BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046857
MALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCL
ENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE
MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNN
LARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMP
MLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLR
KLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCH
GLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL
TSFCLDLQDTLDLFDAFSV

High Scoring Gene Products

Symbol, full name Information P value
AT3G44630 protein from Arabidopsis thaliana 0.00053

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046857
        (439 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2098145 - symbol:AT3G44630 species:3702 "Arabi...   123  0.00053   1


>TAIR|locus:2098145 [details] [associations]
            symbol:AT3G44630 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0006952 "defense response" evidence=IEA;ISS;TAS] [GO:0007165
            "signal transduction" evidence=IEA] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0043531 "ADP
            binding" evidence=IEA] Pfam:PF00560 InterPro:IPR000157
            InterPro:IPR001611 InterPro:IPR000767 InterPro:IPR002182
            InterPro:IPR003593 Pfam:PF00931 Pfam:PF01582 PRINTS:PR00364
            PROSITE:PS50104 SMART:SM00255 SMART:SM00382 GO:GO:0005524
            EMBL:CP002686 GO:GO:0007165 GO:GO:0006952 GO:GO:0043531
            GO:GO:0005622 GO:GO:0017111 InterPro:IPR011713 Pfam:PF07725
            UniGene:At.23854 IPI:IPI00538062 RefSeq:NP_850655.1
            ProteinModelPortal:F4J359 SMR:F4J359 EnsemblPlants:AT3G44630.3
            GeneID:823589 KEGG:ath:AT3G44630 PhylomeDB:F4J359 Uniprot:F4J359
        Length = 1240

 Score = 123 (48.4 bits), Expect = 0.00053, P = 0.00053
 Identities = 33/94 (35%), Positives = 53/94 (56%)

Query:   298 QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS 357
             QLR L+   L   + L KE   S +   +L+ L++ +CS L KL PPS +  NL GL ++
Sbjct:   737 QLRNLKWMDLSDSRDL-KELPSSIEKLTSLQILDLRDCSSLVKL-PPSINANNLQGLSLT 794

Query:   358 KCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEI 391
              C     V+ L A +N+ NL ++K+ +C  + E+
Sbjct:   795 NCS---RVVKLPAIENVTNLHQLKLQNCSSLIEL 825


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      439       410   0.00079  118 3  11 22  0.36    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  278 KB (2145 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.08u 0.10s 32.18t   Elapsed:  00:00:01
  Total cpu time:  32.08u 0.10s 32.18t   Elapsed:  00:00:01
  Start:  Fri May 10 03:06:56 2013   End:  Fri May 10 03:06:57 2013

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