Query 046854
Match_columns 145
No_of_seqs 158 out of 1266
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 1.6E-37 3.4E-42 265.5 13.4 145 1-145 527-671 (759)
2 PLN02993 lupeol synthase 100.0 7.1E-37 1.5E-41 261.8 13.0 145 1-145 527-671 (763)
3 TIGR03463 osq_cycl 2,3-oxidosq 100.0 8.8E-32 1.9E-36 229.0 13.5 144 1-145 414-557 (634)
4 TIGR01787 squalene_cyclas squa 100.0 1.6E-29 3.4E-34 215.0 13.1 140 1-145 402-541 (621)
5 KOG0497 Oxidosqualene-lanoster 100.0 5.4E-30 1.2E-34 213.9 9.3 145 1-145 526-670 (760)
6 TIGR01507 hopene_cyclase squal 100.0 8.4E-29 1.8E-33 210.8 12.8 132 1-144 417-550 (635)
7 cd02892 SQCY_1 Squalene cyclas 99.9 6.8E-27 1.5E-31 199.5 13.5 143 1-144 414-556 (634)
8 cd02889 SQCY Squalene cyclase 99.8 7.5E-20 1.6E-24 145.4 13.3 136 1-140 131-266 (348)
9 PF13249 Prenyltrans_2: Prenyl 99.8 1.4E-20 3.1E-25 127.3 7.2 91 33-134 19-113 (113)
10 PLN03012 Camelliol C synthase 99.8 3.6E-18 7.9E-23 147.0 11.7 92 38-135 619-723 (759)
11 COG1657 SqhC Squalene cyclase 99.8 6.9E-19 1.5E-23 145.4 4.9 139 1-145 295-433 (517)
12 PLN02993 lupeol synthase 99.7 6.9E-17 1.5E-21 139.3 11.6 113 16-135 597-723 (763)
13 TIGR03463 osq_cycl 2,3-oxidosq 99.7 7.2E-17 1.6E-21 138.0 11.2 92 36-136 504-606 (634)
14 TIGR01507 hopene_cyclase squal 99.7 1.2E-16 2.5E-21 136.7 11.0 93 35-136 497-600 (635)
15 PLN03201 RAB geranylgeranyl tr 99.7 9E-16 2E-20 121.7 12.6 110 22-141 70-180 (316)
16 cd02890 PTase Protein prenyltr 99.7 7.3E-16 1.6E-20 120.1 11.6 115 22-144 62-177 (286)
17 cd02894 GGTase-II Geranylgeran 99.7 7.5E-16 1.6E-20 120.5 11.4 113 23-143 65-178 (287)
18 KOG0366 Protein geranylgeranyl 99.7 5.8E-16 1.3E-20 117.9 8.9 106 23-138 81-187 (329)
19 cd02893 FTase Protein farnesyl 99.6 1.3E-14 2.7E-19 114.4 11.7 110 22-138 61-171 (299)
20 cd02895 GGTase-I Geranylgerany 99.6 1.2E-14 2.6E-19 114.8 10.8 101 31-138 86-190 (307)
21 PLN02710 farnesyltranstransfer 99.6 8.8E-15 1.9E-19 119.8 9.4 112 22-140 106-218 (439)
22 PF13243 Prenyltrans_1: Prenyl 99.5 9E-16 1.9E-20 103.3 0.9 69 66-136 1-69 (109)
23 cd02894 GGTase-II Geranylgeran 99.5 6.9E-14 1.5E-18 109.5 10.8 113 22-144 114-227 (287)
24 TIGR01787 squalene_cyclas squa 99.5 7E-14 1.5E-18 119.5 11.7 95 35-137 486-591 (621)
25 COG5029 CAL1 Prenyltransferase 99.5 5.6E-14 1.2E-18 109.4 10.0 112 20-138 87-199 (342)
26 cd00688 ISOPREN_C2_like This g 99.5 8.8E-14 1.9E-18 106.0 11.1 94 33-136 136-229 (300)
27 cd02892 SQCY_1 Squalene cyclas 99.5 1.5E-13 3.4E-18 117.7 12.1 103 31-134 368-497 (634)
28 cd02890 PTase Protein prenyltr 99.5 1.5E-13 3.3E-18 107.1 11.1 113 22-144 112-226 (286)
29 PF13249 Prenyltrans_2: Prenyl 99.5 5E-14 1.1E-18 95.0 5.9 67 70-140 1-69 (113)
30 cd00688 ISOPREN_C2_like This g 99.5 3.9E-13 8.4E-18 102.5 10.6 93 34-132 79-179 (300)
31 cd02895 GGTase-I Geranylgerany 99.5 4.5E-13 9.7E-18 105.9 10.8 117 22-144 126-247 (307)
32 PLN03201 RAB geranylgeranyl tr 99.5 6.4E-13 1.4E-17 105.4 10.9 113 22-144 118-231 (316)
33 PF13243 Prenyltrans_1: Prenyl 99.5 6E-14 1.3E-18 94.4 3.9 83 36-127 25-107 (109)
34 KOG0365 Beta subunit of farnes 99.5 5.4E-13 1.2E-17 105.1 9.7 116 16-138 127-244 (423)
35 cd02889 SQCY Squalene cyclase 99.4 6.6E-13 1.4E-17 105.6 10.3 100 34-134 88-212 (348)
36 PLN02710 farnesyltranstransfer 99.4 5.9E-12 1.3E-16 103.4 10.1 113 22-144 157-270 (439)
37 cd02897 A2M_2 Proteins similar 99.3 1.1E-11 2.5E-16 96.9 11.1 88 34-127 77-174 (292)
38 cd02893 FTase Protein farnesyl 99.3 1.1E-11 2.5E-16 97.6 10.6 113 22-144 112-226 (299)
39 cd02896 complement_C3_C4_C5 Pr 99.2 1.5E-10 3.2E-15 91.1 10.4 98 34-136 78-228 (297)
40 TIGR02474 pec_lyase pectate ly 99.2 2.1E-10 4.6E-15 89.5 9.3 116 1-129 81-222 (290)
41 KOG0367 Protein geranylgeranyl 99.1 2.5E-10 5.5E-15 88.6 9.0 99 31-138 99-199 (347)
42 COG5029 CAL1 Prenyltransferase 99.1 5.8E-10 1.3E-14 87.2 10.6 118 16-142 133-252 (342)
43 cd02897 A2M_2 Proteins similar 99.1 3.6E-10 7.8E-15 88.5 9.2 71 64-135 49-124 (292)
44 cd02896 complement_C3_C4_C5 Pr 99.1 7.6E-10 1.7E-14 87.0 10.0 79 61-140 49-130 (297)
45 cd02891 A2M_like Proteins simi 99.0 2.8E-09 6.1E-14 82.3 11.0 87 34-127 76-172 (282)
46 TIGR02474 pec_lyase pectate ly 99.0 2.1E-09 4.6E-14 83.9 9.5 94 36-132 42-156 (290)
47 cd02891 A2M_like Proteins simi 99.0 1.6E-09 3.5E-14 83.7 8.7 79 60-139 45-127 (282)
48 PF07678 A2M_comp: A-macroglob 98.9 4.6E-09 1E-13 80.6 8.6 100 1-125 11-125 (246)
49 KOG0365 Beta subunit of farnes 98.9 8E-09 1.7E-13 81.8 8.4 100 31-137 94-195 (423)
50 KOG0366 Protein geranylgeranyl 98.9 1.3E-08 2.8E-13 78.1 8.9 111 22-142 128-239 (329)
51 PF00432 Prenyltrans: Prenyltr 98.9 6.1E-09 1.3E-13 59.4 5.4 41 66-106 3-44 (44)
52 KOG0497 Oxidosqualene-lanoster 98.8 8.2E-09 1.8E-13 87.8 7.3 92 38-135 618-722 (760)
53 PF01122 Cobalamin_bind: Eukar 98.7 8.3E-08 1.8E-12 76.2 8.7 95 33-134 182-279 (326)
54 PF09492 Pec_lyase: Pectic aci 98.5 3.7E-07 7.9E-12 71.5 8.0 98 37-137 38-160 (289)
55 KOG0367 Protein geranylgeranyl 98.4 1.6E-06 3.6E-11 67.7 9.0 114 24-141 190-305 (347)
56 PF07678 A2M_comp: A-macroglob 98.3 1.6E-06 3.6E-11 66.5 7.0 69 69-138 2-74 (246)
57 PF00432 Prenyltrans: Prenyltr 98.2 6.9E-07 1.5E-11 50.8 1.7 30 114-143 2-31 (44)
58 COG1689 Uncharacterized protei 97.9 3.2E-05 7E-10 58.2 6.0 63 33-105 207-271 (274)
59 COG1657 SqhC Squalene cyclase 97.7 2.4E-05 5.3E-10 65.6 3.3 92 36-135 379-481 (517)
60 COG1689 Uncharacterized protei 97.6 0.00019 4.2E-09 54.1 6.1 88 31-136 162-251 (274)
61 PF09492 Pec_lyase: Pectic aci 97.3 0.00027 5.8E-09 55.6 4.2 119 2-133 77-221 (289)
62 PLN02592 ent-copalyl diphospha 97.1 0.0015 3.2E-08 57.9 7.0 58 65-125 116-176 (800)
63 KOG1366 Alpha-macroglobulin [P 96.3 0.021 4.6E-07 53.6 8.4 98 37-136 945-1047(1436)
64 PLN02279 ent-kaur-16-ene synth 96.2 0.008 1.7E-07 53.3 5.2 58 64-124 73-135 (784)
65 PF07470 Glyco_hydro_88: Glyco 95.9 0.05 1.1E-06 43.3 8.0 94 38-131 187-294 (336)
66 PLN02592 ent-copalyl diphospha 95.8 0.015 3.1E-07 51.8 4.8 43 90-135 95-137 (800)
67 PF01122 Cobalamin_bind: Eukar 95.0 0.22 4.8E-06 40.0 8.6 84 40-137 148-239 (326)
68 TIGR01577 oligosac_amyl oligos 94.4 0.15 3.2E-06 44.2 6.8 66 64-133 256-334 (616)
69 PLN02279 ent-kaur-16-ene synth 94.1 0.037 8.1E-07 49.2 2.5 43 90-135 53-95 (784)
70 TIGR01535 glucan_glucosid gluc 92.9 0.44 9.4E-06 41.8 7.1 69 62-134 249-335 (648)
71 TIGR01535 glucan_glucosid gluc 92.1 0.69 1.5E-05 40.5 7.3 78 38-126 298-386 (648)
72 COG4225 Predicted unsaturated 92.0 1.3 2.8E-05 35.8 8.2 90 41-130 207-308 (357)
73 COG2373 Large extracellular al 91.7 1.3 2.7E-05 42.8 9.0 93 32-125 1165-1264(1621)
74 cd00249 AGE AGE domain; N-acyl 91.4 1.8 3.9E-05 34.7 8.7 96 35-133 50-159 (384)
75 KOG1366 Alpha-macroglobulin [P 90.5 0.41 8.9E-06 45.4 4.7 45 35-84 1000-1044(1436)
76 TIGR01577 oligosac_amyl oligos 90.5 0.86 1.9E-05 39.5 6.4 79 38-126 298-393 (616)
77 PF07221 GlcNAc_2-epim: N-acyl 89.8 4.1 8.8E-05 32.4 9.4 98 36-137 19-129 (346)
78 PF07944 DUF1680: Putative gly 89.3 1.7 3.6E-05 37.0 7.1 80 39-122 61-157 (520)
79 PF07470 Glyco_hydro_88: Glyco 87.9 2.3 5E-05 33.8 6.7 102 37-140 123-242 (336)
80 COG3538 Uncharacterized conser 77.8 9.8 0.00021 31.2 6.4 81 61-143 261-353 (434)
81 COG2942 N-acyl-D-glucosamine 2 77.2 20 0.00043 29.6 8.1 88 35-125 52-150 (388)
82 cd04794 euk_LANCL eukaryotic L 72.2 47 0.001 26.3 10.5 26 110-135 185-210 (343)
83 COG3533 Uncharacterized protei 64.9 47 0.001 28.7 7.8 90 31-127 62-168 (589)
84 PF10022 DUF2264: Uncharacteri 64.5 77 0.0017 25.9 8.9 65 65-135 133-197 (361)
85 COG1331 Highly conserved prote 62.9 1.1E+02 0.0023 27.3 9.9 93 40-139 413-518 (667)
86 cd04794 euk_LANCL eukaryotic L 60.1 76 0.0016 25.2 8.1 26 60-85 184-209 (343)
87 PF05592 Bac_rhamnosid: Bacter 57.0 32 0.0007 28.9 5.7 66 63-128 168-246 (509)
88 cd00194 UBA Ubiquitin Associat 55.6 20 0.00044 18.7 2.9 24 95-124 15-38 (38)
89 PF07944 DUF1680: Putative gly 53.5 23 0.00049 30.2 4.3 28 110-137 80-107 (520)
90 PF03991 Prion_octapep: Copper 53.5 6.6 0.00014 14.0 0.5 6 129-134 3-8 (8)
91 KOG3760 Heparan sulfate-glucur 51.1 17 0.00037 30.4 3.0 67 65-131 381-462 (594)
92 PF00627 UBA: UBA/TS-N domain; 50.9 34 0.00073 17.9 3.3 20 97-122 18-37 (37)
93 PF05382 Amidase_5: Bacterioph 49.3 36 0.00078 24.2 4.1 42 66-108 2-45 (145)
94 PF00759 Glyco_hydro_9: Glycos 46.7 38 0.00082 27.9 4.5 23 61-83 95-117 (444)
95 smart00165 UBA Ubiquitin assoc 46.1 28 0.00061 18.0 2.5 20 97-122 17-36 (37)
96 COG1331 Highly conserved prote 45.8 1.3E+02 0.0029 26.7 7.8 22 64-85 183-205 (667)
97 PF15144 DUF4576: Domain of un 41.3 41 0.00089 21.4 3.0 26 112-137 55-80 (88)
98 PLN02909 Endoglucanase 39.0 41 0.00089 28.7 3.6 23 111-133 122-144 (486)
99 PF00759 Glyco_hydro_9: Glycos 37.0 33 0.00072 28.2 2.8 21 112-132 97-117 (444)
100 COG3387 SGA1 Glucoamylase and 36.8 67 0.0014 28.2 4.7 65 64-132 244-323 (612)
101 PF11349 DUF3151: Protein of u 34.5 68 0.0015 22.3 3.5 44 82-125 74-121 (129)
102 cd00249 AGE AGE domain; N-acyl 34.1 2.4E+02 0.0051 22.4 10.9 96 35-133 112-218 (384)
103 TIGR03046 PS_II_psbV2 photosys 31.4 1.4E+02 0.003 21.5 4.8 58 64-135 96-153 (155)
104 PLN02345 endoglucanase 29.8 65 0.0014 27.4 3.4 22 112-133 85-106 (469)
105 COG3387 SGA1 Glucoamylase and 29.2 1.9E+02 0.004 25.5 6.1 45 92-140 537-581 (612)
106 PF10022 DUF2264: Uncharacteri 29.1 3.2E+02 0.007 22.3 9.0 64 61-125 228-303 (361)
107 PLN02266 endoglucanase 28.6 82 0.0018 27.1 3.8 22 112-133 133-154 (510)
108 PF07499 RuvA_C: RuvA, C-termi 28.2 1.1E+02 0.0025 16.9 3.8 26 96-124 4-29 (47)
109 PF09282 Mago-bind: Mago bindi 28.0 8.9 0.00019 19.3 -1.2 13 121-133 4-16 (27)
110 PF11329 DUF3131: Protein of u 26.1 2.2E+02 0.0049 23.4 5.7 28 60-87 55-82 (367)
111 cd04791 LanC_SerThrkinase Lant 26.0 3.1E+02 0.0066 21.1 8.4 72 61-133 102-183 (321)
112 KOG3760 Heparan sulfate-glucur 25.7 43 0.00092 28.1 1.5 22 113-134 380-401 (594)
113 COG4225 Predicted unsaturated 25.4 1.5E+02 0.0033 24.2 4.6 48 35-82 262-309 (357)
114 PF05426 Alginate_lyase: Algin 24.1 3.2E+02 0.0069 20.6 7.3 53 75-127 202-267 (272)
115 COG3538 Uncharacterized conser 24.0 2.1E+02 0.0045 23.8 5.1 58 63-125 319-384 (434)
116 PRK03430 hypothetical protein; 20.9 1.1E+02 0.0024 22.0 2.8 25 99-126 27-51 (157)
117 PLN02171 endoglucanase 20.8 1.4E+02 0.003 26.5 3.8 20 112-131 119-138 (629)
118 PRK13621 psbV cytochrome c-550 20.2 3.1E+02 0.0066 20.1 4.9 59 64-136 107-165 (170)
119 PF00782 DSPc: Dual specificit 20.0 2E+02 0.0044 18.9 3.9 57 62-126 55-114 (133)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.6e-37 Score=265.54 Aligned_cols=145 Identities=57% Similarity=1.196 Sum_probs=138.4
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
|+||||++|+.+++..||+.|||.|.|+++++|++++++|+.+|.+|..+++..|.++.++++++|+||++||++.|++|
T Consensus 527 n~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~D 606 (759)
T PLN03012 527 SKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLD 606 (759)
T ss_pred CCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999988777777778899999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVKL 145 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~~ 145 (145)
|||.++|+.+++|+|++||.+|.++|..+...+.|+||++||+++|++|||||++..||+++.|+
T Consensus 607 GsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~ 671 (759)
T PLN03012 607 GSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYI 671 (759)
T ss_pred CCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCcccc
Confidence 99999999999999999999999999876566999999999999999999999999999999986
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=7.1e-37 Score=261.85 Aligned_cols=145 Identities=55% Similarity=1.156 Sum_probs=137.4
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
|+||||++|+.+++..||+.|||++.|+++++|++++++|++||++|+.+++..|.++.++|+++|+||++||++.|++|
T Consensus 527 n~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~D 606 (763)
T PLN02993 527 SENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPD 606 (763)
T ss_pred cCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999876677777788999999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVKL 145 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~~ 145 (145)
|||.++||.+++|+|++||.+|.++|..+...+.|+||++||+++|++|||||+++.||+++.|+
T Consensus 607 GSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~ 671 (763)
T PLN02993 607 GSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYI 671 (763)
T ss_pred CCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccc
Confidence 99999999999999999999999999885556899999999999999999999999999999986
No 3
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.97 E-value=8.8e-32 Score=229.02 Aligned_cols=144 Identities=36% Similarity=0.723 Sum_probs=132.9
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
|+||||++|+..++..||+.||+.+.|++.++|++++++|++||.+|..+.+..+..+..+|+++++|+++||++.|++|
T Consensus 414 n~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~d 493 (634)
T TIGR03463 414 NEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQRED 493 (634)
T ss_pred CCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999876554555678889999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVKL 145 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~~ 145 (145)
|+|.+.||.+++|.|++|+.+|..+|.. ...+.++||++||+++|++||||++...+|.++.|+
T Consensus 494 GsW~g~Wg~~~~Y~T~~al~aL~~~G~~-~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~ 557 (634)
T TIGR03463 494 GSFPGSWGVCFTYGTFHGVMGLRAAGAS-PDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYV 557 (634)
T ss_pred CCccccCCCCCcHHHHHHHHHHHHcCCC-cCcHHHHHHHHHHHHccCCCCCccCccCcccccccc
Confidence 9999999999999999999999999987 357899999999999999999999999999888774
No 4
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.96 E-value=1.6e-29 Score=214.96 Aligned_cols=140 Identities=39% Similarity=0.825 Sum_probs=127.4
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
|+||||++|+.+++..+|+.|||.|.|++.++|+|++++|+++|++|..++. +.++++++|+|+++||++.|++|
T Consensus 402 n~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~-----r~~~~~~~i~rAl~~L~~~Q~~D 476 (621)
T TIGR01787 402 SSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGH-----RADEIRNVLERALEYLRREQRAD 476 (621)
T ss_pred CCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcC-----ccHhHHHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999999999999999999988752 12346789999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVKL 145 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~~ 145 (145)
|+|.++|+.+++|+|++++.+|..+|......+.++||++||+++|++|||||+.+.+++++.|+
T Consensus 477 Gsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~ 541 (621)
T TIGR01787 477 GSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYV 541 (621)
T ss_pred CCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccC
Confidence 99999999999999999999999998764345899999999999999999999999999998884
No 5
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.96 E-value=5.4e-30 Score=213.93 Aligned_cols=145 Identities=59% Similarity=1.120 Sum_probs=141.3
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
+.+||+++++..+...+|+.|||.|.|++++++++++.+|..++.+|..+.+..|++|..+|...|++|++||.+.|.+|
T Consensus 526 ~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~D 605 (760)
T KOG0497|consen 526 SENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPD 605 (760)
T ss_pred hccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVKL 145 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~~ 145 (145)
|+|++.||+|.+|+|.+|+.+|.++|..+.+...++||++||++.|++|||||+++.||++++|+
T Consensus 606 GSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi 670 (760)
T KOG0497|consen 606 GSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYI 670 (760)
T ss_pred CcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCcccccc
Confidence 99999999999999999999999999988789999999999999999999999999999999996
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.96 E-value=8.4e-29 Score=210.76 Aligned_cols=132 Identities=29% Similarity=0.488 Sum_probs=120.3
Q ss_pred CCCCCccccccccccchhhhcCccccccC--ccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQK 78 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~--~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~ 78 (145)
|+||||++|+.+++..++++|| |++ .++|+|++++|+++|++|..++... .+++|+|+++||++.|+
T Consensus 417 n~dGgw~af~~~~~~~~l~~~~----f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~-------~~~~i~rav~~L~~~Q~ 485 (635)
T TIGR01507 417 SSNGGWGAFDVDNTSDLLNHIP----FCDFGAVTDPPTADVTARVLECLGSFGYDD-------AWPVIERAVEYLKREQE 485 (635)
T ss_pred CCCCCEecccCCcchhHHhcCC----ccccccccCCCCccHHHHHHHHHHHhCCCc-------hhHHHHHHHHHHHHccC
Confidence 7899999999999999999998 655 7889999999999999999886321 15789999999999999
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 79 PDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 79 ~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
+||+|.++|+.+++|+|+.||.+|...|.. ...+.++||++||+++|++||||++.+.||+++.|
T Consensus 486 ~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~-~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~ 550 (635)
T TIGR01507 486 PDGSWFGRWGVNYLYGTGAVLSALKAVGID-TREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAY 550 (635)
T ss_pred CCCCCccCCCCccccHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHhcCCCCCCCCCCcccccccc
Confidence 999998899999999999999999999987 46789999999999999999999999999998877
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.94 E-value=6.8e-27 Score=199.52 Aligned_cols=143 Identities=52% Similarity=0.971 Sum_probs=127.2
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
|+||||++|+..++..|+..++|.+.|++.++|++++++|+++|.+|..++...+.++. +|+++++|+++||++.|++|
T Consensus 414 n~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~-~i~~~i~rAv~~L~~~Q~~D 492 (634)
T cd02892 414 NSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRR-EIDPAIRRAVKYLLREQEPD 492 (634)
T ss_pred CCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHH-HHHHHHHHHHHHHHHccCCC
Confidence 68999999999888777777778888888899999999999999999999866544333 67889999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
|+|.++|+.+++|.|++|+.+|..+|......+.++++++||+++|++||||++.+.+++++.|
T Consensus 493 GsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~ 556 (634)
T cd02892 493 GSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSY 556 (634)
T ss_pred CCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCccc
Confidence 9999999999999999999999999876335689999999999999999999999999888766
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.83 E-value=7.5e-20 Score=145.40 Aligned_cols=136 Identities=51% Similarity=0.951 Sum_probs=110.2
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
++||||+.|...++..|++. ++ +.+++...+++++.+|+++|.+|..++...+..+ .++.+.++|+++||++.|++|
T Consensus 131 ~~dG~f~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~-~~~~~~i~~a~~~L~~~q~~d 207 (348)
T cd02889 131 NSNGGFAAFEPDNTYKYLEL-IP-EVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHR-REIDPAIRRAVKYLEREQEPD 207 (348)
T ss_pred cCCCCEeeecCCccHHHHhc-Cc-hhhcCCccCCCCcchHHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHhCCCC
Confidence 57999999987766666554 22 2245556788999999999999999886543222 246678999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCC
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCP 140 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~ 140 (145)
|+|.+.|+.++++.|++++.+|..+|.. ...+.++++++||+++|++||||+..+..+.
T Consensus 208 G~w~~~~~~~~~y~ta~a~~aL~~~g~~-~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~ 266 (348)
T cd02889 208 GSWYGRWGVCFIYGTWFALEALAAAGED-ENSPYVRKACDWLLSKQNPDGGWGESYESYE 266 (348)
T ss_pred CCccccCCCcchHHHHHHHHHHHHcCCC-cCcHHHHHHHHHHHHccCCCCCcCCcccccc
Confidence 9998888878889999999999999876 4578899999999999999999997655443
No 9
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.83 E-value=1.4e-20 Score=127.25 Aligned_cols=91 Identities=33% Similarity=0.417 Sum_probs=71.2
Q ss_pred cCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHH--HHHHHHhCCCCCCccccC--CcchhhHHHHHHHHHHHcCCC
Q 046854 33 EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINA--VKFIEDLQKPDGSWYGRW--GVCFIYSTWWAISGLVAAEKT 108 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka--~~~L~~~Q~~dG~w~~~~--g~~~~~~T~~al~aL~~~g~~ 108 (145)
..+++..|++||.+|..++...+ .+++ ++||+++|++||+|.... ...+++.|+.++.+|..++..
T Consensus 19 ~~~~~~~T~~al~aL~~~g~~~~----------~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~ 88 (113)
T PF13249_consen 19 GPSDVWDTAFALLALAALGEEPD----------RDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRP 88 (113)
T ss_dssp S-BEHHHHHHHHHHHHHHTSHHC----------HHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-G
T ss_pred CCCCHHHHHHHHHHHHHhCCccc----------HHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCC
Confidence 35778899999999999975421 3444 999999999999998754 236788999999999999887
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCcCC
Q 046854 109 YSNCLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 109 ~~~~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
. ..+.++|+++||+++|++||||++
T Consensus 89 ~-~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 89 D-DEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp G-CHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred c-ccHHHHHHHHHHHHhcCCCCCCCc
Confidence 3 357899999999999999999984
No 10
>PLN03012 Camelliol C synthase
Probab=99.77 E-value=3.6e-18 Score=146.97 Aligned_cols=92 Identities=24% Similarity=0.368 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc-------------chhhHHHHHHHHHHH
Q 046854 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV-------------CFIYSTWWAISGLVA 104 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~-------------~~~~~T~~al~aL~~ 104 (145)
.+|++||.+|+.++...+. .++|+||++||++.|++||||+..|.. +.++.|++||++|.+
T Consensus 619 YgT~~aL~aL~a~g~~~~~------~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ 692 (759)
T PLN03012 619 YGTWFALAGLAAAGKTFND------CEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIH 692 (759)
T ss_pred cHHHHHHHHHHHhCccCCC------cHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHH
Confidence 3899999999999865432 368999999999999999999876632 456899999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 105 AEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 105 ~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+|..+.+...++||++||+++|.+||+|-+.
T Consensus 693 ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~ 723 (759)
T PLN03012 693 AGQAERDPIPLHRAAKLIINSQLENGDFPQQ 723 (759)
T ss_pred cCCCCCCcHHHHHHHHHHHHcccCCCCCCCc
Confidence 9987555678999999999999999999754
No 11
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.75 E-value=6.9e-19 Score=145.41 Aligned_cols=139 Identities=33% Similarity=0.619 Sum_probs=123.9
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
|..|||..|+..+...+++.+|+.+.+ .+.+++.+++|...+.+|+.+....++++ ..-+++++.||++.|.++
T Consensus 295 ~~~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s~adct~~~~~~l~a~~~yl~~~~----~~~i~~a~e~LL~~Q~~~ 368 (517)
T COG1657 295 NKLGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPSTADCTHRVVLALAALNAYLEAYD----GQPIERALEWLLSDQEPD 368 (517)
T ss_pred cccCceeeeccccccHHHhhCCHhhcc--ccccCCcccCCCccHHHHhhhhhcccccc----CCcccHHHhhhhhhcccc
Confidence 446999999999999999999988865 88999999999999999999876543221 123799999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCccC
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVKL 145 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~~ 145 (145)
|+|.+.|+++.+|.|+.++.+|..+|....+...+++++.|+..+|.+||||++...++++++|.
T Consensus 369 GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~ 433 (517)
T COG1657 369 GSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYT 433 (517)
T ss_pred CceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccc
Confidence 99999999999999999999999999885567889999999999999999999999999999984
No 12
>PLN02993 lupeol synthase
Probab=99.71 E-value=6.9e-17 Score=139.32 Aligned_cols=113 Identities=20% Similarity=0.296 Sum_probs=86.5
Q ss_pred chhhhcC-ccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC------
Q 046854 16 SWIELLN-PIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG------ 88 (145)
Q Consensus 16 ~~l~~~~-~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g------ 88 (145)
.||...+ +++++.+ .+....+..|+.||.+|..++...+. .++|+||++||+++|++||+|+..+.
T Consensus 597 ~yL~~~Q~~DGSW~G-~Wgv~y~YgT~~aL~aL~a~G~~~~~------~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~ 669 (763)
T PLN02993 597 QFIESKQTPDGSWYG-NWGICFIYATWFALGGLAAAGKTYND------CLAMRKGVHFLLTIQRDDGGWGESYLSCPEQR 669 (763)
T ss_pred HHHHHhcCCCCCccc-ccccccCcHHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcc
Confidence 3444333 4555533 23344556999999999988764321 36899999999999999999976442
Q ss_pred -------cchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 89 -------VCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 89 -------~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
.+.++.|++||++|.++|..+++.+.++||++||++.|.+||+|-+.
T Consensus 670 y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~ 723 (763)
T PLN02993 670 YIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQ 723 (763)
T ss_pred cccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCc
Confidence 24568999999999999986555678999999999999999999753
No 13
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.71 E-value=7.2e-17 Score=137.96 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC-----------cchhhHHHHHHHHHHH
Q 046854 36 YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG-----------VCFIYSTWWAISGLVA 104 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g-----------~~~~~~T~~al~aL~~ 104 (145)
....|++||.+|..++.... +++++|+++||+++|++||+|...|+ .+.++.|++||++|..
T Consensus 504 ~~Y~T~~al~aL~~~G~~~~-------~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~ 576 (634)
T TIGR03463 504 FTYGTFHGVMGLRAAGASPD-------DMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAE 576 (634)
T ss_pred CcHHHHHHHHHHHHcCCCcC-------cHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHH
Confidence 34479999999998764321 46899999999999999999976543 2567899999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 105 AEKTYSNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 105 ~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
+|.. ..+.++|+++||+++|++||||.+..
T Consensus 577 ~g~~--~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 577 AGEG--GHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred cCCc--CCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 9865 47889999999999999999998654
No 14
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.70 E-value=1.2e-16 Score=136.69 Aligned_cols=93 Identities=30% Similarity=0.549 Sum_probs=77.0
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc-----------CCcchhhHHHHHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-----------WGVCFIYSTWWAISGLV 103 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~-----------~g~~~~~~T~~al~aL~ 103 (145)
.+...|++||.+|+..+... .+++|+|+++||+++|++||||... .|.+++..|++||.||.
T Consensus 497 ~~~Y~T~~al~aL~~~g~~~-------~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~ 569 (635)
T TIGR01507 497 NYLYGTGAVLSALKAVGIDT-------REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALI 569 (635)
T ss_pred ccccHHHHHHHHHHHcCCCc-------ccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHH
Confidence 44568999999998765421 1468999999999999999999631 13567789999999999
Q ss_pred HcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 104 AAEKTYSNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 104 ~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
.++.. ..+.++||++||+++|++||||++..
T Consensus 570 ~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~ 600 (635)
T TIGR01507 570 AAGRA--ESEAARRGVQYLVETQRPDGGWDEPY 600 (635)
T ss_pred HhCCC--CcHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 99865 46889999999999999999999763
No 15
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.67 E-value=9e-16 Score=121.68 Aligned_cols=110 Identities=21% Similarity=0.333 Sum_probs=90.6
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~al~ 100 (145)
++.+.|+..+...+|+..|+.|+.+|.++.+. ..+++ +++++||+++|++||+|.+ .+++.|++.|++|+.
T Consensus 70 ~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~------~~id~--~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a 141 (316)
T PLN03201 70 HESGGFGGNTGHDPHILYTLSAVQILALFDRL------DLLDA--DKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALC 141 (316)
T ss_pred CCCCCcCCCCCCcccHHHHHHHHHHHHHhhhh------hhhhH--HHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHH
Confidence 45666766666678999999999999998542 13454 7899999999999999987 678899999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCC
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPN 141 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~ 141 (145)
+|..++.. ....++++++||++||++||||+..+..-..
T Consensus 142 ~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~p~~esh 180 (316)
T PLN03201 142 CLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCTPGGESH 180 (316)
T ss_pred HHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCCCCCCCc
Confidence 99999865 3467899999999999999999987654333
No 16
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.67 E-value=7.3e-16 Score=120.11 Aligned_cols=115 Identities=21% Similarity=0.174 Sum_probs=92.0
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc-CCcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-WGVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~-~g~~~~~~T~~al~ 100 (145)
++.+.|.....+.+++..|+.|+.+|.+++.. .. +.++ ++++++||+++|++||+|... +++.+++.|++||.
T Consensus 62 ~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~--~~~~--~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~ 135 (286)
T cd02890 62 NEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--AL--SRID--REKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALS 135 (286)
T ss_pred CCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--cc--chhh--HHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHH
Confidence 45556666566789999999999999999852 00 1122 478999999999999999764 56789999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
+|..+|... ...++++++||+++|++||||+..+..-.+..|
T Consensus 136 ~l~ll~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~ 177 (286)
T cd02890 136 ILSLLNILT--DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGY 177 (286)
T ss_pred HHHHhCCch--hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccH
Confidence 999999872 578999999999999999999987654444433
No 17
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.67 E-value=7.5e-16 Score=120.52 Aligned_cols=113 Identities=25% Similarity=0.311 Sum_probs=91.4
Q ss_pred ccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHHHHH
Q 046854 23 PIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWAISG 101 (145)
Q Consensus 23 ~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~al~a 101 (145)
+.+.|.......+++..|+.|+.+|.+++... .+++.++++++||+++|++||+|.+ .+++.+++.|++|+.+
T Consensus 65 ~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~------~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~ 138 (287)
T cd02894 65 EDGGFGGSPGHDPHILSTLSAIQILALYDLLN------KIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLC 138 (287)
T ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHHhhhhh------hccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHH
Confidence 35556665556688999999999999985421 3454579999999999999999987 4788899999999999
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCc
Q 046854 102 LVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKV 143 (145)
Q Consensus 102 L~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~ 143 (145)
|..++.. ....++++++||+++|++||||+..+....+..
T Consensus 139 l~ll~~~--~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~ 178 (287)
T cd02894 139 LTLLGKL--DLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAG 178 (287)
T ss_pred HHHhCCc--chhhHHHHHHHHHHcCCCCCCcCCCCCCCCchh
Confidence 9999754 356789999999999999999998766544433
No 18
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.8e-16 Score=117.92 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=90.4
Q ss_pred ccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHHHHH
Q 046854 23 PIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWAISG 101 (145)
Q Consensus 23 ~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~al~a 101 (145)
..+.|+..+...||+-.|..|++.|+++.... .+++ ++.+.|+...|++||+|.+ .||+.+++.+++||.+
T Consensus 81 ~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~------~~d~--d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~ 152 (329)
T KOG0366|consen 81 EDGGFAGCPGHDPHLLYTLSAVQILALYDSIN------VLDR--DKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVAC 152 (329)
T ss_pred CCCCcCCCCCCChHHHHHHHHHHHHHHHcccc------cccH--HHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHH
Confidence 34556666667789999999999999997542 2233 7889999999999999988 8999999999999999
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 102 LVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 102 L~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
|..+|.. +..++++|++|+++|-|-|||||-.+.+
T Consensus 153 L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~pGa 187 (329)
T KOG0366|consen 153 LALLGKL--DTINVEKAVDFVLSCYNFDGGFGCRPGA 187 (329)
T ss_pred HHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCCCCc
Confidence 9999987 4788999999999999999999966653
No 19
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.60 E-value=1.3e-14 Score=114.36 Aligned_cols=110 Identities=20% Similarity=0.195 Sum_probs=90.3
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~al~ 100 (145)
++.+.|.....+.+++..|+.|+.+|.+++... .-..+++ +++++||+++|++||+|.. ..++.|++.|++|+.
T Consensus 61 ~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~---~~~~id~--~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava 135 (299)
T cd02893 61 NPSGGFGGGPGQLPHLATTYAAVNALAIIGTEE---AYDVIDR--EALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAIS 135 (299)
T ss_pred CCCCCCCCCCCCCccHHHHHHHHHHHHHhCCch---hhhHhhH--HHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHH
Confidence 466778777778999999999999999997421 0113444 7799999999999999977 556789999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
.+..++.. ....++++++||++||++||||+..+..
T Consensus 136 ~~~lL~~~--~~~~~~~~~~~l~~cQ~~dGGF~~~p~~ 171 (299)
T cd02893 136 VASLLNIL--TDELFEGVAEYILSCQTYEGGFGGVPGN 171 (299)
T ss_pred HHHHhCCC--chhhHHHHHHHHHHcCCCCCCcCCCCCC
Confidence 99988876 3567899999999999999999875554
No 20
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.59 E-value=1.2e-14 Score=114.84 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=83.8
Q ss_pred cccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc----CCcchhhHHHHHHHHHHHcC
Q 046854 31 IIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR----WGVCFIYSTWWAISGLVAAE 106 (145)
Q Consensus 31 ~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~----~g~~~~~~T~~al~aL~~~g 106 (145)
..+.+++..|+.||.+|.+++... ..+++ ++.++||+++|++||+|.+. +++.+++.|++||.+|..++
T Consensus 86 ~~~~~~l~~ty~Al~~L~lL~~~~-----~~idr--~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 86 KYDTGNLAMTYFALLSLLILGDDL-----SRVDR--KAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred cCCcccHHHHHHHHHHHHHhCCch-----hhhhH--HHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 347899999999999999997421 12444 89999999999999999875 56789999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 107 KTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 107 ~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
........+++.++||++||++||||+..+..
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~ 190 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGL 190 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCC
Confidence 76222356899999999999999999976643
No 21
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.58 E-value=8.8e-15 Score=119.84 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=92.3
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~al~ 100 (145)
+|.++|++.+.+.+++..|+.||.+|.+++... .. ..|++ ++.++||+++|++||+|.. .+++.+++.|++|+.
T Consensus 106 ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~-~l--~~Idr--~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAla 180 (439)
T PLN02710 106 DPNGGYGGGPGQLPHLATTYAAVNTLVTIGGER-AL--SSINR--EKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAIS 180 (439)
T ss_pred CCCcCCCCCCCCCccHHHHHHHHHHHHHcCCch-hh--cccCH--HHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHH
Confidence 467778888888999999999999999997521 01 13454 8899999999999999977 556788999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCC
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCP 140 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~ 140 (145)
.+..++.. ....+++.++||++||+.||||+..+..-.
T Consensus 181 il~LL~~l--~~~~~e~~~~~I~scQ~~dGGF~g~P~~Ea 218 (439)
T PLN02710 181 VASLLNIL--DDELVKGVGDYILSCQTYEGGIGGEPGAEA 218 (439)
T ss_pred HHHHhCcC--chhhHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 99999875 356789999999999999999997765443
No 22
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.55 E-value=9e-16 Score=103.35 Aligned_cols=69 Identities=41% Similarity=0.591 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 66 IINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 66 i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
|+++++||++.|++||+|...++ .....|++++.+|..++.. ...+.|+|+++||+++|++||||+...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~-~~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~dG~w~~~~ 69 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG-SDVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPDGGWGYSG 69 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-TS
T ss_pred Ccccccccccccccccccccccc-ccccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCCCCCCCcC
Confidence 57899999999999999987766 4577899999999988865 578889999999999999999999763
No 23
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.54 E-value=6.9e-14 Score=109.45 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=89.4
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC-CcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW-GVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~-g~~~~~~T~~al~ 100 (145)
++.+.|...+...+++..|+.|+.+|.+++... .++ ++++++||+++|++||||..+. +++++..|++|+.
T Consensus 114 ~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~------~i~--~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cava 185 (287)
T cd02894 114 NEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLD------LID--VDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVG 185 (287)
T ss_pred CCCCCeecCCCCCchHHHHHHHHHHHHHhCCcc------hhh--HHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHH
Confidence 345566655566678888999999999996421 223 5999999999999999998744 5578889999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
+|..+|.. ....++++++||+++|+++|||...+...++.-|
T Consensus 186 sL~llg~~--~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~y 227 (287)
T cd02894 186 ALAILGSL--DLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCY 227 (287)
T ss_pred HHHHcCcc--cccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhH
Confidence 99999876 3456999999999999999999866665555444
No 24
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.54 E-value=7e-14 Score=119.53 Aligned_cols=95 Identities=26% Similarity=0.431 Sum_probs=77.1
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC-----------CcchhhHHHHHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW-----------GVCFIYSTWWAISGLV 103 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~-----------g~~~~~~T~~al~aL~ 103 (145)
.++..|+.+|.+|..++..... .++++|+++||+++|++||+|...+ +.+++..|++||+||.
T Consensus 486 ~y~YgT~~al~aL~~~G~~~~~------~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~ 559 (621)
T TIGR01787 486 NYTYGTGFVLSALAAAGRTYRN------CPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI 559 (621)
T ss_pred CCchhHHHHHHHHHHhCCcccC------CHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence 4456799999999988753211 2679999999999999999996432 2356778999999999
Q ss_pred HcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 104 AAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 104 ~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
.++.. ....++|+++||+++|++||+|++...
T Consensus 560 ~ag~~--~~~ai~rgv~~L~~~Q~~dG~w~~~~~ 591 (621)
T TIGR01787 560 AAGEA--DSEAIERGVKYLLETQRPDGDWPQEYI 591 (621)
T ss_pred HcCcc--chHHHHHHHHHHHHhCCCCCCCCCccc
Confidence 99865 356899999999999999999986553
No 25
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.6e-14 Score=109.39 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=93.2
Q ss_pred hcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHH
Q 046854 20 LLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWA 98 (145)
Q Consensus 20 ~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~a 98 (145)
-+.+.+.|+..+...+++..|.+||++|+++...+ .. ..+++ ++..+||..+|+|||+|.+ .+|+.+++..++|
T Consensus 87 ~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~-~~--~~idr--~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~a 161 (342)
T COG5029 87 CVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLD-VL--SRIDR--DSLASFISGLKNPDGSFRSDLEGEVDTRFLYIA 161 (342)
T ss_pred eecCCCCcCCCCccchhHHHHHHHHHHHHHhcccc-cc--chhhH--HHHHHHHHhccCCCCceecccCCcchHHHHHHH
Confidence 33456678888888899999999999999996432 11 13344 6799999999999999987 7899999999999
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 99 ISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 99 l~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
+..|+.+|.. +.+..+.+++||++|||.|||||-.+..
T Consensus 162 l~ilsllg~~--~~~~~e~~vdyl~kCqnyeGGFg~~p~a 199 (342)
T COG5029 162 LSILSLLGDL--DKELFEGAVDYLKKCQNYEGGFGLCPYA 199 (342)
T ss_pred HHHHHHHhhc--chhhhHHHHHHHHHhhccCCcccCCCch
Confidence 9999999854 5788899999999999999999976654
No 26
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.54 E-value=8.8e-14 Score=106.03 Aligned_cols=94 Identities=34% Similarity=0.471 Sum_probs=81.1
Q ss_pred cCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCc
Q 046854 33 EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNC 112 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~ 112 (145)
+.+++..|+++|.+|..++...+ +..++++++||.++|++||+| ..++..+++.|++++.+|..++.. ..
T Consensus 136 ~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~~aL~~~~~~--~~ 205 (300)
T cd00688 136 DESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAAAALALLGDL--DS 205 (300)
T ss_pred CCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHHHHHHHcCCc--ch
Confidence 45788899999999999875321 346899999999999999999 677778899999999999999874 45
Q ss_pred HHHHHHHHHHHhcccCCCCcCCCC
Q 046854 113 LPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 113 ~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
..++++++||+++|.++|||+...
T Consensus 206 ~~~~~~~~~L~~~q~~~g~~~~~~ 229 (300)
T cd00688 206 PDAKKALRWLLSRQRPDGGWGEGR 229 (300)
T ss_pred HHHHHHHHHHHHhcCCCCCcCccc
Confidence 789999999999999999998664
No 27
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.52 E-value=1.5e-13 Score=117.74 Aligned_cols=103 Identities=26% Similarity=0.289 Sum_probs=77.6
Q ss_pred cccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc-C----------------C-----
Q 046854 31 IIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-W----------------G----- 88 (145)
Q Consensus 31 ~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~-~----------------g----- 88 (145)
...+|++++|+.||.+|..+....+. ......++++++++||+++|++||+|... . |
T Consensus 368 ~~~~pd~d~Ta~~l~AL~~~~~~~~~-~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d 446 (634)
T cd02892 368 NQGYPDSDDTAEALKALLRLQELPPF-GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMID 446 (634)
T ss_pred CCCCCCcCchHHHHHHHHHhhccCCc-chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccC
Confidence 33568889999999999998754211 11123578999999999999999999631 0 0
Q ss_pred cchhhHHHHHHHHHHHcCCCCCC-----cHHHHHHHHHHHhcccCCCCcCC
Q 046854 89 VCFIYSTWWAISGLVAAEKTYSN-----CLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 89 ~~~~~~T~~al~aL~~~g~~~~~-----~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
.+.+..|+.+|.+|..++..... .+.++||++||+++|++||||..
T Consensus 447 ~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g 497 (634)
T cd02892 447 PPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYG 497 (634)
T ss_pred CCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccc
Confidence 12334699999999998865222 26899999999999999999954
No 28
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.51 E-value=1.5e-13 Score=107.05 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=90.3
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC-CcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW-GVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~-g~~~~~~T~~al~ 100 (145)
++.+.|...+...+++..|+.||.+|.+++... +..++++++||+++|++||+|..+. +++++..|++|+.
T Consensus 112 ~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~ 183 (286)
T cd02890 112 NPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--------DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVA 183 (286)
T ss_pred CCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--------hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHH
Confidence 455556555566788999999999999997532 2356999999999999999998643 4577888999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCC-CcCCCCCCCCCCcc
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDG-GWGESYLSCPNKVK 144 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG-gwg~~~~s~~~~~~ 144 (145)
+|..+|.. ....++++++||+++|+.+| ||...+..-++.-|
T Consensus 184 sL~~l~~~--~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~y 226 (286)
T cd02890 184 SLALLGRL--DLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCY 226 (286)
T ss_pred HHHHcCCC--cccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccch
Confidence 99999986 36789999999999999998 88766665555444
No 29
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.49 E-value=5e-14 Score=95.02 Aligned_cols=67 Identities=33% Similarity=0.538 Sum_probs=54.2
Q ss_pred HHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHhcccCCCCcCCCCCCCC
Q 046854 70 VKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKA--TDFLLNIQCGDGGWGESYLSCP 140 (145)
Q Consensus 70 ~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a--~~~L~~~Q~~dGgwg~~~~s~~ 140 (145)
|+||+++|++||+|...+..+++..|++||.+|..++..+ .++++ ++||+++|++||||+..+.+.+
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~~----~~~~~~~~~~L~~~q~~dGg~~~~~~~~~ 69 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEEP----DRDRAAAVEWLLSQQNPDGGWGSNPDGGP 69 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSHH----CHHHHHHHHHHHHHB-TTSGBBSSTTTT-
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCcc----cHHHHHHHHHHHHhCCCCCCccCCCCCCC
Confidence 6899999999999986655688999999999999999873 25666 9999999999999998765443
No 30
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.48 E-value=3.9e-13 Score=102.47 Aligned_cols=93 Identities=28% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC--------cchhhHHHHHHHHHHHc
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG--------VCFIYSTWWAISGLVAA 105 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g--------~~~~~~T~~al~aL~~~ 105 (145)
.+++..|++++.+|..++...+ .....++++++||+++|++||+|..... ..+...|++++.+|..+
T Consensus 79 ~~~~~~T~~~~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~ 153 (300)
T cd00688 79 YPSLWLTAYALKALLLAGDYIA-----VDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALL 153 (300)
T ss_pred CcchHhHHHHHHHHHHcCCccc-----cCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHc
Confidence 6788999999999999875311 1245789999999999999999975321 35677899999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcccCCCCc
Q 046854 106 EKTYSNCLPIRKATDFLLNIQCGDGGW 132 (145)
Q Consensus 106 g~~~~~~~~v~~a~~~L~~~Q~~dGgw 132 (145)
+... ....++++++||.++|++||||
T Consensus 154 ~~~~-~~~~~~~~~~~l~~~q~~~g~~ 179 (300)
T cd00688 154 GKLD-PDPLIEKALDYLLSCQNYDGGF 179 (300)
T ss_pred CCCC-CcHHHHHHHHHHHHHhcCCCCc
Confidence 8762 3678999999999999999999
No 31
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.47 E-value=4.5e-13 Score=105.92 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=93.3
Q ss_pred CccccccCcc---ccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHH
Q 046854 22 NPIEFLDEVI---IEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWW 97 (145)
Q Consensus 22 ~~~~~~~~~~---~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~ 97 (145)
++.++|.... ...+++-.|+.||.+|.+++...+ +.++ +++.++||+++|++||+|.. .+++.+...|++
T Consensus 126 ~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~----~~~d--~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyc 199 (307)
T cd02895 126 LPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE----EDID--KEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFC 199 (307)
T ss_pred CCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc----cccc--HHHHHHHHHHccCCCCCccCCCCCCccccHHHH
Confidence 3556677654 678899999999999999975431 1123 48999999999999999976 455678889999
Q ss_pred HHHHHHHcCCCCC-CcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 98 AISGLVAAEKTYS-NCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 98 al~aL~~~g~~~~-~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
|+.+|..++.... ....+++.++||+++|+.+|||+..+....+.-|
T Consensus 200 a~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cy 247 (307)
T cd02895 200 AIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCY 247 (307)
T ss_pred HHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccch
Confidence 9999999987621 2567899999999999999999887777666655
No 32
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.46 E-value=6.4e-13 Score=105.42 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=87.5
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC-CcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW-GVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~-g~~~~~~T~~al~ 100 (145)
++.++|........++..|+.|+.+|.+++... .+ -++++++||+++|++||+|..+. ++++...|++|+.
T Consensus 118 ~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~------~i--~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caia 189 (316)
T PLN03201 118 NEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD------KI--NVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVG 189 (316)
T ss_pred CCCCCccCCCCCCccHHHHHHHHHHHHHhCccc------hh--HHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHH
Confidence 356666654555567777999999999997532 12 25899999999999999998753 4577778999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
+|..+|..+ ....++.++||+++|..+|||...+...++.-|
T Consensus 190 aL~llg~~~--~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cy 231 (316)
T PLN03201 190 ALAITGSLH--HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCY 231 (316)
T ss_pred HHHHcCccc--cCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHH
Confidence 999998652 234577899999999999999877776666554
No 33
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.45 E-value=6e-14 Score=94.39 Aligned_cols=83 Identities=24% Similarity=0.288 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHH
Q 046854 36 YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPI 115 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v 115 (145)
++..|+.++.+|..++.. .+.++|+|+++||+++|++||+|... +..+.+.|+.++.+|...+.. ...+.+
T Consensus 25 ~~~~t~~~~~al~~~~~~-------~~~~ai~ka~~~l~~~Q~~dG~w~~~-~~~~~~~t~~~~~~l~~~~~~-~~~~~~ 95 (109)
T PF13243_consen 25 DVFVTAALILALAAAGDA-------AVDEAIKKAIDWLLSHQNPDGGWGYS-GGEYVSMTAAAIAALALAGVY-PDDEAV 95 (109)
T ss_dssp ----------------TS--------SSBSSHHHHHHHHH---TTS--S-T-S--HHHHHHHHHHHHHHHHTT---HHHH
T ss_pred cccccccccccccccCCC-------CcHHHHHHHHHHHHHhcCCCCCCCCc-CCCCHHHHHHHHHHHHHhCCC-CCCHHH
Confidence 355788888888888632 23568899999999999999999754 444566777777788777766 478899
Q ss_pred HHHHHHHHhccc
Q 046854 116 RKATDFLLNIQC 127 (145)
Q Consensus 116 ~~a~~~L~~~Q~ 127 (145)
+|+++||+++|.
T Consensus 96 ~r~~~wi~~~~~ 107 (109)
T PF13243_consen 96 ERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHH--
T ss_pred HHHHHHHHHccC
Confidence 999999999974
No 34
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.4e-13 Score=105.12 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=96.9
Q ss_pred chhhhcC-ccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhh
Q 046854 16 SWIELLN-PIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIY 93 (145)
Q Consensus 16 ~~l~~~~-~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~ 93 (145)
.+|.... |.+.|++.+...+|+..|+.|+.+|.+++... .+ +.|++ ++..+||.++.+|||+|.. .-|+.+++
T Consensus 127 ~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~-A~--~~InR--~~l~~fL~slK~~dGgFrmh~~GE~DvR 201 (423)
T KOG0365|consen 127 DFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSED-AY--SSINR--EKLYQFLFSLKDPDGGFRMHVEGEVDVR 201 (423)
T ss_pred HHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHH-HH--HHhhH--HHHHHHHHHhcCCCCCeEeecCCcchHH
Confidence 3444455 78889999999999999999999999998642 22 24666 7899999999999999976 34778999
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 94 STWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 94 ~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
+.++|+..-..+++. .++-.+-..+||++||+.+||||..+..
T Consensus 202 s~YcA~svasllni~--~deL~eG~~~wi~~CQtyEGG~GG~P~~ 244 (423)
T KOG0365|consen 202 SAYCALSVASLLNIP--MDELFEGTLDWIASCQTYEGGFGGEPGV 244 (423)
T ss_pred HHHHHHHHHHHHCCC--cHHHHHHHHHHHHhcccccCCcCCCccc
Confidence 999999999999987 3577788899999999999999977655
No 35
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.45 E-value=6.6e-13 Score=105.56 Aligned_cols=100 Identities=26% Similarity=0.283 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC--------------------Ccchhh
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW--------------------GVCFIY 93 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~--------------------g~~~~~ 93 (145)
+++++.|+.++.+|..+....+. ......+.++++++||+++|++||+|.... ..++..
T Consensus 88 ~~~~~~Ta~~l~al~~~~~~~~~-~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (348)
T cd02889 88 YPDSDDTAEALKALLRLQKKPPD-GKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVE 166 (348)
T ss_pred CCCCCChHHHHHHHHHhhccCcc-cchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcc
Confidence 35567899999999988754321 112345789999999999999999996411 112345
Q ss_pred HHHHHHHHHHHcCCCCCC-----cHHHHHHHHHHHhcccCCCCcCC
Q 046854 94 STWWAISGLVAAEKTYSN-----CLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 94 ~T~~al~aL~~~g~~~~~-----~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
.|+++|.+|..++..... .+.++++++||++.|++||+|..
T Consensus 167 ~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~ 212 (348)
T cd02889 167 CTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYG 212 (348)
T ss_pred hHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 799999999998875222 16899999999999999999953
No 36
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.35 E-value=5.9e-12 Score=103.35 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=89.8
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc-CCcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-WGVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~-~g~~~~~~T~~al~ 100 (145)
.+.++|.......+++..|+.||..|.+++...+ .-+++.++||+++|+.||||.++ +.+.+...|++||.
T Consensus 157 ~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~--------~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavA 228 (439)
T PLN02710 157 DPSGGFRMHDGGEMDVRACYTAISVASLLNILDD--------ELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLA 228 (439)
T ss_pred CCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCch--------hhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHH
Confidence 3566676655566778889999999888875321 23689999999999999999874 44678888999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
+|..+|.. ....+++.++||+++|+.+|||.-.+....+.-|
T Consensus 229 sL~LLg~l--~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CY 270 (439)
T PLN02710 229 AMILINEV--DRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCY 270 (439)
T ss_pred HHHHcCCc--cccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchh
Confidence 99999875 3456889999999999999999866666665544
No 37
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.35 E-value=1.1e-11 Score=96.89 Aligned_cols=88 Identities=19% Similarity=0.093 Sum_probs=64.4
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC---------C-cchhhHHHHHHHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW---------G-VCFIYSTWWAISGLV 103 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~---------g-~~~~~~T~~al~aL~ 103 (145)
.+++-.|++|+.+|.......+ .-+.+++|+++||++.|++||+|.... + ...+..|++++.+|.
T Consensus 77 ~~~~wlTa~v~~~L~~a~~~~~-----v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~ 151 (292)
T cd02897 77 SGSTWLTAFVLKSFAQARPFIY-----IDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALL 151 (292)
T ss_pred CcchhhHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHH
Confidence 4677789999999998864221 114689999999999999999996411 1 122457899999998
Q ss_pred HcCCCCCCcHHHHHHHHHHHhccc
Q 046854 104 AAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 104 ~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
..|.. ...+.++||++||.+.+.
T Consensus 152 ~~g~~-~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 152 EAGLP-SERPVVEKALSCLEAALD 174 (292)
T ss_pred hcCCc-cccHHHHHHHHHHHHhcc
Confidence 88865 345667777777776654
No 38
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.34 E-value=1.1e-11 Score=97.61 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=88.2
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC-CcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW-GVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~-g~~~~~~T~~al~ 100 (145)
++.++|.......+++..|+.|+..+.+++... +..++++++||+++|++||||.++. .+++.-.|++|+.
T Consensus 112 ~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~--------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcava 183 (299)
T cd02893 112 QPDGSFRMHVGGEVDVRGTYCAISVASLLNILT--------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALA 183 (299)
T ss_pred CCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHH
Confidence 355566665556678888999998888886532 2346899999999999999998744 4567778999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccC-CCCcCCCCCCCCCCcc
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCG-DGGWGESYLSCPNKVK 144 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~-dGgwg~~~~s~~~~~~ 144 (145)
+|..+|.. ....+++.++||+++|.+ +|||...+...++.-|
T Consensus 184 sL~llg~~--~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cy 226 (299)
T cd02893 184 ALAILGKP--DKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCY 226 (299)
T ss_pred HHHHcCCc--cccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHH
Confidence 99999875 345789999999999998 9999866665555433
No 39
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.20 E-value=1.5e-10 Score=91.07 Aligned_cols=98 Identities=24% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC--------C-----cchhhHHHHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW--------G-----VCFIYSTWWAIS 100 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~--------g-----~~~~~~T~~al~ 100 (145)
.+++=.|++++.+|....+..+ .-+..++++++||+++|++||+|.... | .+.+..|++++.
T Consensus 78 ~~s~wlTA~v~~~l~~a~~~~~-----v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~ 152 (297)
T cd02896 78 PSSTWLTAFVVKVFSLARKYIP-----VDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLI 152 (297)
T ss_pred CcchhhHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHH
Confidence 3455579999999998875321 114689999999999999999997532 1 124557999999
Q ss_pred HHHHcCCCC----------------------------------------CCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 101 GLVAAEKTY----------------------------------------SNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 101 aL~~~g~~~----------------------------------------~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
+|...+... ...+..+++.++|+++|+.||||++..
T Consensus 153 aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~~~~Y~~Al~ayALal~~~~~~~~a~~~L~~~~~~d~~~~~~~ 228 (297)
T cd02896 153 ALQEARSICPPEVQNLDQSIRKAISYLENQLPNLQRPYALAITAYALALADSPLSHAANRKLLSLAKRDGNGWYWW 228 (297)
T ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHcCChhhHHHHHHHHHHhhhCCCcceec
Confidence 998875410 012234577788888888888887543
No 40
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.16 E-value=2.1e-10 Score=89.52 Aligned_cols=116 Identities=9% Similarity=0.090 Sum_probs=81.2
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCc------cchhhhHHHHHHHHHHHH
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPK------HRKNEVNNFIINAVKFIE 74 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~------~~~~~i~~~i~ka~~~L~ 74 (145)
++|||||.|...+. .|+.+|+ |+| +.+..+|.+|..+....+. .+.+++..+++|+++||+
T Consensus 81 ypnGGWPQf~p~~~-~Y~~~IT----fND--------~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~IL 147 (290)
T TIGR02474 81 YPNGGWPQFYPLKG-GYSDAIT----YND--------NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECIL 147 (290)
T ss_pred CCCCCcCcccCCcC-Ccccccc----cCc--------HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 68999999998665 7888887 655 2455788888776542111 122467889999999999
Q ss_pred HhCCCCCCccccCCcchhh-------------------HHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHhcccCC
Q 046854 75 DLQKPDGSWYGRWGVCFIY-------------------STWWAISGLVAAEK-TYSNCLPIRKATDFLLNIQCGD 129 (145)
Q Consensus 75 ~~Q~~dG~w~~~~g~~~~~-------------------~T~~al~aL~~~g~-~~~~~~~v~~a~~~L~~~Q~~d 129 (145)
+.|.++|+|.+.|+..+.. -|.-.|..|..+.. .++...+|+.|++|+.+..-++
T Consensus 148 ktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g 222 (290)
T TIGR02474 148 KTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRG 222 (290)
T ss_pred HhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999988753211 14444445544432 2234567899999999997665
No 41
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.5e-10 Score=88.60 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=81.3
Q ss_pred cccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-c-CCcchhhHHHHHHHHHHHcCCC
Q 046854 31 IIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-R-WGVCFIYSTWWAISGLVAAEKT 108 (145)
Q Consensus 31 ~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~-~g~~~~~~T~~al~aL~~~g~~ 108 (145)
..+.|+...|+.+|..|..++... .++++ +..++++..+|.|||+|.. . .++++++..++|+.....++..
T Consensus 99 ~~~~~~lA~Ty~sl~~L~~lGddL-----srlDr--ksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~ 171 (347)
T KOG0367|consen 99 TYNEPHLAMTYTSLACLVILGDDL-----SRLDR--KSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFW 171 (347)
T ss_pred CCcchhHHHHHHHHHHHHHHcchH-----hhhhH--HHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccc
Confidence 467899999999999999998654 25666 7789999999999999965 2 2347899999998888888743
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 109 YSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 109 ~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
...+.++++.||+++|+.|||||..+.+
T Consensus 172 --s~iD~ek~~~yI~~~q~YdgGfg~~pg~ 199 (347)
T KOG0367|consen 172 --SGIDKEKLIGYIRSSQRYDGGFGQHPGG 199 (347)
T ss_pred --cccCHHHHHHHHHHhhccccccccCCCC
Confidence 3566789999999999999999977643
No 42
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.8e-10 Score=87.19 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=87.7
Q ss_pred chhhhc-CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc-CCcchhh
Q 046854 16 SWIELL-NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-WGVCFIY 93 (145)
Q Consensus 16 ~~l~~~-~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~-~g~~~~~ 93 (145)
.|+..+ +|+++|-+......+...-+.|+..|.+++... ..-.+.+|+||++||+=||+|+.. ..+.+.-
T Consensus 133 ~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~--------~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag 204 (342)
T COG5029 133 SFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLD--------KELFEGAVDYLKKCQNYEGGFGLCPYAEAHAG 204 (342)
T ss_pred HHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcc--------hhhhHHHHHHHHHhhccCCcccCCCchhhccc
Confidence 444444 478888775555566666888999999998543 234588899999999999999763 3446667
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCC
Q 046854 94 STWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNK 142 (145)
Q Consensus 94 ~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~ 142 (145)
.|.+|+.+|+.++.... ...+++.++||.++|.+.||+.-.+..-++.
T Consensus 205 ~tFcalaalalL~~Ld~-ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~ 252 (342)
T COG5029 205 YTFCALAALALLGKLDK-LSDVEKLIRWLAERQLSSGGLNGRSNKLVDT 252 (342)
T ss_pred hHHHHHHHHHHHhcccc-cchHHHHHHHHHHcccccCCcCCCcccCccc
Confidence 79999999999877632 2228999999999999999996554444443
No 43
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.13 E-value=3.6e-10 Score=88.46 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCCc----chhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWGV----CFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g~----~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+.|++++..|++.|++||+| +.|+. +.++.|++|+.+|..+... +.....++|+++||++.|++||||++.
T Consensus 49 ~~l~~g~~~~~~~q~~dGsf-~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~ 124 (292)
T cd02897 49 GFLRTGYQRQLTYKHSDGSY-SAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREV 124 (292)
T ss_pred HHHHHHHHHHHhccCCCCCe-ecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 45777788888899999999 45643 4678999999999987631 245789999999999999999999864
No 44
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.10 E-value=7.6e-10 Score=87.04 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCccccCCc--chhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 61 EVNNFIINAVKFIEDLQKPDGSWYGRWGV--CFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~--~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
++.+.|++++..+++.|++||+| +.|+. ..++.|++|+.+|..+... ..+...++++++||++.|++||+|.+...
T Consensus 49 ~~~~~i~~g~~r~l~~q~~dGsf-~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~ 127 (297)
T cd02896 49 EALKYIRQGYQRQLSYRKPDGSY-AAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSP 127 (297)
T ss_pred HHHHHHHHHHHHHHhccCCCCCc-cCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCC
Confidence 45677999999999999999999 55654 5677899999999877532 24578899999999999999999998765
Q ss_pred CCC
Q 046854 138 SCP 140 (145)
Q Consensus 138 s~~ 140 (145)
.++
T Consensus 128 ~~~ 130 (297)
T cd02896 128 VIH 130 (297)
T ss_pred ccC
Confidence 443
No 45
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.04 E-value=2.8e-09 Score=82.35 Aligned_cols=87 Identities=23% Similarity=0.129 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc----------chhhHHHHHHHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV----------CFIYSTWWAISGLV 103 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~----------~~~~~T~~al~aL~ 103 (145)
.+++-.|++++.+|..+.+..+ .-++.++|+++||++.|++||+|...+.. .....|+.|+.+|.
T Consensus 76 ~~~~~~Ta~~~~~L~~a~~~~~-----v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~ 150 (282)
T cd02891 76 SGSTWLTAYVVKFLSQARKYID-----VDENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALA 150 (282)
T ss_pred CCchHHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHH
Confidence 3566789999999998865321 11467999999999999999999763321 23457999999999
Q ss_pred HcCCCCCCcHHHHHHHHHHHhccc
Q 046854 104 AAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 104 ~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
..|.. ....+.++++||.+++.
T Consensus 151 ~~g~~--~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 151 EAGKA--CDASIEKALAYLETQLD 172 (282)
T ss_pred Hhccc--chHHHHHHHHHHHHhcc
Confidence 88875 25788999999998765
No 46
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.02 E-value=2.1e-09 Score=83.93 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=65.9
Q ss_pred ChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcc------hhh---HHHHHHHHHHHc-
Q 046854 36 YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVC------FIY---STWWAISGLVAA- 105 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~------~~~---~T~~al~aL~~~- 105 (145)
+-..|...|..|+.+..... ...+.+++.|+++||++.|.++|||+..+-.. -++ .+..+|.+|..+
T Consensus 42 DN~aT~~e~~fLa~~y~~t~---d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~ 118 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQQEK---NAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIA 118 (290)
T ss_pred cCccHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHH
Confidence 34578888888888765432 23567899999999999999999998644210 011 245666666544
Q ss_pred -CCC----------CCCcHHHHHHHHHHHhcccCCCCc
Q 046854 106 -EKT----------YSNCLPIRKATDFLLNIQCGDGGW 132 (145)
Q Consensus 106 -g~~----------~~~~~~v~~a~~~L~~~Q~~dGgw 132 (145)
+.. .+...+++||++||++.|-++|||
T Consensus 119 ~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 119 NGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred hccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 111 124678999999999999888754
No 47
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.02 E-value=1.6e-09 Score=83.71 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCccccCC---cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 60 NEVNNFIINAVKFIEDLQKPDGSWYGRWG---VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 60 ~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g---~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
.++...|++++++|++.|++||||+ -|+ .++.+.|++|+.+|..+... ....+.++|++.||+++|.+||+|.+.
T Consensus 45 ~~~~~~i~~~~~~l~~~Q~~dGgf~-~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~ 123 (282)
T cd02891 45 EKALEYIRKGYQRLLTYQRSDGSFS-AWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFREL 123 (282)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcc-ccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCC
Confidence 3577889999999999999999994 453 35788999999999876432 245788999999999999999999876
Q ss_pred CCCC
Q 046854 136 YLSC 139 (145)
Q Consensus 136 ~~s~ 139 (145)
...+
T Consensus 124 ~~~~ 127 (282)
T cd02891 124 GPVI 127 (282)
T ss_pred CCcc
Confidence 6544
No 48
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.94 E-value=4.6e-09 Score=80.60 Aligned_cols=100 Identities=23% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
+.||||+.| ... .++++-.|++++..|....+...- -...|.++++||+++|++|
T Consensus 11 ~~DGsfs~f-~~~-------------------~~~s~WLTAfv~k~f~~a~~~i~v-----d~~~i~~a~~wL~~~Q~~d 65 (246)
T PF07678_consen 11 RSDGSFSAF-SSD-------------------SPSSTWLTAFVVKVFSQAKKYIFV-----DENVICRAVKWLISQQQPD 65 (246)
T ss_dssp -TTSSBBSS-TTT-------------------SSBBHHHHHHHHHHHHHHTTTS-C-----EHHHHHHHHHHHHHHBETT
T ss_pred CCCCCeecc-ccC-------------------CcccHHHHHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHhhcCC
Confidence 468888888 322 246677899999999988654311 1367899999999999999
Q ss_pred CCccccCC----------cchhhHHHHHHHHHHHcCCC-----CCCcHHHHHHHHHHHhc
Q 046854 81 GSWYGRWG----------VCFIYSTWWAISGLVAAEKT-----YSNCLPIRKATDFLLNI 125 (145)
Q Consensus 81 G~w~~~~g----------~~~~~~T~~al~aL~~~g~~-----~~~~~~v~~a~~~L~~~ 125 (145)
|+|...-. ...+..|++++.+|...+.. +.....++||++||.+.
T Consensus 66 G~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 66 GSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH 125 (246)
T ss_dssp SEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH
T ss_pred CccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Confidence 99965211 12455799999999998721 14568899999999876
No 49
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8e-09 Score=81.84 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=82.1
Q ss_pred cccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc-chhhHHHHHHHHHHHcCCCC
Q 046854 31 IIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV-CFIYSTWWAISGLVAAEKTY 109 (145)
Q Consensus 31 ~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~-~~~~~T~~al~aL~~~g~~~ 109 (145)
..|-+-+=.-++.|.+|.++....+ ++..+++|+||..+|.|.|||.+..|. .+.-.|+.||.+|+.+|...
T Consensus 94 ~LDASR~Wm~YWil~sl~lL~~~~d-------d~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~ 166 (423)
T KOG0365|consen 94 CLDASRPWMCYWILNSLALLDEWLD-------DDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSED 166 (423)
T ss_pred ccccCcchhHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHH
Confidence 4577777888999999999985433 457799999999999999999887775 67788999999999998762
Q ss_pred C-CcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 110 S-NCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 110 ~-~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
. ...+.++-.+||.++.++||||.-...
T Consensus 167 A~~~InR~~l~~fL~slK~~dGgFrmh~~ 195 (423)
T KOG0365|consen 167 AYSSINREKLYQFLFSLKDPDGGFRMHVE 195 (423)
T ss_pred HHHHhhHHHHHHHHHHhcCCCCCeEeecC
Confidence 1 345677899999999999999975443
No 50
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.3e-08 Score=78.14 Aligned_cols=111 Identities=17% Similarity=0.104 Sum_probs=83.7
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC-cchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG-VCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g-~~~~~~T~~al~ 100 (145)
+++++|.+-.+..-+.--++.|+.+|++++... .-.+++||+|+++|-|-||+|..+.| +++.-..++++.
T Consensus 128 ~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld--------~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvg 199 (329)
T KOG0366|consen 128 QEDGSFSGDIWGEVDTRFSYCAVACLALLGKLD--------TINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVG 199 (329)
T ss_pred CcCCcccCCcccccchhhhHHHHHHHHHHhhHH--------HhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHH
Confidence 467777763333333445677888888887653 12479999999999999999987666 467777889999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCC
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNK 142 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~ 142 (145)
+|+.+|..+ ....++.-.||..+|.+.||-.-.+..-++-
T Consensus 200 aLai~~~L~--~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDV 239 (329)
T KOG0366|consen 200 ALAITGKLH--LVDRDLLGWWLCERQLPSGGLNGRPEKLPDV 239 (329)
T ss_pred HHHHccchh--hcCHHHHHHHHHhccCCCCCCCCCcccCcch
Confidence 999999873 4556788999999999999997666555543
No 51
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.88 E-value=6.1e-09 Score=59.41 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCCCccccCCc-chhhHHHHHHHHHHHcC
Q 046854 66 IINAVKFIEDLQKPDGSWYGRWGV-CFIYSTWWAISGLVAAE 106 (145)
Q Consensus 66 i~ka~~~L~~~Q~~dG~w~~~~g~-~~~~~T~~al~aL~~~g 106 (145)
++++++||+++|++||+|..+++. ++++.|++++.+|+.+|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 489999999999999999987764 68999999999999875
No 52
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=98.84 E-value=8.2e-09 Score=87.81 Aligned_cols=92 Identities=26% Similarity=0.366 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC-------------cchhhHHHHHHHHHHH
Q 046854 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG-------------VCFIYSTWWAISGLVA 104 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g-------------~~~~~~T~~al~aL~~ 104 (145)
..|.+++.+|+..++... .-.+++|+++||++.|++||+|+-.+- .+.+.+|++|+++|..
T Consensus 618 Y~t~Fa~~gl~aaGkty~------nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~ 691 (760)
T KOG0497|consen 618 YGTWFALRGLAAAGKTYE------NCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIM 691 (760)
T ss_pred HHHHHhcchhhhcchhhh------ccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHh
Confidence 478899999999887652 246899999999999999999964321 2456689999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 105 AEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 105 ~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
.|...++...+.||...|.+.|.++|.|+..
T Consensus 692 ~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq 722 (760)
T KOG0497|consen 692 AGQAERDPLPLHRAAKVLINSQLENGDFPQQ 722 (760)
T ss_pred cCCcccccchHHHHHHHHHhcccccCCcchh
Confidence 9998666668999999999999999999855
No 53
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=98.71 E-value=8.3e-08 Score=76.21 Aligned_cols=95 Identities=27% Similarity=0.289 Sum_probs=74.5
Q ss_pred cCCChhHHHHHHHHHHHhhhhCCc--cchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCC
Q 046854 33 EHDYVECTASALKAMTLFQKLHPK--HRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYS 110 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~~--~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~ 110 (145)
++-++|++++|+.||.++.+..+. ....+|..++++.++.|++.|.+||.|+ ++|.|+.|++||...+..+.
T Consensus 182 ~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~ 255 (326)
T PF01122_consen 182 SQFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPS 255 (326)
T ss_dssp STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SS
T ss_pred CCCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCc
Confidence 567899999999999999865432 1235788999999999999999999984 58899999999999988743
Q ss_pred C-cHHHHHHHHHHHhcccCCCCcCC
Q 046854 111 N-CLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 111 ~-~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
. ..+..+++++|+... ++|.|..
T Consensus 256 ~~~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 256 ESEWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTT-S
T ss_pred chhhHHHHHHHHHHHHh-hcCCCCC
Confidence 2 478999999999964 6999874
No 54
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.55 E-value=3.7e-07 Score=71.51 Aligned_cols=98 Identities=13% Similarity=0.293 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc------chhh---HHHHHHHHHHHc--
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV------CFIY---STWWAISGLVAA-- 105 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~------~~~~---~T~~al~aL~~~-- 105 (145)
-+.|...|..|+.+.... ..+.+..++.|+++||++.|.|+|||+..|-. .-++ ...-+|..|..+
T Consensus 38 N~aT~~ei~fLa~~y~~t---~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~ 114 (289)
T PF09492_consen 38 NDATTTEIRFLARVYQAT---KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAE 114 (289)
T ss_dssp GGTTHHHHHHHHHHHHHC---G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHC
T ss_pred ChhHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHh
Confidence 467889999998887653 23467889999999999999999999875411 1111 234444555443
Q ss_pred CCC-C---------CCcHHHHHHHHHHHhcccC-CC---CcCCCCC
Q 046854 106 EKT-Y---------SNCLPIRKATDFLLNIQCG-DG---GWGESYL 137 (145)
Q Consensus 106 g~~-~---------~~~~~v~~a~~~L~~~Q~~-dG---gwg~~~~ 137 (145)
+.. . +...+++|++++|+.+|-. +| +|..+..
T Consensus 115 ~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD 160 (289)
T PF09492_consen 115 GKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHD 160 (289)
T ss_dssp T-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccC
Confidence 222 1 2357899999999999972 44 7875544
No 55
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.6e-06 Score=67.65 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=82.0
Q ss_pred cccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc-chhhHHHHHHHHH
Q 046854 24 IEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV-CFIYSTWWAISGL 102 (145)
Q Consensus 24 ~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~-~~~~~T~~al~aL 102 (145)
.+.|+-.+.+.+|-..|+.||.+|+++++.-|..-.+ +.-+++.++|++..|..+|||.++-.- .++--..|+...|
T Consensus 190 dgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~--~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasL 267 (347)
T KOG0367|consen 190 DGGFGQHPGGESHGGATFCALASLALMGKLIPEELSN--TSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASL 267 (347)
T ss_pred ccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhcc--ccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHH
Confidence 3445556677789999999999999998874321100 122799999999999999999886542 3443455666666
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhcccCC-CCcCCCCCCCCC
Q 046854 103 VAAEKTYSNCLPIRKATDFLLNIQCGD-GGWGESYLSCPN 141 (145)
Q Consensus 103 ~~~g~~~~~~~~v~~a~~~L~~~Q~~d-Ggwg~~~~s~~~ 141 (145)
..++..+ -...++...||+++|..= |||.-.+...++
T Consensus 268 klL~~~~--~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD 305 (347)
T KOG0367|consen 268 KLLDADW--LIDKQVLRKFLLSTQDKLIGGFSKWPEEDPD 305 (347)
T ss_pred HHccchH--hhhHHHHHHHHHHhhhhhcCcccCCCccCch
Confidence 6666552 344567889999999885 999988877665
No 56
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.34 E-value=1.6e-06 Score=66.48 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCCCCccccC---CcchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 69 AVKFIEDLQKPDGSWYGRW---GVCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 69 a~~~L~~~Q~~dG~w~~~~---g~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
+..-+++.|++||+|+. | ..+.+..|++++..|..+... ..+...+.++++||+++|++||+|.+...-
T Consensus 2 GYqr~L~y~~~DGsfs~-f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~ 74 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSA-FSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPV 74 (246)
T ss_dssp HHHHHHTTB-TTSSBBS-STTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-
T ss_pred chHHHhcCCCCCCCeec-cccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCc
Confidence 45668899999999964 4 346789999999999987543 245788999999999999999999876543
No 57
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.21 E-value=6.9e-07 Score=50.81 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcccCCCCcCCCCCCCCCCc
Q 046854 114 PIRKATDFLLNIQCGDGGWGESYLSCPNKV 143 (145)
Q Consensus 114 ~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~ 143 (145)
+++++++||+++|++||||+..+.+..+..
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~ 31 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTC 31 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChH
Confidence 588999999999999999999888865543
No 58
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.90 E-value=3.2e-05 Score=58.25 Aligned_cols=63 Identities=25% Similarity=0.406 Sum_probs=50.8
Q ss_pred cCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc--CCcchhhHHHHHHHHHHHc
Q 046854 33 EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR--WGVCFIYSTWWAISGLVAA 105 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~--~g~~~~~~T~~al~aL~~~ 105 (145)
-||++..|..|+..|.+++... .+.+-++||++.||+||||.-+ .|.+-.-.|+.||..|..+
T Consensus 207 yPPYiE~t~ya~r~lelL~~k~----------~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~l 271 (274)
T COG1689 207 YPPYIEPTFYALRGLELLGGKY----------CISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLASL 271 (274)
T ss_pred CCCccchHHHHHhHHHHHccCc----------CchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHHH
Confidence 4799999999999999998642 4577899999999999999753 3556556788988888654
No 59
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.73 E-value=2.4e-05 Score=65.61 Aligned_cols=92 Identities=27% Similarity=0.459 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC-----------cchhhHHHHHHHHHHH
Q 046854 36 YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG-----------VCFIYSTWWAISGLVA 104 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g-----------~~~~~~T~~al~aL~~ 104 (145)
.+..|..++.+|..++... ++...+++++.||..+|.++|+|...+. .+..-.|.+|+.++..
T Consensus 379 ~iY~~s~a~~~l~~~g~~~------~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~ 452 (517)
T COG1657 379 YIYGTSGALSALALVGETD------ENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLT 452 (517)
T ss_pred EEEehhhhhhhhhccCccc------cchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHH
Confidence 4567888999998887532 3456889999999999999999976332 1223358888888877
Q ss_pred cCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 105 AEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 105 ~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
.... +...+++.++++.+.|.++|.|+..
T Consensus 453 a~~~--~~~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 453 ALEP--NQEAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred hccc--chhhhcccccccccCcCCCCccccc
Confidence 7665 4566999999999999999999743
No 60
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.60 E-value=0.00019 Score=54.11 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=55.1
Q ss_pred cccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC
Q 046854 31 IIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT 108 (145)
Q Consensus 31 ~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~ 108 (145)
-++.|....|.. ||..++...+ .++...|-.. --.+|+|.-..+ .+++-.|..|+..|..++..
T Consensus 162 Gv~~pnt~~t~~---aly~l~~k~~----------~~~v~~Fe~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k 227 (274)
T COG1689 162 GVTHPNTTMTYQ---ALYTLGSKGP----------KEEVRHFELC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK 227 (274)
T ss_pred ccCCcchHHHHH---HHHhhccccc----------hHHHHhHHhc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccC
Confidence 345565555554 4444543222 1333344333 235576643222 24566899999999999876
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 109 YSNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 109 ~~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
-.+.+-++||.+.||+||||..+.
T Consensus 228 ----~~i~~~~rFI~slqN~nGGFRRS~ 251 (274)
T COG1689 228 ----YCISDHIRFIRSLQNQNGGFRRSY 251 (274)
T ss_pred ----cCchHHHHHHHHhhcCCCCeeeeE
Confidence 346778999999999999997543
No 61
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.33 E-value=0.00027 Score=55.57 Aligned_cols=119 Identities=11% Similarity=0.223 Sum_probs=65.8
Q ss_pred CCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCcc------chhhhHHHHHHHHHHHHH
Q 046854 2 KSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKH------RKNEVNNFIINAVKFIED 75 (145)
Q Consensus 2 ~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~------~~~~i~~~i~ka~~~L~~ 75 (145)
++||||-|-+.+. .|..+|. |+| +....+|..|..+....++. ....+..++.|++++|++
T Consensus 77 pnGGWPQ~yP~~~-~Y~~~IT----fND--------dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~ 143 (289)
T PF09492_consen 77 PNGGWPQFYPLRG-GYHDHIT----FND--------DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILK 143 (289)
T ss_dssp TTS--BSECS--S-GGGGSEE-----GG--------GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCCCC-CCCCceE----Ecc--------HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999887543 3666664 444 34666777777765443322 234577899999999999
Q ss_pred hCCC-C---CCcccc---------CCcch------hhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcC
Q 046854 76 LQKP-D---GSWYGR---------WGVCF------IYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWG 133 (145)
Q Consensus 76 ~Q~~-d---G~w~~~---------~g~~~------~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg 133 (145)
.|-. + .+|... |...+ ..-|+-+|..|..+-.+ ++...+|+.|++||.++.-++.-|-
T Consensus 144 tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~~ 221 (289)
T PF09492_consen 144 TQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRWE 221 (289)
T ss_dssp HS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE-
T ss_pred HHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCceeE
Confidence 9983 2 445321 11000 11255555555444322 1235678889999998887766543
No 62
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.12 E-value=0.0015 Score=57.86 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCc---chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 65 FIINAVKFIEDLQKPDGSWYGRWGV---CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 65 ~i~ka~~~L~~~Q~~dG~w~~~~g~---~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
.-.++++||+..|.+||+|+..-.. ..+-.|..||.||...+.. ...++|++.||.+.
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~i~rGl~fi~~n 176 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH---PEKCEKGMSFFREN 176 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc---HHHHHHHHHHHHHH
Confidence 4468999999999999999653211 2345799999999887655 47789999999864
No 63
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.021 Score=53.62 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc----chhhHHHHHHHHHHHcCCC-CCC
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV----CFIYSTWWAISGLVAAEKT-YSN 111 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~----~~~~~T~~al~aL~~~g~~-~~~ 111 (145)
...+..++.-|-.-.+..|..+ +...+.++.++.-++..+++||+|+ .||. ..+..|+++|..|..+... ..+
T Consensus 945 faPni~v~~YL~~t~q~~~~~k-~ka~~~l~~GyqrqL~yk~~DgSyS-aFg~~~~~~stWLtafvlr~f~~a~~~i~id 1022 (1436)
T KOG1366|consen 945 FAPNIYVLKYLPKTNQLTPELK-RKALKFLEQGYQRQLTYKRADGSYS-AFGSSDRSGSTWLTAFVLRVFSQAKEYIFID 1022 (1436)
T ss_pred ccchhhHHHHHhhhhccChhHH-HHHHHHHHHHHHHHHhhhccCCChh-hhcCCCCcccHHHHHHHHHHhhhccCceEec
Confidence 3446667777666654433221 1223356666677777899999995 4554 4577899999999887432 134
Q ss_pred cHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 112 CLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
...+.+|++||.++|.++|.|-+..
T Consensus 1023 ~~~i~~a~~wl~~~Qk~~GsF~e~~ 1047 (1436)
T KOG1366|consen 1023 PNVITQALNWLSQQQKENGSFKEVG 1047 (1436)
T ss_pred HHHHHHHHHHHHHhhccCceEeccc
Confidence 6779999999999999999997554
No 64
>PLN02279 ent-kaur-16-ene synthase
Probab=96.24 E-value=0.008 Score=53.35 Aligned_cols=58 Identities=24% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCC-----cchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWG-----VCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLN 124 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g-----~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~ 124 (145)
+.-..+++||+..|.+||+|+..-. ...+-+|..||.||...+.. ...++|++.||.+
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~---~~~~~~gl~fi~~ 135 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG---EEQINKGLQFIEL 135 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC---cccchhhHHHHHH
Confidence 3457899999999999999963211 12245799999999988765 3446888888874
No 65
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.93 E-value=0.05 Score=43.30 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHhhhhCCc-c-chhhhHHHHHHHHHHHHHhCCCCCCccccCCc------chhhHHHHHHHHHHH---cC
Q 046854 38 ECTASALKAMTLFQKLHPK-H-RKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV------CFIYSTWWAISGLVA---AE 106 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~-~-~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~------~~~~~T~~al~aL~~---~g 106 (145)
-..+.++.+|+.+.+..|. . ..+.+.+..++.++.|...|.+||.|...... .++-+|+++..+|.. .|
T Consensus 187 RG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g 266 (336)
T PF07470_consen 187 RGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLG 266 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcC
Confidence 3457777777766544332 1 12346667888899999999999999753221 345578888888843 35
Q ss_pred CCC--CCcHHHHHHHHHHHhc-ccCCCC
Q 046854 107 KTY--SNCLPIRKATDFLLNI-QCGDGG 131 (145)
Q Consensus 107 ~~~--~~~~~v~~a~~~L~~~-Q~~dGg 131 (145)
... ...+.++|+++.|++. -++||.
T Consensus 267 ~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 267 LLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp SSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred CCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 441 3467899999999999 778887
No 66
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.80 E-value=0.015 Score=51.77 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=30.6
Q ss_pred chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 90 CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 90 ~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+.+|.|+++-+.=..-|. ..+...++++||++.|.+|||||..
T Consensus 95 ~S~YDTAWVAmVp~~~g~---~~p~FP~~~~wIl~nQ~~DGsWG~~ 137 (800)
T PLN02592 95 ISAYDTAWVALVEDINGS---GTPQFPSSLQWIANNQLSDGSWGDA 137 (800)
T ss_pred CcHHHhHHHhhcccCCCC---CCCCCHHHHHHHHHccCCCCCCCCC
Confidence 457899994222221122 2466779999999999999999975
No 67
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=95.00 E-value=0.22 Score=39.96 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCC--------CC
Q 046854 40 TASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTY--------SN 111 (145)
Q Consensus 40 T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~--------~~ 111 (145)
-+.++.||+..+.. .....+.-|.+.++.+..+. +...+...++|++||.-+.... ..
T Consensus 148 ~sL~vLALCv~~~~-----------~~~~~v~kL~~~~~~~~~~~---~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i 213 (326)
T PF01122_consen 148 YSLGVLALCVHNKR-----------VSLSVVAKLLKAENHNFYHG---SQFSVDTGAMAVLALTCVKNSNPNGPELRRRI 213 (326)
T ss_dssp HHHHHHHHHHTTHH-----------HHHHHHHHHHHHHHSSTSS----STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHH
T ss_pred hHHHHHHHHccCCC-----------cCHHHHHHHHHHHHhhcccC---CCCCccHHHHHHHHHHHHhccCcCcHhHHHHH
Confidence 34566666666542 11333444444444552221 1123556789999997663321 12
Q ss_pred cHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 112 CLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
..++++.++.|++.|.+||-||..+.
T Consensus 214 ~~~i~~~~~kIl~~q~~~G~~GNiyS 239 (326)
T PF01122_consen 214 QQAIRSLVEKILSQQKPNGLFGNIYS 239 (326)
T ss_dssp HHHHHHHHHHHHHTB-TTS-BSSTTT
T ss_pred HHHHHHHHHHHHHhcCCCCcccchhh
Confidence 45677888889999999999996553
No 68
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=94.40 E-value=0.15 Score=44.23 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCC-CCcccc------------CCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC
Q 046854 64 NFIINAVKFIEDLQKPD-GSWYGR------------WGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~d-G~w~~~------------~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG 130 (145)
..+++.+--|+.++.++ |++-+. ++-+..+.++++++||..+|.. ..+++.++||.+.|.+||
T Consensus 256 ~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~G 331 (616)
T TIGR01577 256 SLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQSRDG 331 (616)
T ss_pred HHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcCC
Confidence 45677766677777766 874221 2224456789999999999976 778999999999999999
Q ss_pred CcC
Q 046854 131 GWG 133 (145)
Q Consensus 131 gwg 133 (145)
.|-
T Consensus 332 ~~~ 334 (616)
T TIGR01577 332 SWQ 334 (616)
T ss_pred Ccc
Confidence 984
No 69
>PLN02279 ent-kaur-16-ene synthase
Probab=94.06 E-value=0.037 Score=49.21 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=31.2
Q ss_pred chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 90 CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 90 ~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+..|.|+++-+.=.. +. ...+...++++||++.|.+||+||..
T Consensus 53 ~s~YDTAWvamv~~~-~~--~~~p~Fp~~~~wil~nQ~~dGsWg~~ 95 (784)
T PLN02279 53 VSSYDTAWVAMVPSP-NS--QQAPLFPECVKWLLENQLEDGSWGLP 95 (784)
T ss_pred CchhhhHHHHhcccC-CC--CCCCCChHHHHHHHhcCCCCCCCCCC
Confidence 357889997433222 22 23567788999999999999999965
No 70
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=92.91 E-value=0.44 Score=41.75 Aligned_cols=69 Identities=14% Similarity=0.314 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHhCCCC--CCccc----cCCc------------chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q 046854 62 VNNFIINAVKFIEDLQKPD--GSWYG----RWGV------------CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLL 123 (145)
Q Consensus 62 i~~~i~ka~~~L~~~Q~~d--G~w~~----~~g~------------~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~ 123 (145)
..+.+++.+--|+.++..+ |+.-+ +|++ +-.+..++++.||..+|.. ...++.++||+
T Consensus 249 ~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~----~~a~~~~~~l~ 324 (648)
T TIGR01535 249 GNSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDV----DSALRSLDYLA 324 (648)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCH----HHHHHHHHHHH
Confidence 4567788888888888763 88733 2321 3356789999999999976 67889999999
Q ss_pred hcccCCCCcCC
Q 046854 124 NIQCGDGGWGE 134 (145)
Q Consensus 124 ~~Q~~dGgwg~ 134 (145)
+.|.++|.|-+
T Consensus 325 ~~~~~~G~~lq 335 (648)
T TIGR01535 325 KVQQDNGMFPQ 335 (648)
T ss_pred HHhccCCCcCc
Confidence 99999999843
No 71
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=92.07 E-value=0.69 Score=40.53 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc--------CCcchhhHHHHHHHHHHHc---C
Q 046854 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR--------WGVCFIYSTWWAISGLVAA---E 106 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~--------~g~~~~~~T~~al~aL~~~---g 106 (145)
-..++++.||..++.. +..++.++||.+.|.++|.|... |..-..-.++..|.++..+ +
T Consensus 298 RD~a~~a~AL~~~G~~----------~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~ 367 (648)
T TIGR01535 298 RDLYQVANAFLAAGDV----------DSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYD 367 (648)
T ss_pred hhHHHHHHHHHHCCCH----------HHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcC
Confidence 3467777777777742 34699999999999999998543 2212223456666655443 3
Q ss_pred CCCCCcHHHHHHHHHHHhcc
Q 046854 107 KTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 107 ~~~~~~~~v~~a~~~L~~~Q 126 (145)
.. .....|+++++||.+.-
T Consensus 368 ~~-~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 368 HA-FYDKMLKPAADFIVKNG 386 (648)
T ss_pred cH-HHHHHHHHHHHHHHHcC
Confidence 32 34578999999999973
No 72
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=92.03 E-value=1.3 Score=35.85 Aligned_cols=90 Identities=19% Similarity=0.098 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhhCCc-c-chhhhHHHHHHHHHHHHHhCCCCCCccccCC--cc----hhhHHHHHHHHHHH---cCCC-
Q 046854 41 ASALKAMTLFQKLHPK-H-RKNEVNNFIINAVKFIEDLQKPDGSWYGRWG--VC----FIYSTWWAISGLVA---AEKT- 108 (145)
Q Consensus 41 ~~al~aL~~~~~~~~~-~-~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~----~~~~T~~al~aL~~---~g~~- 108 (145)
+.++.+|..+-...|. + ...++...++..++=|+++|.++|-|..--. .. .+-+|+.-+.+|.. .|..
T Consensus 207 gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~ 286 (357)
T COG4225 207 GWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILD 286 (357)
T ss_pred chHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCC
Confidence 3444444444333332 2 1235667888999999999999999965211 11 12245555566655 5654
Q ss_pred CCCcHHHHHHHHHHHhcccCCC
Q 046854 109 YSNCLPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 109 ~~~~~~v~~a~~~L~~~Q~~dG 130 (145)
++..+.++||++=|+.+-.++|
T Consensus 287 ~~~~~~~~kA~~aLl~~i~~~g 308 (357)
T COG4225 287 PEYAPVAEKALDALLGHIDEEG 308 (357)
T ss_pred chhhHHHHHHHHHHHhhccccc
Confidence 2456899999999999988776
No 73
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=91.67 E-value=1.3 Score=42.77 Aligned_cols=93 Identities=22% Similarity=0.214 Sum_probs=63.7
Q ss_pred ccCCChhHHHHHHHHHHHhhhhCCcc--chhhhHHHHHHHHHHHHHhCCCCCCccccCC---cchhhHHHHHHHHHHHcC
Q 046854 32 IEHDYVECTASALKAMTLFQKLHPKH--RKNEVNNFIINAVKFIEDLQKPDGSWYGRWG---VCFIYSTWWAISGLVAAE 106 (145)
Q Consensus 32 ~d~~~~~~T~~al~aL~~~~~~~~~~--~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g---~~~~~~T~~al~aL~~~g 106 (145)
..+.+...|+..+..|..+.+...+. ....+...++.++.-|.+.|..+|+|. -|+ ..+.+.|+.|+.+|..+.
T Consensus 1165 YPygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~-~W~~~~~~d~~ltaYa~~Fl~~A~ 1243 (1621)
T COG2373 1165 YPYGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFG-LWGGNGSGDPWLTAYAVDFLLRAR 1243 (1621)
T ss_pred CCccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCcee-ecCCCCCcchhhhHHHHHHHhhhh
Confidence 34567777877777777765543322 223456789999999999999999984 343 356778889988888763
Q ss_pred CCC--CCcHHHHHHHHHHHhc
Q 046854 107 KTY--SNCLPIRKATDFLLNI 125 (145)
Q Consensus 107 ~~~--~~~~~v~~a~~~L~~~ 125 (145)
... ....++.++.+++++.
T Consensus 1244 e~g~~vp~~~~~~~~~~~~~~ 1264 (1621)
T COG2373 1244 EQGYSVPSDALNQMLERLLEY 1264 (1621)
T ss_pred hcCcCCCHHHHHHHHHHHHHH
Confidence 321 3467788886655443
No 74
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=91.39 E-value=1.8 Score=34.67 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCC-CC-CCccccC---Cc-----chhhHHHHHHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQK-PD-GSWYGRW---GV-----CFIYSTWWAISGLVA 104 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~-~d-G~w~~~~---g~-----~~~~~T~~al~aL~~ 104 (145)
..+..+++.|.+|+.+..... .++..+.++++++||.+.-. ++ |+|.... |. .+.+.-++++.||+.
T Consensus 50 k~~~~~ar~i~~~a~a~~~~~---~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~ 126 (384)
T cd00249 50 RRLWLQARQVYCFAVAYLLGW---RPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQ 126 (384)
T ss_pred CeEEEecHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHH
Confidence 556678999999998765431 12345678999999999654 46 8885422 11 246778888888887
Q ss_pred cCC---CCCCcHHHHHHHHHHHhccc-CCCCcC
Q 046854 105 AEK---TYSNCLPIRKATDFLLNIQC-GDGGWG 133 (145)
Q Consensus 105 ~g~---~~~~~~~v~~a~~~L~~~Q~-~dGgwg 133 (145)
+.. ++......++.+++|.+..- ++|++-
T Consensus 127 ~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~ 159 (384)
T cd00249 127 AAKVGGDPEARALAEETIDLLERRFWEDHPGAF 159 (384)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 533 22345567788899988874 467664
No 75
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=0.41 Score=45.37 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcc
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWY 84 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~ 84 (145)
++...|+++|..|....+.. ..+ ...+.++++||..+|.++|+|.
T Consensus 1000 ~stWLtafvlr~f~~a~~~i-~id----~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 1000 GSTWLTAFVLRVFSQAKEYI-FID----PNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred ccHHHHHHHHHHhhhccCce-Eec----HHHHHHHHHHHHHhhccCceEe
Confidence 55667999999988874321 111 3578999999999999999995
No 76
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=90.48 E-value=0.86 Score=39.52 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc---------CC-cchhhHHHHHHHHHHHc--
Q 046854 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR---------WG-VCFIYSTWWAISGLVAA-- 105 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~---------~g-~~~~~~T~~al~aL~~~-- 105 (145)
-.+++++.||..++. .+.+++.++||.+.|.+||.|... +. ....-.++..|.++...
T Consensus 298 RD~~~~a~Al~~~G~----------~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~ 367 (616)
T TIGR01577 298 RDASYIATALDRAGY----------HDRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYR 367 (616)
T ss_pred ccHHHHHHHHHHCCC----------HHHHHHHHHHHHHhhCcCCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHH
Confidence 346777777777763 235789999999999999997432 11 11111245555555322
Q ss_pred --CCCC---CCcHHHHHHHHHHHhcc
Q 046854 106 --EKTY---SNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 106 --g~~~---~~~~~v~~a~~~L~~~Q 126 (145)
+... ...+.++++++|+.+..
T Consensus 368 ~t~d~~~~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 368 LTNDRAFLEEIWESVQKAAQYLILFI 393 (616)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 2110 23567999999999965
No 77
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=89.83 E-value=4.1 Score=32.41 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCC--CCCCccccC---C----cchhhHHHHHHHHHHHcC
Q 046854 36 YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQK--PDGSWYGRW---G----VCFIYSTWWAISGLVAAE 106 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~--~dG~w~~~~---g----~~~~~~T~~al~aL~~~g 106 (145)
.+-.+++-|-+++.+.. . + .++..+.++++++||.+.-. ++|+|.... + ..+.|..++++.||+.+.
T Consensus 19 ~~~~q~R~~~~fa~a~~-~-g--~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~ 94 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYR-L-G--RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEAR 94 (346)
T ss_dssp EHHHHHHHHHHHHHHHH-T-T--SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHh-c-C--chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHH
Confidence 55678888888877665 2 2 23456789999999999885 458885421 1 246788899999998742
Q ss_pred CC--CCCcHHHHHHHHHHHhcc-cCC-CCcCCCCC
Q 046854 107 KT--YSNCLPIRKATDFLLNIQ-CGD-GGWGESYL 137 (145)
Q Consensus 107 ~~--~~~~~~v~~a~~~L~~~Q-~~d-Ggwg~~~~ 137 (145)
.. ++....+++++++|.+.- .++ |++.+...
T Consensus 95 ~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~ 129 (346)
T PF07221_consen 95 ATGDPEALELAEQTLEFLERRFWDPEGGGYRESFD 129 (346)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EET
T ss_pred HhCChhHHHHHHHHHHHHHHHhcccccCcceeccC
Confidence 22 234566788999998885 554 55554433
No 78
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=89.34 E-value=1.7 Score=36.99 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-----------cCCc--chhhHHHHHHHHHHHc
Q 046854 39 CTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-----------RWGV--CFIYSTWWAISGLVAA 105 (145)
Q Consensus 39 ~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-----------~~g~--~~~~~T~~al~aL~~~ 105 (145)
.+++-|.+++.+..... .+++...+++.|+.|.++|.+||-+.. .|.. ...|.....+.+|...
T Consensus 61 ~~g~wl~a~a~~~~~~~---D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTG---DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHH
Confidence 35677777776655432 245677899999999999999996533 2332 1245555556666543
Q ss_pred ----CCCCCCcHHHHHHHHHH
Q 046854 106 ----EKTYSNCLPIRKATDFL 122 (145)
Q Consensus 106 ----g~~~~~~~~v~~a~~~L 122 (145)
|.. +..+.+.|..+|+
T Consensus 138 y~~tG~~-~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 138 YEATGNE-RALDVATKLADWV 157 (520)
T ss_pred HHHHCcH-HHHHHHHHHHHHH
Confidence 433 4566788999999
No 79
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=87.92 E-value=2.3 Score=33.75 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCC-CCCccccC--------C-cchhhHHHHHHHHHHHcC
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKP-DGSWYGRW--------G-VCFIYSTWWAISGLVAAE 106 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~-dG~w~~~~--------g-~~~~~~T~~al~aL~~~g 106 (145)
+|..++++..|+.+++...+ ..-++.+++.+..+.....++ +|-|...+ . .+-.++.++++.+|..+-
T Consensus 123 iD~~~M~~p~l~~~~~~tgd--~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l 200 (336)
T PF07470_consen 123 IDGMYMNLPFLAWAGKLTGD--PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVL 200 (336)
T ss_dssp TTHHHHHHHHHHHHHHHHTG--HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHH
T ss_pred eccccccHHHHHHHHHHHCC--cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHH
Confidence 66777899999888765322 123456667777777777765 57774321 1 135678899999987542
Q ss_pred -CCC-------CCcHHHHHHHHHHHhcccCCCCcCCCCCCCC
Q 046854 107 -KTY-------SNCLPIRKATDFLLNIQCGDGGWGESYLSCP 140 (145)
Q Consensus 107 -~~~-------~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~ 140 (145)
..+ ......++.++.|...|.+||.|.......+
T Consensus 201 ~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~ 242 (336)
T PF07470_consen 201 EYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPD 242 (336)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTT
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCC
Confidence 111 1234566778889999999999986655544
No 80
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=9.8 Score=31.20 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCC-ccc----cCCc----chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC---
Q 046854 61 EVNNFIINAVKFIEDLQKPDGS-WYG----RWGV----CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG--- 128 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~-w~~----~~g~----~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~--- 128 (145)
+....|+++++=--..++|.|+ +.+ ..|. .+... -.|.++--+|...+++++..+..++|+|..||
T Consensus 261 ~L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~Gn~l~MDDaNv--PSLLa~PYLG~c~~dDpvY~~TRk~iLS~eNPYy~ 338 (434)
T COG3538 261 ELANEIQQGIEQFGKMDHPKGGEIYAYEVDGLGNQLFMDDANV--PSLLAAPYLGFCEKDDPVYQNTRKTILSSENPYYY 338 (434)
T ss_pred HHHHHHHHHHHHhceecCCCCCeeEEEEecCCCceeeccCCCc--hhhhhhhhhccccCCCHHHHHHHHHHHhcCCCcee
Confidence 3445567777776777778764 211 1121 11111 22556666787767899999999999999997
Q ss_pred CCCcCCCCCCCCCCc
Q 046854 129 DGGWGESYLSCPNKV 143 (145)
Q Consensus 129 dGgwg~~~~s~~~~~ 143 (145)
.|.-.....|.+++.
T Consensus 339 eG~~a~GiGSpHTp~ 353 (434)
T COG3538 339 EGKYASGIGSPHTPD 353 (434)
T ss_pred cceeeccCCCCCCCC
Confidence 888777777887764
No 81
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=77.24 E-value=20 Score=29.61 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=57.1
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHh-CCCCCCccc---cCCc-----chhhHHHHHHHHHHHc
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDL-QKPDGSWYG---RWGV-----CFIYSTWWAISGLVAA 105 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~-Q~~dG~w~~---~~g~-----~~~~~T~~al~aL~~~ 105 (145)
-.+-++.+=|-+.+..+... ++ .+..+++..+++|+.+. ..++|+|.. .-|. .+.|+.++|+.|++.+
T Consensus 52 rr~~~~~Rqvy~fA~A~~~g--~~-~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~ 128 (388)
T COG2942 52 RRLRVQARQVYCFAVAGLLG--WR-GPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHA 128 (388)
T ss_pred ceeeeehhHHHHHHHHHHhc--CC-ccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHH
Confidence 34445666666666665442 11 13567899999999965 567898853 1111 3688999999999875
Q ss_pred CC--CCCCcHHHHHHHHHHHhc
Q 046854 106 EK--TYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 106 g~--~~~~~~~v~~a~~~L~~~ 125 (145)
-. .++....+.++.+.|.+.
T Consensus 129 a~a~~~~a~~~~~~a~~~l~~~ 150 (388)
T COG2942 129 ATAGPPRADELLDEALDVLERR 150 (388)
T ss_pred HhcCChhHHHHHHHHHHHHHHH
Confidence 22 224456777888777665
No 82
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=72.23 E-value=47 Score=26.35 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.5
Q ss_pred CCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 110 SNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 110 ~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
.....++++++|+.+.+.++|-|...
T Consensus 185 ~~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 185 SLAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 45678999999999999889888543
No 83
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.95 E-value=47 Score=28.66 Aligned_cols=90 Identities=23% Similarity=0.201 Sum_probs=54.6
Q ss_pred cccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc---------cCCc----chhhHHHH
Q 046854 31 IIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG---------RWGV----CFIYSTWW 97 (145)
Q Consensus 31 ~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~---------~~g~----~~~~~T~~ 97 (145)
++..+++.....|+ |+.++.+.+ +++++.++++|+-+.+.|.+||-..+ +|+. ...|....
T Consensus 62 ~f~dsdlgkwlea~-A~~l~~~~d-----p~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~agh 135 (589)
T COG3533 62 MFWDSDLGKWLEAA-AYSLANKGD-----PELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGH 135 (589)
T ss_pred eeccccHHHHHHHH-HHHHhcCCC-----HHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHHHhHH
Confidence 45556666555543 334444322 35677889999999999999965432 3543 23555444
Q ss_pred HHHHHHH----cCCCCCCcHHHHHHHHHHHhccc
Q 046854 98 AISGLVA----AEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 98 al~aL~~----~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
-+.++.+ .|.. ..-..+.|-.+||.+.-.
T Consensus 136 Lieg~va~~qaTGkr-~lldV~~rlADhi~tvfg 168 (589)
T COG3533 136 LIEGGVAAHQATGKR-RLLDVVCRLADHIATVFG 168 (589)
T ss_pred HHhhhhHHHHhhCcc-hHHHHHHHHHHhhhhhcC
Confidence 4444443 3544 455677888888887643
No 84
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.49 E-value=77 Score=25.94 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 65 FIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 65 ~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
.-++.++||.+.....-.. .+......++..+|..+|.. -+...++.+++-+.+...-||=+++.
T Consensus 133 ~k~~l~~wL~~~~~~~~~~-----nNW~lF~v~v~~~L~~~G~~-~d~~~i~~~l~~~e~~Y~GdGWY~DG 197 (361)
T PF10022_consen 133 EKENLVDWLKQIRGIKPPD-----NNWLLFRVMVEAFLKKVGEE-YDEERIDYDLERIEEWYLGDGWYSDG 197 (361)
T ss_pred HHHHHHHHHHhcCcCCCcc-----chhHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHhccCCccccC
Confidence 3478999999765433221 12355678888999999988 46788999999999887666544433
No 85
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=1.1e+02 Score=27.30 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC--------Cc-chhhHHHHHHHHHHHcCCCCC
Q 046854 40 TASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW--------GV-CFIYSTWWAISGLVAAEKTYS 110 (145)
Q Consensus 40 T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~--------g~-~~~~~T~~al~aL~~~g~~~~ 110 (145)
.+..+.+|+..+.... .++.-++.+++.+||++....| ...-++ +. .+--....++.+|..++..
T Consensus 413 Nglmi~aLa~a~~~~~---d~~~l~~A~~~~~fi~~~l~~~-rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d-- 486 (667)
T COG1331 413 NGLMIAALAEAGRVLG---DPEYLEAAERAADFILDNLYVD-RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGD-- 486 (667)
T ss_pred HHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHhhccc-chheeeecCcccccccchhHHHHHHHHHHHHHhhCc--
Confidence 5777888888776532 2244567899999999999887 322211 11 1222345555556555543
Q ss_pred CcHHHHHHH----HHHHhcccCCCCcCCCCCCC
Q 046854 111 NCLPIRKAT----DFLLNIQCGDGGWGESYLSC 139 (145)
Q Consensus 111 ~~~~v~~a~----~~L~~~Q~~dGgwg~~~~s~ 139 (145)
...+++|+ +-|...+.+.|||-......
T Consensus 487 -~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~ 518 (667)
T COG1331 487 -LAYLEKAIELADEAIADFWDDEGGFYDTPSDS 518 (667)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCCcccCCCcc
Confidence 23333333 44555577778886554443
No 86
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=60.10 E-value=76 Score=25.17 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCccc
Q 046854 60 NEVNNFIINAVKFIEDLQKPDGSWYG 85 (145)
Q Consensus 60 ~~i~~~i~ka~~~L~~~Q~~dG~w~~ 85 (145)
+.+.+.++++++|+.+.+.++|.|+.
T Consensus 184 ~~~~~~i~~~i~~~~~~~~~~g~w~~ 209 (343)
T cd04794 184 PSLAPLIKRSLDYLLSLQFPSGNFPS 209 (343)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCCC
Confidence 35677899999999999988999865
No 87
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=56.99 E-value=32 Score=28.87 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCccccC-----C--cchhhHHHHHHHHHHHc---CCC---CCCcHHHHHHHHHHHhcccC
Q 046854 63 NNFIINAVKFIEDLQKPDGSWYGRW-----G--VCFIYSTWWAISGLVAA---EKT---YSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 63 ~~~i~ka~~~L~~~Q~~dG~w~~~~-----g--~~~~~~T~~al~aL~~~---g~~---~~~~~~v~~a~~~L~~~Q~~ 128 (145)
.+.++|.++.+...|.++|.++... . ....+..++.+...... |-. .+..+.+++.++|+.+..++
T Consensus 168 ~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~~~ 246 (509)
T PF05592_consen 168 AALYRKWLRDFADSQRPDGLLPSVAPSYGGGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRVDD 246 (509)
T ss_dssp HHHHHHHHHHHHGGTTTSTT-SSBSS---SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHHHhhcccCCceEEecccCCCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3578999999999999999997611 1 12233333332222211 321 12467899999999998877
No 88
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=55.56 E-value=20 Score=18.66 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLN 124 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~ 124 (145)
-..++.||...+.+ +.+|++||.+
T Consensus 15 ~~~~~~AL~~~~~d------~~~A~~~L~~ 38 (38)
T cd00194 15 REEARKALRATNNN------VERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHhC
Confidence 34567777766644 7888998863
No 89
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=53.54 E-value=23 Score=30.21 Aligned_cols=28 Identities=21% Similarity=-0.016 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 110 SNCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 110 ~~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
+....+++.|+.|+++|.+||=.+....
T Consensus 80 ~l~~~~d~~V~~l~~~Q~~dGYl~~~~~ 107 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQPDGYLGTYPE 107 (520)
T ss_pred HHHHHHHHHHHHHHHhccCCceeccccc
Confidence 4567788999999999999995554433
No 90
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=53.52 E-value=6.6 Score=14.04 Aligned_cols=6 Identities=67% Similarity=1.985 Sum_probs=4.1
Q ss_pred CCCcCC
Q 046854 129 DGGWGE 134 (145)
Q Consensus 129 dGgwg~ 134 (145)
-|+||.
T Consensus 3 gG~Wgq 8 (8)
T PF03991_consen 3 GGGWGQ 8 (8)
T ss_pred CCcCCC
Confidence 478874
No 91
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=51.14 E-value=17 Score=30.38 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCCCccccC-------------CcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc--ccCC
Q 046854 65 FIINAVKFIEDLQKPDGSWYGRW-------------GVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNI--QCGD 129 (145)
Q Consensus 65 ~i~ka~~~L~~~Q~~dG~w~~~~-------------g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~--Q~~d 129 (145)
+.-.|.+||...|++.|||.... |-....+.+.||..|..+-....+..-++.|..-|.-- -..|
T Consensus 381 aFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~pyk~~S~d 460 (594)
T KOG3760|consen 381 AFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPYKINSSD 460 (594)
T ss_pred HHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCeEeecCC
Confidence 46689999999999999996421 11112234455666655432212344455555444322 2457
Q ss_pred CC
Q 046854 130 GG 131 (145)
Q Consensus 130 Gg 131 (145)
||
T Consensus 461 gG 462 (594)
T KOG3760|consen 461 GG 462 (594)
T ss_pred Cc
Confidence 76
No 92
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=50.95 E-value=34 Score=17.91 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHH
Q 046854 97 WAISGLVAAEKTYSNCLPIRKATDFL 122 (145)
Q Consensus 97 ~al~aL~~~g~~~~~~~~v~~a~~~L 122 (145)
.|..||...+.. +++|++||
T Consensus 18 ~~~~AL~~~~~n------ve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGN------VERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTS------HHHHHHHH
T ss_pred HHHHHHHHcCCC------HHHHHHhC
Confidence 566777766644 77888886
No 93
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=49.35 E-value=36 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCcc--ccCCcchhhHHHHHHHHHHHcCCC
Q 046854 66 IINAVKFIEDLQKPDGSWY--GRWGVCFIYSTWWAISGLVAAEKT 108 (145)
Q Consensus 66 i~ka~~~L~~~Q~~dG~w~--~~~g~~~~~~T~~al~aL~~~g~~ 108 (145)
++++++|..+.+..= +.+ .++|....-..+.+..||...|..
T Consensus 2 ie~~I~w~~~r~~~v-~YSm~~R~G~~s~DCSs~V~~ALr~aG~~ 45 (145)
T PF05382_consen 2 IEKAINWMEARKGKV-TYSMDSRNGPDSYDCSSFVYQALRAAGFK 45 (145)
T ss_pred HHHHHHHHHHhcCCc-eEhhhhcCCCCcCchHHHHHHHHHHcCCC
Confidence 588999998887541 121 266665456788889999999986
No 94
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=46.73 E-value=38 Score=27.88 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCc
Q 046854 61 EVNNFIINAVKFIEDLQKPDGSW 83 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~w 83 (145)
.+.+.++=+++||+++|.++|.|
T Consensus 95 dllde~kwg~D~llkm~~~~~~~ 117 (444)
T PF00759_consen 95 DLLDEAKWGLDWLLKMQDSDGTF 117 (444)
T ss_dssp HHHHHHHHHHHHHHHTBSCTTEE
T ss_pred HHHHHHHHHHHHHHhccCCCCce
Confidence 45566788999999999996655
No 95
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=46.05 E-value=28 Score=18.00 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHH
Q 046854 97 WAISGLVAAEKTYSNCLPIRKATDFL 122 (145)
Q Consensus 97 ~al~aL~~~g~~~~~~~~v~~a~~~L 122 (145)
.|+.||...+.+ +.+|++||
T Consensus 17 ~a~~aL~~~~~d------~~~A~~~L 36 (37)
T smart00165 17 EALKALRAANGN------VERAAEYL 36 (37)
T ss_pred HHHHHHHHhCCC------HHHHHHHH
Confidence 556667666543 67788887
No 96
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=1.3e+02 Score=26.72 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhCCC-CCCccc
Q 046854 64 NFIINAVKFIEDLQKP-DGSWYG 85 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~-dG~w~~ 85 (145)
..+.+++.-|.+.... .|||.+
T Consensus 183 ~~l~~~~~~l~~~~D~~~GGfg~ 205 (667)
T COG1331 183 EVLDRAAEALARSFDREYGGFGS 205 (667)
T ss_pred HHHHHHHHHHHHhcchhhCCcCC
Confidence 3567888888888865 488854
No 97
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=41.31 E-value=41 Score=21.42 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 112 CLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
...++.|++||++..+..-||-+.-.
T Consensus 55 teIiEnAVefiLrSMtR~tgF~E~~d 80 (88)
T PF15144_consen 55 TEIIENAVEFILRSMTRSTGFMEFED 80 (88)
T ss_pred HHHHHHHHHHHHHHhhcccCceecCC
Confidence 46799999999999988888865443
No 98
>PLN02909 Endoglucanase
Probab=39.00 E-value=41 Score=28.69 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=18.3
Q ss_pred CcHHHHHHHHHHHhcccCCCCcC
Q 046854 111 NCLPIRKATDFLLNIQCGDGGWG 133 (145)
Q Consensus 111 ~~~~v~~a~~~L~~~Q~~dGgwg 133 (145)
....++=.++||+++|..+|++-
T Consensus 122 ~ldeikw~~D~llk~~~~~~~~y 144 (486)
T PLN02909 122 VRAAIRWGTDYFLKAASRKNRLY 144 (486)
T ss_pred HHHHHHHHHHHHHHhccCCCeEE
Confidence 34567779999999999888764
No 99
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=37.02 E-value=33 Score=28.23 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHhcccCCCCc
Q 046854 112 CLPIRKATDFLLNIQCGDGGW 132 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGgw 132 (145)
...++=+++||+++|.++|.+
T Consensus 97 lde~kwg~D~llkm~~~~~~~ 117 (444)
T PF00759_consen 97 LDEAKWGLDWLLKMQDSDGTF 117 (444)
T ss_dssp HHHHHHHHHHHHHTBSCTTEE
T ss_pred HHHHHHHHHHHHhccCCCCce
Confidence 445667899999999996654
No 100
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=36.84 E-value=67 Score=28.22 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHh-CCCCCCcccc---------CCc-----chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 64 NFIINAVKFIEDL-QKPDGSWYGR---------WGV-----CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 64 ~~i~ka~~~L~~~-Q~~dG~w~~~---------~g~-----~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
.++++..--|+.+ +++-|+.-+. .+. +-.+..+.++.||..+|.. ....+.++|+.+.|++
T Consensus 244 ~~~~rS~l~l~~~~~~~~G~ivAs~t~~l~~~~~g~~dY~y~W~RD~~~~~~AL~~~G~~----~~a~~~f~~l~~~~~~ 319 (612)
T COG3387 244 SALYRSALVLKALNYNPTGAIVASPTTSLPELIGGTRDYRYVWPRDASYAALALLAIGYK----KEALRFFEFLPDVQTP 319 (612)
T ss_pred HHHHHHHHHHHHcccCCCCcEEEcCCCCccccCCCCCCceEEccCcHHHHHHHHHHcCCH----HHHHHHHHHHHHhhCC
Confidence 3555555555544 4444665321 122 3355788999999999976 6678899999999999
Q ss_pred CCCc
Q 046854 129 DGGW 132 (145)
Q Consensus 129 dGgw 132 (145)
+|-|
T Consensus 320 ~~~~ 323 (612)
T COG3387 320 NGKL 323 (612)
T ss_pred CCce
Confidence 8754
No 101
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=34.54 E-value=68 Score=22.28 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=26.2
Q ss_pred Cccc----cCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 82 SWYG----RWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 82 ~w~~----~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
||.+ .|......+--.+|.+|...-..-...+...|+.+||..+
T Consensus 74 GWkG~GPVPw~HePNrGfLRal~aLa~AA~~IGE~dE~~Rc~~~L~Ds 121 (129)
T PF11349_consen 74 GWKGHGPVPWSHEPNRGFLRALAALARAAQAIGETDEYDRCRQFLRDS 121 (129)
T ss_pred CCCCCCCCCCccCCccHHHHHHHHHHHHHHHhCChhHHHHHHHHHHhC
Confidence 5755 4655455566666666654311101246788999999876
No 102
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=34.14 E-value=2.4e+02 Score=22.37 Aligned_cols=96 Identities=13% Similarity=-0.021 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCC-CCCCcccc----CCc----chhhHHHHHHHHHHHc
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQK-PDGSWYGR----WGV----CFIYSTWWAISGLVAA 105 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~-~dG~w~~~----~g~----~~~~~T~~al~aL~~~ 105 (145)
.++..-+++|.+|+.+..... .++..+.+++++++|.+... ++|++... +.. ........++..|..+
T Consensus 112 ~~l~~~a~~l~ala~~~~at~---d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~ 188 (384)
T cd00249 112 KDLYSHAFALLAAAQAAKVGG---DPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEA 188 (384)
T ss_pred cchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Confidence 456778889999988776532 23455678899999998875 45654311 111 1111123344444433
Q ss_pred CCCCCCcHHHHHHHHHHHhc--ccCCCCcC
Q 046854 106 EKTYSNCLPIRKATDFLLNI--QCGDGGWG 133 (145)
Q Consensus 106 g~~~~~~~~v~~a~~~L~~~--Q~~dGgwg 133 (145)
-.+.......++.++.+... +.++|++-
T Consensus 189 tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~ 218 (384)
T cd00249 189 TGEQKYLDRADEIADLILDRFIDAESGVVR 218 (384)
T ss_pred hCCHHHHHHHHHHHHHHHHHhcCcccCeEE
Confidence 21212234455566666654 24467764
No 103
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=31.35 E-value=1.4e+02 Score=21.47 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+.+...++|++.-+.-+|.=...+.....+ .. -.++.++.-..||+..-...+|||..
T Consensus 96 d~I~~Lv~~iknP~s~kG~~~~~~~~mp~~------------~~--LsdeEL~aIAaYLl~qa~~~~~Wg~~ 153 (155)
T TIGR03046 96 DTIQSLVAYQRDPMSYDGSEESYGCRPVPE------------DW--MDDEEVENLAAFILRAAQKAPGWGVE 153 (155)
T ss_pred HHHHHHHHHhhCCcccCcccccccccCCcc------------cC--CCHHHHHHHHHHHHHhhhhcCCCCCC
Confidence 356778888888777666321111111000 11 24678999999999988888999853
No 104
>PLN02345 endoglucanase
Probab=29.81 E-value=65 Score=27.36 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHhcccCCCCcC
Q 046854 112 CLPIRKATDFLLNIQCGDGGWG 133 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGgwg 133 (145)
...++=.++||+++|..+|++-
T Consensus 85 ldelkw~~Dyllk~~~~~~~~y 106 (469)
T PLN02345 85 KDSLKWITDYLINAHPSENVLY 106 (469)
T ss_pred HHHHhHHHHHHHHhcCCCCeEE
Confidence 3457779999999999888764
No 105
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=29.21 E-value=1.9e+02 Score=25.53 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCC
Q 046854 92 IYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCP 140 (145)
Q Consensus 92 ~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~ 140 (145)
...|.+-+..+..+|.. ..+++.++||+++++++|-..++.....
T Consensus 537 ~i~t~Wl~~~~~~~g~~----~~a~~ll~~l~~~a~~~gll~EQv~~~~ 581 (612)
T COG3387 537 IITTLWLSEYYLALGRL----DEAKKLLEWLLAFASPLGLLPEQVDDGS 581 (612)
T ss_pred eeehhHHHHHHHHccch----HHHHHHHHHHHHhcCCCCCcchhhcCCC
Confidence 34578888888888876 4677889999999999999987765543
No 106
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.05 E-value=3.2e+02 Score=22.34 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHhC---CCCCCccccCCcchhh--HHHHHHHHHHHcCCCC--C-CcHHHHHH----HHHHHhc
Q 046854 61 EVNNFIINAVKFIEDLQ---KPDGSWYGRWGVCFIY--STWWAISGLVAAEKTY--S-NCLPIRKA----TDFLLNI 125 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q---~~dG~w~~~~g~~~~~--~T~~al~aL~~~g~~~--~-~~~~v~~a----~~~L~~~ 125 (145)
..++..+|+.+|+.... .+||.+. .+|.+-+| +....+.+++..+..| . ....++++ ++|.++.
T Consensus 228 ~~~~~~~Ra~~fa~~~~~~f~~dG~~~-~~GRSltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l~~~lr~~~~~ 303 (361)
T PF10022_consen 228 RAARYRQRAQRFAEDYERMFSPDGAAP-PFGRSLTYRFAAFAFLAAAALAGVLPEPLISPGQVRRALSRVLRWWLEQ 303 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcC-CccccHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 35567788888877765 5899874 57776555 4444455555556621 2 33445544 4455444
No 107
>PLN02266 endoglucanase
Probab=28.62 E-value=82 Score=27.10 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHhcccCCCCcC
Q 046854 112 CLPIRKATDFLLNIQCGDGGWG 133 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGgwg 133 (145)
...++=.++||+++|..+|++-
T Consensus 133 Ldelkw~~D~llk~~~~~~~vy 154 (510)
T PLN02266 133 KDAIRWATDYLLKATAHPDTIY 154 (510)
T ss_pred HHHHHHHHHHHHHhccCCCeEE
Confidence 4567778999999998888764
No 108
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=28.17 E-value=1.1e+02 Score=16.87 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLN 124 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~ 124 (145)
.-++.||..+|.. ...+++++.-+..
T Consensus 4 ~d~~~AL~~LGy~---~~e~~~av~~~~~ 29 (47)
T PF07499_consen 4 EDALEALISLGYS---KAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHTTS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHhhc
Confidence 3578899999987 4667777777765
No 109
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=28.03 E-value=8.9 Score=19.27 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=7.1
Q ss_pred HHHhcccCCCCcC
Q 046854 121 FLLNIQCGDGGWG 133 (145)
Q Consensus 121 ~L~~~Q~~dGgwg 133 (145)
+|-..|.+||.|.
T Consensus 4 ~I~~s~RpDGt~R 16 (27)
T PF09282_consen 4 IIPASQRPDGTWR 16 (27)
T ss_dssp EE--EE-TTS-EE
T ss_pred CcCcccCCCCCcc
Confidence 4567899999996
No 110
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=26.08 E-value=2.2e+02 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCccccC
Q 046854 60 NEVNNFIINAVKFIEDLQKPDGSWYGRW 87 (145)
Q Consensus 60 ~~i~~~i~ka~~~L~~~Q~~dG~w~~~~ 87 (145)
++.++.++|.+..|.++..-+|..+.+|
T Consensus 55 ~e~~~Rl~~~L~tL~~lpl~~g~lPn~~ 82 (367)
T PF11329_consen 55 EEFDQRLEKTLATLEKLPLFRGHLPNKW 82 (367)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcCccce
Confidence 4667789999999999998888875533
No 111
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=26.01 E-value=3.1e+02 Score=21.09 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCccccC--------Ccc-hhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc-CCC
Q 046854 61 EVNNFIINAVKFIEDLQKPDGSWYGRW--------GVC-FIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQC-GDG 130 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~w~~~~--------g~~-~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~-~dG 130 (145)
.+.+.+++++++|.+...++..+. .| |-. ..-+.+.++..|...-.++.....+++++++++++.. .++
T Consensus 102 ~~l~~a~~~~~~l~~~~~~~~~~~-~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~ 180 (321)
T cd04791 102 ALLEAAAKIAELLAEALERGDPAL-LWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDG 180 (321)
T ss_pred HHHHHHHHHHHHHHHHhhcccccc-ccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 456678899999887654432221 11 111 1113444444444332222345567788888877754 357
Q ss_pred CcC
Q 046854 131 GWG 133 (145)
Q Consensus 131 gwg 133 (145)
+|.
T Consensus 181 g~~ 183 (321)
T cd04791 181 GLL 183 (321)
T ss_pred Cce
Confidence 774
No 112
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=25.69 E-value=43 Score=28.12 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcccCCCCcCC
Q 046854 113 LPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 113 ~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
.+.-.|.+||...|++-|||.-
T Consensus 380 aaFyaAadWlV~NQd~kGGW~~ 401 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWSV 401 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCcc
Confidence 3455789999999999999974
No 113
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=25.43 E-value=1.5e+02 Score=24.23 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCC
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGS 82 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~ 82 (145)
+.+.+++.|+.+-+++.....+.-..+..++++||++=|+.+..++|-
T Consensus 262 sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g~ 309 (357)
T COG4225 262 SYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEGE 309 (357)
T ss_pred CchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcccccc
Confidence 555666666666666542222222234457899999999999887654
No 114
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=24.05 E-value=3.2e+02 Score=20.59 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=26.7
Q ss_pred HhCCCCCCcccc--CCcchhhHHHHHHHHHHHc-------CCC----CCCcHHHHHHHHHHHhccc
Q 046854 75 DLQKPDGSWYGR--WGVCFIYSTWWAISGLVAA-------EKT----YSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 75 ~~Q~~dG~w~~~--~g~~~~~~T~~al~aL~~~-------g~~----~~~~~~v~~a~~~L~~~Q~ 127 (145)
.+..+||+.+.. .+......+.++|.+|..+ |.+ ......+.++++|+..--.
T Consensus 202 ~qi~~dG~~p~e~~R~~~~~~Y~~~~L~~l~~~a~~a~~~G~dl~~y~~~~~~l~~a~~~~~~~~~ 267 (272)
T PF05426_consen 202 KQIDPDGSQPDESGRGERSQHYHNFALQALLTLAELARNQGVDLYSYAPNGNRLHKAVEYLAPYIL 267 (272)
T ss_dssp CCC-TTS-BCCHHCSGCCHHHHHHHHHHHHHHHHHHHHCTT--GCC--CTTBSHHHHHHHHHHHCC
T ss_pred hccccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHhCCCcccCCCCChHHHHHHHHHHHHhc
Confidence 334579976541 1122333344555555332 332 1245678999999987654
No 115
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=24.01 E-value=2.1e+02 Score=23.76 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhCCC---CCCccccCCc-----chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 63 NNFIINAVKFIEDLQKP---DGSWYGRWGV-----CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 63 ~~~i~ka~~~L~~~Q~~---dG~w~~~~g~-----~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
+++-.+.-++|++..|| .|.....-|. .++...+.++++|.+ .+...++..+++|+.+
T Consensus 319 DpvY~~TRk~iLS~eNPYy~eG~~a~GiGSpHTp~~yvWpiaLaiqgLTa-----~D~~ek~~iL~~L~~t 384 (434)
T COG3538 319 DPVYQNTRKTILSSENPYYYEGKYASGIGSPHTPDHYVWPIALAIQGLTA-----NDDSEKKEILDMLKAT 384 (434)
T ss_pred CHHHHHHHHHHHhcCCCceecceeeccCCCCCCCCcccchHHHHHhhccc-----CChHHHHHHHHHHHhc
Confidence 34567778899999998 5766543443 345556666666543 3456688889999765
No 116
>PRK03430 hypothetical protein; Validated
Probab=20.92 E-value=1.1e+02 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=20.4
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 046854 99 ISGLVAAEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 99 l~aL~~~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
..-|.++|.. ...|.||++||....
T Consensus 27 ~~~L~~aGF~---~~eI~~AL~WLe~L~ 51 (157)
T PRK03430 27 EDDLTDAGFH---REDIYNALLWLEKLA 51 (157)
T ss_pred HHHHHHcCCC---HHHHHHHHHHHHHHH
Confidence 3567888987 688999999998774
No 117
>PLN02171 endoglucanase
Probab=20.84 E-value=1.4e+02 Score=26.48 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=15.4
Q ss_pred cHHHHHHHHHHHhcccCCCC
Q 046854 112 CLPIRKATDFLLNIQCGDGG 131 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGg 131 (145)
...++=.++||+++|.+++.
T Consensus 119 Ldeikw~~Dyllk~~~~~~~ 138 (629)
T PLN02171 119 MDAVKWGTDYFIKAHPEPNV 138 (629)
T ss_pred HHHHHHHHHHHHHhccCCCe
Confidence 45677789999999976553
No 118
>PRK13621 psbV cytochrome c-550; Provisional
Probab=20.24 E-value=3.1e+02 Score=20.09 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
+.+...++|++.-+.-+|.=...+..... ... -..+.++.-..||+..-...++||...
T Consensus 107 d~I~~LV~~iknPms~kg~~~~~~~~mps------------~~~--LSdeEL~aIAaYLL~qA~~~~~Wg~~~ 165 (170)
T PRK13621 107 DNIAALVAYQRDPMSYDGSEESYGCRQVP------------EDW--MTDEELQNLAAFILRAAQKAPGWGTEA 165 (170)
T ss_pred HHHHHHHHHhhCCCCCCcccccccccCCc------------cCC--CCHHHHHHHHHHHHhhhhhccCCCCcc
Confidence 45777888888887766632111111100 011 246789999999999877789998543
No 119
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=20.04 E-value=2e+02 Score=18.88 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHhCCCCCCccc--cCCcchhhHHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHhcc
Q 046854 62 VNNFIINAVKFIEDLQKPDGSWYG--RWGVCFIYSTWWAISGLVA-AEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 62 i~~~i~ka~~~L~~~Q~~dG~w~~--~~g~~~~~~T~~al~aL~~-~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
+.+.+.+++++|.....++|..-- ..|.+ ++.+.++.-|.. .+.+ .++|++++++.+
T Consensus 55 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~--RS~~v~~ayLm~~~~~~------~~~A~~~v~~~r 114 (133)
T PF00782_consen 55 ILEHLDQAVEFIENAISEGGKVLVHCKAGLS--RSGAVAAAYLMKKNGMS------LEEAIEYVRSRR 114 (133)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEEEESSSSS--HHHHHHHHHHHHHHTSS------HHHHHHHHHHHS
T ss_pred hHHHHHHHHHhhhhhhcccceeEEEeCCCcc--cchHHHHHHHHHHcCCC------HHHHHHHHHHHC
Confidence 345678889999887666655421 23432 333333332333 3444 678888888775
Done!