BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046857
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWP|A Chain A, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|B Chain B, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|C Chain C, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWT|A Chain A, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|B Chain B, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|C Chain C, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MX2|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX5|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Utp
Length = 577
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 325 ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV- 383
A+LE+L+ S+ + ++ + ++ NL Q+ + L+N++ +S GR +V
Sbjct: 112 ADLEKLK-SKVIRTERPLSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVR 170
Query: 384 --DCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDA 436
D K E++ +Q G +PSLT CL Q +DL DA
Sbjct: 171 VWDVKN-AELLNNQFG------------------TMPSLTLACLTKQGQVDLNDA 206
>pdb|3T5Q|A Chain A, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|B Chain B, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|E Chain E, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|G Chain G, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|I Chain I, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|K Chain K, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
Length = 353
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 325 ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV- 383
A+LE+L+ S+ + ++ + ++ NL Q+ + L+N++ +S GR +V
Sbjct: 117 ADLEKLK-SKVIRTERPLSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVR 175
Query: 384 --DCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAF 437
D K E++ +Q G +PSLT CL Q +DL DA
Sbjct: 176 VWDVKN-AELLSNQFG------------------TMPSLTLACLTKQGQVDLNDAV 212
>pdb|3T5N|A Chain A, 1.8a Crystal Structure Of Lassa Virus Nucleoprotein In
Complex With Ssrna
Length = 354
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 325 ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV- 383
A+LE+L+ S+ + ++ + ++ NL Q+ + L+N++ +S GR +V
Sbjct: 118 ADLEKLK-SKVIRTERPLSAGVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVR 176
Query: 384 --DCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFDAF 437
D K E++ +Q G +PSLT CL Q +DL DA
Sbjct: 177 VWDVKN-AELLSNQFG------------------TMPSLTLACLTKQGQVDLNDAV 213
>pdb|2G9T|A Chain A, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|B Chain B, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|C Chain C, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|D Chain D, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|E Chain E, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|F Chain F, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|G Chain G, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|H Chain H, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|I Chain I, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|J Chain J, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|K Chain K, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|L Chain L, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|M Chain M, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|N Chain N, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|O Chain O, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|P Chain P, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|Q Chain Q, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|R Chain R, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|S Chain S, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|T Chain T, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|U Chain U, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|V Chain V, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|W Chain W, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2G9T|X Chain X, Crystal Structure Of The Sars Coronavirus Nsp10 At 2.1a
pdb|2GA6|A Chain A, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|B Chain B, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|C Chain C, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|D Chain D, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|E Chain E, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|F Chain F, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|G Chain G, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|H Chain H, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|I Chain I, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|J Chain J, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|K Chain K, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|L Chain L, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|M Chain M, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|N Chain N, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|O Chain O, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|P Chain P, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|Q Chain Q, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|R Chain R, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|S Chain S, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|T Chain T, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|U Chain U, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|V Chain V, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|W Chain W, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
pdb|2GA6|X Chain X, The Crystal Structure Of Sars Nsp10 Without Zinc Ion As
Additive
Length = 152
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMP 240
E N D+E G L+ ID P K FC+ G +++P
Sbjct: 60 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP 100
>pdb|3R24|B Chain B, Crystal Structure Of Nsp10/nsp16 Complex Of Sars
Coronavirus" If Possible
Length = 155
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMP 240
E N D+E G L+ ID P K FC+ G +++P
Sbjct: 63 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP 103
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 23/114 (20%)
Query: 325 ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV- 383
A+LE+L+ S+ ++ ++ + ++ NL Q+ + L+N++ ++ GR +V
Sbjct: 104 ADLEKLK-SKVTRTERPLSSGVYMGNLSSQQLDQRRALLNLIGMTNGSQGSQAGRDGVVR 162
Query: 384 --DCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSFCLDLQDTLDLFD 435
D K E++ +Q G +PSLT CL Q +DL D
Sbjct: 163 VWDVKN-AELLNNQFG------------------TMPSLTLACLTKQGQVDLND 197
>pdb|2XYV|B Chain B, Crystal Structure Of The Nsp16 Nsp10 Sars Coronavirus
Complex
Length = 122
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMP 240
E N D+E G L+ ID P K FC+ G +++P
Sbjct: 51 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKFVQIP 91
>pdb|2XYQ|B Chain B, Crystal Structure Of The Nsp16 Nsp10 Sars Coronavirus
Complex
pdb|2XYR|B Chain B, Crystal Structure Of The Nsp16 Nsp10 Sars Coronavirus
Complex
Length = 122
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMP 240
E N D+E G L+ ID P K FC+ G +++P
Sbjct: 51 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP 91
>pdb|2FYG|A Chain A, Crystal Structure Of Nsp10 From Sars Coronavirus
Length = 128
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMP 240
E N D+E G L+ ID P K FC+ G +++P
Sbjct: 56 EANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP 96
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 248 ENCPDMETFISNSVVH--VTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS 305
E+C + N + + V++ N++ LE+ L A + K+ PQL++ +
Sbjct: 617 EDCINRHNVYINGITYTPVSSTNEKDMYSFLEDMGLKAFTNSKIRKPKMC-PQLQQYEMH 675
Query: 306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINV 365
G ++ + E+D + A L +E ++K P +W +W L V G+ V
Sbjct: 676 GPEGLRVGFYESDVMGRGHARLVHVEEPHTETVRKYFPETW----IWDLVVVNSAGVAEV 731
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,696,996
Number of Sequences: 62578
Number of extensions: 446152
Number of successful extensions: 861
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 10
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)