BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046854
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 122 bits (307), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 4 GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVN 63
GG +E +ELLNP E +++I++ YVECT++ ++A+ F K P+HR E+
Sbjct: 498 GGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIR 557
Query: 64 NFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSN---CLPIRKATD 120
+ ++F Q+ DGSW G WGVCF Y TW+ + +TY + C + +A D
Sbjct: 558 ETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACD 617
Query: 121 FLLNIQCGDGGWGESYLSCPNK 142
FLL+ Q DGGWGE + SC +
Sbjct: 618 FLLSRQMADGGWGEDFESCEER 639
Score = 30.4 bits (67), Expect = 0.41, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSW 83
+CTA ALKA+ L Q+ P ++ + +AV + +++ PDG +
Sbjct: 455 DCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGF 500
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 33 EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFI 92
E +E A L F+ L H E +N + F LQ DG W G +G
Sbjct: 47 EQTGLEAYALGLDTKNYFKDLPKAHTAFE---GALNGMTFYVGLQAEDGHWTGDYGGPLF 103
Query: 93 YSTWWAISGLVAAEKTYSNCLPI-----RKATDFLLNIQCGDGGWG 133
I+ VA +P+ + +L ++Q DGGWG
Sbjct: 104 LLPGLLITCHVAR-------IPLPAGYREEIVRYLRSVQLPDGGWG 142
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 122 bits (307), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 4 GGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVN 63
GG +E +ELLNP E +++I++ YVECT++ ++A+ F K P+HR E+
Sbjct: 498 GGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIR 557
Query: 64 NFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSN---CLPIRKATD 120
+ ++F Q+ DGSW G WGVCF Y TW+ + +TY + C + +A D
Sbjct: 558 ETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACD 617
Query: 121 FLLNIQCGDGGWGESYLSCPNK 142
FLL+ Q DGGWGE + SC +
Sbjct: 618 FLLSRQMADGGWGEDFESCEER 639
Score = 30.4 bits (67), Expect = 0.41, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSW 83
+CTA ALKA+ L Q+ P ++ + +AV + +++ PDG +
Sbjct: 455 DCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGF 500
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 33 EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFI 92
E +E A L F+ L H E +N + F LQ DG W G +G
Sbjct: 47 EQTGLEAYALGLDTKNYFKDLPKAHTAFE---GALNGMTFYVGLQAEDGHWTGDYGGPLF 103
Query: 93 YSTWWAISGLVAAEKTYSNCLPI-----RKATDFLLNIQCGDGGWG 133
I+ VA +P+ + +L ++Q DGGWG
Sbjct: 104 LLPGLLITCHVAR-------IPLPAGYREEIVRYLRSVQLPDGGWG 142
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 9/73 (12%)
Query: 66 IINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVA----AEKTYSNCLPIRKATDF 121
I AV++++ QKPDGSW+GRWGV ++Y T +S L A + Y I+KA D+
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-----IQKALDW 522
Query: 122 LLNIQCGDGGWGE 134
+ Q DGGWGE
Sbjct: 523 VEQHQNPDGGWGE 535
Score = 40.8 bits (94), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 65 FIINAVKFIEDLQKPDGSW-----------YGRWGVCFIYSTWWAISGLVAAEKTYSNCL 113
+I A+ ++E Q PDG W Y G T WA+ L+A + S
Sbjct: 515 YIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEA- 573
Query: 114 PIRKATDFLLNIQCGDGGWGESYLS 138
R+ +L+ Q DGGW E Y +
Sbjct: 574 -ARRGVQYLVETQRPDGGWDEPYYT 597
Score = 25.8 bits (55), Expect = 8.4, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 117 KATDFLLNIQCGDGGWG 133
+A D+LL Q GDG WG
Sbjct: 243 RALDWLLERQAGDGSWG 259
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 9/73 (12%)
Query: 66 IINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVA----AEKTYSNCLPIRKATDF 121
I AV++++ QKPDGSW+GRWGV ++Y T +S L A + Y I+KA D+
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-----IQKALDW 522
Query: 122 LLNIQCGDGGWGE 134
+ Q DGGWGE
Sbjct: 523 VEQHQNPDGGWGE 535
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 65 FIINAVKFIEDLQKPDGSW-----------YGRWGVCFIYSTWWAISGLVAAEKTYSNCL 113
+I A+ ++E Q PDG W Y G T WA+ L+A + S
Sbjct: 515 YIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEA- 573
Query: 114 PIRKATDFLLNIQCGDGGWGESYLS 138
R+ +L+ Q DGGW E Y +
Sbjct: 574 -ARRGVQYLVETQRPDGGWDEPYYT 597
Score = 25.8 bits (55), Expect = 8.5, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 117 KATDFLLNIQCGDGGWG 133
+A D+LL Q GDG WG
Sbjct: 243 RALDWLLERQAGDGSWG 259
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 9/73 (12%)
Query: 66 IINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVA----AEKTYSNCLPIRKATDF 121
I AV++++ QKPDGSW+GRWGV ++Y T +S L A + Y I+KA D+
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-----IQKALDW 522
Query: 122 LLNIQCGDGGWGE 134
+ Q DGGWGE
Sbjct: 523 VEQHQNPDGGWGE 535
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 65 FIINAVKFIEDLQKPDGSW-----------YGRWGVCFIYSTWWAISGLVAAEKTYSNCL 113
+I A+ ++E Q PDG W Y G T WA+ L+A + S
Sbjct: 515 YIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEA- 573
Query: 114 PIRKATDFLLNIQCGDGGWGESYLS 138
R+ +L+ Q DGGW E Y +
Sbjct: 574 -ARRGVQYLVETQRPDGGWDEPYYT 597
Score = 25.8 bits (55), Expect = 8.5, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 117 KATDFLLNIQCGDGGWG 133
+A D+LL Q GDG WG
Sbjct: 243 RALDWLLERQAGDGSWG 259
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 32 IEHD-YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-WGV 89
I HD ++ T SA++ +TL+ +H V N + V +++ LQK DGS+ G WG
Sbjct: 88 IGHDPHLLYTLSAVQILTLYDSIH-------VIN-VDKVVAYVQSLQKEDGSFAGDIWGE 139
Query: 90 CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWG 133
++ A++ L K + + + KA +F+L+ DGG+G
Sbjct: 140 IDTRFSFCAVATLALLGKL--DAINVEKAIEFVLSCMNFDGGFG 181
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 32 IEHD-YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-WGV 89
I HD ++ T SA++ +TL+ +H V N + V +++ LQK DGS+ G WG
Sbjct: 89 IGHDPHLLYTLSAVQILTLYDSIH-------VIN-VDKVVAYVQSLQKEDGSFAGDIWGE 140
Query: 90 CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWG 133
++ A++ L K + + + KA +F+L+ DGG+G
Sbjct: 141 IDTRFSFCAVATLALLGKL--DAINVEKAIEFVLSCMNFDGGFG 182
>pdb|1CWV|A Chain A, Crystal Structure Of Invasin: A Bacterial Integrin-Binding
Protein
Length = 492
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 77 QKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDF-LLNIQCGDGGWGES 135
+ PDG+ +G WG YS+ W SG +KT +TDF +N+ G G +
Sbjct: 432 RAPDGTLWGEWGSLTAYSSDWQ-SGEYWVKKT---------STDFETMNMDTGALQPGPA 481
Query: 136 YLSCP 140
YL+ P
Sbjct: 482 YLAFP 486
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 18 IELLNPIEFLDEVII-EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKF---- 72
+E+ + L EVI E Y +AL ++ K+HP K V N ++NA ++
Sbjct: 7 MEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYGNGW 66
Query: 73 --IEDLQKPDGSWY 84
+ +P+ +W+
Sbjct: 67 IKVSSGTEPNRAWF 80
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 12 AGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKH 57
A P ++L P + D+ I CTA+AL A F+++H K
Sbjct: 55 AALPPKVDLTPPFQVYDQGRIG----SCTANALAAAIQFERIHDKQ 96
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGD--GGWGESYLSCPN 141
+WW L + + + + KA D+LLN GG+G S P+
Sbjct: 298 SWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPD 346
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 3 SGGITGWEPAGAPSWIELLNPIE 25
SGG+ G++ G P W +++ P++
Sbjct: 85 SGGMCGYDLDGCPVWYDIIGPLD 107
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 3 SGGITGWEPAGAPSWIELLNPIE 25
SGG+ G++ G P W +++ P++
Sbjct: 85 SGGMCGYDLDGCPVWYDIIGPLD 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,834,513
Number of Sequences: 62578
Number of extensions: 187015
Number of successful extensions: 525
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 26
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)