Query 046857
Match_columns 439
No_of_seqs 155 out of 2313
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.7E-22 3.8E-27 218.7 15.3 359 6-419 89-464 (968)
2 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.2E-26 212.4 20.3 286 69-423 590-909 (1153)
3 PLN00113 leucine-rich repeat r 99.9 5E-22 1.1E-26 215.2 15.7 369 5-423 183-587 (968)
4 PLN03210 Resistant to P. syrin 99.9 2.3E-21 5.1E-26 210.8 18.8 314 10-392 589-910 (1153)
5 KOG4194 Membrane glycoprotein 99.7 3.1E-17 6.8E-22 155.5 4.6 140 41-189 77-231 (873)
6 KOG4194 Membrane glycoprotein 99.7 6.1E-17 1.3E-21 153.6 4.3 57 67-134 77-134 (873)
7 KOG0444 Cytoskeletal regulator 99.6 8.5E-18 1.8E-22 160.5 -4.2 341 8-421 30-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 1.2E-17 2.6E-22 159.4 -7.1 343 7-417 4-349 (1255)
9 KOG0472 Leucine-rich repeat pr 99.6 2.5E-17 5.5E-22 149.6 -6.0 217 5-259 63-293 (565)
10 KOG4341 F-box protein containi 99.4 7.6E-15 1.7E-19 134.4 -4.1 313 42-381 138-458 (483)
11 KOG0472 Leucine-rich repeat pr 99.3 9.5E-14 2.1E-18 126.6 -3.7 347 6-421 156-542 (565)
12 PRK15387 E3 ubiquitin-protein 99.3 3.4E-11 7.4E-16 123.4 12.3 254 42-386 201-456 (788)
13 KOG4341 F-box protein containi 99.2 1.5E-13 3.3E-18 126.0 -6.1 167 238-421 266-440 (483)
14 PRK15387 E3 ubiquitin-protein 99.2 1.1E-10 2.4E-15 119.7 13.2 257 11-365 202-460 (788)
15 PRK15370 E3 ubiquitin-protein 99.2 1.3E-10 2.7E-15 119.9 10.1 244 68-386 178-426 (754)
16 KOG0618 Serine/threonine phosp 99.1 6E-12 1.3E-16 126.1 0.2 315 14-416 2-319 (1081)
17 KOG0618 Serine/threonine phosp 99.1 7.2E-12 1.6E-16 125.6 0.6 266 41-360 218-487 (1081)
18 KOG4658 Apoptotic ATPase [Sign 99.1 8.5E-11 1.8E-15 123.0 7.2 182 40-253 543-730 (889)
19 PRK15370 E3 ubiquitin-protein 99.0 5.1E-10 1.1E-14 115.4 9.0 224 42-360 199-426 (754)
20 KOG0617 Ras suppressor protein 99.0 1E-11 2.2E-16 100.8 -2.9 162 4-195 27-188 (264)
21 KOG4658 Apoptotic ATPase [Sign 98.9 1.1E-09 2.4E-14 114.7 3.0 84 8-101 543-627 (889)
22 cd00116 LRR_RI Leucine-rich re 98.7 2.4E-09 5.1E-14 101.4 0.0 119 66-190 21-148 (319)
23 KOG0617 Ras suppressor protein 98.7 9.6E-10 2.1E-14 89.4 -3.0 106 66-188 31-136 (264)
24 KOG2120 SCF ubiquitin ligase, 98.4 8.2E-09 1.8E-13 91.3 -4.1 187 43-251 186-374 (419)
25 cd00116 LRR_RI Leucine-rich re 98.4 1.4E-07 2.9E-12 89.3 3.2 223 6-250 47-288 (319)
26 KOG3207 Beta-tubulin folding c 98.4 4.3E-08 9.3E-13 91.2 -0.4 214 7-249 118-335 (505)
27 KOG3207 Beta-tubulin folding c 98.4 1.6E-07 3.4E-12 87.5 3.3 161 65-250 118-281 (505)
28 KOG4237 Extracellular matrix p 98.4 1.2E-08 2.7E-13 93.5 -4.6 268 69-384 68-355 (498)
29 KOG2120 SCF ubiquitin ligase, 98.3 2.7E-08 5.9E-13 88.1 -3.2 37 323-359 336-373 (419)
30 PF14580 LRR_9: Leucine-rich r 98.2 2.6E-06 5.6E-11 72.0 5.4 129 41-188 18-149 (175)
31 KOG4237 Extracellular matrix p 98.1 1.4E-07 3E-12 86.8 -4.7 283 79-416 56-355 (498)
32 PF14580 LRR_9: Leucine-rich r 98.0 4.7E-06 1E-10 70.4 3.5 136 5-163 14-150 (175)
33 KOG1947 Leucine rich repeat pr 98.0 7.4E-07 1.6E-11 89.4 -2.2 91 151-250 241-331 (482)
34 PF13855 LRR_8: Leucine rich r 97.9 1.2E-05 2.5E-10 55.5 3.2 58 325-385 1-59 (61)
35 PRK15386 type III secretion pr 97.9 6.6E-05 1.4E-09 71.5 9.3 38 152-195 51-88 (426)
36 PRK15386 type III secretion pr 97.8 5.3E-05 1.1E-09 72.1 7.5 138 8-189 50-187 (426)
37 KOG1947 Leucine rich repeat pr 97.7 3.2E-06 6.9E-11 84.8 -2.3 120 66-193 186-309 (482)
38 KOG1259 Nischarin, modulator o 97.7 1.7E-05 3.7E-10 70.8 2.5 108 295-420 305-412 (490)
39 KOG0532 Leucine-rich repeat (L 97.6 4.9E-06 1.1E-10 80.3 -2.9 125 40-189 119-244 (722)
40 PF13855 LRR_8: Leucine rich r 97.5 0.00026 5.7E-09 48.7 5.9 59 297-360 1-60 (61)
41 COG4886 Leucine-rich repeat (L 97.4 0.0001 2.3E-09 71.9 3.4 172 41-250 115-287 (394)
42 KOG1909 Ran GTPase-activating 97.4 1.9E-05 4.2E-10 71.9 -1.7 190 40-251 90-309 (382)
43 KOG3665 ZYG-1-like serine/thre 97.4 6.1E-05 1.3E-09 77.6 1.7 34 66-101 171-204 (699)
44 PLN03150 hypothetical protein; 97.2 0.00049 1.1E-08 71.0 6.2 68 117-190 434-501 (623)
45 COG4886 Leucine-rich repeat (L 97.1 0.00085 1.8E-08 65.5 6.6 170 64-271 112-282 (394)
46 PLN03150 hypothetical protein; 97.1 0.0005 1.1E-08 70.9 5.0 111 43-167 419-529 (623)
47 KOG1259 Nischarin, modulator o 97.1 0.00011 2.5E-09 65.7 0.3 124 68-223 284-409 (490)
48 KOG0532 Leucine-rich repeat (L 96.8 0.00024 5.2E-09 69.0 -0.4 152 6-189 117-270 (722)
49 PF12799 LRR_4: Leucine Rich r 96.7 0.0015 3.4E-08 41.3 2.8 33 69-102 2-34 (44)
50 KOG2982 Uncharacterized conser 96.7 0.0014 3.1E-08 58.8 3.1 111 298-413 174-285 (418)
51 KOG3864 Uncharacterized conser 96.5 0.00022 4.8E-09 60.3 -3.0 66 346-418 122-187 (221)
52 KOG3665 ZYG-1-like serine/thre 96.4 0.00086 1.9E-08 69.3 0.4 59 42-101 122-182 (699)
53 KOG1909 Ran GTPase-activating 96.3 0.00037 8E-09 63.8 -2.6 92 151-251 155-252 (382)
54 KOG2982 Uncharacterized conser 96.3 0.0014 3.1E-08 58.8 0.9 212 40-275 69-288 (418)
55 PF12799 LRR_4: Leucine Rich r 95.8 0.012 2.6E-07 37.2 3.3 35 92-136 1-35 (44)
56 KOG1859 Leucine-rich repeat pr 95.2 0.0011 2.3E-08 66.5 -4.6 107 293-418 183-290 (1096)
57 KOG3864 Uncharacterized conser 95.1 0.0098 2.1E-07 50.6 1.2 70 120-192 120-189 (221)
58 KOG1644 U2-associated snRNP A' 94.5 0.049 1.1E-06 46.5 3.9 88 40-136 62-151 (233)
59 KOG1644 U2-associated snRNP A' 94.2 0.075 1.6E-06 45.4 4.4 37 151-188 111-149 (233)
60 KOG2739 Leucine-rich acidic nu 94.1 0.053 1.2E-06 48.1 3.6 117 64-192 39-156 (260)
61 KOG2123 Uncharacterized conser 94.1 0.0037 8E-08 55.7 -3.6 104 9-131 18-123 (388)
62 KOG4579 Leucine-rich repeat (L 94.0 0.0027 5.9E-08 50.5 -4.0 34 67-101 76-109 (177)
63 KOG0531 Protein phosphatase 1, 93.3 0.034 7.4E-07 54.6 1.0 106 64-189 91-196 (414)
64 PF00560 LRR_1: Leucine Rich R 93.2 0.058 1.3E-06 28.3 1.4 21 69-90 1-21 (22)
65 KOG0531 Protein phosphatase 1, 92.8 0.06 1.3E-06 52.9 2.0 104 40-164 93-197 (414)
66 KOG2739 Leucine-rich acidic nu 92.7 0.039 8.5E-07 48.9 0.5 91 39-136 62-154 (260)
67 KOG2123 Uncharacterized conser 92.6 0.01 2.2E-07 53.0 -3.3 34 238-271 86-122 (388)
68 KOG1859 Leucine-rich repeat pr 92.5 0.0041 8.9E-08 62.6 -6.4 107 64-189 183-289 (1096)
69 PF13306 LRR_5: Leucine rich r 91.5 0.97 2.1E-05 35.8 7.4 60 6-77 8-67 (129)
70 PF13504 LRR_7: Leucine rich r 90.4 0.21 4.6E-06 24.3 1.5 16 68-84 1-16 (17)
71 PF13306 LRR_5: Leucine rich r 87.3 2.9 6.3E-05 33.0 7.2 55 323-383 56-111 (129)
72 KOG4579 Leucine-rich repeat (L 86.3 0.096 2.1E-06 41.9 -1.9 58 325-386 53-111 (177)
73 smart00367 LRR_CC Leucine-rich 84.4 0.59 1.3E-05 25.5 1.2 18 348-365 1-18 (26)
74 COG5238 RNA1 Ran GTPase-activa 83.2 0.19 4.1E-06 45.0 -1.7 136 40-189 90-252 (388)
75 COG5238 RNA1 Ran GTPase-activa 82.7 1.3 2.9E-05 39.8 3.3 123 9-135 29-167 (388)
76 PF13516 LRR_6: Leucine Rich r 57.4 6.4 0.00014 20.7 1.1 13 9-21 1-13 (24)
77 smart00369 LRR_TYP Leucine-ric 57.1 7.2 0.00016 21.0 1.3 19 68-87 2-20 (26)
78 smart00370 LRR Leucine-rich re 57.1 7.2 0.00016 21.0 1.3 19 68-87 2-20 (26)
79 smart00364 LRR_BAC Leucine-ric 34.1 25 0.00055 19.3 1.1 18 68-86 2-19 (26)
80 smart00365 LRR_SD22 Leucine-ri 29.0 39 0.00085 18.5 1.3 9 93-101 3-11 (26)
81 KOG3763 mRNA export factor TAP 22.5 53 0.0011 33.0 1.8 38 40-78 216-254 (585)
82 smart00368 LRR_RI Leucine rich 21.4 51 0.0011 18.1 0.9 12 10-21 2-13 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.7e-22 Score=218.74 Aligned_cols=359 Identities=16% Similarity=0.076 Sum_probs=179.2
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS 85 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 85 (439)
|..+++|+.|+|++|.....+|..... .+++|++|+++++ .+....+...+++|++|++++|.....+|
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~-------~l~~L~~L~Ls~n----~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p 157 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFT-------TSSSLRYLNLSNN----NFTGSIPRGSIPNLETLDLSNNMLSGEIP 157 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhc-------cCCCCCEEECcCC----ccccccCccccCCCCEEECcCCcccccCC
Confidence 556778888888887655455543321 3567777777773 22111123456777777777765444566
Q ss_pred cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857 86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
..++.+++|++|++++|. ....+|..+.++++|+.|+++++.....++... ..+++|+.|++.++ .
T Consensus 158 ~~~~~l~~L~~L~L~~n~---------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n-~ 223 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNV---------LVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL----GQMKSLKWIYLGYN-N 223 (968)
T ss_pred hHHhcCCCCCEEECccCc---------ccccCChhhhhCcCCCeeeccCCCCcCcCChHH----cCcCCccEEECcCC-c
Confidence 667777777777777632 222344455556667777776554333333222 34566666666665 3
Q ss_pred cccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEE
Q 046857 166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSL 245 (439)
Q Consensus 166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 245 (439)
+...+|.. ++.+++|++|++++|.....++. .+..+ ++|+.|++.++.....++.... .+++|+.|
T Consensus 224 l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~---------~l~~l-~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L 289 (968)
T PLN00113 224 LSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPS---------SLGNL-KNLQYLFLYQNKLSGPIPPSIF---SLQKLISL 289 (968)
T ss_pred cCCcCChh-HhcCCCCCEEECcCceeccccCh---------hHhCC-CCCCEEECcCCeeeccCchhHh---hccCcCEE
Confidence 33334544 56666666666666532222211 01112 4555555555432222222221 34455555
Q ss_pred eEecCCCcceeccccccccccCCCCC--CccCcceeeeeccc--------------cc-cccccccccCccceEeecCCC
Q 046857 246 TIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQ--------------VQ-PLFDEKVAFPQLRKLRLSGLH 308 (439)
Q Consensus 246 ~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~--------------~~-~~~~~~~~~~~L~~L~l~~~~ 308 (439)
++.+|. +....+. ....+++|+.| +.+.+.+.++.... .. ........+++|+.|+++++.
T Consensus 290 ~Ls~n~-l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 290 DLSDNS-LSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred ECcCCe-eccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 554432 2211111 11234444444 22222221110000 00 000112234455555555432
Q ss_pred CceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccc
Q 046857 309 KVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMM 388 (439)
Q Consensus 309 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l 388 (439)
-...++ ..+. .+++|+.|+++++.....+|..+..+++|+.|++.+|+ ++..+|.. +..+++|+.|+++++. +
T Consensus 368 l~~~~p-~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~Ls~N~-l 440 (968)
T PLN00113 368 LTGEIP-EGLC---SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPSE-FTKLPLVYFLDISNNN-L 440 (968)
T ss_pred eEeeCC-hhHh---CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECChh-HhcCCCCCEEECcCCc-c
Confidence 211111 1111 34556666666655444555556667777777777654 44333543 4567777777777763 3
Q ss_pred hhhccccccccCCCceEeccccEEecCCCCC
Q 046857 389 EEIIQSQVGEETEDCIVFGKLRYLELDCLPS 419 (439)
Q Consensus 389 ~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~ 419 (439)
..... .....+++|+.|++++|.-
T Consensus 441 ~~~~~-------~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 441 QGRIN-------SRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred cCccC-------hhhccCCCCcEEECcCcee
Confidence 22221 1345678889998888753
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.5e-21 Score=212.40 Aligned_cols=286 Identities=20% Similarity=0.326 Sum_probs=145.2
Q ss_pred CccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC
Q 046857 69 SLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP 148 (439)
Q Consensus 69 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~ 148 (439)
+|+.|++.++ .++.+|..+ ...+|++|++.+ ..+..+|.++..+++|+.|+++++..+..++..
T Consensus 590 ~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~----------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---- 653 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQG----------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---- 653 (1153)
T ss_pred ccEEEEecCC-CCCCCCCcC-CccCCcEEECcC----------ccccccccccccCCCCCEEECCCCCCcCcCCcc----
Confidence 3555555553 344555444 345555555555 223334444445555555555555444444321
Q ss_pred cCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccc
Q 046857 149 VRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKR 228 (439)
Q Consensus 149 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 228 (439)
..+++|+.|++.+|..+.. +|.. +..+++|+.|++++|+.++.++.. . .+ ++|+.|++++|..++.
T Consensus 654 -s~l~~Le~L~L~~c~~L~~-lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~--i--------~l-~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 654 -SMATNLETLKLSDCSSLVE-LPSS-IQYLNKLEDLDMSRCENLEILPTG--I--------NL-KSLYRLNLSGCSRLKS 719 (1153)
T ss_pred -ccCCcccEEEecCCCCccc-cchh-hhccCCCCEEeCCCCCCcCccCCc--C--------CC-CCCCEEeCCCCCCccc
Confidence 1345555555555555543 3433 455555555555555555444321 0 02 5555555555554444
Q ss_pred cccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC----------------------------------Ccc
Q 046857 229 FCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP----------------------------------QKL 274 (439)
Q Consensus 229 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L----------------------------------~~~ 274 (439)
++.. .++|+.|++.++ .+..++.. ..+++|+.| ++.
T Consensus 720 ~p~~------~~nL~~L~L~~n-~i~~lP~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 720 FPDI------STNISWLDLDET-AIEEFPSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred cccc------cCCcCeeecCCC-cccccccc---ccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 4321 134555555443 22322211 123333333 111
Q ss_pred CcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceE
Q 046857 275 TLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGL 354 (439)
Q Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 354 (439)
.+..++ .....+++|+.|++.+|..++.++... .+++|++|++++|..+..+|.. .++|+.|
T Consensus 790 ~l~~lP----------~si~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L 851 (1153)
T PLN03210 790 SLVELP----------SSIQNLHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTFPDI---STNISDL 851 (1153)
T ss_pred CccccC----------hhhhCCCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCcccccccc---ccccCEe
Confidence 111111 123344555555555555555544331 3455555555555555544432 2455555
Q ss_pred EEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCccee
Q 046857 355 QVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSF 423 (439)
Q Consensus 355 ~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~ 423 (439)
++.+ +.++.+ |.. +..+++|+.|++.+|++++.++. .+..+++|+.+++++|++|+.+
T Consensus 852 ~Ls~-n~i~~i-P~s-i~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 852 NLSR-TGIEEV-PWW-IEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ECCC-CCCccC-hHH-HhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCcccccc
Confidence 5554 345554 543 45678888888888888887765 4566788888888888888754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=5e-22 Score=215.22 Aligned_cols=369 Identities=15% Similarity=0.067 Sum_probs=194.2
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
.++++++|++|++++|...+.+|..++ .+++|++|+++++.-....+ ..+..+++|++|++.+|.....+
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~--------~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELG--------QMKSLKWIYLGYNNLSGEIP--YEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHc--------CcCCccEEECcCCccCCcCC--hhHhcCCCCCEEECcCceecccc
Confidence 467899999999999987777776555 46788888888742212222 22567788888888877544467
Q ss_pred ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC------------------C
Q 046857 85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ------------------A 146 (439)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~------------------~ 146 (439)
|..++.+++|++|++++|... ..+|..+..+++|++|+++++.....++... .
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLS---------GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred ChhHhCCCCCCEEECcCCeee---------ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 777777888888887774432 1223333344555555555443211211111 0
Q ss_pred CC--cCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857 147 LP--VRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 147 l~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
++ ...+++|+.|++.+|. +...+|.. ++.+++|+.|+++++.....++. .+... ++|+.|++.++.
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~-l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~---------~~~~~-~~L~~L~l~~n~ 391 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNK-FSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPE---------GLCSS-GNLFKLILFSNS 391 (968)
T ss_pred CChhHhcCCCCCEEECcCCC-CcCcCChH-HhCCCCCcEEECCCCeeEeeCCh---------hHhCc-CCCCEEECcCCE
Confidence 00 0234444444444432 22223332 44444555555544322111110 00001 334444444332
Q ss_pred cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccc--------------c
Q 046857 225 KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQ--------------P 288 (439)
Q Consensus 225 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~--------------~ 288 (439)
....++... ..+++|+.|++.+|. +....+.. ...+++|+.| +.+.+.+.++...... .
T Consensus 392 l~~~~p~~~---~~~~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 392 LEGEIPKSL---GACRSLRRVRLQDNS-FSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred ecccCCHHH---hCCCCCCEEECcCCE-eeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 222222211 134555555555532 22211111 1233444433 2222222111000000 0
Q ss_pred ccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccCh
Q 046857 289 LFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTL 368 (439)
Q Consensus 289 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~ 368 (439)
..+.....++|+.|+++++.-...++ ..+. .+++|++|++++|.....+|..+..+++|++|++++|. ++..+|.
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~-~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~ 541 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVP-RKLG---SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ-LSGQIPA 541 (968)
T ss_pred ecCcccccccceEEECcCCccCCccC-hhhh---hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc-ccccCCh
Confidence 00011123466666666653222221 1122 56788888888887666788888888999999998864 6655566
Q ss_pred hHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCccee
Q 046857 369 SASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSF 423 (439)
Q Consensus 369 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~ 423 (439)
. +..+++|+.|++++|.....++. .+.+++.|+++++++|+-...+
T Consensus 542 ~-~~~l~~L~~L~Ls~N~l~~~~p~--------~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 542 S-FSEMPVLSQLDLSQNQLSGEIPK--------NLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred h-HhCcccCCEEECCCCcccccCCh--------hHhcCcccCEEeccCCcceeeC
Confidence 4 56788999999998855444543 5677889999999998755433
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.3e-21 Score=210.82 Aligned_cols=314 Identities=18% Similarity=0.228 Sum_probs=190.2
Q ss_pred ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCc
Q 046857 10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIV 89 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 89 (439)
++|+.|.+.+++ ++.+|..+. +.+|+.|++.+ .++..++.+ +..+++|+.|++++|..++.+|. ++
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~f~---------~~~L~~L~L~~-s~l~~L~~~--~~~l~~Lk~L~Ls~~~~l~~ip~-ls 654 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSNFR---------PENLVKLQMQG-SKLEKLWDG--VHSLTGLRNIDLRGSKNLKEIPD-LS 654 (1153)
T ss_pred cccEEEEecCCC-CCCCCCcCC---------ccCCcEEECcC-ccccccccc--cccCCCCCEEECCCCCCcCcCCc-cc
Confidence 457888888764 566666543 46778888877 344444332 45677788888877777777764 56
Q ss_pred CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857 90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA 169 (439)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 169 (439)
.+++|++|++++ +.....+|..+..+++|+.|++++|..++.++... .+++|+.|++.+|..+..
T Consensus 655 ~l~~Le~L~L~~---------c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-----~l~sL~~L~Lsgc~~L~~- 719 (1153)
T PLN03210 655 MATNLETLKLSD---------CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-----NLKSLYRLNLSGCSRLKS- 719 (1153)
T ss_pred cCCcccEEEecC---------CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-----CCCCCCEEeCCCCCCccc-
Confidence 677888888776 33445566666777778888888777776655433 467777888877766554
Q ss_pred cchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCC-----cccCCCCccE
Q 046857 170 IPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTG-----NIIEMPMLWS 244 (439)
Q Consensus 170 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~L~~ 244 (439)
+|.. ..+|++|++.++ .++.++... .+++|+.|.+.++.... ++.... ....+++|+.
T Consensus 720 ~p~~----~~nL~~L~L~~n-~i~~lP~~~-----------~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 720 FPDI----STNISWLDLDET-AIEEFPSNL-----------RLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred cccc----cCCcCeeecCCC-ccccccccc-----------cccccccccccccchhh-ccccccccchhhhhccccchh
Confidence 3321 356777777754 344433210 02555555555432211 000000 0112345666
Q ss_pred EeEecCCCcceeccccccccccCCCCC---CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccc
Q 046857 245 LTIENCPDMETFISNSVVHVTTDNKEP---QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESN 321 (439)
Q Consensus 245 L~l~~c~~l~~~~~~~~~~~~~~L~~L---~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 321 (439)
|++.+|+.+..+|.. ..++++|+.| +|..++.++. ...+++|+.|++++|..+..++.
T Consensus 783 L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~-----------~~~L~sL~~L~Ls~c~~L~~~p~------ 843 (1153)
T PLN03210 783 LFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPT-----------GINLESLESLDLSGCSRLRTFPD------ 843 (1153)
T ss_pred eeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCC-----------CCCccccCEEECCCCCccccccc------
Confidence 666655544444321 2345555555 4444444321 22467788888888777665431
Q ss_pred cccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhc
Q 046857 322 KVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEII 392 (439)
Q Consensus 322 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~ 392 (439)
..++|++|+++++ .++.+|..+..+++|+.|++++|++++.+ |.. ...+++|+.+++.+|.+++.+.
T Consensus 844 -~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l-~~~-~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 844 -ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRV-SLN-ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCcc-Ccc-cccccCCCeeecCCCccccccc
Confidence 2357778887764 56677777777888888888888888776 443 3567788888888887776553
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=3.1e-17 Score=155.49 Aligned_cols=140 Identities=16% Similarity=0.246 Sum_probs=76.0
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCc-----------
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGN----------- 109 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~----------- 109 (439)
++.-++|++++ .++.+++.. .+.++++|+++++.+ +.+..+|...+...+|+.|++..|.+.....
T Consensus 77 p~~t~~Ldlsn-Nkl~~id~~-~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLSN-NKLSHIDFE-FFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred ccceeeeeccc-cccccCcHH-HHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 45667788888 555555332 256788888888888 4788888877777778888887744321110
Q ss_pred --C-chhhhhhhhhhc-CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceee
Q 046857 110 --L-NSTIQKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLE 185 (439)
Q Consensus 110 --~-~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 185 (439)
+ .+.+..++..-. .-.++++|++.++. ++.+..+. + ..+.+|..|.++++ +++. +|...++.+++|+.|+
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~-F--~~lnsL~tlkLsrN-ritt-Lp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH-F--DSLNSLLTLKLSRN-RITT-LPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeecccc-cccccccc-c--cccchheeeecccC-cccc-cCHHHhhhcchhhhhh
Confidence 0 011122222111 12445555555332 33332222 1 23455666666553 3443 4555566666666666
Q ss_pred eccc
Q 046857 186 VRNC 189 (439)
Q Consensus 186 l~~~ 189 (439)
+..+
T Consensus 228 LnrN 231 (873)
T KOG4194|consen 228 LNRN 231 (873)
T ss_pred cccc
Confidence 6643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=6.1e-17 Score=153.57 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=39.8
Q ss_pred CCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccC
Q 046857 67 FPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSH 134 (439)
Q Consensus 67 l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 134 (439)
.+.-+.|+++++ ++..+ ++++-.++||+++++.. +....+|+......+|+.|++.+
T Consensus 77 p~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~----------N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 77 PSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNK----------NELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred ccceeeeecccc-ccccCcHHHHhcCCcceeeeecc----------chhhhcccccccccceeEEeeec
Confidence 355778999994 66643 45678899999999999 44455555555556666666663
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=8.5e-18 Score=160.47 Aligned_cols=341 Identities=15% Similarity=0.168 Sum_probs=203.0
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc--ccc
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK--TFS 85 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~ 85 (439)
.++.++-|.|.+- .++.+|+..+ .+.+|++|.+.. .++..+. ..+..+|+||.+.++.+ .++ .+|
T Consensus 30 qMt~~~WLkLnrt-~L~~vPeEL~--------~lqkLEHLs~~H-N~L~~vh--GELs~Lp~LRsv~~R~N-~LKnsGiP 96 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRT-KLEQVPEELS--------RLQKLEHLSMAH-NQLISVH--GELSDLPRLRSVIVRDN-NLKNSGIP 96 (1255)
T ss_pred HhhheeEEEechh-hhhhChHHHH--------HHhhhhhhhhhh-hhhHhhh--hhhccchhhHHHhhhcc-ccccCCCC
Confidence 3455555555553 3555554433 466777777766 2222222 23566788888888774 444 578
Q ss_pred cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857 86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
.++-++.-|..|+++. +..+++|..+...+++-.|+++++ +++.||... + -++..|-.|+++.+ .
T Consensus 97 ~diF~l~dLt~lDLSh----------NqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~l-f--inLtDLLfLDLS~N-r 161 (1255)
T KOG0444|consen 97 TDIFRLKDLTILDLSH----------NQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSL-F--INLTDLLFLDLSNN-R 161 (1255)
T ss_pred chhcccccceeeecch----------hhhhhcchhhhhhcCcEEEEcccC-ccccCCchH-H--HhhHhHhhhccccc-h
Confidence 8888888888888887 667778888888888888888844 466665543 1 13555667788774 5
Q ss_pred cccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccc-ccccccCCCcccCCCCccE
Q 046857 166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK-LKRFCNFTGNIIEMPMLWS 244 (439)
Q Consensus 166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~ 244 (439)
+.. .|.. ++.+..|++|++++++-.. +.+..+.. + ++|++|.+++... +.++|.+.. .+.+|..
T Consensus 162 Le~-LPPQ-~RRL~~LqtL~Ls~NPL~h--fQLrQLPs-------m-tsL~vLhms~TqRTl~N~Ptsld---~l~NL~d 226 (1255)
T KOG0444|consen 162 LEM-LPPQ-IRRLSMLQTLKLSNNPLNH--FQLRQLPS-------M-TSLSVLHMSNTQRTLDNIPTSLD---DLHNLRD 226 (1255)
T ss_pred hhh-cCHH-HHHHhhhhhhhcCCChhhH--HHHhcCcc-------c-hhhhhhhcccccchhhcCCCchh---hhhhhhh
Confidence 554 4555 7778888888888764221 11111111 3 6667777766543 345555543 6778888
Q ss_pred EeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcccc
Q 046857 245 LTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNK 322 (439)
Q Consensus 245 L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 322 (439)
++++. +++..+| .+ +..+++|++| +.+.++.+-- ..+.+.+|++|+++.. .++.++....
T Consensus 227 vDlS~-N~Lp~vP-ec-ly~l~~LrrLNLS~N~iteL~~----------~~~~W~~lEtLNlSrN-QLt~LP~avc---- 288 (1255)
T KOG0444|consen 227 VDLSE-NNLPIVP-EC-LYKLRNLRRLNLSGNKITELNM----------TEGEWENLETLNLSRN-QLTVLPDAVC---- 288 (1255)
T ss_pred ccccc-cCCCcch-HH-HhhhhhhheeccCcCceeeeec----------cHHHHhhhhhhccccc-hhccchHHHh----
Confidence 88876 4454443 22 2466777777 6666665321 2344557777777663 3454433311
Q ss_pred ccCCcceEEeecCC-CcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCC
Q 046857 323 VFANLERLEISECS-KLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETE 401 (439)
Q Consensus 323 ~~~~L~~L~l~~c~-~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 401 (439)
.++.|+.|.+.++. .+..+|.+++++.+|+.+...+ +.++-+ |+++ ..+++|+.|.++.. .+-+++.
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElV-PEgl-cRC~kL~kL~L~~N-rLiTLPe-------- 356 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV-PEGL-CRCVKLQKLKLDHN-RLITLPE-------- 356 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccC-chhh-hhhHHHHHhccccc-ceeechh--------
Confidence 35566666665443 2335667777777777766664 344443 6643 35666776666544 4444443
Q ss_pred CceEeccccEEecCCCCCcc
Q 046857 402 DCIVFGKLRYLELDCLPSLT 421 (439)
Q Consensus 402 ~~~~l~~L~~l~l~~c~~l~ 421 (439)
.+--++.|+.|++++.|+|.
T Consensus 357 aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhcCCcceeeccCCcCcc
Confidence 34446677777777777775
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=1.2e-17 Score=159.43 Aligned_cols=343 Identities=22% Similarity=0.225 Sum_probs=236.0
Q ss_pred CccccCceEEEccccccce-eccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857 7 GIPNSLVNLNVSYCEKIEE-IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS 85 (439)
Q Consensus 7 ~~~~~L~~L~l~~c~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 85 (439)
+-++-.+-.++++|..-+. .|.+.. .++.++.|.|.. +.+..++.. ++.+.+|++|.+.++ ++..+-
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~--------qMt~~~WLkLnr-t~L~~vPeE--L~~lqkLEHLs~~HN-~L~~vh 71 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVE--------QMTQMTWLKLNR-TKLEQVPEE--LSRLQKLEHLSMAHN-QLISVH 71 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHH--------HhhheeEEEech-hhhhhChHH--HHHHhhhhhhhhhhh-hhHhhh
Confidence 3445556666676665532 233332 577888888877 555555433 667888888888884 566665
Q ss_pred cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857 86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
-++..+|.|+.+.+..+.+ ..+.+|..+..+..|..|+++. +++.+.|.+. +.-.++..|+++++ +
T Consensus 72 GELs~Lp~LRsv~~R~N~L--------KnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~L----E~AKn~iVLNLS~N-~ 137 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNL--------KNSGIPTDIFRLKDLTILDLSH-NQLREVPTNL----EYAKNSIVLNLSYN-N 137 (1255)
T ss_pred hhhccchhhHHHhhhcccc--------ccCCCCchhcccccceeeecch-hhhhhcchhh----hhhcCcEEEEcccC-c
Confidence 5667788888888776332 2244677777899999999995 4588777665 46678999999885 5
Q ss_pred cccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEE
Q 046857 166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSL 245 (439)
Q Consensus 166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L 245 (439)
+.. +|...+.++.-|-.|+++. +.++.+|+.- ..+ ..|++|+|++.+- ..+... ..+.+.+|+.|
T Consensus 138 Iet-IPn~lfinLtDLLfLDLS~-NrLe~LPPQ~---------RRL-~~LqtL~Ls~NPL-~hfQLr--QLPsmtsL~vL 202 (1255)
T KOG0444|consen 138 IET-IPNSLFINLTDLLFLDLSN-NRLEMLPPQI---------RRL-SMLQTLKLSNNPL-NHFQLR--QLPSMTSLSVL 202 (1255)
T ss_pred ccc-CCchHHHhhHhHhhhcccc-chhhhcCHHH---------HHH-hhhhhhhcCCChh-hHHHHh--cCccchhhhhh
Confidence 655 7888899999999999996 4777776521 113 7899999998752 222111 11245566667
Q ss_pred eEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccc
Q 046857 246 TIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKV 323 (439)
Q Consensus 246 ~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 323 (439)
.+++-..-....|.+ +.++.+|..+ +++++..++- +.-.+++|+.|++++. .++.+.... +.
T Consensus 203 hms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~vPe----------cly~l~~LrrLNLS~N-~iteL~~~~----~~ 266 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPIVPE----------CLYKLRNLRRLNLSGN-KITELNMTE----GE 266 (1255)
T ss_pred hcccccchhhcCCCc-hhhhhhhhhccccccCCCcchH----------HHhhhhhhheeccCcC-ceeeeeccH----HH
Confidence 776643222222322 2466677766 7887776532 3456789999999984 566663331 15
Q ss_pred cCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCc
Q 046857 324 FANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDC 403 (439)
Q Consensus 324 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 403 (439)
..+|++|+++.+ +++.+|..+.+++.|++|.+.+ ++++.-...+.++.+..|+.+...+. +++-++. .+
T Consensus 267 W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPE--------gl 335 (1255)
T KOG0444|consen 267 WENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE--------GL 335 (1255)
T ss_pred Hhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccccCch--------hh
Confidence 668999999885 7889999999999999999987 55664433346788999999888876 7777776 78
Q ss_pred eEeccccEEecCCC
Q 046857 404 IVFGKLRYLELDCL 417 (439)
Q Consensus 404 ~~l~~L~~l~l~~c 417 (439)
..++.|+.|.+.+.
T Consensus 336 cRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHN 349 (1255)
T ss_pred hhhHHHHHhccccc
Confidence 88999999887654
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=2.5e-17 Score=149.60 Aligned_cols=217 Identities=21% Similarity=0.261 Sum_probs=117.6
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
.+.++..|+.|++.+++ +..+|+.+++ +.+++.|+.+. .++.+++ +.++..++|+.++.++ ..+..+
T Consensus 63 dl~nL~~l~vl~~~~n~-l~~lp~aig~--------l~~l~~l~vs~-n~ls~lp--~~i~s~~~l~~l~~s~-n~~~el 129 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNK-LSQLPAAIGE--------LEALKSLNVSH-NKLSELP--EQIGSLISLVKLDCSS-NELKEL 129 (565)
T ss_pred hhhcccceeEEEeccch-hhhCCHHHHH--------HHHHHHhhccc-chHhhcc--HHHhhhhhhhhhhccc-cceeec
Confidence 34456666666666665 3334444442 33555555555 2222222 2244555555555555 344455
Q ss_pred ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
|.+++.+..|+.++... +.++.+|..+..+.+|..+.+.++. +++.+... -.+..|++|+...
T Consensus 130 ~~~i~~~~~l~dl~~~~----------N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~----i~m~~L~~ld~~~-- 192 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATN----------NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH----IAMKRLKHLDCNS-- 192 (565)
T ss_pred CchHHHHhhhhhhhccc----------cccccCchHHHHHHHHHHhhccccc-hhhCCHHH----HHHHHHHhcccch--
Confidence 55555555555555444 5666677777777777777777443 44444332 1356667666533
Q ss_pred ccccccchhHHhhccccceeeeccccccchhcccccccccc--------------CcccccccccceEecCCcccccccc
Q 046857 165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADK--------------EHIGPLFPRLFSLTLIDLPKLKRFC 230 (439)
Q Consensus 165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~l~~~~ 230 (439)
+.-..+|.. ++++.+|+-|.+..+ ++..+|.+.+...+. +...++ +++.+|+++.. +++++|
T Consensus 193 N~L~tlP~~-lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L-~~l~vLDLRdN-klke~P 268 (565)
T KOG0472|consen 193 NLLETLPPE-LGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHL-NSLLVLDLRDN-KLKEVP 268 (565)
T ss_pred hhhhcCChh-hcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhccc-ccceeeecccc-ccccCc
Confidence 333335655 666666666666643 444444433322110 011233 77778888775 567766
Q ss_pred cCCCcccCCCCccEEeEecCCCcceeccc
Q 046857 231 NFTGNIIEMPMLWSLTIENCPDMETFISN 259 (439)
Q Consensus 231 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 259 (439)
.... .+++|.+|++++ +.++.+++.
T Consensus 269 de~c---lLrsL~rLDlSN-N~is~Lp~s 293 (565)
T KOG0472|consen 269 DEIC---LLRSLERLDLSN-NDISSLPYS 293 (565)
T ss_pred hHHH---HhhhhhhhcccC-CccccCCcc
Confidence 6554 567777888777 455555433
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.40 E-value=7.6e-15 Score=134.40 Aligned_cols=313 Identities=15% Similarity=0.138 Sum_probs=172.1
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCccc--cccCCcCccCccceeecCce-eeecCcCchhhhhhh
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT--FSQGIVSTPKLHEVQEEGEL-CRWEGNLNSTIQKCY 118 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~l~ 118 (439)
..|+.|.+++|.....-+.......+|++++|.+.+|.+++. +-.--..+++|+++++..|. |+ +..++.+-
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT-----~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT-----DVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH-----HHHHHHHH
Confidence 356777777765444333333345677777777777776652 11112336777777766532 11 11122222
Q ss_pred hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccc
Q 046857 119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHL 198 (439)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 198 (439)
.++++|++|+++||+.++.- +...-...+.+++.+..++|..........+.+.+.-+.++++..|+.+++...+
T Consensus 213 ---~gC~kL~~lNlSwc~qi~~~--gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 213 ---EGCRKLKYLNLSWCPQISGN--GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred ---HhhhhHHHhhhccCchhhcC--cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 26788888888888876641 1100112455577777777765553222222334455666676677666543211
Q ss_pred cccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC---CccC
Q 046857 199 EELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP---QKLT 275 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L---~~~~ 275 (439)
.... ....|+.|..++|.++....... ...++++|+.+-+..|..+++.-...+..+++.|+++ .|..
T Consensus 288 ~i~~--------~c~~lq~l~~s~~t~~~d~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 288 LIAC--------GCHALQVLCYSSCTDITDEVLWA-LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred HHhh--------hhhHhhhhcccCCCCCchHHHHH-HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 1111 12678888888887776654444 3457788888888888877776555555666777766 3322
Q ss_pred cceeeeeccccccccccccccCccceEeecCCCCceeccccCCc-cccccCCcceEEeecCCCccc-ccCCCccCCCcce
Q 046857 276 LEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDE-SNKVFANLERLEISECSKLQK-LVPPSWHLENLWG 353 (439)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~ 353 (439)
..+. .........|.|+.+.++.|..+++..+..+. .......|+.+.+.+||.+++ ....+.++++|+.
T Consensus 359 ~~d~--------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 359 ITDG--------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred ehhh--------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 2220 00011234567777777766655544222111 111345667777777776653 2344456777777
Q ss_pred EEEccCCCcccccChhHHhhccccceEE
Q 046857 354 LQVSKCHGLINVLTLSASKNLVNLGRMK 381 (439)
Q Consensus 354 L~l~~c~~l~~l~p~~~~~~l~~L~~L~ 381 (439)
+++.+|..++.-....+..++|++++..
T Consensus 431 i~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred eeeechhhhhhhhhHHHHhhCccceehh
Confidence 7777776666543333445555555443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=9.5e-14 Score=126.62 Aligned_cols=347 Identities=20% Similarity=0.167 Sum_probs=198.5
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS 85 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 85 (439)
++.+.+|..|++.+++. ..+++. .+.++.|+.|+... .-+..++ +.++.+.+|+.|+++. .++..+|
T Consensus 156 ~~~~~~l~~l~~~~n~l-~~l~~~--------~i~m~~L~~ld~~~-N~L~tlP--~~lg~l~~L~~LyL~~-Nki~~lP 222 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKL-KALPEN--------HIAMKRLKHLDCNS-NLLETLP--PELGGLESLELLYLRR-NKIRFLP 222 (565)
T ss_pred HHHHHHHHHhhccccch-hhCCHH--------HHHHHHHHhcccch-hhhhcCC--hhhcchhhhHHHHhhh-cccccCC
Confidence 55677788888888763 333332 12467777777655 2223333 3367778888888887 4667777
Q ss_pred cCCcCccCccceeecCceeeecCcCchhhhhhhhhhc-CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
+|+.+..|+++++.. +.+.-+|..+. .++++..|++.++ +++++|.+. ..+.+|.+|++++.
T Consensus 223 -ef~gcs~L~Elh~g~----------N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~----clLrsL~rLDlSNN- 285 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGE----------NQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI----CLLRSLERLDLSNN- 285 (565)
T ss_pred -CCCccHHHHHHHhcc----------cHHHhhHHHHhcccccceeeecccc-ccccCchHH----HHhhhhhhhcccCC-
Confidence 677788888888777 56666777665 6778888888754 477766654 34667888888774
Q ss_pred ccccccchhHHhhccccceeeeccccccchhcc--c-c----------------cccc---ccC-----------ccccc
Q 046857 165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH--L-E----------------ELNA---DKE-----------HIGPL 211 (439)
Q Consensus 165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~-~----------------~~~~---~~~-----------~~~~~ 211 (439)
.++. .|.. ++++ +|+.|.+.+++- ..+.. + + |... ... .+...
T Consensus 286 ~is~-Lp~s-Lgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 286 DISS-LPYS-LGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred cccc-CCcc-cccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 4554 4544 6777 777777776532 11100 0 0 0000 000 00000
Q ss_pred ccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC------CccCcceeeeeccc
Q 046857 212 FPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP------QKLTLEEYFLLAHQ 285 (439)
Q Consensus 212 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L------~~~~l~~~~~~~~~ 285 (439)
.+.+.|++++- .++.+|..+.....-.-...++++. +.+..+| ..+..++++ +.+.+.. ++
T Consensus 362 -i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elP-----k~L~~lkelvT~l~lsnn~isf-v~---- 428 (565)
T KOG0472|consen 362 -ITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELP-----KRLVELKELVTDLVLSNNKISF-VP---- 428 (565)
T ss_pred -hhhhhhccccc-ccccCCHHHHHHhhhcceEEEeccc-chHhhhh-----hhhHHHHHHHHHHHhhcCcccc-ch----
Confidence 22333333321 1222221111000000122222222 1222221 112222222 2222222 11
Q ss_pred cccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccc
Q 046857 286 VQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINV 365 (439)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 365 (439)
.....+++|..|++++. -+.+++.+.. .+..|+.|+++.+ .+..+|...+-...++.+-.++ ++++.+
T Consensus 429 -----~~l~~l~kLt~L~L~NN-~Ln~LP~e~~----~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~v 496 (565)
T KOG0472|consen 429 -----LELSQLQKLTFLDLSNN-LLNDLPEEMG----SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSV 496 (565)
T ss_pred -----HHHHhhhcceeeecccc-hhhhcchhhh----hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-cccccc
Confidence 13456778888888874 4666666533 4556888888876 6667776666565665555554 678887
Q ss_pred cChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCcc
Q 046857 366 LTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLT 421 (439)
Q Consensus 366 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~ 421 (439)
+.+.++.+.+|.+||+.+. .+..++. .++++.+|++|.+++.|--.
T Consensus 497 -d~~~l~nm~nL~tLDL~nN-dlq~IPp--------~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 497 -DPSGLKNMRNLTTLDLQNN-DLQQIPP--------ILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred -ChHHhhhhhhcceeccCCC-chhhCCh--------hhccccceeEEEecCCccCC
Confidence 6667788999999999876 7777775 78899999999999987553
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=3.4e-11 Score=123.40 Aligned_cols=254 Identities=17% Similarity=0.115 Sum_probs=152.3
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 121 (439)
.+-..|+++++ ++..+|.. + .++|+.|++.++ +++.+|.. .++|++|++++|. ++.+|.
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~--l--~~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~----------LtsLP~-- 259 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDC--L--PAHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQ----------LTSLPV-- 259 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcc--h--hcCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCc----------cCcccC--
Confidence 34456666663 44444322 1 246788888773 56667643 5678888887733 333332
Q ss_pred cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL 201 (439)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 201 (439)
..++|+.|++.++. +..++. ...+|+.|++.++ +++. +|.. +++|+.|+++++ .+..++.
T Consensus 260 -lp~sL~~L~Ls~N~-L~~Lp~-------lp~~L~~L~Ls~N-~Lt~-LP~~----p~~L~~LdLS~N-~L~~Lp~---- 319 (788)
T PRK15387 260 -LPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTS-LPVL----PPGLQELSVSDN-QLASLPA---- 319 (788)
T ss_pred -cccccceeeccCCc-hhhhhh-------chhhcCEEECcCC-cccc-cccc----ccccceeECCCC-ccccCCC----
Confidence 24567778777554 444322 2356778888775 4554 3432 467888888875 4444432
Q ss_pred ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCccee
Q 046857 202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEY 279 (439)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~ 279 (439)
.+.+|+.|++.++ .++.++. ..++|+.|++++ +.+..++.. ..+|+.| +.+.+..+
T Consensus 320 ---------lp~~L~~L~Ls~N-~L~~LP~------lp~~Lq~LdLS~-N~Ls~LP~l-----p~~L~~L~Ls~N~L~~L 377 (788)
T PRK15387 320 ---------LPSELCKLWAYNN-QLTSLPT------LPSGLQELSVSD-NQLASLPTL-----PSELYKLWAYNNRLTSL 377 (788)
T ss_pred ---------CcccccccccccC-ccccccc------cccccceEecCC-CccCCCCCC-----CcccceehhhccccccC
Confidence 2256777777765 3444432 114788888887 455555421 2455555 44555543
Q ss_pred eeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC
Q 046857 280 FLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC 359 (439)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 359 (439)
+. .+++|+.|+++++ .++.++. ..++|+.|+++++. ++.+|.. ..+|+.|++++
T Consensus 378 P~-------------l~~~L~~LdLs~N-~Lt~LP~-------l~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~- 431 (788)
T PRK15387 378 PA-------------LPSGLKELIVSGN-RLTSLPV-------LPSELKELMVSGNR-LTSLPML---PSGLLSLSVYR- 431 (788)
T ss_pred cc-------------cccccceEEecCC-cccCCCC-------cccCCCEEEccCCc-CCCCCcc---hhhhhhhhhcc-
Confidence 21 2357888888775 3544431 24578888888874 6667643 34678888887
Q ss_pred CCcccccChhHHhhccccceEEEcccc
Q 046857 360 HGLINVLTLSASKNLVNLGRMKIVDCK 386 (439)
Q Consensus 360 ~~l~~l~p~~~~~~l~~L~~L~l~~c~ 386 (439)
++++.+ |.. +..+++|+.|++++++
T Consensus 432 NqLt~L-P~s-l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 NQLTRL-PES-LIHLSSETTVNLEGNP 456 (788)
T ss_pred Cccccc-ChH-HhhccCCCeEECCCCC
Confidence 457776 765 4578889999998874
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.23 E-value=1.5e-13 Score=125.99 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=101.3
Q ss_pred CCCCccEEeEecCCCcceeccccccccccCCCCC---CccCcceeeeeccccccccccccccCccceEeecCCCCceecc
Q 046857 238 EMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP---QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLW 314 (439)
Q Consensus 238 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L---~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 314 (439)
.++-+.++++..|..+++.....+...+..|+.| +|.++.+.+. +.-...-++|+.+.+..|..+++..
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l--------~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL--------WALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH--------HHHhcCCCceEEEeccccchhhhhh
Confidence 3444555555555555555444444455666666 4444433110 0001123688888888887766654
Q ss_pred ccCCccccccCCcceEEeecCCCccc--ccCCCccCCCcceEEEccCCCcccccCh---hHHhhccccceEEEcccccch
Q 046857 315 KENDESNKVFANLERLEISECSKLQK--LVPPSWHLENLWGLQVSKCHGLINVLTL---SASKNLVNLGRMKIVDCKMME 389 (439)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~l~p~---~~~~~l~~L~~L~l~~c~~l~ 389 (439)
.... ..+.++|+.+++.+|-.+.+ +.....+++.|+++.+++|..+++.... +....+..|+.+.+++|+.++
T Consensus 338 ft~l--~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 338 FTML--GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhh--hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 4422 23678888888888766553 3344457888888888888777764111 112344678888888888776
Q ss_pred hhccccccccCCCceEeccccEEecCCCCCcc
Q 046857 390 EIIQSQVGEETEDCIVFGKLRYLELDCLPSLT 421 (439)
Q Consensus 390 ~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~ 421 (439)
+...+ ...++++|+++++..|.+.+
T Consensus 416 d~~Le-------~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 416 DATLE-------HLSICRNLERIELIDCQDVT 440 (483)
T ss_pred HHHHH-------HHhhCcccceeeeechhhhh
Confidence 66543 56677888888887776655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=1.1e-10 Score=119.74 Aligned_cols=257 Identities=19% Similarity=0.152 Sum_probs=170.2
Q ss_pred cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcC
Q 046857 11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVS 90 (439)
Q Consensus 11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 90 (439)
.-..|+++++ .+..+|..+ .++|+.|.+.+ .++..++. ..++|++|++++| +++.+|..
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l----------~~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~l--- 260 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCL----------PAHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGN-QLTSLPVL--- 260 (788)
T ss_pred CCcEEEcCCC-CCCcCCcch----------hcCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCC-ccCcccCc---
Confidence 3456788887 455676643 34889999988 44554432 3588999999985 77778753
Q ss_pred ccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccccc
Q 046857 91 TPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI 170 (439)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 170 (439)
.++|++|++++ +.+..+|. -..+|+.|+++++. ++.+|. ..++|+.|+++++ .++. +
T Consensus 261 p~sL~~L~Ls~----------N~L~~Lp~---lp~~L~~L~Ls~N~-Lt~LP~-------~p~~L~~LdLS~N-~L~~-L 317 (788)
T PRK15387 261 PPGLLELSIFS----------NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QLAS-L 317 (788)
T ss_pred ccccceeeccC----------Cchhhhhh---chhhcCEEECcCCc-cccccc-------cccccceeECCCC-cccc-C
Confidence 46888999888 33444554 23568888888664 555432 3478999999886 5554 3
Q ss_pred chhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857 171 PANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
|.. ..+|+.|.+.+| .+..++. +..+|+.|+++++ .++.++.. .++|+.|++.+
T Consensus 318 p~l----p~~L~~L~Ls~N-~L~~LP~-------------lp~~Lq~LdLS~N-~Ls~LP~l------p~~L~~L~Ls~- 371 (788)
T PRK15387 318 PAL----PSELCKLWAYNN-QLTSLPT-------------LPSGLQELSVSDN-QLASLPTL------PSELYKLWAYN- 371 (788)
T ss_pred CCC----cccccccccccC-ccccccc-------------cccccceEecCCC-ccCCCCCC------Ccccceehhhc-
Confidence 431 246778888765 4444432 2257889999885 56555432 25778887776
Q ss_pred CCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcc
Q 046857 251 PDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLE 328 (439)
Q Consensus 251 ~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~ 328 (439)
+.+..++. ...+|+.| +.+.+..++. .+++|+.|+++++ .+..++. ...+|+
T Consensus 372 N~L~~LP~-----l~~~L~~LdLs~N~Lt~LP~-------------l~s~L~~LdLS~N-~LssIP~-------l~~~L~ 425 (788)
T PRK15387 372 NRLTSLPA-----LPSGLKELIVSGNRLTSLPV-------------LPSELKELMVSGN-RLTSLPM-------LPSGLL 425 (788)
T ss_pred cccccCcc-----cccccceEEecCCcccCCCC-------------cccCCCEEEccCC-cCCCCCc-------chhhhh
Confidence 34555432 23466766 5555655321 3468999999986 3555431 234788
Q ss_pred eEEeecCCCcccccCCCccCCCcceEEEccCCCcccc
Q 046857 329 RLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINV 365 (439)
Q Consensus 329 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 365 (439)
.|+++++ .++.+|..+..+++|+.|++++++ +...
T Consensus 426 ~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~-Ls~~ 460 (788)
T PRK15387 426 SLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LSER 460 (788)
T ss_pred hhhhccC-cccccChHHhhccCCCeEECCCCC-CCch
Confidence 8999875 577899988999999999999854 6554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.15 E-value=1.3e-10 Score=119.88 Aligned_cols=244 Identities=14% Similarity=0.147 Sum_probs=130.2
Q ss_pred CCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCC
Q 046857 68 PSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQAL 147 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l 147 (439)
.+...|++.+. +++.+|..+. ++|+.|++++ +.++.+|..+. ++|+.|+++++. ++.++..
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~----------N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~--- 238 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDN----------NELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT--- 238 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecC----------CCCCcCChhhc--cCCCEEECCCCc-cccCChh---
Confidence 34566777663 5666665442 4677777766 23333444332 467777777543 5444332
Q ss_pred CcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccc
Q 046857 148 PVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLK 227 (439)
Q Consensus 148 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 227 (439)
..++|+.|++++|. +.. +|.. +. .+|+.|++++ +.+..++. . ++++|+.|+++++ .++
T Consensus 239 ---l~~~L~~L~Ls~N~-L~~-LP~~-l~--s~L~~L~Ls~-N~L~~LP~--~----------l~~sL~~L~Ls~N-~Lt 296 (754)
T PRK15370 239 ---LPDTIQEMELSINR-ITE-LPER-LP--SALQSLDLFH-NKISCLPE--N----------LPEELRYLSVYDN-SIR 296 (754)
T ss_pred ---hhccccEEECcCCc-cCc-CChh-Hh--CCCCEEECcC-CccCcccc--c----------cCCCCcEEECCCC-ccc
Confidence 23467777777753 443 4544 22 4677777774 35544432 0 1256777777765 454
Q ss_pred ccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeec
Q 046857 228 RFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS 305 (439)
Q Consensus 228 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 305 (439)
.++... .++|+.|++.++ .+..++.. ..++|+.| +.+.+..++ ...+++|+.|+++
T Consensus 297 ~LP~~l-----p~sL~~L~Ls~N-~Lt~LP~~----l~~sL~~L~Ls~N~Lt~LP------------~~l~~sL~~L~Ls 354 (754)
T PRK15370 297 TLPAHL-----PSGITHLNVQSN-SLTALPET----LPPGLKTLEAGENALTSLP------------ASLPPELQVLDVS 354 (754)
T ss_pred cCcccc-----hhhHHHHHhcCC-ccccCCcc----ccccceeccccCCccccCC------------hhhcCcccEEECC
Confidence 443221 145666666663 34433211 12345554 333333321 1123577777777
Q ss_pred CCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHH---hhccccceEEE
Q 046857 306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSAS---KNLVNLGRMKI 382 (439)
Q Consensus 306 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~---~~l~~L~~L~l 382 (439)
++ .+..++.. ..++|+.|++++| .+..+|..+. ..|+.|+++++ +++.+ |..+. ..++++..|++
T Consensus 355 ~N-~L~~LP~~------lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~L-P~sl~~~~~~~~~l~~L~L 422 (754)
T PRK15370 355 KN-QITVLPET------LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN-NLVRL-PESLPHFRGEGPQPTRIIV 422 (754)
T ss_pred CC-CCCcCChh------hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC-CcccC-chhHHHHhhcCCCccEEEe
Confidence 75 34444332 3457777777776 4556665432 35777777763 46655 54332 23466777777
Q ss_pred cccc
Q 046857 383 VDCK 386 (439)
Q Consensus 383 ~~c~ 386 (439)
.+.+
T Consensus 423 ~~Np 426 (754)
T PRK15370 423 EYNP 426 (754)
T ss_pred eCCC
Confidence 6653
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=6e-12 Score=126.13 Aligned_cols=315 Identities=19% Similarity=0.168 Sum_probs=189.2
Q ss_pred eEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccC
Q 046857 14 NLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPK 93 (439)
Q Consensus 14 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~ 93 (439)
++++++| .++.+|..... -..++.|++... .+-+.|. +.+.....|+.|++++ ..+..+|..+..+++
T Consensus 2 ~vd~s~~-~l~~ip~~i~~--------~~~~~~ln~~~N-~~l~~pl-~~~~~~v~L~~l~lsn-n~~~~fp~~it~l~~ 69 (1081)
T KOG0618|consen 2 HVDASDE-QLELIPEQILN--------NEALQILNLRRN-SLLSRPL-EFVEKRVKLKSLDLSN-NQISSFPIQITLLSH 69 (1081)
T ss_pred Ccccccc-cCcccchhhcc--------HHHHHhhhcccc-ccccCch-HHhhheeeeEEeeccc-cccccCCchhhhHHH
Confidence 3555665 36666655432 234777777772 1122221 2234455599999999 467788888888999
Q ss_pred ccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchh
Q 046857 94 LHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPAN 173 (439)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 173 (439)
|+.|.++. +.++++|.......+|+.+.|. |..+..+|.+. ..+.+|+.|+++.. ++.. +|..
T Consensus 70 L~~ln~s~----------n~i~~vp~s~~~~~~l~~lnL~-~n~l~~lP~~~----~~lknl~~LdlS~N-~f~~-~Pl~ 132 (1081)
T KOG0618|consen 70 LRQLNLSR----------NYIRSVPSSCSNMRNLQYLNLK-NNRLQSLPASI----SELKNLQYLDLSFN-HFGP-IPLV 132 (1081)
T ss_pred Hhhcccch----------hhHhhCchhhhhhhcchhheec-cchhhcCchhH----Hhhhcccccccchh-ccCC-Cchh
Confidence 99999988 7888888888888889999998 55566656554 46788888998885 3443 5665
Q ss_pred HHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCcc-EEeEecCCC
Q 046857 174 LLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLW-SLTIENCPD 252 (439)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~-~L~l~~c~~ 252 (439)
+-.+..++.+..+++..+..+.. ...+.+++........+..... +++ .+++++. .
T Consensus 133 -i~~lt~~~~~~~s~N~~~~~lg~---------------~~ik~~~l~~n~l~~~~~~~i~------~l~~~ldLr~N-~ 189 (1081)
T KOG0618|consen 133 -IEVLTAEEELAASNNEKIQRLGQ---------------TSIKKLDLRLNVLGGSFLIDIY------NLTHQLDLRYN-E 189 (1081)
T ss_pred -HHhhhHHHHHhhhcchhhhhhcc---------------ccchhhhhhhhhcccchhcchh------hhheeeecccc-h
Confidence 66677777777776533322211 2244455544433333333332 233 3666663 2
Q ss_pred cceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceE
Q 046857 253 METFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERL 330 (439)
Q Consensus 253 l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L 330 (439)
+... .+..+..|+.+ .++.+..+.. ..++++.|..+.++-. ..... ....+|+++
T Consensus 190 ~~~~----dls~~~~l~~l~c~rn~ls~l~~-------------~g~~l~~L~a~~n~l~-~~~~~-----p~p~nl~~~ 246 (1081)
T KOG0618|consen 190 MEVL----DLSNLANLEVLHCERNQLSELEI-------------SGPSLTALYADHNPLT-TLDVH-----PVPLNLQYL 246 (1081)
T ss_pred hhhh----hhhhccchhhhhhhhcccceEEe-------------cCcchheeeeccCcce-eeccc-----cccccceee
Confidence 2211 13456677777 4444544322 4567777777776543 22212 033477777
Q ss_pred EeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEecccc
Q 046857 331 EISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLR 410 (439)
Q Consensus 331 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~ 410 (439)
+++.. .++.+|..+..+.+|+.+.+.. +++..+ |..+ ....+|+.|++.+| .++.++. ....++.|+
T Consensus 247 dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~l-p~ri-~~~~~L~~l~~~~n-el~yip~--------~le~~~sL~ 313 (1081)
T KOG0618|consen 247 DISHN-NLSNLPEWIGACANLEALNANH-NRLVAL-PLRI-SRITSLVSLSAAYN-ELEYIPP--------FLEGLKSLR 313 (1081)
T ss_pred ecchh-hhhcchHHHHhcccceEecccc-hhHHhh-HHHH-hhhhhHHHHHhhhh-hhhhCCC--------cccccceee
Confidence 77663 5667777777788888887776 445554 5533 35567777777666 6665554 233355566
Q ss_pred EEecCC
Q 046857 411 YLELDC 416 (439)
Q Consensus 411 ~l~l~~ 416 (439)
+|+++.
T Consensus 314 tLdL~~ 319 (1081)
T KOG0618|consen 314 TLDLQS 319 (1081)
T ss_pred eeeehh
Confidence 666554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=7.2e-12 Score=125.57 Aligned_cols=266 Identities=18% Similarity=0.149 Sum_probs=152.1
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE 120 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 120 (439)
-++++.|..+.++-..... ...-.+|++++++. .++..+|+-++.+.+|+.+++.. +.+..+|..
T Consensus 218 g~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~----------N~l~~lp~r 282 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV----HPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH----------NRLVALPLR 282 (1081)
T ss_pred CcchheeeeccCcceeecc----ccccccceeeecch-hhhhcchHHHHhcccceEecccc----------hhHHhhHHH
Confidence 3566666666644332221 11245688888887 46777787777888888888777 556777777
Q ss_pred hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccc-cceeeeccccccchhcccc
Q 046857 121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNN-LARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~ 199 (439)
+....+|+.|....+. ++.++... +.+..|++|++... ++.. +|..++.-+.. |+.|..+ ++.+...+..+
T Consensus 283 i~~~~~L~~l~~~~ne-l~yip~~l----e~~~sL~tLdL~~N-~L~~-lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~ 354 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNE-LEYIPPFL----EGLKSLRTLDLQSN-NLPS-LPDNFLAVLNASLNTLNVS-SNKLSTLPSYE 354 (1081)
T ss_pred HhhhhhHHHHHhhhhh-hhhCCCcc----cccceeeeeeehhc-cccc-cchHHHhhhhHHHHHHhhh-hcccccccccc
Confidence 7777888888777443 66655443 45788888988774 5554 56665554443 6666666 34555554333
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcc
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLE 277 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~ 277 (439)
+- .++.|+.|.+.+..--..... ...++++|+.|.+.+ +.+..+ |.+....+..|++| +.+.++
T Consensus 355 e~---------~~~~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 355 EN---------NHAALQELYLANNHLTDSCFP---VLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred ch---------hhHHHHHHHHhcCcccccchh---hhccccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccchhh
Confidence 22 126777777776532222211 123667788888877 344444 33333455666665 666665
Q ss_pred eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccccc-CCCccCCCcceEEE
Q 046857 278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLV-PPSWHLENLWGLQV 356 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l 356 (439)
.++. ....+++|+.|.... +.+..++ ++. .+|+|+.+|++.+ .++.+. .....-++|++|++
T Consensus 421 ~Lp~----------tva~~~~L~tL~ahs-N~l~~fP--e~~---~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 421 TLPD----------TVANLGRLHTLRAHS-NQLLSFP--ELA---QLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred hhhH----------HHHhhhhhHHHhhcC-Cceeech--hhh---hcCcceEEecccc-hhhhhhhhhhCCCcccceeec
Confidence 5432 234555666665544 2344444 122 5666777776443 333221 11112267777777
Q ss_pred ccCC
Q 046857 357 SKCH 360 (439)
Q Consensus 357 ~~c~ 360 (439)
++..
T Consensus 484 SGN~ 487 (1081)
T KOG0618|consen 484 SGNT 487 (1081)
T ss_pred cCCc
Confidence 7654
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=8.5e-11 Score=122.98 Aligned_cols=182 Identities=16% Similarity=0.161 Sum_probs=117.3
Q ss_pred cccccceeecccccc-ccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857 40 AFSNLKVLILDYLPR-LTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY 118 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 118 (439)
..++|++|-+.+-.. +...+. ..+..+|.|+.|++++|..+..+|..++.+-+||+|++++ +.++.+|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~----------t~I~~LP 611 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD----------TGISHLP 611 (889)
T ss_pred CCCccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC----------CCccccc
Confidence 356899988888321 222211 1155699999999999999999999999999999999999 7888999
Q ss_pred hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc-ccccccchhHHhhccccceeeeccccccchhcc
Q 046857 119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT-NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH 197 (439)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 197 (439)
.++..++.|.+|++..+..+..++... ..+++|++|.+..-. ..+. .-...+..+++|+.+.+..+.. ..+..
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr~L~l~~s~~~~~~-~~l~el~~Le~L~~ls~~~~s~-~~~e~ 685 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLRVLRLPRSALSNDK-LLLKELENLEHLENLSITISSV-LLLED 685 (889)
T ss_pred hHHHHHHhhheeccccccccccccchh----hhcccccEEEeeccccccch-hhHHhhhcccchhhheeecchh-HhHhh
Confidence 999999999999999877666553222 358999999997653 2221 1222244555555555543322 11111
Q ss_pred ccccccccCcccccccccc----eEecCCcccccccccCCCcccCCCCccEEeEecCCCc
Q 046857 198 LEELNADKEHIGPLFPRLF----SLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDM 253 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 253 (439)
+.+ . ++|. .+.+.++ ........ ...+++|+.|.+.+|...
T Consensus 686 l~~----------~-~~L~~~~~~l~~~~~-~~~~~~~~---~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 686 LLG----------M-TRLRSLLQSLSIEGC-SKRTLISS---LGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhh----------h-HHHHHHhHhhhhccc-ccceeecc---cccccCcceEEEEcCCCc
Confidence 111 1 2332 3333232 22222222 237789999999998654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=5.1e-10 Score=115.42 Aligned_cols=224 Identities=18% Similarity=0.169 Sum_probs=114.3
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 121 (439)
++|+.|++++ .+++.++.. .+++|++|++++| .++.+|..+ .++|+.|++++|. +..+|..+
T Consensus 199 ~~L~~L~Ls~-N~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N~----------L~~LP~~l 260 (754)
T PRK15370 199 EQITTLILDN-NELKSLPEN----LQGNIKTLYANSN-QLTSIPATL--PDTIQEMELSINR----------ITELPERL 260 (754)
T ss_pred cCCcEEEecC-CCCCcCChh----hccCCCEEECCCC-ccccCChhh--hccccEEECcCCc----------cCcCChhH
Confidence 3566666666 233433221 2346666766664 455565443 2356666666632 22333332
Q ss_pred cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL 201 (439)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 201 (439)
. .+|+.|+++++ .+..++.. .+++|+.|++++| +++. +|.. + .++|+.|++++| .+..++..
T Consensus 261 ~--s~L~~L~Ls~N-~L~~LP~~------l~~sL~~L~Ls~N-~Lt~-LP~~-l--p~sL~~L~Ls~N-~Lt~LP~~--- 322 (754)
T PRK15370 261 P--SALQSLDLFHN-KISCLPEN------LPEELRYLSVYDN-SIRT-LPAH-L--PSGITHLNVQSN-SLTALPET--- 322 (754)
T ss_pred h--CCCCEEECcCC-ccCccccc------cCCCCcEEECCCC-cccc-Cccc-c--hhhHHHHHhcCC-ccccCCcc---
Confidence 2 35666666633 34443322 2345666666664 3443 3332 1 134566666653 33322210
Q ss_pred ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeee
Q 046857 202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFL 281 (439)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~ 281 (439)
.+++|+.|++.++ .+..++... +++|+.|++.++ .+..++
T Consensus 323 ---------l~~sL~~L~Ls~N-~Lt~LP~~l-----~~sL~~L~Ls~N-~L~~LP------------------------ 362 (754)
T PRK15370 323 ---------LPPGLKTLEAGEN-ALTSLPASL-----PPELQVLDVSKN-QITVLP------------------------ 362 (754)
T ss_pred ---------ccccceeccccCC-ccccCChhh-----cCcccEEECCCC-CCCcCC------------------------
Confidence 1256666666665 244343211 246666666654 232221
Q ss_pred eccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCc----cCCCcceEEEc
Q 046857 282 LAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSW----HLENLWGLQVS 357 (439)
Q Consensus 282 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~l~~L~~L~l~ 357 (439)
...+++|+.|+++++ .+..++.. ..++|+.|+++++ .+..+|..+. .++++..+++.
T Consensus 363 -----------~~lp~~L~~LdLs~N-~Lt~LP~~------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 363 -----------ETLPPTITTLDVSRN-ALTNLPEN------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred -----------hhhcCCcCEEECCCC-cCCCCCHh------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEee
Confidence 123457888888875 45555433 2346788888775 4556665433 35777888887
Q ss_pred cCC
Q 046857 358 KCH 360 (439)
Q Consensus 358 ~c~ 360 (439)
+.+
T Consensus 424 ~Np 426 (754)
T PRK15370 424 YNP 426 (754)
T ss_pred CCC
Confidence 743
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.04 E-value=1e-11 Score=100.81 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=120.1
Q ss_pred CCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc
Q 046857 4 GSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT 83 (439)
Q Consensus 4 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 83 (439)
+-+-++.+++.|.|+.++ +..+++.+. .+.+|++|++.+ ..+++++.. ++.++.|+.|++.- .++..
T Consensus 27 ~gLf~~s~ITrLtLSHNK-l~~vppnia--------~l~nlevln~~n-nqie~lp~~--issl~klr~lnvgm-nrl~~ 93 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-LTVVPPNIA--------ELKNLEVLNLSN-NQIEELPTS--ISSLPKLRILNVGM-NRLNI 93 (264)
T ss_pred ccccchhhhhhhhcccCc-eeecCCcHH--------Hhhhhhhhhccc-chhhhcChh--hhhchhhhheecch-hhhhc
Confidence 344567778899999986 666776665 367999999998 455555543 78899999999987 57888
Q ss_pred cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857 84 FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC 163 (439)
Q Consensus 84 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~ 163 (439)
+|.+++.+|.|+.|++.++.+ +-..+|..+..+..|+.|+++++. .+.+|.+. +.+++|+.|.+...
T Consensus 94 lprgfgs~p~levldltynnl--------~e~~lpgnff~m~tlralyl~dnd-fe~lp~dv----g~lt~lqil~lrdn 160 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNL--------NENSLPGNFFYMTTLRALYLGDND-FEILPPDV----GKLTNLQILSLRDN 160 (264)
T ss_pred CccccCCCchhhhhhcccccc--------ccccCCcchhHHHHHHHHHhcCCC-cccCChhh----hhhcceeEEeeccC
Confidence 999999999999999988432 223345555556778888888655 55555544 67899999999886
Q ss_pred cccccccchhHHhhccccceeeeccccccchh
Q 046857 164 TNMSSAIPANLLRCLNNLARLEVRNCDSLEEM 195 (439)
Q Consensus 164 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 195 (439)
.-++ .|.. ++.+.+|++|.|.++ .+..+
T Consensus 161 dll~--lpke-ig~lt~lrelhiqgn-rl~vl 188 (264)
T KOG0617|consen 161 DLLS--LPKE-IGDLTRLRELHIQGN-RLTVL 188 (264)
T ss_pred chhh--CcHH-HHHHHHHHHHhcccc-eeeec
Confidence 5554 6776 888999999999975 55444
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-09 Score=114.71 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=56.3
Q ss_pred ccccCceEEEccccc-cceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc
Q 046857 8 IPNSLVNLNVSYCEK-IEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ 86 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 86 (439)
.++.|+.|-+.++.. +..++..+ +..+|.|++||++++..+.++|.. ++.+-+||+|++++ ..++.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~f-------f~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~-t~I~~LP~ 612 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEF-------FRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSD-TGISHLPS 612 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHH-------HhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccC-CCccccch
Confidence 455677777777653 23222221 225778888888877777767644 67778888888877 35777788
Q ss_pred CCcCccCccceeecC
Q 046857 87 GIVSTPKLHEVQEEG 101 (439)
Q Consensus 87 ~~~~l~~L~~L~l~~ 101 (439)
+++.+.+|.+|+++.
T Consensus 613 ~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEV 627 (889)
T ss_pred HHHHHHhhheecccc
Confidence 777777888877766
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=2.4e-09 Score=101.35 Aligned_cols=119 Identities=16% Similarity=0.090 Sum_probs=54.2
Q ss_pred CCCCccEEeeccCCC----ccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee
Q 046857 66 EFPSLERVSMTRCPN----MKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI 141 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~----l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i 141 (439)
.+++|+.+++.+|.. ...++..+...++|++++++++.... .......++..+..+++|+.|+++++......
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR---IPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC---cchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 344566666666531 11234444455556666665533221 01223334444445667777777765532211
Q ss_pred cCCC-CCCcCccCCccEEEeccccccccccch---hHHhhc-cccceeeecccc
Q 046857 142 WHGQ-ALPVRFFNYLAELEVDYCTNMSSAIPA---NLLRCL-NNLARLEVRNCD 190 (439)
Q Consensus 142 ~~~~-~l~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l-~~L~~L~l~~~~ 190 (439)
+... .+. .. ++|++|++++|. +++.... ..+..+ ++|++|++++|.
T Consensus 98 ~~~~~~l~-~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 98 CGVLESLL-RS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHh-cc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 1100 011 12 447777776653 3311111 113334 666777777664
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.69 E-value=9.6e-10 Score=89.44 Aligned_cols=106 Identities=15% Similarity=0.295 Sum_probs=46.4
Q ss_pred CCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC
Q 046857 66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ 145 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 145 (439)
.+.+.+.|.+++ .++..+|..++.+.+|+.|++.+ +.+.++|.++..+++|+.|++. .+.+..+|.+.
T Consensus 31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n----------nqie~lp~~issl~klr~lnvg-mnrl~~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN----------NQIEELPTSISSLPKLRILNVG-MNRLNILPRGF 98 (264)
T ss_pred chhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc----------chhhhcChhhhhchhhhheecc-hhhhhcCcccc
Confidence 344444444544 24444455555555555554444 3444444444444444444444 22233333332
Q ss_pred CCCcCccCCccEEEeccccccccccchhHHhhccccceeeecc
Q 046857 146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRN 188 (439)
Q Consensus 146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 188 (439)
+.+|.|+.|++.+.+--....|-. +-.+..|+-|.+++
T Consensus 99 ----gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~d 136 (264)
T KOG0617|consen 99 ----GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGD 136 (264)
T ss_pred ----CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcC
Confidence 344445555544432222223333 22344555555554
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.2e-09 Score=91.32 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=117.5
Q ss_pred ccceeeccccccccccccccCccCCCCccEEeeccCCCcc-ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857 43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK-TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121 (439)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 121 (439)
.|++||++. +.++.-.....+..+..|+.|.+.+. ++. .+-..+++-.+|+.|+++.|.-... +..+-+ +
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~----n~~~ll---~ 256 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTE----NALQLL---L 256 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccch----hHHHHH---H
Confidence 577777777 22211111122445777888888774 343 3555667778888888887431111 222223 3
Q ss_pred cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc-cccccchhHHhhccccceeeeccccccchhccccc
Q 046857 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN-MSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEE 200 (439)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 200 (439)
.+++.|.+|+++||.-.++.-... + .+-.++|+.|++++|.+ +.........+.+++|.+||+++|..++.- .+..
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~-V-~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~ 333 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVA-V-AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQE 333 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHH-H-hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHH
Confidence 378999999999998665542111 1 13568899999999853 332223334678999999999999887641 1111
Q ss_pred cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCC
Q 046857 201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (439)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 251 (439)
+.. |+.|++|.++.|..+..- ........|+|.+|++.+|-
T Consensus 334 ~~k--------f~~L~~lSlsRCY~i~p~--~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 334 FFK--------FNYLQHLSLSRCYDIIPE--TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHh--------cchheeeehhhhcCCChH--HeeeeccCcceEEEEecccc
Confidence 111 489999999999876321 11122467999999999873
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.42 E-value=1.4e-07 Score=89.30 Aligned_cols=223 Identities=16% Similarity=0.116 Sum_probs=127.7
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCC---CCccEEeeccCCCcc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEF---PSLERVSMTRCPNMK 82 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~ 82 (439)
+...++|++|+++++..-. .+..... .......+++|+.|+++++.-..... ..+..+ ++|++|++++|..-.
T Consensus 47 l~~~~~l~~l~l~~~~~~~-~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 47 LRPQPSLKELCLSLNETGR-IPRGLQS-LLQGLTKGCGLQELDLSDNALGPDGC--GVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HhhCCCceEEeccccccCC-cchHHHH-HHHHHHhcCceeEEEccCCCCChhHH--HHHHHHhccCcccEEEeeCCccch
Confidence 3456789999999875331 1110000 00011136799999999954321111 112223 459999999975321
Q ss_pred ----ccccCCcCc-cCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC--cCccCCc
Q 046857 83 ----TFSQGIVST-PKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP--VRFFNYL 155 (439)
Q Consensus 83 ----~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~--~~~~~~L 155 (439)
.+...+..+ ++|+.|++++|.+... ....+...+..+++|++|+++++. +....... ++ ...+++|
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-l~~~l~~~~~L 195 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGA-----SCEALAKALRANRDLKELNLANNG-IGDAGIRA-LAEGLKANCNL 195 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCch-----HHHHHHHHHHhCCCcCEEECcCCC-CchHHHHH-HHHHHHhCCCC
Confidence 233445566 8999999999765531 223344555567899999999765 33110000 11 0134699
Q ss_pred cEEEeccccccccccch---hHHhhccccceeeeccccccch--hccccccccccCcccccccccceEecCCcccc----
Q 046857 156 AELEVDYCTNMSSAIPA---NLLRCLNNLARLEVRNCDSLEE--MLHLEELNADKEHIGPLFPRLFSLTLIDLPKL---- 226 (439)
Q Consensus 156 ~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l---- 226 (439)
+.|++++|. +++.... ..+..+++|++|++++|. +.. +..+.. ....-.++|++|++.+|.--
T Consensus 196 ~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~------~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 196 EVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALAS------ALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred CEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHH------HHhccCCCceEEEccCCCCCcHHH
Confidence 999999874 4322221 125567889999999874 332 111100 00001279999999998421
Q ss_pred cccccCCCcccCCCCccEEeEecC
Q 046857 227 KRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 227 ~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
..+.. ....+++|+.+++.++
T Consensus 268 ~~l~~---~~~~~~~L~~l~l~~N 288 (319)
T cd00116 268 KDLAE---VLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHH---HHhcCCCccEEECCCC
Confidence 11211 1235589999999985
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.3e-08 Score=91.21 Aligned_cols=214 Identities=13% Similarity=0.157 Sum_probs=120.7
Q ss_pred CccccCceEEEccccccceeccccccccccccccccccceeecccc--ccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 7 GIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYL--PRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 7 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
+++..|+...|++|. ++..+.. + ....+++++.|+++.- .+|..+. ..+..+|+|+.|+++.+ ++...
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~-~-----~~k~~~~v~~LdLS~NL~~nw~~v~--~i~eqLp~Le~LNls~N-rl~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIE-E-----YSKILPNVRDLDLSRNLFHNWFPVL--KIAEQLPSLENLNLSSN-RLSNF 187 (505)
T ss_pred hhHHhhhheeecCcc-ccccchh-h-----hhhhCCcceeecchhhhHHhHHHHH--HHHHhcccchhcccccc-cccCC
Confidence 356677888888775 4433321 1 1225889999998872 1222221 22567899999999885 34322
Q ss_pred cc--CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecc
Q 046857 85 SQ--GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDY 162 (439)
Q Consensus 85 ~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~ 162 (439)
-. .-..++.|+.|.++.|++.|.+- -.-...+++|+.|++..+..+..-. .+...+..|+.|++++
T Consensus 188 ~~s~~~~~l~~lK~L~l~~CGls~k~V--------~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 188 ISSNTTLLLSHLKQLVLNSCGLSWKDV--------QWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQELDLSN 255 (505)
T ss_pred ccccchhhhhhhheEEeccCCCCHHHH--------HHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhccccC
Confidence 11 12347788888888888776542 1223358888888888764222111 1113567788888888
Q ss_pred ccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCc
Q 046857 163 CTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPML 242 (439)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 242 (439)
.+.++. .-....+.++.|+.|.++.| .+.++... +.........|++|+.|++...+ +..+..-. .....++|
T Consensus 256 N~li~~-~~~~~~~~l~~L~~Lnls~t-gi~si~~~---d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~-~l~~l~nl 328 (505)
T KOG3207|consen 256 NNLIDF-DQGYKVGTLPGLNQLNLSST-GIASIAEP---DVESLDKTHTFPKLEYLNISENN-IRDWRSLN-HLRTLENL 328 (505)
T ss_pred Cccccc-ccccccccccchhhhhcccc-CcchhcCC---CccchhhhcccccceeeecccCc-cccccccc-hhhccchh
Confidence 765542 11233667888888888865 44433221 11112223346888888877652 33322111 22344566
Q ss_pred cEEeEec
Q 046857 243 WSLTIEN 249 (439)
Q Consensus 243 ~~L~l~~ 249 (439)
+.+.+..
T Consensus 329 k~l~~~~ 335 (505)
T KOG3207|consen 329 KHLRITL 335 (505)
T ss_pred hhhhccc
Confidence 6665544
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.6e-07 Score=87.50 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=103.8
Q ss_pred cCCCCccEEeeccCCCcccccc--CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeec
Q 046857 65 LEFPSLERVSMTRCPNMKTFSQ--GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIW 142 (439)
Q Consensus 65 ~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~ 142 (439)
.++.+|+++.+.+|+ +...+. ....+++.++|+++.+-. .....+-+-...+++|+.|+++.+. +...|
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~-------~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLF-------HNWFPVLKIAEQLPSLENLNLSSNR-LSNFI 188 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhH-------HhHHHHHHHHHhcccchhccccccc-ccCCc
Confidence 357889999999964 554442 455699999999998321 1112233334578999999998554 44333
Q ss_pred CCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccc-hhccccccccccCcccccccccceEecC
Q 046857 143 HGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLE-EMLHLEELNADKEHIGPLFPRLFSLTLI 221 (439)
Q Consensus 143 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 221 (439)
... .. ..+++|+.|.++.|+ ++...-.+.+..+++|+.|.++++..+. .....+ .+..|+.|+|+
T Consensus 189 ~s~-~~-~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~-----------i~~~L~~LdLs 254 (505)
T KOG3207|consen 189 SSN-TT-LLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK-----------ILQTLQELDLS 254 (505)
T ss_pred ccc-ch-hhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhh-----------hhhHHhhcccc
Confidence 332 22 368899999999995 4433445567788999999999875321 111111 24789999999
Q ss_pred CcccccccccCCCcccCCCCccEEeEecC
Q 046857 222 DLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
+...+ ++.... .+..+|.|..+.+..|
T Consensus 255 ~N~li-~~~~~~-~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 255 NNNLI-DFDQGY-KVGTLPGLNQLNLSST 281 (505)
T ss_pred CCccc-cccccc-ccccccchhhhhcccc
Confidence 87433 333222 2347788888888875
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.38 E-value=1.2e-08 Score=93.55 Aligned_cols=268 Identities=15% Similarity=0.148 Sum_probs=136.2
Q ss_pred CccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCC
Q 046857 69 SLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQAL 147 (439)
Q Consensus 69 ~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l 147 (439)
.-.++++.. ++++.+|.+ +..+++|+.|+++.|.++... |..+.++++|.+|-+.+++.+++++.+.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~---------p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-- 135 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIA---------PDAFKGLASLLSLVLYGNNKITDLPKGA-- 135 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcC---------hHhhhhhHhhhHHHhhcCCchhhhhhhH--
Confidence 345566666 466666654 455777777777773322211 2344566677777777666677766554
Q ss_pred CcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc-
Q 046857 148 PVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL- 226 (439)
Q Consensus 148 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l- 226 (439)
++.+..|+.|.+..+ ++.. +....+..+++|..|.+.++ .++.+.. ..+..+ ..++.+.+...+.+
T Consensus 136 -F~gL~slqrLllNan-~i~C-ir~~al~dL~~l~lLslyDn-~~q~i~~--------~tf~~l-~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 136 -FGGLSSLQRLLLNAN-HINC-IRQDALRDLPSLSLLSLYDN-KIQSICK--------GTFQGL-AAIKTLHLAQNPFIC 202 (498)
T ss_pred -hhhHHHHHHHhcChh-hhcc-hhHHHHHHhhhcchhcccch-hhhhhcc--------ccccch-hccchHhhhcCcccc
Confidence 234556666666554 4444 35555777777777777664 3332211 001112 34444444332211
Q ss_pred -------ccc----ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC------CccCcceeeeeccccccc
Q 046857 227 -------KRF----CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP------QKLTLEEYFLLAHQVQPL 289 (439)
Q Consensus 227 -------~~~----~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L------~~~~l~~~~~~~~~~~~~ 289 (439)
..+ +... ...+......+.. ..+..+....+ ...++.+ .|. +..+- .
T Consensus 203 dCnL~wla~~~a~~~iet---sgarc~~p~rl~~-~Ri~q~~a~kf---~c~~esl~s~~~~~d~-~d~~c--------P 266 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIET---SGARCVSPYRLYY-KRINQEDARKF---LCSLESLPSRLSSEDF-PDSIC--------P 266 (498)
T ss_pred ccccchhhhHHhhchhhc---ccceecchHHHHH-HHhcccchhhh---hhhHHhHHHhhccccC-cCCcC--------h
Confidence 000 0000 0111111111111 01111111111 1112222 111 11100 0
Q ss_pred cccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCCcccccCh
Q 046857 290 FDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHGLINVLTL 368 (439)
Q Consensus 290 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~p~ 368 (439)
......+++|+.+++++. .++.+...-+. ....+++|.+..+ ++..+...+ ..+..|+.|++++ ++++.+.|.
T Consensus 267 ~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe---~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~ 340 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNN-KITRIEDGAFE---GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPG 340 (498)
T ss_pred HHHHhhcccceEeccCCC-ccchhhhhhhc---chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEecc
Confidence 012456789999999884 56666544343 5668888888765 455444433 3788999999998 568887454
Q ss_pred hHHhhccccceEEEcc
Q 046857 369 SASKNLVNLGRMKIVD 384 (439)
Q Consensus 369 ~~~~~l~~L~~L~l~~ 384 (439)
.+..+.+|.+|.+..
T Consensus 341 -aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 341 -AFQTLFSLSTLNLLS 355 (498)
T ss_pred -cccccceeeeeehcc
Confidence 456777888887744
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.7e-08 Score=88.12 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=19.8
Q ss_pred ccCCcceEEeecCCCcc-cccCCCccCCCcceEEEccC
Q 046857 323 VFANLERLEISECSKLQ-KLVPPSWHLENLWGLQVSKC 359 (439)
Q Consensus 323 ~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c 359 (439)
.|+.|++|.++.|+-+. ...-.+...|+|.+|++.+|
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 45566666666665332 11122345667777777665
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=2.6e-06 Score=72.04 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=39.5
Q ss_pred ccccceeeccccccccccccccCcc-CCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTL-EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
..+++.|++.+ +.++....++ .+.+|+.|++++| .++.+ +++..+++|++|++++|. ++.+..
T Consensus 18 ~~~~~~L~L~~----n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l-~~l~~L~~L~~L~L~~N~----------I~~i~~ 81 (175)
T PF14580_consen 18 PVKLRELNLRG----NQISTIENLGATLDKLEVLDLSNN-QITKL-EGLPGLPRLKTLDLSNNR----------ISSISE 81 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S---TT----TT--EEE--SS-------------S-CH
T ss_pred ccccccccccc----cccccccchhhhhcCCCEEECCCC-CCccc-cCccChhhhhhcccCCCC----------CCcccc
Confidence 34677788877 3333323333 4677888888885 56655 356677888888887733 333322
Q ss_pred hh-cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccccc-chhHHhhccccceeeecc
Q 046857 120 EM-IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI-PANLLRCLNNLARLEVRN 188 (439)
Q Consensus 120 ~~-~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~ 188 (439)
.+ ..+++|++|+++++. +.++.. . -+...+++|+.|++.+++-..... -..++..+|+|+.||-..
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~-l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNE-L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCC-C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCc-CCChHH-h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 22 146778888887543 443221 1 111357778888887764322111 112455667777776553
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.07 E-value=1.4e-07 Score=86.84 Aligned_cols=283 Identities=16% Similarity=0.141 Sum_probs=143.1
Q ss_pred CCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccE
Q 046857 79 PNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAE 157 (439)
Q Consensus 79 ~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~ 157 (439)
..++++|..+. +.-..++++. +.++.+|.+ +..+++|++|+++++ .++.|..+. +..+++|.+
T Consensus 56 ~GL~eVP~~LP--~~tveirLdq----------N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~A---F~GL~~l~~ 119 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQ----------NQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDA---FKGLASLLS 119 (498)
T ss_pred CCcccCcccCC--CcceEEEecc----------CCcccCChhhccchhhhceeccccc-chhhcChHh---hhhhHhhhH
Confidence 45667776542 2445555555 556666655 557788888888844 366654332 134666777
Q ss_pred EEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCccc
Q 046857 158 LEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNII 237 (439)
Q Consensus 158 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 237 (439)
|.+.+.+++++ +|...+.++..|+.|.+--+ .+..+.. +. ...+ ++|..|.+... .++.++.... .
T Consensus 120 Lvlyg~NkI~~-l~k~~F~gL~slqrLllNan-~i~Cir~-~a-------l~dL-~~l~lLslyDn-~~q~i~~~tf--~ 185 (498)
T KOG4237|consen 120 LVLYGNNKITD-LPKGAFGGLSSLQRLLLNAN-HINCIRQ-DA-------LRDL-PSLSLLSLYDN-KIQSICKGTF--Q 185 (498)
T ss_pred HHhhcCCchhh-hhhhHhhhHHHHHHHhcChh-hhcchhH-HH-------HHHh-hhcchhcccch-hhhhhccccc--c
Confidence 77777667776 57777888888887776643 2222211 00 0112 55555555443 2333332111 2
Q ss_pred CCCCccEEeEecCCCcceeccccccccccCCCCC-Ccc-Ccceeeeeccccc-c---------ccccccccCccceE---
Q 046857 238 EMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP-QKL-TLEEYFLLAHQVQ-P---------LFDEKVAFPQLRKL--- 302 (439)
Q Consensus 238 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L-~~~-~l~~~~~~~~~~~-~---------~~~~~~~~~~L~~L--- 302 (439)
.+.+++.+.+...+.+.+ ++++.+... .-+ ...+ +..+. + ...+....-+++.+
T Consensus 186 ~l~~i~tlhlA~np~icd-------CnL~wla~~~a~~~iets----garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~ 254 (498)
T KOG4237|consen 186 GLAAIKTLHLAQNPFICD-------CNLPWLADDLAMNPIETS----GARCVSPYRLYYKRINQEDARKFLCSLESLPSR 254 (498)
T ss_pred chhccchHhhhcCccccc-------cccchhhhHHhhchhhcc----cceecchHHHHHHHhcccchhhhhhhHHhHHHh
Confidence 334444444333221100 111111110 000 0000 00000 0 00000000011111
Q ss_pred eecCCCCceeccccCCccccccCCcceEEeecCCCcccccC-CCccCCCcceEEEccCCCcccccChhHHhhccccceEE
Q 046857 303 RLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMK 381 (439)
Q Consensus 303 ~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~ 381 (439)
-.+.|.-...-+...+. .+|+|+.|+++++ .++.+.+ .+.....++.|.+.. +++..+ ...+++.+..|++|+
T Consensus 255 ~~~~d~~d~~cP~~cf~---~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 255 LSSEDFPDSICPAKCFK---KLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLS 328 (498)
T ss_pred hccccCcCCcChHHHHh---hcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeee
Confidence 01111101111111122 6789999999886 4555543 445888999999987 568876 666788899999999
Q ss_pred EcccccchhhccccccccCCCceEeccccEEecCC
Q 046857 382 IVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDC 416 (439)
Q Consensus 382 l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~ 416 (439)
+.+. .++.+.-. .+..+..|.++.+-.
T Consensus 329 L~~N-~it~~~~~-------aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 329 LYDN-QITTVAPG-------AFQTLFSLSTLNLLS 355 (498)
T ss_pred ecCC-eeEEEecc-------cccccceeeeeehcc
Confidence 9887 55554321 455666777777644
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.00 E-value=4.7e-06 Score=70.43 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=48.0
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
.+.++..+++|+|.+|. +..+-. .+. .+.+|++|++++ ..+..+ ..+..+++|+.|++.++ .++.+
T Consensus 14 ~~~n~~~~~~L~L~~n~-I~~Ie~-L~~-------~l~~L~~L~Ls~-N~I~~l---~~l~~L~~L~~L~L~~N-~I~~i 79 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ-ISTIEN-LGA-------TLDKLEVLDLSN-NQITKL---EGLPGLPRLKTLDLSNN-RISSI 79 (175)
T ss_dssp -----------------------S---T-------T-TT--EEE-TT-S--S-----TT----TT--EEE--SS----S-
T ss_pred ccccccccccccccccc-cccccc-hhh-------hhcCCCEEECCC-CCCccc---cCccChhhhhhcccCCC-CCCcc
Confidence 45567789999999986 444422 221 377999999999 333333 45667999999999994 77777
Q ss_pred ccCCc-CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857 85 SQGIV-STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC 163 (439)
Q Consensus 85 ~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~ 163 (439)
+..+. .+|+|++|++++|.+...+++. .+..+++|+.|++.+++-... ..-...-...+|+|+.|+-...
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~--------~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELE--------PLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCG--------GGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhH--------HHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 65443 5899999999997765444431 233589999999998873221 1100000125789999986543
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.97 E-value=7.4e-07 Score=89.35 Aligned_cols=91 Identities=21% Similarity=0.199 Sum_probs=44.3
Q ss_pred ccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccc
Q 046857 151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC 230 (439)
Q Consensus 151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 230 (439)
.+++|+.|++.+|..+++..-......+++|++|.+..|..++...-.. +....++|++|++++|..+.+..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~--------i~~~~~~L~~L~l~~c~~~~d~~ 312 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS--------IAERCPSLRELDLSGCHGLTDSG 312 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH--------HHHhcCcccEEeeecCccchHHH
Confidence 3566677777666656554433333346667777666665432211000 01112667777777666553221
Q ss_pred cCCCcccCCCCccEEeEecC
Q 046857 231 NFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 231 ~~~~~~~~~~~L~~L~l~~c 250 (439)
... ....|++++.+.+..+
T Consensus 313 l~~-~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 313 LEA-LLKNCPNLRELKLLSL 331 (482)
T ss_pred HHH-HHHhCcchhhhhhhhc
Confidence 111 1224555555554443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.89 E-value=1.2e-05 Score=55.53 Aligned_cols=58 Identities=33% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCcceEEeecCCCcccccC-CCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857 325 ANLERLEISECSKLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 325 ~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c 385 (439)
|+|++|++++| .++.++. .+..+++|++|++++ +.++.+ +...+..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 35566666655 4555553 233566666666664 345554 3233455566666666554
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=6.6e-05 Score=71.48 Aligned_cols=38 Identities=26% Similarity=0.600 Sum_probs=19.0
Q ss_pred cCCccEEEeccccccccccchhHHhhccccceeeeccccccchh
Q 046857 152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEM 195 (439)
Q Consensus 152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 195 (439)
+.++++|++++| .++. +|. + ..+|++|.+++|+.++.+
T Consensus 51 ~~~l~~L~Is~c-~L~s-LP~--L--P~sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 51 ARASGRLYIKDC-DIES-LPV--L--PNELTEITIENCNNLTTL 88 (426)
T ss_pred hcCCCEEEeCCC-CCcc-cCC--C--CCCCcEEEccCCCCcccC
Confidence 455666666655 4443 231 1 234666666655555443
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=5.3e-05 Score=72.14 Aligned_cols=138 Identities=15% Similarity=0.280 Sum_probs=87.1
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
.|+++++|++++| .++.+|. .-++|++|.+++|.++..++.. -.++|++|.+.+|..+..+|..
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----------LP~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----------LPNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----------CCCCCcEEEccCCCCcccCCch----hhhhhhheEccCcccccccccc
Confidence 4678899999999 5777763 1237999999999888766422 1368999999999877777643
Q ss_pred CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857 88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS 167 (439)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~ 167 (439)
|+.|++.++. ...++.+|. .|++|.+.++....... ++....++|+.|.+.+|..+.
T Consensus 114 ------Le~L~L~~n~-------~~~L~~LPs------sLk~L~I~~~n~~~~~~----lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 114 ------VRSLEIKGSA-------TDSIKNVPN------GLTSLSINSYNPENQAR----IDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred ------cceEEeCCCC-------CcccccCcc------hHhheeccccccccccc----cccccCCcccEEEecCCCccc
Confidence 6666665421 122344444 46677775432111111 111123679999999987654
Q ss_pred cccchhHHhhccccceeeeccc
Q 046857 168 SAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 168 ~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
.|.. +. .+|+.|.+..+
T Consensus 171 --LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 171 --LPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred --Cccc-cc--ccCcEEEeccc
Confidence 3432 22 58889988754
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.74 E-value=3.2e-06 Score=84.77 Aligned_cols=120 Identities=21% Similarity=0.311 Sum_probs=77.1
Q ss_pred CCCCccEEeeccCCCccc--cccCCcCccCccceeecCc-e-eeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee
Q 046857 66 EFPSLERVSMTRCPNMKT--FSQGIVSTPKLHEVQEEGE-L-CRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI 141 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~-~-~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i 141 (439)
.++.|+.+.+.+|..+.. +-.....+++|+.|+++++ . ....... .......+++|+.|+++++..+.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------LLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH------hhhhhhhcCCcCccchhhhhccCch
Confidence 367888888888877764 3344556778888887763 1 1111100 1112234688888888877755543
Q ss_pred cCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccc
Q 046857 142 WHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLE 193 (439)
Q Consensus 142 ~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 193 (439)
-... +. ..|++|+.|.+.+|..+++..-..+...+++|++|++++|..+.
T Consensus 260 ~l~~-l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 260 GLSA-LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred hHHH-HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 2221 22 24789999998888877765555567778889999999887763
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.73 E-value=1.7e-05 Score=70.81 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=77.6
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL 374 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l 374 (439)
..|+++.|+++.+. +..+ ++.. .+++|+.|+++++ .+..+.-.-.++.+.+.|.+.. +.++++ +....+
T Consensus 305 L~Pkir~L~lS~N~-i~~v--~nLa---~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L---SGL~KL 373 (490)
T KOG1259|consen 305 LAPKLRRLILSQNR-IRTV--QNLA---ELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETL---SGLRKL 373 (490)
T ss_pred hccceeEEeccccc-eeee--hhhh---hcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhh---hhhHhh
Confidence 45789999988753 3333 2222 7889999999885 4555544445788999999987 567777 556778
Q ss_pred cccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCc
Q 046857 375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL 420 (439)
Q Consensus 375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l 420 (439)
=+|+.||+++. .++..... ..++++|.|+.+.+.+.|--
T Consensus 374 YSLvnLDl~~N-~Ie~ldeV------~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 374 YSLVNLDLSSN-QIEELDEV------NHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhheecccccc-chhhHHHh------cccccccHHHHHhhcCCCcc
Confidence 89999999887 55554332 37889999999988887643
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.61 E-value=4.9e-06 Score=80.32 Aligned_cols=125 Identities=15% Similarity=0.198 Sum_probs=92.1
Q ss_pred cccccceeecccccccccccccc-CccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLEN-YTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY 118 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 118 (439)
.+..|..|+|+. +++...+ .+..+ -|+.|-+.+ ++++.+|.+++.++.|..|+.+. +.+..+|
T Consensus 119 ~L~~lt~l~ls~----NqlS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~----------nei~slp 182 (722)
T KOG0532|consen 119 NLEALTFLDLSS----NQLSHLPDGLCDL-PLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK----------NEIQSLP 182 (722)
T ss_pred hhhHHHHhhhcc----chhhcCChhhhcC-cceeEEEec-CccccCCcccccchhHHHhhhhh----------hhhhhch
Confidence 466777777776 4433222 13333 379999998 58899999999999999999998 7788888
Q ss_pred hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
..++++.+|+.|.+..+. +..++... ..-.|.+|+++. +++.. +|.. +..|..|++|-+.++
T Consensus 183 sql~~l~slr~l~vrRn~-l~~lp~El-----~~LpLi~lDfSc-Nkis~-iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNH-LEDLPEEL-----CSLPLIRLDFSC-NKISY-LPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred HHhhhHHHHHHHHHhhhh-hhhCCHHH-----hCCceeeeeccc-Cceee-cchh-hhhhhhheeeeeccC
Confidence 888889999999988655 44444332 244588888854 56665 6887 888999999999854
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.54 E-value=0.00026 Score=48.67 Aligned_cols=59 Identities=31% Similarity=0.384 Sum_probs=48.6
Q ss_pred CccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccC-CCccCCCcceEEEccCC
Q 046857 297 PQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVP-PSWHLENLWGLQVSKCH 360 (439)
Q Consensus 297 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 360 (439)
|+|+.|+++++ .++.++.+.+. .+++|++|+++++ .++.+++ .+.++++|++|++++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~---~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS---NLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT---TGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc---CCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 58999999986 78888777665 8899999999966 5677765 45799999999999864
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.41 E-value=0.0001 Score=71.90 Aligned_cols=172 Identities=19% Similarity=0.273 Sum_probs=102.5
Q ss_pred ccccceeeccccccccccccccCccCCC-CccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFP-SLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
++.++.|++.+ ..+.+++. ....+. +|+.|++++ ..+..+|..+..+++|+.|++++ +.+..++.
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~--~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~----------N~l~~l~~ 180 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPP--LIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF----------NDLSDLPK 180 (394)
T ss_pred ccceeEEecCC-cccccCcc--ccccchhhcccccccc-cchhhhhhhhhccccccccccCC----------chhhhhhh
Confidence 45777888777 33333321 133443 788888888 46777766778888888888888 44555555
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
.....+.|+.|+++++. +..++... .....|++|.+.+...+. .+.. +..+.++..+.+... .+..++.
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~----~~~~~L~~l~~~~N~~~~--~~~~-~~~~~~l~~l~l~~n-~~~~~~~-- 249 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEI----ELLSALEELDLSNNSIIE--LLSS-LSNLKNLSGLELSNN-KLEDLPE-- 249 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhh----hhhhhhhhhhhcCCccee--cchh-hhhcccccccccCCc-eeeeccc--
Confidence 55457788888888554 55544321 134458888887753233 2322 566667777765543 3322111
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
.+... ++++.|+++++ .+..++. . ....+++.+++.+.
T Consensus 250 -------~~~~l-~~l~~L~~s~n-~i~~i~~-~---~~~~~l~~L~~s~n 287 (394)
T COG4886 250 -------SIGNL-SNLETLDLSNN-QISSISS-L---GSLTNLRELDLSGN 287 (394)
T ss_pred -------hhccc-cccceeccccc-ccccccc-c---cccCccCEEeccCc
Confidence 11113 66888888776 3444433 2 26678888888773
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.40 E-value=1.9e-05 Score=71.92 Aligned_cols=190 Identities=18% Similarity=0.161 Sum_probs=106.1
Q ss_pred cccccceeeccccccccccccc------cCccCCCCccEEeeccCCCcccc--------------ccCCcCccCccceee
Q 046857 40 AFSNLKVLILDYLPRLTSFCLE------NYTLEFPSLERVSMTRCPNMKTF--------------SQGIVSTPKLHEVQE 99 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~------~~~~~l~~L~~L~l~~c~~l~~l--------------~~~~~~l~~L~~L~l 99 (439)
..|+|++|+|++ +-+... ..+..+.+|++|.+.||. +... ..-++.-++||.+..
T Consensus 90 ~~~~L~~ldLSD----NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 90 GCPKLQKLDLSD----NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred cCCceeEeeccc----cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 467888888888 433211 114457889999998874 3321 123455678888887
Q ss_pred cCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCC---CcCccCCccEEEecccccccccc---chh
Q 046857 100 EGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQAL---PVRFFNYLAELEVDYCTNMSSAI---PAN 173 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l---~~~~~~~L~~L~l~~~~~l~~~~---~~~ 173 (439)
..|.....+ ...+-..+...+.|+++++..+. +. +.+.++ ....|++|+.|++.++. ++... -..
T Consensus 165 ~rNrlen~g-----a~~~A~~~~~~~~leevr~~qN~-I~--~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak 235 (382)
T KOG1909|consen 165 GRNRLENGG-----ATALAEAFQSHPTLEEVRLSQNG-IR--PEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK 235 (382)
T ss_pred ecccccccc-----HHHHHHHHHhccccceEEEeccc-cc--CchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence 765443222 22233334456788888887443 21 111100 12368899999987753 22111 112
Q ss_pred HHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccc----cccCCCcccCCCCccEEeEec
Q 046857 174 LLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKR----FCNFTGNIIEMPMLWSLTIEN 249 (439)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~L~~L~l~~ 249 (439)
.++.+++|++|.++||.- +.- |.......+...+|+|++|.+.++.--.. +... ....|.|++|.+.+
T Consensus 236 aL~s~~~L~El~l~dcll-~~~----Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~---~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLL-ENE----GAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC---MAEKPDLEKLNLNG 307 (382)
T ss_pred Hhcccchheeeccccccc-ccc----cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH---HhcchhhHHhcCCc
Confidence 256678889999999842 211 00000001111248999999988753221 1111 22468899999988
Q ss_pred CC
Q 046857 250 CP 251 (439)
Q Consensus 250 c~ 251 (439)
|.
T Consensus 308 N~ 309 (382)
T KOG1909|consen 308 NR 309 (382)
T ss_pred cc
Confidence 64
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=6.1e-05 Score=77.59 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=16.2
Q ss_pred CCCCccEEeeccCCCccccccCCcCccCccceeecC
Q 046857 66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEG 101 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 101 (439)
.||+|+.|+++++ .++.+ .++++++||+.|.+.+
T Consensus 171 sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCC-CccCc-HHHhccccHHHHhccC
Confidence 3555555555553 33333 4445555555554443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.25 E-value=0.00049 Score=71.00 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=37.1
Q ss_pred hhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857 117 CYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD 190 (439)
Q Consensus 117 l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 190 (439)
+|..+..+++|+.|+++++.-...++... ..+++|+.|+++++ ++...+|.. +..+++|+.|+++++.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNS 501 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCc
Confidence 44445556666666666544222333221 34666666666664 444444544 5666667777766654
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.15 E-value=0.00085 Score=65.48 Aligned_cols=170 Identities=20% Similarity=0.252 Sum_probs=112.3
Q ss_pred ccCCCCccEEeeccCCCccccccCCcCcc-CccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeec
Q 046857 64 TLEFPSLERVSMTRCPNMKTFSQGIVSTP-KLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIW 142 (439)
Q Consensus 64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~ 142 (439)
+..++.++.|++.+ ..+..++....... +|+.|++++ +.+..++..+..+++|+.|.++++. +.+++
T Consensus 112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~----------N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~ 179 (394)
T COG4886 112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD----------NKIESLPSPLRNLPNLKNLDLSFND-LSDLP 179 (394)
T ss_pred hhcccceeEEecCC-cccccCccccccchhhcccccccc----------cchhhhhhhhhccccccccccCCch-hhhhh
Confidence 44567899999988 46778887777774 999999998 6667776677789999999999665 66654
Q ss_pred CCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCC
Q 046857 143 HGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLID 222 (439)
Q Consensus 143 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 222 (439)
... ...++|+.|++++. .+.. +|.. ......|+++.+.++..+.....+.. . .++..+.+.+
T Consensus 180 ~~~----~~~~~L~~L~ls~N-~i~~-l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~----------~-~~l~~l~l~~ 241 (394)
T COG4886 180 KLL----SNLSNLNNLDLSGN-KISD-LPPE-IELLSALEELDLSNNSIIELLSSLSN----------L-KNLSGLELSN 241 (394)
T ss_pred hhh----hhhhhhhheeccCC-cccc-Cchh-hhhhhhhhhhhhcCCcceecchhhhh----------c-ccccccccCC
Confidence 432 25788999999885 5554 4553 34556699999997643333222111 1 4555555443
Q ss_pred cccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857 223 LPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP 271 (439)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 271 (439)
. .+..+.... ..+++++.+++.++ .+..++. .....+++.|
T Consensus 242 n-~~~~~~~~~---~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L 282 (394)
T COG4886 242 N-KLEDLPESI---GNLSNLETLDLSNN-QISSISS---LGSLTNLREL 282 (394)
T ss_pred c-eeeeccchh---ccccccceeccccc-ccccccc---ccccCccCEE
Confidence 3 222222222 36778999999884 5555543 3566777777
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.14 E-value=0.0005 Score=70.90 Aligned_cols=111 Identities=13% Similarity=0.042 Sum_probs=67.7
Q ss_pred ccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhc
Q 046857 43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI 122 (439)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 122 (439)
.++.|+|+++ .+... ....+..+++|+.|++++|..-..+|..++.+++|+.|++++| .....+|..+.
T Consensus 419 ~v~~L~L~~n-~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N---------~lsg~iP~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN---------SFNGSIPESLG 487 (623)
T ss_pred EEEEEECCCC-Ccccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC---------CCCCCCchHHh
Confidence 4677777762 22211 1123667788888888886544467777888888888888873 22334566677
Q ss_pred CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857 123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS 167 (439)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~ 167 (439)
.+++|+.|+++++.....+|... . ....++..+++.++..+.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l--~-~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAAL--G-GRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCCCCEEECcCCcccccCChHH--h-hccccCceEEecCCcccc
Confidence 78888888888765333433321 0 123455677777655443
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=0.00011 Score=65.67 Aligned_cols=124 Identities=23% Similarity=0.330 Sum_probs=61.8
Q ss_pred CCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee--cCCC
Q 046857 68 PSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI--WHGQ 145 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i--~~~~ 145 (439)
..|+++++++ +.++.+.+++.-+|.++.|++++|.++..+++ ..+++|+.|+++++. +.++ |.
T Consensus 284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL-----------a~L~~L~~LDLS~N~-Ls~~~Gwh-- 348 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNL-----------AELPQLQLLDLSGNL-LAECVGWH-- 348 (490)
T ss_pred hhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhh-----------hhcccceEeecccch-hHhhhhhH--
Confidence 3466666666 34555555555566666666666554433322 125666666666443 2222 21
Q ss_pred CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCc
Q 046857 146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDL 223 (439)
Q Consensus 146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 223 (439)
..+.|++.|.+.++ .+.+ - +-++++=+|..||+.++ .++.+....++ +.+ |.|+.+.+.+.
T Consensus 349 ----~KLGNIKtL~La~N-~iE~--L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~I-------G~L-PCLE~l~L~~N 409 (490)
T KOG1259|consen 349 ----LKLGNIKTLKLAQN-KIET--L-SGLRKLYSLVNLDLSSN-QIEELDEVNHI-------GNL-PCLETLRLTGN 409 (490)
T ss_pred ----hhhcCEeeeehhhh-hHhh--h-hhhHhhhhheecccccc-chhhHHHhccc-------ccc-cHHHHHhhcCC
Confidence 23566666666553 2221 1 12455556666666653 34433332222 223 55665555554
No 48
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.83 E-value=0.00024 Score=69.03 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=109.0
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS 85 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 85 (439)
+.++..|++|+|+.+. +.-+|.... +--|++|-+++ +++..++.+ ++..+.|..|+.+.| .+..+|
T Consensus 117 i~~L~~lt~l~ls~Nq-lS~lp~~lC---------~lpLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~slp 182 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQ-LSHLPDGLC---------DLPLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQSLP 182 (722)
T ss_pred hhhhhHHHHhhhccch-hhcCChhhh---------cCcceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhhhch
Confidence 4456667777777764 333333322 33588888888 555555433 678899999999996 577889
Q ss_pred cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857 86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
.-++.+.+|+.|.+.. +....+|.++. .-.|.+|+++ |+.+..||... ..|..|++|-+.+++
T Consensus 183 sql~~l~slr~l~vrR----------n~l~~lp~El~-~LpLi~lDfS-cNkis~iPv~f----r~m~~Lq~l~LenNP- 245 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRR----------NHLEDLPEELC-SLPLIRLDFS-CNKISYLPVDF----RKMRHLQVLQLENNP- 245 (722)
T ss_pred HHhhhHHHHHHHHHhh----------hhhhhCCHHHh-CCceeeeecc-cCceeecchhh----hhhhhheeeeeccCC-
Confidence 8899999999999888 67778888887 5568899999 77788887665 679999999998754
Q ss_pred cccccchhH--Hhhccccceeeeccc
Q 046857 166 MSSAIPANL--LRCLNNLARLEVRNC 189 (439)
Q Consensus 166 l~~~~~~~~--~~~l~~L~~L~l~~~ 189 (439)
+.+ .|+.+ -+...=.++|++.-|
T Consensus 246 LqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 246 LQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCC-ChHHHHhccceeeeeeecchhc
Confidence 553 45542 223344577777777
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.72 E-value=0.0015 Score=41.32 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=17.8
Q ss_pred CccEEeeccCCCccccccCCcCccCccceeecCc
Q 046857 69 SLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGE 102 (439)
Q Consensus 69 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 102 (439)
+|++|++.++ +++.+|..++++++|+.|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 5566666663 45555555555666666666553
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.0014 Score=58.80 Aligned_cols=111 Identities=12% Similarity=0.162 Sum_probs=65.2
Q ss_pred ccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcc-cccCCCccCCCcceEEEccCCCcccccChhHHhhccc
Q 046857 298 QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQ-KLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVN 376 (439)
Q Consensus 298 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~ 376 (439)
.++.+.+..|. ...|........-||++..+.+..||.-+ +--.+...++.+-.|.+.. .++.++........+|+
T Consensus 174 ~v~tlh~~~c~--~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~ 250 (418)
T KOG2982|consen 174 EVLTLHQLPCL--EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQ 250 (418)
T ss_pred hhhhhhcCCcH--HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCch
Confidence 45555544443 23343333334478999999998887433 2223445677777778776 56777755455667788
Q ss_pred cceEEEcccccchhhccccccccCCCceEeccccEEe
Q 046857 377 LGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLE 413 (439)
Q Consensus 377 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~ 413 (439)
|..|.+.+.+-...+-..+ .....+..+++++.|+
T Consensus 251 l~dlRv~~~Pl~d~l~~~e--rr~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 251 LVDLRVSENPLSDPLRGGE--RRFLLIARLTKVQVLN 285 (418)
T ss_pred hheeeccCCcccccccCCc--ceEEEEeeccceEEec
Confidence 9999888876654442211 1112345666666554
No 51
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00022 Score=60.29 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=29.9
Q ss_pred ccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 346 WHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 346 ~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
..++.++.|.+.+|.++.++.-..+.+-.++|+.|++++|+.+++.... .+.++++|+.|.+.++|
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-------~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-------CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-------HHHHhhhhHHHHhcCch
Confidence 3444445555555555554422222223345555555555554443222 33444555555555443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.45 E-value=0.00086 Score=69.32 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=24.0
Q ss_pred cccceeeccccccc-cccccccCccCCCCccEEeeccCCCcc-ccccCCcCccCccceeecC
Q 046857 42 SNLKVLILDYLPRL-TSFCLENYTLEFPSLERVSMTRCPNMK-TFSQGIVSTPKLHEVQEEG 101 (439)
Q Consensus 42 ~~L~~L~l~~~~~l-~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~ 101 (439)
.+|++|++++...+ +.|+. .....+|+|+.|.+.+-.... .+..-..++|||+.|||++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~-kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPK-KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred HhhhhcCccccchhhccHHH-HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC
Confidence 45555555553222 12211 112335555555555521111 1112223455555555555
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.34 E-value=0.00037 Score=63.78 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=51.0
Q ss_pred ccCCccEEEeccccccccccc----hhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc
Q 046857 151 FFNYLAELEVDYCTNMSSAIP----ANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL 226 (439)
Q Consensus 151 ~~~~L~~L~l~~~~~l~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 226 (439)
+-++|+.+...++ .+.+ .+ +..++..+.|+.+.+..+..-.. +...+....... ++|++|++.....-
T Consensus 155 ~~~~Lrv~i~~rN-rlen-~ga~~~A~~~~~~~~leevr~~qN~I~~e-----G~~al~eal~~~-~~LevLdl~DNtft 226 (382)
T KOG1909|consen 155 SKPKLRVFICGRN-RLEN-GGATALAEAFQSHPTLEEVRLSQNGIRPE-----GVTALAEALEHC-PHLEVLDLRDNTFT 226 (382)
T ss_pred CCcceEEEEeecc-cccc-ccHHHHHHHHHhccccceEEEecccccCc-----hhHHHHHHHHhC-Ccceeeecccchhh
Confidence 4577888887764 3332 22 22356677888888876532110 111111122224 88999998876432
Q ss_pred c--ccccCCCcccCCCCccEEeEecCC
Q 046857 227 K--RFCNFTGNIIEMPMLWSLTIENCP 251 (439)
Q Consensus 227 ~--~~~~~~~~~~~~~~L~~L~l~~c~ 251 (439)
. ...... ....+|+|+.+++.+|.
T Consensus 227 ~egs~~Lak-aL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 227 LEGSVALAK-ALSSWPHLRELNLGDCL 252 (382)
T ss_pred hHHHHHHHH-Hhcccchheeecccccc
Confidence 1 111111 23467899999999983
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.0014 Score=58.80 Aligned_cols=212 Identities=13% Similarity=0.133 Sum_probs=108.2
Q ss_pred cccccceeeccccccccccccc-cCccCCCCccEEeeccCCCccc-cccCCcCccCccceeecCceeeecCcCchhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLE-NYTLEFPSLERVSMTRCPNMKT-FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC 117 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 117 (439)
..+.++.|++.+ ..+.+|... ....++|.|+.|+++.+ .+.. +...-..+.+|+.+-+.++.+.|.--
T Consensus 69 ~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-------- 138 (418)
T KOG2982|consen 69 SVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-------- 138 (418)
T ss_pred Hhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhh--------
Confidence 467889999988 444444322 22567999999999875 3432 21111246699999999877666331
Q ss_pred hhhhcCCCCccEEEccCCCC--ceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchh
Q 046857 118 YEEMIGFRDIQYLQLSHFPR--LKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEM 195 (439)
Q Consensus 118 ~~~~~~~~~L~~L~l~~~~~--l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 195 (439)
.+....++.+++|+++.+.. +.. .... .. ..-+.+++|+..+|....-.-.-...+-++++..+-+..|+ ++..
T Consensus 139 ~s~l~~lP~vtelHmS~N~~rq~n~-Dd~c-~e-~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~ 214 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLRQLNL-DDNC-IE-DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTE 214 (418)
T ss_pred hhhhhcchhhhhhhhccchhhhhcc-cccc-cc-ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccch
Confidence 11222456677887776531 110 0000 11 12356777777777422110011123345677777666653 2222
Q ss_pred ccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccc----cccccccCCCCC
Q 046857 196 LHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISN----SVVHVTTDNKEP 271 (439)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~----~~~~~~~~L~~L 271 (439)
-.-++.+. ||.+.-|++... ++..+..-. ...++|+|..+.+...|-...+... .+++.+++++.|
T Consensus 215 s~ek~se~--------~p~~~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 215 SSEKGSEP--------FPSLSCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred hhcccCCC--------CCcchhhhhccc-ccccHHHHH-HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 11111111 355555555443 233221111 3347788888888775543322111 234556666666
Q ss_pred CccC
Q 046857 272 QKLT 275 (439)
Q Consensus 272 ~~~~ 275 (439)
+...
T Consensus 285 NGsk 288 (418)
T KOG2982|consen 285 NGSK 288 (418)
T ss_pred cCcc
Confidence 3333
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.82 E-value=0.012 Score=37.23 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=18.8
Q ss_pred cCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC
Q 046857 92 PKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP 136 (439)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 136 (439)
++|++|++++ +.++.++..+..+++|+.|+++++.
T Consensus 1 ~~L~~L~l~~----------N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSN----------NQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETS----------SS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccC----------CCCcccCchHhCCCCCCEEEecCCC
Confidence 3566666666 3444455445556666666666543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.22 E-value=0.0011 Score=66.51 Aligned_cols=107 Identities=23% Similarity=0.208 Sum_probs=65.8
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCc-cCCCcceEEEccCCCcccccChhHH
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSW-HLENLWGLQVSKCHGLINVLTLSAS 371 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~p~~~~ 371 (439)
...+|.|++|+++++ +++.+. .+. .++.|++|+++.+ .+..+|.... .|. |+.|.+++ +.++.+ ..+
T Consensus 183 Lqll~ale~LnLshN-k~~~v~--~Lr---~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL---~gi 250 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN-KFTKVD--NLR---RLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRN-NALTTL---RGI 250 (1096)
T ss_pred HHHHHHhhhhccchh-hhhhhH--HHH---hcccccccccccc-hhccccccchhhhh-heeeeecc-cHHHhh---hhH
Confidence 345577888888874 333332 122 7888999998764 4555654333 344 88888887 567776 345
Q ss_pred hhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 372 KNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 372 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
.++.+|+.||++++ -+.+.- .-..+..+..|+.|++.+.|
T Consensus 251 e~LksL~~LDlsyN-ll~~hs------eL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYN-LLSEHS------ELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHh-hhhcch------hhhHHHHHHHHHHHhhcCCc
Confidence 67888999999875 221111 11134456667777777754
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.0098 Score=50.58 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=52.7
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSL 192 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 192 (439)
.+.+++.++.|.+.+|.++.+-..+. +.. ..++|+.|++++|.++++..-.. +..+++|+.|.+.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~-l~~-~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLER-LGG-LAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHH-hcc-cccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhh
Confidence 45567888888999998887643333 332 67899999999999999854444 788899999988876554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.45 E-value=0.049 Score=46.48 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=56.0
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc--cCCcCccCccceeecCceeeecCcCchhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS--QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC 117 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 117 (439)
.++.|++|.+.. .++..+... ....+|+|..|.+.++ .+..+. .....+|+|++|.+-++.++...++.-.
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y---- 134 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY---- 134 (233)
T ss_pred CccccceEEecC-Ccceeeccc-hhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCceeE----
Confidence 577888888887 344433221 1234678888888884 444432 3356788888888888776665555332
Q ss_pred hhhhcCCCCccEEEccCCC
Q 046857 118 YEEMIGFRDIQYLQLSHFP 136 (439)
Q Consensus 118 ~~~~~~~~~L~~L~l~~~~ 136 (439)
.+..+++|+.|++.+..
T Consensus 135 --vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 135 --VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred --EEEecCcceEeehhhhh
Confidence 13357888888888654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.17 E-value=0.075 Score=45.37 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=16.7
Q ss_pred ccCCccEEEeccccccccc-c-chhHHhhccccceeeecc
Q 046857 151 FFNYLAELEVDYCTNMSSA-I-PANLLRCLNNLARLEVRN 188 (439)
Q Consensus 151 ~~~~L~~L~l~~~~~l~~~-~-~~~~~~~l~~L~~L~l~~ 188 (439)
.||.|++|.+-+.+ ++.. - -.+++..+++|+.||.+.
T Consensus 111 ~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 45566666655432 1110 0 011234456666666553
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.12 E-value=0.053 Score=48.08 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=60.7
Q ss_pred ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857 64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH 143 (439)
Q Consensus 64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~ 143 (439)
...+..|+.+++.++. +..+ ..+..+++|++|.++.+......++.. -...+++|+.+.++++. ++.+..
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~v-------l~e~~P~l~~l~ls~Nk-i~~lst 108 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEV-------LAEKAPNLKVLNLSGNK-IKDLST 108 (260)
T ss_pred cccccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCccccccccee-------hhhhCCceeEEeecCCc-cccccc
Confidence 3356777777777763 3322 234567788888887754333333321 12235677777777543 332111
Q ss_pred CCCCCcCccCCccEEEeccccccccccc-hhHHhhccccceeeecccccc
Q 046857 144 GQALPVRFFNYLAELEVDYCTNMSSAIP-ANLLRCLNNLARLEVRNCDSL 192 (439)
Q Consensus 144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l 192 (439)
. -|...+.+|..|++.+|.-..-.-+ ..++.-+++|+.|+-.+...-
T Consensus 109 -l-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 109 -L-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred -c-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 0 1112466677777766642221111 123555667777766655443
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=0.0037 Score=55.72 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=65.5
Q ss_pred cccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc--c
Q 046857 9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS--Q 86 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~ 86 (439)
+.+.+.|+..+|. +..|.-. . .|+.|++|.|+- +++..-..+..|.+|++|+++.+ .+..+. +
T Consensus 18 l~~vkKLNcwg~~-L~DIsic-~--------kMp~lEVLsLSv----NkIssL~pl~rCtrLkElYLRkN-~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISIC-E--------KMPLLEVLSLSV----NKISSLAPLQRCTRLKELYLRKN-CIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHH-H--------hcccceeEEeec----cccccchhHHHHHHHHHHHHHhc-ccccHHHHH
Confidence 4566788888886 3332111 1 588999999988 55544466778999999999874 344332 1
Q ss_pred CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEE
Q 046857 87 GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQ 131 (439)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 131 (439)
-+..+|+|+.|.|..|...-.++- +.-..+.+ -+++|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~-nYR~~VLR---~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQ-NYRRKVLR---VLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccch-hHHHHHHH---Hcccchhcc
Confidence 245688999999988765544432 22333333 356666665
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.04 E-value=0.0027 Score=50.46 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=16.0
Q ss_pred CCCccEEeeccCCCccccccCCcCccCccceeecC
Q 046857 67 FPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEG 101 (439)
Q Consensus 67 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 101 (439)
++-++.+++.+ +.+..+|.++...+.|+.++++.
T Consensus 76 f~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 76 FPTATTLNLAN-NEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred cchhhhhhcch-hhhhhchHHHhhhHHhhhccccc
Confidence 34444444444 24444444444444455444444
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.27 E-value=0.034 Score=54.62 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=57.3
Q ss_pred ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857 64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH 143 (439)
Q Consensus 64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~ 143 (439)
...+.+|+.|++.+ .+++.+...++.+++|++|+++++.++...++. .+..|+.|++.++. +..+..
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~-----------~l~~L~~L~l~~N~-i~~~~~ 157 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS-----------TLTLLKELNLSGNL-ISDISG 157 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccchh-----------hccchhhheeccCc-chhccC
Confidence 44567777777777 355555443566777777777775544333322 24557777777554 333221
Q ss_pred CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
. ..+++|+.++++++. +..+-+.. ...+.+++.+.+.++
T Consensus 158 ~-----~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 158 L-----ESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred C-----ccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCC
Confidence 1 135666777776653 33211101 245566666666653
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.16 E-value=0.058 Score=28.28 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=14.2
Q ss_pred CccEEeeccCCCccccccCCcC
Q 046857 69 SLERVSMTRCPNMKTFSQGIVS 90 (439)
Q Consensus 69 ~L~~L~l~~c~~l~~l~~~~~~ 90 (439)
+|++|++++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4777888887 66677766443
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.80 E-value=0.06 Score=52.91 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=67.3
Q ss_pred cccccceeeccccccccccccccC-ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENY-TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY 118 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 118 (439)
.+++|+.|++.+ +.+..... +..+++|+.|++++ ..+..+ .++..++.|+.|++.+|.+....++.
T Consensus 93 ~~~~l~~l~l~~----n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~------- 159 (414)
T KOG0531|consen 93 KLKSLEALDLYD----NKIEKIENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGNLISDISGLE------- 159 (414)
T ss_pred cccceeeeeccc----cchhhcccchhhhhcchheeccc-cccccc-cchhhccchhhheeccCcchhccCCc-------
Confidence 578888888888 43333233 55688888898888 466665 34566777888888886655444332
Q ss_pred hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 119 EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
.+..|+.++++++. +..+... . ...+.+++.+.+.+..
T Consensus 160 ----~l~~L~~l~l~~n~-i~~ie~~--~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 160 ----SLKSLKLLDLSYNR-IVDIEND--E-LSELISLEELDLGGNS 197 (414)
T ss_pred ----cchhhhcccCCcch-hhhhhhh--h-hhhccchHHHhccCCc
Confidence 26778888887654 4433321 0 0357788888887753
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.67 E-value=0.039 Score=48.90 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=56.9
Q ss_pred ccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc--cCCcCccCccceeecCceeeecCcCchhhhh
Q 046857 39 IAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS--QGIVSTPKLHEVQEEGELCRWEGNLNSTIQK 116 (439)
Q Consensus 39 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 116 (439)
..+|+|+.|.+++-..-........+..+|+|++++++++ +++.+. .....+.+|..|++..|..+-..++...
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~--- 137 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK--- 137 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHH---
Confidence 3688999999998321112222233556799999999995 454321 2345678888899888877765554332
Q ss_pred hhhhhcCCCCccEEEccCCC
Q 046857 117 CYEEMIGFRDIQYLQLSHFP 136 (439)
Q Consensus 117 l~~~~~~~~~L~~L~l~~~~ 136 (439)
++. -+++|+.|+-.+..
T Consensus 138 vf~---ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 138 VFL---LLPSLKYLDGCDVD 154 (260)
T ss_pred HHH---HhhhhccccccccC
Confidence 222 25667777655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.61 E-value=0.01 Score=53.04 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCCCccEEeEecCCCcceeccc---cccccccCCCCC
Q 046857 238 EMPMLWSLTIENCPDMETFISN---SVVHVTTDNKEP 271 (439)
Q Consensus 238 ~~~~L~~L~l~~c~~l~~~~~~---~~~~~~~~L~~L 271 (439)
++|+|+.|++.+.|-....... .++..+|+|++|
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 4556666666554433322221 234455666665
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.52 E-value=0.0041 Score=62.55 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=52.6
Q ss_pred ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857 64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH 143 (439)
Q Consensus 64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~ 143 (439)
+.-++.|+.|+++++ ++.... .+-.+++|++|+|++|.++....+ ++.++. |+.|.++++. +..+..
T Consensus 183 Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l---------~~~gc~-L~~L~lrnN~-l~tL~g 249 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQL---------SMVGCK-LQLLNLRNNA-LTTLRG 249 (1096)
T ss_pred HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhcccccc---------chhhhh-heeeeecccH-HHhhhh
Confidence 344677777777774 444432 455677777777777333322211 122333 6666666433 332211
Q ss_pred CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
+ .++.+|+.|+++++ -+.+--....+..+..|+.|.+.++
T Consensus 250 ---i--e~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 250 ---I--ENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ---H--HhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCC
Confidence 1 24566666666653 1211111122444556666666654
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.54 E-value=0.97 Score=35.84 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=23.3
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeecc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTR 77 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 77 (439)
|..|++|+.+.+.. .++.+....-. .+++|+.+.+.+ .+..+... .+..+++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~-------~~~~l~~i~~~~--~~~~i~~~-~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFS-------NCTSLKSINFPN--NLTSIGDN-AFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTT-------T-TT-SEEEESS--TTSCE-TT-TTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcc-------cccccccccccc--ccccccee-eeecccccccccccc
Confidence 55666677666653 34444332211 344566666554 23333221 134455566666644
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.44 E-value=0.21 Score=24.26 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=7.6
Q ss_pred CCccEEeeccCCCcccc
Q 046857 68 PSLERVSMTRCPNMKTF 84 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~~l 84 (439)
++|+.|++++|. ++.+
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 356666666664 4444
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.29 E-value=2.9 Score=33.04 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=20.2
Q ss_pred ccCCcceEEeecCCCcccccCCCc-cCCCcceEEEccCCCcccccChhHHhhccccceEEEc
Q 046857 323 VFANLERLEISECSKLQKLVPPSW-HLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV 383 (439)
Q Consensus 323 ~~~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~ 383 (439)
.+++++++.+.+ .+..++.... .+++|+.+.+.. .++.+ +...+... +|+.+.+.
T Consensus 56 ~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i-~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 56 NCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEI-GSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEE-HTTTTTT--T--EEE-T
T ss_pred cccccccccccc--cccccccccccccccccccccCc--cccEE-chhhhcCC-CceEEEEC
Confidence 444556665533 3333333332 366666666643 24443 22223333 55555543
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.33 E-value=0.096 Score=41.92 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=41.3
Q ss_pred CCcceEEeecCCCcccccCCCc-cCCCcceEEEccCCCcccccChhHHhhccccceEEEcccc
Q 046857 325 ANLERLEISECSKLQKLVPPSW-HLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCK 386 (439)
Q Consensus 325 ~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~ 386 (439)
..|...+++++ .+..+|+.+. .++..+.|++.+ +++.++ |+. ...+|.|+.|.++..+
T Consensus 53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdv-PeE-~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDV-PEE-LAAMPALRSLNLRFNP 111 (177)
T ss_pred ceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhc-hHH-HhhhHHhhhcccccCc
Confidence 35666677664 5666666554 566888888887 578887 776 4578888888888763
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.37 E-value=0.59 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=12.0
Q ss_pred CCCcceEEEccCCCcccc
Q 046857 348 LENLWGLQVSKCHGLINV 365 (439)
Q Consensus 348 l~~L~~L~l~~c~~l~~l 365 (439)
+++|++|++++|.++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 456777777777766664
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.20 E-value=0.19 Score=45.03 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=62.0
Q ss_pred cccccceeeccccccccccccc------cCccCCCCccEEeeccCCCcccc-----c---------cCCcCccCccceee
Q 046857 40 AFSNLKVLILDYLPRLTSFCLE------NYTLEFPSLERVSMTRCPNMKTF-----S---------QGIVSTPKLHEVQE 99 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~------~~~~~l~~L~~L~l~~c~~l~~l-----~---------~~~~~l~~L~~L~l 99 (439)
.+|.|+..++++ +-+... ..+.+-..|.+|.+.|| .+..+ . .-+..-|.|+.+..
T Consensus 90 kcp~l~~v~LSD----NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 90 KCPRLQKVDLSD----NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred cCCcceeeeccc----cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 456666666666 332211 12344566777777775 33321 1 12334566666665
Q ss_pred cCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCC-CC---cCccCCccEEEeccccccccccc---h
Q 046857 100 EGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQA-LP---VRFFNYLAELEVDYCTNMSSAIP---A 172 (439)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~-l~---~~~~~~L~~L~l~~~~~l~~~~~---~ 172 (439)
..|... +......-..+..-..|+++.+..+. +. |.+.+ +. ...+++|+.|++..+. ++.... .
T Consensus 165 grNRle-----ngs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La 235 (388)
T COG5238 165 GRNRLE-----NGSKELSAALLESHENLKEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA 235 (388)
T ss_pred ccchhc-----cCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH
Confidence 443322 11111111122233467777766332 21 11100 00 0246777777776632 221111 1
Q ss_pred hHHhhccccceeeeccc
Q 046857 173 NLLRCLNNLARLEVRNC 189 (439)
Q Consensus 173 ~~~~~l~~L~~L~l~~~ 189 (439)
..+...+.|++|.+.+|
T Consensus 236 ~al~~W~~lrEL~lnDC 252 (388)
T COG5238 236 DALCEWNLLRELRLNDC 252 (388)
T ss_pred HHhcccchhhhccccch
Confidence 12344566788888777
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.70 E-value=1.3 Score=39.81 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=70.8
Q ss_pred cccCceEEEccccccceeccccccccccccccccccceeeccccc--cccc-cc-----cccCccCCCCccEEeeccCCC
Q 046857 9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLP--RLTS-FC-----LENYTLEFPSLERVSMTRCPN 80 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~-----~~~~~~~l~~L~~L~l~~c~~ 80 (439)
+..++.++|++|..-++......+ .+..-.+|+..++++.- +.++ ++ ..+.+-+||+|+..+++++..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~----~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCN----VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHH----HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 556788999988743332222211 12235688888887741 1111 11 113356799999999999653
Q ss_pred ccccc----cCCcCccCccceeecCceeeecCcC--chhhhhh--hhhhcCCCCccEEEccCC
Q 046857 81 MKTFS----QGIVSTPKLHEVQEEGELCRWEGNL--NSTIQKC--YEEMIGFRDIQYLQLSHF 135 (439)
Q Consensus 81 l~~l~----~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~l--~~~~~~~~~L~~L~l~~~ 135 (439)
=...| .-+++.+.|++|.+++|+..-.++- ......+ -+....-+.|+.+....+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 33333 4477899999999999776543322 1112111 122334577887776543
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.36 E-value=6.4 Score=20.72 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=7.1
Q ss_pred cccCceEEEcccc
Q 046857 9 PNSLVNLNVSYCE 21 (439)
Q Consensus 9 ~~~L~~L~l~~c~ 21 (439)
+++|++|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 4567777777776
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=57.13 E-value=7.2 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.567 Sum_probs=11.0
Q ss_pred CCccEEeeccCCCccccccC
Q 046857 68 PSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~~l~~~ 87 (439)
++|+.|++.++ .++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666666664 55555543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=57.13 E-value=7.2 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.567 Sum_probs=11.0
Q ss_pred CCccEEeeccCCCccccccC
Q 046857 68 PSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~~l~~~ 87 (439)
++|+.|++.++ .++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45666666664 55555543
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=34.12 E-value=25 Score=19.25 Aligned_cols=18 Identities=17% Similarity=0.536 Sum_probs=11.4
Q ss_pred CCccEEeeccCCCcccccc
Q 046857 68 PSLERVSMTRCPNMKTFSQ 86 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~~l~~ 86 (439)
++|++|+++++ ++..+|+
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 45677777773 5666664
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=28.99 E-value=39 Score=18.46 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=3.9
Q ss_pred CccceeecC
Q 046857 93 KLHEVQEEG 101 (439)
Q Consensus 93 ~L~~L~l~~ 101 (439)
+|+.|+++.
T Consensus 3 ~L~~L~L~~ 11 (26)
T smart00365 3 NLEELDLSQ 11 (26)
T ss_pred ccCEEECCC
Confidence 344444444
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.50 E-value=53 Score=33.05 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=17.4
Q ss_pred cccccceeecccccccccccccc-CccCCCCccEEeeccC
Q 046857 40 AFSNLKVLILDYLPRLTSFCLEN-YTLEFPSLERVSMTRC 78 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~L~~L~l~~c 78 (439)
++|.+..++|++ .++.+++... .....|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccc
Confidence 355666666655 2222221111 1223566666666664
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=21.45 E-value=51 Score=18.11 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=7.5
Q ss_pred ccCceEEEcccc
Q 046857 10 NSLVNLNVSYCE 21 (439)
Q Consensus 10 ~~L~~L~l~~c~ 21 (439)
++|++|+|++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 456666666665
Done!