Query 046854
Match_columns 145
No_of_seqs 158 out of 1266
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 99.9 3.1E-27 1.1E-31 203.0 13.8 144 1-144 495-641 (732)
2 2sqc_A Squalene-hopene cyclase 99.9 4.2E-23 1.4E-27 175.0 13.8 132 1-144 412-545 (631)
3 1n4q_B Geranyltransferase type 99.9 1.6E-23 5.4E-28 168.1 8.8 124 2-138 91-216 (377)
4 3q7a_B Farnesyltransferase bet 99.8 5.4E-21 1.9E-25 157.6 11.6 112 21-134 122-236 (520)
5 2h6f_B Protein farnesyltransfe 99.8 1.4E-21 4.8E-26 159.3 6.7 109 23-138 136-245 (437)
6 3dss_B Geranylgeranyl transfer 99.8 2.1E-19 7.3E-24 142.0 8.7 108 22-139 80-188 (331)
7 3dss_B Geranylgeranyl transfer 99.8 2E-18 6.7E-23 136.5 8.5 112 23-144 129-241 (331)
8 1r76_A Pectate lyase; A-helica 99.7 1.7E-18 5.7E-23 139.1 6.4 119 1-133 189-334 (408)
9 2h6f_B Protein farnesyltransfe 99.7 2.1E-17 7.2E-22 134.8 6.2 96 36-138 100-197 (437)
10 1gxm_A Pectate lyase; mechanis 99.7 1.5E-17 5.1E-22 130.4 2.9 113 1-128 111-252 (332)
11 2sqc_A Squalene-hopene cyclase 99.6 2E-15 7E-20 127.9 11.4 96 34-138 491-597 (631)
12 1w6k_A Lanosterol synthase; cy 99.6 5.1E-15 1.7E-19 127.3 9.5 103 34-136 451-581 (732)
13 3dra_B Geranylgeranyltransfera 99.5 2.1E-14 7.1E-19 115.4 8.7 99 33-137 90-215 (390)
14 1qqf_A Protein (complement C3D 99.5 1.3E-13 4.5E-18 105.8 10.6 90 33-128 63-173 (277)
15 2wy7_A Complement C3D fragment 99.5 1.9E-13 6.7E-18 106.5 10.6 89 34-128 80-189 (310)
16 1gxm_A Pectate lyase; mechanis 99.4 2.3E-13 8E-18 106.7 7.8 121 1-132 45-188 (332)
17 3q7a_B Farnesyltransferase bet 99.4 3.7E-13 1.3E-17 111.1 8.7 112 23-142 182-324 (520)
18 1n4q_B Geranyltransferase type 99.4 6.4E-13 2.2E-17 106.5 9.7 119 16-144 149-272 (377)
19 1r76_A Pectate lyase; A-helica 99.3 4.8E-12 1.6E-16 101.7 10.4 102 32-133 143-266 (408)
20 1hzf_A Complement factor C4A; 99.3 4.6E-12 1.6E-16 101.0 9.4 86 35-125 118-226 (367)
21 2bb6_A TCII, TC II, transcobal 99.3 1.8E-11 6.1E-16 98.8 9.3 94 33-133 174-269 (414)
22 2pmv_A Gastric intrinsic facto 99.2 3.7E-11 1.3E-15 96.5 8.9 94 33-133 148-245 (399)
23 1hzf_A Complement factor C4A; 99.2 7E-11 2.4E-15 94.2 9.4 80 60-140 87-169 (367)
24 3dra_B Geranylgeranyltransfera 99.0 6E-10 2.1E-14 89.5 8.4 91 32-127 154-252 (390)
25 1qqf_A Protein (complement C3D 99.0 3.2E-09 1.1E-13 81.2 11.9 77 60-137 34-114 (277)
26 4acq_A Alpha-2-macroglobulin; 99.0 1.4E-09 4.7E-14 99.5 11.1 102 1-125 997-1108(1451)
27 2pn5_A TEP1R, thioester-contai 99.0 7E-10 2.4E-14 100.5 8.9 97 33-134 897-1006(1325)
28 2wy7_A Complement C3D fragment 99.0 6.3E-09 2.1E-13 80.9 11.7 77 60-137 50-130 (310)
29 2hr0_B Complement C3 alpha' ch 98.9 5.3E-09 1.8E-13 91.9 10.7 90 34-128 325-434 (915)
30 4acq_A Alpha-2-macroglobulin; 98.5 3.6E-07 1.2E-11 83.7 8.7 74 62-136 981-1061(1451)
31 2pn5_A TEP1R, thioester-contai 98.4 1.1E-06 3.7E-11 79.8 8.7 74 61-135 869-946 (1325)
32 2hr0_B Complement C3 alpha' ch 98.3 3.7E-06 1.3E-10 73.9 11.5 72 63-135 298-373 (915)
33 2bb6_A TCII, TC II, transcobal 98.1 9.4E-06 3.2E-10 65.5 8.6 86 38-136 137-229 (414)
34 4fxk_B Complement C4-A alpha c 98.1 4.2E-05 1.4E-09 65.9 13.1 75 62-137 366-443 (767)
35 4fxk_B Complement C4-A alpha c 98.0 3E-05 1E-09 66.8 10.5 86 35-125 395-503 (767)
36 2b39_A C3; thioester, immune d 97.9 7.3E-05 2.5E-09 69.4 11.5 88 34-126 1072-1179(1661)
37 3cu7_A Complement C5; Mg domai 97.9 5.8E-05 2E-09 70.1 10.4 87 34-125 1073-1178(1676)
38 3prx_B Cobra venom factor; imm 97.6 7.1E-06 2.4E-10 76.0 0.0 86 35-125 1057-1162(1642)
39 2b39_A C3; thioester, immune d 97.6 0.00069 2.4E-08 62.9 12.7 73 62-135 1044-1120(1661)
40 2pmv_A Gastric intrinsic facto 97.6 8.1E-05 2.8E-09 59.8 5.2 79 39-134 116-204 (399)
41 3cu7_A Complement C5; Mg domai 97.4 0.00067 2.3E-08 63.1 9.8 72 64-136 1047-1122(1676)
42 3prx_B Cobra venom factor; imm 97.4 2.5E-05 8.4E-10 72.5 0.0 73 63-136 1029-1106(1642)
43 3pya_A ENT-copalyl diphosphate 97.3 0.00046 1.6E-08 59.3 7.0 79 34-126 31-112 (727)
44 3p5p_A Taxadiene synthase; cla 97.3 0.00049 1.7E-08 59.6 6.8 82 34-126 30-115 (764)
45 3sdr_A Alpha-bisabolene syntha 97.3 0.00051 1.7E-08 59.9 6.8 58 66-126 103-163 (817)
46 3s9v_A Abietadiene synthase, c 97.3 0.00043 1.5E-08 60.1 6.2 59 65-126 75-136 (785)
47 3pmm_A Putative cytoplasmic pr 96.4 0.039 1.3E-06 43.9 10.9 98 39-136 234-343 (382)
48 3k11_A Putative glycosyl hydro 96.1 0.048 1.6E-06 44.4 10.1 97 39-135 267-374 (445)
49 3s9v_A Abietadiene synthase, c 96.0 0.0037 1.3E-07 54.3 3.1 42 90-135 54-96 (785)
50 3sdr_A Alpha-bisabolene syntha 95.9 0.0042 1.4E-07 54.1 3.1 64 66-135 56-123 (817)
51 3p5p_A Taxadiene synthase; cla 95.7 0.0046 1.6E-07 53.5 2.5 44 90-135 31-75 (764)
52 1nc5_A Hypothetical protein YT 95.2 0.24 8.1E-06 39.0 10.8 93 39-131 214-323 (373)
53 3pya_A ENT-copalyl diphosphate 95.0 0.029 9.9E-07 48.3 5.3 41 90-135 32-72 (727)
54 2gz6_A N-acetyl-D-glucosamine 93.4 0.42 1.4E-05 37.2 8.5 94 36-132 51-158 (388)
55 3gt5_A N-acetylglucosamine 2-e 91.1 1.9 6.6E-05 33.9 9.9 94 37-133 51-157 (402)
56 3k11_A Putative glycosyl hydro 90.6 1.8 6.1E-05 35.1 9.3 101 37-137 201-318 (445)
57 1fp3_A N-acyl-D-glucosamine 2- 90.2 1.8 6.3E-05 33.8 9.0 95 37-132 55-166 (402)
58 1wgn_A UBAP1, ubiquitin associ 89.9 0.39 1.3E-05 28.3 3.5 30 95-130 33-62 (63)
59 3pmm_A Putative cytoplasmic pr 89.6 2.5 8.7E-05 33.3 9.3 99 37-137 169-287 (382)
60 1ulv_A Glucodextranase; GH fam 89.6 1.8 6.3E-05 38.6 9.2 72 61-136 281-372 (1020)
61 2dna_A Unnamed protein product 88.9 0.56 1.9E-05 28.1 3.8 28 97-130 36-63 (67)
62 1lf6_A Glucoamylase; (alpha/al 88.9 0.81 2.8E-05 38.9 6.3 69 62-134 294-380 (684)
63 1lf6_A Glucoamylase; (alpha/al 88.6 0.72 2.5E-05 39.2 5.7 77 39-126 344-429 (684)
64 1nc5_A Hypothetical protein YT 86.2 4.5 0.00016 31.5 8.8 96 37-134 142-263 (373)
65 4ae4_A Ubiquitin-associated pr 85.6 0.48 1.7E-05 31.5 2.4 61 66-126 36-115 (118)
66 1vej_A Riken cDNA 4931431F19; 83.7 1.5 5E-05 26.7 3.8 29 96-130 45-73 (74)
67 1ulv_A Glucodextranase; GH fam 81.9 4.4 0.00015 36.2 7.6 79 38-126 332-421 (1020)
68 1vg5_A RSGI RUH-014, rhomboid 81.3 1.9 6.6E-05 26.1 3.7 29 95-129 43-71 (73)
69 1wji_A Tudor domain containing 80.2 2.2 7.5E-05 25.0 3.6 30 95-130 23-52 (63)
70 2dah_A Ubiquilin-3; UBA domain 80.2 2.2 7.6E-05 24.2 3.5 26 97-128 26-51 (54)
71 2cpw_A CBL-interacting protein 79.5 2.6 9E-05 24.7 3.8 29 95-128 33-61 (64)
72 4fnv_A Heparinase III protein, 79.0 29 0.001 29.6 12.4 96 40-140 262-378 (702)
73 2knz_A Ubiquilin-4; cytoplasm, 78.9 2.1 7.2E-05 24.1 3.1 26 95-126 26-51 (53)
74 2vn4_A Glucoamylase; hydrolase 78.9 7 0.00024 32.8 7.5 86 39-134 54-180 (599)
75 1wiv_A UBP14, ubiquitin-specif 78.8 3.2 0.00011 25.0 4.1 28 95-128 43-70 (73)
76 2gz6_A N-acetyl-D-glucosamine 77.7 4.1 0.00014 31.4 5.5 70 66-135 17-100 (388)
77 3e6u_A LANC-like protein 1; al 76.4 8.8 0.0003 30.4 7.2 26 60-85 250-275 (411)
78 3h7l_A Endoglucanase; dehydrog 74.2 13 0.00045 31.2 7.9 25 61-85 191-215 (586)
79 2ekk_A UBA domain from E3 ubiq 73.6 4.1 0.00014 22.1 3.3 24 95-125 23-46 (47)
80 2bwb_A Ubiquitin-like protein 70.9 3.6 0.00012 22.4 2.6 23 96-124 23-45 (46)
81 1veg_A NEDD8 ultimate buster-1 70.6 4.2 0.00014 25.3 3.1 27 95-127 43-69 (83)
82 1wr1_B Ubiquitin-like protein 69.8 4.6 0.00016 23.2 3.0 24 96-125 33-56 (58)
83 3gt5_A N-acetylglucosamine 2-e 69.6 8 0.00027 30.3 5.4 74 63-136 12-100 (402)
84 1fp3_A N-acyl-D-glucosamine 2- 69.0 13 0.00044 28.9 6.5 74 62-135 15-107 (402)
85 2dak_A Ubiquitin carboxyl-term 68.1 4.3 0.00015 23.5 2.7 28 95-128 23-50 (63)
86 2zbl_A Putative isomerase; N-a 68.1 30 0.001 27.1 8.5 97 35-136 48-158 (421)
87 2dai_A Ubadc1, ubiquitin assoc 67.7 8.1 0.00028 23.8 4.1 28 95-128 43-70 (83)
88 2g3q_A Protein YBL047C; endocy 67.0 6.3 0.00022 20.8 3.1 24 96-125 19-42 (43)
89 2crn_A Ubash3A protein; compac 66.6 6.7 0.00023 22.9 3.4 28 95-127 23-50 (64)
90 2jy5_A Ubiquilin-1; UBA, alter 65.8 4.4 0.00015 22.6 2.3 25 95-125 27-51 (52)
91 1whc_A RSGI RUH-027, UBA/UBX 3 64.5 7.6 0.00026 22.6 3.3 28 95-127 23-50 (64)
92 1ify_A HHR23A, UV excision rep 62.4 5.4 0.00019 21.9 2.3 25 95-125 22-46 (49)
93 2dag_A Ubiquitin carboxyl-term 61.4 10 0.00035 22.7 3.6 29 95-128 23-51 (74)
94 2okx_A Rhamnosidase B; alpha b 57.5 22 0.00074 31.3 6.3 68 64-132 595-674 (956)
95 2ip6_A PAPB, PEDB; immunity pr 56.4 37 0.0013 21.9 6.4 65 61-134 35-99 (112)
96 1vek_A UBP14, ubiquitin-specif 55.7 16 0.00053 22.5 3.8 28 95-127 43-70 (84)
97 2vn4_A Glucoamylase; hydrolase 55.0 45 0.0015 27.8 7.6 63 67-133 11-99 (599)
98 2dkl_A Trinucleotide repeat co 54.2 15 0.00053 22.6 3.6 27 96-128 36-62 (85)
99 2cwb_A Chimera of immunoglobul 52.2 14 0.00046 24.0 3.2 24 96-125 82-105 (108)
100 3a0o_A Oligo alginate lyase; a 51.0 46 0.0016 28.3 7.2 68 63-132 335-411 (776)
101 3eu8_A Putative glucoamylase; 49.9 87 0.003 25.2 8.2 90 35-126 62-170 (430)
102 1q02_A Sequestosome 1; helical 49.8 18 0.0006 20.3 2.9 22 111-132 6-28 (52)
103 2p0v_A Hypothetical protein BT 49.2 1.1E+02 0.0036 25.1 8.7 46 36-81 178-225 (489)
104 1wj7_A Hypothetical protein (R 46.2 34 0.0012 22.0 4.3 36 95-136 54-89 (104)
105 3e7j_A Heparinase II protein; 44.6 30 0.001 29.8 5.0 61 78-141 223-288 (749)
106 2ahf_A Unsaturated glucuronyl 40.1 87 0.003 24.5 6.7 92 37-131 147-262 (377)
107 3h7l_A Endoglucanase; dehydrog 40.0 1.2E+02 0.004 25.4 7.8 87 39-126 364-485 (586)
108 2fba_A Glucoamylase Glu1; (alp 39.9 87 0.003 25.4 6.9 72 32-104 139-229 (492)
109 1dv0_A DNA repair protein HHR2 39.6 17 0.00058 19.7 1.8 26 95-126 18-43 (47)
110 3k7x_A LIN0763 protein; Q92DQ0 39.4 79 0.0027 24.3 6.4 95 35-132 147-255 (349)
111 1gai_A Glucoamylase-471; hydro 38.7 1.2E+02 0.0041 24.5 7.5 63 67-133 12-99 (472)
112 1z96_A DNA-damage, UBA-domain 38.4 38 0.0013 17.0 3.1 20 97-122 20-39 (40)
113 4gl3_A Putative glucoamylase; 37.4 1.5E+02 0.0051 23.7 7.8 68 36-105 53-137 (424)
114 3e6u_A LANC-like protein 1; al 36.7 1.1E+02 0.0038 23.9 6.9 23 112-134 253-275 (411)
115 2cos_A Serine/threonine protei 35.1 62 0.0021 18.2 3.8 29 96-129 24-52 (54)
116 2g0d_A Nisin biosynthesis prot 31.8 1.7E+02 0.0059 22.4 7.5 25 61-85 227-254 (409)
117 2fba_A Glucoamylase Glu1; (alp 31.5 1.6E+02 0.0054 23.9 7.2 44 90-133 66-116 (492)
118 3rrs_A Cellobiose phosphorylas 30.0 77 0.0026 27.5 5.3 67 64-130 382-479 (822)
119 2cp8_A NEXT to BRCA1 gene 1 pr 29.4 75 0.0026 17.8 3.5 30 96-131 25-54 (54)
120 3emu_A Leucine rich repeat and 29.2 1.1E+02 0.0039 20.2 5.2 58 61-126 68-128 (161)
121 3s4e_A Dual specificity protei 28.9 91 0.0031 20.1 4.5 56 63-126 64-122 (144)
122 3a0o_A Oligo alginate lyase; a 27.7 2E+02 0.0069 24.3 7.5 40 96-135 319-362 (776)
123 1ut9_A Cellulose 1,4-beta-cell 27.4 75 0.0026 26.5 4.7 65 81-145 172-282 (609)
124 2lbc_A Ubiquitin carboxyl-term 27.2 68 0.0023 20.8 3.6 26 96-127 93-118 (126)
125 2z07_A Putative uncharacterize 26.7 1.4E+02 0.0047 23.1 5.9 63 66-133 5-70 (420)
126 1ks8_A Endo-B-1,4-glucanase; c 24.4 34 0.0012 27.3 1.9 52 81-132 50-113 (433)
127 1gai_A Glucoamylase-471; hydro 24.0 1.5E+02 0.0053 23.9 5.8 42 62-104 154-197 (472)
128 3k7x_A LIN0763 protein; Q92DQ0 23.1 2.5E+02 0.0086 21.4 7.6 89 38-132 46-137 (349)
129 3ren_A Glycosyl hydrolase, fam 22.5 2.7E+02 0.0093 21.6 8.1 57 39-103 283-346 (350)
130 3qde_A Cellobiose phosphorylas 22.3 1.3E+02 0.0045 26.0 5.3 67 64-130 375-472 (811)
131 1ia6_A Cellulase CEL9M; cellul 21.9 3E+02 0.01 21.8 7.4 64 61-125 275-343 (441)
132 1ixs_A Holliday junction DNA h 21.1 1.1E+02 0.0037 17.4 3.2 25 96-123 18-42 (62)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.95 E-value=3.1e-27 Score=203.01 Aligned_cols=144 Identities=37% Similarity=0.822 Sum_probs=128.2
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
|+||||++|+.+++..+++.+||.+.|++.+++++++++|+++|.+|..++...|.++.++++++++|+++||+++|++|
T Consensus 495 ~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~D 574 (732)
T 1w6k_A 495 NPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRAD 574 (732)
T ss_dssp CTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCC
Confidence 68999999999999999999999999999899999999999999999999876666555567788999999999999999
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 81 GSWYGRWGVCFIYSTWWAISGLVAAEKTYSNC---LPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 81 G~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~---~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
|+|.+.|+.+++|.|++|+.+|..+|...... +.++|+++||+++|++||||++...+|+++.|
T Consensus 575 GsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y 641 (732)
T 1w6k_A 575 GSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 641 (732)
T ss_dssp SCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSC
T ss_pred CCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCcccccccc
Confidence 99999999999999999999999999863233 78999999999999999999987766655544
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.90 E-value=4.2e-23 Score=174.99 Aligned_cols=132 Identities=30% Similarity=0.498 Sum_probs=114.3
Q ss_pred CCCCCccccccccccchhhhcCccccccC--ccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDE--VIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQK 78 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~--~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~ 78 (145)
|+||||+.|+..+...++..+| |.+ .++|++++++|+++|.+|..++. +. ..++++|+++||+++|+
T Consensus 412 ~~dGgf~~~~~~~~~~~~~~~~----F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--~~-----~~~~i~rai~~L~~~Q~ 480 (631)
T 2sqc_A 412 SSNGGWGAYDVDNTSDLPNHIP----FSDFGEVTDPPSEDVTAHVLECFGSFGY--DD-----AWKVIRRAVEYLKREQK 480 (631)
T ss_dssp CTTSCBCSSCSSCCCSGGGGST----TCSSSCSSCCCBHHHHHHHHHHHHTTTC--CT-----TSHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCCCccccccccc----cccCCcccCCCCchHHHHHHHHHHhcCC--Cc-----cHHHHHHHHHHHHHhcC
Confidence 5799999999988888888887 443 46789999999999999998863 21 24678999999999999
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 79 PDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 79 ~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
+||+|.++|+.+++|.|+.++.+|..+|.. ...+.++|+++||+++|++||||++.+.+|+++.|
T Consensus 481 ~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~-~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~ 545 (631)
T 2sqc_A 481 PDGSWFGRWGVNYLYGTGAVVSALKAVGID-TREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAY 545 (631)
T ss_dssp TTSCCCCSSBSSHHHHHHHHHHHHHHTTCC-TTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGG
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhCcCCCCcCCcccccccccc
Confidence 999999999999999999999999999976 46789999999999999999999998887766544
No 3
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.89 E-value=1.6e-23 Score=168.09 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=103.7
Q ss_pred CCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCC
Q 046854 2 KSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDG 81 (145)
Q Consensus 2 ~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG 81 (145)
+||||++|+..+.+. ..+.+|.+ +.++|++++.+|+.||.+|.+++...+ ++++ +++++||+++|+|||
T Consensus 91 ~~GGF~g~~~~~~p~-~d~~~~~~---~~~~d~~~v~~T~~Al~~L~~lg~~~~-----~id~--~~~~~fL~~~Q~~DG 159 (377)
T 1n4q_B 91 DRCGFRGSSYLGIPF-NPSKNPGT---AHPYDSGHIAMTYTGLSCLIILGDDLS-----RVDK--EACLAGLRALQLEDG 159 (377)
T ss_dssp GGCEECSSSTTCCCC-CSSCSCCC---CCTTCCCCHHHHHHHHHHHHHTTCCST-----TSCH--HHHHHHHHHHBCTTS
T ss_pred CCCccCCCcccCCCh-hhhccccc---cccCCCCCHHHHHHHHHHHHHhCcccc-----hhhH--HHHHHHHHHhcCCCC
Confidence 489999999865432 34444443 568899999999999999999985432 3454 899999999999999
Q ss_pred Cccc--cCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 82 SWYG--RWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 82 ~w~~--~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
+|.+ .||+.+++.|++|+.+|..+|.. ..+.++|+++||++||++|||||+.+..
T Consensus 160 Sf~g~~~wGe~DirftY~Al~~l~llg~~--~~~~v~ka~~fL~scQn~DGGfGe~p~~ 216 (377)
T 1n4q_B 160 SFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQGAGL 216 (377)
T ss_dssp CBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSSTTS
T ss_pred CeeeccCCCcchhHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 9998 69999999999999999999974 4567999999999999999999998753
No 4
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.85 E-value=5.4e-21 Score=157.58 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=98.8
Q ss_pred cCccccccCcc--ccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHH
Q 046854 21 LNPIEFLDEVI--IEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWW 97 (145)
Q Consensus 21 ~~~~~~~~~~~--~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~ 97 (145)
.++.++|+..+ .+.+++.+|+.||.+|+++++..|+++.++|+..++++++||+++|++||+|.+ .||+++++.|++
T Consensus 122 Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~ 201 (520)
T 3q7a_B 122 LSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYC 201 (520)
T ss_dssp BCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHH
T ss_pred cCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHH
Confidence 34566677666 789999999999999999998766556667775569999999999999999998 599999999999
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCC
Q 046854 98 AISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 98 al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
|+.+|..+|.. ..+.++++++||++||+.|||||+
T Consensus 202 Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 202 LLVVATLLDII--TPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred HHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccC
Confidence 99999999985 578899999999999999999998
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.84 E-value=1.4e-21 Score=159.35 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=88.4
Q ss_pred ccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc-CCcchhhHHHHHHHH
Q 046854 23 PIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-WGVCFIYSTWWAISG 101 (145)
Q Consensus 23 ~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~-~g~~~~~~T~~al~a 101 (145)
+.++|....++.+++..|+.||.+|.+++... ..+++ .++|+++||+++|++||+|.+. ||+.+++.|++|+.+
T Consensus 136 ~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~---~~~~i--~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~ 210 (437)
T 2h6f_B 136 PEGGFGGGPGQYPHLAPTYAAVNALCIIGTEE---AYDII--NREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASV 210 (437)
T ss_dssp TTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHH---HHTTS--CHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHH
T ss_pred CCCCcCCccCCCcchhHHHHHHHHHHHhCCcc---cccch--HHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHH
Confidence 44444444445678899999999999997531 00122 2689999999999999999984 999999999999999
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 102 LVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 102 L~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
|.++|.. ..+.++|+++||++||++|||||+.+..
T Consensus 211 L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~pg~ 245 (437)
T 2h6f_B 211 ASLTNII--TPDLFEGTAEWIARCQNWEGGIGGVPGM 245 (437)
T ss_dssp HHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSSTTS
T ss_pred HHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCCCCC
Confidence 9999875 4567899999999999999999987654
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.79 E-value=2.1e-19 Score=142.00 Aligned_cols=108 Identities=27% Similarity=0.388 Sum_probs=92.0
Q ss_pred CccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc-CCcchhhHHHHHHH
Q 046854 22 NPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR-WGVCFIYSTWWAIS 100 (145)
Q Consensus 22 ~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~-~g~~~~~~T~~al~ 100 (145)
+|.++|+..+...+++..|+.||.+|.+++.. ++++ ++|+++||+++|++||+|.+. ||+.+++.|++|+.
T Consensus 80 ~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~------~~id--~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~ 151 (331)
T 3dss_B 80 HECGGVSASIGHDPHLLYTLSAVQILTLYDSI------HVIN--VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVA 151 (331)
T ss_dssp CTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCG------GGSC--HHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHH
T ss_pred CCCCCcCCCCCCCccHHHHHHHHHHHHHcCCc------cHHH--HHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHH
Confidence 46666777666789999999999999998642 1344 599999999999999999884 89999999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCC
Q 046854 101 GLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSC 139 (145)
Q Consensus 101 aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~ 139 (145)
+|..+|.. ..+.++|+++||++||++||||+..+...
T Consensus 152 ~L~llg~~--~~~~~~k~v~~L~s~Q~~dGGfg~~pg~e 188 (331)
T 3dss_B 152 TLALLGKL--DAINVEKAIEFVLSCMNFDGGFGCRPGSE 188 (331)
T ss_dssp HHHHHTCG--GGSCHHHHHHHHHTTBCTTSCBCSSTTCC
T ss_pred HHHhcCCC--CHHHHHHHHHHHHHhCcCCCCcCCCCCCC
Confidence 99999975 45679999999999999999999877543
No 7
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.75 E-value=2e-18 Score=136.50 Aligned_cols=112 Identities=15% Similarity=0.060 Sum_probs=91.5
Q ss_pred ccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCC-cchhhHHHHHHHH
Q 046854 23 PIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWG-VCFIYSTWWAISG 101 (145)
Q Consensus 23 ~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g-~~~~~~T~~al~a 101 (145)
++++|....+..+++..|+.|+.+|.+++... ...++|+++||+++|++||+|...++ +++...|++|+.+
T Consensus 129 ~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~a 200 (331)
T 3dss_B 129 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLD--------AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGF 200 (331)
T ss_dssp TTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHH
T ss_pred CCCCEecccCCCCchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHH
Confidence 56667665556678999999999999997532 12469999999999999999988765 4678889999999
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 102 LVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 102 L~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
|..++... ...++++++||+++|++||||+..+.+.++..|
T Consensus 201 L~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cy 241 (331)
T 3dss_B 201 LAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCY 241 (331)
T ss_dssp HHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHH
T ss_pred HHhccccc--hhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchh
Confidence 99998762 445899999999999999999988777666554
No 8
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.74 E-value=1.7e-18 Score=139.11 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=87.1
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCC------ccchhhhHHHHHHHHHHHH
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHP------KHRKNEVNNFIINAVKFIE 74 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~------~~~~~~i~~~i~ka~~~L~ 74 (145)
++||||+.|+.++ ..|+++|+ |++ ++|+++|..|..++...+ +...++..++++|+++||+
T Consensus 189 ~~nGGWpqFdpdn-~~y~~~Ip----FnD--------Dvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll 255 (408)
T 1r76_A 189 FPNGGWPQVWPLE-GGYHDAIT----YND--------DALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIV 255 (408)
T ss_dssp CTTSCCBSBSSCC-CGGGGSEE----CGG--------GHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCccc-cccccCCC----cCc--------HHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHH
Confidence 5899999999988 58999998 655 789999999999876211 1112245679999999999
Q ss_pred HhCCC-CCCccccCCcchhhHHHH-------------------HHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcC
Q 046854 75 DLQKP-DGSWYGRWGVCFIYSTWW-------------------AISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWG 133 (145)
Q Consensus 75 ~~Q~~-dG~w~~~~g~~~~~~T~~-------------------al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg 133 (145)
+.|.+ ||+|. +||..+.|+|.. +|..|...... ++....|++|++||+++|++||+|-
T Consensus 256 ~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 256 ETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred HhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 99999 99998 999877775543 33333333321 0123479999999999999999997
No 9
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.69 E-value=2.1e-17 Score=134.75 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHHHHHHHHcCCCC-CCcH
Q 046854 36 YVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWAISGLVAAEKTY-SNCL 113 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~al~aL~~~g~~~-~~~~ 113 (145)
.+-.++++|.+|.+++...+ ...++++++||+++|++||||.+ .|+.++++.|+.||.+|..+|... ...+
T Consensus 100 r~~l~y~~l~aL~lLg~~~~-------~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i 172 (437)
T 2h6f_B 100 RPWLCYWILHSLELLDEPIP-------QIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDII 172 (437)
T ss_dssp HHHHHHHHHHHHHHTTCCCC-------HHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTS
T ss_pred CccHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccch
Confidence 34457788999999984321 24579999999999999999988 788899999999999999998641 1235
Q ss_pred HHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 114 PIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 114 ~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
.++|+++||+++|++||||+....+
T Consensus 173 ~i~kav~~L~s~Q~~DGsf~~~~~G 197 (437)
T 2h6f_B 173 NREKLLQYLYSLKQPDGSFLMHVGG 197 (437)
T ss_dssp CHHHHHHHHHTTBCTTSCBBSSTTC
T ss_pred HHHHHHHHHHHhCCCCCCeeecCCC
Confidence 6899999999999999999976544
No 10
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.67 E-value=1.5e-17 Score=130.40 Aligned_cols=113 Identities=10% Similarity=0.163 Sum_probs=89.3
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccc--------hhhhHHHHHHHHHH
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHR--------KNEVNNFIINAVKF 72 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~--------~~~i~~~i~ka~~~ 72 (145)
++||||+.|+.++ ..|+++|| |+| ++|+++|+.|..++...+++. .++..++++|+++|
T Consensus 111 ~~nGGWpqFdpd~-~~Yl~~Ip----FnD--------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~ 177 (332)
T 1gxm_A 111 YSTGALPQFYPLK-GGYSDHAT----FND--------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDY 177 (332)
T ss_dssp CTTSCCBSEESCC-SGGGGSEE----CGG--------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCc-ccccccCC----cch--------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHH
Confidence 5899999999986 67999998 665 789999999999874222110 03456799999999
Q ss_pred HHHhCCCCCCccccCCcchhhHHHH----------HHHHHHHc-------CCCCCCcH----HHHHHHHHHHhcccC
Q 046854 73 IEDLQKPDGSWYGRWGVCFIYSTWW----------AISGLVAA-------EKTYSNCL----PIRKATDFLLNIQCG 128 (145)
Q Consensus 73 L~~~Q~~dG~w~~~~g~~~~~~T~~----------al~aL~~~-------g~~~~~~~----~v~~a~~~L~~~Q~~ 128 (145)
|++.|.++|+|.++||..+.+.|.. +|.++..+ +.. . .+ .|++|++||.++|++
T Consensus 178 Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~-~-~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 178 ILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQP-Q-TAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp HHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSC-C-CHHHHHHHHHHHHHHTCTTTS
T ss_pred HHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCC-C-CHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988887776 55555444 333 2 34 799999999999993
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.62 E-value=2e-15 Score=127.92 Aligned_cols=96 Identities=27% Similarity=0.515 Sum_probs=79.4
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-----------cCCcchhhHHHHHHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG-----------RWGVCFIYSTWWAISGL 102 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~-----------~~g~~~~~~T~~al~aL 102 (145)
..++.+|++++.+|..++... ..+.++|+++||+++|++||+|.. .++.+++..|++||.+|
T Consensus 491 ~~~~y~Ta~~l~aL~~~g~~~-------~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL 563 (631)
T 2sqc_A 491 VNYLYGTGAVVSALKAVGIDT-------REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMAL 563 (631)
T ss_dssp SSHHHHHHHHHHHHHHTTCCT-------TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCCcc-------cHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHH
Confidence 345678999999999886421 246789999999999999999953 13456788899999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCC
Q 046854 103 VAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESYLS 138 (145)
Q Consensus 103 ~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s 138 (145)
..+|.. ..+.++|+++||+++|++||||++...+
T Consensus 564 ~~ag~~--~~~~i~rav~wL~~~Q~~dGgw~~~~~t 597 (631)
T 2sqc_A 564 IAGGRA--ESEAARRGVQYLVETQRPDGGWDEPYYT 597 (631)
T ss_dssp HHTTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCC
T ss_pred HHcCCC--ChHHHHHHHHHHHhccCCCCCcCCCCcc
Confidence 999886 3588999999999999999999987654
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.58 E-value=5.1e-15 Score=127.33 Aligned_cols=103 Identities=23% Similarity=0.328 Sum_probs=77.7
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc--------------------cCCc--ch
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG--------------------RWGV--CF 91 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~--------------------~~g~--~~ 91 (145)
+|++++|+.+|.+|..+.+..+.......+++++++++||+++|++||+|.. .+.. ++
T Consensus 451 ~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~ 530 (732)
T 1w6k_A 451 WIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTY 530 (732)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCB
T ss_pred CCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCc
Confidence 5789999999999999876532111112356899999999999999999952 1111 25
Q ss_pred hhHHHHHHHHHHHcCCC-C-----CCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 92 IYSTWWAISGLVAAEKT-Y-----SNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 92 ~~~T~~al~aL~~~g~~-~-----~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
+..|+.+|.+|..++.. + ...+.++||++||+++|++||||+...
T Consensus 531 v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~w 581 (732)
T 1w6k_A 531 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSW 581 (732)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSS
T ss_pred chHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcC
Confidence 66899999999987642 0 125789999999999999999997643
No 13
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.53 E-value=2.1e-14 Score=115.44 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=82.1
Q ss_pred cCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCC---C-CCCccc------------cCCcchhhHHH
Q 046854 33 EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQK---P-DGSWYG------------RWGVCFIYSTW 96 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~---~-dG~w~~------------~~g~~~~~~T~ 96 (145)
+.+++..|+.||.+|++++.. .. +.|++ ++.++||.++|+ | ||+|.. .+|+.+++.++
T Consensus 90 ~~~hl~~Ty~Al~~L~ilg~~--~~--~~vdr--~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~Y 163 (390)
T 3dra_B 90 DCPNLSSTLFALYNLLILKSP--YH--TIINR--KKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCY 163 (390)
T ss_dssp SCCBHHHHHHHHHHHHHTTCC--GG--GTCCH--HHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHhCch--hh--ccccH--HHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHH
Confidence 679999999999999999753 00 23555 889999999999 7 899972 26788999999
Q ss_pred HHHHHHHHcCCCCC-----------CcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 97 WAISGLVAAEKTYS-----------NCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 97 ~al~aL~~~g~~~~-----------~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
+|+..+..++.... ....++++++||++||+.||||+..+.
T Consensus 164 cA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~ 215 (390)
T 3dra_B 164 MALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIM 215 (390)
T ss_dssp HHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTT
T ss_pred HHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCC
Confidence 99999999987620 035689999999999999999998775
No 14
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.50 E-value=1.3e-13 Score=105.78 Aligned_cols=90 Identities=23% Similarity=0.138 Sum_probs=70.1
Q ss_pred cCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHH-hCCCCCCccccCCcc--------------hhhHHHH
Q 046854 33 EHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIED-LQKPDGSWYGRWGVC--------------FIYSTWW 97 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~-~Q~~dG~w~~~~g~~--------------~~~~T~~ 97 (145)
+++++..|++++..|..+.+..+. -+++++++++||++ .|++||+|...|+.. ....|++
T Consensus 63 ~~~s~wlTa~v~~~l~~a~~~~~v-----~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~ 137 (277)
T 1qqf_A 63 RPPSTWLTAYVSRVFSLAANLIAI-----DSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAF 137 (277)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCC-----CHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHH
Confidence 347778899999999998753211 13688999999996 999999998766432 2556899
Q ss_pred HHHHHHHcC------CCCCCcHHHHHHHHHHHhcccC
Q 046854 98 AISGLVAAE------KTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 98 al~aL~~~g------~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
++.+|...+ .. ...+.|+||++||.++|+.
T Consensus 138 vl~aL~~~~~~~~~~~~-~~~~~i~~A~~~L~~~~~~ 173 (277)
T 1qqf_A 138 VLIALQEARDICEGQVN-SLPGSINKAGEYLEASYLN 173 (277)
T ss_dssp HHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhccccCCC-chHHHHHHHHHHHHHHhcc
Confidence 999998873 33 3578899999999999875
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.48 E-value=1.9e-13 Score=106.52 Aligned_cols=89 Identities=27% Similarity=0.163 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHH-hCCCCCCccccCCcc--------------hhhHHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIED-LQKPDGSWYGRWGVC--------------FIYSTWWA 98 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~-~Q~~dG~w~~~~g~~--------------~~~~T~~a 98 (145)
++++..|++|+.+|+.+.+.... -+++++++++||++ .|++||+|.+.|+.. ....|+++
T Consensus 80 ~~s~wlTa~v~~~l~~a~~~~~v-----~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~v 154 (310)
T 2wy7_A 80 APSTWLTAYVVKVFSLAVNLIAI-----DSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFV 154 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCC-----CHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHH
Confidence 46778899999999998753211 13688999999996 999999998866532 25568999
Q ss_pred HHHHHHcC------CCCCCcHHHHHHHHHHHhcccC
Q 046854 99 ISGLVAAE------KTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 99 l~aL~~~g------~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
+.+|...+ .. ...+.|+||++||.++|+.
T Consensus 155 l~aL~~~~~~~~~~~~-~~~~~i~~A~~~L~~~~~~ 189 (310)
T 2wy7_A 155 LISLQEAKDICEEQVN-SLPGSITKAGDFLEANYMN 189 (310)
T ss_dssp HHHHHHHHHHHTTTCT-THHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcccccccCCc-chHHHHHHHHHHHHHHhhc
Confidence 99998874 33 3578899999999999875
No 16
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.43 E-value=2.3e-13 Score=106.70 Aligned_cols=121 Identities=14% Similarity=0.032 Sum_probs=85.7
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
+++|||+=.-.-... .... ......+++.+.|+.+|.+|+.+.... ..+.+.++++|+++||+++|.+|
T Consensus 45 ~~~GGW~kn~d~~~~----~~~~----~~~~~~t~DnddTa~vl~~Larv~~~~---~~~~y~~Ai~Rgl~wlL~mQ~~n 113 (332)
T 1gxm_A 45 QNNGGWPKNLDYNSV----GNGG----GGNESGTIDNGATITEMVFLAEVYKSG---GNTKYRDAVRKAANFLVNSQYST 113 (332)
T ss_dssp CTTSCCCSCCCTTTC----CCCC----CCCSCEECGGGTTHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHCCTT
T ss_pred cCCCCCCcceecccc----cccC----CCCCCCCccCccHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHhccCCC
Confidence 468999876431111 1111 112335678899999999999876532 12357889999999999999999
Q ss_pred CCccccCCcch---------hhHHHHHHHHHHHcCCC--------------CCCcHHHHHHHHHHHhcccCCCCc
Q 046854 81 GSWYGRWGVCF---------IYSTWWAISGLVAAEKT--------------YSNCLPIRKATDFLLNIQCGDGGW 132 (145)
Q Consensus 81 G~w~~~~g~~~---------~~~T~~al~aL~~~g~~--------------~~~~~~v~~a~~~L~~~Q~~dGgw 132 (145)
|||+..+-... -..|+.+|..|..++.. .+..++++||++||++.|.+||||
T Consensus 114 GGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw 188 (332)
T 1gxm_A 114 GALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGV 188 (332)
T ss_dssp SCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTE
T ss_pred CCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCC
Confidence 99976321110 12589999999887531 134678999999999999999986
No 17
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.42 E-value=3.7e-13 Score=111.13 Aligned_cols=112 Identities=14% Similarity=0.020 Sum_probs=85.5
Q ss_pred ccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccc-----------------
Q 046854 23 PIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYG----------------- 85 (145)
Q Consensus 23 ~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~----------------- 85 (145)
+.++|....+...++..|+.|+.+|.+++... ...++|+++||+++|+.||||+.
T Consensus 182 ~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~--------~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~ 253 (520)
T 3q7a_B 182 PDGGFVVCEGGEVDVRGTYCLLVVATLLDIIT--------PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPT 253 (520)
T ss_dssp TTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCC--------HHHHTTHHHHHHTTBCTTSSBCSCEEEEC-----------
T ss_pred CCCCEecCCCCCchHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhcCCCCCccCccccccccccccccccc
Confidence 56666654455678899999999999997532 34689999999999999999976
Q ss_pred -------cCCcchhhHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHHhccc---CCCCcCCCCCCCCCC
Q 046854 86 -------RWGVCFIYSTWWAISGLVAAEKTYS----NCLPIRKATDFLLNIQC---GDGGWGESYLSCPNK 142 (145)
Q Consensus 86 -------~~g~~~~~~T~~al~aL~~~g~~~~----~~~~v~~a~~~L~~~Q~---~dGgwg~~~~s~~~~ 142 (145)
..++.+.-.|++||.+|..++..+. ....+++.++||.++|. ++|||.-.+..-.+.
T Consensus 254 ~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~ 324 (520)
T 3q7a_B 254 SEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDG 324 (520)
T ss_dssp -CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCT
T ss_pred cccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCch
Confidence 1455677789999999999987421 24568999999999996 579996544444443
No 18
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.42 E-value=6.4e-13 Score=106.53 Aligned_cols=119 Identities=11% Similarity=-0.031 Sum_probs=89.2
Q ss_pred chhhhcC-ccccccCc-cccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccC-Ccchh
Q 046854 16 SWIELLN-PIEFLDEV-IIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRW-GVCFI 92 (145)
Q Consensus 16 ~~l~~~~-~~~~~~~~-~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~-g~~~~ 92 (145)
.|+..++ |+++|... .+...++..|+.|+.+|.+++... ...++|+++||+++|+.||||.... ++++.
T Consensus 149 ~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~--------~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~ 220 (377)
T 1n4q_B 149 AGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS--------GMDMKKAISYIRRSMSYDNGLAQGAGLESHG 220 (377)
T ss_dssp HHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGG--------GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCH
T ss_pred HHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHhcCCCCCCCCCCCCCCch
Confidence 4444443 66777653 456678899999999999887521 2347999999999999999997644 45677
Q ss_pred hHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHhcccCCCCcCCCCCCCCCCcc
Q 046854 93 YSTWWAISGLVAAEKTYSN--CLPIRKATDFLLNIQCGDGGWGESYLSCPNKVK 144 (145)
Q Consensus 93 ~~T~~al~aL~~~g~~~~~--~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~~~~ 144 (145)
-.|++|+.+|..++..+.. ...++++++||+++| +|||...+....+.-|
T Consensus 221 g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CY 272 (377)
T 1n4q_B 221 GSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCY 272 (377)
T ss_dssp HHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTH
T ss_pred hHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHH
Confidence 7899999999999865211 127999999999999 8999666665555544
No 19
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.35 E-value=4.8e-12 Score=101.74 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=76.6
Q ss_pred ccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcch---------hhHHHHHHHHH
Q 046854 32 IEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCF---------IYSTWWAISGL 102 (145)
Q Consensus 32 ~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~---------~~~T~~al~aL 102 (145)
..+++.+.|+.+|.+|+.+....+....+.+..++.|+++||+++|.+||||+..+-... -..|+.+|..|
T Consensus 143 ~~T~DnddTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L 222 (408)
T 1r76_A 143 VGTIDNDATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELL 222 (408)
T ss_dssp SSBCGGGTTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHH
Confidence 356788899999999998865411001246788999999999999999999976432111 12588888888
Q ss_pred HHcCCC------------CCCcHHHHHHHHHHHhcccC-CCCcC
Q 046854 103 VAAEKT------------YSNCLPIRKATDFLLNIQCG-DGGWG 133 (145)
Q Consensus 103 ~~~g~~------------~~~~~~v~~a~~~L~~~Q~~-dGgwg 133 (145)
..++.. .+..+.++||++||++.|.+ ||.|-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~ 266 (408)
T 1r76_A 223 SDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL 266 (408)
T ss_dssp HHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred HHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc
Confidence 877652 02467899999999999999 99874
No 20
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.33 E-value=4.6e-12 Score=101.04 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc-------------chhhHHHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV-------------CFIYSTWWAISG 101 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~-------------~~~~~T~~al~a 101 (145)
++...|++++.+|..+.+.... -+++++++++||++.|++||+|...+.. +.+..|++++.+
T Consensus 118 ~~~~lTa~v~~~l~~a~~~~~v-----~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~a 192 (367)
T 1hzf_A 118 SSTWLTAFVLKVLSLAQEQVGG-----SPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIA 192 (367)
T ss_dssp CCHHHHHHHHHHHHHHGGGTCC-----CHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHH
Confidence 3456799999999998764321 1468999999999999999999875432 236679999999
Q ss_pred HHHcCCCC----------CCcHHHHHHHHHHHhc
Q 046854 102 LVAAEKTY----------SNCLPIRKATDFLLNI 125 (145)
Q Consensus 102 L~~~g~~~----------~~~~~v~~a~~~L~~~ 125 (145)
|...|... ...+.++||++||+++
T Consensus 193 L~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 193 LHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp HHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 98876421 1245799999999876
No 21
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=99.26 E-value=1.8e-11 Score=98.78 Aligned_cols=94 Identities=20% Similarity=0.160 Sum_probs=74.6
Q ss_pred cCCChhHHHHHHHHHHHhhhhCC-ccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCC
Q 046854 33 EHDYVECTASALKAMTLFQKLHP-KHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSN 111 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~-~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~ 111 (145)
++.++|+|++|+.||.++.+... ......|+++++..+++|++.|++||+|+ +.|.|++||+||...+..+..
T Consensus 174 ~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~~~ 247 (414)
T 2bb6_A 174 DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPSVE 247 (414)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCCHH
T ss_pred CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCccc
Confidence 44689999999999999987521 11223466666666699999999999994 478899999999999886322
Q ss_pred -cHHHHHHHHHHHhcccCCCCcC
Q 046854 112 -CLPIRKATDFLLNIQCGDGGWG 133 (145)
Q Consensus 112 -~~~v~~a~~~L~~~Q~~dGgwg 133 (145)
...+.+++++|++ |.+||+|.
T Consensus 248 ~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 248 LGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHHHHHHH-HHTTTCCC
T ss_pred ccchHHHHHHHHHH-hccCCCCC
Confidence 2478899999999 99999997
No 22
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=99.22 E-value=3.7e-11 Score=96.50 Aligned_cols=94 Identities=22% Similarity=0.195 Sum_probs=77.8
Q ss_pred cCCChhHHHHHHHHHHHhhh---hCCc-cchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCC
Q 046854 33 EHDYVECTASALKAMTLFQK---LHPK-HRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKT 108 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~---~~~~-~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~ 108 (145)
++-++|++++|+.||.++.. .... .....+..++++++.+|++.|++||+|+ ++|.|+.||+||...+..
T Consensus 148 ~~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~ 221 (399)
T 2pmv_A 148 SPFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEP 221 (399)
T ss_dssp SCCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSC
T ss_pred CcccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCC
Confidence 45689999999999999986 2211 1123578999999999999999999994 689999999999999885
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCcC
Q 046854 109 YSNCLPIRKATDFLLNIQCGDGGWG 133 (145)
Q Consensus 109 ~~~~~~v~~a~~~L~~~Q~~dGgwg 133 (145)
+....++.++++||++ |..||+|+
T Consensus 222 ~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 222 SKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp CSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred ccccccHHHHHHHHHH-HhhCCCcC
Confidence 3333389999999999 99999997
No 23
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.19 E-value=7e-11 Score=94.16 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCccccCCc--chhhHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 60 NEVNNFIINAVKFIEDLQKPDGSWYGRWGV--CFIYSTWWAISGLVAAEKTY-SNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 60 ~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~--~~~~~T~~al~aL~~~g~~~-~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
+++...|+++++||++.|++|||| +.|+. ++.+.|+.++.+|..++... .....+++|++||+++|++||+|.+..
T Consensus 87 ~~~~~~i~~g~~~ll~~Q~~dGgf-~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~ 165 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQFRKADGSY-AAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPC 165 (367)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCe-eccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccc
Confidence 346678999999999999999999 45643 67889999999999886432 346899999999999999999999875
Q ss_pred CCCC
Q 046854 137 LSCP 140 (145)
Q Consensus 137 ~s~~ 140 (145)
...+
T Consensus 166 ~~~~ 169 (367)
T 1hzf_A 166 PVLD 169 (367)
T ss_dssp CCSC
T ss_pred cccc
Confidence 5543
No 24
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=6e-10 Score=89.53 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=70.8
Q ss_pred ccCCChhHHHHHHHHHHHhhhhCC---ccc----hhhhHHHHHHHHHHHHHhCCCCCCccc-cCCcchhhHHHHHHHHHH
Q 046854 32 IEHDYVECTASALKAMTLFQKLHP---KHR----KNEVNNFIINAVKFIEDLQKPDGSWYG-RWGVCFIYSTWWAISGLV 103 (145)
Q Consensus 32 ~d~~~~~~T~~al~aL~~~~~~~~---~~~----~~~i~~~i~ka~~~L~~~Q~~dG~w~~-~~g~~~~~~T~~al~aL~ 103 (145)
....++-.++.|+.++.+++...+ +.+ ...++ ++++++||+++|+.||||.. ..++++.-.|++||.+|.
T Consensus 154 ~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id--~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~ 231 (390)
T 3dra_B 154 YGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDID--LISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231 (390)
T ss_dssp ESCCCHHHHHHHHHHHHHTTCC-------------CCCC--HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhCCCccccccccccccccccc--HHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHH
Confidence 456888999999999999875430 000 00122 58999999999999999987 445677778999999999
Q ss_pred HcCCCCCCcHHHHHHHHHHHhccc
Q 046854 104 AAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 104 ~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
.++.. ...+++.++||.++|.
T Consensus 232 lL~~~---~~d~~~l~~WL~~RQ~ 252 (390)
T 3dra_B 232 LLNYP---LEKLKSTKEWLIHRQV 252 (390)
T ss_dssp HTTCC---GGGCHHHHHHHHTTBC
T ss_pred HhCcc---cccHHHHHHHHHHcCc
Confidence 99976 2568899999999998
No 25
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.03 E-value=3.2e-09 Score=81.22 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHh-cccCCCCcCCC
Q 046854 60 NEVNNFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLN-IQCGDGGWGES 135 (145)
Q Consensus 60 ~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~-~Q~~dGgwg~~ 135 (145)
+++.+.|++++++++++|++||||+. |+ .++++.|+.++.+|..+... ..+...++++++||++ .|++||+|.+.
T Consensus 34 ~~~~~~i~~g~~~~l~~q~~dGgf~~-f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~ 112 (277)
T 1qqf_A 34 QEALELIKKGYTQQLAFKQPISAYAA-FNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQED 112 (277)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBCS-STTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc-cCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCC
Confidence 34566899999999999999999954 54 35788899999999988642 2456889999999996 99999999765
Q ss_pred CC
Q 046854 136 YL 137 (145)
Q Consensus 136 ~~ 137 (145)
..
T Consensus 113 ~~ 114 (277)
T 1qqf_A 113 GP 114 (277)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 26
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.02 E-value=1.4e-09 Score=99.50 Aligned_cols=102 Identities=16% Similarity=0.080 Sum_probs=78.6
Q ss_pred CCCCCccccccccccchhhhcCccccccCccccCCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCC
Q 046854 1 SKSGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPD 80 (145)
Q Consensus 1 n~dGgw~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~d 80 (145)
++||||++|...+.. +.++.-.|++++..|+.+.+..+- -+..++++++||++.|++|
T Consensus 997 ~~dGgf~~f~~~~~~-----------------~~~s~wlTAyv~~~l~~a~~~~~v-----~~~~l~~a~~wL~~~Q~~d 1054 (1451)
T 4acq_A 997 HYDGSYSTFGERYGR-----------------NQGNTWLTAFVLKTFAQARAYIFI-----DEAHITQALIWLSQRQKDN 1054 (1451)
T ss_dssp CTTSCBCSSTTGGGC-----------------CCCCHHHHHHHHHHHHHHTTTSCC-----CTHHHHHHHHHHHHTEETT
T ss_pred CCCCCeeeccCCCCC-----------------CCCchhHHHHHHHHHHHhhhhccc-----CHHHHHHHHHHHHhhcccC
Confidence 578888888753210 235667899999999988754311 1468999999999999999
Q ss_pred CCccc--cC-------C-cchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 81 GSWYG--RW-------G-VCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 81 G~w~~--~~-------g-~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
|+|.. +| | ..+++.|+.+|.+|...|.. ..++.+++|++||+++
T Consensus 1055 G~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~-~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1055 GCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLT-VTHPVVRNALFCLESA 1108 (1451)
T ss_dssp TEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCC-TTCHHHHHHHHHHHHH
T ss_pred CcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCC-CCCHHHHHHHHHHHHh
Confidence 99974 33 1 14577899999999999986 4678999999999976
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.01 E-value=7e-10 Score=100.48 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=70.8
Q ss_pred cCCChhHHHHHHHHHHHhhhhCCccchhhh-HHHHHHHHHHHHHhCCCCCCccccCCc----------chhhHHHHHHHH
Q 046854 33 EHDYVECTASALKAMTLFQKLHPKHRKNEV-NNFIINAVKFIEDLQKPDGSWYGRWGV----------CFIYSTWWAISG 101 (145)
Q Consensus 33 d~~~~~~T~~al~aL~~~~~~~~~~~~~~i-~~~i~ka~~~L~~~Q~~dG~w~~~~g~----------~~~~~T~~al~a 101 (145)
+.++...|++++.+|+.+.+.. . .+ +..++++++||++.|++||+|...|.. .....|+.++.+
T Consensus 897 ~~~s~~lTa~v~~~l~~a~~~~--~---~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~a 971 (1325)
T 2pn5_A 897 TNGSVFLTAFVGTSMQTAVKYI--S---DIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMA 971 (1325)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTC--S---CSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHH
T ss_pred CCCCeeehHHHHHHHHHHHhhE--E---cCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHH
Confidence 3467788999999999986532 1 11 367899999999999999999775432 123456777778
Q ss_pred HHHcCCCC-CCcHHHHHHHHHHHhcccC-CCCcCC
Q 046854 102 LVAAEKTY-SNCLPIRKATDFLLNIQCG-DGGWGE 134 (145)
Q Consensus 102 L~~~g~~~-~~~~~v~~a~~~L~~~Q~~-dGgwg~ 134 (145)
|...|... .....+++|++||.++|+. +++|+.
T Consensus 972 L~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~ 1006 (1325)
T 2pn5_A 972 LLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL 1006 (1325)
T ss_dssp HHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred HhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH
Confidence 87665321 1346799999999999877 788753
No 28
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.97 E-value=6.3e-09 Score=80.91 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHh-cccCCCCcCCC
Q 046854 60 NEVNNFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLN-IQCGDGGWGES 135 (145)
Q Consensus 60 ~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~-~Q~~dGgwg~~ 135 (145)
.++.+.|++++++++++|++||||+. |+ .+.++.|+.|+.+|..+... ..+...++++++||++ .|++||+|...
T Consensus 50 ~~~~~~i~~g~~~~l~~q~~dGgf~~-f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~ 128 (310)
T 2wy7_A 50 QGALELIKKGYTQQLAFRQPSSAFAA-FVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQED 128 (310)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBCS-STTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc-CCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccC
Confidence 34556899999999999999999953 44 35788899999999988642 2456889999999996 99999999765
Q ss_pred CC
Q 046854 136 YL 137 (145)
Q Consensus 136 ~~ 137 (145)
..
T Consensus 129 ~~ 130 (310)
T 2wy7_A 129 AP 130 (310)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 29
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.92 E-value=5.3e-09 Score=91.89 Aligned_cols=90 Identities=27% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHH-hCCCCCCccccCCc--------------chhhHHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIED-LQKPDGSWYGRWGV--------------CFIYSTWWA 98 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~-~Q~~dG~w~~~~g~--------------~~~~~T~~a 98 (145)
+++...|++++..|..+.+... .-+.+++++++||++ .|.+||+|...+.. .....|+++
T Consensus 325 ~~s~wlTAyv~~~l~~a~~~~~-----v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyv 399 (915)
T 2hr0_B 325 APSTWLTAYVVKVFSLAVNLIA-----IDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFV 399 (915)
T ss_dssp CBCHHHHHHHHHHHHTTTTTSC-----CCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHH
T ss_pred CCcceehHHHHHHHHHhhhcCC-----CCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHH
Confidence 3566789999999998864321 014689999999995 99999999765431 245668999
Q ss_pred HHHHHHcCCC-----CCCcHHHHHHHHHHHhcccC
Q 046854 99 ISGLVAAEKT-----YSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 99 l~aL~~~g~~-----~~~~~~v~~a~~~L~~~Q~~ 128 (145)
+.+|...|.. +...+.+++|++||.+++..
T Consensus 400 l~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 400 LISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp HHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhcccccccCcccchHHHHHHHHHHHHhhhc
Confidence 9999888642 13467899999999998754
No 30
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.48 E-value=3.6e-07 Score=83.74 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCCccccCC------cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcCC
Q 046854 62 VNNFIINAVKFIEDLQKPDGSWYGRWG------VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 62 i~~~i~ka~~~L~~~Q~~dG~w~~~~g------~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
....|+++++||+++|++||+|+ .|+ ....+.|+.++.+|..+... ..+...+++|++||++.|++||+|.+
T Consensus 981 a~~~i~~g~~~ll~~q~~dGgf~-~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~ 1059 (1451)
T 4acq_A 981 AIGYLNTGYQRQLNYKHYDGSYS-TFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRS 1059 (1451)
T ss_dssp HHHHHHHHHHHHGGGBCTTSCBC-SSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECC
T ss_pred HHHHHHHHHHHHHhhcCCCCCee-eccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccc
Confidence 34568899999999999999995 453 35688999999999987532 24678999999999999999999975
Q ss_pred CC
Q 046854 135 SY 136 (145)
Q Consensus 135 ~~ 136 (145)
..
T Consensus 1060 ~g 1061 (1451)
T 4acq_A 1060 SG 1061 (1451)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 31
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.36 E-value=1.1e-06 Score=79.76 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC-C-CCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 61 EVNNFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT-Y-SNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~-~-~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
.+...+++++++|+++|++||||+. |. ..+.+.|+.++.+|..+... . .+...++++++||++.|.+||+|...
T Consensus 869 ~~~~~i~~g~~rll~~q~~dGgf~~-f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 869 KATNLLRQGYQNQMRYRQTDGSFGL-WETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHHHHHHHHHHGGGBCTTSCBCS-SSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCeec-cCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 4556789999999999999999954 42 35788899999999887322 1 34688999999999999999999654
No 32
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.34 E-value=3.7e-06 Score=73.92 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHh-cccCCCCcCCC
Q 046854 63 NNFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLN-IQCGDGGWGES 135 (145)
Q Consensus 63 ~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~-~Q~~dGgwg~~ 135 (145)
.+.|++++++|+..|++||||+ .|+ ....+.|+.++..|..+... ......+++|++||++ .|.+||+|.+.
T Consensus 298 ~~~i~~g~~rll~~Q~~DGsfs-~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~ 373 (915)
T 2hr0_B 298 LELIKKGYTQQLAFRQPSSAFA-AFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQED 373 (915)
T ss_dssp HHHHHHHHHHHGGGCCTTTCCB-SSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHhhcCCCCcc-ccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccC
Confidence 3578899999999999999995 354 35688999999999987522 2356889999999995 99999999654
No 33
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.13 E-value=9.4e-06 Score=65.52 Aligned_cols=86 Identities=15% Similarity=0.025 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCC---CCCcHH
Q 046854 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKT---YSNCLP 114 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~---~~~~~~ 114 (145)
...+.++.||+..+...+ .+.+..|+..|+.++-+.+.+ .++..|++|++||..++.. +...+.
T Consensus 137 Yq~sL~vLALC~~g~~v~-----------~~~v~~Ll~~~~~~~~~~g~~--~sVDT~AMA~lAL~C~~~~~~~~~~~~~ 203 (414)
T 2bb6_A 137 YQYSLGILALCVHQKRVH-----------DSVVGKLLYAVEHKPHLLQDH--VSVDTMAMAGMAFSCLELSNLNPKQRNR 203 (414)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------HHHHHHHHHHHHSSSCSCCTT--THHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHHHHHHHHHHcCCCcc-----------HHHHHHHHHHhhccCcCCCCc--ccccHHHHHHHHHHHHhhcCCCcchHHH
Confidence 455666777766664332 445666666665432222222 3577899999999988653 123567
Q ss_pred HHHHH----HHHHhcccCCCCcCCCC
Q 046854 115 IRKAT----DFLLNIQCGDGGWGESY 136 (145)
Q Consensus 115 v~~a~----~~L~~~Q~~dGgwg~~~ 136 (145)
+++|+ ++|++.|++||+||...
T Consensus 204 i~~al~~l~~~l~~~Q~~dG~FGN~~ 229 (414)
T 2bb6_A 204 INLALKRVQEKILKAQTPEGYFGNVY 229 (414)
T ss_dssp HHHHHHHHHHHHHHTBCTTSCBSSTT
T ss_pred HHHHHHHHHHHHHHhhcCCCCccchh
Confidence 88888 77778899999999543
No 34
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.12 E-value=4.2e-05 Score=65.87 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 62 VNNFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 62 i~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
....++++++-|++.|++||+|+ -|+ .+.++.|+.++..|..+... ..+...+.+++.||+++|.+||.|.+...
T Consensus 366 a~~~l~~gyqrll~~q~~DGsfs-~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~ 443 (767)
T 4fxk_B 366 AVDLIQKGYMRIQQFRKADGSYA-AWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCP 443 (767)
T ss_dssp HHHHHHHHHHHHTTTBCTTSCBB-SSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSC
T ss_pred HHHHHHHHHHHHHHhhcCCCCcc-cCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcch
Confidence 33458889999999999999995 454 35788999999999987432 24567899999999999999999976543
No 35
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.03 E-value=3e-05 Score=66.78 Aligned_cols=86 Identities=21% Similarity=0.131 Sum_probs=59.2
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc---------CC----cchhhHHHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR---------WG----VCFIYSTWWAISG 101 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~---------~g----~~~~~~T~~al~a 101 (145)
++.-.|++++..|..+.+... .....+.+++.||+..|.+||.|... .+ ......|++++.+
T Consensus 395 ~s~wLTAyV~~~l~~A~~~i~-----id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvlia 469 (767)
T 4fxk_B 395 SSTWLTAFVLKVLSLAQEQVG-----GSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIA 469 (767)
T ss_dssp BCHHHHHHHHHHHHHTCSSSS-----CCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhcC-----cchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHH
Confidence 456789999999998865321 11356889999999999999999531 01 1235578999999
Q ss_pred HHHcCCCCC----------CcHHHHHHHHHHHhc
Q 046854 102 LVAAEKTYS----------NCLPIRKATDFLLNI 125 (145)
Q Consensus 102 L~~~g~~~~----------~~~~v~~a~~~L~~~ 125 (145)
|...+.... ....+.||++||.+.
T Consensus 470 L~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~ 503 (767)
T 4fxk_B 470 LHHGLAVFQDEGAEPLKQRVEASISKANSFLGEK 503 (767)
T ss_dssp HHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccccchhhhhHhHHHHHHHHHHHHHHHH
Confidence 987644311 124577888887554
No 36
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.93 E-value=7.3e-05 Score=69.37 Aligned_cols=88 Identities=27% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHH-hCCCCCCcccc---C-----C-c-----chhhHHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIED-LQKPDGSWYGR---W-----G-V-----CFIYSTWWA 98 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~-~Q~~dG~w~~~---~-----g-~-----~~~~~T~~a 98 (145)
.++.-.|++++..|..+.+... .-+..+.++++||.+ .|++||.|... + | . .....|+++
T Consensus 1072 ~~s~wLTAyv~~~l~~A~~~~~-----v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyv 1146 (1661)
T 2b39_A 1072 PPSTWLTAYVVKVFALAANLIA-----IDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFV 1146 (1661)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSC-----CCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHH
T ss_pred CCchhhhHHHHHHHHhhhhccc-----CCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHH
Confidence 4567789999999999875421 014678999999995 99999999531 0 1 1 144568999
Q ss_pred HHHHHHcCCC-----CCCcHHHHHHHHHHHhcc
Q 046854 99 ISGLVAAEKT-----YSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 99 l~aL~~~g~~-----~~~~~~v~~a~~~L~~~Q 126 (145)
+.+|...|.. +.....+++|++||.++.
T Consensus 1147 l~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~ 1179 (1661)
T 2b39_A 1147 LIALHEAKDICEAQVNSLGRSIAKAGDFLENHY 1179 (1661)
T ss_dssp HHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccccCcchhHHHHHHHHHHHHhh
Confidence 9999887542 124567889999998763
No 37
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.90 E-value=5.8e-05 Score=70.07 Aligned_cols=87 Identities=24% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHH-hCCCCCCccccC--------Cc-------chhhHHHH
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIED-LQKPDGSWYGRW--------GV-------CFIYSTWW 97 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~-~Q~~dG~w~~~~--------g~-------~~~~~T~~ 97 (145)
.++.-.|++++..|..+.+...- -+..+.++++||.+ .|++||.|.... |. .+...|+.
T Consensus 1073 ~~s~wLTAyv~~~l~~A~~~~~v-----~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAy 1147 (1676)
T 3cu7_A 1073 SASTWLTAFALRVLGQVNKYVEQ-----NQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAF 1147 (1676)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCC-----CHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEeHHHHHHHHHHHhcccC-----CHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHH
Confidence 45677899999999998754210 14678999999999 999999985311 11 13456788
Q ss_pred HHHHHHHcCCC---CCCcHHHHHHHHHHHhc
Q 046854 98 AISGLVAAEKT---YSNCLPIRKATDFLLNI 125 (145)
Q Consensus 98 al~aL~~~g~~---~~~~~~v~~a~~~L~~~ 125 (145)
++.+|...+.. +.....+.+|++||.++
T Consensus 1148 vl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A 1148 TVIGIRKAFDICPLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp HHHHHHHTGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCcccHHHHHHHHHHHHHh
Confidence 89999877532 01245667777777654
No 38
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.64 E-value=7.1e-06 Score=75.98 Aligned_cols=86 Identities=24% Similarity=0.316 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhh-HHHHHHHHHHHHH-hCCCCCCccccC--------C-----cchhhHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEV-NNFIINAVKFIED-LQKPDGSWYGRW--------G-----VCFIYSTWWAI 99 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i-~~~i~ka~~~L~~-~Q~~dG~w~~~~--------g-----~~~~~~T~~al 99 (145)
++.=.|++++..|+...+... .| +..+.++++||.+ +|++||+|.... | ..++..|++++
T Consensus 1057 ~stWLTAyV~k~f~~A~~~i~-----~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vl 1131 (1642)
T 3prx_B 1057 SSSWLTAYVVKVFAMAAKMVA-----GISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFIL 1131 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccHHHHHHHHHHHHhhcc-----CCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHH
Confidence 455579999999988765321 12 2578999999998 899999995421 1 12456799999
Q ss_pred HHHHHcCCC-----CCCcHHHHHHHHHHHhc
Q 046854 100 SGLVAAEKT-----YSNCLPIRKATDFLLNI 125 (145)
Q Consensus 100 ~aL~~~g~~-----~~~~~~v~~a~~~L~~~ 125 (145)
.||...+.. ......++||+.||.+.
T Consensus 1132 iaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1132 VALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp -------------------------------
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 999887642 12356899999999865
No 39
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.61 E-value=0.00069 Score=62.94 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHh-cccCCCCcCCC
Q 046854 62 VNNFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLN-IQCGDGGWGES 135 (145)
Q Consensus 62 i~~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~-~Q~~dGgwg~~ 135 (145)
....|+.++.-+++.|++||+|+ -|+ ..+++.|+.++..|..+... ..+...+.+|++||.+ +|.+||.|.+.
T Consensus 1044 ~~~~i~~g~~r~l~~q~~dGsfs-~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1044 SLELIRKGYTQQLAFRQKSSAYA-AFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp HHHHHHHHHHHHHTTBCTTSCBC-SSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHhhcCCCCcc-ccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccc
Confidence 33467888899999999999995 354 35788999999999877432 2457889999999995 99999999754
No 40
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.57 E-value=8.1e-05 Score=59.81 Aligned_cols=79 Identities=9% Similarity=-0.063 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCC---CC---C--
Q 046854 39 CTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEK---TY---S-- 110 (145)
Q Consensus 39 ~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~---~~---~-- 110 (145)
.-+.++.||+..+.. .-.+.+.-|+..|+.||++. ++..+++|++||..+.. .. .
T Consensus 116 q~sL~vLALC~~~~~-----------v~~~~v~kLl~~~~~~g~~~------sVDT~AMa~LAL~C~~~~~~~~~~~~~~ 178 (399)
T 2pmv_A 116 GPSLAILALCQKNSE-----------ATLPIAVRFAKTLLANSSPF------NVDTGAMATLALTCMYNKIPVGSEEGYR 178 (399)
T ss_dssp HHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHCCSCC------CHHHHHHHHHHHHHHHTBCCTTCCSSHH
T ss_pred hHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCCcc------cchHHHHHHHHHHHHhhccccccchhhH
Confidence 334555555555432 22556666666666776442 46689999999987755 21 1
Q ss_pred --CcHHHHHHHHHHHhcccCCCCcCC
Q 046854 111 --NCLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 111 --~~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
....+++++.+|++.|++||+||.
T Consensus 179 ~~i~~ai~~~~~~l~~~q~~dG~fGn 204 (399)
T 2pmv_A 179 SLFGQVLKDIVEKISMKIKDNGIIGD 204 (399)
T ss_dssp HHHHHHHHHHHHHHTTSBCTTSCBSS
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 256788888999999999999994
No 41
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.41 E-value=0.00067 Score=63.08 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCC--cchhhHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHh-cccCCCCcCCCC
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWG--VCFIYSTWWAISGLVAAEKT-YSNCLPIRKATDFLLN-IQCGDGGWGESY 136 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g--~~~~~~T~~al~aL~~~g~~-~~~~~~v~~a~~~L~~-~Q~~dGgwg~~~ 136 (145)
..++.+++-+++.|++||+|+ -|+ ..+++.|+.++..|..+... ......+.+|++||.+ +|.+||.|.+..
T Consensus 1047 ~~i~~g~~r~l~~q~~dGsfs-~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~ 1122 (1676)
T 3cu7_A 1047 KKLKEGMLSIMSYRNADYSYS-VWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENS 1122 (1676)
T ss_dssp HHHHHHHHHGGGGBCTTSCBC-SSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCS
T ss_pred HHHHHHHHHHhhccCCCCCcc-ccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCc
Confidence 356677777889999999995 353 35788999999999877421 2457889999999999 999999997643
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.38 E-value=2.5e-05 Score=72.46 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCccccCCc--chhhHHHHHHHHHHHcCCC-C-CCcHHHHHHHHHHHh-cccCCCCcCCCC
Q 046854 63 NNFIINAVKFIEDLQKPDGSWYGRWGV--CFIYSTWWAISGLVAAEKT-Y-SNCLPIRKATDFLLN-IQCGDGGWGESY 136 (145)
Q Consensus 63 ~~~i~ka~~~L~~~Q~~dG~w~~~~g~--~~~~~T~~al~aL~~~g~~-~-~~~~~v~~a~~~L~~-~Q~~dGgwg~~~ 136 (145)
...|++++.-++..|++||+|+ .|+. ..++.|++|+..|..+... . .+...+.++++||++ +|++||.|.+..
T Consensus 1029 ~~~i~~Gyqr~l~yq~~DGsfs-~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~ 1106 (1642)
T 3prx_B 1029 VNQIVTGYAQQMVYKKADHSYA-AFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENA 1106 (1642)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCee-cCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccc
Confidence 4467788888999999999995 4653 5678899999999877432 1 346789999999998 899999997544
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=97.31 E-value=0.00046 Score=59.34 Aligned_cols=79 Identities=22% Similarity=0.111 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc---chhhHHHHHHHHHHHcCCCCC
Q 046854 34 HDYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV---CFIYSTWWAISGLVAAEKTYS 110 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~---~~~~~T~~al~aL~~~g~~~~ 110 (145)
.+++..||++ || +-.. ++ .+.-.++++||+..|.+||+|+..-+. ...-.|..||.||...+..
T Consensus 31 S~S~YDTAWV--Am--vp~~-~~------~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~-- 97 (727)
T 3pya_A 31 TISAYDTAWV--AL--IDAG-DK------TPAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF-- 97 (727)
T ss_dssp CCCHHHHHHH--HT--CBCS-SS------SBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC--
T ss_pred cCcHHHhHHH--hh--ccCC-CC------CCCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC--
Confidence 4678889883 32 2111 11 122478899999999999999653211 1245799999999987765
Q ss_pred CcHHHHHHHHHHHhcc
Q 046854 111 NCLPIRKATDFLLNIQ 126 (145)
Q Consensus 111 ~~~~v~~a~~~L~~~Q 126 (145)
...++|++.||.+.-
T Consensus 98 -~~~i~rGl~fl~~nl 112 (727)
T 3pya_A 98 -PHQCNKGITFFRENI 112 (727)
T ss_dssp -HHHHHHHHHHHHHHG
T ss_pred -HHHHHHHHHHHHHHH
Confidence 468999999998753
No 44
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.28 E-value=0.00049 Score=59.57 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHHHhhhh-CCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCc---chhhHHHHHHHHHHHcCCCC
Q 046854 34 HDYVECTASALKAMTLFQKL-HPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV---CFIYSTWWAISGLVAAEKTY 109 (145)
Q Consensus 34 ~~~~~~T~~al~aL~~~~~~-~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~---~~~~~T~~al~aL~~~g~~~ 109 (145)
.+++..||++ || .... ..+.. .+.-.++++||+..|.+||+|+..-+. ..+-.|..||.||...+..
T Consensus 30 S~S~YDTAWV--am--vp~~~~~~~~----~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~- 100 (764)
T 3p5p_A 30 SPSAYDTAWV--AR--LATISSDGSE----KPRFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG- 100 (764)
T ss_dssp CCCHHHHHHH--HH--CEEECTTSCE----EESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC-
T ss_pred cCcHHHHHHH--Hh--CccccCCCCC----CCCChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC-
Confidence 4778889883 32 2221 00000 123478899999999999999642221 1345799999999998765
Q ss_pred CCcHHHHHHHHHHHhcc
Q 046854 110 SNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 110 ~~~~~v~~a~~~L~~~Q 126 (145)
...++|++.||.+.-
T Consensus 101 --~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 101 --HSQVQQGAEFIAENL 115 (764)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 478999999998764
No 45
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.26 E-value=0.00051 Score=59.85 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCCCCccccCCc---chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 046854 66 IINAVKFIEDLQKPDGSWYGRWGV---CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 66 i~ka~~~L~~~Q~~dG~w~~~~g~---~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
-.++++||+..|.+||+|+..-+. ..+-.|..||.||...+.. ...++|++.||.+.-
T Consensus 103 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 103 FPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNL 163 (817)
T ss_dssp SHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 478899999999999999643221 1244799999999998765 578999999998763
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.25 E-value=0.00043 Score=60.06 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCCCCccccC--Ccch-hhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 046854 65 FIINAVKFIEDLQKPDGSWYGRW--GVCF-IYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 65 ~i~ka~~~L~~~Q~~dG~w~~~~--g~~~-~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
.-.++++||+..|.+||+|+..- ...+ +-.|..||.||...+.. ...++|++.||.+.-
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQA 136 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHH
Confidence 34688999999999999996421 1112 55799999999998765 578999999998663
No 47
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=96.40 E-value=0.039 Score=43.85 Aligned_cols=98 Identities=11% Similarity=0.026 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhhh--CCc-c-chhhhHHHHHHHHHHHHHhCCCCCCccccCCc----chhhHHHHHHHHHHH---cCC
Q 046854 39 CTASALKAMTLFQKL--HPK-H-RKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV----CFIYSTWWAISGLVA---AEK 107 (145)
Q Consensus 39 ~T~~al~aL~~~~~~--~~~-~-~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~----~~~~~T~~al~aL~~---~g~ 107 (145)
..+.++.+|..+-+. .|. + ..+++.+.+++.+++|++.|.+||.|...... .++-+|++.+.+|.. .|.
T Consensus 234 G~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~ 313 (382)
T 3pmm_A 234 GNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRY 313 (382)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCC
Confidence 456777777766543 232 1 22356678899999999999999999753322 234467777777644 344
Q ss_pred C-CCCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 108 T-YSNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 108 ~-~~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
. ....+.++|+++.|+++.++||-.+..+
T Consensus 314 l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v~ 343 (382)
T 3pmm_A 314 VGQHYAGVAEKAIRGIVQNISPQGELLQTS 343 (382)
T ss_dssp SCGGGHHHHHHHHHHHHHTBCTTSCBCSCB
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCCCEeCee
Confidence 3 2357789999999999999999776543
No 48
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=96.11 E-value=0.048 Score=44.38 Aligned_cols=97 Identities=12% Similarity=0.047 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhhhCCcc--chhhhHHHHHHHHHHHHHhCCCCCCccccCCc----chhhHHHHHHHHHHH---cCCCC
Q 046854 39 CTASALKAMTLFQKLHPKH--RKNEVNNFIINAVKFIEDLQKPDGSWYGRWGV----CFIYSTWWAISGLVA---AEKTY 109 (145)
Q Consensus 39 ~T~~al~aL~~~~~~~~~~--~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~----~~~~~T~~al~aL~~---~g~~~ 109 (145)
..+.++.+|..+-+..|.. ...++....++.++.|++.|.++|.|..-... .++-+|++.+.+|.. .|..+
T Consensus 267 GnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld 346 (445)
T 3k11_A 267 ANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWID 346 (445)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSC
T ss_pred cchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 5677788887766654431 22456678899999999999999999753222 234467776666643 35542
Q ss_pred --CCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 110 --SNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 110 --~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
...+.++|+++.|+++-++||--+..
T Consensus 347 ~~~Y~~~A~ka~~~L~~~i~~dG~l~~v 374 (445)
T 3k11_A 347 AIAYGPVAQLGWHAVAGKINEEGQVEGT 374 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEece
Confidence 13578899999999999999965433
No 49
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=95.96 E-value=0.0037 Score=54.27 Aligned_cols=42 Identities=26% Similarity=0.532 Sum_probs=29.9
Q ss_pred chhhHHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 90 CFIYSTWWAISGLVA-AEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 90 ~~~~~T~~al~aL~~-~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+.+|.||++ ||.- .+. ...+...++++||++.|.+||+||..
T Consensus 54 ~S~YDTAWV--amvp~~~~--~~~p~Fp~~~~wil~nQ~~DGsWg~~ 96 (785)
T 3s9v_A 54 PSAYDTAWV--ARIPAVDG--SDNPHFPETVEWILQNQLKDGSWGEG 96 (785)
T ss_dssp CCHHHHHHH--TTSBCTTS--CSSBSSHHHHHHHHHCCCTTSCCSCS
T ss_pred CcHHHhhHH--hccccCCC--CCCCCchHHHHHHHHccCCCCCCCCC
Confidence 458899994 3321 111 12455678999999999999999964
No 50
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=95.89 E-value=0.0042 Score=54.12 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCC---CCCCccccCCcchhhHHHHHHHHHHHc-CCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 66 IINAVKFIEDLQK---PDGSWYGRWGVCFIYSTWWAISGLVAA-EKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 66 i~ka~~~L~~~Q~---~dG~w~~~~g~~~~~~T~~al~aL~~~-g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+++.++-++...+ .||.+ +... +.+|.||++ ||.-. +. ...+...++++||++.|.+||+||..
T Consensus 56 ~~~Lie~VK~~l~~~~~~g~~-g~~S-~S~YDTAWV--Amvp~~~~--~~~p~Fp~~~~wil~nQ~~DGsWg~~ 123 (817)
T 3sdr_A 56 AEVLVSEIKAMLNPAITGDGE-SMIT-PSAYDTAWV--ARVPAIDG--SARPQFPQTVDWILKNQLKDGSWGIQ 123 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSSCC-CCCC-CCHHHHHHH--HTCBCTTS--CSSBSSHHHHHHHHHCCCTTSCCSCT
T ss_pred HHHHHHHHHHHhccccCCCCC-cccc-cCHHHhhHH--heeecCCC--CCCCCchHHHHHHHHccCCCCCCCCC
Confidence 3444444444433 45622 2112 458899994 33211 11 12455678999999999999999964
No 51
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=95.67 E-value=0.0046 Score=53.52 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=30.0
Q ss_pred chhhHHHHHHHHHHHcC-CCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 90 CFIYSTWWAISGLVAAE-KTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 90 ~~~~~T~~al~aL~~~g-~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+.+|.||++ ||.-.- ......+...++++||++.|.+||+||..
T Consensus 31 ~S~YDTAWV--amvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~ 75 (764)
T 3p5p_A 31 PSAYDTAWV--ARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIE 75 (764)
T ss_dssp CCHHHHHHH--HHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCT
T ss_pred CcHHHHHHH--HhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCC
Confidence 458899994 343111 01012345678999999999999999964
No 52
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=95.22 E-value=0.24 Score=38.97 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhhCCcc--chhhhHHHHHHHHHHHHHhCCC-CCCccccCC-----c--chhhHHHHHHHHHHHc---
Q 046854 39 CTASALKAMTLFQKLHPKH--RKNEVNNFIINAVKFIEDLQKP-DGSWYGRWG-----V--CFIYSTWWAISGLVAA--- 105 (145)
Q Consensus 39 ~T~~al~aL~~~~~~~~~~--~~~~i~~~i~ka~~~L~~~Q~~-dG~w~~~~g-----~--~~~~~T~~al~aL~~~--- 105 (145)
..+.++.+|..+.+..|.. ..+++.+..++.+++|+++|.| ||.|..-.. . .++-+|++.+.+|...
T Consensus 214 g~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~ 293 (373)
T 1nc5_A 214 SIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINK 293 (373)
T ss_dssp HHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHC
Confidence 5567888887776654431 2234667789999999999997 999974211 1 2344566666666543
Q ss_pred CCC-CCCcHHHHHHHHHHHhc---ccCCCC
Q 046854 106 EKT-YSNCLPIRKATDFLLNI---QCGDGG 131 (145)
Q Consensus 106 g~~-~~~~~~v~~a~~~L~~~---Q~~dGg 131 (145)
|.. ....+.++|+++.|.+. .++||-
T Consensus 294 g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~ 323 (373)
T 1nc5_A 294 GYLDRAYETTLLKAYQGLIQHKTETSEDGA 323 (373)
T ss_dssp TSSCGGGHHHHHHHHHHHHHHHEEECTTSC
T ss_pred CCCcHHHHHHHHHHHHHHHHhceeECCCCC
Confidence 433 24678899999999884 578883
No 53
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.04 E-value=0.029 Score=48.31 Aligned_cols=41 Identities=27% Similarity=0.558 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCC
Q 046854 90 CFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGES 135 (145)
Q Consensus 90 ~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~ 135 (145)
+.+|.|+++ ||.-. . ...+...++++||++.|.+||+||..
T Consensus 32 ~S~YDTAWV--Amvp~--~-~~~p~Fp~~~~wil~nQ~~DGsWG~~ 72 (727)
T 3pya_A 32 ISAYDTAWV--ALIDA--G-DKTPAFPSAVKWIAENQLSDGSWGDA 72 (727)
T ss_dssp CCHHHHHHH--HTCBC--S-SSSBSCHHHHHHHHHTCCTTSCCSCS
T ss_pred CcHHHhHHH--hhccC--C-CCCCCCHHHHHHHHhcCCCCCCCCCC
Confidence 458899994 34321 1 12344678999999999999999964
No 54
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=93.36 E-value=0.42 Score=37.18 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHHhhhh-CCccchhhhHHHHHHHHHHHHHh-CCCCCCccccC---C-----cchhhHHHHHHHHHHHc
Q 046854 36 YVECTASALKAMTLFQKL-HPKHRKNEVNNFIINAVKFIEDL-QKPDGSWYGRW---G-----VCFIYSTWWAISGLVAA 105 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~-~~~~~~~~i~~~i~ka~~~L~~~-Q~~dG~w~~~~---g-----~~~~~~T~~al~aL~~~ 105 (145)
.+...++.|.+++..... .. .+.+.++++++++||++. +.++|+|.... | ....+.-++++.+|+.+
T Consensus 51 ~l~~nar~i~~~a~a~~~~~~---~~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~ 127 (388)
T 2gz6_A 51 FIWLQNRQVWTFSMLCNQLEK---RENWLKIARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQY 127 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHH
Confidence 345688888888876654 21 235667889999999998 67789986532 1 23567788888888764
Q ss_pred CCC---CCCcHHHHHHHHHHHhcccC-CCCc
Q 046854 106 EKT---YSNCLPIRKATDFLLNIQCG-DGGW 132 (145)
Q Consensus 106 g~~---~~~~~~v~~a~~~L~~~Q~~-dGgw 132 (145)
... +.......+..++|++.... +|.|
T Consensus 128 y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~~ 158 (388)
T 2gz6_A 128 ALASGEEWAKDVAMQAYNNVLRRKDNPKGKY 158 (388)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHTC--------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 321 12334566777888887643 3443
No 55
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=91.12 E-value=1.9 Score=33.92 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHh-CCCC-CCccccC--Cc-----chhhHHHHHHHHHHHcCC
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDL-QKPD-GSWYGRW--GV-----CFIYSTWWAISGLVAAEK 107 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~-Q~~d-G~w~~~~--g~-----~~~~~T~~al~aL~~~g~ 107 (145)
+-.+++.|.+++....... .+...++++++++||++. ..++ |+|.... |. .+.|.-++++.||+.+..
T Consensus 51 l~~n~r~i~~~a~a~~~~g---~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~ 127 (402)
T 3gt5_A 51 LVSSTRFVFNYAMAYLQFG---TAEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLK 127 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC---ChHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHH
Confidence 4467888888877654321 234567889999999985 3456 8886432 21 356778888888876422
Q ss_pred C--CCCcHHHHHHHHHHHhcc-cCC-CCcC
Q 046854 108 T--YSNCLPIRKATDFLLNIQ-CGD-GGWG 133 (145)
Q Consensus 108 ~--~~~~~~v~~a~~~L~~~Q-~~d-Ggwg 133 (145)
. +......++..++|.+.- .++ |++-
T Consensus 128 tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~ 157 (402)
T 3gt5_A 128 VGIKQAREWMDETWCLLERHFWDAEYGLYK 157 (402)
T ss_dssp TTCTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred hCChhHHHHHHHHHHHHHHHhcCCcCCCch
Confidence 2 134456667778888763 443 5554
No 56
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.63 E-value=1.8 Score=35.11 Aligned_cols=101 Identities=13% Similarity=0.243 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCC-CCCccccCC--------cchhhHHHHHHHHHHHcCC
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKP-DGSWYGRWG--------VCFIYSTWWAISGLVAAEK 107 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~-dG~w~~~~g--------~~~~~~T~~al~aL~~~g~ 107 (145)
+|+-++++..|+.+++...+.+..-++.+++....+..-++.+ +|-|...|. ....++.++++.+|..+-.
T Consensus 201 iD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~ 280 (445)
T 3k11_A 201 LDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLD 280 (445)
T ss_dssp THHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHH
Confidence 5677899999999887642211002445555555555555644 577754331 1346788898888876521
Q ss_pred -CCC-------CcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 108 -TYS-------NCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 108 -~~~-------~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
.+. .....++.++.|+++|.+||-|-....
T Consensus 281 ~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld 318 (445)
T 3k11_A 281 VLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLD 318 (445)
T ss_dssp HSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTT
T ss_pred hcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccC
Confidence 111 125678899999999999999986543
No 57
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=90.24 E-value=1.8 Score=33.76 Aligned_cols=95 Identities=8% Similarity=-0.051 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHh-CCCCC--CccccC---C-----cchhhHHHHHHHHHHHc
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDL-QKPDG--SWYGRW---G-----VCFIYSTWWAISGLVAA 105 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~-Q~~dG--~w~~~~---g-----~~~~~~T~~al~aL~~~ 105 (145)
+..+++.|.+++.+....+....+++.++++++++||++. ..++| +|.... + ....+.-++++.++..+
T Consensus 55 l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~ 134 (402)
T 1fp3_A 55 VWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNEL 134 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHH
Confidence 4556777777776554320001234567899999999998 55554 775422 1 12345566777777644
Q ss_pred ----CCCCCCcHHHHHHHHHHHhcc--cCCCCc
Q 046854 106 ----EKTYSNCLPIRKATDFLLNIQ--CGDGGW 132 (145)
Q Consensus 106 ----g~~~~~~~~v~~a~~~L~~~Q--~~dGgw 132 (145)
|.. .......+.++++++.- .++|+|
T Consensus 135 ~~atgd~-~~~~~A~~l~~~~~~~~~d~~~G~f 166 (402)
T 1fp3_A 135 WRVTAEA-RYQSEAVDMMDQIVHWVREDPSGLG 166 (402)
T ss_dssp HHHHCCH-HHHHHHHHHHHHHHHHHHTCGGGGC
T ss_pred HHHhCCH-HHHHHHHHHHHHHHHHhccCCCccc
Confidence 322 23445566777777665 456766
No 58
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=89.87 E-value=0.39 Score=28.29 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG 130 (145)
.-+|..||.+.+-. ++||++||-++..+.-
T Consensus 33 ~~qA~kALKat~~N------vErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 33 YECVLRAMKKKGEN------IEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHHCSC------HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCCCC
Confidence 45778888887765 8999999999977643
No 59
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=89.64 E-value=2.5 Score=33.29 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCC-CCCccccC---------CcchhhHHHHHHHHHHHcC
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKP-DGSWYGRW---------GVCFIYSTWWAISGLVAAE 106 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~-dG~w~~~~---------g~~~~~~T~~al~aL~~~g 106 (145)
+|...+++..|+.+.+...+ ..-++.+++....+....+.+ +|.|.-.| ...-.++.++++.+|..+-
T Consensus 169 iDgl~M~~p~La~~~~~tgd--~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l 246 (382)
T 3pmm_A 169 DDTLMMTVLPLAKIGKLLNR--PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFL 246 (382)
T ss_dssp TTHHHHTHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHH
T ss_pred ecchhhhHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHH
Confidence 35667888888888766422 122455666666677777754 68875432 1134678889888887542
Q ss_pred ----CCCC------CcHHHHHHHHHHHhcccCCCCcCCCCC
Q 046854 107 ----KTYS------NCLPIRKATDFLLNIQCGDGGWGESYL 137 (145)
Q Consensus 107 ----~~~~------~~~~v~~a~~~L~~~Q~~dGgwg~~~~ 137 (145)
.+.. .....++.+++|+++|.+||-|-....
T Consensus 247 ~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d 287 (382)
T 3pmm_A 247 ELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLD 287 (382)
T ss_dssp HHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTT
T ss_pred HhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccC
Confidence 2211 124577889999999999999985543
No 60
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=89.57 E-value=1.8 Score=38.61 Aligned_cols=72 Identities=14% Similarity=0.326 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhCCC--CCCcccc----CC-------------cchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 046854 61 EVNNFIINAVKFIEDLQKP--DGSWYGR----WG-------------VCFIYSTWWAISGLVAAEKTYSNCLPIRKATDF 121 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~--dG~w~~~----~g-------------~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~ 121 (145)
+..+.+++++--|+.++.+ .|+.-+. |. -+..+.+++++.+|..+|.. ...++.++|
T Consensus 281 ~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~~----e~A~~~l~~ 356 (1020)
T 1ulv_A 281 ALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDE----EAAARGVEW 356 (1020)
T ss_dssp HHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCCH----HHHHHHHHH
Confidence 4566788888888888875 3666332 21 13457788999999988864 668899999
Q ss_pred HHhcc-cCCCCcCCCC
Q 046854 122 LLNIQ-CGDGGWGESY 136 (145)
Q Consensus 122 L~~~Q-~~dGgwg~~~ 136 (145)
|.+.| +++|.|-..+
T Consensus 357 L~~~Q~~~~G~~~~~y 372 (1020)
T 1ulv_A 357 LFTYQQQPDGHFPQTS 372 (1020)
T ss_dssp HHHHTCCTTSCCCSCB
T ss_pred HHHHhcCCCCCeeeEE
Confidence 99999 8999885433
No 61
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.94 E-value=0.56 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC
Q 046854 97 WAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 97 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG 130 (145)
.++.||.+.+-+ |++|++||++.+..+|
T Consensus 36 an~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 36 ANLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 557888887765 8899999999987655
No 62
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=88.92 E-value=0.81 Score=38.92 Aligned_cols=69 Identities=14% Similarity=0.370 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHhCCC--CCCcccc----CC------------cchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q 046854 62 VNNFIINAVKFIEDLQKP--DGSWYGR----WG------------VCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLL 123 (145)
Q Consensus 62 i~~~i~ka~~~L~~~Q~~--dG~w~~~----~g------------~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~ 123 (145)
..+.+++++.-|+.++.+ .|.+-+. |. -+..+..++++++|..+|.. ...++.++||.
T Consensus 294 ~~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~~----~~a~~~l~~l~ 369 (684)
T 1lf6_A 294 ANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDV----DSANRSLDYLA 369 (684)
T ss_dssp CCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCCH----HHHHHHHHHHH
Confidence 456778888888888763 6777321 21 13346788888899888854 67889999999
Q ss_pred hcccCCCCcCC
Q 046854 124 NIQCGDGGWGE 134 (145)
Q Consensus 124 ~~Q~~dGgwg~ 134 (145)
+.|.++|+|-.
T Consensus 370 ~~q~~~G~~~~ 380 (684)
T 1lf6_A 370 KVVKDNGMIPQ 380 (684)
T ss_dssp HHHHHHSSCCS
T ss_pred hhcCCCCCccc
Confidence 99999999853
No 63
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=88.61 E-value=0.72 Score=39.24 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCcccc--------CCcchhhHHHHHHHHHHHcCCCCC
Q 046854 39 CTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGR--------WGVCFIYSTWWAISGLVAAEKTYS 110 (145)
Q Consensus 39 ~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~--------~g~~~~~~T~~al~aL~~~g~~~~ 110 (145)
..+.++.+|..++. .+..++.++||.+.|.++|.|... |+......++..|.++..+....
T Consensus 344 D~~~~~~al~~~G~----------~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g- 412 (684)
T 1lf6_A 344 DLYHVANAFIAAGD----------VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD- 412 (684)
T ss_dssp HHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG-
T ss_pred HHHHHHHHHHHcCC----------HHHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC-
Confidence 34556666666542 134688999999999999988542 33323445666666665543321
Q ss_pred CcHH-HHHHHHHHHhcc
Q 046854 111 NCLP-IRKATDFLLNIQ 126 (145)
Q Consensus 111 ~~~~-v~~a~~~L~~~Q 126 (145)
..+. ++++++|+.+.-
T Consensus 413 ~~~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 413 LYDSLVKPLADFIIKIG 429 (684)
T ss_dssp GTTTTHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhC
Confidence 3566 999999999874
No 64
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=86.16 E-value=4.5 Score=31.51 Aligned_cols=96 Identities=10% Similarity=0.165 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCC-CCCccccCC-------------c---chhhHHHHHH
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKP-DGSWYGRWG-------------V---CFIYSTWWAI 99 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~-dG~w~~~~g-------------~---~~~~~T~~al 99 (145)
.|...+++..|+.+.+...+. .-++.+++....++...+.+ +|-|...|. . .-.++.++++
T Consensus 142 ~D~l~m~~p~L~~l~~~tgd~--~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~WaRg~gW~~ 219 (373)
T 1nc5_A 142 LDGLYMGGPFALKYANLKQET--ELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYV 219 (373)
T ss_dssp THHHHHHHHHHHHHHHHHTCT--HHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCcccchHhHHH
Confidence 566678888888887643211 11233333333444445544 677743221 1 2256888899
Q ss_pred HHHHHcC-CCCC-------CcHHHHHHHHHHHhcccC-CCCcCC
Q 046854 100 SGLVAAE-KTYS-------NCLPIRKATDFLLNIQCG-DGGWGE 134 (145)
Q Consensus 100 ~aL~~~g-~~~~-------~~~~v~~a~~~L~~~Q~~-dGgwg~ 134 (145)
.+|..+- ..|. .....++.+++|+++|.+ ||-|-.
T Consensus 220 ~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~ 263 (373)
T 1nc5_A 220 MSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ 263 (373)
T ss_dssp HHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS
T ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee
Confidence 9987653 2222 134567788999999997 999974
No 65
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.61 E-value=0.48 Score=31.49 Aligned_cols=61 Identities=7% Similarity=-0.089 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCC-CCCCcccc--------C--CcchhhHHHHHHHHHHHcCCCC--------CCcHHHHHHHHHHHhcc
Q 046854 66 IINAVKFIEDLQK-PDGSWYGR--------W--GVCFIYSTWWAISGLVAAEKTY--------SNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 66 i~ka~~~L~~~Q~-~dG~w~~~--------~--g~~~~~~T~~al~aL~~~g~~~--------~~~~~v~~a~~~L~~~Q 126 (145)
++++++||..++. .+-++... . .......--..+..|..+|... ...-+++||++||.++-
T Consensus 36 ~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 36 IEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 4789999999873 22222110 0 0000111224577777788763 13456889999998864
No 66
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=83.74 E-value=1.5 Score=26.74 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG 130 (145)
-.++.||.+.+-+ +++|++||++.+-++-
T Consensus 45 ~~~~~AL~~t~Gn------ve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 45 DANLQALVATDGD------IHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHHTTSC------HHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhCCCCCC
Confidence 3568888887765 8899999999876653
No 67
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=81.88 E-value=4.4 Score=36.19 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhC-CCCCCcccc--------CCcchhhHHHHHHHHHHHcCCC
Q 046854 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQ-KPDGSWYGR--------WGVCFIYSTWWAISGLVAAEKT 108 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q-~~dG~w~~~--------~g~~~~~~T~~al~aL~~~g~~ 108 (145)
-.++.++.+|..++. .+..++.++||.+.| +++|.|... |+......++..|.++..+...
T Consensus 332 RDaa~t~~all~~G~----------~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~~ 401 (1020)
T 1ulv_A 332 RDMYQSVTALLAAGD----------EEAAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRT 401 (1020)
T ss_dssp HHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhcCCCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHhc
Confidence 456666677766653 134688999999999 899988543 2211234567777777665332
Q ss_pred C-CCcH-HHHHHHHHHHhcc
Q 046854 109 Y-SNCL-PIRKATDFLLNIQ 126 (145)
Q Consensus 109 ~-~~~~-~v~~a~~~L~~~Q 126 (145)
. ...+ .++++++||.+.-
T Consensus 402 d~~~w~~~v~~al~~i~~~g 421 (1020)
T 1ulv_A 402 DAGFYRNELKPAADYLVAAG 421 (1020)
T ss_dssp CHHHHHHTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 1 1244 7999999999873
No 68
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.34 E-value=1.9 Score=26.11 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGD 129 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d 129 (145)
...|+.||...+-. +++|++||++.|.++
T Consensus 43 r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 43 RTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 44677888877654 889999999988764
No 69
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.23 E-value=2.2 Score=24.97 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dG 130 (145)
...|+.||.+.+-. +++|++||++.+.+.-
T Consensus 23 ~~~a~~AL~~~~~n------ve~A~e~L~~~~~~~~ 52 (63)
T 1wji_A 23 KEASRQALMDNGNN------LEAALNVLLTSNKQKP 52 (63)
T ss_dssp HHHHHHHHHHTTSC------HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCCcc
Confidence 34567888877643 8899999999876543
No 70
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=80.15 E-value=2.2 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 97 WAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 97 ~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
.++.||...+-+ +++|++||.+....
T Consensus 26 ~n~~AL~~~~Gd------v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 26 ANLQALIATGGD------VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCc
Confidence 457888877765 88999999987644
No 71
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.53 E-value=2.6 Score=24.67 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
...|..||.+.+- ..+++|++||++++..
T Consensus 33 ~~~a~~AL~~t~~-----~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 33 RARAQKALASTGG-----RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHHTTT-----SCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHcCC-----CCHHHHHHHHHhCCCC
Confidence 3466778877663 1388999999998754
No 72
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=79.00 E-value=29 Score=29.55 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhhhCCccchhhhHHHHHHHHHH----HHHhCCCCCCccccCCcchhhH------HHHHHHHHHHcCC--
Q 046854 40 TASALKAMTLFQKLHPKHRKNEVNNFIINAVKF----IEDLQKPDGSWYGRWGVCFIYS------TWWAISGLVAAEK-- 107 (145)
Q Consensus 40 T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~----L~~~Q~~dG~w~~~~g~~~~~~------T~~al~aL~~~g~-- 107 (145)
....+.+|..++-..|..+ +-++.+++|++. |..+-.+||++. ..+..|. ...+...+...|.
T Consensus 262 ~l~~~~aL~~agl~~pe~~--~~~~w~~~A~~~L~~el~~Qi~~DG~~~---E~Sp~Yh~~vL~~ll~~~~la~~~g~~~ 336 (702)
T 4fnv_A 262 LISQANALATAGTLMPEFK--NAEKWMNTGYQILSEEVQNQIMSDGWHK---EMSLHYHIGIVADFYEAMKLAEANQLSS 336 (702)
T ss_dssp HHHHHHHHHHHHHHCTTBT--THHHHHHHHHHHHHHHHHHSBCTTSCBT---TCCHHHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHHHHHHhhcCCCCccc---cCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3344455555555555321 112333444444 334456899873 3333332 1112222333454
Q ss_pred --CCCCcHHHHHHHHHHHhcccCCC-------CcCCCCCCCC
Q 046854 108 --TYSNCLPIRKATDFLLNIQCGDG-------GWGESYLSCP 140 (145)
Q Consensus 108 --~~~~~~~v~~a~~~L~~~Q~~dG-------gwg~~~~s~~ 140 (145)
++.....++|++.||+....+|| ......++..
T Consensus 337 ~~p~~~~~~L~km~~~l~~l~~PDG~~~g~~~~lp~fnDs~~ 378 (702)
T 4fnv_A 337 KLPSDFTEPLRKAAEVVMYFTYPNYFIKGSDNVVPMFNDSWS 378 (702)
T ss_dssp GSCTTTTHHHHHHHHHHHHTSCGGGGSCCSSCCSCCCSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCccccccccCccCCCCC
Confidence 22346789999999999999999 6655544443
No 73
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=78.89 E-value=2.1 Score=24.05 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
...++.||...+-+ +++|++||++.+
T Consensus 26 ~~~~~~AL~~t~gn------ve~Ave~L~~~~ 51 (53)
T 2knz_A 26 REANLQALIATGGD------INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHcC
Confidence 34667888877754 889999999875
No 74
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=78.88 E-value=7 Score=32.79 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=49.7
Q ss_pred HHHHHHHHHH----HhhhhCCccchhhhHHHHHHHHHHHHH---hC---CCCCCcc------------------ccCCc-
Q 046854 39 CTASALKAMT----LFQKLHPKHRKNEVNNFIINAVKFIED---LQ---KPDGSWY------------------GRWGV- 89 (145)
Q Consensus 39 ~T~~al~aL~----~~~~~~~~~~~~~i~~~i~ka~~~L~~---~Q---~~dG~w~------------------~~~g~- 89 (145)
..++++.+|. .++. .+..++..+||.. .| +++|.|. +.|+.
T Consensus 54 Daa~t~~aL~~~~~~~G~----------~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~~~w~~~ 123 (599)
T 2vn4_A 54 DSALVFKNLIDRFTETYD----------AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWGRP 123 (599)
T ss_dssp HHHHHHHHHHHHHHHSBC----------HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCCSCCSCC
T ss_pred hHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCccccCcCCCe
Confidence 4566666666 3332 2345778899974 67 8999884 23543
Q ss_pred -chhhH---HHHHHHHHH--HcCCC----CCCcHHHHHHHHHHHhcccC--CCCcCC
Q 046854 90 -CFIYS---TWWAISGLV--AAEKT----YSNCLPIRKATDFLLNIQCG--DGGWGE 134 (145)
Q Consensus 90 -~~~~~---T~~al~aL~--~~g~~----~~~~~~v~~a~~~L~~~Q~~--dGgwg~ 134 (145)
.+.++ +++.+.++. ..|.. ...++.|+++++||.+..++ .|=|.+
T Consensus 124 Q~D~~glr~~~~~~~~~~~~~~g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEe 180 (599)
T 2vn4_A 124 QRDGPALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEE 180 (599)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSC
T ss_pred eccccchhHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeee
Confidence 23322 444444332 22321 01468899999999998764 234543
No 75
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=78.85 E-value=3.2 Score=25.01 Aligned_cols=28 Identities=32% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
...|..||...+-. +++|++||++.+..
T Consensus 43 ~~~a~~AL~~t~~n------ve~Ave~L~~~~~d 70 (73)
T 1wiv_A 43 EDVARKALKASGGD------IEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHTTSC------HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHhCCCC
Confidence 45677888877643 88999999998754
No 76
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=77.69 E-value=4.1 Score=31.43 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=45.9
Q ss_pred HHHHHHHH-HHhCCCCCCccccCC--------cchhhHHHHHHHHHHHcCC----CCCCcHHHHHHHHHHHhc-ccCCCC
Q 046854 66 IINAVKFI-EDLQKPDGSWYGRWG--------VCFIYSTWWAISGLVAAEK----TYSNCLPIRKATDFLLNI-QCGDGG 131 (145)
Q Consensus 66 i~ka~~~L-~~~Q~~dG~w~~~~g--------~~~~~~T~~al~aL~~~g~----~~~~~~~v~~a~~~L~~~-Q~~dGg 131 (145)
+++++.|. ...+.+.|||..+.. +-..+..+..|.+++.+.. .+.....++++++||++. +.++||
T Consensus 17 ~~~~l~fw~~~~~D~~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~Gg 96 (388)
T 2gz6_A 17 LNDVLPFWENHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDEGN 96 (388)
T ss_dssp HHTHHHHHHHHCBCTTSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTTSC
T ss_pred HHhHHHHHHhcCCCCCCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 46788887 445666778654321 1235567777777766432 113456789999999998 677999
Q ss_pred cCCC
Q 046854 132 WGES 135 (145)
Q Consensus 132 wg~~ 135 (145)
|-..
T Consensus 97 ~~~~ 100 (388)
T 2gz6_A 97 WYFA 100 (388)
T ss_dssp BCSE
T ss_pred EEEE
Confidence 8644
No 77
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=76.44 E-value=8.8 Score=30.35 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCccc
Q 046854 60 NEVNNFIINAVKFIEDLQKPDGSWYG 85 (145)
Q Consensus 60 ~~i~~~i~ka~~~L~~~Q~~dG~w~~ 85 (145)
+.+.+.++++++|+++.+.++|.|+.
T Consensus 250 ~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 250 GKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp HHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 35667899999999999999999975
No 78
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=74.19 E-value=13 Score=31.17 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCccc
Q 046854 61 EVNNFIINAVKFIEDLQKPDGSWYG 85 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~w~~ 85 (145)
.+.+.++=+++||+++|.++|.+..
T Consensus 191 ~lldE~rWg~D~llkm~~~~g~~y~ 215 (586)
T 3h7l_A 191 RLIEEALFGADFLVRMQNEKGFFYM 215 (586)
T ss_dssp HHHHHHHHHHHHHHHTBCTTSCBBC
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEE
Confidence 4556677789999999999998754
No 79
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.56 E-value=4.1 Score=22.05 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
...|..||...+ . +++|++||+++
T Consensus 23 ~~~a~~AL~~~~-n------~e~A~~~L~~h 46 (47)
T 2ekk_A 23 REHAMEALLNTS-T------MEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHHSC-S------HHHHHHHHHTC
T ss_pred HHHHHHHHHHcC-C------HHHHHHHHHcC
Confidence 346677887765 3 88999999875
No 80
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=70.95 E-value=3.6 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLN 124 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~ 124 (145)
..++.||.+.+-+ +++|++||++
T Consensus 23 ~~~~~AL~~~~gn------v~~Ave~L~~ 45 (46)
T 2bwb_A 23 DRNVAALRRSGGS------VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHc
Confidence 3567888877765 7899999975
No 81
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.59 E-value=4.2 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.003 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
...|+.||...+-. +++|++||++++.
T Consensus 43 ~~~A~~AL~~t~gd------ve~A~e~L~sh~~ 69 (83)
T 1veg_A 43 TVVAEAALRVFGGN------VQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHTTTC------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCC
Confidence 45778888877744 8999999999875
No 82
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=69.84 E-value=4.6 Score=23.19 Aligned_cols=24 Identities=25% Similarity=0.190 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
..++.||.+.+-+ +++|++||++.
T Consensus 33 ~~~~~AL~~~~gn------ve~Ave~L~~~ 56 (58)
T 1wr1_B 33 DRNVAALRRSGGS------VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 3567888877765 78999999874
No 83
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=69.58 E-value=8 Score=30.32 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHH-HhCCCCCCccccC---Cc------chhhHHHHHHHHHHHcCC---CCCCcHHHHHHHHHHHhc-ccC
Q 046854 63 NNFIINAVKFIE-DLQKPDGSWYGRW---GV------CFIYSTWWAISGLVAAEK---TYSNCLPIRKATDFLLNI-QCG 128 (145)
Q Consensus 63 ~~~i~ka~~~L~-~~Q~~dG~w~~~~---g~------~~~~~T~~al~aL~~~g~---~~~~~~~v~~a~~~L~~~-Q~~ 128 (145)
...+++++.|-+ ..+.++|||.... |. -.++..+..|.+++.+.. .+.....++++++||++. ..+
T Consensus 12 ~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~ 91 (402)
T 3gt5_A 12 RTHISDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNP 91 (402)
T ss_dssp HHHHHHHHHHHTTTTBCTTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHhcCCCCCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccC
Confidence 445688888754 5667889997522 11 124556777777765532 113456788999999885 445
Q ss_pred C-CCcCCCC
Q 046854 129 D-GGWGESY 136 (145)
Q Consensus 129 d-Ggwg~~~ 136 (145)
+ |||....
T Consensus 92 ~~Gg~~~~~ 100 (402)
T 3gt5_A 92 ATGGYAWTL 100 (402)
T ss_dssp TTSCBCSEE
T ss_pred CCCcEEEEe
Confidence 6 8887543
No 84
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=68.96 E-value=13 Score=28.87 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHH-HhCCC-CCCccccCC--------cchhhHHHHHHHHHHHcCC------CCCCcHHHHHHHHHHHhc
Q 046854 62 VNNFIINAVKFIE-DLQKP-DGSWYGRWG--------VCFIYSTWWAISGLVAAEK------TYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 62 i~~~i~ka~~~L~-~~Q~~-dG~w~~~~g--------~~~~~~T~~al~aL~~~g~------~~~~~~~v~~a~~~L~~~ 125 (145)
+...+++++.|.. ....+ .|||..... ....+..+..|.+++.+.. .+.....++++++||++.
T Consensus 15 l~~~~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~~~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~ 94 (402)
T 1fp3_A 15 VGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRH 94 (402)
T ss_dssp HHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCCCCCEeeEECCCCCCCCCccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 3445688999988 45554 588854211 1234556666666654321 223456789999999998
Q ss_pred -ccCCC--CcCCC
Q 046854 126 -QCGDG--GWGES 135 (145)
Q Consensus 126 -Q~~dG--gwg~~ 135 (145)
+.++| ||-..
T Consensus 95 ~~d~~gg~g~~~s 107 (402)
T 1fp3_A 95 ARVAPPEKKCAFV 107 (402)
T ss_dssp TBSSTTSCCBCSE
T ss_pred ccCcCCCCceEEE
Confidence 55565 77644
No 85
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.13 E-value=4.3 Score=23.52 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
...|+.||...+-. +++|++||++++..
T Consensus 23 ~~~a~~AL~~t~~n------ve~A~e~L~~~~~d 50 (63)
T 2dak_A 23 RDQALKALRATNNS------LERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHHTTSC------SHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCC
Confidence 34667788876532 78999999998753
No 86
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=68.09 E-value=30 Score=27.15 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=62.0
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCC-C-CCccccC---C----cchhhHHHHHHHHHHHc
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKP-D-GSWYGRW---G----VCFIYSTWWAISGLVAA 105 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~-d-G~w~~~~---g----~~~~~~T~~al~aL~~~ 105 (145)
-.+-.+++.|.+++.... . + .++..++++++++||++.... + |+|.... | .-..|.-++++.+|+..
T Consensus 48 k~~~~nar~i~~~a~a~~-~-g--~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~ 123 (421)
T 2zbl_A 48 THLWITARMLHVYSVAAS-M-G--RPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASA 123 (421)
T ss_dssp EEHHHHHHHHHHHHHHHH-T-T--CTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH-c-C--ChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHH
Confidence 345577888888877764 2 1 124556889999999987543 3 8886422 1 13456667777777663
Q ss_pred ---CCCCCCcHHHHHHHHHHHhcc-cC-CCCcCCCC
Q 046854 106 ---EKTYSNCLPIRKATDFLLNIQ-CG-DGGWGESY 136 (145)
Q Consensus 106 ---g~~~~~~~~v~~a~~~L~~~Q-~~-dGgwg~~~ 136 (145)
+.. .....+++.+++|.+.- .+ +|||-...
T Consensus 124 ~~tg~~-~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~ 158 (421)
T 2zbl_A 124 VTTGHP-EARKLLDYTIEVIEKYFWSEEEQMCLESW 158 (421)
T ss_dssp HTTTCT-THHHHHHHHHHHHHHHTEETTTTEECCEE
T ss_pred HHhCCc-cHHHHHHHHHHHHHHHhccCCCCCeeeee
Confidence 222 34566778889998764 34 78876543
No 87
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.69 E-value=8.1 Score=23.80 Aligned_cols=28 Identities=14% Similarity=0.155 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
...|..||...+.. +++|++||++++..
T Consensus 43 ~~~a~~AL~~t~~n------ve~A~ewL~~~~~d 70 (83)
T 2dai_A 43 ENRATKALQLNHMS------VPQAMEWLIEHAED 70 (83)
T ss_dssp HHHHHHHHHHTTSC------HHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCC
Confidence 34667888876533 88999999998753
No 88
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=67.04 E-value=6.3 Score=20.78 Aligned_cols=24 Identities=29% Similarity=0.251 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
..|+.||...+.. +++|++||++.
T Consensus 19 ~~a~~AL~~~~~n------~e~A~~~L~~~ 42 (43)
T 2g3q_A 19 EEAHNALEKCNWD------LEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHTC
T ss_pred HHHHHHHHHhCcC------HHHHHHHHHcC
Confidence 4567788776544 78999999763
No 89
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=66.62 E-value=6.7 Score=22.91 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
...|..||...+-. .++.|++||++++.
T Consensus 23 ~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 23 VHTALKALAATGRK-----TAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCC
Confidence 45667888777532 37899999999985
No 90
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=65.83 E-value=4.4 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
...++.||...+-. +++|++||++.
T Consensus 27 ~~~~~~AL~~t~gn------~e~A~e~L~~~ 51 (52)
T 2jy5_A 27 REANLQALIATGGD------INAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 34567788877644 78999999764
No 91
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.54 E-value=7.6 Score=22.59 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
...|..||...+-. .+++|++||++++.
T Consensus 23 ~~~a~~AL~~t~~~-----nve~A~ewLl~~~~ 50 (64)
T 1whc_A 23 RGRAEKALALTGNQ-----GIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHhCCC
Confidence 45677888877422 28899999999874
No 92
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.44 E-value=5.4 Score=21.90 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
...|+.||...+-. +++|++||++.
T Consensus 22 ~~~a~~AL~~~~~n------~e~A~e~L~~g 46 (49)
T 1ify_A 22 RERVVAALRASYNN------PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHTTTSC------SHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 44677888876644 68999999873
No 93
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.44 E-value=10 Score=22.75 Aligned_cols=29 Identities=3% Similarity=-0.063 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
...|..||...+-. .+++|++||++++..
T Consensus 23 ~~~a~~AL~~t~n~-----~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 23 MDACRKAVYYTGNS-----GAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHHTSC-----CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 34667888877631 278999999998753
No 94
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=57.46 E-value=22 Score=31.34 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCCc-----chhhHHHHHHHHHHHc----CCC---CCCcHHHHHHHHHHHhcccCCCC
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWGV-----CFIYSTWWAISGLVAA----EKT---YSNCLPIRKATDFLLNIQCGDGG 131 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g~-----~~~~~T~~al~aL~~~----g~~---~~~~~~v~~a~~~L~~~Q~~dGg 131 (145)
+.+++.+++|.+.|.+||.++..... ...+...+ +.++... |-. .+..+.++++++|+++...++|-
T Consensus 595 ~lar~~L~~l~~~Q~~dG~ip~~~p~~~~~~~~~~~~~~-i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d~~GL 673 (956)
T 2okx_A 595 EIVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFW-ILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHIDDSGL 673 (956)
T ss_dssp HHHHHHHHHGGGGTTTCTTCCSBSSCSSCCCCHHHHHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBCTTSS
T ss_pred HHHHHHHHHHHhhcccCCCcCccccccccCCCcChHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35688999999999999998653221 12222222 2222221 211 12357899999999988767764
Q ss_pred c
Q 046854 132 W 132 (145)
Q Consensus 132 w 132 (145)
|
T Consensus 674 l 674 (956)
T 2okx_A 674 L 674 (956)
T ss_dssp B
T ss_pred E
Confidence 3
No 95
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=56.36 E-value=37 Score=21.86 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCC
Q 046854 61 EVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
-+.+.+.+++.-+...|+.- +...+.++.-+..++.+... ...+.-++++.=|...-..+||||+
T Consensus 35 yvleiLe~ai~k~k~n~Qt~--------~~EAR~vYqni~t~clvekl-hl~~eE~~~L~~I~~ia~S~~~WGg 99 (112)
T 2ip6_A 35 YVLDILETGISKTKHNQQTP--------ERQARVVYNKIASQALVDKL-HFTAEENKVLAAINELAHSQKGWGE 99 (112)
T ss_dssp HHHHHHHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHccccCH--------HHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccccccc
Confidence 35567888888888776421 12355677777777766655 3456677788888888889999985
No 96
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=55.66 E-value=16 Score=22.50 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
...|..||...+-. .+++|++||++++.
T Consensus 43 ~~~a~~AL~~t~n~-----n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 43 QLHCQKAAINTSNA-----GVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTTTC-----CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHhCCC
Confidence 34667888776521 38899999999874
No 97
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=54.97 E-value=45 Score=27.84 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCcc---------cc-----C--CcchhhHHHHHHHHHH----HcCCCCCCcHHHHHHHHHHHh--
Q 046854 67 INAVKFIEDLQKPDGSWY---------GR-----W--GVCFIYSTWWAISGLV----AAEKTYSNCLPIRKATDFLLN-- 124 (145)
Q Consensus 67 ~ka~~~L~~~Q~~dG~w~---------~~-----~--g~~~~~~T~~al~aL~----~~g~~~~~~~~v~~a~~~L~~-- 124 (145)
.-+++.|+..-.++|... +. + .-+-++..++++.+|. .+|.. ...++..+||.+
T Consensus 11 ~~~~~~~l~ni~~~g~~~~~~~tGaiIAsptts~pDYrY~W~RDaa~t~~aL~~~~~~~G~~----~~a~~~~~~l~~~~ 86 (599)
T 2vn4_A 11 PIALNNLLCNVGPDGCRAFGTSAGAVIASPSTIDPDYYYMWTRDSALVFKNLIDRFTETYDA----GLQRRIEQYITAQV 86 (599)
T ss_dssp HHHHHHHHTTBTTTCTTSTTSCTTCBCSCSCCSSSCCCSEEHHHHHHHHHHHHHHHHHSBCH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCceEEEECCCCCCCCeEEchhhHHHHHHHHHHHHHhCCCH----HHHHHHHHHHhccc
Confidence 347777888877776541 11 1 1134667888888888 77754 667789999974
Q ss_pred -cc---cCCCCcC
Q 046854 125 -IQ---CGDGGWG 133 (145)
Q Consensus 125 -~Q---~~dGgwg 133 (145)
.| ++||+|.
T Consensus 87 ~lQ~~y~~~G~~~ 99 (599)
T 2vn4_A 87 TLQGLSNPSGSLA 99 (599)
T ss_dssp HHHHCCBTTBCST
T ss_pred ceeeeeCCCCCcc
Confidence 67 8999984
No 98
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.23 E-value=15 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccC
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNIQCG 128 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~ 128 (145)
..|..||...+.. +++|++||+++...
T Consensus 36 ~~a~~AL~~~n~n------~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 36 EPAEEALKSNNMN------LDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHTTSC------HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCC------HHHHHHHHHHCcCC
Confidence 4566777544433 88999999998754
No 99
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=52.25 E-value=14 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~ 125 (145)
..++.||.+.+.+ +++|++||++.
T Consensus 82 ~~ni~AL~~t~Gd------ve~AVe~L~~~ 105 (108)
T 2cwb_A 82 ELSLRALQATGGD------IQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHhc
Confidence 4566777766654 88999999875
No 100
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=51.01 E-value=46 Score=28.28 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHh---C-CCCCCccccCCcch-hhHHH---HHHHHHH-HcCCCCCCcHHHHHHHHHHHhcccCCCCc
Q 046854 63 NNFIINAVKFIEDL---Q-KPDGSWYGRWGVCF-IYSTW---WAISGLV-AAEKTYSNCLPIRKATDFLLNIQCGDGGW 132 (145)
Q Consensus 63 ~~~i~ka~~~L~~~---Q-~~dG~w~~~~g~~~-~~~T~---~al~aL~-~~g~~~~~~~~v~~a~~~L~~~Q~~dGgw 132 (145)
++.++++++.|... . .+||+|.. |..+ .+.+. ..+.+|. ..|.+.-..+.+++...|++....+||-.
T Consensus 335 ~~wl~~a~~~l~~~l~~~~~~DG~~~E--G~~Y~~~~~~~~~~~~~~l~~~~g~d~~~~p~l~~~~~~~~~~~~p~g~~ 411 (776)
T 3a0o_A 335 GEWLDYTVEFLATLYSPWAGTDGGWAE--GPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGTRR 411 (776)
T ss_dssp HHHHHHHHHHHHHTCCTTBCTTSCBTT--CHHHHHHHHHHHHHHHHHHHHHHCCCGGGSHHHHHTTHHHHHHSCTTCSS
T ss_pred HHHHHHHHHHHHHhcccccCCCCCCcc--chhHHHHHHHHHHHHHHHHHHhhCcchhhCHhHHHHHHHHHHeeCCCCcE
Confidence 45667776665443 2 58888753 2221 22222 2223332 23543224688999999999999999854
No 101
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=49.94 E-value=87 Score=25.18 Aligned_cols=90 Identities=14% Similarity=0.056 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHHhhhhCCccc-hhhhHHHHHHHHHHHHHhCCCCCCccc----cCCc----------chhhHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHR-KNEVNNFIINAVKFIEDLQKPDGSWYG----RWGV----------CFIYSTWWAI 99 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~-~~~i~~~i~ka~~~L~~~Q~~dG~w~~----~~g~----------~~~~~T~~al 99 (145)
-++..++++|.++....+. ++- ..+.-+.+++.+++|.+..+-.|.|.. .-|. .++-.|+..+
T Consensus 62 tS~tniGfgL~A~~vA~e~--G~I~r~ea~~R~~~tL~~l~~~~r~~G~fyhwyD~~Tg~~lpf~~~d~~~StVDTa~L~ 139 (430)
T 3eu8_A 62 VTSGGSGFGIMAILAGIDR--GYVSREEGLRRMEKIVGFLEKADRFKGAYPHWWNGETGHVQPFGQKDNGGDLVETAFLM 139 (430)
T ss_dssp EEHHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHSCCBTTBCCSEEETTTCCBCCBTTTBCSEEHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhchhcCCcCccccCCCCCCcCCCCcccCcccHHHHHHHH
Confidence 4566777877777665543 221 123344688999999998888898853 1111 2455688888
Q ss_pred HHHHHcCC--C--CCCcHHHHHHHHHHHhcc
Q 046854 100 SGLVAAEK--T--YSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 100 ~aL~~~g~--~--~~~~~~v~~a~~~L~~~Q 126 (145)
++|..+.. + ......+++-++-|.+..
T Consensus 140 ~GlL~ar~YF~~~~~~E~~i~~~~~~L~~~v 170 (430)
T 3eu8_A 140 QGLLAVHQYYAEGSAEEKKLAGRIDKLWREV 170 (430)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHhC
Confidence 88876643 1 012345666666666553
No 102
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=49.81 E-value=18 Score=20.34 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=10.8
Q ss_pred CcHHHHHHHHHHHhc-ccCCCCc
Q 046854 111 NCLPIRKATDFLLNI-QCGDGGW 132 (145)
Q Consensus 111 ~~~~v~~a~~~L~~~-Q~~dGgw 132 (145)
.++.+..++.-+++. -+.+|||
T Consensus 6 ~D~rl~~al~qMl~MGF~negGW 28 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDEGGW 28 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCTTSH
T ss_pred cChHHHHHHHHHHHcCCCccccH
Confidence 344555555555554 2345555
No 103
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=49.18 E-value=1.1e+02 Score=25.13 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHHhhhhCC--ccchhhhHHHHHHHHHHHHHhCCCCC
Q 046854 36 YVECTASALKAMTLFQKLHP--KHRKNEVNNFIINAVKFIEDLQKPDG 81 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~--~~~~~~i~~~i~ka~~~L~~~Q~~dG 81 (145)
-+|.++..|.++..+-+... ....+...++|+++++++...|..+|
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~ 225 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDD 225 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccC
Confidence 68899999998876654321 12234566789999999999888775
No 104
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.22 E-value=34 Score=22.01 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCCcCCCC
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGGWGESY 136 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~ 136 (145)
-..|+.||...+.+ +.+|+.+|++-...-|.|....
T Consensus 54 eeeAr~AL~~~ngD------l~~AI~~Lleg~~~~~~W~~~~ 89 (104)
T 1wj7_A 54 QDECVIALHDCNGD------VNRAINVLLEGNPDTHSWEMVG 89 (104)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHTCSSSCSSCSSCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCCCcCCceeeec
Confidence 34678899888766 8899999998876568897554
No 105
>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinus} PDB: 3e80_A* 2fut_A* 2fuq_A*
Probab=44.60 E-value=30 Score=29.80 Aligned_cols=61 Identities=10% Similarity=-0.200 Sum_probs=34.7
Q ss_pred CCCCCccccCCcc-hhhHHHH---HHHHHHHc-CCCCCCcHHHHHHHHHHHhcccCCCCcCCCCCCCCC
Q 046854 78 KPDGSWYGRWGVC-FIYSTWW---AISGLVAA-EKTYSNCLPIRKATDFLLNIQCGDGGWGESYLSCPN 141 (145)
Q Consensus 78 ~~dG~w~~~~g~~-~~~~T~~---al~aL~~~-g~~~~~~~~v~~a~~~L~~~Q~~dGgwg~~~~s~~~ 141 (145)
.+||+|.- |.. ..|++.. ++.+|... |.+. ..+.+++..+|++..+.++|-+-...++.++
T Consensus 223 ~~DG~~~E--G~~Yw~yg~~~l~~~~~aL~~~tg~d~-~~p~l~k~a~y~l~~~~p~g~~~nfgDs~~~ 288 (749)
T 3e7j_A 223 YPSHNYHQ--GMSALNVRFTNDLFALWILDRMGAGNV-FNPGQQFILYDAIYKRRPDGQILAGGDVDYS 288 (749)
T ss_dssp GGGCCCSS--HHHHHHHHHHHHHHHHHHHHHHTTCCC-SCGGGGGTTHHHHHTBCTTSCBCCCSSCCCC
T ss_pred CCCCCccc--cHHHHHHHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHHHHeeCCCCceeecCCCCcc
Confidence 58999853 211 1223333 33344333 4442 3367999999999999888854334444433
No 106
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=40.05 E-value=87 Score=24.48 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhC-CCCCCcccc-------------C---Cc----chhhHH
Q 046854 37 VECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQ-KPDGSWYGR-------------W---GV----CFIYST 95 (145)
Q Consensus 37 ~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q-~~dG~w~~~-------------~---g~----~~~~~T 95 (145)
+..|-+.|.+|+..++... .+++.++..+.++++++.. ++||+.... + |- .-.++.
T Consensus 147 iID~mmni~~L~~A~~~~g---d~~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGq 223 (377)
T 2ahf_A 147 IIDCLLNLPLLLWAGEQTG---DPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQ 223 (377)
T ss_dssp EGGGGGGHHHHHHHHHHHC---CTHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHH
T ss_pred EechHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHH
Confidence 3345555778876665421 1245567788888888876 455654210 0 11 234567
Q ss_pred HHHHHHHHHcCCC---CCCcHHHHHHHHHHHhcccCCCC
Q 046854 96 WWAISGLVAAEKT---YSNCLPIRKATDFLLNIQCGDGG 131 (145)
Q Consensus 96 ~~al~aL~~~g~~---~~~~~~v~~a~~~L~~~Q~~dGg 131 (145)
++++.+|..+-.. ++.-...++..++++++..+||+
T Consensus 224 Aw~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 224 AWGIYGFALNSRYLGNADLLETAKRMARHFLARVPEDGV 262 (377)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhHHhCC
Confidence 8888888776321 11233566778999999877887
No 107
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=40.04 E-value=1.2e+02 Score=25.44 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhhCCcc-chhhhHHHHHHHHHHHHHh--------------------CCCCCCcc-------ccC-Cc
Q 046854 39 CTASALKAMTLFQKLHPKH-RKNEVNNFIINAVKFIEDL--------------------QKPDGSWY-------GRW-GV 89 (145)
Q Consensus 39 ~T~~al~aL~~~~~~~~~~-~~~~i~~~i~ka~~~L~~~--------------------Q~~dG~w~-------~~~-g~ 89 (145)
....++.+|+.+....++. ..+.+...|+++++|.++. +..+|-+- --| |.
T Consensus 364 ~~gl~~iaLl~l~~~~~d~~~~~~a~~~i~~~~d~~l~~~~~~~npfg~~~~~~~~~~~~~~~~y~~p~~~~~~y~WqGs 443 (586)
T 3h7l_A 364 EAGLPTIALCEYLAIEDDSVQTESVKCIVNRACEFEIKISNKVTNPFGYPRQYVKGVNESKRDAFFVAHNNESGYWWQGE 443 (586)
T ss_dssp TTTHHHHHHHHHHHHCCSTTTTHHHHHHHHHHHHHHHHHHHSSCCSSCCCCEEECCTTSCCEEESSCCSSSTTSSCCCCC
T ss_pred ccHHHHHHHHHhhhhcCChHHHHHHHHHHHHHhhhhhhhcccccCccccHHHHhhhhccccccccccccCCCCCCeeeCh
Confidence 3456666666665554432 2345666788888863331 11112110 136 54
Q ss_pred chhhHHHHHHHHHHHcCCCC------CCcHHHHHHHHHHHhcc
Q 046854 90 CFIYSTWWAISGLVAAEKTY------SNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 90 ~~~~~T~~al~aL~~~g~~~------~~~~~v~~a~~~L~~~Q 126 (145)
..+....|+.++.+..... +......+.++||+..-
T Consensus 444 -N~~~an~a~~~~~a~~~~~~~~~~~~y~~~a~~qldyiLG~N 485 (586)
T 3h7l_A 444 -NARLGSLATMAYLAQPHIASQEIQQQLSVFAQDALNWIVGLN 485 (586)
T ss_dssp -HHHHHHHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHBTCS
T ss_pred -HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhhhhhccCC
Confidence 3444445555555543331 13556778999998863
No 108
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=39.88 E-value=87 Score=25.42 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=43.0
Q ss_pred ccCCChhHHHHHHHHHHHhhhhC--Cccc--------------hhhh-HHHHHHHHHHHHHhCC-CC-CCccccCCcchh
Q 046854 32 IEHDYVECTASALKAMTLFQKLH--PKHR--------------KNEV-NNFIINAVKFIEDLQK-PD-GSWYGRWGVCFI 92 (145)
Q Consensus 32 ~d~~~~~~T~~al~aL~~~~~~~--~~~~--------------~~~i-~~~i~ka~~~L~~~Q~-~d-G~w~~~~g~~~~ 92 (145)
+..+-.|.++..+.+|..+.+.. .+.. ...+ .+.|++.++||.+.=+ || |-|--+.+ .++
T Consensus 139 w~~~Q~D~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~dlWEer~g-~~~ 217 (492)
T 2fba_A 139 WGRPQNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDLWEENQG-RHF 217 (492)
T ss_dssp CSCCBTTHHHHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECTTSCCEE-CCH
T ss_pred cCCccccchhHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCCCCcCccCC-CCh
Confidence 45577788998887776543210 0000 0223 3689999999988754 44 66644333 356
Q ss_pred hHHHHHHHHHHH
Q 046854 93 YSTWWAISGLVA 104 (145)
Q Consensus 93 ~~T~~al~aL~~ 104 (145)
+..+++..||..
T Consensus 218 ~T~~~~~~AL~~ 229 (492)
T 2fba_A 218 FTSLVQQKALAY 229 (492)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666643
No 109
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=39.58 E-value=17 Score=19.68 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcc
Q 046854 95 TWWAISGLVAAEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 95 T~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
...|+.||.+++.+ ++.|.+||.++-
T Consensus 18 ~~~a~~Al~a~~~n------~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 18 ESLVIQAYFACEKN------ENLAANFLLSQN 43 (47)
T ss_dssp HHHHHHHHTTTTSC------HHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCC------HHHHHHHHHhCc
Confidence 45778888888755 788999998753
No 110
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=39.37 E-value=79 Score=24.26 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhC-CCCCCcccc----C-C-----cchhhHHHHHHHHHH
Q 046854 35 DYVECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQ-KPDGSWYGR----W-G-----VCFIYSTWWAISGLV 103 (145)
Q Consensus 35 ~~~~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q-~~dG~w~~~----~-g-----~~~~~~T~~al~aL~ 103 (145)
..+...+.++.+|+.+.+...+ +.+.+..+++.+|+.+.- +++|.+... . + ...+|+.+..|.++.
T Consensus 147 knaisN~~~~~~la~l~~~tgd---~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~ 223 (349)
T 3k7x_A 147 KNTPVNAPFIILSCWLYNELNE---TKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANL 223 (349)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHH
Confidence 3344677777777777654321 345667899999998753 556655321 1 1 135778888999988
Q ss_pred HcCC-C--CCCcHHHHHHHHHHHhcccCCCCc
Q 046854 104 AAEK-T--YSNCLPIRKATDFLLNIQCGDGGW 132 (145)
Q Consensus 104 ~~g~-~--~~~~~~v~~a~~~L~~~Q~~dGgw 132 (145)
.+-. . +.....+++.++++++.-.++|=.
T Consensus 224 ~LY~~T~d~~yl~~a~~l~~~~~~~f~~~gi~ 255 (349)
T 3k7x_A 224 ELYRITKEAIYLDTANKTAAISLKELTEDGIF 255 (349)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHEETTEE
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHHHhccCCcc
Confidence 7622 1 112344555556665554455533
No 111
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=38.69 E-value=1.2e+02 Score=24.54 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCCCcc---------cc-----CC--cchhhHHHHHHHHHH---HcCCCCCCcHHHHHHHHHHHh---
Q 046854 67 INAVKFIEDLQKPDGSWY---------GR-----WG--VCFIYSTWWAISGLV---AAEKTYSNCLPIRKATDFLLN--- 124 (145)
Q Consensus 67 ~ka~~~L~~~Q~~dG~w~---------~~-----~g--~~~~~~T~~al~aL~---~~g~~~~~~~~v~~a~~~L~~--- 124 (145)
.-++..|+..-.++|... +. |+ -+-++..++++.+|. .+|.. ...++..+||..
T Consensus 12 ~~~~~~~l~ni~~~G~~~~~~~tGaiIASpttsnpDYrY~W~RDaa~t~~aL~~~~~~G~~----~~a~~~~~~l~~~~~ 87 (472)
T 1gai_A 12 TVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDT----DLLSTIEHYISSQAI 87 (472)
T ss_dssp HHHHHHHHHTBTTTCTTCTTCCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCCCceEEeeCCCCCCCCeEEchhhHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHH
Confidence 447778888888777541 11 11 134667889999998 77764 345667777776
Q ss_pred cc---cCCCCcC
Q 046854 125 IQ---CGDGGWG 133 (145)
Q Consensus 125 ~Q---~~dGgwg 133 (145)
.| +++|.|-
T Consensus 88 lQ~~~~~~G~l~ 99 (472)
T 1gai_A 88 IQGVSNPSGDLS 99 (472)
T ss_dssp HHHCCBTTBCTT
T ss_pred hhcccCCCCccc
Confidence 34 6788775
No 112
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=38.39 E-value=38 Score=16.95 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHH
Q 046854 97 WAISGLVAAEKTYSNCLPIRKATDFL 122 (145)
Q Consensus 97 ~al~aL~~~g~~~~~~~~v~~a~~~L 122 (145)
.|..||...+.+ +++|++||
T Consensus 20 ~a~~AL~~~~~n------~e~A~~~L 39 (40)
T 1z96_A 20 EAAQALDAANGD------LDVAASFL 39 (40)
T ss_dssp HHHHHHHHTTTC------HHHHHHHH
T ss_pred HHHHHHHHcCCC------HHHHHHHH
Confidence 456666665433 67788776
No 113
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=37.37 E-value=1.5e+02 Score=23.66 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=39.5
Q ss_pred ChhHHHHHHHHHHHhhhhCCcc-chhhhHHHHHHHHHHHH--HhCCCCCCccc----cCCc----------chhhHHHHH
Q 046854 36 YVECTASALKAMTLFQKLHPKH-RKNEVNNFIINAVKFIE--DLQKPDGSWYG----RWGV----------CFIYSTWWA 98 (145)
Q Consensus 36 ~~~~T~~al~aL~~~~~~~~~~-~~~~i~~~i~ka~~~L~--~~Q~~dG~w~~----~~g~----------~~~~~T~~a 98 (145)
++..+++.|.++....+. ++ ...+..+.+++.+++|. +.+.-.|.|+. +-+. ..+..|+.-
T Consensus 53 S~tniGf~L~a~~va~e~--G~I~~~e~~~R~~~tL~~l~~~~~~r~~G~fyhwyd~~Tg~~l~~~~~d~~vStVDtg~L 130 (424)
T 4gl3_A 53 TIGGSGFGVMAIIVGIER--GFVTREQGAERMLKIVRFLSDKNTDSYHGMWAHWMNGKTGKTIPFSRKDDGADIVESAFM 130 (424)
T ss_dssp EHHHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHCTTSCCBTTBCCSEEETTTCCEECSBTTBCSEEHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHhhccccccCCccccceeCCCCCCCCCcCCCCcccHHHHHHH
Confidence 566677777776665442 22 12233445788899884 55566788853 1011 234567777
Q ss_pred HHHHHHc
Q 046854 99 ISGLVAA 105 (145)
Q Consensus 99 l~aL~~~ 105 (145)
+.+|..+
T Consensus 131 ~~gLl~~ 137 (424)
T 4gl3_A 131 FEGLLAA 137 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777655
No 114
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=36.68 E-value=1.1e+02 Score=23.89 Aligned_cols=23 Identities=9% Similarity=0.332 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHhcccCCCCcCC
Q 046854 112 CLPIRKATDFLLNIQCGDGGWGE 134 (145)
Q Consensus 112 ~~~v~~a~~~L~~~Q~~dGgwg~ 134 (145)
.+.++++++|+++.+.++|.|..
T Consensus 253 ~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 253 HSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp HHTHHHHHHHHHHTCCTTSCCCS
T ss_pred HHHHHHHHHHHHHhhccCCCCCC
Confidence 45789999999999998988864
No 115
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.06 E-value=62 Score=18.21 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCC
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGD 129 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~d 129 (145)
..|..||...|-. -++.|++||.+.--++
T Consensus 24 erae~Alk~Tg~~-----Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 24 EMAGRALKQTGSR-----SIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhCcc-----cHHHHHHHHHHhcCCC
Confidence 3566677766654 2788999998875444
No 116
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=31.79 E-value=1.7e+02 Score=22.36 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHhCC--CCCC-ccc
Q 046854 61 EVNNFIINAVKFIEDLQK--PDGS-WYG 85 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~--~dG~-w~~ 85 (145)
...++++++++|+++.+. ++|. |+.
T Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 227 ASLSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 456789999999977655 5677 643
No 117
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=31.49 E-value=1.6e+02 Score=23.86 Aligned_cols=44 Identities=5% Similarity=0.008 Sum_probs=28.4
Q ss_pred chhhHHHHHHHHHHHcCCCCCC----cHHHHHHHHH---HHhcccCCCCcC
Q 046854 90 CFIYSTWWAISGLVAAEKTYSN----CLPIRKATDF---LLNIQCGDGGWG 133 (145)
Q Consensus 90 ~~~~~T~~al~aL~~~g~~~~~----~~~v~~a~~~---L~~~Q~~dGgwg 133 (145)
+-++..++++.+|..+|..... ...+++-++| |.+..+++|.|-
T Consensus 66 ~W~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~ 116 (492)
T 2fba_A 66 QWTRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFD 116 (492)
T ss_dssp EEHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTT
T ss_pred EccchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcC
Confidence 4467788999999888863111 3445566665 444447888875
No 118
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=30.00 E-value=77 Score=27.50 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCC------c-----chhhHHHHHHHHHHHc----CC---CCC-------------Cc
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWG------V-----CFIYSTWWAISGLVAA----EK---TYS-------------NC 112 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g------~-----~~~~~T~~al~aL~~~----g~---~~~-------------~~ 112 (145)
+.+++.+..+.+.|.+||.+...|. . .....+.+.+.++... |- ..+ .-
T Consensus 382 e~ar~~il~~~~~Q~~dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~ 461 (822)
T 3rrs_A 382 ERARERIIDIASTQFADGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILDEPVPFDNEPGSEVPLF 461 (822)
T ss_dssp HHHHHHHHHHHTTCCTTSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGGSEECSTTCTTCCEEHH
T ss_pred HHHHHHHHHHHHhhcccCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHHhhhhhhccccccccHH
Confidence 3578889999999999999865332 1 1233456666666543 21 100 12
Q ss_pred HHHHHHHHHHHhcccCCC
Q 046854 113 LPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 113 ~~v~~a~~~L~~~Q~~dG 130 (145)
+.++++++|+++...++|
T Consensus 462 eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 462 EHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHHHHHHHSBCTTS
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 478999999998765554
No 119
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.42 E-value=75 Score=17.83 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhcccCCCC
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNIQCGDGG 131 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~~dGg 131 (145)
...+.+|...+. .+++||+.|++....|-|
T Consensus 25 ~~N~~aL~~~~g------nv~~aI~~Ll~~~~~~~~ 54 (54)
T 2cp8_A 25 QLNLRLLKKHNY------NILQVVTELLQLSGPSSG 54 (54)
T ss_dssp HHHHHHHTTTTT------CHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHhccCCCCC
Confidence 344555554443 488999999988766543
No 120
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=29.16 E-value=1.1e+02 Score=20.23 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCcc--ccCCcchhhHHHHHHHHHH-HcCCCCCCcHHHHHHHHHHHhcc
Q 046854 61 EVNNFIINAVKFIEDLQKPDGSWY--GRWGVCFIYSTWWAISGLV-AAEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~~dG~w~--~~~g~~~~~~T~~al~aL~-~~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
.+.+.+.++++||.+.....|..- ..-|. .+.+..++.-|. ..|.. .++|++++++++
T Consensus 68 ~l~~~~~~~~~fI~~~~~~~~~VlVHC~~G~--sRS~~vv~ayLm~~~~~s------~~~A~~~v~~~R 128 (161)
T 3emu_A 68 QLYDSIPNAIKFIIRSIQRKEGVLIISGTGV--NKAPAIVIAFLMYYQRLS------FINAFNKVQGLY 128 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEESSSS--SHHHHHHHHHHHHHTTCC------HHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHhcCCeEEEEcCCCC--cHHHHHHHHHHHHHhCCC------HHHHHHHHHHHC
Confidence 345568889999988655544431 12233 233333333332 34544 678888888875
No 121
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=28.90 E-value=91 Score=20.05 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcc--ccCCcchhhHHHHHHHHHH-HcCCCCCCcHHHHHHHHHHHhcc
Q 046854 63 NNFIINAVKFIEDLQKPDGSWY--GRWGVCFIYSTWWAISGLV-AAEKTYSNCLPIRKATDFLLNIQ 126 (145)
Q Consensus 63 ~~~i~ka~~~L~~~Q~~dG~w~--~~~g~~~~~~T~~al~aL~-~~g~~~~~~~~v~~a~~~L~~~Q 126 (145)
.+.+.++++||.......|..- ..-|.+ +....++.-|. ..|.+ .++|+++|+++.
T Consensus 64 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~s--RS~~~v~ayLm~~~~~~------~~~A~~~v~~~R 122 (144)
T 3s4e_A 64 LSYFPECFEFIEEAKRKDGVVLVHSNAGVS--RAAAIVIGFLMNSEQTS------FTSAFSLVKNAR 122 (144)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEECSSSSS--HHHHHHHHHHHHHHCCC------HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCc--hHHHHHHHHHHHHcCCC------HHHHHHHHHHHC
Confidence 3457888889887765555432 122332 33333333332 34554 678999998875
No 122
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=27.71 E-value=2e+02 Score=24.32 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhc---c-cCCCCcCCC
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNI---Q-CGDGGWGES 135 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~---Q-~~dGgwg~~ 135 (145)
++.+.+|...+..+.....++++++.|... . .+||+|-+.
T Consensus 319 ~l~~aalal~~e~~~a~~wl~~a~~~l~~~l~~~~~~DG~~~EG 362 (776)
T 3a0o_A 319 VLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAEG 362 (776)
T ss_dssp THHHHHHHHTTSCHHHHHHHHHHHHHHHHTCCTTBCTTSCBTTC
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcccccCCCCCCccc
Confidence 444455554443322344677777765443 2 589998775
No 123
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=27.41 E-value=75 Score=26.52 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred CCccccCCc-chhhHHHHHHHHHHHc--------------------------CCCCCCcHHHHHHHHHHHhcccCCC---
Q 046854 81 GSWYGRWGV-CFIYSTWWAISGLVAA--------------------------EKTYSNCLPIRKATDFLLNIQCGDG--- 130 (145)
Q Consensus 81 G~w~~~~g~-~~~~~T~~al~aL~~~--------------------------g~~~~~~~~v~~a~~~L~~~Q~~dG--- 130 (145)
|||...-.. -++..++.++..|... +..+.....++=+++||+++|.++|
T Consensus 172 GGwyDAGD~~K~~~p~a~t~~~ll~~ye~~~~~~~~~~~~~~~~~~~iPes~n~~~d~ldeikwg~D~llk~q~~~g~~~ 251 (609)
T 1ut9_A 172 GGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNNGYPDILDEARWEIEFFKKMQVTEKEDP 251 (609)
T ss_dssp CSBCCSSSSCEEHHHHHHHHHHHHHHHHHHHHTTCTTSGGGSTTSSSSTTTTSSSCHHHHHHHHHHHHHHHHBCCTTTCG
T ss_pred CCeeeCCCCCeecCchHHHHHHHHHHHHHhhhccccchhhhccccccCccccCcHHHHHHHHHHHHHHHHHhccCCCCcc
Q ss_pred -------------CcC---CCCCCCCCCccC
Q 046854 131 -------------GWG---ESYLSCPNKVKL 145 (145)
Q Consensus 131 -------------gwg---~~~~s~~~~~~~ 145 (145)
.|. ..+.-...++|+
T Consensus 252 ~~~g~v~~~~~D~~w~g~~~~Pe~~~~~R~~ 282 (609)
T 1ut9_A 252 SIAGMVHHKIHDFRWTALGMLPHEDPQPRYL 282 (609)
T ss_dssp GGTTCEECEEEESSCCCSSCCGGGCCSBEEE
T ss_pred eEEEEecCCCCCcccCCCCCChhhCCCceee
No 124
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=27.17 E-value=68 Score=20.78 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=16.7
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhccc
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLLNIQC 127 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~~~Q~ 127 (145)
..|..||...+- .+++|++||++...
T Consensus 93 ~~a~~AL~~~~~------~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 93 NQAIQALRATNN------NLERALDWIFSHPE 118 (126)
T ss_dssp HHHHHHHHHHTS------CHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHhCCC
Confidence 344445544432 37899999998764
No 125
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=26.74 E-value=1.4e+02 Score=23.07 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCCCcccc--CCcchhhHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHh-cccCCCCcC
Q 046854 66 IINAVKFIEDLQKPDGSWYGR--WGVCFIYSTWWAISGLVAAEKTYSNCLPIRKATDFLLN-IQCGDGGWG 133 (145)
Q Consensus 66 i~ka~~~L~~~Q~~dG~w~~~--~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~a~~~L~~-~Q~~dGgwg 133 (145)
.++++.-|..+-......+++ +-......+++.+.+|...+. ....+.+.-+.. .|.++|-.-
T Consensus 5 ~~~a~~~l~~n~~~~~~vP~~~~f~~~~~wDs~~~~~gl~~~~~-----~~a~~~l~~~~~~~q~~~G~ip 70 (420)
T 2z07_A 5 RTKAVEVLQRNSRGAFTVPAHGLYPYQWLWDSAFIALGWTQVDW-----ERAWQELLCLFDYGQGPDGMLP 70 (420)
T ss_dssp HHHHHHHHHHHBCSSCBCSSTTCCSCEEHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHHCCTTCCCC
T ss_pred HHHHHHHHHHcCCCCCcCCCCCCCCCccHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHhhCCCcc
Confidence 467777777773322222221 223455677777777765432 233444444455 899998765
No 126
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=24.44 E-value=34 Score=27.34 Aligned_cols=52 Identities=15% Similarity=0.355 Sum_probs=0.0
Q ss_pred CCccc-----cCCcchhhHHHHHHHHHHHc-------CCCCCCcHHHHHHHHHHHhcccCCCCc
Q 046854 81 GSWYG-----RWGVCFIYSTWWAISGLVAA-------EKTYSNCLPIRKATDFLLNIQCGDGGW 132 (145)
Q Consensus 81 G~w~~-----~~g~~~~~~T~~al~aL~~~-------g~~~~~~~~v~~a~~~L~~~Q~~dGgw 132 (145)
|||.. +++.+-.+.+.+.+.++... +..+.....++=+++||+++|.++|.+
T Consensus 50 GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~~~~~d~ldeikwg~D~llk~~~~~g~~ 113 (433)
T 1ks8_A 50 GGYFDAGDFVKFGFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEF 113 (433)
T ss_dssp CSBCCSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHCCBTTBE
T ss_pred CceeECCCCCeeccchHHHHHHHHHHHHHhHHhhhcCCchHHHHHHHHHHHHHHHHhccCCCcE
No 127
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=24.00 E-value=1.5e+02 Score=23.86 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHhCCC-C-CCccccCCcchhhHHHHHHHHHHH
Q 046854 62 VNNFIINAVKFIEDLQKP-D-GSWYGRWGVCFIYSTWWAISGLVA 104 (145)
Q Consensus 62 i~~~i~ka~~~L~~~Q~~-d-G~w~~~~g~~~~~~T~~al~aL~~ 104 (145)
+-+.|++.++||.+.=++ | |-|--+.+ .+++..+++..||..
T Consensus 154 ~w~~i~~~l~~v~~~w~~pd~dlWEer~g-~~~~T~~~~~~AL~~ 197 (472)
T 1gai_A 154 VWPLVRNDLSYVAQYWNQTGYDLWEEVNG-SSFFTIAVQHRALVE 197 (472)
T ss_dssp HHHHHHHHHHHHHHHTTSCEECTTSCCEE-EEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccCC-CCHHHHHHHHHHHHH
Confidence 446799999999887553 3 66644333 356666666666653
No 128
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=23.10 E-value=2.5e+02 Score=21.35 Aligned_cols=89 Identities=10% Similarity=-0.150 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCccccCCcchhhHHHHHHHHHHHcCCCCCCcHHHHH
Q 046854 38 ECTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSWYGRWGVCFIYSTWWAISGLVAAEKTYSNCLPIRK 117 (145)
Q Consensus 38 ~~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w~~~~g~~~~~~T~~al~aL~~~g~~~~~~~~v~~ 117 (145)
-=++.++.+|........ .+.+.+.+++++++++... +|.|...+-+ +.---++++..+..+-..+......++
T Consensus 46 WW~a~~~~~l~d~~~~tg---d~~y~~~a~~~~~~~~~~~--~~~~~~~~~D-D~a~~~la~~~aye~t~~~~yL~~A~~ 119 (349)
T 3k7x_A 46 WWLAHLVEVRLDAYLRTK---KQADLEVAEKTYLHNKNRN--GGTLIHDFYD-DMLWNALAAYRLYKATGKSIYLEDAQL 119 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHT--TSSSCCSBHH-HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcC--CCCCCccCcc-HHHHHHHHHHHHHHHHCCchHHHHHHH
Confidence 346666777776655432 2356678888999988752 3444322211 111122233333222222122334455
Q ss_pred HHHHH-HhcccC--CCCc
Q 046854 118 ATDFL-LNIQCG--DGGW 132 (145)
Q Consensus 118 a~~~L-~~~Q~~--dGgw 132 (145)
..++| .+.-++ .||+
T Consensus 120 l~~~l~~~~wd~~~gGGi 137 (349)
T 3k7x_A 120 VWQDLVDTGWNDIMGGGF 137 (349)
T ss_dssp HHHHHHHHTBCSGGGSCB
T ss_pred HHHHHHHhCCCCCCCCce
Confidence 66777 454333 3665
No 129
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=22.53 E-value=2.7e+02 Score=21.57 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhhCCccchhhhHHHHHHHHHHHHHhCCCCCCc--cccCC-----cchhhHHHHHHHHHH
Q 046854 39 CTASALKAMTLFQKLHPKHRKNEVNNFIINAVKFIEDLQKPDGSW--YGRWG-----VCFIYSTWWAISGLV 103 (145)
Q Consensus 39 ~T~~al~aL~~~~~~~~~~~~~~i~~~i~ka~~~L~~~Q~~dG~w--~~~~g-----~~~~~~T~~al~aL~ 103 (145)
....||.+|..+...+ .+..+.+++-|...|.+|+.. .+.++ ..+.+.--++|.|..
T Consensus 283 ~g~yAiaal~~~~~~D--------~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~~LlA~~ 346 (350)
T 3ren_A 283 PSIYSNVALIANYIGD--------KELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQ 346 (350)
T ss_dssp HHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHHHHHHHH
Confidence 3445555555544321 346788899999999988542 22222 345666666666654
No 130
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=22.32 E-value=1.3e+02 Score=26.00 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCCCccccCC------c-----chhhHHHHHHHHHHHc----CCC---CC-------------Cc
Q 046854 64 NFIINAVKFIEDLQKPDGSWYGRWG------V-----CFIYSTWWAISGLVAA----EKT---YS-------------NC 112 (145)
Q Consensus 64 ~~i~ka~~~L~~~Q~~dG~w~~~~g------~-----~~~~~T~~al~aL~~~----g~~---~~-------------~~ 112 (145)
+.+++.+..+.+.|.+||.+...|. . .....+.+-+.++... |-. .+ .-
T Consensus 375 ~~~r~~il~~~~~Q~~dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~e~~p~~~~~~~~~tl~ 454 (811)
T 3qde_A 375 ERARERLLDLAATQLEDGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILKEQVPFNNDPSKADTMF 454 (811)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGGSEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHHhhcccCCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHHhhhhhhcCCcccccHH
Confidence 3578889999999999999865332 1 1233456666666543 211 00 02
Q ss_pred HHHHHHHHHHHhcccCCC
Q 046854 113 LPIRKATDFLLNIQCGDG 130 (145)
Q Consensus 113 ~~v~~a~~~L~~~Q~~dG 130 (145)
+.++++++|+++...++|
T Consensus 455 eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 455 EHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp HHHHHHHHHHHTCBCTTS
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 578999999997666554
No 131
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=21.90 E-value=3e+02 Score=21.81 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHhCC-CCCCcc--ccCCcchhhHHHHHHHHHHHcCC--CCCCcHHHHHHHHHHHhc
Q 046854 61 EVNNFIINAVKFIEDLQK-PDGSWY--GRWGVCFIYSTWWAISGLVAAEK--TYSNCLPIRKATDFLLNI 125 (145)
Q Consensus 61 ~i~~~i~ka~~~L~~~Q~-~dG~w~--~~~g~~~~~~T~~al~aL~~~g~--~~~~~~~v~~a~~~L~~~ 125 (145)
.+...+++.+++++.... .-|++. ..||. .-+.+..++.++..... ..+.....++.++||+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~tp~Gl~~~~~WGs-~~~~~~~a~l~~~~~~~~~~~~y~~~A~~qldYiLG~ 343 (441)
T 1ia6_A 275 IYKDAIEFNFNYWKTQVTTTPGGLKWLSNWGV-LRYAAAESMVMLVYCKQNPDQSLLDLAKKQVDYILGD 343 (441)
T ss_dssp HHHHHHHHHHHHHHHTSCBCTTSCBCCCSTTH-HHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhcccCCCCceecCCcch-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Confidence 345567777777664432 235543 36774 23344555555543221 213456677899999985
No 132
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=21.10 E-value=1.1e+02 Score=17.36 Aligned_cols=25 Identities=24% Similarity=-0.050 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q 046854 96 WWAISGLVAAEKTYSNCLPIRKATDFLL 123 (145)
Q Consensus 96 ~~al~aL~~~g~~~~~~~~v~~a~~~L~ 123 (145)
.-|+.||..+|.. ...++++++-+.
T Consensus 18 ~ea~~AL~aLGY~---~~ea~kav~~v~ 42 (62)
T 1ixs_A 18 EEAVMALAALGFK---EAQARAVVLDLL 42 (62)
T ss_dssp HHHHHHHHHTTCC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHH
Confidence 4588999999987 466777777664
Done!