCCCCcccccCcccCcCceEcc-CcccccHHhHHHHHhh-CCCCCCCCCccc-cCCCCCCcHHHHHHHHHHHHhCCC
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVA-SGHTYDRNSIAQWINS-GHHTCPKSGQRL-IHMALIPNYTLKSLLHQWCQDNNV 352 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~-cght~cr~ci~~w~~~-~~~~CP~c~~~l-~~~~l~~n~~l~~~i~~~~~~~~~ 352 (686)
....+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|++.+ ....+.+|..++++++.|...++.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 3457789999999999999999998 9999999999999976 457999999997 456899999999999999988665
No 47
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.7e-13 Score=135.02 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=64.3
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhh-CCCCCCC--CCccccCCCCCCcHHHHHHHHHHHHh
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINS-GHHTCPK--SGQRLIHMALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~-~~~~CP~--c~~~l~~~~l~~n~~l~~~i~~~~~~ 349 (686)
....+|+||||+++|+|||+. .|||+|||.||.+||.. +...||+ |++.+....+.||..|+++++.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 457899999999999999985 99999999999999986 4578999 99999888999999999999999664
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.46 E-value=2.4e-12 Score=142.88 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=215.7
Q ss_pred hhHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC--CCHHHHHHHHHHhhcccccccc-
Q 046850 394 MTAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS--HDPRIQENAVTALLNLSIFDNN- 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLs~~~~~- 469 (686)
.+|+.|+..+.+. -.+.++.|+..|+.+++. ++..++ .++++.|+..|+. .|.++...++.+|.++...++.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4789999999854 688999999999999873 455444 5679999999976 5889999999999886543221
Q ss_pred -----------------HHHHH-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhc
Q 046850 470 -----------------KILIM-AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLL 529 (686)
Q Consensus 470 -----------------k~~i~-~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL 529 (686)
.+.+. +.+.++.|+.+|++. +...|.+++..|..|+... .++..|....++|+.|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 11232 458899999999998 9999999999999998766 36788886589999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCcHHHHHHc-CcHHHHHHHhcCC----CchhHHHHHHHHHHHhC-ChhcHHHHHhCCC
Q 046850 530 REGTTAGKKDAATALFNLAVYNANKASVVVA-GAVPLLIELLMDD----KAGITDDALAVLALLLG-CREGLEEIRKCRV 603 (686)
Q Consensus 530 ~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~-G~v~~Ll~lL~~~----~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~ 603 (686)
.+....++..|+..|.+|+.++.+.++++.. |+++.|+.++..+ ...++..|+.+|.||.. ++.++..+.+.+.
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 9988999999999999999999988888876 9999999999653 34788999999999997 5557888888887
Q ss_pred ChHHHHHHHhcCCh---------HHHHHHHHHHHHhhccCh-----HHHHHHHHcCCCChHHHHHHHhcC--CHHHHHHH
Q 046850 604 LVPLLIDLLRFGSA---------KGKENSITLLLGLCKDGG-----EEVARRLLINPRSIPSLQSLTTDG--SLKARRKA 667 (686)
Q Consensus 604 ~i~~Lv~lL~~~s~---------~~ke~A~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~~~--~~~~k~~A 667 (686)
++.|..++..+.. .....++.++..|+..++ ......+.+ .|+++.|++++... ...++..|
T Consensus 256 -i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~A 333 (651)
T 3grl_A 256 -IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTET 333 (651)
T ss_dssp -GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred -HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHH
Confidence 9999999875322 122236777777777543 234455566 89999999988765 45677666
Q ss_pred HHHHHHHH
Q 046850 668 DALLRLLN 675 (686)
Q Consensus 668 ~~lL~~l~ 675 (686)
..++.-+.
T Consensus 334 l~tla~~i 341 (651)
T 3grl_A 334 INTVSEVI 341 (651)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=124.23 Aligned_cols=70 Identities=19% Similarity=0.369 Sum_probs=63.2
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccC-CCCCCcHHHHHHHHHHHHh
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH-MALIPNYTLKSLLHQWCQD 349 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~-~~l~~n~~l~~~i~~~~~~ 349 (686)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+..+.. ..+.+|..++++++.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 456789999999999999999999999999999999767799999999976 6799999999999988543
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=126.19 Aligned_cols=69 Identities=22% Similarity=0.414 Sum_probs=63.3
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCC-CCCCcHHHHHHHHHHHH
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM-ALIPNYTLKSLLHQWCQ 348 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~-~l~~n~~l~~~i~~~~~ 348 (686)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+..+... .+.+|..++++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999998677999999999877 89999999999998853
No 51
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.33 E-value=3.3e-13 Score=104.33 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=49.3
Q ss_pred CcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcH
Q 046850 283 EFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNY 337 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~ 337 (686)
.|.||||+++|.|||+. +|||+|||.||++|+.. +.+||.|++++...++.||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 58999999999999999 99999999999999987 56799999999988888875
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.33 E-value=1.3e-10 Score=129.03 Aligned_cols=278 Identities=14% Similarity=0.132 Sum_probs=209.5
Q ss_pred hhHHHHHHHhhc--CCHHHHHHHHHHHHHHHhhCch-----------------hHHHH-HHhCCHHHHHHhhcCCCHHHH
Q 046850 394 MTAEFLVGKLAM--GSPEIQSQAAYELRLLAKTGMD-----------------NRRII-AEAGAIPFLVTLLSSHDPRIQ 453 (686)
Q Consensus 394 ~~i~~Lv~~L~s--~~~~~q~~al~~L~~La~~~~~-----------------~r~~i-~~~g~i~~Lv~lL~s~~~~~~ 453 (686)
..++.|+..|+. .|.+....++..|.++...+.+ +...+ .+.+.|+.|+.+|.+++..++
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR 139 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVR 139 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHH
Confidence 568889999985 4788888899999877653332 11233 346889999999999999999
Q ss_pred HHHHHHhhcccccccc--HHHHHhc-CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc
Q 046850 454 ENAVTALLNLSIFDNN--KILIMAA-GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR 530 (686)
Q Consensus 454 ~~A~~aL~nLs~~~~~--k~~i~~~-g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 530 (686)
.+++.+|..|+.+... ++.|... ++++.|+.+|++. .+.+|-.++.+|.+|+..+..-..++.-.|+++.|++++.
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999987654 7778855 9999999999998 8999999999999999988665555443899999999998
Q ss_pred cCCh----HHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhcCCCch------hHHH---HHHHHHHHhCC-----
Q 046850 531 EGTT----AGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLMDDKAG------ITDD---ALAVLALLLGC----- 591 (686)
Q Consensus 531 ~~~~----~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~~~~~~------v~~~---al~~L~nLa~~----- 591 (686)
.+.. .+..+++.+|.||..++. |...+.+.|.++.|..+|..+... .... ++.++..|+..
T Consensus 219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~ 298 (651)
T 3grl_A 219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG 298 (651)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 6543 788999999999999886 888899999999999999643221 2233 66777777642
Q ss_pred --hhcHHHHHhCCCChHHHHHHHhcC--ChHHHHHHHHHHHHhhccChHHHHHHHHcCC----CChHHHHH----HHhcC
Q 046850 592 --REGLEEIRKCRVLVPLLIDLLRFG--SAKGKENSITLLLGLCKDGGEEVARRLLINP----RSIPSLQS----LTTDG 659 (686)
Q Consensus 592 --~~~~~~i~~~~~~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~----g~i~~L~~----Ll~~~ 659 (686)
..++.++.+.|+ ++.|++++.+. +..++..|+.++..+++++. .....+.+.. ...|.++. ++.+.
T Consensus 299 ~t~~nQ~~~~~~g~-l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~ 376 (651)
T 3grl_A 299 ATSSCQKAMFQCGL-LQQLCTILMATGVPADILTETINTVSEVIRGCQ-VNQDYFASVNAPSNPPRPAIVVLLMSMVNER 376 (651)
T ss_dssp HHHHHHHHHHHTTH-HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred CCHHHHHHHHHCCC-HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence 245778899998 99999988763 67799999999999998763 3334443311 11244444 34333
Q ss_pred -CHHHHHHHHHHHHHH
Q 046850 660 -SLKARRKADALLRLL 674 (686)
Q Consensus 660 -~~~~k~~A~~lL~~l 674 (686)
....|-.|..+++-+
T Consensus 377 ~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 377 QPFVLRCAVLYCFQCF 392 (651)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 456776666665544
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=8.3e-13 Score=113.63 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=64.3
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhC
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDN 350 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~ 350 (686)
.+.+++.||||.+.+.+|+++ +|||+||+.||.+|+.. ...||.|+..+....+.+|..++++++.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 345689999999999999998 89999999999999986 689999999998888999999999999997653
No 54
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=107.99 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=53.5
Q ss_pred CCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHH
Q 046850 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKS 341 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~ 341 (686)
....+.+.||||++.+.+||+++|||+||+.||.+|+.. ...||.|++.+. ..+.+|..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 456778999999999999999999999999999999987 789999999986 56777754433
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=9.3e-13 Score=113.44 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=64.0
Q ss_pred CCCCCcccccCcccCcCceE-ccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhC
Q 046850 279 NIPDEFRCPISLDLMRDPVI-VASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDN 350 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~-~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~ 350 (686)
.+.+++.||||+++|.+||+ ++|||+||+.||.+|+......||.|+..+....+.+|..+..+++...+..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 45678999999999999999 8999999999999999985589999999998888999998888887775553
No 56
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=102.61 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=53.5
Q ss_pred CCCCCCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 275 SVLPNIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 275 ~~~~~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
.....+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|++.+....+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3455778899999999999999997 99999999999999987 7899999999877666554
No 57
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=7.1e-13 Score=110.52 Aligned_cols=67 Identities=31% Similarity=0.566 Sum_probs=58.0
Q ss_pred CCCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhh-----CCCCCCCCCccccCCCCCCcHHHHHH
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS-----GHHTCPKSGQRLIHMALIPNYTLKSL 342 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~-----~~~~CP~c~~~l~~~~l~~n~~l~~~ 342 (686)
....+.+++.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|+..+....+.+|..++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 34467889999999999999999999999999999999987 36799999999988788888765443
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-13 Score=113.02 Aligned_cols=65 Identities=28% Similarity=0.536 Sum_probs=56.6
Q ss_pred CCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhC------CCCCCCCCccccCCCCCCcHHHHHH
Q 046850 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSG------HHTCPKSGQRLIHMALIPNYTLKSL 342 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~------~~~CP~c~~~l~~~~l~~n~~l~~~ 342 (686)
..+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+..+....+.+|..++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 4577899999999999999999999999999999999863 6789999999987778888765443
No 59
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.6e-12 Score=113.70 Aligned_cols=68 Identities=12% Similarity=0.338 Sum_probs=61.0
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCC----CCCCcHHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM----ALIPNYTLKSLLHQWC 347 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~----~l~~n~~l~~~i~~~~ 347 (686)
.+++++.||||.+++.+||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 456789999999999999998 99999999999999987 58999999998765 6789999999998873
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=4.4e-12 Score=102.76 Aligned_cols=54 Identities=33% Similarity=0.577 Sum_probs=48.0
Q ss_pred CCCCCCCCcccccCcccCcCceEcc-CcccccHHhHHHHHhh-CCCCCCCCCcccc
Q 046850 276 VLPNIPDEFRCPISLDLMRDPVIVA-SGHTYDRNSIAQWINS-GHHTCPKSGQRLI 329 (686)
Q Consensus 276 ~~~~~~~~~~Cpic~~~m~dPv~~~-cght~cr~ci~~w~~~-~~~~CP~c~~~l~ 329 (686)
....+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|++.+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4557889999999999999999998 9999999999999986 3479999999754
No 61
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.5e-12 Score=100.27 Aligned_cols=55 Identities=15% Similarity=0.401 Sum_probs=49.3
Q ss_pred CCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCC
Q 046850 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA 332 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~ 332 (686)
..+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|+..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4567899999999999999999999999999999999766789999999886554
No 62
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=108.98 Aligned_cols=66 Identities=24% Similarity=0.552 Sum_probs=57.7
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhh-----CCCCCCCCCccccCCCCCCcHHHHHH
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS-----GHHTCPKSGQRLIHMALIPNYTLKSL 342 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~-----~~~~CP~c~~~l~~~~l~~n~~l~~~ 342 (686)
...+.+++.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|+..+....+.+|..++++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 4567889999999999999999999999999999999986 46899999999988888888765443
No 63
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.26 E-value=1.1e-12 Score=116.09 Aligned_cols=69 Identities=17% Similarity=0.362 Sum_probs=61.6
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccC-------CCCCCcHHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH-------MALIPNYTLKSLLHQWC 347 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~-------~~l~~n~~l~~~i~~~~ 347 (686)
...+++.||||.+++.+||+++|||+||+.||.+|+..+...||.|++.+.. ..+.+|..+..+++.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 4567899999999999999999999999999999998778899999998753 56778999999998885
No 64
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.25 E-value=2.6e-12 Score=114.21 Aligned_cols=69 Identities=26% Similarity=0.546 Sum_probs=62.8
Q ss_pred CCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHH
Q 046850 278 PNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQW 346 (686)
Q Consensus 278 ~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 346 (686)
..+++++.||||++++.+||+++|||+||+.||.+|+..+...||.|+..+....+.+|..+++.+.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 367889999999999999999999999999999999998666999999999888888999988888765
No 65
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.24 E-value=3e-12 Score=121.00 Aligned_cols=70 Identities=23% Similarity=0.555 Sum_probs=62.4
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCcccc-CCCCCCcHHHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLI-HMALIPNYTLKSLLHQWCQ 348 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~-~~~l~~n~~l~~~i~~~~~ 348 (686)
.+.+++.||||++.+.+||++ +|||+||+.||.+|+..+...||.|+..+. ...+.+|..+.++|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456789999999999999988 999999999999999987889999999984 4568999999999999844
No 66
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=3.2e-12 Score=113.48 Aligned_cols=69 Identities=20% Similarity=0.370 Sum_probs=62.6
Q ss_pred CCCCCcccccCcccCcCceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhC
Q 046850 279 NIPDEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDN 350 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~ 350 (686)
.+.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+..+....+.+|..++++++.+....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 346789999999999999999 9999999999999986 78999999998888999999999999886653
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.21 E-value=3.9e-10 Score=115.65 Aligned_cols=198 Identities=14% Similarity=0.089 Sum_probs=151.1
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
...++.|+..|.++++.++..|++.|..+.. .++++.|+.+|.++++.++..|+.+|.++.........
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~ 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence 4578999999999999999999999987752 24688999999999999999999999998754332111
Q ss_pred HHhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMAAGAIDSIIE-VLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~~g~l~~Lv~-lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.++.+.+ ++.++ +..+|..++++|.++...... .. ..+++.|+.++.++++.++..|+.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp -----HHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred -----HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 2333432 34566 889999999999998643211 11 3468889999999999999999999988754
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 552 ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
.++++.|+.+|.+++..++..|+.+|..+..... .. ++.|..++.+.++.++..|+.+|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~-~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DI-RDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HH-HHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HH-HHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 2478999999988888899999999988853211 23 678888888888888988888888776
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=5.4e-10 Score=109.51 Aligned_cols=187 Identities=22% Similarity=0.231 Sum_probs=158.7
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.|+..|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|.++..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 468899999999999999999999987643 3578999999999999999999999988752
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCc
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~ 553 (686)
.++++.|+..|.++ +..+|..|+.+|..+.. .++++.|+.++.++++.++..|+.+|.++..
T Consensus 80 --~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp --GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred --HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 46789999999988 99999999999988742 4689999999999999999999999999843
Q ss_pred HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 554 KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 554 ~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
..+++.|..+|.+++..++..|+.+|..+.. ... ++.|..++.+.++.++..|..+|..+...
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV-RAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH-HHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH-HHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999853 123 78889999989999999999999988876
Q ss_pred C
Q 046850 634 G 634 (686)
Q Consensus 634 ~ 634 (686)
.
T Consensus 205 ~ 205 (211)
T 3ltm_A 205 N 205 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=5.6e-12 Score=115.36 Aligned_cols=64 Identities=16% Similarity=0.420 Sum_probs=53.6
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHH
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWC 347 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~ 347 (686)
.+++.||||.+.|.+||+++|||+||+.||.+|+.. ..+||.|++++... .+|..+...++.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 346799999999999999999999999999999986 78899999988643 34666666676664
No 70
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=8.2e-12 Score=109.94 Aligned_cols=68 Identities=19% Similarity=0.456 Sum_probs=58.3
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHhhC--CCCCCCCCccccCCCCCCcHHHHHHHHHHHH
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSG--HHTCPKSGQRLIHMALIPNYTLKSLLHQWCQ 348 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~--~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~ 348 (686)
.+.+.||||.+.+.+|++++|||+||+.||.+|+..+ ...||.|+..+....+.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999863 3689999999988888888776666666654
No 71
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.17 E-value=1.1e-09 Score=106.37 Aligned_cols=184 Identities=23% Similarity=0.242 Sum_probs=158.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
+..+.+++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 456889999999999999999999987643 2578999999999999999999999988742
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCc
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~ 553 (686)
..+++.|+..|.++ +..+|..|+.+|..+.. ..+++.|+.++.++++.++..|+++|.++..
T Consensus 75 --~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 --ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp --GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred --HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 35789999999998 99999999999988732 4589999999999999999999999999853
Q ss_pred HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 554 KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 554 ~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
.++++.|..+|.+++..++..|+.+|..+.. ... ++.|..++.+.++.++..|..+|..+-
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~-~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV-RAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH-HHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH-HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999842 123 788999998899999999999988765
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.17 E-value=9.4e-10 Score=107.75 Aligned_cols=190 Identities=21% Similarity=0.181 Sum_probs=159.1
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH
Q 046850 435 AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM 514 (686)
Q Consensus 435 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~ 514 (686)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--------
Confidence 4578999999999999999999999988743 46899999999998 9999999999998874
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhc
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREG 594 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~ 594 (686)
. .++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.+|.+++..++..|+.+|..+..
T Consensus 79 --~-~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 79 --D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp --C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred --C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 2 5689999999999999999999999999854 3578999999999999999999999999853
Q ss_pred HHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 595 LEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 595 ~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
... ++.|..++.+.++.++..|+.+|..+.. +. +++.|..++.++++.+|..|...|..+
T Consensus 142 ------~~~-~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~----------~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ------ERA-VEPLIKALKDEDGWVRQSAADALGEIGG---ER----------VRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ------GGG-HHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH----------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ------HHH-HHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh----------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 134 8999999988899999999999988853 21 377788889999999999999999988
Q ss_pred Hhcccc
Q 046850 675 NRCCSQ 680 (686)
Q Consensus 675 ~~~~~~ 680 (686)
.....+
T Consensus 202 ~~~~~~ 207 (211)
T 3ltm_A 202 KSFNHH 207 (211)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 776544
No 73
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.3e-11 Score=96.59 Aligned_cols=56 Identities=29% Similarity=0.600 Sum_probs=49.1
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhh--CCCCCCCCCccccCCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS--GHHTCPKSGQRLIHMA 332 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~--~~~~CP~c~~~l~~~~ 332 (686)
...+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++.+....
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3467889999999999999999999999999999999973 4679999999876543
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.15 E-value=1.6e-11 Score=141.08 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=69.7
Q ss_pred CCCCCCCcccccCcccCcCceEccCc-ccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHHHHhCCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASG-HTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQWCQDNNV 352 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cg-ht~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 352 (686)
..++|++|.|||++++|+|||++++| +||+|.+|++|+.. +.+||.+++++....+.||+++|..|++||.+++-
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 34789999999999999999999997 69999999999987 78999999999999999999999999999998663
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=5.3e-11 Score=93.07 Aligned_cols=48 Identities=31% Similarity=0.707 Sum_probs=43.3
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhh--CCCCCCCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS--GHHTCPKS 324 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~--~~~~CP~c 324 (686)
...+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3467889999999999999999999999999999999985 46789987
No 76
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.4e-11 Score=95.66 Aligned_cols=55 Identities=24% Similarity=0.460 Sum_probs=48.4
Q ss_pred CCcccccCcc-cCcCc----eEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 282 DEFRCPISLD-LMRDP----VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 282 ~~~~Cpic~~-~m~dP----v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+..+....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4689999999 99999 5679999999999999998777899999999887766654
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.12 E-value=4.6e-09 Score=101.94 Aligned_cols=185 Identities=21% Similarity=0.189 Sum_probs=157.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHh
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMI 515 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 515 (686)
+..+.++.+|.++++.++..|+.+|..+.. .++++.|+..|.++ +..+|..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC---------
Confidence 457889999999999999999999988753 36789999999988 9999999999998763
Q ss_pred hcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcH
Q 046850 516 GGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 516 ~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
. ..+++.|+.+|.++++.++..|+++|.++.. ..+++.|+.+|.+++..++..|+.+|..+..
T Consensus 74 -~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 74 -D-ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp -C-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred -C-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 2 4689999999999999999999999999854 3478999999999999999999999999853
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
... ++.|..++.+.++.++..|+.+|..+.. +. +++.|..++.+.++.+|..|...|..+.
T Consensus 137 -----~~~-~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~----------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -----ERA-VEPLIKALKDEDGWVRQSAADALGEIGG---ER----------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -----GGG-HHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH----------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -----HHH-HHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh----------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 234 8999999998899999999999988842 22 3778888889999999999999888765
Q ss_pred h
Q 046850 676 R 676 (686)
Q Consensus 676 ~ 676 (686)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 78
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.12 E-value=9.2e-12 Score=113.94 Aligned_cols=68 Identities=18% Similarity=0.400 Sum_probs=57.4
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc---------CCCCCCcHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI---------HMALIPNYTLKSLLHQW 346 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~---------~~~l~~n~~l~~~i~~~ 346 (686)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|+..+. ...+.++..+++.|.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 578899999999999999999999999999999999887779999998642 22456888887777644
No 79
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.11 E-value=3.3e-11 Score=114.47 Aligned_cols=68 Identities=25% Similarity=0.516 Sum_probs=62.0
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCcHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNYTLKSLLHQW 346 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 346 (686)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|+..+....+.+|..+.+.+.++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 67889999999999999999999999999999999987667999999999888888998888888764
No 80
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.09 E-value=5.6e-11 Score=105.27 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=57.0
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCC-CcHHHHHHHHHH
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALI-PNYTLKSLLHQW 346 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~-~n~~l~~~i~~~ 346 (686)
.+.+++.||||.+.+.+||+++|||+||+.||.+|+..+...||.|+..+....+. ++..+.+++.++
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 45678999999999999999999999999999999998678999999998766654 456666666544
No 81
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.08 E-value=4.4e-11 Score=95.91 Aligned_cols=57 Identities=21% Similarity=0.452 Sum_probs=50.4
Q ss_pred CCCCCcccccCcccCcCc-------eEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 279 NIPDEFRCPISLDLMRDP-------VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dP-------v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
...+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|+..+....+.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 346688999999999998 88899999999999999987 6799999999987777665
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=89.74 Aligned_cols=48 Identities=29% Similarity=0.768 Sum_probs=43.0
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhh--CCCCCCCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS--GHHTCPKS 324 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~--~~~~CP~c 324 (686)
...+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467788999999999999999999999999999999875 57889987
No 83
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.4e-11 Score=94.65 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=45.9
Q ss_pred CCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 279 NIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
...+++.||||++.+.+|++++|||+||+.||.+|+.. ...||.|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 44678999999999999999999999999999999986 6899999988753
No 84
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.5e-10 Score=95.66 Aligned_cols=55 Identities=22% Similarity=0.481 Sum_probs=48.5
Q ss_pred CCCCCCCcccccCcccCcC----ceEccCcccccHHhHHHHHhhC--CCCCCCCCccccCC
Q 046850 277 LPNIPDEFRCPISLDLMRD----PVIVASGHTYDRNSIAQWINSG--HHTCPKSGQRLIHM 331 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~d----Pv~~~cght~cr~ci~~w~~~~--~~~CP~c~~~l~~~ 331 (686)
...+.+.+.||||.+.+.+ |++++|||+||+.||.+|+... ...||.|++.+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4467889999999999999 9999999999999999999874 47999999987543
No 85
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.8e-10 Score=91.70 Aligned_cols=53 Identities=21% Similarity=0.440 Sum_probs=46.9
Q ss_pred CCCCCCCcccccCcccCcCc-------eEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 277 LPNIPDEFRCPISLDLMRDP-------VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dP-------v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
...+.+.+.||||++.+.+| ++++|||+||..||.+|+.. ...||.|++.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34567889999999999988 88899999999999999987 7899999988753
No 86
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.01 E-value=7.7e-09 Score=105.93 Aligned_cols=200 Identities=14% Similarity=0.077 Sum_probs=154.9
Q ss_pred HHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhh
Q 046850 433 AEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCK 512 (686)
Q Consensus 433 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~ 512 (686)
...+.++.|+..|.++++.++..|+.+|.++.. .++++.|+.+|.++ +..+|..|+++|..+...+...
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccccc
Confidence 345789999999999999999999999998862 35789999999998 9999999999999886432211
Q ss_pred hHhhcCCCcHHHHHH-hcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCC
Q 046850 513 VMIGGRPRAIPALVG-LLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGC 591 (686)
Q Consensus 513 ~~i~~~~g~i~~Lv~-lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~ 591 (686)
...++.|.+ ++.++++.++..|+++|.++....+.. ...+++.|+.+|.++++.++..|+.+|.++..
T Consensus 89 ------~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 ------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp ------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred ------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 113344442 456788999999999999997433211 12467889999999999999999999988753
Q ss_pred hhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHH
Q 046850 592 REGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALL 671 (686)
Q Consensus 592 ~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL 671 (686)
... ++.|+.++.+.++.++..|+.+|..+.... +. +++.|..++.+.++.+|..|.+.|
T Consensus 158 ---------~~~-~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~----------~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 ---------KAT-IPLLINLLKDPNGDVRNWAAFAININKYDN-SD----------IRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp ----------CC-HHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-HH----------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ---------HHH-HHHHHHHHcCCCHHHHHHHHHHHHhhccCc-HH----------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 246 899999999999999999999998886432 22 366777788888888888888877
Q ss_pred HHHH
Q 046850 672 RLLN 675 (686)
Q Consensus 672 ~~l~ 675 (686)
..+.
T Consensus 217 ~~~~ 220 (280)
T 1oyz_A 217 SYRK 220 (280)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7654
No 87
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.00 E-value=4.5e-09 Score=125.08 Aligned_cols=273 Identities=16% Similarity=0.148 Sum_probs=196.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHH----HhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIA----EAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~----~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
..++.|+..+.+++...+..|+.+|..++...+..-..-. -.+++|.++.++.++++.++..|+.+|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 3678899999999999999999999999875443211000 123577788888889999999999999988754332
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh--hhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDC--KVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
...-.-.+.++.+...+.++ +.++|..|+.+|..|+..... ...+ .++++.++.++.+.++.++..|+.++.++
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l---~~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM---HNIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH---HHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 11111125788888888888 999999999999999875432 2222 35788888999888899999999999999
Q ss_pred cCCCCcHHHHH--HcCcHHHHHHHh-----------cC-----------CCchhHHHHHHHHHHHhCChhcHHHHHhCCC
Q 046850 548 AVYNANKASVV--VAGAVPLLIELL-----------MD-----------DKAGITDDALAVLALLLGCREGLEEIRKCRV 603 (686)
Q Consensus 548 s~~~~~~~~iv--~~G~v~~Ll~lL-----------~~-----------~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~ 603 (686)
+.....+..+- -..+++.++..+ .+ .+..++..|..+|..++.... . .++. ..
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~-~~~~-~l 360 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-D-ELLP-HI 360 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-G-GGHH-HH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-H-HHHH-HH
Confidence 97654333221 124466666666 22 223467788889988875322 1 1111 23
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 604 LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 604 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
++.+.+++.+.+...|+.|+.+|.+++...+......+ .++++.|+.++.+.++++|..|.+.+..+..+
T Consensus 361 -~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l---~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 361 -LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL---PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp -HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred -HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67777788888899999999999999987654322222 34689999999999999999999999877764
No 88
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.98 E-value=4.8e-10 Score=91.65 Aligned_cols=59 Identities=17% Similarity=0.418 Sum_probs=49.0
Q ss_pred CCCCCCCcccccCcccCcCc---eEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 277 LPNIPDEFRCPISLDLMRDP---VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dP---v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
.....+++.|+||++.|.+| +.++|||.||+.||.+|+.. ..+||.|+..+....+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 33567789999999999866 34599999999999999986 6899999999877666554
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.96 E-value=5.1e-10 Score=91.07 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=45.7
Q ss_pred CCCCCcccccCcccC--cCceEcc--CcccccHHhHHHHHhhCCCCCCCCCccccCCC
Q 046850 279 NIPDEFRCPISLDLM--RDPVIVA--SGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA 332 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m--~dPv~~~--cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~ 332 (686)
.+.+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.||+.+....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 567889999999988 4566655 99999999999999777889999999886544
No 90
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.96 E-value=1.5e-10 Score=90.60 Aligned_cols=54 Identities=22% Similarity=0.474 Sum_probs=47.3
Q ss_pred CCcccccCcccCcCc-------eEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 282 DEFRCPISLDLMRDP-------VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 282 ~~~~Cpic~~~m~dP-------v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|+..+....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 467999999999988 78899999999999999987 7899999999877665543
No 91
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.91 E-value=5.8e-08 Score=109.70 Aligned_cols=264 Identities=16% Similarity=0.176 Sum_probs=183.2
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.+...+.+.++.++..|+..|..++...... ......+|.+..++.+++..++..|+.+|..++...... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 46677778888889999999999999998743321 223567899999999999999999999999887543221 1
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA- 552 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~- 552 (686)
.....++.+..++.++ +..+|..++.+|..++..-.... .. ..+++.++.+++++++.++..|+.+|..++..-+
T Consensus 239 ~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI--TK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH--HH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc--ch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 2234778888888887 89999999999999975422111 22 4579999999999999999999999999986543
Q ss_pred -cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 553 -NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 553 -~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
.+....-..+++.+..++.+++..++..++.+|..++..-. .... .... +|.+..+++..++.+|..++..|..++
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l-~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT-IEHL-LPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHT-HHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHH-HHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 22223345677888888888888899888888888864211 1111 1123 677777777777778888777777766
Q ss_pred ccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 632 KDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 632 ~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
...+..... ..++|.|..++.+.+.++|..+...+..+
T Consensus 392 ~~~~~~~~~-----~~~lp~l~~~~~d~~~~vr~~~~~~l~~l 429 (588)
T 1b3u_A 392 EVIGIRQLS-----QSLLPAIVELAEDAKWRVRLAIIEYMPLL 429 (588)
T ss_dssp HHSCHHHHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HhcCHHHHH-----HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 543222110 11345555555555555555555444443
No 92
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.90 E-value=2.9e-09 Score=126.71 Aligned_cols=277 Identities=18% Similarity=0.149 Sum_probs=192.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.+++.+++.+.+++..|+++|..+....+..-. -.-.++++.+..++.++++.++..|+.+|.+++......-.-
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4677788888888999999999999877754332110 001246788888899999999999999999998643321110
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhc-CCCcHHHHHHhcc-----------c----------
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGG-RPRAIPALVGLLR-----------E---------- 531 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~-----------~---------- 531 (686)
.-.+.++.++..+.+. +.+++..|+..+..++.....+..+.. ....+|.++..+. +
T Consensus 253 ~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 253 HMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 1124778888888887 899999999999999876543332211 0245677777662 2
Q ss_pred -CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHH
Q 046850 532 -GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLID 610 (686)
Q Consensus 532 -~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~ 610 (686)
.+..+++.|..+|..|+...+. .++ ..+++.+..++.+.+..+++.|+.+|++++........-.-.+. ++.++.
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~-l~~l~~ 407 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL-IPHLIQ 407 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH-HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHHHHH
Confidence 1224688888899888864331 111 23567777777888899999999999999975432111111234 788888
Q ss_pred HHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 611 LLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 611 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
.+.+.++.++..|+.+|.+++...+........ .++++.|+..+.+.++++|..|.+.|..+.+..
T Consensus 408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 408 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 888889999999999999999643211000000 235788888888889999999999988876543
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.88 E-value=3.6e-08 Score=111.39 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=191.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.|...+.+.+..++..|+..|..++...+.. ......+|.+..+..+++..++..|+.+|..++..-...
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--- 160 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--- 160 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---
Confidence 35666666667788999999999999999755432 123345777778888889999999999998887553321
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCc
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNAN 553 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~ 553 (686)
.....++.+..++.++ +.++|..|+.+|..++..-..... . ...+|.|..++.++++.++..|+.+|..++..-+.
T Consensus 161 ~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 161 VKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 1234677788888887 999999999999999765433222 2 46899999999999999999999999998865332
Q ss_pred HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 554 KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 554 ~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
......+++.+..++.+++..++..++.+|..++..... . ...... ++.+..++...++.++..|+..|..++..
T Consensus 237 --~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 237 --EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-E-ITKTDL-VPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-c-cchhHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 123345788888888888889999999999999863211 1 122344 89999999888999999999999998875
Q ss_pred ChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 634 GGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 634 ~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
.+......... ..++|.+..++.+.++.+|+.+.+.|..+
T Consensus 312 ~~~~~~~~~~~-~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 312 LSADCRENVIM-SQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp SCTTTHHHHHH-HTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred hChhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 43321110111 23467777777777777777666554443
No 94
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.87 E-value=1.9e-08 Score=110.05 Aligned_cols=276 Identities=13% Similarity=0.112 Sum_probs=190.9
Q ss_pred hhHHHHHHHhhcC--CHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhcCC--CHHHHHHHHHHhhccccccc
Q 046850 394 MTAEFLVGKLAMG--SPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLSSH--DPRIQENAVTALLNLSIFDN 468 (686)
Q Consensus 394 ~~i~~Lv~~L~s~--~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~ 468 (686)
..++.|+..+.++ ++..+..|+..|..++... ++.-.... ..+++.++..|.++ ++.++..|+.++.++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999999988 8999999999999998743 21101111 23678888888887 79999999999988653211
Q ss_pred -c-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh--hhHhhcCC-CcHHHHHHhcccCChHHHHHHHHH
Q 046850 469 -N-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDC--KVMIGGRP-RAIPALVGLLREGTTAGKKDAATA 543 (686)
Q Consensus 469 -~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~--~~~i~~~~-g~i~~Lv~lL~~~~~~~~~~Al~a 543 (686)
+ .......-.++.+...+.++ +.++|..++.+|..+...... ...+ . ++++.++..+.+.++.++..|+..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 1 00111111355566666666 889999999999999765422 1222 3 688888888888889999999999
Q ss_pred HHHhcCCCC------------------cHHHHHH---cCcHHHHHHHhcC-------CCchhHHHHHHHHHHHhCChhcH
Q 046850 544 LFNLAVYNA------------------NKASVVV---AGAVPLLIELLMD-------DKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 544 L~nLs~~~~------------------~~~~iv~---~G~v~~Ll~lL~~-------~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
+.+++.... ....+++ ..++|.+++.|.+ .+..++..|+.+|..|+..-. .
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~ 361 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D 361 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H
Confidence 998875420 0011111 3456777777743 234688889999999976322 1
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
.++. .. ++.+...+.+.+...|+.|+.+|..++....+....... ..++|.|+..+.+.++.+|..|.++|..+.
T Consensus 362 -~~~~-~~-~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 362 -DIVP-HV-LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp -THHH-HH-HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -HHHH-HH-HHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2221 23 677777887788999999999999999754322111111 457999999999999999999999999888
Q ss_pred hcccc
Q 046850 676 RCCSQ 680 (686)
Q Consensus 676 ~~~~~ 680 (686)
.....
T Consensus 437 ~~~~~ 441 (462)
T 1ibr_B 437 ELLPE 441 (462)
T ss_dssp HHGGG
T ss_pred Hhccc
Confidence 76443
No 95
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3.6e-09 Score=85.38 Aligned_cols=53 Identities=13% Similarity=0.447 Sum_probs=45.5
Q ss_pred CCCCCCCcccccCcccCcCceEc---cCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIV---ASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~---~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
.....++..|+||++.+.+|..+ +|||.||+.||.+|+.. ..+||.|++.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 44567789999999999877654 99999999999999997 5699999998754
No 96
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.83 E-value=1.6e-07 Score=107.03 Aligned_cols=265 Identities=17% Similarity=0.151 Sum_probs=185.8
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccH-HH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK-IL 472 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-~~ 472 (686)
..++.+.+.|.+.++.++..|+.++..+...+++. +.+.++++.|..+|.++|+.++.+|+.+|..++.++... ..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 46677888999999999999999999999866653 233578899999999999999999999999998765421 11
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC--
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY-- 550 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~-- 550 (686)
-...+.+..|+..+.+. ++-.+...+.+|..++..++.. . ..+++.+..++++.++.++..|++++.++...
T Consensus 198 ~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~--~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 198 DLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE--A---QSICERVTPRLSHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH--H---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH--H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence 11224577788888777 7788888888888887543311 1 34688888889999999999999999999742
Q ss_pred -CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-Chh---------------c----HHH------HHhCCC
Q 046850 551 -NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CRE---------------G----LEE------IRKCRV 603 (686)
Q Consensus 551 -~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~---------------~----~~~------i~~~~~ 603 (686)
++.....+-.++.++|+.++ ++++.++..|+..|..++. +++ . +.+ +.....
T Consensus 272 ~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 272 KDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp BTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred CCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 22222223345667777655 4678888888888888863 111 0 111 112222
Q ss_pred ---ChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 604 ---LVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 604 ---~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
.++.|..++...+...+..++..+..+|...++.. . ..++.|+.++....+.++..+...++.+-
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-~------~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-E------RCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-H------HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-H------HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 13445556666788899999999999998764322 1 13778888888887777776655555443
No 97
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.81 E-value=2.9e-09 Score=84.43 Aligned_cols=47 Identities=26% Similarity=0.452 Sum_probs=42.0
Q ss_pred CCcccccCcccCcCc-eEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 282 DEFRCPISLDLMRDP-VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 282 ~~~~Cpic~~~m~dP-v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
++..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 456899999999997 67799999999999999987 689999998875
No 98
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=87.23 Aligned_cols=53 Identities=25% Similarity=0.571 Sum_probs=46.7
Q ss_pred CCCCCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
...+.+.+.||||++.+.+ ++++|||+||..||.+|+.. ...||.|+..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCC
Confidence 4466788999999999999 88999999999999999984 88999999887644
No 99
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.79 E-value=2.2e-08 Score=115.95 Aligned_cols=192 Identities=15% Similarity=0.110 Sum_probs=147.3
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccCc--hhhh
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIE-VLQSGKTMEARENAAATIFSLSMID--DCKV 513 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~-lL~~~~~~e~~~~aa~~L~~Ls~~~--~~~~ 513 (686)
.|.+++..|+++++..+..|+.+|.||+.+...+..+...|++.+++. +|.+. +.++|..|+++|.||+... +.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence 455577889999999999999999999987777888999999888665 56666 9999999999999998754 6777
Q ss_pred HhhcCCCcHHHHHHhcccCC---------------------hHHHHHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhc
Q 046850 514 MIGGRPRAIPALVGLLREGT---------------------TAGKKDAATALFNLAVYNA-NKASVVVAGAVPLLIELLM 571 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~---------------------~~~~~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~ 571 (686)
.+.. .|++++|..+|.... ..+...++.+|++||...+ ....+...|+++.|+..|.
T Consensus 114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 8888 999999999986311 1244568899999997665 5667788899999999984
Q ss_pred C---CCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCC--hHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 572 D---DKAGITDDALAVLALLLG-CREGLEEIRKCRVL--VPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 572 ~---~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~--i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
+ ....++..|+.+|..|+. +++..+.+.+.+.. ...+..+ ..++...+..++++|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 3 246789999999999987 44556666665541 1222222 2344555778889999875
No 100
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=6.9e-09 Score=82.46 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=43.1
Q ss_pred CCCCCcccccCcccCc---CceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 279 NIPDEFRCPISLDLMR---DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~---dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
...++..|+||++.+. .++.++|||.||..||.+|+.. +.+||.|+..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 4456789999999884 4567899999999999999998 6789999988754
No 101
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.77 E-value=4.2e-09 Score=79.61 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=41.2
Q ss_pred CCcccccCcccCcC----ceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 282 DEFRCPISLDLMRD----PVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 282 ~~~~Cpic~~~m~d----Pv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
++..||||++.+.+ +++++|||.||..||.+|+.. ...||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 35689999999876 778899999999999999998 489999998763
No 102
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.76 E-value=4e-09 Score=79.75 Aligned_cols=48 Identities=25% Similarity=0.658 Sum_probs=41.9
Q ss_pred CCCCcccccCcccCcC---ceEcc-CcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 280 IPDEFRCPISLDLMRD---PVIVA-SGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~d---Pv~~~-cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. +.+||.|+..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 3456799999999987 77786 9999999999999986 78999999865
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.74 E-value=4.5e-08 Score=113.28 Aligned_cols=193 Identities=17% Similarity=0.108 Sum_probs=147.2
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHH-HHhcccCChHHHHHHHHHHHHhcCCC--Cc
Q 046850 477 GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPAL-VGLLREGTTAGKKDAATALFNLAVYN--AN 553 (686)
Q Consensus 477 g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~L-v~lL~~~~~~~~~~Al~aL~nLs~~~--~~ 553 (686)
..+.++++.|+++ +.+.|..|+++|.+|+.++..+..+.. .|+|..+ ..+|.+.+..++..|+++|.||+... +.
T Consensus 34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 4566788889998 889999999999999998888888888 7777765 56788889999999999999999754 57
Q ss_pred HHHHHHcCcHHHHHHHhcCC--------C-------------chhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHH
Q 046850 554 KASVVVAGAVPLLIELLMDD--------K-------------AGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDL 611 (686)
Q Consensus 554 ~~~iv~~G~v~~Ll~lL~~~--------~-------------~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~l 611 (686)
+..+++.|++++|..+|... . ..+.+.++.+|++||. +.+....+...+. ++.|+..
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~-l~~l~~~ 190 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQT-ILRLLFR 190 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHH-HHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhccc-HHHHHHH
Confidence 89999999999999998321 0 1345678899999986 5555667788787 9999987
Q ss_pred Hhc---CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCC---hHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 612 LRF---GSAKGKENSITLLLGLCKDGGEEVARRLLINPRS---IPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 612 L~~---~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~---i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
|.+ ....++..|+.+|..++..+ ....+.+.. .|. +..+..+....+ ..+..++.+|..+.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~-~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDN-LKVGQAITD-DQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHT-CCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHh-cchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 744 34679999999999999887 556677766 443 334444444333 34556667666653
No 104
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=2.9e-09 Score=80.91 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=40.9
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
.+++.||||++.+.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467899999999999999999999999999874 6789999988653
No 105
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.73 E-value=7.5e-09 Score=87.16 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=43.7
Q ss_pred CCCCcccccCcccCcC---ceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 280 IPDEFRCPISLDLMRD---PVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~d---Pv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
..++..|+||++.+.+ ++.++|||.||..||.+|+.. +.+||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567899999999887 777899999999999999986 7799999987753
No 106
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.72 E-value=3.3e-09 Score=95.99 Aligned_cols=55 Identities=22% Similarity=0.482 Sum_probs=48.0
Q ss_pred CCCcccccCcccCcCc-------eEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 281 PDEFRCPISLDLMRDP-------VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dP-------v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
.+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 4578999999999999 88999999999999999987 6799999999876655443
No 107
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=9.2e-09 Score=83.24 Aligned_cols=50 Identities=12% Similarity=0.397 Sum_probs=43.4
Q ss_pred CCCCcccccCcccCcCc---eEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 280 IPDEFRCPISLDLMRDP---VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dP---v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
..++..|+||++.+.++ +.++|||.||..||.+|+.. +.+||.|+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34677999999999887 66799999999999999987 6899999987753
No 108
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.65 E-value=2e-07 Score=106.19 Aligned_cols=261 Identities=15% Similarity=0.080 Sum_probs=185.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
....+++.+.+.+.+.++-+.-.+..++..+++... -++..+.+-|.++|+.++..|+.+|.++... + +
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~-----~ 118 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-K-----I 118 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-G-----G
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-H-----H
Confidence 345667788899999998888888888875544321 2567888889999999999999999999632 1 1
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcH
Q 046850 475 AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANK 554 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~ 554 (686)
....++.+..+|.+. ++.+|..|+.++..+..... ..+.. .+.++.|.++|.+.++.++..|+.+|..++...+..
T Consensus 119 ~~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p--~~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINA--QMVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp HHHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSC--CCHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhCh--hhccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 123467788999888 99999999999999976432 12222 468899999999999999999999999999876522
Q ss_pred -HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 555 -ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 555 -~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
..-+..+.+..|++.+.+.++-.+...+.+|..++..++.. .... ++.+..++++.++.++..|+.++..+...
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~-l~~l~~~l~~~~~~V~~ea~~~i~~l~~~ 269 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSI-CERVTPRLSHANSAVVLSAVKVLMKFLEL 269 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHH-HHHHTTCSCSSTTHHHHHHHHHHHHSCCS
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHH-HHHHHHHHcCCChHHHHHHHHHHHHHhhc
Confidence 11112345667777777777777777888887777532211 0122 66777777888889999999999998742
Q ss_pred C--hHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 634 G--GEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 634 ~--~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
. +++....+. ..+.+.|+.++. .++.+|..|...|..+....
T Consensus 270 ~~~~~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 270 LPKDSDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp CCBTTBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence 1 122333322 224677777664 78888888887777665543
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.62 E-value=2.5e-08 Score=87.76 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=41.4
Q ss_pred CCcccccCcccCcCce------------------EccCcccccHHhHHHHHhh----CCCCCCCCCccccC
Q 046850 282 DEFRCPISLDLMRDPV------------------IVASGHTYDRNSIAQWINS----GHHTCPKSGQRLIH 330 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv------------------~~~cght~cr~ci~~w~~~----~~~~CP~c~~~l~~ 330 (686)
.+..||||++.|.+|+ +++|||.||+.||.+|+.. .+.+||.|+..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3569999999998875 6799999999999999963 36799999987753
No 110
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.56 E-value=1.3e-08 Score=82.04 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=41.2
Q ss_pred CCCCcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
+.+++.|+||++.+.+||+++|||+ ||..|+.+| ..||.|+..+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3456799999999999999999999 999999998 789999988753
No 111
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.54 E-value=4.4e-08 Score=102.95 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=44.5
Q ss_pred CcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 283 EFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
...|+||.+.+.+|+.++|||.||..|+..|+..+...||.|+..+...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999999999999999999999999986688999999987543
No 112
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.52 E-value=2.2e-06 Score=82.67 Aligned_cols=221 Identities=15% Similarity=0.096 Sum_probs=159.5
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KI 471 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~ 471 (686)
+..+..|.+.|...|+.++..|+.+|..+.+.-+.......-...++.++.++++.|..+...|+.+|..|-.+.+- ..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 35778889999999999999999999999986444433333345789999999999999999999999988766443 44
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.+.. .+..+..++.++ +.-.++.|+..|..|...+.. .+++..+..++.+.+.+++..|+.+|.+++...
T Consensus 112 ~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 3333 366788888888 999999999999999433221 456778888998899999999999999999866
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHH--hcCChHHHHHHHHH
Q 046850 552 ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLL--RFGSAKGKENSITL 626 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL--~~~s~~~ke~A~~~ 626 (686)
++...+ .+++.-+-.+|.+.++.+++.|+.+|..+.+.+-....+.+--. +-..++-+ ..|.|..+..|-.+
T Consensus 182 ~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 182 ADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK-ISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp SSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH-HHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH-HHHHHHHHHHhcCChhHHHHHHHH
Confidence 432211 23444566678888999999999999999886533111111111 33333311 23666666666544
No 113
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.52 E-value=4.4e-06 Score=99.06 Aligned_cols=275 Identities=14% Similarity=0.143 Sum_probs=189.3
Q ss_pred hhHHHHHHHhhcC--CHHHHHHHHHHHHHHHhhCchhHHHHHH--hCCHHHHHHhhcCC--CHHHHHHHHHHhhcccccc
Q 046850 394 MTAEFLVGKLAMG--SPEIQSQAAYELRLLAKTGMDNRRIIAE--AGAIPFLVTLLSSH--DPRIQENAVTALLNLSIFD 467 (686)
Q Consensus 394 ~~i~~Lv~~L~s~--~~~~q~~al~~L~~La~~~~~~r~~i~~--~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~ 467 (686)
..++.|+..+.++ ++..+..++..|..++..-.. ..+.. ...++.+...+.++ +..++..|+.+|.++...-
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678888999988 899999999999999874211 11111 24567777778776 6889999999998876431
Q ss_pred c-c-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHH
Q 046850 468 N-N-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD--CKVMIGGRPRAIPALVGLLREGTTAGKKDAATA 543 (686)
Q Consensus 468 ~-~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~a 543 (686)
. + .........++.+...+.+. +.+++..++.+|..+..... ....+ . ..+++.++..+.+.++.++..|+..
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~v~~~al~~ 282 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhcCCchHHHHHHHHH
Confidence 1 1 11111122566677777666 88999999999999876432 12222 2 3688888888888888999999999
Q ss_pred HHHhcCCCC---------------------cHHHHHHcCcHHHHHHHhcC-------CCchhHHHHHHHHHHHhCChhcH
Q 046850 544 LFNLAVYNA---------------------NKASVVVAGAVPLLIELLMD-------DKAGITDDALAVLALLLGCREGL 595 (686)
Q Consensus 544 L~nLs~~~~---------------------~~~~iv~~G~v~~Ll~lL~~-------~~~~v~~~al~~L~nLa~~~~~~ 595 (686)
+.+++.... ...+-.-..+++.+++.|.. .+..++..|+.+|..++..-..
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~- 361 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED- 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-
Confidence 988875320 11110113456777777742 3457888888899888753221
Q ss_pred HHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 046850 596 EEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLN 675 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~ 675 (686)
.++. .. ++.+...+.+.+...|+.|+.+|..++...+++...... ..++|.|+..+.+.++.+|..|.++|..+.
T Consensus 362 -~~~~-~~-l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 362 -DIVP-HV-LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp -GGHH-HH-HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -hhHH-HH-HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111 23 566667777788999999999999999876533222222 236899999999999999999999998887
Q ss_pred hccc
Q 046850 676 RCCS 679 (686)
Q Consensus 676 ~~~~ 679 (686)
....
T Consensus 437 ~~~~ 440 (876)
T 1qgr_A 437 ELLP 440 (876)
T ss_dssp HHCG
T ss_pred HhCc
Confidence 7643
No 114
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.47 E-value=3e-08 Score=89.65 Aligned_cols=55 Identities=22% Similarity=0.482 Sum_probs=48.7
Q ss_pred CCCcccccCcccCcCc-------eEccCcccccHHhHHHHHhhCCCCCCCCCccccCCCCCCc
Q 046850 281 PDEFRCPISLDLMRDP-------VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMALIPN 336 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dP-------v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n 336 (686)
++.+.||||++.+.+| +.++|||+||..||.+|+.. ..+||.|+..+....+.|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 5678999999999887 88899999999999999987 7899999999887666554
No 115
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.46 E-value=7.3e-07 Score=105.57 Aligned_cols=271 Identities=14% Similarity=0.144 Sum_probs=180.7
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCc-hhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccH--
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGM-DNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK-- 470 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k-- 470 (686)
..++.+...+.+.++..+..|+..|..++.... +.-.... ..+++.|+..+.++++.++..++++|..++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 456677777888899999999999999986432 1111111 247888999999999999999999999987532110
Q ss_pred HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc------hhhhHhhcCCCcHHHHHHhcccCC--hHHHHHHHH
Q 046850 471 ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID------DCKVMIGGRPRAIPALVGLLREGT--TAGKKDAAT 542 (686)
Q Consensus 471 ~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~------~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~Al~ 542 (686)
..-.-...++.++..+.+. ..++..|+++|.+++..- .....+ ..+++.|+.++.+.+ +.++..++.
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 0001123577788888664 789999999999987532 122222 346788888887543 688999999
Q ss_pred HHHHhcCCCCcH-HHHHHcCcHHHHHHHhcCC---------------CchhHHHHHHHHHHHhCChhc-HHHHHhCCCCh
Q 046850 543 ALFNLAVYNANK-ASVVVAGAVPLLIELLMDD---------------KAGITDDALAVLALLLGCREG-LEEIRKCRVLV 605 (686)
Q Consensus 543 aL~nLs~~~~~~-~~iv~~G~v~~Ll~lL~~~---------------~~~v~~~al~~L~nLa~~~~~-~~~i~~~~~~i 605 (686)
+|..++...+.. ...+ ..+++.+++.|... ...++..++.+|.+++..-.. -..... .. +
T Consensus 523 al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l-~ 599 (861)
T 2bpt_A 523 ALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-ML-M 599 (861)
T ss_dssp HHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HH-H
T ss_pred HHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HH-H
Confidence 999998765432 2222 24667777776421 334667788888888752211 000111 22 6
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 606 PLLIDLLRFGSA-KGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 606 ~~Lv~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+.+..+++..+. .+++.++.++..++...+......+- .++|.|...+.+.++.++..|..++..+.+
T Consensus 600 ~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~---~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE---TFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH---HHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 777778877666 78999998888888654433333332 258888888877788888888877765544
No 116
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.43 E-value=7.6e-06 Score=93.54 Aligned_cols=255 Identities=12% Similarity=0.069 Sum_probs=174.7
Q ss_pred hhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHH
Q 046850 392 VKMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 392 ~~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
.+..++.+.+.|.+.++.++..|+.++..+...+++.. .++++.+..+|.+.|+.++..|+.+|..++..+....
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 34567888899999999999999999999998776543 2678888899999999999999999999986543211
Q ss_pred HHHhcCcHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc------c
Q 046850 472 LIMAAGAIDSIIEVLQS--------------GKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR------E 531 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~--------------~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~------~ 531 (686)
... ...++.++.+|.+ -.++-.+...+.+|..++..+.... ...++.|..++. +
T Consensus 215 ~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 215 AHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 111 2578888887763 1267778888899999887653211 123444444442 2
Q ss_pred CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHH
Q 046850 532 GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDL 611 (686)
Q Consensus 532 ~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~l 611 (686)
.+..+...|++++.++...+ .+. ..++..|..+|.+.++.++..|+..|..++.... .++. .. .+.++..
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~-~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RH-RSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GG-HHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HH-HHHHHHH
Confidence 23477888888888875432 122 2467788888887888888888888888875321 1222 12 5677777
Q ss_pred HhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 612 LRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 612 L~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+...+..+|..|+.+|..++...+- .. +++.|...+.+.++..|..+...+..+..
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~nv---~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNNI---RG------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSST---HH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHHHHcccccH---HH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777788888888888888876421 11 24556666666677777766665555543
No 117
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=9.7e-08 Score=77.13 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=39.8
Q ss_pred CCCcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
.+++.||||++.+.+||+++|||. ||+.|+.+ ...||.|+..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 456799999999999999999999 99999964 4789999998754
No 118
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.7e-07 Score=76.84 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCcccccCcccCcC--------------ceEc-cCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 282 DEFRCPISLDLMRD--------------PVIV-ASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 282 ~~~~Cpic~~~m~d--------------Pv~~-~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
++-.|+||++.|.+ ++.+ .|||.|+..||.+|+.. +.+||.|++.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45679999998876 4455 59999999999999987 6799999988653
No 119
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.35 E-value=1e-05 Score=95.95 Aligned_cols=274 Identities=14% Similarity=0.095 Sum_probs=184.0
Q ss_pred hhHHHHHHHhhcC--CHHHHHHHHHHHHHHHhhCchhH-HHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-
Q 046850 394 MTAEFLVGKLAMG--SPEIQSQAAYELRLLAKTGMDNR-RIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN- 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~--~~~~q~~al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~- 469 (686)
..++.+...+.++ +.+++..|+.+|..++..-..+- .......+++.+...+.+++.+++..|+.+|..+......
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4567777778766 68899999999998875322110 0011122577777888888999999999999998764333
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh----------------h---hHhh-cCCCcHHHHHHhc
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDC----------------K---VMIG-GRPRAIPALVGLL 529 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~----------------~---~~i~-~~~g~i~~Lv~lL 529 (686)
-...+....++.++..+.+. +..++..|+..+.+++..... + ..+. .....++.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 12223336788888888777 889999999999888754210 0 0000 0023567777777
Q ss_pred cc-------CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCCh--hcHHHHHh
Q 046850 530 RE-------GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCR--EGLEEIRK 600 (686)
Q Consensus 530 ~~-------~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~--~~~~~i~~ 600 (686)
.. ++..++..|+.+|..++..-+. .++ ..+++.+...+.+.+..+++.|+.+|..++... +.....+
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 3457888899999888764321 111 235566666777888999999999999998743 2222222
Q ss_pred CCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHH--HHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 601 CRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEV--ARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 601 ~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~--~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
... +|.++..+...++.++..|+.+|.+++...++.. ...+ ..+++.|+..+.+. ++++..|.++|..+...
T Consensus 407 ~~~-l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l---~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQA-MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL---APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH---HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH---HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 234 7888888988889999999999999997643210 0111 12477788877764 88999998888877654
No 120
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=9.1e-08 Score=80.98 Aligned_cols=66 Identities=11% Similarity=0.262 Sum_probs=46.9
Q ss_pred CCcccccCcccCcCceEc---cCcccccHHhHHHHHhh----C---CCCCCC--CCcc--ccCCCCCCcHHHHHHHHHHH
Q 046850 282 DEFRCPISLDLMRDPVIV---ASGHTYDRNSIAQWINS----G---HHTCPK--SGQR--LIHMALIPNYTLKSLLHQWC 347 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~---~cght~cr~ci~~w~~~----~---~~~CP~--c~~~--l~~~~l~~n~~l~~~i~~~~ 347 (686)
+.+.||||++.+.+|+.+ +|||.||+.|+.+|+.. | ...||. |+.. +....+ .+....+++++|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 478999999999999765 69999999999999984 3 357999 9877 443221 1222244555554
Q ss_pred H
Q 046850 348 Q 348 (686)
Q Consensus 348 ~ 348 (686)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 3
No 121
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.33 E-value=3e-05 Score=88.57 Aligned_cols=255 Identities=15% Similarity=0.076 Sum_probs=177.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHh
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMA 475 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 475 (686)
....++.+.+.+.+.++-+--.+..++..+++.... ++..|.+-|.++++.++..|+.+|+++... .+.
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~- 140 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC- 140 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH-
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH-
Confidence 344567778888888887777777777655432221 467788888999999999999999999731 233
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHH
Q 046850 476 AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKA 555 (686)
Q Consensus 476 ~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~ 555 (686)
...++.+..+|.+. ++.+|..|+.++..+..... ..+ .++++.+..+|.+.++.++..|+.+|..++..++...
T Consensus 141 ~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p--~~v---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 141 RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVP--ELM---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCG--GGG---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCh--HHH---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 34688899999998 99999999999999976432 122 3578888899999999999999999999987653221
Q ss_pred HHHHcCcHHHHHHHhcC---------------CCchhHHHHHHHHHHHhCCh-hcHH-----------------------
Q 046850 556 SVVVAGAVPLLIELLMD---------------DKAGITDDALAVLALLLGCR-EGLE----------------------- 596 (686)
Q Consensus 556 ~iv~~G~v~~Ll~lL~~---------------~~~~v~~~al~~L~nLa~~~-~~~~----------------------- 596 (686)
... ...++.++.+|.+ .++-.+...+.+|..++..+ +...
T Consensus 215 ~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 215 AHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 111 2567777776642 24556666677777766532 1100
Q ss_pred ------HHHhC--------CCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHH
Q 046850 597 ------EIRKC--------RVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLK 662 (686)
Q Consensus 597 ------~i~~~--------~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~ 662 (686)
.+... .+ +..|..++.+.++.+|..|+..|..++... +. .+.. ..+.++..+.+.+..
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~a-~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p~---~~~~---~~~~i~~~l~d~d~~ 365 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVLA-INILGRFLLNNDKNIRYVALTSLLKTVQTD-HN---AVQR---HRSTIVDCLKDLDVS 365 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHHH-HHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-HH---HHGG---GHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHH-HHHHHHHHhCCCCchHHHHHHHHHHHHhhC-HH---HHHH---HHHHHHHHccCCChh
Confidence 01110 12 456667777777788888888888887653 21 2211 366788888888999
Q ss_pred HHHHHHHHHHHHHh
Q 046850 663 ARRKADALLRLLNR 676 (686)
Q Consensus 663 ~k~~A~~lL~~l~~ 676 (686)
+|++|..+|..+.+
T Consensus 366 Ir~~alelL~~l~~ 379 (618)
T 1w63_A 366 IKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcc
Confidence 99999988877644
No 122
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.31 E-value=3.3e-07 Score=71.43 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=42.6
Q ss_pred CCCcccccCcccCcCceEc--cCccc-ccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRDPVIV--ASGHT-YDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~--~cght-~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.++..|+||++...+++++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3566899999999999987 99999 899999999976 678999999874
No 123
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.31 E-value=1.2e-05 Score=95.20 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=184.9
Q ss_pred hhHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhCchh-H--HHHHHhCCHHHHHHhhcCC--CHHHHHHHHHHhhcccccc
Q 046850 394 MTAEFLVGKLAMG-SPEIQSQAAYELRLLAKTGMDN-R--RIIAEAGAIPFLVTLLSSH--DPRIQENAVTALLNLSIFD 467 (686)
Q Consensus 394 ~~i~~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~-r--~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~ 467 (686)
..++.|+..+.++ ++..+..|+..+..++..-... + ... ...+++.+...+.++ +..++..|+.+|.++...-
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999888 8999999999999998742211 1 000 123567777777776 8999999999998864211
Q ss_pred -cc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--hhhHhhcCCCcHHHHHHhcccCChHHHHHHHHH
Q 046850 468 -NN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD--CKVMIGGRPRAIPALVGLLREGTTAGKKDAATA 543 (686)
Q Consensus 468 -~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~a 543 (686)
.+ .........++.+...+.++ +.++|..++.+|..+..... ....+. ...++.+...+.+.+..++..|+.+
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEF 289 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11 00011123566677777777 89999999999999875432 122221 1577778888888889999999999
Q ss_pred HHHhcCCCCc-----------------HHHHHHcCcHHHHHHHhcCC-------CchhHHHHHHHHHHHhCChhcHHHHH
Q 046850 544 LFNLAVYNAN-----------------KASVVVAGAVPLLIELLMDD-------KAGITDDALAVLALLLGCREGLEEIR 599 (686)
Q Consensus 544 L~nLs~~~~~-----------------~~~iv~~G~v~~Ll~lL~~~-------~~~v~~~al~~L~nLa~~~~~~~~i~ 599 (686)
+..++..... ...-.-..+++.++..|... +..++..+..+|..++..-.. .++
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~ 367 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH
Confidence 9988764211 10111145677888877542 346788888999988863211 111
Q ss_pred hCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 600 KCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 600 ~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
. .. ++.+.+.+.+.+...|+.|+.+|..++....+........ .+++.|+..+.+.++.+|..+.++|..+..+
T Consensus 368 ~-~l-~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 368 E-PV-LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp H-HH-HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HH-HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 1 12 5566666777788899999999999997654333233222 3688899999999999999999888777665
No 124
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.27 E-value=5.5e-07 Score=111.35 Aligned_cols=271 Identities=12% Similarity=0.107 Sum_probs=185.6
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..+..|+..+.+.+.+++..|+..|.+....+...-..-.....++.|+..|.++++.+|..|+.+|.+++..... ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 3567888899999999999999999887653211000001123578889999999999999999999998864322 11
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhh------hHhhcCCCcHHHHHHhcc-cCChHHHHHHHHHHHH
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCK------VMIGGRPRAIPALVGLLR-EGTTAGKKDAATALFN 546 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~------~~i~~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~n 546 (686)
. ...++.++..|.++ +..+|..|+.+|..++..-... ..-.. ...+|.|+..+. ++++.++..|+.+|..
T Consensus 84 ~-~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp H-HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 1 23567788888777 7788999999998886433211 01112 458899999998 4778999999999999
Q ss_pred hcCCCC--cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcC-ChHHHHHH
Q 046850 547 LAVYNA--NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFG-SAKGKENS 623 (686)
Q Consensus 547 Ls~~~~--~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~-s~~~ke~A 623 (686)
++...+ .... -..+++.++..|.+++..++..|+.+|..++...... +. ... ++.+++.+... +...+..+
T Consensus 161 ~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~-l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 161 MLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDL-IEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTH-HHHHHHHHHHTCSSCSCTTH
T ss_pred HHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHH-HHHHHHHhccCCchhHHHHH
Confidence 985321 1111 1345667777778888899999999999998743321 11 123 78888877653 34566677
Q ss_pred HHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 046850 624 ITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRCC 678 (686)
Q Consensus 624 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~~ 678 (686)
+.++..++...+......+ ..+++.++..+.+.++.+|+.|..++..+.+..
T Consensus 235 ~~~l~~l~~~~~~~~~~~l---~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIGEYL---EKIIPLVVKFCNVDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHSSGGGTTSC---TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence 8888888765433221111 347899999998888889998888877766543
No 125
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.26 E-value=4.7e-07 Score=70.31 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=41.5
Q ss_pred CcccccCcccCcCceEc--cCccc-ccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 283 EFRCPISLDLMRDPVIV--ASGHT-YDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~--~cght-~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
+..|+||++..++++++ +|||. ||..|+.+|+.. ...||.||+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 45899999999999988 99998 999999999976 588999999874
No 126
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.25 E-value=4.7e-06 Score=90.85 Aligned_cols=265 Identities=10% Similarity=-0.002 Sum_probs=178.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC--CHHHHHHHHHHhhcccccccc--HH
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH--DPRIQENAVTALLNLSIFDNN--KI 471 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLs~~~~~--k~ 471 (686)
+..++..+.+++.++|..|-..|..+...+ ..+++..|+.++.+. +..++..|+.+|.|+...... ..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 345566677889999999999998866521 134667788888764 688999999999998643211 00
Q ss_pred -------HH---HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC--ChHHHHH
Q 046850 472 -------LI---MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG--TTAGKKD 539 (686)
Q Consensus 472 -------~i---~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~ 539 (686)
.+ ....+-..++..|.++ +..+ ..++.++..++..+.... .. .+.+|.|+..+.++ ++..+..
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~--~w-~~ll~~L~~~l~~~~~~~~~r~~ 149 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVN--QW-PELIPQLVANVTNPNSTEHMKES 149 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGT--CC-TTHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhcccc--cc-HHHHHHHHHHhccCCCCHHHHHH
Confidence 00 0112334467777776 5556 778888888876542211 23 67999999999988 8899999
Q ss_pred HHHHHHHhcCCC-CcHHHHHHcCcHHHHHHHhcCC--CchhHHHHHHHHHHHhCChhcH--HHHHhCCCChHHHHHHHhc
Q 046850 540 AATALFNLAVYN-ANKASVVVAGAVPLLIELLMDD--KAGITDDALAVLALLLGCREGL--EEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 540 Al~aL~nLs~~~-~~~~~iv~~G~v~~Ll~lL~~~--~~~v~~~al~~L~nLa~~~~~~--~~i~~~~~~i~~Lv~lL~~ 614 (686)
|+.+|..++..- +....-.-..+++.++..|.+. +..++..|+.++.++...-... ......-. ++.+.+.+.+
T Consensus 150 al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~ 228 (462)
T 1ibr_B 150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFI-MQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHhcCC
Confidence 999999998632 1110111124677888888776 6889999999999986532110 00011112 5666666777
Q ss_pred CChHHHHHHHHHHHHhhccChHHHHHHHHcCC-CChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 615 GSAKGKENSITLLLGLCKDGGEEVARRLLINP-RSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 615 ~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~-g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
.++.++..++.+|..++...+......+ . ++++.++..+.+.++.++..|.+.+..+.+.
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 7889999999999999876533221111 2 5677777788888999999988877766543
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.23 E-value=2.5e-05 Score=77.89 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=137.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhCchhH-HHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccccccHHHHHh
Q 046850 398 FLVGKLAMGSPEIQSQAAYELRLLAKTGMDNR-RIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNNKILIMA 475 (686)
Q Consensus 398 ~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 475 (686)
.+.+.+.+.++..+..|+..|..+....+... ..+ ..+++.|...+. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35677889999999999999999987633211 000 134677888884 89999999999999999854222111112
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC-Cc-
Q 046850 476 AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN-AN- 553 (686)
Q Consensus 476 ~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~-~~- 553 (686)
...++.|+..+.+. +..+|..|..+|.++..... + ..+++.|...+++.++.++..++.+|..+.... +.
T Consensus 97 ~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS----L---EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 34789999999998 89999999999999976432 1 346888999999999999999999999965442 21
Q ss_pred -HHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 554 -KASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 554 -~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
-...+ ..+++.|+.+|.+.+..++..|..++..++.
T Consensus 169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 2578999999999999999999999999975
No 128
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.20 E-value=9.3e-07 Score=76.14 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=39.2
Q ss_pred CCcccccCcccCcCc-----------------e-EccCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 282 DEFRCPISLDLMRDP-----------------V-IVASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 282 ~~~~Cpic~~~m~dP-----------------v-~~~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
++-.|+||++.|.+| + .++|||.|+..||.+|+.. +.+||.|++.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence 345799999988876 3 3599999999999999987 88999999875
No 129
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.3e-06 Score=67.42 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=40.3
Q ss_pred CCCCcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
-.++..|+||++...++|+++|||. ||..|+.. ...||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3457899999999999999999999 99999984 5789999998754
No 130
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.12 E-value=4.7e-07 Score=73.73 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=39.5
Q ss_pred CCCcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
.++..|+||++.+.+||.++|||. ||..|+.+| ..||.|+..+..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 345689999999999999999999 999999877 389999998753
No 131
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.10 E-value=9.7e-06 Score=100.20 Aligned_cols=229 Identities=13% Similarity=0.093 Sum_probs=161.3
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccH---
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNK--- 470 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k--- 470 (686)
..++.|++.|.+.++++|..|+.+|..++..-.+ ..+ ..+++.|+..|.++++.++..|+.+|..++..-...
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4677888999989999999999999999874433 111 235778888888888899999999998887543221
Q ss_pred ---HHHHhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHH
Q 046850 471 ---ILIMAAGAIDSIIEVLQS-GKTMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLLREGTTAGKKDAATAL 544 (686)
Q Consensus 471 ---~~i~~~g~l~~Lv~lL~~-~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 544 (686)
..-.....++.|+..+.+ + +...+..|+.+|.+++... .....+ ...++.|+..|.++++.++..|+.+|
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~---~~ll~~l~~~L~~~~~~vR~~a~~al 199 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH---PSILTCLLPQLTSPRLAVRKRTIIAL 199 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH---HHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 111234578899999984 5 8899999999999987421 111111 34677888888888899999999999
Q ss_pred HHhcCCCCcHHHHHHcCcHHHHHHHhcCC-CchhHHHHHHHHHHHhCChhcHHHHHh-CCCChHHHHHHHhcCChHHHHH
Q 046850 545 FNLAVYNANKASVVVAGAVPLLIELLMDD-KAGITDDALAVLALLLGCREGLEEIRK-CRVLVPLLIDLLRFGSAKGKEN 622 (686)
Q Consensus 545 ~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~-~~~v~~~al~~L~nLa~~~~~~~~i~~-~~~~i~~Lv~lL~~~s~~~ke~ 622 (686)
..++...+... -...++.+++.|... +...+..++.++..++.... . .+.. ...++|.+...+...++.+|+.
T Consensus 200 ~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 200 GHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99997654321 234688888888543 34566677888888875211 1 1111 1223788888887778889999
Q ss_pred HHHHHHHhhccCh
Q 046850 623 SITLLLGLCKDGG 635 (686)
Q Consensus 623 A~~~L~~L~~~~~ 635 (686)
++.++..++...+
T Consensus 275 a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 275 CIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCh
Confidence 9988888877543
No 132
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.06 E-value=1.6e-05 Score=79.19 Aligned_cols=183 Identities=14% Similarity=0.092 Sum_probs=134.4
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccC-chhhhHhhcCCCcHHHHHHhcc-cCChHHHHHHHHHHHHhcCCCCcHHHHH
Q 046850 481 SIIEVLQSGKTMEARENAAATIFSLSMI-DDCKVMIGGRPRAIPALVGLLR-EGTTAGKKDAATALFNLAVYNANKASVV 558 (686)
Q Consensus 481 ~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~~~~~iv 558 (686)
.+.+.+.+. +...|..|+..|..+... +.... .....+++.|..++. +.+..++..|+.+|..|+..-...-.-.
T Consensus 19 ~l~~~l~s~-~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLEEK-KWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHTCS-SHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhccC-CHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 367778777 999999999999998765 22111 111346888888894 8899999999999999995432111112
Q ss_pred HcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHH-
Q 046850 559 VAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEE- 637 (686)
Q Consensus 559 ~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~- 637 (686)
-..+++.|+..+.+.+..+++.|..+|.+++..... . . +++.|...+++.++.+|+.++.+|..+....++.
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~-ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----A-QQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----H-HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----H-HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 234789999999999999999999999999874321 1 1 2788888888889999999999999965432221
Q ss_pred -HHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 638 -VARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 638 -~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
....+- .++|.|+.++.+.++++|..|...+..+..
T Consensus 169 ~~~~~l~---~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK---LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH---HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 112222 258999999999999999999887776644
No 133
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.05 E-value=8.3e-07 Score=92.88 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=41.4
Q ss_pred CCCCcccccCcccCcCceEccCccc-ccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHT-YDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght-~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
+.+++.||||++.+.+||.++|||+ ||+.|+.+| ..||.|+..+..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3567899999999999999999999 999999988 689999998753
No 134
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.02 E-value=0.00029 Score=68.05 Aligned_cols=223 Identities=16% Similarity=0.115 Sum_probs=165.5
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccccc--HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hhh
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN--KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-CKV 513 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~ 513 (686)
.+..|.++|...|+.++.+|+.+|.++-..-+. +..+++ ..++.++.++++. +..+...|+.+|..|-.+-+ ...
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence 466789999999999999999999999876434 333444 4799999999998 99999999999999976553 344
Q ss_pred HhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChh
Q 046850 514 MIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCRE 593 (686)
Q Consensus 514 ~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~ 593 (686)
.+.. ++..|.+++.++++-....|+..|..|......+ +++..+..++.+.+..++..++.+|.+++...+
T Consensus 112 ~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4433 6889999999999999999999999994333222 345678888888999999999999999987433
Q ss_pred cHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccCh-HHHHHHHHcCCCChHHHHHHH-hcCCHHHHHHHHHHH
Q 046850 594 GLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGG-EEVARRLLINPRSIPSLQSLT-TDGSLKARRKADALL 671 (686)
Q Consensus 594 ~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll-~~~~~~~k~~A~~lL 671 (686)
...- + .+. +.-+-.+|++.++.+++.|..+|..+.+..= ++....+.. +....-.+. ..|.|..+.+|...-
T Consensus 183 D~~i-~-~~I-~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 183 DSGH-L-TLI-LDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK---ISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp SCCC-G-GGT-TTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH---HHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred CHHH-H-HHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH---HHHHHHHHHHhcCChhHHHHHHHHH
Confidence 2211 1 123 5667788999999999999999999887531 122222222 233333455 678999999998776
Q ss_pred HHHHh
Q 046850 672 RLLNR 676 (686)
Q Consensus 672 ~~l~~ 676 (686)
..+..
T Consensus 257 ~~le~ 261 (265)
T 3b2a_A 257 DLIDS 261 (265)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 135
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.01 E-value=1.3e-06 Score=78.42 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=93.1
Q ss_pred hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH
Q 046850 435 AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM 514 (686)
Q Consensus 435 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~ 514 (686)
...++.++.+|+++++.++..|+.+|.++.. ..++.|+..|+++ +..+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-------
Confidence 4567889999999999999999999988743 1368899999987 99999999999988752
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHH
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLAL 587 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~n 587 (686)
..+++.|+.+|.++++.++..|+++|.++.. ..+++.|..+|.+++..++..|+.+|..
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999999999852 3468889999988888999988888764
No 136
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.94 E-value=0.00047 Score=78.58 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=173.8
Q ss_pred hhhhHHHHHHHh--hcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc
Q 046850 392 VKMTAEFLVGKL--AMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 392 ~~~~i~~Lv~~L--~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
.+..++.+.+.| .+.++.++..|+.++..+...+++.-. ..+.++.+..+|.+.|+.++..|+.+|..++.++..
T Consensus 144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 345667788888 788999999999999999886654322 247899999999999999999999999998764432
Q ss_pred HHHHHhcCcHHHHHHHHc----CC-C-----------CHHHHHHHHHHHHHhccCc--hhhhHhhcCCCcHHHHHHhcc-
Q 046850 470 KILIMAAGAIDSIIEVLQ----SG-K-----------TMEARENAAATIFSLSMID--DCKVMIGGRPRAIPALVGLLR- 530 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~----~~-~-----------~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~- 530 (686)
.+ ...++.++..|. .+ . ++-.+.....+|..++..+ +.+..+.+ .++.++..+.
T Consensus 221 --~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~---~L~~il~~~~~ 293 (621)
T 2vgl_A 221 --EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE---CLETILNKAQE 293 (621)
T ss_dssp --HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH---HHHHHHHHHHS
T ss_pred --HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHhhcc
Confidence 11 123444444433 22 1 3567888888888887643 33333332 4555554331
Q ss_pred --------cCCh--HHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHh
Q 046850 531 --------EGTT--AGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRK 600 (686)
Q Consensus 531 --------~~~~--~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~ 600 (686)
+.+. .+...|+.++..+...++.. ..++..|..+|.+.++.++-.|+..|..++........+ .
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~ 367 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K 367 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H
T ss_pred CcccccccccchHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H
Confidence 1222 77888999999986322111 135677888888888899999999999998754222232 2
Q ss_pred CCCChHHHHHHHh-cCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 601 CRVLVPLLIDLLR-FGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 601 ~~~~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
.- .+.++..++ +.+..++..|+.+|..++.. .. ... ++.-|...+...+...++.+...+..+
T Consensus 368 -~~-~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~N-v~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 368 -TH-IETVINALKTERDVSVRQRAVDLLYAMCDR--SN-AQQ------IVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp -TT-HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HH-HHH------HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hh-HHH------HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23 677888888 78889999999999999965 22 222 255667777777777776665544444
No 137
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.4e-05 Score=78.61 Aligned_cols=188 Identities=7% Similarity=0.065 Sum_probs=136.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHH-HHhhCchhHHHHHH-hCCHHHHHHhh-cCCCHHHHHHHHHHhhccccccc--cHH-HH
Q 046850 400 VGKLAMGSPEIQSQAAYELRL-LAKTGMDNRRIIAE-AGAIPFLVTLL-SSHDPRIQENAVTALLNLSIFDN--NKI-LI 473 (686)
Q Consensus 400 v~~L~s~~~~~q~~al~~L~~-La~~~~~~r~~i~~-~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~--~k~-~i 473 (686)
-+.+.+.++..+..|+..|.. +..+.+.....-.+ ..++..|...+ +..+..++..|+.+|..|+..-. .-. ..
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 456789999999999999999 87543321100001 12466777888 67899999999999999985332 111 11
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh-hhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDC-KVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
. .-.++.++..+++. ...++..+..+|-.++..-+. ... ..-..+++.|+..|++.++.++..++.+|..+.....
T Consensus 102 ~-~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 102 V-SLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp H-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred H-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 23688999999988 788999999888888764211 111 0013478899999999999999999999999986554
Q ss_pred cH-HH---HHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 553 NK-AS---VVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 553 ~~-~~---iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
.. .. .+...++|.|.+++.+.+..++..|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 31 22 2225789999999999999999999999999875
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=1.2e-06 Score=78.75 Aligned_cols=120 Identities=22% Similarity=0.181 Sum_probs=92.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..++.++..|++.++.++..|++.|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 356788889998888889888887765421 136899999999999999999999999863
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
..+++.|+..|+++ +..+|..|+++|.++. . ..+++.|+.+++++++.++..|+.+|.++
T Consensus 72 --~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 23588999999888 8899999999999874 2 45789999999988999999999998653
No 139
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.89 E-value=0.0005 Score=78.34 Aligned_cols=254 Identities=12% Similarity=0.098 Sum_probs=176.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh--cCCCHHHHHHHHHHhhccccccccHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL--SSHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL--~s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
..+..+.+.|.++++.++--|++.|..+.. ++ +++ ..+|.+..+| .+.++-++..|+.++.++....+.
T Consensus 111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-- 181 (621)
T 2vgl_A 111 LINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-- 181 (621)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--
Confidence 467788889999999999999999988853 22 222 3678888999 889999999999999998764332
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc----cC-------------Ch
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR----EG-------------TT 534 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~-------------~~ 534 (686)
.+-..+.++.+.++|.+. +..++.+|+.+|..++..+.. .+ ...+|.+++.|. .+ ++
T Consensus 182 ~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~ 255 (621)
T 2vgl_A 182 LVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255 (621)
T ss_dssp GCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred hcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence 111247899999999887 899999999999999865432 11 235555555443 22 57
Q ss_pred HHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHHHHhcC-C----------CchhHHHHHHHHHHHhCChhcHHHHHhC
Q 046850 535 AGKKDAATALFNLAVYNA--NKASVVVAGAVPLLIELLMD-D----------KAGITDDALAVLALLLGCREGLEEIRKC 601 (686)
Q Consensus 535 ~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll~lL~~-~----------~~~v~~~al~~L~nLa~~~~~~~~i~~~ 601 (686)
-++...+..|..++..++ .+..+.+ .+..++..+.+ + ...+.-+|+.++..+...++-..
T Consensus 256 w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~----- 328 (621)
T 2vgl_A 256 WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV----- 328 (621)
T ss_dssp HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----
Confidence 788888888888876432 2333322 33344433321 1 22677788888888864443222
Q ss_pred CCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHh-cCCHHHHHHHHHHHHHHH
Q 046850 602 RVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTT-DGSLKARRKADALLRLLN 675 (686)
Q Consensus 602 ~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~~~~~~k~~A~~lL~~l~ 675 (686)
.+ +..|..++.+.++.+|-.|+..|..++...+. ...+.. ..+.++..+. +.+..+|++|..+|..+-
T Consensus 329 ~~-~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~---~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 329 RA-CNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKT---HIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp HH-HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHT---THHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HH-HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHH---HHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 23 67888899888899999999999999977531 122222 3677777777 888889988888776553
No 140
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=2.2e-05 Score=63.77 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=42.1
Q ss_pred CCCCcccccCcccC--cCceEccCc-----ccccHHhHHHHHhhC-CCCCCCCCccccC
Q 046850 280 IPDEFRCPISLDLM--RDPVIVASG-----HTYDRNSIAQWINSG-HHTCPKSGQRLIH 330 (686)
Q Consensus 280 ~~~~~~Cpic~~~m--~dPv~~~cg-----ht~cr~ci~~w~~~~-~~~CP~c~~~l~~ 330 (686)
..++..|+||++-+ .+|++.+|+ |.|.+.||.+|+... ..+||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999766 478888996 999999999999873 4799999998754
No 141
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.80 E-value=3.1e-06 Score=73.87 Aligned_cols=45 Identities=18% Similarity=0.479 Sum_probs=0.4
Q ss_pred CcccccCcccCcCce-----------------E-ccCcccccHHhHHHHHhhCCCCCCCCCccc
Q 046850 283 EFRCPISLDLMRDPV-----------------I-VASGHTYDRNSIAQWINSGHHTCPKSGQRL 328 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv-----------------~-~~cght~cr~ci~~w~~~~~~~CP~c~~~l 328 (686)
+-.|+||++.|.+|. . .+|||.|+..||.+|+.. +.+||.|++.+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 110 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence 348999999987742 2 389999999999999987 78999999875
No 142
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.75 E-value=0.0015 Score=77.08 Aligned_cols=263 Identities=19% Similarity=0.164 Sum_probs=177.8
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCch--hHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMD--NRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~--~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
+.+..|.+.+...... ..|+..+..++..... .-+.+ --+.+|.++..+......++..|..++..+...-.. .
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~-~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP-V 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG-G
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH-H
Confidence 3555666666543222 7788888888853321 11111 125788888888888888988888777666532111 1
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.+ ...+|.|+..|.+......+..|+.++..|+.....+....- ...||.+.+.+.+-.+++++.|..++..+|..=
T Consensus 130 a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 130 AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 11 346888999998765799999999999999865422211111 458888888888888999999999999999766
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCCh------hcHHHHHhCCCChHHHHHHHhcCChHHHHHHHH
Q 046850 552 ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCR------EGLEEIRKCRVLVPLLIDLLRFGSAKGKENSIT 625 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~------~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~ 625 (686)
+|+.. ...+|.|++.+.+++. +.+ ++..|+.+. ...-++ ++|.|.+=|...+...+..++.
T Consensus 207 ~n~d~---~~~~~~~~~~~~~p~~--~~~---~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~ 273 (986)
T 2iw3_A 207 DNKDI---ERFIPSLIQCIADPTE--VPE---TVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAV 273 (986)
T ss_dssp CCTTT---GGGHHHHHHHHHCTTH--HHH---HHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHH
T ss_pred CCcch---hhhHHHHHHHhcChhh--hHH---HHHHhhcCeeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEE
Confidence 65544 3568999999987732 333 455554321 111111 2566766666678889999999
Q ss_pred HHHHhhccCh-HHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHhcc
Q 046850 626 LLLGLCKDGG-EEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNRCC 678 (686)
Q Consensus 626 ~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~~~ 678 (686)
++-|||.--. +..+..+. ..++|.|......- +|++|..|...+..|.+..
T Consensus 274 ~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 274 IIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 9999998433 33333333 55788888876655 9999999999999987753
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.66 E-value=0.00089 Score=68.64 Aligned_cols=177 Identities=13% Similarity=0.084 Sum_probs=134.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIM 474 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~ 474 (686)
.+..+++.|.+++.+..+.++..|+.+...+...-..|+..+++..|+.+....+...+.+++++|.+|-.+..+..-++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 35667788888899999999999998555578888889999999999999999999999999999999988877766666
Q ss_pred -hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hhhHhhc---------CCCcHHHHHHhcc---cCChHHHHHH
Q 046850 475 -AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-CKVMIGG---------RPRAIPALVGLLR---EGTTAGKKDA 540 (686)
Q Consensus 475 -~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~---------~~g~i~~Lv~lL~---~~~~~~~~~A 540 (686)
....|..+..++.+. ...+...|..+|..++.+++ +...+.. ...-++.|+.+|. .++.+++.+|
T Consensus 199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 456888899999976 89999999999999988774 2222221 0123779999997 6788999998
Q ss_pred HHHHHHhcCCCCc---HHHHH----HcCcHHHHHHHhcC
Q 046850 541 ATALFNLAVYNAN---KASVV----VAGAVPLLIELLMD 572 (686)
Q Consensus 541 l~aL~nLs~~~~~---~~~iv----~~G~v~~Ll~lL~~ 572 (686)
...|-.+....+. +..++ +.|+-..+.+.+..
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 8887776655443 22333 23444455555544
No 144
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00054 Score=68.59 Aligned_cols=190 Identities=10% Similarity=0.078 Sum_probs=132.2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHH-hccCc-hhhhHhhcCCCcHHHHHHhc-ccCChHHHHHHHHHHHHhcCCC---CcH-
Q 046850 482 IIEVLQSGKTMEARENAAATIFS-LSMID-DCKVMIGGRPRAIPALVGLL-REGTTAGKKDAATALFNLAVYN---ANK- 554 (686)
Q Consensus 482 Lv~lL~~~~~~e~~~~aa~~L~~-Ls~~~-~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~Al~aL~nLs~~~---~~~- 554 (686)
+...+.+. +...|..|+..|.. +.... ............+..|...+ ++.+..++..|+.+|..|+..- ...
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45566777 89999999999999 86431 11100111124677888888 6788899999999999999532 211
Q ss_pred HHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHh-CCCChHHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 555 ASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRK-CRVLVPLLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 555 ~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~-~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
... .-+++.++..+.+....+++.+..+|..++.+-.. ..... -..+++.|...+++.++.+|+.++.+|..++..
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 222 23688999999988889999999999998762210 00000 011367888888888999999999999998876
Q ss_pred ChH--HHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 634 GGE--EVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 634 ~~~--~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
.+. ......+. ..++|.|..++.+.++.+|..|..++-.+..
T Consensus 177 ~~~~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 542 22222221 2369999999999999999999887776644
No 145
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.60 E-value=0.0044 Score=72.40 Aligned_cols=237 Identities=16% Similarity=0.110 Sum_probs=162.3
Q ss_pred hHHHHHHHhhcCC--------HHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccc
Q 046850 395 TAEFLVGKLAMGS--------PEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIF 466 (686)
Q Consensus 395 ~i~~Lv~~L~s~~--------~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~ 466 (686)
.+..|...|.+.+ +.++..|+-.|.....++ .+. .+++.|..+|..++..+++.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS-~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS-ANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC-CCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC-CCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 3455666666444 456667777776655432 222 2467788888888777777777777766443
Q ss_pred cccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-CChHHHHHHHHHHH
Q 046850 467 DNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-GTTAGKKDAATALF 545 (686)
Q Consensus 467 ~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~ 545 (686)
..|.. ++..|+..+.+..+..++..++-.|.-+... . ...++.+++.|.. .++-++..++.++.
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~-~e~~~~li~~L~~~~dp~vRygaa~alg 567 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG--------R-QELADDLITKMLASDESLLRYGGAFTIA 567 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------C-GGGGHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------C-hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33322 3556666654444788898888888877544 2 5677888888764 56777888888877
Q ss_pred HhcCCCCcHHHHHHcCcHHHHHHHh-cCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHH-HhcCChHHHHHH
Q 046850 546 NLAVYNANKASVVVAGAVPLLIELL-MDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDL-LRFGSAKGKENS 623 (686)
Q Consensus 546 nLs~~~~~~~~iv~~G~v~~Ll~lL-~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~l-L~~~s~~~ke~A 623 (686)
.-....+|... |+.|++.+ .+.+..++..|+..|+.++.... .. ++.++++ ++++++.+|..|
T Consensus 568 lAyaGTGn~~a------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~-v~rlv~~L~~~~d~~VR~gA 632 (963)
T 4ady_A 568 LAYAGTGNNSA------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TT-VPRIVQLLSKSHNAHVRCGT 632 (963)
T ss_dssp HHTTTSCCHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SS-HHHHTTTGGGCSCHHHHHHH
T ss_pred HHhcCCCCHHH------HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HH-HHHHHHHHHhcCCHHHHHHH
Confidence 66666655433 55566666 45677889999999998875332 34 7888874 456889999999
Q ss_pred HHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 624 ITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 624 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
..+|..+|...+.. .++..|..++.+.++.+|+.|...|..+...
T Consensus 633 alALGli~aGn~~~---------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 633 AFALGIACAGKGLQ---------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHTSSSCCH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhccCCCcH---------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 99999998765321 1266777888888999999988888777543
No 146
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.50 E-value=0.00076 Score=72.55 Aligned_cols=232 Identities=14% Similarity=0.071 Sum_probs=156.9
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHhhCchhHHHHHHhC--CHHHHHHhhcC---------------C--CHHHHHHHH
Q 046850 398 FLVGKLAMG-SPEIQSQAAYELRLLAKTGMDNRRIIAEAG--AIPFLVTLLSS---------------H--DPRIQENAV 457 (686)
Q Consensus 398 ~Lv~~L~s~-~~~~q~~al~~L~~La~~~~~~r~~i~~~g--~i~~Lv~lL~s---------------~--~~~~~~~A~ 457 (686)
+++..|... +...+--++.+|..+.. .+++|..+.+.+ .+|.++.+++. + ..+++-+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 566667653 45667778999999988 688999888643 47777654431 1 356788999
Q ss_pred HHhhccccccccHHHHHhcCcH--HHHHHHHcCCCCHHHHHHHHHHHHHhccCc--h---hhh-HhhcCCCcHHHHHHhc
Q 046850 458 TALLNLSIFDNNKILIMAAGAI--DSIIEVLQSGKTMEARENAAATIFSLSMID--D---CKV-MIGGRPRAIPALVGLL 529 (686)
Q Consensus 458 ~aL~nLs~~~~~k~~i~~~g~l--~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~--~---~~~-~i~~~~g~i~~Lv~lL 529 (686)
-+++-||.+.+....+...+.. ..|+.+++....+.+...+.++|.||.... + ... .+.. .++ +.+++.|
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHH
Confidence 9999999988777777766643 677888887768899999999999998765 1 112 2222 334 4555665
Q ss_pred cc---CChHHHHHHHHHHH-------HhcCC--------------CC-cH-HHHHHc----------CcHHHHHHHhcC-
Q 046850 530 RE---GTTAGKKDAATALF-------NLAVY--------------NA-NK-ASVVVA----------GAVPLLIELLMD- 572 (686)
Q Consensus 530 ~~---~~~~~~~~Al~aL~-------nLs~~--------------~~-~~-~~iv~~----------G~v~~Ll~lL~~- 572 (686)
.. .++++..+--...- .|++. .+ .+ ..+-.. .++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 54 24444443222222 22211 11 11 122221 247889999963
Q ss_pred ---------CCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhcc
Q 046850 573 ---------DKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 573 ---------~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
.++.+..-||.=++.+++ +|.||..+-+.|+ =..+++++.+.+++++.+|+.++..+..+
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~-K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG-KADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH-HHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc-HHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 356677777888888886 8999998888887 77888899999999999999988766543
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.42 E-value=0.0026 Score=65.20 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=121.5
Q ss_pred HHHHhcccCChHHHHHHHHHHHH-hcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCC
Q 046850 524 ALVGLLREGTTAGKKDAATALFN-LAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCR 602 (686)
Q Consensus 524 ~Lv~lL~~~~~~~~~~Al~aL~n-Ls~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~ 602 (686)
.+++-|.+++.+.++.++.-|.. +..+......++..+++..|+......+......++++|.+|-.+..|...++.+.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 33455566778889999999998 66677899999999999999999988899999999999999999999999999876
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHHHHhhccChHH---HHHHH---Hc--CCCChHHHHHHHh---cCCHHHHHHHHHHH
Q 046850 603 VLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEE---VARRL---LI--NPRSIPSLQSLTT---DGSLKARRKADALL 671 (686)
Q Consensus 603 ~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~---~~~~l---~~--~~g~i~~L~~Ll~---~~~~~~k~~A~~lL 671 (686)
.+|..|..++.+....+...|.++|..+|..+... +.+++ .. +....+.|+.+++ +++...+.+|..++
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 55888999998878889999999999999876311 11111 11 1124778899997 67889999988877
Q ss_pred HHHH
Q 046850 672 RLLN 675 (686)
Q Consensus 672 ~~l~ 675 (686)
.-+-
T Consensus 282 N~lL 285 (339)
T 3dad_A 282 NKTL 285 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 148
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.047 Score=50.72 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=148.5
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhccccccccHH
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFDNNKI 471 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~~~k~ 471 (686)
+..+..+++.|...-+.+|..|+..+..+++.-++.-.-+ +..|+-+++ ++..........+++.++.-.+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 3567888999998889999999999999998776655543 345566654 5666666667778888875322
Q ss_pred HHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 472 LIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 472 ~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.++. +.+|.+..-+.-| ++.++.+...+|..+.... -..+ .+++.-+..++.+.+..-+..|+..+..|..+
T Consensus 103 e~v~-~vVp~lfanyrig-d~kikIn~~yaLeeIaran--P~l~---~~v~rdi~smltskd~~Dkl~aLnFi~alGen- 174 (253)
T 2db0_A 103 ELVK-SMIPVLFANYRIG-DEKTKINVSYALEEIAKAN--PMLM---ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN- 174 (253)
T ss_dssp HHHH-HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHC--HHHH---HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-
T ss_pred HHHH-hhHHHHHHHHhcC-CccceecHHHHHHHHHHhC--hHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-
Confidence 2222 2566666666778 9999999999999987753 2233 33677788899988866666666666655443
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-ChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 552 ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
..+-+ ...+|.|..+|.+.+.-++..|+.+|.+||. ++.-|.. +...++-+...|..++......|..+
T Consensus 175 --~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki-------i~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 175 --SFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV-------VIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp --THHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH-------HHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred --Ccccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH-------HHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 33322 3568899999999999999999999999997 4443433 22333344456777777666666655
Q ss_pred hc
Q 046850 631 CK 632 (686)
Q Consensus 631 ~~ 632 (686)
..
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.26 E-value=0.0044 Score=64.98 Aligned_cols=245 Identities=12% Similarity=0.055 Sum_probs=151.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHh
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMA 475 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~ 475 (686)
...+++.+.+.+.+.++-.--.+..+++..++.- + ++..|.+=+.++++-++-.|+.+|+++...+ +++
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i--L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~~ 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI--I----VTSSLTKDMTGKEDSYRGPAVRALCQITDST-----MLQ 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG--G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----THH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH--H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HHH
Confidence 3445678889999998888888888887533321 2 5677888888999999999999999997533 122
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHH
Q 046850 476 AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKA 555 (686)
Q Consensus 476 ~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~ 555 (686)
...+.+.+.|.+. ++-+|..|+-+...|..... +.+ .+.++.+-+++.+.++-+...|+.+|..+...+. .
T Consensus 139 -~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~p--e~v---~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~ 209 (355)
T 3tjz_B 139 -AIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSF--DVV---KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L 209 (355)
T ss_dssp -HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCH--HHH---HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H
T ss_pred -HHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCH--HHH---HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H
Confidence 2566677888888 99999999999998876542 222 3589999999999999999999999999987652 1
Q ss_pred HHHHcCcHHHHHHHhcCC---CchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhc
Q 046850 556 SVVVAGAVPLLIELLMDD---KAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCK 632 (686)
Q Consensus 556 ~iv~~G~v~~Ll~lL~~~---~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~ 632 (686)
++..|+.-+... ++-.+-..++++..++..++.. ....+++.|..+|++.++.+.-.|+.++..+..
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 334455555442 2222222333333333322001 111225666667788888999999999888765
Q ss_pred cChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 633 DGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 633 ~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
.. .. .+ ..++..|..++.+.++.+|--|...|..+...
T Consensus 280 ~~-~~---~~---~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 280 CS-AK---EL---APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred CC-HH---HH---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 32 11 11 22467777788888777776666555554443
No 150
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.00068 Score=53.82 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCcccccCcccCcCceEc-cCcccccHHhHHHHHhhC-CCCCCCCCcccc
Q 046850 282 DEFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINSG-HHTCPKSGQRLI 329 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~~-~~~CP~c~~~l~ 329 (686)
..-.|+||.+++..-..- .|+|.|=..||.+||+.. ..+||.|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 446899999988644332 899999999999999873 379999998764
No 151
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.13 E-value=0.0036 Score=65.66 Aligned_cols=238 Identities=11% Similarity=0.082 Sum_probs=133.0
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
..+..+.+.+.++++-++-.|++.|..+... +.-. ...+.+-..|.+.++-++..|+-+...|...... +
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~ 173 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---V 173 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---H
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---H
Confidence 4567888999999999999999999988752 2222 2456677888899999999999999888654332 2
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC---ChHHHHHHHHHHHHhcCC
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG---TTAGKKDAATALFNLAVY 550 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~Al~aL~nLs~~ 550 (686)
++ +.++.+-+++.+. +.-+..+|.++|..+...+. .++..|+.-+..+ ++-..-.-+..+..++..
T Consensus 174 v~-~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 174 VK-RWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp HH-TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred HH-HHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence 22 6899999999888 88999999999999987541 1445555555443 344444444444333332
Q ss_pred CCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 551 NANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 551 ~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
++ .-.....++.+...|.+.+..++-+|+.++..+...+.. +. ..+ +..|..++.+.++.+|-.|+..|..+
T Consensus 243 d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a-~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 243 ED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APA-VSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp -----------------CCCCCSSHHHHHHHHHHHTC---------------C-CCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred cc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHH-HHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 20 012234556666777778889999999999888653321 22 233 67788889888999999999998888
Q ss_pred hccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHH
Q 046850 631 CKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKA 667 (686)
Q Consensus 631 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A 667 (686)
.... +...+. .-.-+.+++.+++-.....|
T Consensus 315 ~~~~-P~~v~~------~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 315 AMKH-PSAVTA------CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp -------------------------------------
T ss_pred HHHC-cHHHHH------HHHHHHHHccCCcHhHHHHH
Confidence 8764 222221 13445566666665555444
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.019 Score=53.35 Aligned_cols=214 Identities=15% Similarity=0.157 Sum_probs=145.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH
Q 046850 436 GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM 514 (686)
Q Consensus 436 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~ 514 (686)
.++..++.+|..+-..++.+|+.++.+++..-+. ... .+..|+.+++.......-...+.+++-++... ..
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PE 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HH
Confidence 3577888999888889999999999999864332 222 34455566554436677667777887776542 22
Q ss_pred hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhc
Q 046850 515 IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCREG 594 (686)
Q Consensus 515 i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~ 594 (686)
++ .+++|.+..=..-|++.++.+...+|..+...++.- -.+++.-+..+|++++..-+-.|+..+..+..+ +
T Consensus 104 ~v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~ 175 (253)
T 2db0_A 104 LV--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--S 175 (253)
T ss_dssp HH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--T
T ss_pred HH--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--C
Confidence 22 347788888788899999999999999998765422 224556678888877755555555555555432 1
Q ss_pred HHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 046850 595 LEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLL 674 (686)
Q Consensus 595 ~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l 674 (686)
-..+ ... +|.|..+|...+..++-.|+.+|.+++.-+ +..+..+ ..-++=+.+.++-++++....|..+
T Consensus 176 ~~yv--~Pf-LprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii-------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 176 FKYV--NPF-LPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVV-------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHH--GGG-HHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHH-------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cccc--Ccc-hHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHH-------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 1111 233 899999999999999999999999999886 4455543 2233344455666777776666555
Q ss_pred Hh
Q 046850 675 NR 676 (686)
Q Consensus 675 ~~ 676 (686)
--
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 153
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.06 E-value=0.051 Score=58.46 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=122.9
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhCch--hHHHH-HHhCCHH-HHH-HhhcCCCHHHHHHHHHHhhcccccc
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTGMD--NRRII-AEAGAIP-FLV-TLLSSHDPRIQENAVTALLNLSIFD 467 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~~~--~r~~i-~~~g~i~-~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~ 467 (686)
..+..+++.|+ ....++....+..+..+...++. .+..+ .+..... .+. .++..++.-.+..+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 45677888888 56788888888888888876651 33333 3332221 122 2444444555555555544443221
Q ss_pred ccHHHHHhcCcHH--HHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCC-cHHHHHHhccc-------------
Q 046850 468 NNKILIMAAGAID--SIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPR-AIPALVGLLRE------------- 531 (686)
Q Consensus 468 ~~k~~i~~~g~l~--~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g-~i~~Lv~lL~~------------- 531 (686)
..-....+ ..+. -++..|....+...+..++..|..|...+++|..+....| .++.++.+++.
T Consensus 157 ~~~~~~l~-~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 157 LHNVKLVE-KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp TCCHHHHH-HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CccHhHHH-HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 11111111 1122 3455566532456677899999999999999999876233 47777655431
Q ss_pred --C--ChHHHHHHHHHHHHhcCCCCcHHHHHHcCcH--HHHHHHhcC-CCchhHHHHHHHHHHHhCC
Q 046850 532 --G--TTAGKKDAATALFNLAVYNANKASVVVAGAV--PLLIELLMD-DKAGITDDALAVLALLLGC 591 (686)
Q Consensus 532 --~--~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v--~~Ll~lL~~-~~~~v~~~al~~L~nLa~~ 591 (686)
+ ..++...++-++|-|+..++....+...++. +.|+..+.. ....+.+-++.+|.|+...
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~ 302 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 302 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcc
Confidence 1 1366888999999999998877777777754 566666643 4567888888888888763
No 154
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.92 E-value=0.0087 Score=64.82 Aligned_cols=244 Identities=11% Similarity=0.036 Sum_probs=159.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchh--HHHHHHhCCHHHHHHhhc--C-----C---CHHHHHHHHHHhhc
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDN--RRIIAEAGAIPFLVTLLS--S-----H---DPRIQENAVTALLN 462 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~--r~~i~~~g~i~~Lv~lL~--s-----~---~~~~~~~A~~aL~n 462 (686)
..+.|+..|-++.+++|..|+-.||.+.+..... |..-......-.|+.+|. . . -..++|.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 5678888888999999999999999988755321 110000123334444332 1 1 25699999999998
Q ss_pred cccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHH
Q 046850 463 LSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAAT 542 (686)
Q Consensus 463 Ls~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~ 542 (686)
+ .+-+.. ..++..++..+..+ ..+++-.+.-.|.++ +..+..-.++++.++..|.+.+.+++..|+.
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSG-DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCC-CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 553332 34455555555666 899999999999999 2222212568889999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC-C-chhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHH
Q 046850 543 ALFNLAVYNANKASVVVAGAVPLLIELLMDD-K-AGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGK 620 (686)
Q Consensus 543 aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~-~-~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~k 620 (686)
+|.-++ .++.... ++..+...|.+. + ..-....+..|+.|+..+.. +-... .++|.|..++++.-..+|
T Consensus 322 tLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp-~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPP-ERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCS-GGGGGTGGGGTCSSHHHH
T ss_pred Hhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccCh-HHHHHHHhhhcCCcHHHH
Confidence 999999 3322222 344455555432 2 22334456778888765531 11112 348999999999999999
Q ss_pred HHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 046850 621 ENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLR 672 (686)
Q Consensus 621 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~ 672 (686)
..++.+|..+. . ...... .+..++-..++.+++.+..+.+
T Consensus 393 ~AVL~TL~tfL--~-~~~LRL---------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS--E-ESIDFL---------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC--C-HHHHHH---------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--h-hhHHHH---------HHHHHHhCCcHHHHHHHHHHHH
Confidence 99999998877 1 222121 2334666778888877766554
No 155
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.87 E-value=0.044 Score=64.70 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=153.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC-CHHHHHHHHHHhhccccccccHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH-DPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
.++.++..+......++..|-.++..+...-+.+.. ..++|.|+..|.+. ....+..|+.+|..|+... ..++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 567777777777888998888888877764433332 23689999988654 6899999999999998754 3444
Q ss_pred Hh--cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 474 MA--AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 474 ~~--~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.. ...+|.+.+.+-+. ..+++..|..++..+|..=.|++. ...||.|++.+.+++. .-.++..|..-+...
T Consensus 170 ~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE--VPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCS
T ss_pred HHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEe
Confidence 43 36777777777777 899999999999999876666654 4579999999987743 444555555444443
Q ss_pred CcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC---ChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHH
Q 046850 552 ANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG---CREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLL 627 (686)
Q Consensus 552 ~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~---~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L 627 (686)
+--...+ +=.+|.|.+-|......+..+++-++.|+|. +|.....++ ..++|.+-+.... ..|++|+.|..++
T Consensus 243 ~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~--~~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 243 EVTPATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL--GKLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp CCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH--TTTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred eecchhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh--hhhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 3111111 1135666666777788899999999999997 333233222 2236777776666 7899999887777
Q ss_pred HHh
Q 046850 628 LGL 630 (686)
Q Consensus 628 ~~L 630 (686)
..|
T Consensus 320 ~~l 322 (986)
T 2iw3_A 320 KTL 322 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 156
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.70 E-value=0.0011 Score=54.80 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=38.1
Q ss_pred ccccCcccCcCc-eEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 285 RCPISLDLMRDP-VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 285 ~Cpic~~~m~dP-v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
.|++|.-.+..- .+++|+|.||..|+..|...+..+||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 588888766543 366999999999999999888899999998864
No 157
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.57 E-value=0.27 Score=57.51 Aligned_cols=240 Identities=15% Similarity=0.062 Sum_probs=150.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh-cCCCHHHHHHHHHHhhccccccccHHHH
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL-SSHDPRIQENAVTALLNLSIFDNNKILI 473 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLs~~~~~k~~i 473 (686)
.++.|...|...+......|+..|..+..+. .|.. ++..|+..+ ...+..++..++..|+.+....
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~------ 539 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR------ 539 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC------
Confidence 4566666676666555556666666554422 2222 345565544 4567788888888888775432
Q ss_pred HhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc-cCChHHHHHHHHHHHHhcCCCC
Q 046850 474 MAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR-EGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 474 ~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
...++.+++.|....++-+|..++.++.--.....+ ..+|+.|++.+. +.+..++..|+.+|..+...++
T Consensus 540 --~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 540 --QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp --GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred --hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 346778888887654777787777766543333222 235666666654 4456889999999998876653
Q ss_pred cHHHHHHcCcHHHHHHHh-cCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHhh
Q 046850 553 NKASVVVAGAVPLLIELL-MDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 553 ~~~~iv~~G~v~~Ll~lL-~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
..++.++.+| .+.++.++..|..+|+.++........ +..|..++...+..++..|+.+|..+.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~a-------id~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSA-------IDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHH-------HHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHH-------HHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3466677655 457889999999999999764433332 667777887788999999999998887
Q ss_pred ccChHHHHHHHHcCCCChHHHHHHHhc--CCHHHHHHHHHHHHHH
Q 046850 632 KDGGEEVARRLLINPRSIPSLQSLTTD--GSLKARRKADALLRLL 674 (686)
Q Consensus 632 ~~~~~~~~~~l~~~~g~i~~L~~Ll~~--~~~~~k~~A~~lL~~l 674 (686)
...++.....+.. +...|.....+ .++.++-.|.-..-++
T Consensus 676 ~gtnna~~~rva~---~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 676 IQQTEKLNPQVAD---INKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TTCCTTTCTTHHH---HHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred cCCccccchHHHH---HHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 6543321011111 24445666654 3555665554444333
No 158
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.032 Score=56.37 Aligned_cols=184 Identities=13% Similarity=0.134 Sum_probs=123.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhCchhH--HHHH-Hh-CCHHHHHHhhcCCCHHHHHHHHHHhhcccccc---c-cH
Q 046850 399 LVGKLAMGSPEIQSQAAYELRLLAKTGMDNR--RIIA-EA-GAIPFLVTLLSSHDPRIQENAVTALLNLSIFD---N-NK 470 (686)
Q Consensus 399 Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r--~~i~-~~-g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~---~-~k 470 (686)
|-+.|.|.++..|..|+..|..+........ .... .. ..++.+-..+...|..++..|+.+|..+...- . .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4478999999999999999988776432211 1111 12 23556667888899999999999888775421 1 12
Q ss_pred H--HHHhcCcHHHHHHH-HcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 471 I--LIMAAGAIDSIIEV-LQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 471 ~--~i~~~g~l~~Lv~l-L~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
. ...-...++.|+.- |.++ ...++..+..++..+....... ..+++.+...+.+.++.++..++..|..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 2 22234567878765 6666 7888888888887775432111 12456667778889999999999999987
Q ss_pred cCC--CC--cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 548 AVY--NA--NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 548 s~~--~~--~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
... .. +....+ ..+++.+..+|.+.++.+++.|..++..+-.
T Consensus 167 l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 642 11 112111 2345567777889999999999999998865
No 159
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.51 E-value=0.0026 Score=48.32 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=38.1
Q ss_pred CcccccCcccCcCceEccCcc-----cccHHhHHHHHhh-CCCCCCCCCcccc
Q 046850 283 EFRCPISLDLMRDPVIVASGH-----TYDRNSIAQWINS-GHHTCPKSGQRLI 329 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~~cgh-----t~cr~ci~~w~~~-~~~~CP~c~~~l~ 329 (686)
.-.|.||++-..+|.+.+|.+ .|=+.|+.+|+.. ++.+||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 458999998777887777653 6888999999985 6789999998764
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.03 E-value=0.0012 Score=67.19 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=38.0
Q ss_pred CCcccccCcccCcC----ceE----ccCcccccHHhHHHHHhhC----------CCCCCCCCcccc
Q 046850 282 DEFRCPISLDLMRD----PVI----VASGHTYDRNSIAQWINSG----------HHTCPKSGQRLI 329 (686)
Q Consensus 282 ~~~~Cpic~~~m~d----Pv~----~~cght~cr~ci~~w~~~~----------~~~CP~c~~~l~ 329 (686)
..-.|+||...+.+ |-. ..|||.|-..|+.+|+... ...||.|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 35589999998876 432 2799999999999999861 147999999875
No 161
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.96 E-value=0.074 Score=53.15 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=123.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhC-CHHHHHHhhcCCCHHHHHHHHHHhhcccc---ccccHHH
Q 046850 397 EFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAG-AIPFLVTLLSSHDPRIQENAVTALLNLSI---FDNNKIL 472 (686)
Q Consensus 397 ~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g-~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~---~~~~k~~ 472 (686)
+.+...|-+.+...+.+|+..|......++ ...+...+ +++.+.--+.+.+..+...++.+|..+.. ..+.+-.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 345566777888889999999987765433 23332212 23333323346788888888888776531 1111111
Q ss_pred HHh-cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 473 IMA-AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 473 i~~-~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
-.+ .-.+|.|+.-+.++ ...+|..+-.++..+... .....+++.+++-+++.+.+.+..++..+.++-...
T Consensus 127 ~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 112 23689999999888 888999888888777532 121346778888889999999999999999887544
Q ss_pred CcHHHHHHcCcH---HHHHHHhcCCCchhHHHHHHHHHHHhC
Q 046850 552 ANKASVVVAGAV---PLLIELLMDDKAGITDDALAVLALLLG 590 (686)
Q Consensus 552 ~~~~~iv~~G~v---~~Ll~lL~~~~~~v~~~al~~L~nLa~ 590 (686)
+.. ...++ +.+.+++.+.+..++..|+.++..+-.
T Consensus 199 G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 199 GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 322 24467 999999999999999999999987643
No 162
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.48 E-value=0.12 Score=50.80 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCC-----HHHHHHHHHHhhcccccccc--HHHHHhcCcHHHHH
Q 046850 411 QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHD-----PRIQENAVTALLNLSIFDNN--KILIMAAGAIDSII 483 (686)
Q Consensus 411 q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~-----~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv 483 (686)
...|+..|.-+|. +++.|..+.+++..-.|-.+|+..+ .-++-..+.+++.|.+.++. -..+.+.+++|..+
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3456666777786 8999999999998778888887643 45788888888888876554 55566789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcC-------CCcHHHHHHh-cccCChHHHHHHHHHHHHhcCCCCcHH
Q 046850 484 EVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGR-------PRAIPALVGL-LREGTTAGKKDAATALFNLAVYNANKA 555 (686)
Q Consensus 484 ~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~l-L~~~~~~~~~~Al~aL~nLs~~~~~~~ 555 (686)
+.+..| ++-.+..|+-++..+-.++..-..+... ..++..++.- ...++++..+..+.+-..|+.++..+.
T Consensus 152 rime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~ 230 (268)
T 2fv2_A 152 RIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE 230 (268)
T ss_dssp HHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 999999 9999999999999988777544433321 2233333432 345678999999999999988876665
Q ss_pred HHH
Q 046850 556 SVV 558 (686)
Q Consensus 556 ~iv 558 (686)
.+.
T Consensus 231 aL~ 233 (268)
T 2fv2_A 231 ALR 233 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 163
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.23 E-value=0.48 Score=56.53 Aligned_cols=256 Identities=11% Similarity=0.119 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc------CCCHHHHHHHHHHhhccccccccHHHHHhc-----C
Q 046850 409 EIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS------SHDPRIQENAVTALLNLSIFDNNKILIMAA-----G 477 (686)
Q Consensus 409 ~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~------s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~-----g 477 (686)
..+..|...|..++.... ..+. .-+++.+...+. +.+...++.|+.+++.++.....+..-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456677788888887432 1111 113344444555 567788999999999987432111000000 1
Q ss_pred cHH----HHHHHHcCC--CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCC
Q 046850 478 AID----SIIEVLQSG--KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 478 ~l~----~Lv~lL~~~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
..+ .++..|.++ ...-+|..|+++|..++..- ....+ ..+++.++..|.+.++.++..|++||.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 111 223334443 26789999999999997642 22233 347888999998888999999999999999742
Q ss_pred C---------cHHHHHH--cCcHHHHHHHhcCCC---c--hhHHHHHHHHHHHhCCh-hcHHHHHhCCCChHHHHHHHhc
Q 046850 552 A---------NKASVVV--AGAVPLLIELLMDDK---A--GITDDALAVLALLLGCR-EGLEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 552 ~---------~~~~iv~--~G~v~~Ll~lL~~~~---~--~v~~~al~~L~nLa~~~-~~~~~i~~~~~~i~~Lv~lL~~ 614 (686)
+ .+..+.. ..+++.|+.++.... . ...+.++.+|..++..- +.-..... .. ++.|..++..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l-~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QL-LAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HH-HHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HH-HHHHHHHHHH
Confidence 1 2222221 234555666665531 1 12345556665554311 10000000 11 4444444432
Q ss_pred -----CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 615 -----GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 615 -----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
.++..+..+..+|..++...+++....+. ..++|.+..++.+........+-.++..+-.
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 35566777888888887763333333333 2357888888877655555555555554443
No 164
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.08 E-value=0.19 Score=49.29 Aligned_cols=175 Identities=13% Similarity=0.051 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC-----hHHHHHHHHHHHHhcCCCC--cHHHHHHcCcHHHHH
Q 046850 495 RENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT-----TAGKKDAATALFNLAVYNA--NKASVVVAGAVPLLI 567 (686)
Q Consensus 495 ~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~Al~aL~nLs~~~~--~~~~iv~~G~v~~Ll 567 (686)
..+|.+.|..++.+++.|..+.. ....-.|..+|+..+ .-.+-.+++.++.|...++ ....+.+.+++|..+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 46788888999999999999988 887778888887654 2677889999999996544 567778899999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCC-------ChHHHHH-HHhcCChHHHHHHHHHHHHhhccChHHHH
Q 046850 568 ELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRV-------LVPLLID-LLRFGSAKGKENSITLLLGLCKDGGEEVA 639 (686)
Q Consensus 568 ~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~-------~i~~Lv~-lL~~~s~~~ke~A~~~L~~L~~~~~~~~~ 639 (686)
+.+..++..-+..|..++..+-.++.|...+.+... .+..++. +.+..+++.-.+.+.+-..|+.+ +..+
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn--~rar 229 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN--PRAR 229 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS--HHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC--HHHH
Confidence 999988888899999999999887877766544321 1233333 33457899999999999999988 7777
Q ss_pred HHHHcCCC--Ch-HHHHHHHhcCCHHHHHHHHHHHHH
Q 046850 640 RRLLINPR--SI-PSLQSLTTDGSLKARRKADALLRL 673 (686)
Q Consensus 640 ~~l~~~~g--~i-~~L~~Ll~~~~~~~k~~A~~lL~~ 673 (686)
..+..... +- ..+..++ .+++.+|+.-..++..
T Consensus 230 ~aL~~~LP~~Lrd~tf~~~l-~~D~~~k~~l~qLl~n 265 (268)
T 2fv2_A 230 EALRQCLPDQLKDTTFAQVL-KDDTTTKRWLAQLVKN 265 (268)
T ss_dssp HHHHHHSCGGGTSSTTHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHhhChHHHHHH-hcCHHHHHHHHHHHHh
Confidence 77654110 00 1111222 3567777655555544
No 165
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.11 Score=52.29 Aligned_cols=187 Identities=18% Similarity=0.169 Sum_probs=120.6
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCch---hhhH-hhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC----c
Q 046850 482 IIEVLQSGKTMEARENAAATIFSLSMIDD---CKVM-IGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA----N 553 (686)
Q Consensus 482 Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~---~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~----~ 553 (686)
+-+-|.+. +...|..|...|..+..... .... +.......+.+-..+.+.+..+...++.+|..++..-. .
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55677777 89999999998887654321 1111 11112356667778888889999999999998876432 1
Q ss_pred HH--HHHHcCcHHHHHHH-hcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 554 KA--SVVVAGAVPLLIEL-LMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 554 ~~--~iv~~G~v~~Ll~l-L~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
+. ...-..+++.|+.- |.+....++..|..++..++........+ +..+...+.+.+|.++..++..|..+
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 22 22334567777764 67778889999988887776422211111 34445566778999999999998877
Q ss_pred hccChHHH--HHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 631 CKDGGEEV--ARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 631 ~~~~~~~~--~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
...-+... ....+ ..+++.+..++.+.++.+|..|..++-.+-++
T Consensus 167 l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 64311110 01111 11366788889999999999999888766554
No 166
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.68 E-value=0.015 Score=49.06 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=29.0
Q ss_pred CCcccccCcc-cCcCceE--ccCcccccHHhHHHHHh
Q 046850 282 DEFRCPISLD-LMRDPVI--VASGHTYDRNSIAQWIN 315 (686)
Q Consensus 282 ~~~~Cpic~~-~m~dPv~--~~cght~cr~ci~~w~~ 315 (686)
++..|++|.+ +..+||. +.|||+||+.|+..|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4678999996 5789998 89999999999998543
No 167
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.29 E-value=0.26 Score=50.33 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=111.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHH----HHhhcC-CCHHHHHHHHHHhhcccccccc
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFL----VTLLSS-HDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~L----v~lL~s-~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
.+..+.+.+ +=+.+.+.-++..+|.++. ++.....+.+.+.-..+ ...+.+ ..+..+.-+++++.|+-.+..+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 345555555 4455667778888888776 45555555443222333 333332 3566788999999999998888
Q ss_pred HHHHHhc--CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-CChHHHHHHHHHHHH
Q 046850 470 KILIMAA--GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-GTTAGKKDAATALFN 546 (686)
Q Consensus 470 k~~i~~~--g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~n 546 (686)
+..+... .+++.+...+... +..++..++.+++|++..-......-....++..+..++.. .+.+....++.||++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8877753 3455555555455 88999999999999987532111111101234444455543 467999999999999
Q ss_pred hcCCCCcHHHHHHc-CcHHHHHHHhcC-CCchhHHH
Q 046850 547 LAVYNANKASVVVA-GAVPLLIELLMD-DKAGITDD 580 (686)
Q Consensus 547 Ls~~~~~~~~iv~~-G~v~~Ll~lL~~-~~~~v~~~ 580 (686)
|...++....+.+. |+-..+-+.... ....+.+.
T Consensus 261 L~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 261 LISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 99876655555554 444433333333 23344443
No 168
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.94 E-value=6.3 Score=40.24 Aligned_cols=241 Identities=14% Similarity=0.063 Sum_probs=170.5
Q ss_pred HHHhCCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-----HHHHHhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Q 046850 432 IAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN-----KILIMAAGAIDSIIEVLQSGK-TMEARENAAATIFSL 505 (686)
Q Consensus 432 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~-----k~~i~~~g~l~~Lv~lL~~~~-~~e~~~~aa~~L~~L 505 (686)
+...+.+..|+..|..=+-+.+..+..+..++.....+ ...+... +-++..|-.|+ ..+.-..+-..|...
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ---QNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC---THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC---HHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 44567888999999989999999999999888765432 2233321 23333333332 446667777888888
Q ss_pred ccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC-cHHHHHHcC---cHHHHHHHhcCCCchhHHHH
Q 046850 506 SMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA-NKASVVVAG---AVPLLIELLMDDKAGITDDA 581 (686)
Q Consensus 506 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~-~~~~iv~~G---~v~~Ll~lL~~~~~~v~~~a 581 (686)
..++.....+.. .+.+-.+.+.+..++-++..+|..++.-|-..+. ....++... .+...-++|.+++--.+..+
T Consensus 151 ir~e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IRHEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HTSHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhHHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 888887777777 7788889999999999999999999998766543 445555543 46667778888888889999
Q ss_pred HHHHHHHhCChhcHHHHH---hCCCChHHHHHHHhcCChHHHHHHHHHHHHhhccC--hHHHHHHHHcCCCChHHHHHHH
Q 046850 582 LAVLALLLGCREGLEEIR---KCRVLVPLLIDLLRFGSAKGKENSITLLLGLCKDG--GEEVARRLLINPRSIPSLQSLT 656 (686)
Q Consensus 582 l~~L~nLa~~~~~~~~i~---~~~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~~Ll 656 (686)
+..|+.|-....+...+. ....-+..++.+|++.+..++-.|..+.--+..+. ++.+...+.. . -..|++++
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~-N--r~kLl~fl 306 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK-N--QAKLIEFL 306 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-T--HHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHH-H--HHHHHHHH
Confidence 999999987666655443 33322788888999999999999999988777764 3567777766 3 45555554
Q ss_pred hcC------CHHHHHHHHHHHHHHHhccc
Q 046850 657 TDG------SLKARRKADALLRLLNRCCS 679 (686)
Q Consensus 657 ~~~------~~~~k~~A~~lL~~l~~~~~ 679 (686)
.+- ++.-...=..+++.+.+...
T Consensus 307 ~~f~~d~~eDeqF~dEK~~lI~~I~~L~~ 335 (341)
T 1upk_A 307 SKFQNDRTEDEQFNDEKTYLVKQIRDLKR 335 (341)
T ss_dssp HHTTTTC-CCSHHHHHHHHHHHHHHTCCC
T ss_pred HhCCCCCcchhhHHHHHHHHHHHHHhCCC
Confidence 332 33444444557777777653
No 169
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.50 E-value=1.6 Score=44.54 Aligned_cols=217 Identities=17% Similarity=0.139 Sum_probs=156.4
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHh--CCHHHHHH-hhcC-CCHHHHHHHHHHhhcccccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEA--GAIPFLVT-LLSS-HDPRIQENAVTALLNLSIFDNN 469 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~--g~i~~Lv~-lL~s-~~~~~~~~A~~aL~nLs~~~~~ 469 (686)
+++..|+..|..-+.|.+..++....++.......+-..++. .- |-++. ++.. +++++.-.+-..|.....++.-
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~l 156 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPL 156 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHH
Confidence 577788888888899999999999999888666554333221 11 22333 3322 4667777788888888888777
Q ss_pred HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hhhH-hhc-CCCcHHHHHHhcccCChHHHHHHHHHHHH
Q 046850 470 KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD-CKVM-IGG-RPRAIPALVGLLREGTTAGKKDAATALFN 546 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~-~~~~-i~~-~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 546 (686)
...+...+.+-.+.+.+..+ +-++-..|..++..|-..+. .... +.. -..++...-.+|.+++--.+..++..|+.
T Consensus 157 a~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 157 AKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 77788888888999999988 99999999999998855442 2212 211 12356677788999999999999999999
Q ss_pred hcCCCCcHHHHHH----cCcHHHHHHHhcCCCchhHHHHHHHHHHHhCChhc---HHHHHhCCCChHHHHHHHhc
Q 046850 547 LAVYNANKASVVV----AGAVPLLIELLMDDKAGITDDALAVLALLLGCREG---LEEIRKCRVLVPLLIDLLRF 614 (686)
Q Consensus 547 Ls~~~~~~~~iv~----~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~---~~~i~~~~~~i~~Lv~lL~~ 614 (686)
|-.+..|...|.. ..-+..++.+|.+.+..++-+|..++.-...+|.. ...|+..+- ..|+++|..
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr--~kLl~fl~~ 308 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ--AKLIEFLSK 308 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH--HHHHHHHHH
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHH--HHHHHHHHh
Confidence 9999888777654 24588899999999999999999999988654433 222333332 455555543
No 170
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.05 Score=56.38 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=52.7
Q ss_pred CCCcccccCcccCcCceEc-cCccc--ccHHhHHHHHhh-CCCCCCCCCccccCCCCCCcHHHHHHHHHH
Q 046850 281 PDEFRCPISLDLMRDPVIV-ASGHT--YDRNSIAQWINS-GHHTCPKSGQRLIHMALIPNYTLKSLLHQW 346 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~-~cght--~cr~ci~~w~~~-~~~~CP~c~~~l~~~~l~~n~~l~~~i~~~ 346 (686)
.-.+.||++...|..|+-- .|.|. |+...+...... +...||+|.+.+....+..+..+..++...
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 3468999999999999954 89997 777666555443 678999999999888899998887776543
No 171
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.30 E-value=0.7 Score=46.03 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=114.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHH----HcCCCCHHHHHHHHHHHHHhcc---Cchhh
Q 046850 440 FLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEV----LQSGKTMEARENAAATIFSLSM---IDDCK 512 (686)
Q Consensus 440 ~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~l----L~~~~~~e~~~~aa~~L~~Ls~---~~~~~ 512 (686)
.+...|.+.|..-+..|+..|..... .+...+.. .++.+++. +.+. +..+...+..+|..+.. ..+++
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34455555666666666666555322 12222221 12333332 2244 66666666666666532 11111
Q ss_pred hHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhCCh
Q 046850 513 VMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLGCR 592 (686)
Q Consensus 513 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~ 592 (686)
-.-.+..-.+|.|++-+.+....++..+-.+|..|+... --..+++.++.-+.+.+...++.++..+..+-...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 111111347899999998888888888777776665311 11235566777788889999999999999885421
Q ss_pred hcHHHHHhCCCCh---HHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHH
Q 046850 593 EGLEEIRKCRVLV---PLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRL 642 (686)
Q Consensus 593 ~~~~~i~~~~~~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 642 (686)
|.. .... + |.+..++...+..+|+.|+.++..+..+.++.....+
T Consensus 199 -G~~---~~~~-l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 199 -GIS---PLKS-LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp -CSG---GGGG-GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred -CCC---cccc-ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 111 2235 8 9999999989999999999999888776656555543
No 172
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.83 E-value=4.2 Score=48.18 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=87.6
Q ss_pred cCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHH---cCCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCc
Q 046850 446 SSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVL---QSGKTMEARENAAATIFSLSMID-DCKVMIGGRPRA 521 (686)
Q Consensus 446 ~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL---~~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~ 521 (686)
.+.+...++.++.+++.++..-... ....++.++..+ ..+ +..++..+++++..++..- .+...+ ..+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l---~~v 530 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI---NSV 530 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH---TTT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH---HHH
Confidence 5567888999999999988653220 123344455544 223 6779999999999987542 222333 568
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHH--cCcHHHHHHHhcC--CCchhHHHHHHHHHHHhC
Q 046850 522 IPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVV--AGAVPLLIELLMD--DKAGITDDALAVLALLLG 590 (686)
Q Consensus 522 i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~--~G~v~~Ll~lL~~--~~~~v~~~al~~L~nLa~ 590 (686)
++.|+..|.+ +.++..|+++|.+++.... ..+.. ..++..|..++.. .+...+..+..+++.++.
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 9999998854 8899999999999996432 11211 2234445555554 245677778888888875
No 173
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.72 E-value=1.1 Score=53.25 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHH---c--CCCCHHHHHHHHHHHHHhccCc-hhhhHhhcCCCc
Q 046850 448 HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVL---Q--SGKTMEARENAAATIFSLSMID-DCKVMIGGRPRA 521 (686)
Q Consensus 448 ~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL---~--~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~~g~ 521 (686)
.+...++.|+.+|..++....... ...++.++.++ . ++ ...++..+++++..++..- .+...+ ..+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l---~~v 547 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI---PPA 547 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH---HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH---HHH
Confidence 567788999999999875432211 13444455444 2 23 7789999999999987532 122222 346
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHH--cCcHHHHHHHhcC--CCchhHHHHHHHHHHHhCC--hhcH
Q 046850 522 IPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVV--AGAVPLLIELLMD--DKAGITDDALAVLALLLGC--REGL 595 (686)
Q Consensus 522 i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~--~G~v~~Ll~lL~~--~~~~v~~~al~~L~nLa~~--~~~~ 595 (686)
++.|+..| + +++...|++++.+|+... +..+.. .+++..+..++.. .+...+..+..++..++.. ++..
T Consensus 548 l~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 548 INLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 77777777 3 789999999999999543 333322 3455666666665 3456777788888888652 1222
Q ss_pred HHHHhCCCChHHHHH----HHhcC--ChHHHHHHHHHHHHhhccC-----h----------HHHHHHHHcCCCChHHHHH
Q 046850 596 EEIRKCRVLVPLLID----LLRFG--SAKGKENSITLLLGLCKDG-----G----------EEVARRLLINPRSIPSLQS 654 (686)
Q Consensus 596 ~~i~~~~~~i~~Lv~----lL~~~--s~~~ke~A~~~L~~L~~~~-----~----------~~~~~~l~~~~g~i~~L~~ 654 (686)
...+. .. ++.++. ++... ++..+...+..|..|+..- . .+....+. ..+++.+..
T Consensus 623 ~~~~~-~l-l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~ 698 (971)
T 2x1g_F 623 PKYLD-II-VSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKR 698 (971)
T ss_dssp HHHHH-HH-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHH
T ss_pred HHHHH-HH-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHH
Confidence 22222 11 333433 33322 3434444444444443210 0 00011111 236888888
Q ss_pred HHhcC--CHHHHHHHHHHHHHHHhc
Q 046850 655 LTTDG--SLKARRKADALLRLLNRC 677 (686)
Q Consensus 655 Ll~~~--~~~~k~~A~~lL~~l~~~ 677 (686)
++... ++.+.+.+.++++.+-..
T Consensus 699 ~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 699 IAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHHHh
Confidence 77653 668888888877775443
No 174
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.39 E-value=3.6 Score=40.04 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC----C-------CHHHHHHHHHHhhccccccccHHHHHh-cCcHH
Q 046850 413 QAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS----H-------DPRIQENAVTALLNLSIFDNNKILIMA-AGAID 480 (686)
Q Consensus 413 ~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s----~-------~~~~~~~A~~aL~nLs~~~~~k~~i~~-~g~l~ 480 (686)
+-+..|+.....++.....=...||+..|+.+|.. + +...+..++.+|..+..+..+...++. .+++.
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHH
T ss_pred HHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHH
Confidence 34555554444444333222246778888877742 1 356677888888888766666666664 57899
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCch--h-hhHh----------hcCCCcHHHHHHhccc-CChHHHHHHHHHHHH
Q 046850 481 SIIEVLQSGKTMEARENAAATIFSLSMIDD--C-KVMI----------GGRPRAIPALVGLLRE-GTTAGKKDAATALFN 546 (686)
Q Consensus 481 ~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL~n 546 (686)
.|+..|.+. ...++..++.+|..+|..++ . ...+ .+ ..-+..+++.++. ++.+.+..++..+-.
T Consensus 100 ~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e-~~RF~~lv~~l~~~~~~e~~~~~m~lIN~ 177 (233)
T 2f31_A 100 LLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKSGTSIALKVGCLQLINA 177 (233)
T ss_dssp HHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT-SCTTHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC-cchHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999888 89999999999988887653 2 2221 22 4456678888874 345666666666666
Q ss_pred hcCCCCc-------HHHHHHcCcHHHHHHHhcCCCchh
Q 046850 547 LAVYNAN-------KASVVVAGAVPLLIELLMDDKAGI 577 (686)
Q Consensus 547 Ls~~~~~-------~~~iv~~G~v~~Ll~lL~~~~~~v 577 (686)
+...+++ |..+...|..+.+-++=...++.+
T Consensus 178 li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 178 LITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence 6665553 344555666655544333334333
No 175
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.38 E-value=5.1 Score=47.60 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=122.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhCchhHHHHHHh-----CCHH----HHHHhhcCC---CHHHHHHHHHHhhccccccccHHH
Q 046850 405 MGSPEIQSQAAYELRLLAKTGMDNRRIIAEA-----GAIP----FLVTLLSSH---DPRIQENAVTALLNLSIFDNNKIL 472 (686)
Q Consensus 405 s~~~~~q~~al~~L~~La~~~~~~r~~i~~~-----g~i~----~Lv~lL~s~---~~~~~~~A~~aL~nLs~~~~~k~~ 472 (686)
+.++..+..|+.++..++......... ... ...+ .++..|.++ ++-++..|+++|+.++..- .+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence 456778888999999987532100000 000 1222 233445555 8899999999999998653 222
Q ss_pred HHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch---------hhhHhhc-CCCcHHHHHHhcccCC---hH--HH
Q 046850 473 IMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD---------CKVMIGG-RPRAIPALVGLLREGT---TA--GK 537 (686)
Q Consensus 473 i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~---------~~~~i~~-~~g~i~~Lv~lL~~~~---~~--~~ 537 (686)
. -..+++.++..|.+. +..++..|+.+|.+++...+ .+..+.. ....++.|+.++.... +. ..
T Consensus 493 ~-l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 493 Q-LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570 (960)
T ss_dssp H-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred H-HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 2 234678888888877 88999999999999987422 2333321 1235556666766641 11 23
Q ss_pred HHHHHHHHHhcCC--CCcHHHHHHcCcHHHHHHHhc----C-CCchhHHHHHHHHHHHhCC--hhcHHHHHhCCCChHHH
Q 046850 538 KDAATALFNLAVY--NANKASVVVAGAVPLLIELLM----D-DKAGITDDALAVLALLLGC--REGLEEIRKCRVLVPLL 608 (686)
Q Consensus 538 ~~Al~aL~nLs~~--~~~~~~iv~~G~v~~Ll~lL~----~-~~~~v~~~al~~L~nLa~~--~~~~~~i~~~~~~i~~L 608 (686)
..+..+|..++.. ......+ ..+++.|+..+. + .+......++.+|..++.. ++....+ .... +|.+
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~-~p~~ 646 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSM-MPTF 646 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHH-HHHH
Confidence 4455555554431 1111111 124455555552 2 2445556677778777653 2222222 2233 6777
Q ss_pred HHHHhcCChHHHHHHHHHHHHhh
Q 046850 609 IDLLRFGSAKGKENSITLLLGLC 631 (686)
Q Consensus 609 v~lL~~~s~~~ke~A~~~L~~L~ 631 (686)
..+|........+.+..++..+.
T Consensus 647 ~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 647 LTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhHHHHHHHHHHHH
Confidence 77787655556666666665554
No 176
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.26 E-value=0.11 Score=53.64 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=53.6
Q ss_pred CCCCcccccCcccCcCceEc-cCccc--ccHHhHHHHHhh-CCCCCCCCCccccCCCCCCcHHHHHHHHH
Q 046850 280 IPDEFRCPISLDLMRDPVIV-ASGHT--YDRNSIAQWINS-GHHTCPKSGQRLIHMALIPNYTLKSLLHQ 345 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~-~cght--~cr~ci~~w~~~-~~~~CP~c~~~l~~~~l~~n~~l~~~i~~ 345 (686)
..-.+.||++...|..|+-- .|.|. |+...+...... +...||.|++.+....+..+..+..++..
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 34478999999999999964 89997 877766665544 56899999999988889999888877754
No 177
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.10 E-value=0.73 Score=46.99 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCcHHHHHHc--CcHHHHHHHhcCCCchhHHHHHHHHHHHhCChh---cHHHHHhCCCChHH
Q 046850 533 TTAGKKDAATALFNLAVYNANKASVVVA--GAVPLLIELLMDDKAGITDDALAVLALLLGCRE---GLEEIRKCRVLVPL 607 (686)
Q Consensus 533 ~~~~~~~Al~aL~nLs~~~~~~~~iv~~--G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~---~~~~i~~~~~~i~~ 607 (686)
.+..+..++.+++|+..++..+..+... .+++.+...+.+.+..++..+..++-|++.... ....... . +..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--l-l~~ 237 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--C-LSL 237 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--H-HHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--H-HHH
Confidence 4566888999999999998888877753 334444444455678889999999999985211 1111011 1 444
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc-CCHHHHHHHHHHHHH
Q 046850 608 LIDLLRF-GSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD-GSLKARRKADALLRL 673 (686)
Q Consensus 608 Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~ 673 (686)
+..+++. .+++....++.+|.+|...+ .+..+ +.+..|+...+-.+... ..+++.+.+..+|.+
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~~-~~~~~-lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISDD-SNAVQ-LAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTTC-HHHHH-HHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhCC-hhHHH-HHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 5556654 57778888888889998764 44433 33325555555555554 367888888877754
No 178
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.03 E-value=6.6 Score=41.25 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=110.5
Q ss_pred HHHHHhhcCC-HHHHHHHHHHHHHHHhhCchhH-HHHHHhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccc
Q 046850 398 FLVGKLAMGS-PEIQSQAAYELRLLAKTGMDNR-RIIAEAGAIPFLVTLLSS-----------HDPRIQENAVTALLNLS 464 (686)
Q Consensus 398 ~Lv~~L~s~~-~~~q~~al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLs 464 (686)
..+..|.++. .+.....+..|+.....++-.. ..|+ .+|+..|+.+|.. .+...+..++.+|..+-
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3455555542 2223345666665555454443 3344 6778888888742 24567788888888887
Q ss_pred cccccHHHHHh-cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--h-hhH----------hhcCCCcHHHHHHhcc
Q 046850 465 IFDNNKILIMA-AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDD--C-KVM----------IGGRPRAIPALVGLLR 530 (686)
Q Consensus 465 ~~~~~k~~i~~-~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~--~-~~~----------i~~~~g~i~~Lv~lL~ 530 (686)
.+..+...++. ..++..|+..|.+. ...++..++.+|..+|..++ + ... .++ ..-+..+++.|.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~ 226 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLK 226 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTS
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHH
Confidence 66667666665 58899999999888 89999999999998887653 2 111 223 455778888888
Q ss_pred cC-ChHHHHHHHHHHHHhcCCCCc-------HHHHHHcCcHHHHHHHhcC
Q 046850 531 EG-TTAGKKDAATALFNLAVYNAN-------KASVVVAGAVPLLIELLMD 572 (686)
Q Consensus 531 ~~-~~~~~~~Al~aL~nLs~~~~~-------~~~iv~~G~v~~Ll~lL~~ 572 (686)
++ +.+.+..++..+-.+...+++ |..+...|..+.+-+ |..
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 74 556666666666666665552 344556676666655 543
No 179
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.93 E-value=0.12 Score=50.84 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=38.5
Q ss_pred CcccccCcccCcCceEc-cCcccccHHhHHHHHhh-CCCCCCCCCccccCC
Q 046850 283 EFRCPISLDLMRDPVIV-ASGHTYDRNSIAQWINS-GHHTCPKSGQRLIHM 331 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~-~cght~cr~ci~~w~~~-~~~~CP~c~~~l~~~ 331 (686)
-..|.+|.++...-+.- .|++.|-..|+.+|++. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34799999987755443 59999999999999986 356999999876543
No 180
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.67 E-value=3.6 Score=48.84 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhc---c--cCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHH
Q 046850 491 TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLL---R--EGTTAGKKDAATALFNLAVYNANKASVVVAGAVPL 565 (686)
Q Consensus 491 ~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~--~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~ 565 (686)
+...++.|+.++..++..-.... ...++.++.++ . +.++.++..++++|..++..-......+ ..+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 66789999999999876532211 12344444433 3 2478999999999999885322111111 134556
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhC-CCChHHHHHHHhc--CChHHHHHHHHHHHHhhcc
Q 046850 566 LIELLMDDKAGITDDALAVLALLLGCREGLEEIRKC-RVLVPLLIDLLRF--GSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 566 Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~-~~~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~ 633 (686)
|+..| + +.++..|+.++.+|+. +.+..+... +.++..+..++.. .+...++.+..++..++..
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 66666 2 6899999999999994 233333211 1114455566665 3567888888888888764
No 181
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.91 E-value=8.5 Score=41.22 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=90.4
Q ss_pred cCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHH
Q 046850 405 MGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIE 484 (686)
Q Consensus 405 s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~ 484 (686)
.++...++-|+..|....++-++.... ++..++.+...+|..+|..|+..|-.++.+ ++..+ +...|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 567889999999999999988877664 577899999999999999999999999988 55333 3566889
Q ss_pred HHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHH
Q 046850 485 VLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFN 546 (686)
Q Consensus 485 lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~n 546 (686)
+|... +.......-.+|..|-..+. .+.+..|..-+..++..+++.++..|..
T Consensus 108 lLqtd-d~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 108 LLQTD-DSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HTTCC-CHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhcc-chHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 99987 66556666666666544321 2344455555555677777777777753
No 182
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.36 E-value=0.6 Score=46.01 Aligned_cols=172 Identities=13% Similarity=0.096 Sum_probs=89.4
Q ss_pred CchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 046850 425 GMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFS 504 (686)
Q Consensus 425 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~ 504 (686)
+++.|...+..=....+..++.++++.++..++..|. .+.|..++.++ +.++|..++..+
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~-----------------~~~L~~ll~D~-d~~VR~~aA~~l-- 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMFDE-DREVRITVADRL-- 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTTCS-CHHHHHHHHHHS--
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCC-----------------HHHHHHHHcCC-CHHHHHHHHHhC--
Confidence 3445555554323445566777888888888886431 13455566666 778887777632
Q ss_pred hccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHH
Q 046850 505 LSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAV 584 (686)
Q Consensus 505 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~ 584 (686)
. .+.|..+++++++.++..++.. +. .+.+..++.+++..++..++..
T Consensus 123 -~---------------~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 123 -P---------------LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKR 169 (244)
T ss_dssp -C---------------TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHH
T ss_pred -C---------------HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHc
Confidence 1 1134445666677777776662 11 1123334455566666555442
Q ss_pred HHHHhCChhcHHHHHhCCCChHHHHHHHhcCChHHHHHHHH-----HHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC
Q 046850 585 LALLLGCREGLEEIRKCRVLVPLLIDLLRFGSAKGKENSIT-----LLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG 659 (686)
Q Consensus 585 L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~~s~~~ke~A~~-----~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~ 659 (686)
+ . .+.+..++...++.++..++. .|..|.......++..+....| .+.|..| .+.
T Consensus 170 ---l--------------~-~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l~-~~~L~~L-~D~ 229 (244)
T 1lrv_A 170 ---L--------------P-EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS-LEALREL-DEP 229 (244)
T ss_dssp ---S--------------C-GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSC-HHHHHHC-CCC
T ss_pred ---C--------------C-HHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcCC-HHHHHHc-cCC
Confidence 1 0 122222333344444444442 2222333333444444444233 4566666 777
Q ss_pred CHHHHHHHHH
Q 046850 660 SLKARRKADA 669 (686)
Q Consensus 660 ~~~~k~~A~~ 669 (686)
+..+|..|..
T Consensus 230 ~~~VR~aa~~ 239 (244)
T 1lrv_A 230 DPEVRLAIAG 239 (244)
T ss_dssp CHHHHHHHHC
T ss_pred CHHHHHHHHH
Confidence 8888877754
No 183
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.18 E-value=16 Score=38.37 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=101.9
Q ss_pred HHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-----------CCHHHHHHHHHHhhccccccccHHHHHh-cCcHHH
Q 046850 414 AAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-----------HDPRIQENAVTALLNLSIFDNNKILIMA-AGAIDS 481 (686)
Q Consensus 414 al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLs~~~~~k~~i~~-~g~l~~ 481 (686)
.+..|+.....++-....=...+|+..|+.+|.. .+...+..++.+|..+..+..+...++. .+++..
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~ 104 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILL 104 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHH
T ss_pred HHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHH
Confidence 4555555444444333222235777888877742 1456677888888888766666666665 578999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCch--h-hhHh----------hcCCCcHHHHHHhcccC-ChHHHHHHHHHHHHh
Q 046850 482 IIEVLQSGKTMEARENAAATIFSLSMIDD--C-KVMI----------GGRPRAIPALVGLLREG-TTAGKKDAATALFNL 547 (686)
Q Consensus 482 Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~--~-~~~i----------~~~~g~i~~Lv~lL~~~-~~~~~~~Al~aL~nL 547 (686)
|+..|.+. ...++..++.+|..+|..++ . ...+ .+ ..-+..+++.+..+ +.+.+..++..+-.|
T Consensus 105 l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e-~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 105 LVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCc-hhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999887 88999999988888887653 2 1111 22 44566788888743 456666666666666
Q ss_pred cCCCCc-------HHHHHHcCcHHHHHHHhcCCCchh
Q 046850 548 AVYNAN-------KASVVVAGAVPLLIELLMDDKAGI 577 (686)
Q Consensus 548 s~~~~~-------~~~iv~~G~v~~Ll~lL~~~~~~v 577 (686)
...+++ |..+...|+.+.+-.+=...++.+
T Consensus 183 v~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 183 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 666653 455566676666544433344444
No 184
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=88.26 E-value=7.7 Score=37.62 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC--c-HHHHHHc--------
Q 046850 492 MEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA--N-KASVVVA-------- 560 (686)
Q Consensus 492 ~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~--~-~~~iv~~-------- 560 (686)
......++.+|..+.-+......+....+++..|+..|.+.++.++..++..|..+|..++ + ...++++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 4556678888888887776666666668899999999999999999999999999998765 5 5554432
Q ss_pred --CcHHHHHHHhcC-CCchhHHHHHHHHHHHhCChhc-------HHHHHhCCCChHHHHHHHhc-CChHHHH
Q 046850 561 --GAVPLLIELLMD-DKAGITDDALAVLALLLGCREG-------LEEIRKCRVLVPLLIDLLRF-GSAKGKE 621 (686)
Q Consensus 561 --G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~~~~~-------~~~i~~~~~~i~~Lv~lL~~-~s~~~ke 621 (686)
.-...+++.|.. .+...+..++..+-.+..+++. |..+...| +..+++-++. .++....
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G--l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG--LHQVLQELREIENEDMKV 217 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT--HHHHHHHHHHCCCHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--hHHHHHHHhccCCHHHHH
Confidence 245667777753 3455666666666666654443 33445544 4555555554 4554443
No 185
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.63 E-value=1.4 Score=52.78 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHhccCch---hhhHhhcCCCcHHHHHHhccc-----CChHHHHHHHHHHHHhcCCCCcHHHHHHcC
Q 046850 490 KTMEARENAAATIFSLSMIDD---CKVMIGGRPRAIPALVGLLRE-----GTTAGKKDAATALFNLAVYNANKASVVVAG 561 (686)
Q Consensus 490 ~~~e~~~~aa~~L~~Ls~~~~---~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G 561 (686)
.+...++.++++++.++.... ....+ ..+++.|+.++.+ ....++..++|+|+..+..-......+ ..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l---~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV---VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RT 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH---HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HH
Confidence 389999999999999987653 23333 3488999998864 223444566788876665322112211 12
Q ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHh--CCC---ChHHHHH----HHhcCChHHHHHHHHHHHHhhc
Q 046850 562 AVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRK--CRV---LVPLLID----LLRFGSAKGKENSITLLLGLCK 632 (686)
Q Consensus 562 ~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~--~~~---~i~~Lv~----lL~~~s~~~ke~A~~~L~~L~~ 632 (686)
++..|+..+.+.++.+++.|+.++.+||. +.+..+.. .+. .++.|+. .+..-.+.....+..++..+..
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33444444455678899999999999996 34444432 111 1343333 3333566777788888888877
Q ss_pred cCh
Q 046850 633 DGG 635 (686)
Q Consensus 633 ~~~ 635 (686)
..+
T Consensus 619 ~~~ 621 (1023)
T 4hat_C 619 EER 621 (1023)
T ss_dssp TCC
T ss_pred hCC
Confidence 654
No 186
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=86.35 E-value=7.4 Score=46.00 Aligned_cols=168 Identities=15% Similarity=0.110 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhc---ccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHH
Q 046850 491 TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLL---REGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLI 567 (686)
Q Consensus 491 ~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll 567 (686)
+...++.++.++..++..-.. .. ...++.++..+ .++++.++..+++++..++..-......+ ..+++.++
T Consensus 462 ~w~~~eaal~al~~i~~~~~~----~~-~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~l~ 535 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV----NY-SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPLVL 535 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS----SC-CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCc----hh-hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHH
Confidence 788899999999999865321 11 23455555544 33567899999999999886422111222 36788888
Q ss_pred HHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHH----HHHHHhc--CChHHHHHHHHHHHHhhccCh-HHHHH
Q 046850 568 ELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPL----LIDLLRF--GSAKGKENSITLLLGLCKDGG-EEVAR 640 (686)
Q Consensus 568 ~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~----Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~ 640 (686)
..|.+ +.++..|+.+|.++|. +.+..+. .- ++. |..++.. -+...++.+..++..++...+ .....
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~--~~~~~l~--p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICR--ECKYDLP--PY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHH--HTGGGCT--TT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHH--HHHHHHH--hh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88854 7899999999999985 2222221 12 333 3444554 256788888988888876543 33322
Q ss_pred HHHcCCCChHHHHHHH----hcC-CHHHHHHHHHHHHHH
Q 046850 641 RLLINPRSIPSLQSLT----TDG-SLKARRKADALLRLL 674 (686)
Q Consensus 641 ~l~~~~g~i~~L~~Ll----~~~-~~~~k~~A~~lL~~l 674 (686)
.+.. +++++...+ .+. ++..+.....++..+
T Consensus 609 ~~~~---l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 609 NLHS---LISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHH---HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2211 344444433 233 666666554444444
No 187
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=85.57 E-value=14 Score=37.84 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=87.2
Q ss_pred hhcccccccc-HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc-cCChHHH
Q 046850 460 LLNLSIFDNN-KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR-EGTTAGK 537 (686)
Q Consensus 460 L~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~ 537 (686)
|+||-.++.+ -.-+++.+++..+..++.-+ +.++.......|...|.....+..- -...+|.++..+. +++.++.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcceE
Confidence 4455555555 78889999999999999998 8899999999998887765443322 2468899888885 5678999
Q ss_pred HHHHHHHHHhcCCCC-cHHHHHHcCcHHHHHHHhc
Q 046850 538 KDAATALFNLAVYNA-NKASVVVAGAVPLLIELLM 571 (686)
Q Consensus 538 ~~Al~aL~nLs~~~~-~~~~iv~~G~v~~Ll~lL~ 571 (686)
....+.|.|...+.. .+...+..|+++.|-..+.
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 999999999998875 6777789999999998873
No 188
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=84.94 E-value=0.6 Score=50.89 Aligned_cols=185 Identities=17% Similarity=0.131 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCC
Q 046850 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSG 489 (686)
Q Consensus 410 ~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~ 489 (686)
+++.|+..|..+ .+-+.. ..++..++..+..+..+++.-++-.|..+ .+-- .. =.++++.++.-|.+.
T Consensus 244 VRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL-~~---Ld~Vv~aVL~GL~D~ 311 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFV-ED---KDGLCRKLVSLLSSP 311 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGC-CC---HHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHH-HH---HHHHHHHHHhhcCCc
Confidence 456666666666 433322 23445555556778899999998888888 1100 11 245678888888888
Q ss_pred CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCC--hHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHH
Q 046850 490 KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGT--TAGKKDAATALFNLAVYNANKASVVVAGAVPLLI 567 (686)
Q Consensus 490 ~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll 567 (686)
+++++..||.+|.-++ .++. + ..++..+-+.|.+-+ ..........|..|+..+.+. -.....+|.|.
T Consensus 312 -DDDVRAVAAetLiPIA-~p~~---l---~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~ 381 (800)
T 3oc3_A 312 -DEDIKLLSAELLCHFP-ITDS---L---DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIF 381 (800)
T ss_dssp -SHHHHHHHHHHHTTSC-CSST---H---HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTG
T ss_pred -ccHHHHHHHHHhhhhc-chhh---H---HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHH
Confidence 9999999999999988 1111 1 123333334443322 123334445555555544310 01126788899
Q ss_pred HHhcCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHH-HHhcCChHHHHHHHHHH
Q 046850 568 ELLMDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLID-LLRFGSAKGKENSITLL 627 (686)
Q Consensus 568 ~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~-lL~~~s~~~ke~A~~~L 627 (686)
.+|.+.-..++..++.+|..+. .+..+..+.+ +|-..++++++.+..+.
T Consensus 382 PFLRHtITSVR~AVL~TL~tfL-----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 382 PCFTSPVPEVRTSILNMVKNLS-----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGTCSSHHHHHHHHHHTTTCC-----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9998888899999988887776 1111444444 44446777787777764
No 189
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.60 E-value=16 Score=38.30 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=99.3
Q ss_pred HHHHHhcCcHHHHHHHHcC----C------CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHH
Q 046850 470 KILIMAAGAIDSIIEVLQS----G------KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKD 539 (686)
Q Consensus 470 k~~i~~~g~l~~Lv~lL~~----~------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 539 (686)
...+. .+|+..|+.+|.. + .+......++.+|..+.-+......+.....+|..|+..|.+..+.++..
T Consensus 103 V~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 103 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 34444 6678888888852 1 13456677888888888777666666666899999999999999999999
Q ss_pred HHHHHHHhcCCCC--c-HHHHHH----------cCcHHHHHHHhcC-CCchhHHHHHHHHHHHhCChhc-------HHHH
Q 046850 540 AATALFNLAVYNA--N-KASVVV----------AGAVPLLIELLMD-DKAGITDDALAVLALLLGCREG-------LEEI 598 (686)
Q Consensus 540 Al~aL~nLs~~~~--~-~~~iv~----------~G~v~~Ll~lL~~-~~~~v~~~al~~L~nLa~~~~~-------~~~i 598 (686)
|+..|..+|..++ + ...+++ ..-+..++..|.. .+...+..++..+-.+..+++. |..+
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef 261 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL 261 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999998774 3 544443 2346778888865 4556666666666666654433 3344
Q ss_pred HhCCCChHHHHHHHhc-CChH
Q 046850 599 RKCRVLVPLLIDLLRF-GSAK 618 (686)
Q Consensus 599 ~~~~~~i~~Lv~lL~~-~s~~ 618 (686)
...| +..+++-++. .++.
T Consensus 262 ~~~G--l~~il~~lr~~~~~~ 280 (383)
T 3eg5_B 262 MRLG--LHQVLQELREIENED 280 (383)
T ss_dssp HHTT--HHHHHHHHTTSCCHH
T ss_pred HHCC--hHHHHHHHhcCCChh
Confidence 4545 4555555665 3443
No 190
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=84.56 E-value=6.3 Score=40.26 Aligned_cols=118 Identities=10% Similarity=0.021 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCC
Q 046850 411 QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGK 490 (686)
Q Consensus 411 q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~ 490 (686)
..++...|..|. ++...-.-++..++|..+......++.++...+...|+..|....-...- -...+|-++..+....
T Consensus 260 vtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 260 IIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCC
Confidence 344445454444 46778888999999999999999999999999999999887532211100 1246777888777544
Q ss_pred CHHHHHHHHHHHHHhccCchhhh-HhhcCCCcHHHHHHhccc
Q 046850 491 TMEARENAAATIFSLSMIDDCKV-MIGGRPRAIPALVGLLRE 531 (686)
Q Consensus 491 ~~e~~~~aa~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~ 531 (686)
++++.....+.|.|........+ .... .|+|+.|-..+..
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~-~nAI~LLh~~I~k 378 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIR-SNAIFLLHTIISK 378 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHH-TTHHHHHHHHHHT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhc-cCcHHHHHHHHhh
Confidence 89999999999999988885544 4445 8999999887654
No 191
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=83.79 E-value=6.4 Score=47.07 Aligned_cols=144 Identities=10% Similarity=0.016 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccccccHHHHHhcCcHH
Q 046850 406 GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-----HDPRIQENAVTALLNLSIFDNNKILIMAAGAID 480 (686)
Q Consensus 406 ~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~ 480 (686)
.++.....++++++.++.+-.+....-.-..+++.|+.++.. +...++..++++|+..+.--........ .++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 579999999999999997544332222223467788887753 2233455677888877642111111111 2444
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhh-----cCCCcHHHHHHh----cccCChHHHHHHHHHHHHhcCCC
Q 046850 481 SIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIG-----GRPRAIPALVGL----LREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 481 ~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~-----~~~g~i~~Lv~l----L~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.|+..+... .+.+...|++++.+|+.. .+..+. +....++.++.. +..-++.....+..++..+...-
T Consensus 544 ~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 455555555 678999999999999874 333332 112244444443 33345667778888888888766
Q ss_pred Cc
Q 046850 552 AN 553 (686)
Q Consensus 552 ~~ 553 (686)
++
T Consensus 621 ~~ 622 (1023)
T 4hat_C 621 RS 622 (1023)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 192
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.08 E-value=4.4 Score=32.48 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCcccccCcccCc-----CceEc--cCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 282 DEFRCPISLDLMR-----DPVIV--ASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 282 ~~~~Cpic~~~m~-----dPv~~--~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
..-.|.||.+-.- +|.+. .|+-..||.|++-=.++|+..||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4468999997531 23333 688889999999888899999999987664
No 193
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=83.03 E-value=0.89 Score=44.78 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHH
Q 046850 399 LVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVT 458 (686)
Q Consensus 399 Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~ 458 (686)
+...+...++.++..++..| ..+.|..++..++..++..++.
T Consensus 79 l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHH
T ss_pred HHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 33445566777777766532 1234566677777777777665
No 194
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=80.18 E-value=34 Score=40.61 Aligned_cols=210 Identities=12% Similarity=0.063 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcCC---CHHHHHHHHHHhhcccc--ccc----cHHHHHhcC
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSSH---DPRIQENAVTALLNLSI--FDN----NKILIMAAG 477 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s~---~~~~~~~A~~aL~nLs~--~~~----~k~~i~~~g 477 (686)
+.+.|.+|-..|..+-. +++ +......+|.+. +..++-.|+.+|.+... ..+ .+ .-++..
T Consensus 21 d~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~-~~lr~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL-QMIRDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HHHHHH
Confidence 78888888888887766 443 344556667553 68888888888876543 222 22 222223
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCCh-HHHHHHHHHHHHhcCC----C-
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTT-AGKKDAATALFNLAVY----N- 551 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~Al~aL~nLs~~----~- 551 (686)
.+..+...-..+...-++...+.+|..+....-. -.. .+.++.|+.++..++. ......+.+|..|+.. .
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~W-p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNW-NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTC-TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccC-chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 3444443110112456778888888777654211 134 6788999999877554 4455566666644421 1
Q ss_pred -C-----c-----HHHHHHc---CcHHHHHHHh----cCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHh
Q 046850 552 -A-----N-----KASVVVA---GAVPLLIELL----MDDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPLLIDLLR 613 (686)
Q Consensus 552 -~-----~-----~~~iv~~---G~v~~Ll~lL----~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~ 613 (686)
. . +..+.+. -+++..+.+| ...++.++..++.+|......-. -..+.+.+. ++.+..++.
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~l-l~~l~~~L~ 243 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPC-MNLLYSFLQ 243 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHH-HHHHHHHTT
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchH-HHHHHHHcC
Confidence 0 1 1222221 1134444444 23677888889999998887432 344555454 788888884
Q ss_pred cCChHHHHHHHHHHHHhhccCh
Q 046850 614 FGSAKGKENSITLLLGLCKDGG 635 (686)
Q Consensus 614 ~~s~~~ke~A~~~L~~L~~~~~ 635 (686)
++..++.|+.+|..+...+.
T Consensus 244 --~~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 244 --IEELRCAACETMTEIVNKKM 263 (980)
T ss_dssp --SHHHHHHHHHHHHHHHHSCC
T ss_pred --ChHHHHHHHHHHHHHHHcCC
Confidence 58999999999999887653
No 195
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=79.85 E-value=3.5 Score=36.62 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=57.3
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCC--------HHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGS--------LKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~--------~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|...++..+-.|+.+|-.||.++.+.++..+......|..+..+-...+ ..+|.+|..++.+|.+
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 56677777778899999999999999999999998888884434444443332212 3589999999999987
Q ss_pred ccccC
Q 046850 677 CCSQS 681 (686)
Q Consensus 677 ~~~~~ 681 (686)
....+
T Consensus 131 ~~~~~ 135 (140)
T 1vdy_A 131 EENGS 135 (140)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 65444
No 196
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.82 E-value=43 Score=39.99 Aligned_cols=218 Identities=18% Similarity=0.134 Sum_probs=129.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhcccccc------c
Q 046850 396 AEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFD------N 468 (686)
Q Consensus 396 i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~------~ 468 (686)
+..++..+-+++.+.|.+|-..|..+-. ++ ++...+..+|. +.+..++-.|+.+|.|..... +
T Consensus 18 l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 4445555556677778888888877755 33 34455556564 468889999999998875321 1
Q ss_pred cHHHHHhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHH
Q 046850 469 NKILIMAAGAIDSIIEVLQSGK----TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATAL 544 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~lL~~~~----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 544 (686)
.+..| +...+..+...-..+. ...++...+.++..++..+-. -.. .+.++.|+.+++ .++.....++.+|
T Consensus 88 ~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~W-p~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 88 HRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNW-PEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTC-TTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccc-hHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 13222 2334444443321110 245677777777777655321 123 678999999986 5556677778888
Q ss_pred HHhcCC-----CC----cH-----HHHHHc--CcHHHHHHHhc-CCCchhHHHHHHHHHHHhCChhcHHHHHhCCCChHH
Q 046850 545 FNLAVY-----NA----NK-----ASVVVA--GAVPLLIELLM-DDKAGITDDALAVLALLLGCREGLEEIRKCRVLVPL 607 (686)
Q Consensus 545 ~nLs~~-----~~----~~-----~~iv~~--G~v~~Ll~lL~-~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i~~ 607 (686)
..|+.. .+ .+ ..+... .++..+...+. ..+..++..++.++.+....-. ...+.+... ++.
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~l-l~~ 239 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNI-LEL 239 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSH-HHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhH-HHH
Confidence 777631 11 11 122221 12233344443 2456788889999988765333 223444444 666
Q ss_pred HHH-HHhcCChHHHHHHHHHHHHhhcc
Q 046850 608 LID-LLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 608 Lv~-lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
+.+ ++ .++..+..|+.+|..+...
T Consensus 240 l~~~~l--~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 240 LSTKFM--TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHTHHH--HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHhC--CCHhHHHHHHHHHHHHHhC
Confidence 663 44 3788999999999998865
No 197
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=75.90 E-value=45 Score=39.93 Aligned_cols=169 Identities=14% Similarity=0.099 Sum_probs=98.0
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHhhcccc----ccccH-HHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 046850 438 IPFLVTLLSS----HDPRIQENAVTALLNLSI----FDNNK-ILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI 508 (686)
Q Consensus 438 i~~Lv~lL~s----~~~~~~~~A~~aL~nLs~----~~~~k-~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~ 508 (686)
+..+..++.+ .++.++..|+-+++.|.. +...+ ..++ .-+...+.+.+..+ +.+-+..++.+|.|+-..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRA-KEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcC-ChHHHHHHHHHhhccCCh
Confidence 4555666655 456677777777766642 21111 0111 11233344555677 788889999999998653
Q ss_pred chhhhHhhcCCCcHHHHHHhccc-------CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhc--CCCchhHH
Q 046850 509 DDCKVMIGGRPRAIPALVGLLRE-------GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLM--DDKAGITD 579 (686)
Q Consensus 509 ~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~--~~~~~v~~ 579 (686)
..++.|..++.. ...+++..|++||.++....+.. +-+.+++++. ..+.+++.
T Consensus 471 -----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 471 -----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp -----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHH
T ss_pred -----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHH
Confidence 356666666632 23478899999999998543211 2235666663 34666766
Q ss_pred HHHHHHHHHhCChhcHHHHHhCCCChHHHHHHHhc-CChHHHHHHHHHHHHhhccChH
Q 046850 580 DALAVLALLLGCREGLEEIRKCRVLVPLLIDLLRF-GSAKGKENSITLLLGLCKDGGE 636 (686)
Q Consensus 580 ~al~~L~nLa~~~~~~~~i~~~~~~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~ 636 (686)
.|+.+|.. ..|... . +..+...+.. .+..+.......|.+++....+
T Consensus 533 aA~~~Lm~--t~P~~~-------~-l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 533 RSCIVFFE--SKPSVA-------L-VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHH--TCCCHH-------H-HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHH--HCcCHH-------H-HHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 66555532 222211 1 4555555554 5666777777777777765533
No 198
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=75.14 E-value=29 Score=36.37 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHH-hCCHHHHHHhhcCCCHHHHHHHHHHhhccccccc--c-HHHHH--------
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAE-AGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDN--N-KILIM-------- 474 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~--~-k~~i~-------- 474 (686)
+...+..++.+|+.+.. +......+.. .+++..|...|.+.++.++..++.+|..++..+. + -..+.
T Consensus 71 d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 45678899999999987 3344444444 5789999999999999999999988877776543 3 33332
Q ss_pred --hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc---h----hhhHhhcCCCcHHHHHHhcccCCh
Q 046850 475 --AAGAIDSIIEVLQSGKTMEARENAAATIFSLSMID---D----CKVMIGGRPRAIPALVGLLREGTT 534 (686)
Q Consensus 475 --~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~---~----~~~~i~~~~g~i~~Lv~lL~~~~~ 534 (686)
+..-+..++..+..+.+.+.+..++..+-.+.... + -|..+.. .|..+.|-.+=..+++
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~-~GL~~il~~Lr~~~~~ 217 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LGLHQVLQELREIENE 217 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-TTHHHHHHHHTTCCCH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CChHHHHHHHhccCCh
Confidence 23467778888886657777777666666554433 2 3334444 5655555444333444
No 199
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=74.32 E-value=17 Score=38.92 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHH
Q 046850 448 HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVG 527 (686)
Q Consensus 448 ~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 527 (686)
++.....-|...+.....+=+. ....++..++++..+. +..+|..|+..|..+|.. ++ + ..++..|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~---i---~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-EN---L---PRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TC---H---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hh---h---hhHHHHHHH
Confidence 3455555555555544433222 0112456667777777 888999999999999987 43 3 336778999
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHH
Q 046850 528 LLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALL 588 (686)
Q Consensus 528 lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nL 588 (686)
||..+++.-....-.+|..|...++ .|.+..|+.-+..++..+++.++..|..=
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 9998887444444444444433221 23444555555445677888887777543
No 200
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=74.26 E-value=23 Score=42.49 Aligned_cols=218 Identities=18% Similarity=0.110 Sum_probs=135.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhcccccc-----c
Q 046850 395 TAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFD-----N 468 (686)
Q Consensus 395 ~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~-----~ 468 (686)
.+..++..+-+++.+.+.+|-..|..+-. +++. ...+..+|. +.++.++-.|+.+|.+..... .
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 45666777777788878888887766544 4443 334444554 458899999999998875422 2
Q ss_pred cHHHHHhcCcHHHHHHHHcCC----CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHH
Q 046850 469 NKILIMAAGAIDSIIEVLQSG----KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATAL 544 (686)
Q Consensus 469 ~k~~i~~~g~l~~Lv~lL~~~----~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL 544 (686)
....-++...+..+...-..+ .+...+...+.++..+...+-.. .. .+.++-++.++.. ++......+..|
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~W-p~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HW-PTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TC-TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hc-cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 222333444555555554332 13556667777777776542111 24 6788888888864 455667778888
Q ss_pred HHhcCC--C-------CcH-----HHHHHcCcHHHHHHH----h-cCCCchhHHHHHHHHHHHhCChhcHHHHHhCCCCh
Q 046850 545 FNLAVY--N-------ANK-----ASVVVAGAVPLLIEL----L-MDDKAGITDDALAVLALLLGCREGLEEIRKCRVLV 605 (686)
Q Consensus 545 ~nLs~~--~-------~~~-----~~iv~~G~v~~Ll~l----L-~~~~~~v~~~al~~L~nLa~~~~~~~~i~~~~~~i 605 (686)
..|+.. . ..| ..+.. . ++.++.+ | ...++.+...++.+|..+...-+ -..+.+.+. +
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~-~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~l-l 249 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCN-E-FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKL-I 249 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSH-H
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchH-H
Confidence 877643 1 011 12222 1 3444444 4 23567788889999999987543 345666665 7
Q ss_pred HHHH-HHHhcCChHHHHHHHHHHHHhhcc
Q 046850 606 PLLI-DLLRFGSAKGKENSITLLLGLCKD 633 (686)
Q Consensus 606 ~~Lv-~lL~~~s~~~ke~A~~~L~~L~~~ 633 (686)
+.|+ .+| .++..+..|+.+|..+.+.
T Consensus 250 ~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 250 STLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 7774 565 6789999999999999875
No 201
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=73.04 E-value=5.5 Score=31.16 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=33.8
Q ss_pred CCCCCcccccCcccCcCceEcc----CcccccHHhHHHHHhh----CCCCCCC
Q 046850 279 NIPDEFRCPISLDLMRDPVIVA----SGHTYDRNSIAQWINS----GHHTCPK 323 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~dPv~~~----cght~cr~ci~~w~~~----~~~~CP~ 323 (686)
..-..+.|.+|.+-+.|.-.+- -+|.||--|-...++. +...||-
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 3456789999999999876553 4699999998888775 3445664
No 202
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=71.91 E-value=1.7 Score=35.22 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=38.7
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccCC
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHM 331 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~ 331 (686)
..--+.|.-|..-.+. .+....|-.|+.|+...+.. ...||+|+.+++..
T Consensus 25 ~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred ccCcccChhhccccCC-eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 3455789888877664 34466788899999988776 67899999999764
No 203
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.46 E-value=11 Score=33.69 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLSS------HDPRIQENAVTALLNLS 464 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~nLs 464 (686)
+..+..|.+.|+++++.+|..|+..|-.+.+.. ......++...++..|+.++.. .+..++..++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999999863 3455667777888889988863 47889998888876655
No 204
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=70.44 E-value=9.1 Score=34.90 Aligned_cols=71 Identities=10% Similarity=0.068 Sum_probs=55.3
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhcC-CCHHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLSS-HDPRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLs 464 (686)
.++..|.+.|+++++.+|..|+..|-.+.+.. ......++...++..|+.++.. .++.+++.++..+..-+
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 46678889999999999999999999999853 3345566666777788888865 67888888888776554
No 205
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=69.78 E-value=38 Score=41.19 Aligned_cols=210 Identities=11% Similarity=0.044 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhh--cCCCHHHHHHHHHHhhccccc-----cccHHHHHhcCcH
Q 046850 407 SPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLL--SSHDPRIQENAVTALLNLSIF-----DNNKILIMAAGAI 479 (686)
Q Consensus 407 ~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL--~s~~~~~~~~A~~aL~nLs~~-----~~~k~~i~~~g~l 479 (686)
+.+.|.+|-..|..+-.. ++ +...+...| .+.+..++-.|+.+|.|.... +......++...+
T Consensus 26 ~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll 95 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVM 95 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 677788888888877553 21 333344433 456788999999999886532 1222222233344
Q ss_pred HHHHHHHcCC--CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCC---CC--
Q 046850 480 DSIIEVLQSG--KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVY---NA-- 552 (686)
Q Consensus 480 ~~Lv~lL~~~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~---~~-- 552 (686)
..+...-... ....++...+.++..+...+-. . .. .+.++.|+.++.. ++.....++.+|..|+.. .+
T Consensus 96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~--~W-p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWP-Q--HW-PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-T--TC-TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-c--cc-hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 4433321110 2567788888888888765322 1 24 6789999999876 555677788888888642 11
Q ss_pred --cHHH-----HHHc--CcHHHHHHHhcC-------------------CCchhHHHHHHHHHHHhCChhcHHHHHhCC-C
Q 046850 553 --NKAS-----VVVA--GAVPLLIELLMD-------------------DKAGITDDALAVLALLLGCREGLEEIRKCR-V 603 (686)
Q Consensus 553 --~~~~-----iv~~--G~v~~Ll~lL~~-------------------~~~~v~~~al~~L~nLa~~~~~~~~i~~~~-~ 603 (686)
.+.. +.+. .+++.+..+|.. .+..++..++.++.+..... ....+.+.. .
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi-~~~~i~~~~~~ 249 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWV-SMSHITAENCK 249 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTS-CHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhcc-CHHHHHhccch
Confidence 1211 1111 122333333322 12234555566665544422 122333432 1
Q ss_pred ChHHHHHHHhcCChHHHHHHHHHHHHhhccC
Q 046850 604 LVPLLIDLLRFGSAKGKENSITLLLGLCKDG 634 (686)
Q Consensus 604 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~ 634 (686)
+++.+..++ .++..+..|+.+|..++...
T Consensus 250 ll~~l~~~l--~~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 250 LLEILCLLL--NEQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHGG--GCTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHHHhCC
Confidence 255566555 46788999999999999865
No 206
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=68.90 E-value=1.1e+02 Score=36.29 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=109.3
Q ss_pred HHHHHHhhcC---CHHHHHHHHHHHHHHHhhC-ch----hHHHHHHhCCHHHHHHhhc-CCCHHHHHHHHHHhhcccccc
Q 046850 397 EFLVGKLAMG---SPEIQSQAAYELRLLAKTG-MD----NRRIIAEAGAIPFLVTLLS-SHDPRIQENAVTALLNLSIFD 467 (686)
Q Consensus 397 ~~Lv~~L~s~---~~~~q~~al~~L~~La~~~-~~----~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLs~~~ 467 (686)
......|.+. +.+++.-|+..|.+..+.- ++ .+..+. ..++..+...-. ....-++...+.+|..+....
T Consensus 43 ~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~ 121 (980)
T 3ibv_A 43 KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQL 121 (980)
T ss_dssp HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh
Confidence 3444556543 6888888888888766522 23 333322 223333333110 234567777777777776432
Q ss_pred ccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---------ch--h-----hhHhhcC--CCcHHHHHHhc
Q 046850 468 NNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSMI---------DD--C-----KVMIGGR--PRAIPALVGLL 529 (686)
Q Consensus 468 ~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~---------~~--~-----~~~i~~~--~g~i~~Lv~lL 529 (686)
-.. ...+.++.++..+..+...........+|..++.. ++ . +..+... ..+++....+|
T Consensus 122 ~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL 198 (980)
T 3ibv_A 122 YPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMM 198 (980)
T ss_dssp TTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred Ccc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHH
Confidence 100 12356777777776641213444455555533211 00 0 2222210 01133333444
Q ss_pred c----cCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC---ChhcHHHHH
Q 046850 530 R----EGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG---CREGLEEIR 599 (686)
Q Consensus 530 ~----~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~---~~~~~~~i~ 599 (686)
. ..++.+...++.+|......- ....++..+.++.+.++|.+ +.+++.|+.+|..+.. .++.+..++
T Consensus 199 ~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 199 LAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 3 367788888999998887753 34556667888888888865 6889999999999864 344444444
No 207
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=68.05 E-value=58 Score=31.44 Aligned_cols=140 Identities=13% Similarity=0.048 Sum_probs=91.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhhhHhhc
Q 046850 439 PFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSM-IDDCKVMIGG 517 (686)
Q Consensus 439 ~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~ 517 (686)
+....+..++..+++..|+.+|..+ . . ....++.+...+....+-.+++.++.++..++. .+ .
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~-------p 137 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE-------Y 137 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC-------T
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC-------H
Confidence 4445566777789999999988877 2 1 122455555533333388999999999988875 21 1
Q ss_pred CCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC---cHHHHHHcCcHHHHHHHhcCCCchhHHHHHHHHHHHhC-Chh
Q 046850 518 RPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA---NKASVVVAGAVPLLIELLMDDKAGITDDALAVLALLLG-CRE 593 (686)
Q Consensus 518 ~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~---~~~~iv~~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa~-~~~ 593 (686)
...++.+.....+++..++..|...+.--+..+. +... +++.|-.+..+++.-++......|..++. +|+
T Consensus 138 -e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 138 -KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp -TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 2267888889999999999998888653222211 1111 34444444466777788888889999997 555
Q ss_pred cHHHHHh
Q 046850 594 GLEEIRK 600 (686)
Q Consensus 594 ~~~~i~~ 600 (686)
-...+++
T Consensus 212 ~V~~~~~ 218 (240)
T 3l9t_A 212 LVKIELK 218 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 208
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=65.03 E-value=35 Score=32.98 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=86.4
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHH-hhcCCCHHHHHHHHHHhhcccc-ccccHHHHHhcCc
Q 046850 401 GKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVT-LLSSHDPRIQENAVTALLNLSI-FDNNKILIMAAGA 478 (686)
Q Consensus 401 ~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~~~~~A~~aL~nLs~-~~~~k~~i~~~g~ 478 (686)
.+..+...++|..|+..|..+ . .. ...++.+.. +-..++-.+++.+..++..++. .... ..
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~---~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------~~ 140 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S---KD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------KA 140 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T---TS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-------TT
T ss_pred HHHhCcchHHHHHHHHHHHhc-c---Cc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-------HH
Confidence 344466678888888866555 2 11 124566666 4455788999999999888864 2111 25
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCC
Q 046850 479 IDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 479 l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
++.+.....++ +..+|..|+..+.--+.....+ ....-++|.|-.+..+++.-+++...++|..++..++
T Consensus 141 l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 141 LPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp HHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 77788888888 9999998887764322211111 1102245566666667778899999999999998775
No 209
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=64.71 E-value=28 Score=41.62 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-----CCHHHHHHHHHHhhccccccccHHHHHhcCcHH
Q 046850 406 GSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-----HDPRIQENAVTALLNLSIFDNNKILIMAAGAID 480 (686)
Q Consensus 406 ~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-----~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~ 480 (686)
.++..+..|++++..++..-......-.-..+++.|+.+... +.+.++..++++++.++..-........ .+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 578888899999998875332221111112244445443322 2233444577888877643111112222 3677
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhh-----cCCCcHHHHH----HhcccCChHHHHHHHHHHHHhcCCC
Q 046850 481 SIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIG-----GRPRAIPALV----GLLREGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 481 ~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~-----~~~g~i~~Lv----~lL~~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.++..+.++ +..++..|+.++.+++... +..+. .....++.++ .++..-+.+-......++..+....
T Consensus 544 ~ll~~l~~~-~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHTTSS-CHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 778788877 8999999999999998742 33332 1012344443 4444434444455556666665433
No 210
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=64.24 E-value=12 Score=34.43 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 046850 393 KMTAEFLVGKLAMGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPFLVTLLSS------HDPRIQENAVTALLNLS 464 (686)
Q Consensus 393 ~~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~nLs 464 (686)
+..+..|.+.|+++++.+|..|+..|-.+.+.. ......+....++..|+.++.. .+..++..++..+..-+
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999853 3455567777788889998863 46788998888886655
No 211
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=64.19 E-value=52 Score=33.02 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHhhccccccccHHHHHh--cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhH-hh-cCCCcHHH
Q 046850 449 DPRIQENAVTALLNLSIFDNNKILIMA--AGAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVM-IG-GRPRAIPA 524 (686)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~~~k~~i~~--~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~-i~-~~~g~i~~ 524 (686)
+.+..+.|+..|..+|.+-..-.+|++ ...+..|+ +.... +...++.|++++..-.++...... +. .....+..
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 455678899999999988766555664 34455554 33443 778999999999998887743322 21 22455555
Q ss_pred HHHhccc-------CChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcCC--CchhHHHHHHHHHHHh
Q 046850 525 LVGLLRE-------GTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMDD--KAGITDDALAVLALLL 589 (686)
Q Consensus 525 Lv~lL~~-------~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~~--~~~v~~~al~~L~nLa 589 (686)
+..-|.. ....+.+.-+++|-.|...+.. + ....+..|.+++... +..++.+++.++..+-
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 5544432 2346677788899999887631 1 244667788877655 7888988888888774
No 212
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=63.48 E-value=13 Score=33.00 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=55.1
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCch-hHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMD-NRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs 464 (686)
..++.+.+.|+++++.+|..|+..|..+.+.... ....+....++..|+.+++..++.++..++..+...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999885432 2344555567777888887788899998888887654
No 213
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=60.72 E-value=72 Score=38.15 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=90.5
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC-------CCHHHHHHHHHHhhccccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS-------HDPRIQENAVTALLNLSIF 466 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s-------~~~~~~~~A~~aL~nLs~~ 466 (686)
.....|.+.+.+++.+.+..++++|.|+... ..++.|.+++.. ....++..|+++|.+++..
T Consensus 440 ~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 440 PLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence 4555666777788888888899999888752 256777777742 2457889999999999853
Q ss_pred cccHHHHHhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc-CChHHHHHHHHHH
Q 046850 467 DNNKILIMAAGAIDSIIEVLQS-GKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE-GTTAGKKDAATAL 544 (686)
Q Consensus 467 ~~~k~~i~~~g~l~~Lv~lL~~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~Al~aL 544 (686)
... -+-+.+..++.+ ..+.|+|..|+.+|..-... ...+..+...+.. .+..+.......|
T Consensus 509 ~p~-------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~----------~~~l~~ia~~l~~E~~~QV~sfv~S~l 571 (1056)
T 1lsh_A 509 DPR-------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPS----------VALVSMVAVRLRREPNLQVASFVYSQM 571 (1056)
T ss_dssp CHH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC----------HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred chH-------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC----------HHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 221 123345666643 23889999999888764433 2345555666654 5678888899999
Q ss_pred HHhcCCCC
Q 046850 545 FNLAVYNA 552 (686)
Q Consensus 545 ~nLs~~~~ 552 (686)
.+|+....
T Consensus 572 ~sla~s~~ 579 (1056)
T 1lsh_A 572 RSLSRSSN 579 (1056)
T ss_dssp HHHTTCCS
T ss_pred HHHHhcCC
Confidence 99987654
No 214
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.59 E-value=18 Score=35.52 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHH-hhcCCCHHHHHHHHHHhhccccccc-cHHHHHhcCcHHHHHHHHc
Q 046850 410 IQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVT-LLSSHDPRIQENAVTALLNLSIFDN-NKILIMAAGAIDSIIEVLQ 487 (686)
Q Consensus 410 ~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~~~~~A~~aL~nLs~~~~-~k~~i~~~g~l~~Lv~lL~ 487 (686)
.+.-++..+|.++.+...+ +.+..++. .+.+.++..+.-+++++.|+-.+.. ++..+........+++.+.
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~ 142 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 142 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHH
Confidence 3666888888888755432 23333332 3345577889999999999998888 5766655434455555442
Q ss_pred CC-------CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhccc---------CChHHHHHHHHHHHHhcCCC
Q 046850 488 SG-------KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLRE---------GTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 488 ~~-------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---------~~~~~~~~Al~aL~nLs~~~ 551 (686)
+. .+..++..++..++|++..-..... . ......+++++.. .+.+....++.||++|...+
T Consensus 143 ~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--~-~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 143 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--D-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--C-TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--h-HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 21 1456888999999999875321110 1 2344556665542 36788888999999998644
Q ss_pred C
Q 046850 552 A 552 (686)
Q Consensus 552 ~ 552 (686)
+
T Consensus 220 ~ 220 (253)
T 3gae_A 220 P 220 (253)
T ss_dssp G
T ss_pred H
Confidence 3
No 215
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=59.25 E-value=2.1 Score=27.99 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=12.5
Q ss_pred CCcccccCcccCcCce
Q 046850 282 DEFRCPISLDLMRDPV 297 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv 297 (686)
+-|.||+|+..+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3589999998887764
No 216
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=57.40 E-value=28 Score=36.79 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHH-HhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHHHHHHcC
Q 046850 411 QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLV-TLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSIIEVLQS 488 (686)
Q Consensus 411 q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~ 488 (686)
+.-++..||.++.+...+ +.+..++ ..+.+..+..+.-++++|.|+-.+... +..+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 666888888888754432 2233333 234456788899999999999988875 4444333345566665532
Q ss_pred CC-------CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc---------cCChHHHHHHHHHHHHhcCCCC
Q 046850 489 GK-------TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR---------EGTTAGKKDAATALFNLAVYNA 552 (686)
Q Consensus 489 ~~-------~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~Al~aL~nLs~~~~ 552 (686)
.. +..++..++..++|++..-.... .. ......+++++. ..+.+....++.||++|....+
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--~~-~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC--SC-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc--ch-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 21 34688899999999987542111 11 234556666665 2477899999999999986443
No 217
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=56.99 E-value=24 Score=31.15 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=56.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|.++++..+..|+.+|-.+..|.+......+.. ...+.-|+.++...++.+++++..++..-..
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 6677777888899999999999988888887776656544 4567778888877889999998888776554
No 218
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=56.56 E-value=4.3 Score=33.17 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=11.8
Q ss_pred cccHHhHHHHHhh
Q 046850 304 TYDRNSIAQWINS 316 (686)
Q Consensus 304 t~cr~ci~~w~~~ 316 (686)
.|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999986
No 219
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=55.83 E-value=4.5 Score=33.00 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.7
Q ss_pred cccHHhHHHHHhh
Q 046850 304 TYDRNSIAQWINS 316 (686)
Q Consensus 304 t~cr~ci~~w~~~ 316 (686)
.|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999985
No 220
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.50 E-value=31 Score=30.79 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=55.7
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhCch-hHHHHHHhCCHHHHHHhhcC------CCHHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLAMGSPEIQSQAAYELRLLAKTGMD-NRRIIAEAGAIPFLVTLLSS------HDPRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~s~~~~~q~~al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~s------~~~~~~~~A~~aL~nLs 464 (686)
..++.|.+.|.+.++.+|..|+..|-.+.+.... ....|....++..|+++++. .+..++..++..+..-+
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999885433 24556666778888888863 57889998888886655
No 221
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=51.84 E-value=35 Score=35.23 Aligned_cols=131 Identities=17% Similarity=0.126 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHhCCHHHHH-HhhcCCCHHHHHHHHHHhhcccccccc-HHHHHhcCcHHHHHHHHcC
Q 046850 411 QSQAAYELRLLAKTGMDNRRIIAEAGAIPFLV-TLLSSHDPRIQENAVTALLNLSIFDNN-KILIMAAGAIDSIIEVLQS 488 (686)
Q Consensus 411 q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv-~lL~s~~~~~~~~A~~aL~nLs~~~~~-k~~i~~~g~l~~Lv~lL~~ 488 (686)
+.-++..||.++.+.+.+ +.+..++ ..+.+..+..+.-+++++.|+-.+... +..+........+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 666888898888754422 2333333 233456788899999999999988874 4444332223444554422
Q ss_pred ----CC---CHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcc---------cCChHHHHHHHHHHHHhcCCC
Q 046850 489 ----GK---TMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLR---------EGTTAGKKDAATALFNLAVYN 551 (686)
Q Consensus 489 ----~~---~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~Al~aL~nLs~~~ 551 (686)
.. +..++..++..++|++..-.... .. ......+++++. ..+.+....++.||++|....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--~~-~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC--SC-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc--ch-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 11 35688899999999987542211 11 334566666665 257789999999999998643
No 222
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=51.22 E-value=40 Score=30.55 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=54.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD-GSLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-~~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|.++++.++..|+.+|-.+..|.+......+.. ...+.-|+.++.. .++.+|+++..+++.-..
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 5667777778899999999999999988877776666654 5577788888875 467899888777766554
No 223
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.11 E-value=26 Score=29.94 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=48.3
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHcCCCCccchhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHH
Q 046850 10 GSSSLLPTGTLLESLIHTSHEISSMENLPSVQMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRR 86 (686)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ 86 (686)
|+||-+.-.++++.+.....++...-. .+..|+-+.+..+|+.. ||+.|+... +++.++..|-.|-.+|+.
T Consensus 4 ~~~~~~~~~~~i~~l~~~l~~~l~~~~-~~~~k~~~~D~~KRL~~---LfdkLn~~~--Ls~~v~~~L~~l~~al~~ 74 (118)
T 2yru_A 4 GSSGVIESETLIEDVLRPLEQALEDCH-GHTKKQVCDDISRRLAL---LREQWAGGK--LSIPVKKRMALLVQELLH 74 (118)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHH---HHHHHHHTC--SCHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHH---HHHHHhcCC--CCHHHHHHHHHHHHHHHc
Confidence 345554555666666666666543110 13345668999999888 688898776 688888889888888874
No 224
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=50.87 E-value=77 Score=37.88 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHhccCch---hhhHhhcCCCcHHHHHHhcccCC-----hHHHHHHHHHHHHhcCCCCcHHHHHHcC
Q 046850 490 KTMEARENAAATIFSLSMIDD---CKVMIGGRPRAIPALVGLLREGT-----TAGKKDAATALFNLAVYNANKASVVVAG 561 (686)
Q Consensus 490 ~~~e~~~~aa~~L~~Ls~~~~---~~~~i~~~~g~i~~Lv~lL~~~~-----~~~~~~Al~aL~nLs~~~~~~~~iv~~G 561 (686)
.+....+.++++++.++..-. .+..+. .+++.|+.+..... ..+....+++++..+..-.....+.. .
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp---~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-~ 566 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV---TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-T 566 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH---HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-H
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH---HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-H
Confidence 378999999999999974321 233443 37888888875442 12233344555555433222222222 2
Q ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHHhCChhcHHHHHh--CCCChHHHHHHHhc-------CChHHHHHHHHHHHHhhc
Q 046850 562 AVPLLIELLMDDKAGITDDALAVLALLLGCREGLEEIRK--CRVLVPLLIDLLRF-------GSAKGKENSITLLLGLCK 632 (686)
Q Consensus 562 ~v~~Ll~lL~~~~~~v~~~al~~L~nLa~~~~~~~~i~~--~~~~i~~Lv~lL~~-------~s~~~ke~A~~~L~~L~~ 632 (686)
++..|++.+.+.++.+++.|+.++..+|. +++..++. .|...|.+-.+++. -.+........++..+..
T Consensus 567 vl~~L~~~m~~~~~~vq~aA~~af~~i~~--~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 567 VVNKLFEFMHETHDGVQDMACDTFIKIAQ--KCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHHTTCCSTTHHHHHHHHHHHHHH--HTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH--HHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 44555566677788999999999999985 33333322 12113333334332 244544555555555554
Q ss_pred cC
Q 046850 633 DG 634 (686)
Q Consensus 633 ~~ 634 (686)
.-
T Consensus 645 ~~ 646 (1073)
T 3gjx_A 645 AQ 646 (1073)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 225
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.64 E-value=30 Score=33.19 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=57.6
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccccc--HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN--KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLSM 507 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~ 507 (686)
++..|.+-|.+.++.++..|+.+|-.+..+... ...|.....++.|+++++...+.+++..++..+...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 566788888899999999999999999887655 56666777888888888776578899998888877753
No 226
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.41 E-value=11 Score=32.38 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCcccccCcccCcC---ceEccCcccccHHhHHHHHhhCCCCCCCCCccccCCC
Q 046850 282 DEFRCPISLDLMRD---PVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIHMA 332 (686)
Q Consensus 282 ~~~~Cpic~~~m~d---Pv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~~~ 332 (686)
+-|+|..|...+.+ +....-|..||..|..+.|.. ...|..|++++....
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 45999999999863 445578899999999887743 237999998876443
No 227
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=47.22 E-value=0.87 Score=37.17 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=26.4
Q ss_pred cccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 284 FRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 284 ~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
..||.|...|.. .-|+.+|..|=..+.. ...||.|++++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc--cccCcchhhHHH
Confidence 799999988753 2344447766332211 467999999874
No 228
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.95 E-value=33 Score=30.55 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=55.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc------CCHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD------GSLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------~~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|.++++.++..|+.+|-.+..|.+......+.. ..++.-|+.++.. .++.+|+++..+++.-..
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6677777888999999999999999999987777677665 5678888888864 267888887776665543
No 229
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.45 E-value=40 Score=30.82 Aligned_cols=71 Identities=20% Similarity=0.113 Sum_probs=55.2
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc------CCHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD------GSLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------~~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|.++++.++..|+.+|-.+..|.+......+.. ..++.-|+.++.. .+..+|+++..+++.-..
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777888999999999999999999987777666665 5678888888863 257889888777766544
No 230
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=44.15 E-value=6.3 Score=24.50 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=10.7
Q ss_pred CCcccccCcccCcCc
Q 046850 282 DEFRCPISLDLMRDP 296 (686)
Q Consensus 282 ~~~~Cpic~~~m~dP 296 (686)
..|.||+|+..|-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 457788888777665
No 231
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=43.18 E-value=1.9e+02 Score=28.90 Aligned_cols=143 Identities=7% Similarity=-0.018 Sum_probs=90.8
Q ss_pred HHHHhhcC------CHHHHHHHHHHHHHHHhhCchhHHHHHHh--CCHHHHHHhhcCCCHHHHHHHHHHhhcccccccc-
Q 046850 399 LVGKLAMG------SPEIQSQAAYELRLLAKTGMDNRRIIAEA--GAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN- 469 (686)
Q Consensus 399 Lv~~L~s~------~~~~q~~al~~L~~La~~~~~~r~~i~~~--g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~- 469 (686)
+...++++ +.+.-..|+..|..++. +.+.-..|++. ..+..|+ +..+.++.+++.|..+|...-.+++.
T Consensus 27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~A 104 (315)
T 3qml_C 27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPV 104 (315)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHH
Confidence 34455555 44456678888888886 56666666653 2333333 33446778999999999887777655
Q ss_pred HHHHHh--cCcHHHHHHHHcC----C--CCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccC--ChHHHHH
Q 046850 470 KILIMA--AGAIDSIIEVLQS----G--KTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREG--TTAGKKD 539 (686)
Q Consensus 470 k~~i~~--~g~l~~Lv~lL~~----~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~ 539 (686)
...|.+ ...+..++.-|.. + ........-+++|..|...+ ..+ . ...+..|.+++..+ ++.++..
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F-~-~~~m~~L~~ly~~~~~d~~~k~K 179 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDL-P-IYSTVVLQNVYERNNKDKQLQIK 179 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC----CCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhh-h-hccHHHHHHHHccCCCCHHHHHH
Confidence 444443 2555555544433 1 25567778888888888876 222 2 33567777777766 7788888
Q ss_pred HHHHHHHhc
Q 046850 540 AATALFNLA 548 (686)
Q Consensus 540 Al~aL~nLs 548 (686)
++..+..+-
T Consensus 180 vl~li~d~f 188 (315)
T 3qml_C 180 VLELISKIL 188 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888777665
No 232
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=43.07 E-value=47 Score=29.58 Aligned_cols=71 Identities=18% Similarity=0.089 Sum_probs=55.5
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhc------CCHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTD------GSLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------~~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|.+.++.++..|+.+|-.+..|.+......+.. ..++.-|+.++.. .++.+|+++..+++.-..
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 6677777778899999999999999999888877666665 5578888888863 467888887777766544
No 233
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=41.84 E-value=22 Score=34.01 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=55.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHhhcccccccc--HHHHHhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 046850 437 AIPFLVTLLSSHDPRIQENAVTALLNLSIFDNN--KILIMAAGAIDSIIEVLQSGKTMEARENAAATIFSLS 506 (686)
Q Consensus 437 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~--k~~i~~~g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls 506 (686)
++..|.+-|.+.++.++..|+.+|-.+..+... ...+.....+..|+.++.+..+.+++..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 455677778889999999999999999887644 5666666788888888876657888888887776654
No 234
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=39.05 E-value=2.2e+02 Score=25.72 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=50.3
Q ss_pred HHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhccCCchhHHHhhhH--HHHHHHHHHHHHHHHH
Q 046850 46 STMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCKDGSSLWGLMQIE--LVSNQFYVLVKEMGRA 123 (686)
Q Consensus 46 ~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyll~~~~--~i~~~f~~~~~~l~~~ 123 (686)
++..++..+|..-++||.... | .|..-..|+.-+.-|..+..+.+.+... |-++.++ .+...+..+.+.|...
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~-l-~~gE~eeLe~e~~rL~nae~l~~~~~~a---~~~L~~~e~~~~~~L~~a~~~L~~l 82 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVS-P-DPGEEEGLNTELSRLSNLHTIAQAAAGG---VELLSDGDLNAAGLIGEAVRALNAG 82 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-C-CCChHHHHHHHHHHHHCHHHHHHHHHHH---HHHHhCCcchHHHHHHHHHHHHHHH
Confidence 567789999999999998776 3 2344566777777777777777776432 3333332 5777777777777664
Q ss_pred h
Q 046850 124 L 124 (686)
Q Consensus 124 L 124 (686)
-
T Consensus 83 ~ 83 (175)
T 4abx_A 83 A 83 (175)
T ss_dssp H
T ss_pred H
Confidence 3
No 235
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=38.41 E-value=63 Score=28.96 Aligned_cols=71 Identities=8% Similarity=0.008 Sum_probs=52.7
Q ss_pred hhHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhC-chhHHHHHHhCCHHH-HHHhhcC---CCHHHHHHHHHHhhccc
Q 046850 394 MTAEFLVGKLA-MGSPEIQSQAAYELRLLAKTG-MDNRRIIAEAGAIPF-LVTLLSS---HDPRIQENAVTALLNLS 464 (686)
Q Consensus 394 ~~i~~Lv~~L~-s~~~~~q~~al~~L~~La~~~-~~~r~~i~~~g~i~~-Lv~lL~s---~~~~~~~~A~~aL~nLs 464 (686)
.++..|.+.|+ ++++.+|..|+..|-.+.+.. ......++...++.. |+.++.. .+..+++.++..+..-+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 46678888998 589999999999999999854 444555666677776 7787742 34578888887776554
No 236
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=37.23 E-value=20 Score=30.62 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=37.0
Q ss_pred CCCcccccCcccCcC-ceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMRD-PVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~d-Pv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
++-|.|..|...+.. +....-|..||..|..+.+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 356999999998875 5556789999999987654 4679999988763
No 237
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=36.55 E-value=11 Score=26.49 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=12.0
Q ss_pred CCCCCCcccccCcc
Q 046850 278 PNIPDEFRCPISLD 291 (686)
Q Consensus 278 ~~~~~~~~Cpic~~ 291 (686)
.++|+++.||+|..
T Consensus 25 ~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 25 DQLPDDWCCPVCGV 38 (46)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCcCCCC
Confidence 36899999999985
No 238
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.47 E-value=57 Score=31.20 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=54.8
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|.+.++.++..|+.+|-.+..|.+......+.. ...+..|..++... ++.+|+++..+++.-..
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN-KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5677777888999999999999999988887766666655 45677787777654 56889888877776554
No 239
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.17 E-value=60 Score=30.83 Aligned_cols=71 Identities=13% Similarity=0.137 Sum_probs=53.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDG-SLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~-~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|.+.++.++..|+.+|-.+..+.+......+.. ...+.-|+.++.+. ++.+|+++..+++.-..
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 5666677777899999999999999999887766666554 45777888887765 57888887777666543
No 240
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.38 E-value=2.4 Score=33.63 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=22.3
Q ss_pred cccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 284 FRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 284 ~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
..||.|...|.. .-+..+|..|=..+ .. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~-~~-~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDF-SL-QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEE-EE-EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccC-CC-cccCcchhhHHH
Confidence 578888877642 22233355552211 11 237888888774
No 241
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=32.72 E-value=16 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.935 Sum_probs=12.7
Q ss_pred CCCCCCCcccccCcc
Q 046850 277 LPNIPDEFRCPISLD 291 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~ 291 (686)
..++|+++.||+|..
T Consensus 30 f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 30 FEDLPDDWACPVCGA 44 (52)
T ss_dssp TTSSCTTCCCSSSCC
T ss_pred hHHCCCCCcCCCCCC
Confidence 457899999999985
No 242
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=32.60 E-value=1.9e+02 Score=28.22 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=65.8
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh--------cC
Q 046850 478 AIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL--------AV 549 (686)
Q Consensus 478 ~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL--------s~ 549 (686)
+++.++.+-.+. +.++|...+..|...+..+ ..+ . ..+++.|..++.++++.+.+.++.+..++ +.
T Consensus 54 ~l~~il~~~~~~-~~~vrk~~~~Fi~e~~~~k---~~l-~-~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~ 127 (257)
T 3gs3_A 54 FLESVLSLAHDS-NMEVRKQVVAFVEQVCKVK---VEL-L-PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS 127 (257)
T ss_dssp HHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHC---GGG-H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHHHHHHHHH---HHH-H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444443344 7788888888887776332 111 1 34788888899888888887776664444 33
Q ss_pred CCCc---HHHHHH--cCcHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 046850 550 YNAN---KASVVV--AGAVPLLIELLMDDKAGITDDALAVLALLL 589 (686)
Q Consensus 550 ~~~~---~~~iv~--~G~v~~Ll~lL~~~~~~v~~~al~~L~nLa 589 (686)
++.. .....+ ...=..++.++.+.+.+++..|+..+..+.
T Consensus 128 ~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 128 LMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 3321 122222 123345666677788899999998888764
No 243
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=32.21 E-value=37 Score=33.21 Aligned_cols=111 Identities=6% Similarity=0.015 Sum_probs=70.3
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCchhHHHHHHhCCHHHHHHhhcC--------CCHHHHHHHHHHhhcccccccc-HHHHH
Q 046850 404 AMGSPEIQSQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLSS--------HDPRIQENAVTALLNLSIFDNN-KILIM 474 (686)
Q Consensus 404 ~s~~~~~q~~al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~s--------~~~~~~~~A~~aL~nLs~~~~~-k~~i~ 474 (686)
.+.++..+.-+++.+.|+..+....+..+........++..+.+ .+..++..+++++.|+|....+ +.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 35577889999999999988443356666543334444544321 3567888999999999864221 11
Q ss_pred hcCcHHHHHHHHcC----C----CCHHHHHHHHHHHHHhccCchhhhHhhc
Q 046850 475 AAGAIDSIIEVLQS----G----KTMEARENAAATIFSLSMIDDCKVMIGG 517 (686)
Q Consensus 475 ~~g~l~~Lv~lL~~----~----~~~e~~~~aa~~L~~Ls~~~~~~~~i~~ 517 (686)
+......+++++.. . .+.|+...++-+|++|...+.....+..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~ 227 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFAN 227 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTT
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhc
Confidence 12334556666652 1 2778999999999999876554444433
No 244
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.20 E-value=27 Score=29.99 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCCcccccCcccCc---CceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMR---DPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~---dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
++=|+|..|...+. .+....-|..||..|..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 45799999999885 3566688999999998877642 2379999988753
No 245
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=32.01 E-value=68 Score=26.29 Aligned_cols=53 Identities=17% Similarity=0.354 Sum_probs=38.6
Q ss_pred CCCCCCCcccccCcccCcCceEc-cCcc-----cccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 277 LPNIPDEFRCPISLDLMRDPVIV-ASGH-----TYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv~~-~cgh-----t~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
..-+++.++|||+++.-..-|.+ ..+. -|....+.+.... +..=|.+|.++..
T Consensus 21 f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~-~~~HPLSREpit~ 79 (102)
T 2kkx_A 21 LQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGE-GLPHPLTREPITA 79 (102)
T ss_dssp TTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHH-TCCCTTTCCCCCT
T ss_pred ccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhc-CCCCCCccCCCCH
Confidence 33467889999999999999977 2222 3788888888887 4445777777643
No 246
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=31.99 E-value=14 Score=26.88 Aligned_cols=15 Identities=33% Similarity=0.864 Sum_probs=12.7
Q ss_pred CCCCCCCcccccCcc
Q 046850 277 LPNIPDEFRCPISLD 291 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~ 291 (686)
..++|+++.||+|..
T Consensus 30 fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 30 FKDIPDDWVCPLCGV 44 (54)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred hhHCCCCCcCcCCCC
Confidence 347899999999985
No 247
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=31.09 E-value=29 Score=30.50 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=61.5
Q ss_pred cchhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHHHHHHHHHHHHHHHhcc-CC---chhHHHhhhHHHHHHHH
Q 046850 39 SVQMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTELFSVIRRVKLLIQGCK-DG---SSLWGLMQIELVSNQFY 114 (686)
Q Consensus 39 ~~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~-~~---Sklyll~~~~~i~~~f~ 114 (686)
.+-+++=..|+++++-+..+|+.|...+ -++.+..+-.......-+||+.|+..+. .| +++++ .++.+..
T Consensus 27 ~~Lk~hRe~LV~rl~~v~~LLD~LL~~g-vLs~EE~EiV~~~~T~~dKaRrLLDlV~sKGe~a~e~Ll-----~~Lqql~ 100 (144)
T 4e9m_A 27 QLLKSNRELLVTHIRNTQCLVDNLLKND-YFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFL-----YLLQQLA 100 (144)
T ss_dssp HHHHHTHHHHHHHCCCCHHHHHHHHHTT-SSCHHHHHHHHTSSSHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHhccCChHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHcc
Confidence 3445677789999999999999999876 4455545666667778899999988876 22 22222 4555666
Q ss_pred HHHHHHHHHhhcCCCCc
Q 046850 115 VLVKEMGRALDILPLSL 131 (686)
Q Consensus 115 ~~~~~l~~~L~~lp~~~ 131 (686)
+..-+|.-+|+-|-+.+
T Consensus 101 day~dl~pwl~ei~~~p 117 (144)
T 4e9m_A 101 DAYVDLRPWLLEIGFSP 117 (144)
T ss_dssp HHSGGGHHHHHHTTCC-
T ss_pred ccccchhHHHHHhCCCc
Confidence 77777777888876665
No 248
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.79 E-value=15 Score=34.10 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=37.4
Q ss_pred CCCcccccCcccCcC---ceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 281 PDEFRCPISLDLMRD---PVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 281 ~~~~~Cpic~~~m~d---Pv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
++-|+|..|...+.+ +....-|..||..|..+-+.. ...|+.|++.+..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 356999999998874 666678999999998876642 1269999887753
No 249
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.36 E-value=20 Score=28.43 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=12.7
Q ss_pred CCCCCCCcccccCcc
Q 046850 277 LPNIPDEFRCPISLD 291 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~ 291 (686)
..++|+++.||+|..
T Consensus 54 fedlPddW~CPvCga 68 (81)
T 2kn9_A 54 WDDIPDDWSCPDCGA 68 (81)
T ss_dssp TTTSCTTCCCTTTCC
T ss_pred hhHCCCCCcCCCCCC
Confidence 347899999999985
No 250
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.79 E-value=18 Score=26.02 Aligned_cols=15 Identities=27% Similarity=0.897 Sum_probs=12.6
Q ss_pred CCCCCCCcccccCcc
Q 046850 277 LPNIPDEFRCPISLD 291 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~ 291 (686)
..++|+++.||+|..
T Consensus 29 f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 29 FEDLPDDWVCPLCGA 43 (52)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred HhHCCCCCcCCCCCC
Confidence 347899999999975
No 251
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.39 E-value=5.5 Score=40.43 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=32.5
Q ss_pred CCCcccccCcccCcCceEc----cCcc--cccHHhHHHHHhhCCCCCCCCCcc
Q 046850 281 PDEFRCPISLDLMRDPVIV----ASGH--TYDRNSIAQWINSGHHTCPKSGQR 327 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~----~cgh--t~cr~ci~~w~~~~~~~CP~c~~~ 327 (686)
...-.||+|+..-.--|+. .-|+ -+|..|=..|--. ...||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 4567999999866544543 2453 4688888888554 7789999875
No 252
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=27.25 E-value=21 Score=26.62 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhcCCCCChh---HHHhhHHHHHHHHHHHHHHHhcc
Q 046850 54 LLYSLFDEIQETKCPLPPS---SILCLTELFSVIRRVKLLIQGCK 95 (686)
Q Consensus 54 ll~~lleel~~~~~~~~~~---~~~~l~~L~~~l~~ak~Ll~~c~ 95 (686)
-|..++||+... +.|. ...+-+-|...+..|+.||..|.
T Consensus 15 ~LL~VIeEmgkd---IrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKE---IRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTT---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---cchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 355677887521 1222 24688999999999999999996
No 253
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.13 E-value=18 Score=26.33 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.5
Q ss_pred CCCCCCCcccccCcc
Q 046850 277 LPNIPDEFRCPISLD 291 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~ 291 (686)
..++|+++.||+|..
T Consensus 30 f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 30 WEDIPADWVCPDCGV 44 (55)
T ss_dssp GGGSCTTCCCTTTCC
T ss_pred hhHCCCCCcCCCCCC
Confidence 346899999999985
No 254
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.93 E-value=65 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=27.0
Q ss_pred CCcccccCcccCcC-ceEccCcccccHHhHHHHHhh
Q 046850 282 DEFRCPISLDLMRD-PVIVASGHTYDRNSIAQWINS 316 (686)
Q Consensus 282 ~~~~Cpic~~~m~d-Pv~~~cght~cr~ci~~w~~~ 316 (686)
+=|.|..|...+.. +....-|..||..|..+.+..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 45899999988754 345567889999999888764
No 255
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=26.91 E-value=9.5 Score=29.85 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=31.2
Q ss_pred CcccccCcccCcCceEc----cCcc----cccHHhHHHHHhhCCCCCCCCCccccCCCCCCcH
Q 046850 283 EFRCPISLDLMRDPVIV----ASGH----TYDRNSIAQWINSGHHTCPKSGQRLIHMALIPNY 337 (686)
Q Consensus 283 ~~~Cpic~~~m~dPv~~----~cgh----t~cr~ci~~w~~~~~~~CP~c~~~l~~~~l~~n~ 337 (686)
.-.||+|+..+...-.+ .-+. --.|.-...-+..=.+.||.|+..+.-..+..+.
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTT
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHH
Confidence 34799999877532111 1111 1133334444444457899999988766665443
No 256
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=25.46 E-value=28 Score=39.03 Aligned_cols=52 Identities=25% Similarity=0.472 Sum_probs=38.3
Q ss_pred CCCCCCCcccccCcccCcCce--------E--ccCcccc--------------------cHHhHHHHHhh-------CCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPV--------I--VASGHTY--------------------DRNSIAQWINS-------GHH 319 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv--------~--~~cght~--------------------cr~ci~~w~~~-------~~~ 319 (686)
..-+|+--+|+-|+.-|.||- + +.||-.| |..|-.+|-+- ...
T Consensus 11 ~~i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~ 90 (657)
T 3ttc_A 11 TQIVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPV 90 (657)
T ss_dssp -CCCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTC
T ss_pred cccCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCC
Confidence 345688899999998887753 2 3677765 88999888763 235
Q ss_pred CCCCCCccc
Q 046850 320 TCPKSGQRL 328 (686)
Q Consensus 320 ~CP~c~~~l 328 (686)
.||.|+-.+
T Consensus 91 aCp~CGP~l 99 (657)
T 3ttc_A 91 ACPECGPYL 99 (657)
T ss_dssp CCTTTSCCE
T ss_pred cCcccCccc
Confidence 799998776
No 257
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.97 E-value=22 Score=27.40 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=12.2
Q ss_pred CCCCCCcccccCcc
Q 046850 278 PNIPDEFRCPISLD 291 (686)
Q Consensus 278 ~~~~~~~~Cpic~~ 291 (686)
.++|+++.||+|..
T Consensus 35 ~~lPddw~CP~Cga 48 (70)
T 1dx8_A 35 VDLSDSFMCPACRS 48 (70)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCCCCCC
Confidence 46899999999985
No 258
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.63 E-value=81 Score=24.87 Aligned_cols=40 Identities=8% Similarity=0.182 Sum_probs=25.7
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhh----CCCCCCCCCccccC
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINS----GHHTCPKSGQRLIH 330 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~----~~~~CP~c~~~l~~ 330 (686)
..+.+.|++|...|... ..+...... ..+.|+.|++.+..
T Consensus 25 ~~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 25 SAECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 34568999988877663 233333332 24679999887753
No 259
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=24.63 E-value=1.7e+02 Score=27.24 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=62.0
Q ss_pred CHHHHHHhhcC------CCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHcCCC--CHHHHHHHHHHHHHhccC
Q 046850 437 AIPFLVTLLSS------HDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQSGK--TMEARENAAATIFSLSMI 508 (686)
Q Consensus 437 ~i~~Lv~lL~s------~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~~~~--~~e~~~~aa~~L~~Ls~~ 508 (686)
.+|.++.++.. .|.......+.....|..+..-.-...-.-.+|+++.++-... ....|+.|+.+|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 67888877653 3555555555555555544322111111125677777664321 348999999999999865
Q ss_pred chhhhHhhcCCCcHHHHHHhcccCC--hHHHHHHHHHHHHh
Q 046850 509 DDCKVMIGGRPRAIPALVGLLREGT--TAGKKDAATALFNL 547 (686)
Q Consensus 509 ~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~Al~aL~nL 547 (686)
-.....-.. ..++..+.+.+.+++ .....-|+..|..|
T Consensus 121 ~~~~y~~L~-~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 121 YSRSYKTLA-PRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HTTTSTTHH-HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hCccCchHH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 433222222 445666666665543 34555566666655
No 260
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.48 E-value=73 Score=24.48 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=27.6
Q ss_pred CCCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 280 IPDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 280 ~~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
....-.|+-|.+...+.++..-|..|-.. -+.|-.|++.|.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~~~~~H~~---------CF~C~~C~~~L~ 52 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLRDRHRHPE---------CYVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECSSCEECTT---------TTSCSSSCCCHH
T ss_pred CCCCCccccCCCCccCcEEEECcceeCcC---------cCeeCCCCCCCC
Confidence 34556899999887776666666655333 467778877664
No 261
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=24.29 E-value=4.9e+02 Score=25.14 Aligned_cols=130 Identities=11% Similarity=0.175 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcCCCCcHHHHHHcCcHHHHHHHhcC
Q 046850 493 EARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAVYNANKASVVVAGAVPLLIELLMD 572 (686)
Q Consensus 493 e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~~~~~~~~iv~~G~v~~Ll~lL~~ 572 (686)
+.+.....-...|....+.. .+ ..+++.++++..+.+.++++-.+..|.-.+..... +...+++.|..+|.+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll---~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~----l~~~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LA---EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE----LLPHVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GH---HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHh-HH---HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcC
Confidence 55666666666665554322 22 34777788876666778888888888877733221 222356677777887
Q ss_pred CCchhHHHHHHHHHHH--------hCChhc---HHHHHhC-CCChHHHHHHHhcCChHHHHHHHHHHHHh
Q 046850 573 DKAGITDDALAVLALL--------LGCREG---LEEIRKC-RVLVPLLIDLLRFGSAKGKENSITLLLGL 630 (686)
Q Consensus 573 ~~~~v~~~al~~L~nL--------a~~~~~---~~~i~~~-~~~i~~Lv~lL~~~s~~~ke~A~~~L~~L 630 (686)
.++.+...+..+..++ |.++.. ....++. ..+=..++.++++++..+|-+|+..+-.+
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 7888888887777666 333221 1222211 11124555667778888999888876554
No 262
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.24 E-value=71 Score=28.79 Aligned_cols=46 Identities=7% Similarity=0.179 Sum_probs=34.6
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
++=|.|..|...+.+.-..--|..||..|..+-+. ..|..|++.+.
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccC
Confidence 45699999998887544456788999999877663 46888877664
No 263
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.72 E-value=19 Score=21.48 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=8.8
Q ss_pred CcccccCcccCc
Q 046850 283 EFRCPISLDLMR 294 (686)
Q Consensus 283 ~~~Cpic~~~m~ 294 (686)
...||+|.+.|-
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 347888888773
No 264
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=23.67 E-value=1.7e+02 Score=23.15 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=12.7
Q ss_pred CCCCCcccccCcccCcC
Q 046850 279 NIPDEFRCPISLDLMRD 295 (686)
Q Consensus 279 ~~~~~~~Cpic~~~m~d 295 (686)
.....|.|++|...|..
T Consensus 13 ~~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCCBCSSSCCBCSS
T ss_pred CCCcCeECCCCCCccCC
Confidence 34556999999887765
No 265
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=23.59 E-value=6.2e+02 Score=26.09 Aligned_cols=65 Identities=23% Similarity=0.220 Sum_probs=47.5
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhhhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHh
Q 046850 477 GAIDSIIEVLQSGKTMEARENAAATIFSLSMIDDCKVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNL 547 (686)
Q Consensus 477 g~l~~Lv~lL~~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nL 547 (686)
.+++.++.+-... +.++|...+..|...+..+ ...+ ..+++.|..+|.++++.+.+.++.+..++
T Consensus 63 ~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~--~el~---~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 63 NFLDEIIAFQADK-SIEVRKFVIGFIEEACKRD--IELL---LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHC--GGGH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4677777777777 8889999998888776532 2222 34788888889888888888877776665
No 266
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=23.28 E-value=59 Score=29.76 Aligned_cols=46 Identities=7% Similarity=0.155 Sum_probs=28.4
Q ss_pred CCcccccCcccCcCceEccCcccccHHhHHHHHhhCCCCCCCCCccccC
Q 046850 282 DEFRCPISLDLMRDPVIVASGHTYDRNSIAQWINSGHHTCPKSGQRLIH 330 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~~ 330 (686)
+-|+|..|...+.+.-...-|..||..|..+-| ...|..|++.+..
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCC
Confidence 447777777766543333556777877765543 3567777776643
No 267
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=23.18 E-value=62 Score=26.59 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=55.8
Q ss_pred hhchHHHHHHHHHhhHHHHHHHhhcCCCCChhHHHhhHH-HHHHHHHHHHHHHhccCCchhHHHhhhHHHHHHHHHHHHH
Q 046850 41 QMRNVSTMIRRIKLLYSLFDEIQETKCPLPPSSILCLTE-LFSVIRRVKLLIQGCKDGSSLWGLMQIELVSNQFYVLVKE 119 (686)
Q Consensus 41 ~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~-L~~~l~~ak~Ll~~c~~~Sklyll~~~~~i~~~f~~~~~~ 119 (686)
-+++=..+++++.-+.++|+.|...+ -+.... ..+.. -...-++|+.|+.... .+|+.....|.....+
T Consensus 15 L~~~R~~LV~~l~~V~~lLD~LL~~~-VL~~ee-~~I~~~~~T~~~kaR~Lld~v~--------~KG~~A~~~F~~~L~e 84 (98)
T 2nz7_A 15 LKSNRELLVTHIRNTQCLVDNLLKND-YFSAED-AEIVCACPTQPDKVRKILDLVQ--------SKGEEVSEFFLYLLQQ 84 (98)
T ss_dssp HHHTHHHHHHHCCCCHHHHHHHHHTT-SSCHHH-HHHHHTCCSHHHHHHHHHHHHH--------HHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHcC-CCCHHH-HHHHccCCCcHHHHHHHHHHHH--------HHhHHHHHHHHHHHHH
Confidence 35666678999989999999998766 344443 33332 3456789999997754 3467788888888888
Q ss_pred HHHHhhcC
Q 046850 120 MGRALDIL 127 (686)
Q Consensus 120 l~~~L~~l 127 (686)
.+++|-.+
T Consensus 85 ~~~~~~~~ 92 (98)
T 2nz7_A 85 LADAYVDL 92 (98)
T ss_dssp HHHSSGGG
T ss_pred hCccchhh
Confidence 88887655
No 268
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.13 E-value=1.6e+02 Score=20.09 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=23.8
Q ss_pred CCCcccccCcccCcCceEccCcccccHHhHHHHHh-h----CCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRDPVIVASGHTYDRNSIAQWIN-S----GHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dPv~~~cght~cr~ci~~w~~-~----~~~~CP~c~~~l~ 329 (686)
...|.|++|...|... ..+..... . ..+.|+.|++.+.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 4458999887776553 23334332 1 3468999988764
No 269
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.90 E-value=3e+02 Score=24.05 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=54.1
Q ss_pred hHHHHHHHhcCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 046850 605 VPLLIDLLRFGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPSLQSLTTDGSLKARRKADALLRLLNRC 677 (686)
Q Consensus 605 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~~~~~~k~~A~~lL~~l~~~ 677 (686)
+..+-+.+....+.-|-.++.++-.++.+.+......+. .++.+.+.......++..|.+...+++.=.+.
T Consensus 45 v~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~--~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 45 VDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFS--RNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHH--TTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 344555666678889999999999999988777655544 56788888888888999998887777775544
No 270
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.87 E-value=2.8e+02 Score=25.24 Aligned_cols=56 Identities=7% Similarity=0.119 Sum_probs=32.8
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHhhcccccccCCCCCChHHHHHHHhh
Q 046850 132 LNITADIREQVELLHRQAKRAELFVDAKELHRRDDLLEIMTSNNEKNIKNKGFIDMGRLKEILSS 196 (686)
Q Consensus 132 l~~s~ev~e~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (686)
++|++|=++++..++.+.+......-..-.....++..++. ..+||.+.++.++++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~---------a~~~DeakI~aL~~E 121 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT---------ASSPDTAKINAVAKE 121 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------SSSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Confidence 67999999999998887775433332222233445555553 234777877765543
No 271
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.05 E-value=71 Score=19.51 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 046850 202 PLDYEEEISKLEAEAQ 217 (686)
Q Consensus 202 ~~~~~~E~~~l~~~~~ 217 (686)
..+++.|+.+|++|+.
T Consensus 4 iaalkqeiaalkkeia 19 (33)
T 4dzn_A 4 IAALKQEIAALKKEIA 19 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777777777764
No 272
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.82 E-value=27 Score=28.04 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=12.2
Q ss_pred CCCCCCcccccCcc
Q 046850 278 PNIPDEFRCPISLD 291 (686)
Q Consensus 278 ~~~~~~~~Cpic~~ 291 (686)
.++|+++.||+|..
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 47899999999985
No 273
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.79 E-value=17 Score=29.13 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=19.1
Q ss_pred CCcc-cccCcccCc-C----ceEc-cCcccccHHhHHHH
Q 046850 282 DEFR-CPISLDLMR-D----PVIV-ASGHTYDRNSIAQW 313 (686)
Q Consensus 282 ~~~~-Cpic~~~m~-d----Pv~~-~cght~cr~ci~~w 313 (686)
..++ ||-|...+. + +|+- .||+.||..|-..|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3444 998877552 2 2333 37777777775555
No 274
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.63 E-value=1.1e+02 Score=23.05 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCCCcccccCccc-CcCceEccCcccccHH
Q 046850 279 NIPDEFRCPISLDL-MRDPVIVASGHTYDRN 308 (686)
Q Consensus 279 ~~~~~~~Cpic~~~-m~dPv~~~cght~cr~ 308 (686)
......+|..|..- ..-++.--||.+||..
T Consensus 11 ~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 11 PPQRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp CCSSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CCCcCCcChhhCCccCccCEEeecCCEeccc
Confidence 34456799999874 3346666899999975
No 275
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.95 E-value=46 Score=38.11 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=38.2
Q ss_pred CCCCCCCcccccCcccCcCce--------E--ccCcccc--------------------cHHhHHHHHhh-------CCC
Q 046850 277 LPNIPDEFRCPISLDLMRDPV--------I--VASGHTY--------------------DRNSIAQWINS-------GHH 319 (686)
Q Consensus 277 ~~~~~~~~~Cpic~~~m~dPv--------~--~~cght~--------------------cr~ci~~w~~~-------~~~ 319 (686)
..-+|+--+|+-|+.-|.||- + +.||-.| |..|-.+|-+- ...
T Consensus 105 ~~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~ 184 (761)
T 3vth_A 105 VPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPV 184 (761)
T ss_dssp CCCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTC
T ss_pred cccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCC
Confidence 446688899999998887753 2 3677554 89999887653 234
Q ss_pred CCCCCCccc
Q 046850 320 TCPKSGQRL 328 (686)
Q Consensus 320 ~CP~c~~~l 328 (686)
.||.|+-.+
T Consensus 185 aC~~CGP~l 193 (761)
T 3vth_A 185 ACFDCGPSL 193 (761)
T ss_dssp CCTTTSCCE
T ss_pred cCCccCCee
Confidence 699998775
No 276
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.91 E-value=53 Score=25.21 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=18.6
Q ss_pred CcccccCcccCcCc---e-EccCcccccHHhH
Q 046850 283 EFRCPISLDLMRDP---V-IVASGHTYDRNSI 310 (686)
Q Consensus 283 ~~~Cpic~~~m~dP---v-~~~cght~cr~ci 310 (686)
+-.|.+|...|.-- - --.||+.||..|-
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CCcccCCCCccCCccccccCCCCCEEEccccc
Confidence 34899998866421 1 1278888888873
No 277
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.75 E-value=32 Score=27.98 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=33.9
Q ss_pred CCCcccccCcccCcCc-eEccCcccccHHhHHHHHhhCCCCCCCCCcccc
Q 046850 281 PDEFRCPISLDLMRDP-VIVASGHTYDRNSIAQWINSGHHTCPKSGQRLI 329 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dP-v~~~cght~cr~ci~~w~~~~~~~CP~c~~~l~ 329 (686)
++=|.|..|...+.+. ....-|..||..|..+.+ ...|..|++.+.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccc
Confidence 3459999999888653 445678899999865432 467999988775
No 278
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.57 E-value=1.7e+02 Score=26.10 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=51.3
Q ss_pred hHHHHHHHh-cCChHHHHHHHHHHHHhhccChHHHHHHHHcCCCChHH-HHHHHhc-C--CHHHHHHHHHHHHHHHh
Q 046850 605 VPLLIDLLR-FGSAKGKENSITLLLGLCKDGGEEVARRLLINPRSIPS-LQSLTTD-G--SLKARRKADALLRLLNR 676 (686)
Q Consensus 605 i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~-L~~Ll~~-~--~~~~k~~A~~lL~~l~~ 676 (686)
+..|.+-|. ..++.++..|+.+|-.+..|.+......+.. ...+.- |+.++.. + ...+|+++..+++.-..
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 566777776 4788999999999999999887777666655 456766 7777742 2 34788887777665544
No 279
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=20.27 E-value=5.4e+02 Score=26.58 Aligned_cols=172 Identities=11% Similarity=0.054 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHhh-CchhHHHHHHhCCHHHHHHhhcCCCHHHHHHHHHHhhccccccccHHHHHhcCcHHHHHHHHc
Q 046850 409 EIQSQAAYELRLLAKT-GMDNRRIIAEAGAIPFLVTLLSSHDPRIQENAVTALLNLSIFDNNKILIMAAGAIDSIIEVLQ 487 (686)
Q Consensus 409 ~~q~~al~~L~~La~~-~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLs~~~~~k~~i~~~g~l~~Lv~lL~ 487 (686)
+.+...+..++.+..+ ++. .-..+++.++.+-...+.+++.-++..|...+... .+.+ ..+++.|..+|.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~--~~~l~~L~~LL~ 110 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELL--LKLIANLNMLLR 110 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGH--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHc
Confidence 5688888888887653 232 22468899999988889999999888887765421 1111 235667777787
Q ss_pred CCCCHHHHHHHHHHHHHhc---c-----Cchh----hhHhhcCCCcHHHHHHhcccCChHHHHHHHHHHHHhcC--CC--
Q 046850 488 SGKTMEARENAAATIFSLS---M-----IDDC----KVMIGGRPRAIPALVGLLREGTTAGKKDAATALFNLAV--YN-- 551 (686)
Q Consensus 488 ~~~~~e~~~~aa~~L~~Ls---~-----~~~~----~~~i~~~~g~i~~Lv~lL~~~~~~~~~~Al~aL~nLs~--~~-- 551 (686)
+. +..+.+.++.+..++- . .+.. ...-.....+-..++.++.+++..++..|++.+..+.. .+
T Consensus 111 d~-d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~ 189 (386)
T 3o2t_A 111 DE-NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRM 189 (386)
T ss_dssp CS-SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCC
Confidence 76 7777776666655542 1 1100 00000001123455566777888888888888776541 10
Q ss_pred -C-----------------------cHHHHHH--cCcHHHHHHHhcCC--CchhHHHHHHHHHHHhC
Q 046850 552 -A-----------------------NKASVVV--AGAVPLLIELLMDD--KAGITDDALAVLALLLG 590 (686)
Q Consensus 552 -~-----------------------~~~~iv~--~G~v~~Ll~lL~~~--~~~v~~~al~~L~nLa~ 590 (686)
+ +...+-. .|.+..|+..+..+ +......++..|..|+.
T Consensus 190 ~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak 256 (386)
T 3o2t_A 190 ADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIAR 256 (386)
T ss_dssp TTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 0 1123322 35677888888653 34455566777777775
No 280
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.13 E-value=70 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=25.3
Q ss_pred CCCcccccCcccCcCc-eEccCcccccHHhHHHHHhh
Q 046850 281 PDEFRCPISLDLMRDP-VIVASGHTYDRNSIAQWINS 316 (686)
Q Consensus 281 ~~~~~Cpic~~~m~dP-v~~~cght~cr~ci~~w~~~ 316 (686)
++=|+|..|...+.+- ....-|..||..|..+.+..
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 3458888888877653 33357788888888777653
No 281
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=20.11 E-value=70 Score=24.10 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=30.9
Q ss_pred CCcccccCcccCcCceEc--cCcccccHHhHHHHHhh---CCCCCCCCCcc
Q 046850 282 DEFRCPISLDLMRDPVIV--ASGHTYDRNSIAQWINS---GHHTCPKSGQR 327 (686)
Q Consensus 282 ~~~~Cpic~~~m~dPv~~--~cght~cr~ci~~w~~~---~~~~CP~c~~~ 327 (686)
..-.|.+|.+- .-++. .|...|-..|+...+.. +...||.|...
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34579999863 23443 68888999998766554 56789999643
Done!