Query 046857
Match_columns 439
No_of_seqs 155 out of 2313
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 7.6E-24 2.6E-28 222.4 19.0 365 8-423 267-720 (768)
2 3rgz_A Protein brassinosteroid 99.9 1.3E-23 4.3E-28 220.7 19.0 359 6-419 174-550 (768)
3 4eco_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 212.8 20.5 343 37-420 201-600 (636)
4 3v47_A TOLL-like receptor 5B a 99.9 9.7E-23 3.3E-27 201.3 21.4 360 9-417 29-405 (455)
5 4eco_A Uncharacterized protein 99.9 5.9E-23 2E-27 210.9 19.6 364 5-421 201-633 (636)
6 3t6q_A CD180 antigen; protein- 99.9 8.1E-22 2.8E-26 201.8 26.5 88 5-103 52-140 (606)
7 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-22 3.7E-27 208.3 19.7 115 294-423 421-536 (606)
8 4ecn_A Leucine-rich repeat pro 99.9 9.9E-23 3.4E-27 213.6 19.7 359 5-420 443-840 (876)
9 3t6q_A CD180 antigen; protein- 99.9 1.7E-22 6E-27 206.8 20.5 113 294-418 446-558 (606)
10 1o6v_A Internalin A; bacterial 99.9 4.5E-22 1.5E-26 197.1 22.0 323 3-417 61-385 (466)
11 4ecn_A Leucine-rich repeat pro 99.9 2.3E-22 7.7E-27 210.9 19.5 343 37-423 443-821 (876)
12 4fmz_A Internalin; leucine ric 99.9 9.9E-22 3.4E-26 187.0 21.1 106 293-418 239-344 (347)
13 3vq2_A TLR4, TOLL-like recepto 99.9 4.9E-22 1.7E-26 203.4 20.3 355 5-418 75-556 (606)
14 2z63_A TOLL-like receptor 4, v 99.9 1.5E-21 5.1E-26 198.3 22.3 226 151-418 280-529 (570)
15 2z63_A TOLL-like receptor 4, v 99.9 1.6E-21 5.6E-26 198.0 22.5 109 295-417 394-504 (570)
16 2z81_A CD282 antigen, TOLL-lik 99.9 9.5E-22 3.2E-26 198.9 19.1 78 325-418 431-508 (549)
17 1o6v_A Internalin A; bacterial 99.9 9.7E-21 3.3E-25 187.5 21.3 319 8-418 44-364 (466)
18 3o6n_A APL1; leucine-rich repe 99.9 2.3E-20 8E-25 180.4 23.0 107 293-418 244-350 (390)
19 2id5_A Lingo-1, leucine rich r 99.9 1.8E-20 6.2E-25 186.2 22.3 88 293-386 244-331 (477)
20 1ziw_A TOLL-like receptor 3; i 99.9 2.9E-20 9.9E-25 192.9 23.1 229 153-417 381-619 (680)
21 4fmz_A Internalin; leucine ric 99.9 2.1E-20 7.2E-25 177.8 20.1 303 5-385 39-343 (347)
22 3v47_A TOLL-like receptor 5B a 99.9 6.3E-20 2.2E-24 181.1 22.7 335 5-386 49-406 (455)
23 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-20 6.6E-25 194.2 19.8 152 10-189 25-181 (680)
24 2id5_A Lingo-1, leucine rich r 99.8 1.1E-19 3.6E-24 180.6 24.0 296 9-360 31-331 (477)
25 3bz5_A Internalin-J, INLJ; leu 99.8 1.1E-20 3.8E-25 186.1 16.4 293 5-385 37-349 (457)
26 2z7x_B TOLL-like receptor 1, v 99.8 3.4E-20 1.2E-24 186.2 20.1 156 237-418 321-479 (520)
27 2z81_A CD282 antigen, TOLL-lik 99.8 3.3E-20 1.1E-24 187.6 19.2 157 9-190 25-183 (549)
28 3oja_B Anopheles plasmodium-re 99.8 1.3E-19 4.6E-24 184.8 22.5 107 293-418 250-356 (597)
29 3j0a_A TOLL-like receptor 5; m 99.8 5.8E-19 2E-23 187.2 26.8 161 8-191 22-186 (844)
30 3j0a_A TOLL-like receptor 5; m 99.8 4.8E-19 1.6E-23 187.8 25.1 290 4-335 42-372 (844)
31 2z7x_B TOLL-like receptor 1, v 99.8 9.2E-20 3.1E-24 183.1 17.6 108 293-417 344-454 (520)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.8E-19 9.7E-24 181.2 19.9 108 294-418 400-508 (562)
33 2p1m_B Transport inhibitor res 99.8 1.1E-21 3.7E-26 200.3 0.8 172 7-188 63-244 (594)
34 3bz5_A Internalin-J, INLJ; leu 99.8 4.4E-19 1.5E-23 174.7 17.4 298 40-417 40-349 (457)
35 3ogk_B Coronatine-insensitive 99.8 2.4E-21 8E-26 197.8 1.0 37 151-190 268-304 (592)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.3E-19 3.2E-23 177.4 18.6 151 213-386 353-508 (562)
37 3o6n_A APL1; leucine-rich repe 99.8 2.2E-18 7.4E-23 166.6 19.8 285 40-418 43-329 (390)
38 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-17 4.3E-22 171.3 24.2 110 293-416 465-576 (635)
39 2ft3_A Biglycan; proteoglycan, 99.8 7E-18 2.4E-22 159.4 18.5 290 43-418 34-331 (332)
40 1jl5_A Outer protein YOPM; leu 99.8 5.5E-18 1.9E-22 166.7 17.4 339 5-418 29-407 (454)
41 3oja_B Anopheles plasmodium-re 99.8 1E-17 3.5E-22 170.9 19.8 285 40-418 49-335 (597)
42 1xku_A Decorin; proteoglycan, 99.8 5.2E-17 1.8E-21 153.2 22.9 292 43-417 32-329 (330)
43 1xku_A Decorin; proteoglycan, 99.7 1.5E-16 5.1E-21 150.1 21.9 289 10-385 31-329 (330)
44 2ft3_A Biglycan; proteoglycan, 99.7 1E-16 3.6E-21 151.3 20.1 286 10-386 33-331 (332)
45 4fcg_A Uncharacterized protein 99.7 2.5E-17 8.6E-22 155.1 15.5 88 41-142 80-167 (328)
46 4fcg_A Uncharacterized protein 99.7 3E-17 1E-21 154.6 16.0 83 295-383 227-309 (328)
47 3ogk_B Coronatine-insensitive 99.7 3.1E-19 1.1E-23 182.1 2.3 342 11-391 139-528 (592)
48 4g8a_A TOLL-like receptor 4; l 99.7 1.5E-16 5.2E-21 163.3 20.7 108 296-417 444-552 (635)
49 2p1m_B Transport inhibitor res 99.7 2.9E-19 9.8E-24 182.4 0.3 339 8-387 128-518 (594)
50 1jl5_A Outer protein YOPM; leu 99.7 5.6E-17 1.9E-21 159.5 16.3 143 7-189 8-163 (454)
51 1ogq_A PGIP-2, polygalacturona 99.7 1.4E-16 4.9E-21 149.0 13.7 65 295-364 242-306 (313)
52 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-18 4E-23 172.3 -1.7 141 40-190 26-181 (461)
53 1ogq_A PGIP-2, polygalacturona 99.7 1E-16 3.5E-21 150.0 11.1 107 68-189 50-159 (313)
54 2z80_A TOLL-like receptor 2, v 99.7 3E-16 1E-20 149.4 13.9 179 41-250 51-232 (353)
55 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-15 8E-20 152.8 19.0 255 42-387 40-296 (622)
56 3g06_A SSPH2 (leucine-rich rep 99.7 5.2E-15 1.8E-19 150.2 21.1 261 10-368 40-302 (622)
57 3zyi_A Leucine-rich repeat-con 99.7 4.6E-15 1.6E-19 146.1 19.8 40 152-193 146-185 (452)
58 3zyj_A Leucine-rich repeat-con 99.6 7.3E-15 2.5E-19 144.1 20.0 37 295-335 253-289 (440)
59 3zyj_A Leucine-rich repeat-con 99.6 4.1E-15 1.4E-19 145.9 17.8 225 67-359 63-289 (440)
60 3o53_A Protein LRIM1, AGAP0063 99.6 4E-16 1.4E-20 146.3 9.0 246 66-392 32-279 (317)
61 3zyi_A Leucine-rich repeat-con 99.6 8E-15 2.8E-19 144.3 17.9 156 70-256 56-211 (452)
62 3o53_A Protein LRIM1, AGAP0063 99.6 2.2E-16 7.7E-21 148.0 6.1 246 40-365 32-278 (317)
63 2z80_A TOLL-like receptor 2, v 99.6 2.8E-15 9.7E-20 142.7 13.7 179 9-224 51-233 (353)
64 2z66_A Variable lymphocyte rec 99.6 1.7E-14 5.6E-19 134.5 17.5 229 68-360 28-259 (306)
65 2z66_A Variable lymphocyte rec 99.6 8.3E-15 2.9E-19 136.5 13.5 237 113-417 18-258 (306)
66 1z7x_W Ribonuclease inhibitor; 99.6 4.8E-17 1.6E-21 160.7 -3.5 349 6-390 24-412 (461)
67 2xwt_C Thyrotropin receptor; s 99.5 5.6E-14 1.9E-18 126.0 13.5 57 325-386 179-237 (239)
68 1ozn_A Reticulon 4 receptor; N 99.5 2.7E-13 9.4E-18 124.8 17.9 84 296-385 152-235 (285)
69 2ast_B S-phase kinase-associat 99.5 4.9E-15 1.7E-19 139.9 5.8 87 295-391 220-308 (336)
70 4ay9_X Follicle-stimulating ho 99.5 1.4E-13 4.7E-18 130.8 15.7 224 67-357 29-254 (350)
71 3oja_A Leucine-rich immune mol 99.5 2.2E-13 7.5E-18 135.1 17.7 83 295-387 167-249 (487)
72 3oja_A Leucine-rich immune mol 99.5 1E-13 3.5E-18 137.5 14.1 216 40-309 32-249 (487)
73 1ozn_A Reticulon 4 receptor; N 99.5 2.1E-13 7.3E-18 125.6 14.4 197 42-271 32-230 (285)
74 2ast_B S-phase kinase-associat 99.5 2E-14 6.7E-19 135.8 7.1 111 65-189 90-205 (336)
75 2xwt_C Thyrotropin receptor; s 99.5 2E-13 6.7E-18 122.4 13.2 204 153-420 31-239 (239)
76 4ay9_X Follicle-stimulating ho 99.5 4.8E-13 1.7E-17 127.0 14.7 243 71-384 12-255 (350)
77 1p9a_G Platelet glycoprotein I 99.5 5.3E-13 1.8E-17 123.2 13.8 202 5-251 5-206 (290)
78 1wwl_A Monocyte differentiatio 99.4 3.6E-14 1.2E-18 132.6 5.0 89 66-163 93-183 (312)
79 1h6u_A Internalin H; cell adhe 99.4 8.4E-13 2.9E-17 123.0 12.7 189 8-250 39-227 (308)
80 1wwl_A Monocyte differentiatio 99.4 6.1E-13 2.1E-17 124.2 10.0 203 41-277 94-309 (312)
81 1h6u_A Internalin H; cell adhe 99.4 2.6E-12 8.8E-17 119.7 12.4 174 2-224 55-228 (308)
82 2z62_A TOLL-like receptor 4, v 99.4 6.8E-12 2.3E-16 114.9 14.9 198 10-249 28-233 (276)
83 1p9a_G Platelet glycoprotein I 99.4 8.3E-12 2.8E-16 115.1 14.9 198 123-386 8-206 (290)
84 2o6q_A Variable lymphocyte rec 99.3 2.2E-11 7.4E-16 111.1 15.4 198 11-251 17-216 (270)
85 3rfs_A Internalin B, repeat mo 99.3 3.6E-12 1.2E-16 116.5 10.1 175 41-250 40-215 (272)
86 3rfs_A Internalin B, repeat mo 99.3 5.2E-12 1.8E-16 115.4 10.7 182 6-228 37-220 (272)
87 2o6q_A Variable lymphocyte rec 99.3 4.5E-11 1.5E-15 109.0 16.3 178 153-385 37-215 (270)
88 4ezg_A Putative uncharacterize 99.3 1.4E-11 4.9E-16 106.7 12.2 126 41-188 65-190 (197)
89 4glp_A Monocyte differentiatio 99.3 5.2E-12 1.8E-16 117.7 8.3 230 10-278 64-308 (310)
90 2ca6_A RAN GTPase-activating p 99.3 2.2E-12 7.4E-17 124.2 5.7 86 294-385 213-313 (386)
91 2z62_A TOLL-like receptor 4, v 99.3 6.2E-11 2.1E-15 108.4 14.6 183 42-257 28-216 (276)
92 2ca6_A RAN GTPase-activating p 99.3 1.6E-12 5.6E-17 125.1 3.8 90 294-385 241-340 (386)
93 1h6t_A Internalin B; cell adhe 99.2 2.8E-11 9.4E-16 111.7 9.9 167 40-250 44-210 (291)
94 1h6t_A Internalin B; cell adhe 99.2 9.3E-11 3.2E-15 108.1 12.6 162 66-271 44-205 (291)
95 4ezg_A Putative uncharacterize 99.2 8.8E-11 3E-15 101.7 10.6 150 65-250 41-191 (197)
96 4glp_A Monocyte differentiatio 99.2 1.5E-10 5.2E-15 107.8 12.0 114 67-189 90-207 (310)
97 1m9s_A Internalin B; cell inva 99.2 5.1E-11 1.8E-15 120.7 9.4 56 41-102 64-119 (605)
98 1m9s_A Internalin B; cell inva 99.2 3.4E-11 1.2E-15 122.1 7.3 168 40-251 41-208 (605)
99 3m19_A Variable lymphocyte rec 99.1 3.5E-10 1.2E-14 101.9 12.4 175 10-224 14-190 (251)
100 3m19_A Variable lymphocyte rec 99.1 4.8E-10 1.6E-14 101.0 12.5 173 179-385 14-189 (251)
101 3cvr_A Invasion plasmid antige 99.1 5.8E-10 2E-14 111.8 12.1 182 11-251 60-241 (571)
102 1xeu_A Internalin C; cellular 99.1 3.1E-10 1.1E-14 102.9 8.6 165 41-250 18-182 (263)
103 1xeu_A Internalin C; cellular 99.0 3.8E-10 1.3E-14 102.4 8.5 167 8-224 17-183 (263)
104 3goz_A Leucine-rich repeat-con 99.0 1.1E-10 3.8E-15 111.2 4.4 86 297-385 196-294 (362)
105 2o6s_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 95.3 10.3 131 41-190 27-159 (208)
106 2v70_A SLIT-2, SLIT homolog 2 99.0 3.2E-09 1.1E-13 93.5 12.1 158 4-191 6-165 (220)
107 2v9t_B SLIT homolog 2 protein 98.9 5E-09 1.7E-13 92.2 11.3 130 42-190 32-163 (220)
108 3goz_A Leucine-rich repeat-con 98.9 3.6E-10 1.2E-14 107.6 3.7 70 297-368 225-302 (362)
109 2ell_A Acidic leucine-rich nuc 98.9 1.2E-09 4.2E-14 91.7 6.3 130 41-190 23-158 (168)
110 2je0_A Acidic leucine-rich nuc 98.9 1.3E-09 4.4E-14 89.7 5.6 128 41-188 16-149 (149)
111 2xot_A Amphoterin-induced prot 98.9 7.4E-09 2.5E-13 98.5 11.0 152 213-384 39-198 (361)
112 2je0_A Acidic leucine-rich nuc 98.9 4.9E-09 1.7E-13 86.1 8.4 105 67-189 16-123 (149)
113 3e6j_A Variable lymphocyte rec 98.9 8.6E-09 2.9E-13 91.3 10.3 149 12-191 21-171 (229)
114 3cvr_A Invasion plasmid antige 98.9 2.1E-08 7.3E-13 100.5 13.7 138 43-231 60-197 (571)
115 1dce_A Protein (RAB geranylger 98.8 1.1E-10 3.7E-15 117.5 -3.2 36 6-50 345-380 (567)
116 1a9n_A U2A', U2A'; complex (nu 98.8 1.5E-09 5.2E-14 92.0 4.4 63 123-190 86-151 (176)
117 3e6j_A Variable lymphocyte rec 98.8 1.4E-08 4.6E-13 90.0 10.5 147 45-224 22-170 (229)
118 2o6s_A Variable lymphocyte rec 98.8 9.2E-09 3.1E-13 89.6 9.2 153 8-195 26-181 (208)
119 2xot_A Amphoterin-induced prot 98.8 2.1E-08 7.2E-13 95.3 11.8 152 13-195 21-178 (361)
120 2ell_A Acidic leucine-rich nuc 98.8 8.3E-09 2.8E-13 86.6 7.6 134 66-224 22-158 (168)
121 2v9t_B SLIT homolog 2 protein 98.8 4.5E-08 1.6E-12 86.0 12.6 130 213-385 32-162 (220)
122 2v70_A SLIT-2, SLIT homolog 2 98.8 3.9E-08 1.3E-12 86.5 12.0 132 213-385 32-163 (220)
123 3sb4_A Hypothetical leucine ri 98.8 5.9E-08 2E-12 90.9 14.0 100 297-413 226-327 (329)
124 3sb4_A Hypothetical leucine ri 98.7 1.5E-08 5E-13 95.1 7.9 78 295-381 248-327 (329)
125 1a9n_A U2A', U2A'; complex (nu 98.7 2.1E-08 7.3E-13 84.8 7.1 37 151-189 86-123 (176)
126 1dce_A Protein (RAB geranylger 98.6 4.7E-09 1.6E-13 105.6 1.5 187 6-220 368-567 (567)
127 1w8a_A SLIT protein; signaling 98.6 1.5E-07 5.2E-12 80.8 10.3 77 13-102 11-88 (192)
128 4b8c_D Glucose-repressible alc 98.6 1.6E-08 5.5E-13 104.9 3.7 107 64-189 220-326 (727)
129 3e4g_A ATP synthase subunit S, 98.6 2.4E-08 8.1E-13 83.4 4.0 88 326-421 62-153 (176)
130 1w8a_A SLIT protein; signaling 98.5 2.8E-07 9.4E-12 79.1 9.4 126 45-191 11-138 (192)
131 1ds9_A Outer arm dynein; leuci 98.5 1.1E-09 3.8E-14 94.8 -6.1 106 65-189 45-150 (198)
132 2wfh_A SLIT homolog 2 protein 98.5 3E-07 1E-11 79.0 8.9 36 152-189 101-136 (193)
133 4fs7_A Uncharacterized protein 98.5 1.8E-05 6.2E-10 75.8 20.8 80 295-384 295-375 (394)
134 4b8c_D Glucose-repressible alc 98.4 2.1E-07 7.2E-12 96.6 5.9 114 40-173 222-335 (727)
135 2wfh_A SLIT homolog 2 protein 98.4 1.5E-06 5E-11 74.6 10.3 124 13-164 13-137 (193)
136 2o6r_A Variable lymphocyte rec 98.4 1.1E-06 3.8E-11 74.1 8.6 108 296-418 27-135 (177)
137 4fdw_A Leucine rich hypothetic 98.3 7.1E-05 2.4E-09 71.7 21.2 237 43-358 136-379 (401)
138 4fdw_A Leucine rich hypothetic 98.3 4.8E-05 1.7E-09 72.9 19.5 34 151-187 178-211 (401)
139 2o6r_A Variable lymphocyte rec 98.3 2.7E-06 9.1E-11 71.8 8.9 129 11-168 8-138 (177)
140 1ds9_A Outer arm dynein; leuci 98.3 1.8E-08 6.1E-13 87.1 -4.8 89 81-189 37-125 (198)
141 3e4g_A ATP synthase subunit S, 98.3 4.2E-07 1.4E-11 75.8 3.5 89 298-391 62-155 (176)
142 3g39_A Variable lymphocyte rec 98.2 3.3E-06 1.1E-10 70.7 8.0 37 123-163 76-112 (170)
143 4fs7_A Uncharacterized protein 98.2 8.8E-05 3E-09 71.0 19.1 78 323-414 295-373 (394)
144 3g39_A Variable lymphocyte rec 98.2 2.7E-06 9.4E-11 71.2 7.5 83 296-385 29-112 (170)
145 2r9u_A Variable lymphocyte rec 98.2 3E-06 1E-10 71.3 7.6 84 295-385 31-115 (174)
146 2r9u_A Variable lymphocyte rec 98.1 4.4E-06 1.5E-10 70.3 7.2 36 152-189 80-115 (174)
147 2ra8_A Uncharacterized protein 98.1 6.9E-06 2.4E-10 77.5 7.9 166 9-189 106-289 (362)
148 3un9_A NLR family member X1; l 98.0 1E-06 3.5E-11 83.8 0.3 168 41-224 71-250 (372)
149 2ra8_A Uncharacterized protein 98.0 3.9E-06 1.3E-10 79.2 3.8 175 6-190 135-318 (362)
150 2ifg_A High affinity nerve gro 97.8 4.4E-05 1.5E-09 71.7 7.8 9 155-163 105-113 (347)
151 2ifg_A High affinity nerve gro 97.7 6.2E-05 2.1E-09 70.7 8.1 59 41-101 30-89 (347)
152 4gt6_A Cell surface protein; l 97.6 0.014 4.8E-07 55.5 22.8 301 5-385 58-367 (394)
153 4gt6_A Cell surface protein; l 97.6 0.019 6.6E-07 54.5 22.9 296 43-416 65-366 (394)
154 3un9_A NLR family member X1; l 97.4 2.5E-05 8.7E-10 74.1 0.5 169 9-190 71-250 (372)
155 4h09_A Hypothetical leucine ri 97.1 0.05 1.7E-06 51.3 19.7 52 42-99 46-98 (379)
156 1io0_A Tropomodulin; LRR prote 96.9 0.00096 3.3E-08 56.3 5.3 114 65-189 33-161 (185)
157 4h09_A Hypothetical leucine ri 96.8 0.17 5.7E-06 47.6 20.9 79 8-101 44-122 (379)
158 1io0_A Tropomodulin; LRR prote 96.7 0.00066 2.3E-08 57.3 2.5 117 40-164 34-162 (185)
159 3rw6_A Nuclear RNA export fact 96.2 0.0017 6E-08 58.0 2.2 89 40-133 168-259 (267)
160 3rw6_A Nuclear RNA export fact 94.8 0.024 8.1E-07 50.6 4.5 86 65-160 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 77.1 1.4 4.8E-05 37.0 2.8 65 67-136 40-109 (197)
162 3rfe_A Platelet glycoprotein I 71.8 2.4 8.2E-05 32.8 2.8 32 326-358 32-64 (130)
163 3rfe_A Platelet glycoprotein I 71.3 3.3 0.00011 32.0 3.5 38 152-191 30-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 58.8 6.6 0.00023 32.8 3.2 89 41-135 40-136 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=7.6e-24 Score=222.36 Aligned_cols=365 Identities=13% Similarity=-0.003 Sum_probs=186.1
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
.+++|++|++++|...+.++..+.. .+++|++|+++++.--...+ ..+..+++|++|++++|.....+|..
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~-------~~~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSG-------ACDTLTGLDLSGNHFYGAVP--PFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCT-------TCTTCSEEECCSSEEEECCC--GGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred ccCCCCEEECcCCccCCccCHHHHh-------hcCcCCEEECcCCcCCCccc--hHHhcCCCccEEECCCCcccCcCCHH
Confidence 6788889999888766566665442 24677777777732111111 22556777777777776433356654
Q ss_pred -CcCccCccceeecCceeeecCcCchhhhh------------------hhhhhcC--CCCccEEEccCCCCceeecCCCC
Q 046857 88 -IVSTPKLHEVQEEGELCRWEGNLNSTIQK------------------CYEEMIG--FRDIQYLQLSHFPRLKEIWHGQA 146 (439)
Q Consensus 88 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------------l~~~~~~--~~~L~~L~l~~~~~l~~i~~~~~ 146 (439)
+..+++|++|++++|.+.... ...+.. ++..+.. +++|++|+++++.....++...
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l- 414 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGEL--PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL- 414 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECC--CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-
T ss_pred HHhcCCCCCEEeCcCCccCccc--cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-
Confidence 666777777777765443110 000111 1111111 3334444444333111222111
Q ss_pred CCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc
Q 046857 147 LPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL 226 (439)
Q Consensus 147 l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 226 (439)
..+++|+.|+++++ .+++.+|.. +..+++|++|++++|.....++. .+..+ ++|++|++.++.-.
T Consensus 415 ---~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~---------~~~~l-~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 415 ---SNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQ---------ELMYV-KTLETLILDFNDLT 479 (768)
T ss_dssp ---GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSCCCG---------GGGGC-TTCCEEECCSSCCC
T ss_pred ---hcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCcCCH---------HHcCC-CCceEEEecCCccc
Confidence 23444555555444 233333333 44445555555554432211111 11112 55555555555333
Q ss_pred cccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEee
Q 046857 227 KRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRL 304 (439)
Q Consensus 227 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 304 (439)
+.++... ..+++|+.|++.++. +....+.. ...+++|+.| +.+.+.+.++ .....+++|+.|++
T Consensus 480 ~~~p~~l---~~l~~L~~L~L~~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p---------~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 480 GEIPSGL---SNCTNLNWISLSNNR-LTGEIPKW-IGRLENLAILKLSNNSFSGNIP---------AELGDCRSLIWLDL 545 (768)
T ss_dssp SCCCGGG---GGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCCEEECC---------GGGGGCTTCCEEEC
T ss_pred CcCCHHH---hcCCCCCEEEccCCc-cCCcCChH-HhcCCCCCEEECCCCcccCcCC---------HHHcCCCCCCEEEC
Confidence 3333322 255566666665543 22222222 2345555555 4444443322 12344555666665
Q ss_pred cCCCCceeccccC------------------------------------------------------------------C
Q 046857 305 SGLHKVQHLWKEN------------------------------------------------------------------D 318 (439)
Q Consensus 305 ~~~~~l~~l~~~~------------------------------------------------------------------~ 318 (439)
++++-.+.++... .
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 5442211111000 0
Q ss_pred ccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccc
Q 046857 319 ESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGE 398 (439)
Q Consensus 319 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 398 (439)
...+.+++|++|+++++.....+|..++.+++|+.|+++++ +++..+|.. ++.+++|+.|+++++..-..++.
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~----- 698 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQ----- 698 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSSCCEECCCG-----
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChH-HhCCCCCCEEECCCCcccCcCCh-----
Confidence 00113467888888887666677777888888888888875 466555764 46788888888888743334443
Q ss_pred cCCCceEeccccEEecCCCCCccee
Q 046857 399 ETEDCIVFGKLRYLELDCLPSLTSF 423 (439)
Q Consensus 399 ~~~~~~~l~~L~~l~l~~c~~l~~~ 423 (439)
.+..+++|++|++++++--..+
T Consensus 699 ---~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 699 ---AMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp ---GGGGCCCCSEEECCSSEEEEEC
T ss_pred ---HHhCCCCCCEEECcCCcccccC
Confidence 5667788888888887443333
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.3e-23 Score=220.70 Aligned_cols=359 Identities=15% Similarity=0.047 Sum_probs=203.7
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS 85 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 85 (439)
++++++|++|++++|...+..+. . .+++|++|+++++. +... .+.+..+++|++|++++|..-..+|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~--~--------~l~~L~~L~Ls~n~-l~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV--S--------RCVNLEFLDVSSNN-FSTG--IPFLGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC--T--------TCTTCCEEECCSSC-CCSC--CCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred hccCCCCCEEECCCCcccccCCc--c--------cCCcCCEEECcCCc-CCCC--CcccccCCCCCEEECcCCcCCCccc
Confidence 67788999999999875443332 1 57888888888842 2211 1236678888888888875444677
Q ss_pred cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857 86 QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
..++.+++|++|++++|........ . .+++|++|+++++.....++... ...+++|++|+++++ .
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~---------~--~l~~L~~L~L~~n~l~~~ip~~~---~~~~~~L~~L~Ls~n-~ 305 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPP---------L--PLKSLQYLSLAENKFTGEIPDFL---SGACDTLTGLDLSGN-H 305 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCC---------C--CCTTCCEEECCSSEEEESCCCCS---CTTCTTCSEEECCSS-E
T ss_pred HHHhcCCCCCEEECCCCcccCccCc---------c--ccCCCCEEECcCCccCCccCHHH---HhhcCcCCEEECcCC-c
Confidence 7788888888888888654321110 0 34555555555443221222211 012344555555443 2
Q ss_pred cccccchhHHhhccccceeeeccccccchhcc--ccccc--------------cccCcccccccccceEecCCccccccc
Q 046857 166 MSSAIPANLLRCLNNLARLEVRNCDSLEEMLH--LEELN--------------ADKEHIGPLFPRLFSLTLIDLPKLKRF 229 (439)
Q Consensus 166 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~~l~~~ 229 (439)
++..+|.. ++.+++|++|++++|.....++. +.... .....+..+.++|++|+++++.-.+.+
T Consensus 306 l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 306 FYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred CCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 22223332 44444444444444422111111 00000 000011112126666666665433333
Q ss_pred ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCC
Q 046857 230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGL 307 (439)
Q Consensus 230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 307 (439)
+.... ...+++|+.|++.+| .+....+.. ...+++|+.| +.+.+.+.++ .....+++|+.|+++++
T Consensus 385 ~~~~~-~~~~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p---------~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 385 LPNLC-QNPKNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLSGTIP---------SSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp CTTTT-CSTTCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEESCCC---------GGGGGCTTCCEEECCSS
T ss_pred Chhhh-hcccCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCcccCccc---------HHHhcCCCCCEEECCCC
Confidence 33221 112567777777775 333333332 3567777777 4445544332 23456778888888876
Q ss_pred CCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccccc
Q 046857 308 HKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKM 387 (439)
Q Consensus 308 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~ 387 (439)
.-.+.++.. +. .+++|++|++++|.....+|..+..+++|++|++++|+ ++..+|.. ++.+++|+.|++++|..
T Consensus 453 ~l~~~~p~~-~~---~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 453 MLEGEIPQE-LM---YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKW-IGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCCSCCCGG-GG---GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCC
T ss_pred cccCcCCHH-Hc---CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCChH-HhcCCCCCEEECCCCcc
Confidence 433233221 22 67888889888886666777778888899999998864 65544664 56788899999988844
Q ss_pred chhhccccccccCCCceEeccccEEecCCCCC
Q 046857 388 MEEIIQSQVGEETEDCIVFGKLRYLELDCLPS 419 (439)
Q Consensus 388 l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~ 419 (439)
...++. .+..+++|++|++++|+-
T Consensus 527 ~~~~p~--------~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 527 SGNIPA--------ELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EEECCG--------GGGGCTTCCEEECCSSEE
T ss_pred cCcCCH--------HHcCCCCCCEEECCCCcc
Confidence 334443 567788899998888753
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.3e-23 Score=212.83 Aligned_cols=343 Identities=12% Similarity=0.092 Sum_probs=189.2
Q ss_pred ccccccccceeeccccccccc------------------cccccCcc--CCCCccEEeeccCCCccccccCCcCccCccc
Q 046857 37 NRIAFSNLKVLILDYLPRLTS------------------FCLENYTL--EFPSLERVSMTRCPNMKTFSQGIVSTPKLHE 96 (439)
Q Consensus 37 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 96 (439)
.+..+++|++|+++++. +.. ++ ..++ .+++|++|++++|.....+|..++++++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip--~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCc--hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 34468899999999843 444 33 3366 8999999999998777789999999999999
Q ss_pred eeecCceeeecCcCchhhh-hhhhhhcCC------CCccEEEccCCCCceeecC--CCCCCcCccCCccEEEeccccccc
Q 046857 97 VQEEGELCRWEGNLNSTIQ-KCYEEMIGF------RDIQYLQLSHFPRLKEIWH--GQALPVRFFNYLAELEVDYCTNMS 167 (439)
Q Consensus 97 L~l~~~~~~~~~~~~~~~~-~l~~~~~~~------~~L~~L~l~~~~~l~~i~~--~~~l~~~~~~~L~~L~l~~~~~l~ 167 (439)
|++++|.. ... .+|..+..+ ++|++|+++++. +..++. .. ..+++|+.|+++++ .++
T Consensus 278 L~Ls~n~~--------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l----~~l~~L~~L~L~~N-~l~ 343 (636)
T 4eco_A 278 INVACNRG--------ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL----QKMKKLGMLECLYN-QLE 343 (636)
T ss_dssp EECTTCTT--------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH----TTCTTCCEEECCSC-CCE
T ss_pred EECcCCCC--------CccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh----ccCCCCCEEeCcCC-cCc
Confidence 99998330 112 355554443 778888887654 335443 22 35677777777775 344
Q ss_pred cccchhHHhhccccceeeeccccccchhcc-ccccc--------------cccCccccc-ccccceEecCCccccccccc
Q 046857 168 SAIPANLLRCLNNLARLEVRNCDSLEEMLH-LEELN--------------ADKEHIGPL-FPRLFSLTLIDLPKLKRFCN 231 (439)
Q Consensus 168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~--------------~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~ 231 (439)
+.+| . +..+++|++|+++++. +..++. +.... .....+... +++|+.|+++++.-....+.
T Consensus 344 g~ip-~-~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 344 GKLP-A-FGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EECC-C-CEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred cchh-h-hCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 3355 2 6667777777777653 322221 00000 000000000 12444555544432221111
Q ss_pred CCC----cccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeecccccccc-ccccccCccceEee
Q 046857 232 FTG----NIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLF-DEKVAFPQLRKLRL 304 (439)
Q Consensus 232 ~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l 304 (439)
... ....+++|+.|++.++ .+..++ ..+...+++|+.| +.+.+..++. ...... .....+++|+.|++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNN-QISKFP-KELFSTGSPLSSINLMGNMLTEIPK---NSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCSSCCSBCCS---SSSEETTEECTTGGGCCEEEC
T ss_pred hhcccccccccCCCCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCCCCCCCcCH---HHhccccccccccCCccEEEC
Confidence 110 0013345666666553 333332 2223345666666 4444443221 000000 00112237777887
Q ss_pred cCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC-----CCcccccChhHHhhccccce
Q 046857 305 SGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC-----HGLINVLTLSASKNLVNLGR 379 (439)
Q Consensus 305 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c-----~~l~~l~p~~~~~~l~~L~~ 379 (439)
+++ .++.++..-. ...+++|++|+++++. ++.+|..+..+++|+.|+++++ +++...+|.. +..+++|+.
T Consensus 496 s~N-~l~~lp~~~~--~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~ 570 (636)
T 4eco_A 496 RFN-KLTKLSDDFR--ATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQ 570 (636)
T ss_dssp CSS-CCCBCCGGGS--TTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCE
T ss_pred cCC-cCCccChhhh--hccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCE
Confidence 775 3444443211 0156788888887764 4447777778888888888542 2333334654 456788888
Q ss_pred EEEcccccchhhccccccccCCCceEeccccEEecCCCCCc
Q 046857 380 MKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL 420 (439)
Q Consensus 380 L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l 420 (439)
|++++| .++.++. .+. ++|++|+++++|-.
T Consensus 571 L~Ls~N-~l~~ip~--------~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 571 LQIGSN-DIRKVNE--------KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp EECCSS-CCCBCCS--------CCC--TTCCEEECCSCTTC
T ss_pred EECCCC-cCCccCH--------hHh--CcCCEEECcCCCCc
Confidence 888887 4465553 222 78888888887543
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=9.7e-23 Score=201.29 Aligned_cols=360 Identities=12% Similarity=0.018 Sum_probs=207.9
Q ss_pred cccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCC
Q 046857 9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGI 88 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 88 (439)
.++|++|+|++|...+..+..+. .+++|++|+++++.-...++ ...+..+++|++|++++|......|..+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~--------~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFS--------RLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTS--------SCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred CCccCEEEecCCccCcCChhHhc--------cCccccEEECcCCcccceEC-cccccccccCCEEeCCCCccCccChhhc
Confidence 37899999999864333344444 58899999999843222221 1236678999999999975443457788
Q ss_pred cCccCccceeecCceeeecCcCchhhhhhhhh--hcCCCCccEEEccCCCCceee-cCCCCCCcCccCCccEEEeccccc
Q 046857 89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE--MIGFRDIQYLQLSHFPRLKEI-WHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~i-~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
+.+++|++|++++|.+. ..++.. +..+++|++|+++++. +..+ +... ...+++|++|+++++ .
T Consensus 100 ~~l~~L~~L~L~~n~l~---------~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~~l~~L~~L~L~~n-~ 165 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLD---------GAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASF---FLNMRRFHVLDLTFN-K 165 (455)
T ss_dssp TTCTTCCEEECTTSCCB---------THHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGG---GGGCTTCCEEECTTC-C
T ss_pred cCcccCCEEeCCCCCCC---------ccccCcccccCcccCCEEECCCCc-cCccCcccc---cCCCCcccEEeCCCC-c
Confidence 88999999999984432 122333 5578899999998765 4332 2211 136788999999886 4
Q ss_pred cccccchhHHhhc--cccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCcc
Q 046857 166 MSSAIPANLLRCL--NNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLW 243 (439)
Q Consensus 166 l~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~ 243 (439)
++...+.. +..+ .+|+.|+++++. +..+................ ++|++|+++++.-....+.........++|+
T Consensus 166 l~~~~~~~-l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 166 VKSICEED-LLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp BSCCCTTT-SGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred ccccChhh-hhccccccccccccccCc-ccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhcccccccee
Confidence 55444433 4444 678888888753 33222110000000011122 6788888888743332222211112336677
Q ss_pred EEeEecCCCcceeccc---------cc-cccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCce
Q 046857 244 SLTIENCPDMETFISN---------SV-VHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQ 311 (439)
Q Consensus 244 ~L~l~~c~~l~~~~~~---------~~-~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 311 (439)
.+++.++......... .+ ....++|+.| +.+.+.++++ .....+++|+.|+++++ .+.
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n-~l~ 312 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK---------SVFSHFTDLEQLTLAQN-EIN 312 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT---------TTTTTCTTCCEEECTTS-CCC
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch---------hhcccCCCCCEEECCCC-ccc
Confidence 7777665322211100 00 0012345554 3444444322 12345677788887775 344
Q ss_pred eccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhh
Q 046857 312 HLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEI 391 (439)
Q Consensus 312 ~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~ 391 (439)
.+....+. .+++|++|++++|..-...+..+..+++|++|+++++ +++.+.|. .+..+++|+.|+++++ .++.+
T Consensus 313 ~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~ 386 (455)
T 3v47_A 313 KIDDNAFW---GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSV 386 (455)
T ss_dssp EECTTTTT---TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCC
T ss_pred ccChhHhc---CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccC
Confidence 44333333 6677888888777432223445567778888888775 46666444 3456778888888776 55555
Q ss_pred ccccccccCCCceEeccccEEecCCC
Q 046857 392 IQSQVGEETEDCIVFGKLRYLELDCL 417 (439)
Q Consensus 392 ~~~~~~~~~~~~~~l~~L~~l~l~~c 417 (439)
+.. .+..+++|++|+++++
T Consensus 387 ~~~-------~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 387 PDG-------IFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CTT-------TTTTCTTCCEEECCSS
T ss_pred CHh-------HhccCCcccEEEccCC
Confidence 432 3456777888877663
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=5.9e-23 Score=210.93 Aligned_cols=364 Identities=13% Similarity=0.058 Sum_probs=238.7
Q ss_pred CCCccccCceEEEccccccce-----------------eccccccccccccccccccceeeccccccccccccccCccCC
Q 046857 5 SVGIPNSLVNLNVSYCEKIEE-----------------IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEF 67 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~-----------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 67 (439)
.++++++|++|+|++|...+. +|..++- ..+++|++|+++++.-...++ ..+..+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~------~~l~~L~~L~L~~n~l~~~~p--~~l~~l 272 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW------DNLKDLTDVEVYNCPNLTKLP--TFLKAL 272 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG------GGCTTCCEEEEECCTTCSSCC--TTTTTC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh------cccCCCCEEEecCCcCCccCh--HHHhcC
Confidence 378899999999999985442 5544330 047899999999965444443 337789
Q ss_pred CCccEEeeccCCCcc--ccccCCcCc------cCccceeecCceeeecCcCchhhhhhhh--hhcCCCCccEEEccCCCC
Q 046857 68 PSLERVSMTRCPNMK--TFSQGIVST------PKLHEVQEEGELCRWEGNLNSTIQKCYE--EMIGFRDIQYLQLSHFPR 137 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~--~l~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~ 137 (439)
++|++|++++|..+. .+|..++.+ ++|++|++++|. +..+|. .+..+++|+.|+++++..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~----------l~~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN----------LKTFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC----------CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc----------CCccCchhhhccCCCCCEEeCcCCcC
Confidence 999999999986455 488777766 899999998843 335665 667788899999886653
Q ss_pred ceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccc-cceeeeccccccchhccc-cccc------------c
Q 046857 138 LKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNN-LARLEVRNCDSLEEMLHL-EELN------------A 203 (439)
Q Consensus 138 l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~-~~~~------------~ 203 (439)
...++ .. ..+++|+.|+++++ .++ .+|.. +..+++ |++|+++++. +..++.. .... .
T Consensus 343 ~g~ip-~~----~~l~~L~~L~L~~N-~l~-~lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 343 EGKLP-AF----GSEIKLASLNLAYN-QIT-EIPAN-FCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EEECC-CC----EEEEEESEEECCSS-EEE-ECCTT-SEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred ccchh-hh----CCCCCCCEEECCCC-ccc-cccHh-hhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCc
Confidence 32655 22 35777888888776 344 35655 666777 8888887653 3333321 0000 0
Q ss_pred cc----Cccc-------ccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceecccccc------cccc
Q 046857 204 DK----EHIG-------PLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVV------HVTT 266 (439)
Q Consensus 204 ~~----~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~------~~~~ 266 (439)
.. ..+. .. ++|+.|+++++ .+..++... ...+++|+.|++.++ .+..++...+. ..++
T Consensus 414 l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N-~l~~lp~~~--~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKG-INVSSINLSNN-QISKFPKEL--FSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCC-CCEEEEECCSS-CCCSCCTHH--HHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGG
T ss_pred CCCcchhhhcccccccccC-CCCCEEECcCC-ccCcCCHHH--HccCCCCCEEECCCC-CCCCcCHHHhccccccccccC
Confidence 00 0111 23 69999999997 455554332 235799999999996 45555443221 1223
Q ss_pred CCCCC--CccCcceeeeecccccccccccc--ccCccceEeecCCCCceeccccCCccccccCCcceEEeec------CC
Q 046857 267 DNKEP--QKLTLEEYFLLAHQVQPLFDEKV--AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISE------CS 336 (439)
Q Consensus 267 ~L~~L--~~~~l~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~------c~ 336 (439)
+|+.| +.+.+..++. ... .+++|+.|+++++. ++.++.. +. .+++|++|++++ +.
T Consensus 489 ~L~~L~Ls~N~l~~lp~----------~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~~---~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSD----------DFRATTLPYLVGIDLSYNS-FSKFPTQ-PL---NSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp GCCEEECCSSCCCBCCG----------GGSTTTCTTCCEEECCSSC-CSSCCCG-GG---GCSSCCEEECCSCBCTTCCB
T ss_pred CccEEECcCCcCCccCh----------hhhhccCCCcCEEECCCCC-CCCcChh-hh---cCCCCCEEECCCCcccccCc
Confidence 78887 6666665322 233 77899999999864 5544332 22 789999999954 44
Q ss_pred CcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccc-cccCCCceEeccccEEecC
Q 046857 337 KLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQV-GEETEDCIVFGKLRYLELD 415 (439)
Q Consensus 337 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~~~~~~l~~L~~l~l~ 415 (439)
....+|..+..+++|++|++++|+ ++.+ |..+. ++|+.|++++|+ +..+..... .........+...+..+++
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~i-p~~~~---~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 627 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSND-IRKV-NEKIT---PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIR 627 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSC-CCBC-CSCCC---TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEE
T ss_pred ccccChHHHhcCCCCCEEECCCCc-CCcc-CHhHh---CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccC
Confidence 456788889999999999999965 6776 76432 799999999994 333322110 0011133445555667888
Q ss_pred CCCCcc
Q 046857 416 CLPSLT 421 (439)
Q Consensus 416 ~c~~l~ 421 (439)
+||.|+
T Consensus 628 ~C~~L~ 633 (636)
T 4eco_A 628 GCDALD 633 (636)
T ss_dssp SCGGGC
T ss_pred CCcccc
Confidence 999875
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=8.1e-22 Score=201.83 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=47.9
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
.|+++++|++|+|++|...+..+..++ .+++|++|+++++ ++..... ..+..+++|++|++++|. +..+
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~--------~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-i~~l 120 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQ--------SQHRLDTLVLTAN-PLIFMAE-TALSGPKALKHLFFIQTG-ISSI 120 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTT--------TCTTCCEEECTTC-CCSEECT-TTTSSCTTCCEEECTTSC-CSCG
T ss_pred HhccCccceEEECCCCccceeChhhcc--------CccccCeeeCCCC-cccccCh-hhhcccccccEeeccccC-cccC
Confidence 577888888888888864443344444 3566666666662 2222211 124455566666665542 3333
Q ss_pred -ccCCcCccCccceeecCce
Q 046857 85 -SQGIVSTPKLHEVQEEGEL 103 (439)
Q Consensus 85 -~~~~~~l~~L~~L~l~~~~ 103 (439)
+..++.+++|++|++++|.
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~ 140 (606)
T 3t6q_A 121 DFIPLHNQKTLESLYLGSNH 140 (606)
T ss_dssp GGSCCTTCTTCCEEECCSSC
T ss_pred CcchhccCCcccEEECCCCc
Confidence 3445555555555555543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.1e-22 Score=208.31 Aligned_cols=115 Identities=17% Similarity=0.052 Sum_probs=77.6
Q ss_pred cccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857 294 VAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 294 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
..+++|+.|+++++. +.......+. .+++|++|++++|..... +|..+..+++|++|++++| +++.+.|. .+.
T Consensus 421 ~~l~~L~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~ 494 (606)
T 3vq2_A 421 LSLEKLLYLDISYTN-TKIDFDGIFL---GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFD 494 (606)
T ss_dssp TTCTTCCEEECTTSC-CEECCTTTTT---TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTT
T ss_pred hccccCCEEECcCCC-CCccchhhhc---CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhc
Confidence 355677777777764 3333323233 678888888888754442 5667778888888888886 57666444 356
Q ss_pred hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCccee
Q 046857 373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSLTSF 423 (439)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l~~~ 423 (439)
.+++|+.|++++| .+..+... .+..+++|++|++++|. ++.+
T Consensus 495 ~l~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~l~~N~-l~~~ 536 (606)
T 3vq2_A 495 TLHRLQLLNMSHN-NLLFLDSS-------HYNQLYSLSTLDCSFNR-IETS 536 (606)
T ss_dssp TCTTCCEEECCSS-CCSCEEGG-------GTTTCTTCCEEECTTSC-CCCE
T ss_pred ccccCCEEECCCC-cCCCcCHH-------HccCCCcCCEEECCCCc-Cccc
Confidence 7888889988888 55444221 56678899999998874 4443
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=9.9e-23 Score=213.64 Aligned_cols=359 Identities=9% Similarity=0.075 Sum_probs=246.8
Q ss_pred CCCccccCceEEEccccccce-----------------eccccccccccccccccccceeeccccccccccccccCccCC
Q 046857 5 SVGIPNSLVNLNVSYCEKIEE-----------------IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEF 67 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~-----------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 67 (439)
.|+++++|+.|+|++|...+. +|..++ +..+++|++|+++++.-...++ ..+..+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~------f~~L~~L~~L~Ls~N~l~~~iP--~~l~~L 514 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS------WSNLKDLTDVELYNCPNMTQLP--DFLYDL 514 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC------GGGCTTCCEEEEESCTTCCSCC--GGGGGC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh------hccCCCCCEEECcCCCCCccCh--HHHhCC
Confidence 478999999999999985552 454432 1158899999999965444444 337889
Q ss_pred CCccEEeeccCCCcc--ccccCCcCcc-------CccceeecCceeeecCcCchhhhhhhh--hhcCCCCccEEEccCCC
Q 046857 68 PSLERVSMTRCPNMK--TFSQGIVSTP-------KLHEVQEEGELCRWEGNLNSTIQKCYE--EMIGFRDIQYLQLSHFP 136 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~--~l~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~ 136 (439)
++|++|++++|..+. .+|..++.++ +|++|++++|. +..+|. .+..+++|+.|+++++.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~----------L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN----------LEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC----------CCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc----------CCccCChhhhhcCCCCCEEECCCCC
Confidence 999999999986465 4777666555 99999999943 335666 67789999999999776
Q ss_pred CceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccc-cceeeeccccccchhccccccccccCccccccccc
Q 046857 137 RLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNN-LARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRL 215 (439)
Q Consensus 137 ~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 215 (439)
+..++ .. ..+++|+.|+++++. ++ .+|.. +..+++ |++|++++|. +..++..-.. ... ++|
T Consensus 585 -l~~lp-~~----~~L~~L~~L~Ls~N~-l~-~lp~~-l~~l~~~L~~L~Ls~N~-L~~lp~~~~~-------~~~-~~L 646 (876)
T 4ecn_A 585 -VRHLE-AF----GTNVKLTDLKLDYNQ-IE-EIPED-FCAFTDQVEGLGFSHNK-LKYIPNIFNA-------KSV-YVM 646 (876)
T ss_dssp -CCBCC-CC----CTTSEESEEECCSSC-CS-CCCTT-SCEECTTCCEEECCSSC-CCSCCSCCCT-------TCS-SCE
T ss_pred -cccch-hh----cCCCcceEEECcCCc-cc-cchHH-HhhccccCCEEECcCCC-CCcCchhhhc-------ccc-CCC
Confidence 55666 22 468999999999974 55 46766 778888 9999999874 4454431110 001 459
Q ss_pred ceEecCCcccccccccCCC--cccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeecccccccc-
Q 046857 216 FSLTLIDLPKLKRFCNFTG--NIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLF- 290 (439)
Q Consensus 216 ~~L~l~~~~~l~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~- 290 (439)
+.|+++++.-...++.... ....+++|+.|++.++ .+..+ +..+...+++|+.| +.+.+..++. ......
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~L~~ip~---~~~~~~~ 721 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNLMTSIPE---NSLKPKD 721 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCCCSCCCT---TSSSCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCcCCccCh---HHhcccc
Confidence 9999998854333221110 1124568999999986 45544 33344578889988 6666665322 000000
Q ss_pred ccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC-----CCcccc
Q 046857 291 DEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC-----HGLINV 365 (439)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c-----~~l~~l 365 (439)
.....+++|+.|+++++ .+..++..-. ...+++|+.|+++++. ++.+|..+..+++|+.|+++++ +++...
T Consensus 722 ~~l~nl~~L~~L~Ls~N-~L~~lp~~l~--~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFN-KLTSLSDDFR--ATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp SCCTTGGGCCEEECCSS-CCCCCCGGGS--TTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccccCCccEEECCCC-CCccchHHhh--hccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence 01123458999999986 4665543311 0167899999999874 5568888889999999999763 234444
Q ss_pred cChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCCCc
Q 046857 366 LTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL 420 (439)
Q Consensus 366 ~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l 420 (439)
+|.. +..+++|+.|++++| .++.++. .+ .++|+.|++++|+-.
T Consensus 798 ip~~-l~~L~~L~~L~Ls~N-~L~~Ip~--------~l--~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 798 WPTG-ITTCPSLIQLQIGSN-DIRKVDE--------KL--TPQLYILDIADNPNI 840 (876)
T ss_dssp CCTT-GGGCSSCCEEECCSS-CCCBCCS--------CC--CSSSCEEECCSCTTC
T ss_pred ChHH-HhcCCCCCEEECCCC-CCCccCH--------hh--cCCCCEEECCCCCCC
Confidence 4664 467999999999999 5576654 22 269999999999754
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.7e-22 Score=206.79 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=66.7
Q ss_pred cccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhh
Q 046857 294 VAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKN 373 (439)
Q Consensus 294 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~ 373 (439)
..+++|+.|+++++.- .............+++|++|++++|......|..+..+++|++|+++++ +++...|. .+..
T Consensus 446 ~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~ 522 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHF-PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIE-ALSH 522 (606)
T ss_dssp TTCTTCCEEECTTCBC-GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGG-GGTT
T ss_pred hCCCCCCEEECCCCCC-CccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChh-HhCc
Confidence 3456777777776532 2110000011125677777777777443334556667777777777775 46655343 3456
Q ss_pred ccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 374 LVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 374 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
+++| .|++++| .+..++.. .+..+++|++++++++|
T Consensus 523 l~~L-~L~L~~N-~l~~~~~~-------~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 523 LKGI-YLNLASN-HISIILPS-------LLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSC-EEECCSS-CCCCCCGG-------GHHHHHTSSEEECTTCC
T ss_pred cccc-EEECcCC-cccccCHh-------hcccCCCCCEEeCCCCC
Confidence 6777 7777777 44444321 45677888999998864
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=4.5e-22 Score=197.11 Aligned_cols=323 Identities=15% Similarity=0.214 Sum_probs=168.5
Q ss_pred CCCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc
Q 046857 3 LGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK 82 (439)
Q Consensus 3 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 82 (439)
++.+..+++|++|++++|. +..++. +. .+++|++|+++++ .+... +.+..+++|++|++++| .++
T Consensus 61 l~~~~~l~~L~~L~Ls~n~-l~~~~~-~~--------~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n-~l~ 125 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQ-LTDITP-LK--------NLTKLVDILMNNN-QIADI---TPLANLTNLTGLTLFNN-QIT 125 (466)
T ss_dssp CTTGGGCTTCCEEECCSSC-CCCCGG-GT--------TCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCC
T ss_pred CcchhhhcCCCEEECCCCc-cCCchh-hh--------ccccCCEEECCCC-ccccC---hhhcCCCCCCEEECCCC-CCC
Confidence 4556667777777777764 444433 22 4667777777773 22222 22566777777777775 455
Q ss_pred ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecc
Q 046857 83 TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDY 162 (439)
Q Consensus 83 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~ 162 (439)
.++. +..+++|++|++++|.+... + .+..+++|++|++.+. +..+. +...+++|+.|++++
T Consensus 126 ~~~~-~~~l~~L~~L~l~~n~l~~~----------~-~~~~l~~L~~L~l~~~--~~~~~-----~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 126 DIDP-LKNLTNLNRLELSSNTISDI----------S-ALSGLTSLQQLSFGNQ--VTDLK-----PLANLTTLERLDISS 186 (466)
T ss_dssp CCGG-GTTCTTCSEEEEEEEEECCC----------G-GGTTCTTCSEEEEEES--CCCCG-----GGTTCTTCCEEECCS
T ss_pred CChH-HcCCCCCCEEECCCCccCCC----------h-hhccCCcccEeecCCc--ccCch-----hhccCCCCCEEECcC
Confidence 5544 66777777777776543321 1 1334566666666421 11111 113466677777666
Q ss_pred ccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCc
Q 046857 163 CTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPML 242 (439)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L 242 (439)
+. +++ ++ .+..+++|++|++++|. +....++. .+++|+.|+++++. ++.++ ....+++|
T Consensus 187 n~-l~~-~~--~l~~l~~L~~L~l~~n~-l~~~~~~~-----------~l~~L~~L~l~~n~-l~~~~----~l~~l~~L 245 (466)
T 1o6v_A 187 NK-VSD-IS--VLAKLTNLESLIATNNQ-ISDITPLG-----------ILTNLDELSLNGNQ-LKDIG----TLASLTNL 245 (466)
T ss_dssp SC-CCC-CG--GGGGCTTCSEEECCSSC-CCCCGGGG-----------GCTTCCEEECCSSC-CCCCG----GGGGCTTC
T ss_pred Cc-CCC-Ch--hhccCCCCCEEEecCCc-cccccccc-----------ccCCCCEEECCCCC-cccch----hhhcCCCC
Confidence 53 433 22 15556667777766653 22222111 12666666666652 33321 12355666
Q ss_pred cEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcc
Q 046857 243 WSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDES 320 (439)
Q Consensus 243 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 320 (439)
+.|++.++. +...++ ...+++|+.| +.+.+..+. ....+++|+.|+++++. +..+.. +
T Consensus 246 ~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~-----------~~~~l~~L~~L~L~~n~-l~~~~~--~-- 305 (466)
T 1o6v_A 246 TDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQISNIS-----------PLAGLTALTNLELNENQ-LEDISP--I-- 305 (466)
T ss_dssp SEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCCCCG-----------GGTTCTTCSEEECCSSC-CSCCGG--G--
T ss_pred CEEECCCCc-cccchh---hhcCCCCCEEECCCCccCccc-----------cccCCCccCeEEcCCCc-ccCchh--h--
Confidence 666666642 333322 2455566655 334444321 13345666666666642 332211 1
Q ss_pred ccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccC
Q 046857 321 NKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEET 400 (439)
Q Consensus 321 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 400 (439)
..+++|++|++++|. ++.+++ +..+++|++|++++| .++.+ + .+..+++|+.|++++| .+.+..
T Consensus 306 -~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~l~~n-~l~~~~-------- 369 (466)
T 1o6v_A 306 -SNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNN-KVSDV-S--SLANLTNINWLSAGHN-QISDLT-------- 369 (466)
T ss_dssp -GGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSS-CCCCC-G--GGTTCTTCCEEECCSS-CCCBCG--------
T ss_pred -cCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCC-ccCCc-h--hhccCCCCCEEeCCCC-ccCccc--------
Confidence 156666666666663 333322 456666666666664 35544 2 2345666666666666 332221
Q ss_pred CCceEeccccEEecCCC
Q 046857 401 EDCIVFGKLRYLELDCL 417 (439)
Q Consensus 401 ~~~~~l~~L~~l~l~~c 417 (439)
.+..+++|+.|++++|
T Consensus 370 -~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 370 -PLANLTRITQLGLNDQ 385 (466)
T ss_dssp -GGTTCTTCCEEECCCE
T ss_pred -hhhcCCCCCEEeccCC
Confidence 2345566666666665
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.3e-22 Score=210.92 Aligned_cols=343 Identities=13% Similarity=0.060 Sum_probs=219.9
Q ss_pred ccccccccceeeccccccccc------------------cccccCcc--CCCCccEEeeccCCCccccccCCcCccCccc
Q 046857 37 NRIAFSNLKVLILDYLPRLTS------------------FCLENYTL--EFPSLERVSMTRCPNMKTFSQGIVSTPKLHE 96 (439)
Q Consensus 37 ~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 96 (439)
.+..+++|++|+++++. +.. ++ ..++ .+++|++|++++|.....+|..++.+++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred HHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCC--hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 34468899999998842 333 22 3345 7899999999998777788888889999999
Q ss_pred eeecCce-eeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC--CCCCCcCccCCccEEEeccccccccccchh
Q 046857 97 VQEEGEL-CRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH--GQALPVRFFNYLAELEVDYCTNMSSAIPAN 173 (439)
Q Consensus 97 L~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 173 (439)
|++++|. +.. ..+...+..++..+..+++|+.|+++++. +..+|. .. ..+++|+.|+++++. ++ .+| .
T Consensus 520 L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l----~~L~~L~~L~Ls~N~-l~-~lp-~ 590 (876)
T 4ecn_A 520 LNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL----QKMVKLGLLDCVHNK-VR-HLE-A 590 (876)
T ss_dssp EECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH----TTCTTCCEEECTTSC-CC-BCC-C
T ss_pred EECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh----hcCCCCCEEECCCCC-cc-cch-h
Confidence 9998843 210 00011112222122345589999998765 446554 22 468889999998864 55 356 3
Q ss_pred HHhhccccceeeeccccccchhccccccccccCcccccccc-cceEecCCcccccccccCCCcccCCCCccEEeEecCCC
Q 046857 174 LLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPR-LFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPD 252 (439)
Q Consensus 174 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 252 (439)
++.+++|++|+++++. +..++. .+..+ ++ |+.|+++++. +..++.... ....++|+.|++.++.
T Consensus 591 -~~~L~~L~~L~Ls~N~-l~~lp~---------~l~~l-~~~L~~L~Ls~N~-L~~lp~~~~-~~~~~~L~~L~Ls~N~- 655 (876)
T 4ecn_A 591 -FGTNVKLTDLKLDYNQ-IEEIPE---------DFCAF-TDQVEGLGFSHNK-LKYIPNIFN-AKSVYVMGSVDFSYNK- 655 (876)
T ss_dssp -CCTTSEESEEECCSSC-CSCCCT---------TSCEE-CTTCCEEECCSSC-CCSCCSCCC-TTCSSCEEEEECCSSC-
T ss_pred -hcCCCcceEEECcCCc-cccchH---------HHhhc-cccCCEEECcCCC-CCcCchhhh-ccccCCCCEEECcCCc-
Confidence 7888999999999764 334332 12223 77 9999999875 556654332 2233459999998864
Q ss_pred cceeccc----cccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcc----cc
Q 046857 253 METFISN----SVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDES----NK 322 (439)
Q Consensus 253 l~~~~~~----~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~----~~ 322 (439)
+...++. .....+++|+.| +.+.+..++. .....+++|+.|+++++ .+..++...+.. .+
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~---------~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT---------ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH---------HHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCT
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCCccCH---------HHHccCCCCCEEECCCC-cCCccChHHhcccccccc
Confidence 3222111 011134467766 5555554321 01125689999999986 566665443221 11
Q ss_pred ccCCcceEEeecCCCcccccCCCc--cCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccC
Q 046857 323 VFANLERLEISECSKLQKLVPPSW--HLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEET 400 (439)
Q Consensus 323 ~~~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 400 (439)
.+++|++|++++| .++.+|..+. .+++|+.|+++++ .++.+ |.. +..+++|+.|++++++.+..-.. .+..+
T Consensus 726 nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~N~l--~~~ip 799 (876)
T 4ecn_A 726 NTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSF-PTQ-PLNSSQLKAFGIRHQRDAEGNRI--LRQWP 799 (876)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSC-CCG-GGGCTTCCEEECCCCBCTTCCBC--CCCCC
T ss_pred ccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCcc-chh-hhcCCCCCEEECCCCCCcccccc--cccCh
Confidence 3449999999998 5668888776 8999999999985 57775 765 45899999999987542111100 11122
Q ss_pred CCceEeccccEEecCCCCCccee
Q 046857 401 EDCIVFGKLRYLELDCLPSLTSF 423 (439)
Q Consensus 401 ~~~~~l~~L~~l~l~~c~~l~~~ 423 (439)
..+.++++|++|++++|.- +.+
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBC
T ss_pred HHHhcCCCCCEEECCCCCC-Ccc
Confidence 3677899999999998854 443
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=9.9e-22 Score=187.01 Aligned_cols=106 Identities=15% Similarity=0.132 Sum_probs=76.6
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
...+++|+.|+++++ .++.+. .+ ..+++|++|++++| .++.++ .+..+++|++|++++| .++...+ ..+.
T Consensus 239 ~~~l~~L~~L~l~~n-~l~~~~--~~---~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~l~ 308 (347)
T 4fmz_A 239 LANLSQLTWLEIGTN-QISDIN--AV---KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDM-EVIG 308 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG--GG---TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGH-HHHH
T ss_pred hhcCCCCCEEECCCC-ccCCCh--hH---hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcCh-hHhh
Confidence 446778999998886 344432 12 27889999999888 455553 4678899999999987 4666534 3466
Q ss_pred hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
.+++|+.|++++| .++.+. .+..+++|+++++++|+
T Consensus 309 ~l~~L~~L~L~~n-~l~~~~---------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 GLTNLTTLFLSQN-HITDIR---------PLASLSKMDSADFANQV 344 (347)
T ss_dssp TCTTCSEEECCSS-SCCCCG---------GGGGCTTCSEESSSCC-
T ss_pred ccccCCEEEccCC-cccccc---------Chhhhhccceeehhhhc
Confidence 8899999999998 455443 35668899999998875
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=4.9e-22 Score=203.42 Aligned_cols=355 Identities=15% Similarity=0.030 Sum_probs=205.6
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc-c
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK-T 83 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~ 83 (439)
.|+++++|++|+|++|......+..++ .+++|++|+++++ ++...+.. .+..+++|++|++++|.... .
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~--------~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQSFSPGSFS--------GLTSLENLVAVET-KLASLESF-PIGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCCCCTTSST--------TCTTCCEEECTTS-CCCCSSSS-CCTTCTTCCEEECCSSCCCCCC
T ss_pred HhhchhhcCEeECCCCcccccChhhcC--------CcccCCEEEccCC-cccccccc-ccCCCCCCCEEeCCCCccccee
Confidence 478899999999999974444455555 5789999999883 33333222 26778889999998874332 4
Q ss_pred cccCCcCccCccceeecCceeeecCc--C----------------chhhhhhhhhhcCCCCccEEEccCCCC--------
Q 046857 84 FSQGIVSTPKLHEVQEEGELCRWEGN--L----------------NSTIQKCYEEMIGFRDIQYLQLSHFPR-------- 137 (439)
Q Consensus 84 l~~~~~~l~~L~~L~l~~~~~~~~~~--~----------------~~~~~~l~~~~~~~~~L~~L~l~~~~~-------- 137 (439)
+|..++.+++|++|+++++.+..... + .+.+..++.......+|++|+++++..
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 224 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHH
T ss_pred chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHH
Confidence 68888888899999888875443211 0 001111222222223455555544321
Q ss_pred ------------------------------------------------------------------------ceeecCCC
Q 046857 138 ------------------------------------------------------------------------LKEIWHGQ 145 (439)
Q Consensus 138 ------------------------------------------------------------------------l~~i~~~~ 145 (439)
+..++ .
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~- 302 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-D- 302 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-C-
T ss_pred hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-h-
Confidence 11111 0
Q ss_pred CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc-
Q 046857 146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP- 224 (439)
Q Consensus 146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~- 224 (439)
...+++|++|++.+|.. +. +| . + .+++|++|+++++..+... . ...+ ++|+.|+++++.
T Consensus 303 ---l~~~~~L~~L~l~~n~l-~~-lp-~-~-~l~~L~~L~l~~n~~~~~~-~----------~~~l-~~L~~L~ls~n~l 362 (606)
T 3vq2_A 303 ---VPKHFKWQSLSIIRCQL-KQ-FP-T-L-DLPFLKSLTLTMNKGSISF-K----------KVAL-PSLSYLDLSRNAL 362 (606)
T ss_dssp ---CCTTCCCSEEEEESCCC-SS-CC-C-C-CCSSCCEEEEESCSSCEEC-C----------CCCC-TTCCEEECCSSCE
T ss_pred ---ccccccCCEEEcccccC-cc-cc-c-C-CCCccceeeccCCcCccch-h----------hccC-CCCCEEECcCCcc
Confidence 11344555555555532 22 34 2 2 4555555555554322211 0 0112 444555444432
Q ss_pred ------------------------cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcce
Q 046857 225 ------------------------KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEE 278 (439)
Q Consensus 225 ------------------------~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~ 278 (439)
.+..++... ..+++|+.|++.++ .+...++......+++|+.| +.+.+..
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF---MGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEEECCCC---TTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCCcchhhhhccCCcccEeECCCCccccchhhc---cCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCc
Confidence 122222111 24455555555553 22222222223455555555 3333433
Q ss_pred eeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEcc
Q 046857 279 YFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSK 358 (439)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 358 (439)
..+ .....+++|+.|+++++.-........+. .+++|++|++++|......|..+..+++|++|++++
T Consensus 439 ~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 439 DFD---------GIFLGLTSLNTLKMAGNSFKDNTLSNVFA---NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CCT---------TTTTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cch---------hhhcCCCCCCEEECCCCcCCCcchHHhhc---cCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 221 23456789999999987432212222233 789999999999965555566778999999999999
Q ss_pred CCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEec-cccEEecCCCC
Q 046857 359 CHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFG-KLRYLELDCLP 418 (439)
Q Consensus 359 c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~-~L~~l~l~~c~ 418 (439)
| +++.++|. .+..+++|+.|++++| .++.++. .+..++ +|++++++++|
T Consensus 507 N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~p~--------~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 507 N-NLLFLDSS-HYNQLYSLSTLDCSFN-RIETSKG--------ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp S-CCSCEEGG-GTTTCTTCCEEECTTS-CCCCEES--------CGGGSCTTCCEEECCSCC
T ss_pred C-cCCCcCHH-HccCCCcCCEEECCCC-cCcccCH--------hHhhhcccCcEEEccCCC
Confidence 6 57777555 4578999999999999 5777664 466676 59999998854
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=198.30 Aligned_cols=226 Identities=18% Similarity=0.138 Sum_probs=132.8
Q ss_pred ccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccc
Q 046857 151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC 230 (439)
Q Consensus 151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 230 (439)
.+++|+.|++.++. ++. +|.. +..+ +|++|++.+|. +..++.. .+++|+.|++.++.....++
T Consensus 280 ~l~~L~~L~l~~~~-l~~-l~~~-~~~~-~L~~L~l~~n~-~~~l~~~------------~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 280 CLTNVSSFSLVSVT-IER-VKDF-SYNF-GWQHLELVNCK-FGQFPTL------------KLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp GGTTCSEEEEESCE-ECS-CCBC-CSCC-CCSEEEEESCB-CSSCCBC------------BCSSCCEEEEESCBSCCBCC
T ss_pred CcCcccEEEecCcc-chh-hhhh-hccC-CccEEeeccCc-ccccCcc------------cccccCEEeCcCCccccccc
Confidence 46788889888863 443 4554 5556 88888888764 3333220 12444444444443222111
Q ss_pred c---------------------CCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccc
Q 046857 231 N---------------------FTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQ 287 (439)
Q Consensus 231 ~---------------------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~ 287 (439)
. .......+++|+.|++.++ .+..+++. ...+++|+.| +.+.+....+
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~------ 413 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSNLKQMSE------ 413 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSEEESCTT------
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-cccccccc--ccccCCCCEEEccCCccccccc------
Confidence 1 0001124455555555553 23332221 2344555554 2222222110
Q ss_pred cccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCc-ccccCCCccCCCcceEEEccCCCccccc
Q 046857 288 PLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKL-QKLVPPSWHLENLWGLQVSKCHGLINVL 366 (439)
Q Consensus 288 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 366 (439)
......+++|++|+++++. +.......+. .+++|++|++++|... ..+|..+..+++|++|++++| +++.+.
T Consensus 414 --~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~ 486 (570)
T 2z63_A 414 --FSVFLSLRNLIYLDISHTH-TRVAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS 486 (570)
T ss_dssp --SCTTTTCTTCCEEECTTSC-CEECCTTTTT---TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC
T ss_pred --hhhhhcCCCCCEEeCcCCc-ccccchhhhh---cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCC
Confidence 0123456788888888864 4443333233 6889999999988654 357788888999999999986 477764
Q ss_pred ChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 367 TLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 367 p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
|. .+..+++|+.|++++| .++.++.. .+..+++|++++++++|
T Consensus 487 ~~-~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 487 PT-AFNSLSSLQVLNMASN-QLKSVPDG-------IFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TT-TTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred hh-hhhcccCCCEEeCCCC-cCCCCCHH-------HhhcccCCcEEEecCCc
Confidence 54 3567899999999988 66665432 46678899999998853
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=198.03 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=66.5
Q ss_pred ccCccceEeecCCCCceeccc-cCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcc-cccChhHHh
Q 046857 295 AFPQLRKLRLSGLHKVQHLWK-ENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLI-NVLTLSASK 372 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~l~p~~~~~ 372 (439)
.+++|+.|+++++. +..... ..+. .+++|++|++++|......+..+..+++|++|++++|. ++ ..+|. .+.
T Consensus 394 ~l~~L~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~-~~~ 467 (570)
T 2z63_A 394 GLEQLEHLDFQHSN-LKQMSEFSVFL---SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPD-IFT 467 (570)
T ss_dssp TCTTCCEEECTTSE-EESCTTSCTTT---TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECS-CCT
T ss_pred ccCCCCEEEccCCc-cccccchhhhh---cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-Cccccchh-hhh
Confidence 44566666666542 222211 1122 56777888887775555555666677888888887764 43 22354 345
Q ss_pred hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857 373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL 417 (439)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c 417 (439)
.+++|+.|++++| .++.+... .+..+++|++|++++|
T Consensus 468 ~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 468 ELRNLTFLDLSQC-QLEQLSPT-------AFNSLSSLQVLNMASN 504 (570)
T ss_dssp TCTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS
T ss_pred cccCCCEEECCCC-ccccCChh-------hhhcccCCCEEeCCCC
Confidence 6778888888877 44444221 4566788888888775
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=9.5e-22 Score=198.90 Aligned_cols=78 Identities=23% Similarity=0.200 Sum_probs=54.0
Q ss_pred CCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCce
Q 046857 325 ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCI 404 (439)
Q Consensus 325 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 404 (439)
++|++|++++| .++.+ ...+++|++|+++++ +++.+ |. ...+++|+.|+++++ .++.++.. .+.
T Consensus 431 ~~L~~L~Ls~N-~l~~~---~~~l~~L~~L~Ls~N-~l~~i-p~--~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~ 494 (549)
T 2z81_A 431 QTLEVLDVSNN-NLDSF---SLFLPRLQELYISRN-KLKTL-PD--ASLFPVLLVMKISRN-QLKSVPDG-------IFD 494 (549)
T ss_dssp TTCSEEECCSS-CCSCC---CCCCTTCCEEECCSS-CCSSC-CC--GGGCTTCCEEECCSS-CCCCCCTT-------GGG
T ss_pred CCceEEECCCC-Chhhh---cccCChhcEEECCCC-ccCcC-CC--cccCccCCEEecCCC-ccCCcCHH-------HHh
Confidence 45666666655 23333 246888999999885 57765 65 246889999999887 66555432 467
Q ss_pred EeccccEEecCCCC
Q 046857 405 VFGKLRYLELDCLP 418 (439)
Q Consensus 405 ~l~~L~~l~l~~c~ 418 (439)
.+++|++++++++|
T Consensus 495 ~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 495 RLTSLQKIWLHTNP 508 (549)
T ss_dssp GCTTCCEEECCSSC
T ss_pred cCcccCEEEecCCC
Confidence 78899999998875
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=9.7e-21 Score=187.50 Aligned_cols=319 Identities=15% Similarity=0.184 Sum_probs=226.0
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
.+++|+.|++.+|. +..++. +. .+++|++|+++++ .+.++ +.+..+++|++|++++| .+..++.
T Consensus 44 ~l~~l~~L~l~~~~-i~~l~~-~~--------~l~~L~~L~Ls~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~~- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSIDG-VE--------YLNNLTQINFSNN-QLTDI---TPLKNLTKLVDILMNNN-QIADITP- 107 (466)
T ss_dssp HHHTCCEEECCSSC-CCCCTT-GG--------GCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCGG-
T ss_pred HhccccEEecCCCC-CccCcc-hh--------hhcCCCEEECCCC-ccCCc---hhhhccccCCEEECCCC-ccccChh-
Confidence 36789999999885 444443 22 5889999999994 34444 33778999999999997 4565655
Q ss_pred CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857 88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS 167 (439)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~ 167 (439)
++.+++|++|++++|.+.. ++. +..+++|++|+++++. +..++. ...+++|+.|++.+ .+.
T Consensus 108 ~~~l~~L~~L~L~~n~l~~----------~~~-~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~--~~~ 168 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITD----------IDP-LKNLTNLNRLELSSNT-ISDISA-----LSGLTSLQQLSFGN--QVT 168 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC----------CGG-GTTCTTCSEEEEEEEE-ECCCGG-----GTTCTTCSEEEEEE--SCC
T ss_pred hcCCCCCCEEECCCCCCCC----------ChH-HcCCCCCCEEECCCCc-cCCChh-----hccCCcccEeecCC--ccc
Confidence 8889999999999854332 221 4568999999999765 444332 14688999999964 344
Q ss_pred cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeE
Q 046857 168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTI 247 (439)
Q Consensus 168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 247 (439)
.. +. +..+++|++|+++++. +..+..+ ..+ ++|++|+++++. +..+.. ...+++|+.|++
T Consensus 169 ~~-~~--~~~l~~L~~L~l~~n~-l~~~~~l----------~~l-~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l 228 (466)
T 1o6v_A 169 DL-KP--LANLTTLERLDISSNK-VSDISVL----------AKL-TNLESLIATNNQ-ISDITP----LGILTNLDELSL 228 (466)
T ss_dssp CC-GG--GTTCTTCCEEECCSSC-CCCCGGG----------GGC-TTCSEEECCSSC-CCCCGG----GGGCTTCCEEEC
T ss_pred Cc-hh--hccCCCCCEEECcCCc-CCCChhh----------ccC-CCCCEEEecCCc-cccccc----ccccCCCCEEEC
Confidence 32 22 7789999999999874 4433221 223 899999999884 333321 236799999999
Q ss_pred ecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccC
Q 046857 248 ENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFA 325 (439)
Q Consensus 248 ~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 325 (439)
.++ .+..++ ....+++|+.| +.+.+.++. ....+++|+.|+++++. +..+.. + ..++
T Consensus 229 ~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~-----------~~~~l~~L~~L~l~~n~-l~~~~~--~---~~l~ 287 (466)
T 1o6v_A 229 NGN-QLKDIG---TLASLTNLTDLDLANNQISNLA-----------PLSGLTKLTELKLGANQ-ISNISP--L---AGLT 287 (466)
T ss_dssp CSS-CCCCCG---GGGGCTTCSEEECCSSCCCCCG-----------GGTTCTTCSEEECCSSC-CCCCGG--G---TTCT
T ss_pred CCC-Ccccch---hhhcCCCCCEEECCCCccccch-----------hhhcCCCCCEEECCCCc-cCcccc--c---cCCC
Confidence 986 344442 24578888888 555555532 25577899999999863 444322 2 2789
Q ss_pred CcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceE
Q 046857 326 NLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIV 405 (439)
Q Consensus 326 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 405 (439)
+|++|++++|. ++.++. +..+++|++|++++| +++++.| ...+++|+.|++++| .+..+. .+..
T Consensus 288 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~---------~l~~ 351 (466)
T 1o6v_A 288 ALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS---------SLAN 351 (466)
T ss_dssp TCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG---------GGTT
T ss_pred ccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch---------hhcc
Confidence 99999999974 555544 678999999999997 4777634 468899999999998 565542 5667
Q ss_pred eccccEEecCCCC
Q 046857 406 FGKLRYLELDCLP 418 (439)
Q Consensus 406 l~~L~~l~l~~c~ 418 (439)
+++|++|++++|+
T Consensus 352 l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 352 LTNINWLSAGHNQ 364 (466)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEeCCCCc
Confidence 8999999988763
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.3e-20 Score=180.44 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=71.9
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
...+++|+.|+++++ .++.+....+. .+++|++|+++++ .++.++.....+++|++|++++| +++.+ |.. ..
T Consensus 244 l~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~-~~ 315 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN-ELEKIMYHPFV---KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV-ERN-QP 315 (390)
T ss_dssp GGGCTTCSEEECCSS-CCCEEESGGGT---TCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCC-GGG-HH
T ss_pred HcCCCCccEEECCCC-cCCCcChhHcc---ccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceec-Ccc-cc
Confidence 456678888888775 34444333233 6778888888776 46667776677888888888876 46665 443 35
Q ss_pred hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
.+++|+.|++++| .++.+ .+..+++|++|+++++|
T Consensus 316 ~l~~L~~L~L~~N-~i~~~----------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 316 QFDRLENLYLDHN-SIVTL----------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHTTCSEEECCSS-CCCCC----------CCCTTCCCSEEECCSSC
T ss_pred ccCcCCEEECCCC-cccee----------CchhhccCCEEEcCCCC
Confidence 6788888888887 45444 23456778888887753
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=186.16 Aligned_cols=88 Identities=17% Similarity=0.013 Sum_probs=63.4
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
...+++|+.|+++++. ++.+....+. .+++|++|+++++......+..+..+++|++|+++++ +++.+ +...+.
T Consensus 244 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~ 317 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNP-ISTIEGSMLH---ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTL-EESVFH 317 (477)
T ss_dssp HTTCTTCCEEECCSSC-CCEECTTSCT---TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCC-CGGGBS
T ss_pred hcCccccCeeECCCCc-CCccChhhcc---ccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCcee-CHhHcC
Confidence 3456788888888763 5555544343 7788999999887544444566678889999999885 57776 555566
Q ss_pred hccccceEEEcccc
Q 046857 373 NLVNLGRMKIVDCK 386 (439)
Q Consensus 373 ~l~~L~~L~l~~c~ 386 (439)
.+++|+.|++++++
T Consensus 318 ~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 318 SVGNLETLILDSNP 331 (477)
T ss_dssp CGGGCCEEECCSSC
T ss_pred CCcccCEEEccCCC
Confidence 78889999888763
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.9e-20 Score=192.89 Aligned_cols=229 Identities=15% Similarity=0.134 Sum_probs=127.2
Q ss_pred CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857 153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF 232 (439)
Q Consensus 153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 232 (439)
++|+.|+++++ .++...+. .+..+++|++|+++++.....++. . .+..+ ++|+.|+++++.- ..+...
T Consensus 381 ~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~-~-------~~~~l-~~L~~L~Ls~n~l-~~~~~~ 448 (680)
T 1ziw_A 381 SPLHILNLTKN-KISKIESD-AFSWLGHLEVLDLGLNEIGQELTG-Q-------EWRGL-ENIFEIYLSYNKY-LQLTRN 448 (680)
T ss_dssp SCCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCEEECCS-G-------GGTTC-TTCCEEECCSCSE-EECCTT
T ss_pred CcCceEECCCC-CCCeEChh-hhhCCCCCCEEeCCCCcCccccCc-c-------cccCc-ccccEEecCCCCc-ceeChh
Confidence 34555555554 23333232 255566666666666532222211 0 01112 6677777776642 222111
Q ss_pred CCcccCCCCccEEeEecCCCccee-ccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCC
Q 046857 233 TGNIIEMPMLWSLTIENCPDMETF-ISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHK 309 (439)
Q Consensus 233 ~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 309 (439)
. ...+++|+.|++.++. +... ........+++|+.| +.+.+..+++ .....+++|+.|+++++ .
T Consensus 449 ~--~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~---------~~~~~l~~L~~L~Ls~N-~ 515 (680)
T 1ziw_A 449 S--FALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNNIANIND---------DMLEGLEKLEILDLQHN-N 515 (680)
T ss_dssp T--TTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT---------TTTTTCTTCCEEECCSS-C
T ss_pred h--hhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCCCCCcCCh---------hhhccccccCEEeCCCC-C
Confidence 1 1256777777776643 2211 011123456667766 4555555332 12345678888888875 3
Q ss_pred ceeccccCC-----ccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEc
Q 046857 310 VQHLWKEND-----ESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIV 383 (439)
Q Consensus 310 l~~l~~~~~-----~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~ 383 (439)
++.++...+ .....+++|+.|+++++ .++.+|.. +..+++|+.|++++ ++++.+ |...+..+++|+.|+++
T Consensus 516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l-~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 516 LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNLNTL-PASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECT
T ss_pred ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCCCcC-CHhHhCCCCCCCEEECC
Confidence 444432210 01126778888888876 45567654 56788888888876 467776 55555677888888888
Q ss_pred ccccchhhccccccccCCCce-EeccccEEecCCC
Q 046857 384 DCKMMEEIIQSQVGEETEDCI-VFGKLRYLELDCL 417 (439)
Q Consensus 384 ~c~~l~~~~~~~~~~~~~~~~-~l~~L~~l~l~~c 417 (439)
++ .++.+... .+. .+++|++++++++
T Consensus 593 ~N-~l~~~~~~-------~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 593 KN-LITSVEKK-------VFGPAFRNLTELDMRFN 619 (680)
T ss_dssp TS-CCCBCCHH-------HHHHHHTTCSEEECTTC
T ss_pred CC-cCCccChh-------HhcccccccCEEEccCC
Confidence 87 55555431 233 5678888888774
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.1e-20 Score=177.82 Aligned_cols=303 Identities=15% Similarity=0.151 Sum_probs=222.0
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
.+..+++|++|++.+|. +..++. +. .+++|++|+++++ ++.++ +.+..+++|++|++++| .++.+
T Consensus 39 ~~~~l~~L~~L~l~~~~-i~~~~~-~~--------~~~~L~~L~l~~n-~i~~~---~~~~~l~~L~~L~L~~n-~i~~~ 103 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK-VASIQG-IE--------YLTNLEYLNLNGN-QITDI---SPLSNLVKLTNLYIGTN-KITDI 103 (347)
T ss_dssp CHHHHTTCSEEECCSSC-CCCCTT-GG--------GCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCC
T ss_pred cchhcccccEEEEeCCc-cccchh-hh--------hcCCccEEEccCC-ccccc---hhhhcCCcCCEEEccCC-cccCc
Confidence 34578899999999986 444443 32 5899999999994 44444 33778999999999997 56667
Q ss_pred ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
+ .+..+++|++|+++++.+. .++. +..+++|++|+++++.....++. ...+++|++|++.+|.
T Consensus 104 ~-~~~~l~~L~~L~l~~n~i~----------~~~~-~~~l~~L~~L~l~~n~~~~~~~~-----~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 104 S-ALQNLTNLRELYLNEDNIS----------DISP-LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESK 166 (347)
T ss_dssp G-GGTTCTTCSEEECTTSCCC----------CCGG-GTTCTTCCEEECTTCTTCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred h-HHcCCCcCCEEECcCCccc----------Cchh-hccCCceeEEECCCCCCcccccc-----hhhCCCCcEEEecCCC
Confidence 5 4788999999999995533 2222 45689999999998876665433 1468999999999974
Q ss_pred ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccE
Q 046857 165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWS 244 (439)
Q Consensus 165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 244 (439)
+... +. +..+++|++|++++| .+..+..+. .+ ++|+.|++.++. +..+.. ...+++|+.
T Consensus 167 -~~~~-~~--~~~l~~L~~L~l~~n-~l~~~~~~~----------~l-~~L~~L~l~~n~-l~~~~~----~~~~~~L~~ 225 (347)
T 4fmz_A 167 -VKDV-TP--IANLTDLYSLSLNYN-QIEDISPLA----------SL-TSLHYFTAYVNQ-ITDITP----VANMTRLNS 225 (347)
T ss_dssp -CCCC-GG--GGGCTTCSEEECTTS-CCCCCGGGG----------GC-TTCCEEECCSSC-CCCCGG----GGGCTTCCE
T ss_pred -cCCc-hh--hccCCCCCEEEccCC-ccccccccc----------CC-CccceeecccCC-CCCCch----hhcCCcCCE
Confidence 5442 32 678999999999987 344433221 13 899999999874 433322 347899999
Q ss_pred EeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcccc
Q 046857 245 LTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNK 322 (439)
Q Consensus 245 L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 322 (439)
|++.+| .+...++ ...+++|+.| +.+.+..+ .....+++|+.|+++++ .++.+. .+ .
T Consensus 226 L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~l~~n-~l~~~~--~~---~ 284 (347)
T 4fmz_A 226 LKIGNN-KITDLSP---LANLSQLTWLEIGTNQISDI-----------NAVKDLTKLKMLNVGSN-QISDIS--VL---N 284 (347)
T ss_dssp EECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCCC-----------GGGTTCTTCCEEECCSS-CCCCCG--GG---G
T ss_pred EEccCC-ccCCCcc---hhcCCCCCEEECCCCccCCC-----------hhHhcCCCcCEEEccCC-ccCCCh--hh---c
Confidence 999996 4555443 4678888888 55555553 13567889999999987 455542 12 2
Q ss_pred ccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857 323 VFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 323 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c 385 (439)
.+++|++|++++|......+..+..+++|++|++++|+ ++.+.| ...+++|+.|++++|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhh
Confidence 78999999999996554555666789999999999975 777644 468899999999998
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=6.3e-20 Score=181.10 Aligned_cols=335 Identities=16% Similarity=0.069 Sum_probs=222.3
Q ss_pred CCCccccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT 83 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 83 (439)
.|+++++|++|++++|.....++. .+. .+++|++|+++++ ++.... ...+..+++|++|++++|..-..
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~--------~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFR--------GLSSLIILKLDYN-QFLQLE-TGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTT--------TCTTCCEEECTTC-TTCEEC-TTTTTTCTTCCEEECTTSCCBTH
T ss_pred HhccCccccEEECcCCcccceECccccc--------ccccCCEEeCCCC-ccCccC-hhhccCcccCCEEeCCCCCCCcc
Confidence 588999999999999986555543 333 5899999999994 233331 12367899999999999854333
Q ss_pred cccC--CcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEe
Q 046857 84 FSQG--IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEV 160 (439)
Q Consensus 84 l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l 160 (439)
++.. ++.+++|++|++++|.+.... |.. +..+++|++|+++++. +..+.... +......+|+.|++
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~~~L~~L~l 187 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNNIKKIQ---------PASFFLNMRRFHVLDLTFNK-VKSICEED-LLNFQGKHFTLLRL 187 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSBCCSCC---------CCGGGGGCTTCCEEECTTCC-BSCCCTTT-SGGGTTCEEEEEEC
T ss_pred ccCcccccCcccCCEEECCCCccCccC---------cccccCCCCcccEEeCCCCc-ccccChhh-hhcccccccccccc
Confidence 4544 888999999999996543221 222 4468999999999765 44332222 22112368899999
Q ss_pred ccccccccccchh-------HHhhccccceeeeccccccchhcc-ccccccccCcccccccccceEecCCcccccccc--
Q 046857 161 DYCTNMSSAIPAN-------LLRCLNNLARLEVRNCDSLEEMLH-LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC-- 230 (439)
Q Consensus 161 ~~~~~l~~~~~~~-------~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-- 230 (439)
.++. +.+..+.. .+..+++|++|+++++......+. +.... .. ++|+.|++.++.......
T Consensus 188 ~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-------~~-~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 188 SSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI-------AG-TKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT-------TT-CCEEEEECTTCTTTSCCTTC
T ss_pred ccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc-------cc-cceeeEeeccccccccccch
Confidence 8864 44322211 012457899999998754333221 11100 02 788888888764332211
Q ss_pred -------cCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccce
Q 046857 231 -------NFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRK 301 (439)
Q Consensus 231 -------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 301 (439)
.........++|+.+++.++ .+....+.. ...+++|++| +.+.+.++.+ .....+++|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~ 327 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKS-KIFALLKSV-FSHFTDLEQLTLAQNEINKIDD---------NAFWGLTHLLK 327 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSS-CCCEECTTT-TTTCTTCCEEECTTSCCCEECT---------TTTTTCTTCCE
T ss_pred hhhccCcccccccccccCceEEEecCc-cccccchhh-cccCCCCCEEECCCCcccccCh---------hHhcCcccCCE
Confidence 00101123468999999885 455554433 3577888888 6666766533 23456789999
Q ss_pred EeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEE
Q 046857 302 LRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMK 381 (439)
Q Consensus 302 L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~ 381 (439)
|+++++ .++.+....+. .+++|++|++++|..-...|..+..+++|++|+++++ +++.+ |...+..+++|+.|+
T Consensus 328 L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 328 LNLSQN-FLGSIDSRMFE---NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSV-PDGIFDRLTSLQKIW 401 (455)
T ss_dssp EECCSS-CCCEECGGGGT---TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEE
T ss_pred EECCCC-ccCCcChhHhc---CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccC-CHhHhccCCcccEEE
Confidence 999986 45655444333 7899999999998544444677889999999999985 68887 555567899999999
Q ss_pred Ecccc
Q 046857 382 IVDCK 386 (439)
Q Consensus 382 l~~c~ 386 (439)
+++++
T Consensus 402 l~~N~ 406 (455)
T 3v47_A 402 LHTNP 406 (455)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 99874
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1.9e-20 Score=194.21 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=89.8
Q ss_pred ccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-C
Q 046857 10 NSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-G 87 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~ 87 (439)
+++++|++++|. +..++. .+. .+++|++|+++++ .+..... ..+..+++|++|++++| .+..+|. .
T Consensus 25 ~~l~~L~Ls~n~-l~~~~~~~~~--------~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRLPAANFT--------RYSQLTSLDVGFN-TISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDKT 92 (680)
T ss_dssp TTCSEEECCSSC-CCCCCGGGGG--------GGTTCSEEECCSS-CCCCCCT-THHHHCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCCcEEECCCCC-CCCcCHHHHh--------CCCcCcEEECCCC-ccCccCH-HHHhcccCcCEEECCCC-ccCccChhh
Confidence 678888888875 444433 233 4678888888873 2332211 12456788888888875 5666665 4
Q ss_pred CcCccCccceeecCceeeecCcCchhhhhhh-hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccc
Q 046857 88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCY-EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNM 166 (439)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l 166 (439)
++.+++|++|+++++.+. .++ ..+.++++|++|+++++. +..+.... ...+++|++|+++++ .+
T Consensus 93 ~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l 157 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQ----------KIKNNPFVKQKNLITLDLSHNG-LSSTKLGT---QVQLENLQELLLSNN-KI 157 (680)
T ss_dssp TTTCTTCSEEECCSSCCC----------CCCSCTTTTCTTCCEEECCSSC-CSCCCCCS---SSCCTTCCEEECCSS-CC
T ss_pred hccCCCCCEEECCCCccC----------ccChhHccccCCCCEEECCCCc-ccccCchh---hcccccCCEEEccCC-cc
Confidence 777888888888774432 222 234467778888887654 33222211 135677777777775 34
Q ss_pred ccccchhHHh--hccccceeeeccc
Q 046857 167 SSAIPANLLR--CLNNLARLEVRNC 189 (439)
Q Consensus 167 ~~~~~~~~~~--~l~~L~~L~l~~~ 189 (439)
+...+ ..+. .+++|++|+++++
T Consensus 158 ~~~~~-~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 158 QALKS-EELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCBCH-HHHGGGTTCEESEEECTTC
T ss_pred cccCH-HHhhccccccccEEECCCC
Confidence 44322 2233 3467777777765
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.1e-19 Score=180.64 Aligned_cols=296 Identities=17% Similarity=0.149 Sum_probs=201.1
Q ss_pred cccCceEEEcccccccee-ccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 9 PNSLVNLNVSYCEKIEEI-IGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
.++++.|+|++|. +..+ +..+. .+++|++|+++++ .+..+.. ..+..+++|++|+++++ .++.+|..
T Consensus 31 ~~~l~~L~L~~n~-l~~~~~~~~~--------~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~ 98 (477)
T 2id5_A 31 PTETRLLDLGKNR-IKTLNQDEFA--------SFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLG 98 (477)
T ss_dssp CTTCSEEECCSSC-CCEECTTTTT--------TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred CCCCcEEECCCCc-cceECHhHcc--------CCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCC-cCCccCcc
Confidence 4678888988886 4444 33343 5789999999883 3333321 23667899999999986 56677654
Q ss_pred -CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccc
Q 046857 88 -IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNM 166 (439)
Q Consensus 88 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l 166 (439)
+..+++|++|++++|.+... .+..+..+++|++|+++++. +..+.... + ..+++|++|++.++ .+
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~--~~l~~L~~L~l~~n-~l 164 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVIL---------LDYMFQDLYNLKSLEVGDND-LVYISHRA-F--SGLNSLEQLTLEKC-NL 164 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEE---------CTTTTTTCTTCCEEEECCTT-CCEECTTS-S--TTCTTCCEEEEESC-CC
T ss_pred cccCCCCCCEEECCCCccccC---------ChhHccccccCCEEECCCCc-cceeChhh-c--cCCCCCCEEECCCC-cC
Confidence 57889999999988554322 12244568889999998665 54443322 2 36789999999887 56
Q ss_pred ccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEe
Q 046857 167 SSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLT 246 (439)
Q Consensus 167 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~ 246 (439)
+. ++...+..+++|+.|++.++. +..+.. ..+..+ ++|+.|+++++..+..++.... ...+|+.|+
T Consensus 165 ~~-~~~~~l~~l~~L~~L~l~~n~-i~~~~~--------~~~~~l-~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~ 230 (477)
T 2id5_A 165 TS-IPTEALSHLHGLIVLRLRHLN-INAIRD--------YSFKRL-YRLKVLEISHWPYLDTMTPNCL---YGLNLTSLS 230 (477)
T ss_dssp SS-CCHHHHTTCTTCCEEEEESCC-CCEECT--------TCSCSC-TTCCEEEEECCTTCCEECTTTT---TTCCCSEEE
T ss_pred cc-cChhHhcccCCCcEEeCCCCc-CcEeCh--------hhcccC-cccceeeCCCCccccccCcccc---cCccccEEE
Confidence 65 455558889999999998763 333221 112224 8899999998887777765543 456899999
Q ss_pred EecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCcccccc
Q 046857 247 IENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVF 324 (439)
Q Consensus 247 l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 324 (439)
+.++ .+..++.. ....+++|+.| +.+.+..+.+ .....+++|+.|+++++ .+..+....+. .+
T Consensus 231 l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l 295 (477)
T 2id5_A 231 ITHC-NLTAVPYL-AVRHLVYLRFLNLSYNPISTIEG---------SMLHELLRLQEIQLVGG-QLAVVEPYAFR---GL 295 (477)
T ss_dssp EESS-CCCSCCHH-HHTTCTTCCEEECCSSCCCEECT---------TSCTTCTTCCEEECCSS-CCSEECTTTBT---TC
T ss_pred CcCC-cccccCHH-HhcCccccCeeECCCCcCCccCh---------hhccccccCCEEECCCC-ccceECHHHhc---Cc
Confidence 9986 45554322 34577888887 6666666432 12446788999999886 45555444444 78
Q ss_pred CCcceEEeecCCCcccccCC-CccCCCcceEEEccCC
Q 046857 325 ANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCH 360 (439)
Q Consensus 325 ~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 360 (439)
++|++|+++++ .++.++.. +..+++|++|++++++
T Consensus 296 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 296 NYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 89999999887 45566543 4578899999998754
No 25
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.1e-20 Score=186.08 Aligned_cols=293 Identities=14% Similarity=0.109 Sum_probs=204.8
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
+++++++|++|++++|. +..++ .++ .+++|++|+++++ ++..+ + +..+++|++|++++| .++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~-l~~~~-~l~--------~l~~L~~L~Ls~n-~l~~~---~-~~~l~~L~~L~Ls~N-~l~~~ 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-ITDMT-GIE--------KLTGLTKLICTSN-NITTL---D-LSQNTNLTYLACDSN-KLTNL 100 (457)
T ss_dssp EHHHHTTCCEEECCSSC-CCCCT-TGG--------GCTTCSEEECCSS-CCSCC---C-CTTCTTCSEEECCSS-CCSCC
T ss_pred ChhHcCCCCEEEccCCC-cccCh-hhc--------ccCCCCEEEccCC-cCCeE---c-cccCCCCCEEECcCC-CCcee
Confidence 45678999999999985 45554 333 5889999999993 34443 2 678999999999996 46666
Q ss_pred ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
+ ++.+++|++|+++++.+.. ++ +..+++|++|+++++. +..++ ...+++|+.|+++++.
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~----------l~--~~~l~~L~~L~l~~N~-l~~l~------l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTK----------LD--VSQNPLLTYLNCARNT-LTEID------VSHNTQLTELDCHLNK 159 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC----------CC--CTTCTTCCEEECTTSC-CSCCC------CTTCTTCCEEECTTCS
T ss_pred e--cCCCCcCCEEECCCCcCCe----------ec--CCCCCcCCEEECCCCc-cceec------cccCCcCCEEECCCCC
Confidence 5 7889999999999855432 22 4568899999999765 54432 2468899999999986
Q ss_pred ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccE
Q 046857 165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWS 244 (439)
Q Consensus 165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 244 (439)
.+... + +..+++|++|+++++ .++.++ + ..+ ++|+.|+++++ .++.+ ....+++|+.
T Consensus 160 ~~~~~-~---~~~l~~L~~L~ls~n-~l~~l~-l----------~~l-~~L~~L~l~~N-~l~~~-----~l~~l~~L~~ 216 (457)
T 3bz5_A 160 KITKL-D---VTPQTQLTTLDCSFN-KITELD-V----------SQN-KLLNRLNCDTN-NITKL-----DLNQNIQLTF 216 (457)
T ss_dssp CCCCC-C---CTTCTTCCEEECCSS-CCCCCC-C----------TTC-TTCCEEECCSS-CCSCC-----CCTTCTTCSE
T ss_pred ccccc-c---cccCCcCCEEECCCC-ccceec-c----------ccC-CCCCEEECcCC-cCCee-----ccccCCCCCE
Confidence 66653 2 567899999999986 444432 1 123 88999999887 34444 2247789999
Q ss_pred EeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCcc----------ceEeecCCCCcee
Q 046857 245 LTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQL----------RKLRLSGLHKVQH 312 (439)
Q Consensus 245 L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L----------~~L~l~~~~~l~~ 312 (439)
|++.++ .+..++ ...+++|+.| +.+.+.+++ ...+++| +.++++++..++.
T Consensus 217 L~Ls~N-~l~~ip----~~~l~~L~~L~l~~N~l~~~~------------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 217 LDCSSN-KLTEID----VTPLTQLTYFDCSVNPLTELD------------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp EECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC------------CTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred EECcCC-cccccC----ccccCCCCEEEeeCCcCCCcC------------HHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 999885 455553 3577888887 556666532 2234444 4455555544444
Q ss_pred ccccCCccccccCCcceEEeecCCCcccccCC--------CccCCCcceEEEccCCCcccccChhHHhhccccceEEEcc
Q 046857 313 LWKENDESNKVFANLERLEISECSKLQKLVPP--------SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVD 384 (439)
Q Consensus 313 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--------~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~ 384 (439)
++.. .+++|+.|++++|+.++.+|.. +.++++|++|+++++ +++.+ + +..+++|+.|++++
T Consensus 280 ~~~~------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l-~---l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 280 FQAE------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL-D---VSHNTKLKSLSCVN 348 (457)
T ss_dssp EECT------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC-C---CTTCTTCSEEECCS
T ss_pred cccc------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc-c---cccCCcCcEEECCC
Confidence 4433 6789999999998877766632 345678888888874 57665 3 35788999999987
Q ss_pred c
Q 046857 385 C 385 (439)
Q Consensus 385 c 385 (439)
+
T Consensus 349 N 349 (457)
T 3bz5_A 349 A 349 (457)
T ss_dssp S
T ss_pred C
Confidence 6
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=3.4e-20 Score=186.23 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=111.4
Q ss_pred cCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCcee-c
Q 046857 237 IEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQH-L 313 (439)
Q Consensus 237 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l 313 (439)
..+++|+.|+++++ .+....+.. ...+++|+.| +.+.+.++.. .......+++|+.|+++++. +.. +
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~-------~~~~~~~l~~L~~L~Ls~N~-l~~~l 390 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMNQLKELSK-------IAEMTTQMKSLQQLDISQNS-VSYDE 390 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSSCCCBHHH-------HHHHHTTCTTCCEEECCSSC-CBCCG
T ss_pred hhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCCccCcccc-------chHHHhhCCCCCEEECCCCc-CCccc
Confidence 47799999999996 444433332 3578888888 5566654210 00124567899999999864 444 6
Q ss_pred cccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhcc
Q 046857 314 WKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQ 393 (439)
Q Consensus 314 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~ 393 (439)
+...+. .+++|++|++++|.....++..+. ++|++|++++| +++.+ |..+. .+++|+.|++++| .++.++.
T Consensus 391 ~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 391 KKGDCS---WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp GGCSCC---CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSS-CCCCCCT
T ss_pred ccchhc---cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCC-cCCccCH
Confidence 544333 678999999999875555555443 79999999986 58876 76554 8999999999998 6776654
Q ss_pred ccccccCCCceEeccccEEecCCCC
Q 046857 394 SQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 394 ~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
. .+..+++|++++++++|
T Consensus 462 ~-------~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 462 G-------IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp T-------TTTTCTTCCEEECCSSC
T ss_pred H-------HhccCCcccEEECcCCC
Confidence 2 36678999999998875
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=3.3e-20 Score=187.58 Aligned_cols=157 Identities=19% Similarity=0.275 Sum_probs=101.7
Q ss_pred cccCceEEEcccccccee-ccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-
Q 046857 9 PNSLVNLNVSYCEKIEEI-IGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ- 86 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~- 86 (439)
.++|++|++++|. +..+ +..+. .+++|++|+++++ ++...+. ..+..+++|++|++++| .+..++.
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~~~~--------~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~ 92 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHGDLR--------ACANLQVLILKSS-RINTIEG-DAFYSLGSLEHLDLSDN-HLSSLSSS 92 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSSTTS--------SCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCSCCHH
T ss_pred CCCccEEECcCCc-cCccChhhhh--------cCCcccEEECCCC-CcCccCh-hhccccccCCEEECCCC-ccCccCHH
Confidence 3678888888886 4444 34343 5788888888883 3333321 22667888888888886 4555444
Q ss_pred CCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccc
Q 046857 87 GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNM 166 (439)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l 166 (439)
.++.+++|++|++++|.+...+ .+..+..+++|++|+++++..+..++... + ..+++|++|++.++ .+
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~--~~l~~L~~L~L~~n-~l 160 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLG--------VTSLFPNLTNLQTLRIGNVETFSEIRRID-F--AGLTSLNELEIKAL-SL 160 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSC--------SSCSCTTCTTCCEEEEEESSSCCEECTTT-T--TTCCEEEEEEEEET-TC
T ss_pred HhccCCCCcEEECCCCcccccc--------hhhhhhccCCccEEECCCCccccccCHhh-h--hcccccCeeeccCC-cc
Confidence 3778888888888885433211 12334567788888888776566654322 1 35778888888776 35
Q ss_pred ccccchhHHhhccccceeeecccc
Q 046857 167 SSAIPANLLRCLNNLARLEVRNCD 190 (439)
Q Consensus 167 ~~~~~~~~~~~l~~L~~L~l~~~~ 190 (439)
+...|.. +..+++|++|++.++.
T Consensus 161 ~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 161 RNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CEECTTT-TTTCSEEEEEEEECSB
T ss_pred cccChhh-hhccccCceEecccCc
Confidence 5444544 6667777777777653
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.3e-19 Score=184.81 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=64.5
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
...+++|+.|+++++. +..+....+. .+++|++|+++++ .++.+|.....+++|+.|++++| .++.+ |.. +.
T Consensus 250 l~~l~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i-~~~-~~ 321 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNE-LEKIMYHPFV---KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV-ERN-QP 321 (597)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESGGGT---TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCC-GGG-HH
T ss_pred hccCCCCCEEECCCCc-cCCCCHHHhc---CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCcc-Ccc-cc
Confidence 4456677777777653 4433322222 5677777777765 45556666666777777777765 35554 443 35
Q ss_pred hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
.+++|+.|++++| .+..+ .+..+++|++|+++++|
T Consensus 322 ~l~~L~~L~L~~N-~l~~~----------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHN-SIVTL----------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSS-CCCCC----------CCCTTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCC-CCCCc----------ChhhcCCCCEEEeeCCC
Confidence 6677777777776 34333 23445677777776654
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=5.8e-19 Score=187.18 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=112.2
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
..++|++|+|++|...+..+..+. .+++|++|+++++.....++. ..+..+++|++|++++|..-...|..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~--------~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFP--------FLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCS--------SCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcCCccChhHCc--------ccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCcCcccCHhH
Confidence 468899999999874333344444 688999999999644444422 23678999999999997544345888
Q ss_pred CcCccCccceeecCceeeecCcCchhhhhhhhh--hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccc
Q 046857 88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE--MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
++.+++|++|++++|.+.. .++.. +..+++|++|+++++. +..+.... ....+++|++|+++++ .
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~--~~~~L~~L~~L~Ls~N-~ 159 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSD---------AVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHP--SFGKLNSLKSIDFSSN-Q 159 (844)
T ss_dssp SCSCSSCCCEECTTCCCSS---------CCSTTCCCSSCSSCCEEEEESCC-CCCCCCCG--GGGTCSSCCEEEEESS-C
T ss_pred ccCCcccCEeeCcCCCCCc---------ccccCccccccCCCCEEECCCCc-ccccccch--hHhhCCCCCEEECCCC-c
Confidence 9999999999999854331 12222 5578999999999765 33322110 0246899999999886 4
Q ss_pred cccccchhHHhhc--cccceeeeccccc
Q 046857 166 MSSAIPANLLRCL--NNLARLEVRNCDS 191 (439)
Q Consensus 166 l~~~~~~~~~~~l--~~L~~L~l~~~~~ 191 (439)
++...+.. +..+ ++|+.|+++++..
T Consensus 160 i~~~~~~~-l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 160 IFLVCEHE-LEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCCCSGG-GHHHHHCSSCCCEECCSBS
T ss_pred CCeeCHHH-cccccCCccceEECCCCcc
Confidence 55544544 5555 8899999998743
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=4.8e-19 Score=187.82 Aligned_cols=290 Identities=11% Similarity=0.057 Sum_probs=165.7
Q ss_pred CCCCccccCceEEEcccccccee-ccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc
Q 046857 4 GSVGIPNSLVNLNVSYCEKIEEI-IGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK 82 (439)
Q Consensus 4 ~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 82 (439)
.+|+++++|++|+|++|..+..+ +..+. .+++|++|+++++ ++.... ...+..+++|++|++++|..-.
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--------~L~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFR--------NLPNLRILDLGSS-KIYFLH-PDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTS--------SCTTCCEEECTTC-CCCEEC-TTSSCSCSSCCCEECTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhc--------CCCCCCEEECCCC-cCcccC-HhHccCCcccCEeeCcCCCCCc
Confidence 35889999999999999777777 44444 5889999999983 333331 2336789999999999975443
Q ss_pred ccccC--CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCcc--CCccEE
Q 046857 83 TFSQG--IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFF--NYLAEL 158 (439)
Q Consensus 83 ~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~--~~L~~L 158 (439)
.+|.. ++.+++|++|++++|.+.... .+..+..+++|++|+++++. +..+.... + ..+ ++|+.|
T Consensus 112 ~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~-l--~~l~~~~L~~L 179 (844)
T 3j0a_A 112 AVLKDGYFRNLKALTRLDLSKNQIRSLY--------LHPSFGKLNSLKSIDFSSNQ-IFLVCEHE-L--EPLQGKTLSFF 179 (844)
T ss_dssp CCSTTCCCSSCSSCCEEEEESCCCCCCC--------CCGGGGTCSSCCEEEEESSC-CCCCCSGG-G--HHHHHCSSCCC
T ss_pred ccccCccccccCCCCEEECCCCcccccc--------cchhHhhCCCCCEEECCCCc-CCeeCHHH-c--ccccCCccceE
Confidence 45554 788999999999985543211 11345578999999998765 33221111 1 122 677888
Q ss_pred EeccccccccccchhHHhhcc------ccceeeeccccccchhcc-ccc-------------------------ccc-cc
Q 046857 159 EVDYCTNMSSAIPANLLRCLN------NLARLEVRNCDSLEEMLH-LEE-------------------------LNA-DK 205 (439)
Q Consensus 159 ~l~~~~~l~~~~~~~~~~~l~------~L~~L~l~~~~~l~~~~~-~~~-------------------------~~~-~~ 205 (439)
++.++. +....+.. +..+. +|++|+++++......+. +.. ... ..
T Consensus 180 ~L~~n~-l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 180 SLAANS-LYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp EECCSB-SCCCCCCC-CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred ECCCCc-cccccccc-hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 887763 33333332 22222 377888876632111110 000 000 00
Q ss_pred Cccccc-ccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeee
Q 046857 206 EHIGPL-FPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLL 282 (439)
Q Consensus 206 ~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~ 282 (439)
..+..+ .++|+.|+++++.-....+... ..+++|+.|++.++ .+..+.+.. ...+++|+.| +.+.+..+.+
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~- 331 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVF---ETLKDLKVLNLAYN-KINKIADEA-FYGLDNLQVLNLSYNLLGELYS- 331 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCS---SSCCCCCEEEEESC-CCCEECTTT-TTTCSSCCEEEEESCCCSCCCS-
T ss_pred hhhhccccCCccEEECCCCcccccChhhh---hcCCCCCEEECCCC-cCCCCChHH-hcCCCCCCEEECCCCCCCccCH-
Confidence 000000 1578888887764322222222 36778888888874 455554433 3466777777 4455544322
Q ss_pred ccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecC
Q 046857 283 AHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISEC 335 (439)
Q Consensus 283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c 335 (439)
.....+++|+.|+++++ .++.+....+. .+++|++|+++++
T Consensus 332 --------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 332 --------SNFYGLPKVAYIDLQKN-HIAIIQDQTFK---FLEKLQTLDLRDN 372 (844)
T ss_dssp --------CSCSSCTTCCEEECCSC-CCCCCCSSCSC---SCCCCCEEEEETC
T ss_pred --------HHhcCCCCCCEEECCCC-CCCccChhhhc---CCCCCCEEECCCC
Confidence 12335566777776664 34444333222 4556666666554
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=9.2e-20 Score=183.09 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=70.6
Q ss_pred ccccCccceEeecCCCCceeccc--cCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChh
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWK--ENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLS 369 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~ 369 (439)
...+++|+.|+++++. +..+.. ..+. .+++|++|+++++.....+|.. ...+++|++|++++|. ++..+|..
T Consensus 344 ~~~l~~L~~L~L~~N~-l~~l~~~~~~~~---~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 418 (520)
T 2z7x_B 344 CGHLTELETLILQMNQ-LKELSKIAEMTT---QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRC 418 (520)
T ss_dssp CCCCSSCCEEECCSSC-CCBHHHHHHHHT---TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGS
T ss_pred hccCCCCCEEEccCCc-cCccccchHHHh---hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhh
Confidence 3466788888887753 443211 1111 6778888888887544446654 5577888888888764 54332332
Q ss_pred HHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857 370 ASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL 417 (439)
Q Consensus 370 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c 417 (439)
+ .++|+.|++++| .++.++. .+..+++|++|+++++
T Consensus 419 l---~~~L~~L~Ls~N-~l~~ip~--------~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 419 L---PPRIKVLDLHSN-KIKSIPK--------QVVKLEALQELNVASN 454 (520)
T ss_dssp C---CTTCCEEECCSS-CCCCCCG--------GGGGCTTCCEEECCSS
T ss_pred h---cccCCEEECCCC-cccccch--------hhhcCCCCCEEECCCC
Confidence 1 168888888888 6666654 4557889999998876
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=2.8e-19 Score=181.22 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=65.7
Q ss_pred cccCccceEeecCCCCcee-ccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857 294 VAFPQLRKLRLSGLHKVQH-LWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 294 ~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
..+++|+.|+++++. +.. ++...+. .+++|++|+++++..-..++..+. ++|++|+++++ +++.+ |..+.
T Consensus 400 ~~l~~L~~L~l~~N~-l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~i-p~~~~- 470 (562)
T 3a79_B 400 KNMSSLETLDVSLNS-LNSHAYDRTCA---WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSI-PKDVT- 470 (562)
T ss_dssp TTCTTCCEEECTTSC-CBSCCSSCCCC---CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCC-CTTTT-
T ss_pred cCCCCCCEEECCCCc-CCCccChhhhc---CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCccc-Chhhc-
Confidence 345666666666643 332 3333222 556777777776654334443322 57788888775 57765 55444
Q ss_pred hccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 373 NLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
.+++|+.|+++++ .++.++.. .+..+++|++++++++|
T Consensus 471 ~l~~L~~L~L~~N-~l~~l~~~-------~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 471 HLQALQELNVASN-QLKSVPDG-------VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SSCCCSEEECCSS-CCCCCCTT-------STTTCTTCCCEECCSCC
T ss_pred CCCCCCEEECCCC-CCCCCCHH-------HHhcCCCCCEEEecCCC
Confidence 7788888888877 56655532 25667788888887764
No 33
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.1e-21 Score=200.33 Aligned_cols=172 Identities=13% Similarity=0.116 Sum_probs=89.9
Q ss_pred CccccCceEEEccccccceec---ccccccc----ccccccccccceeeccccccccccccccCccCCCCccEEeeccCC
Q 046857 7 GIPNSLVNLNVSYCEKIEEII---GHVGEEV----KENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCP 79 (439)
Q Consensus 7 ~~~~~L~~L~l~~c~~~~~~~---~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 79 (439)
..+++|++|++++|..+.... ...+... ..-...+++|++|+++++. +.+.........+++|++|++.+|.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 467888889998887654331 1110000 0001146788888888753 2221111111247788888888876
Q ss_pred Cccc--cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC-CceeecCCCCCCcCccCCcc
Q 046857 80 NMKT--FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP-RLKEIWHGQALPVRFFNYLA 156 (439)
Q Consensus 80 ~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~l~~i~~~~~l~~~~~~~L~ 156 (439)
.+.. ++..+..+++|++|++++|.+...+. .. ++.....+++|++|+++++. .+..-.... +. ..+++|+
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~-l~-~~~~~L~ 214 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSG--HW---LSHFPDTYTSLVSLNISCLASEVSFSALER-LV-TRCPNLK 214 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCG--GG---GGGSCTTCCCCCEEECTTCCSCCCHHHHHH-HH-HHCTTCC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcch--HH---HHHHhhcCCcCcEEEecccCCcCCHHHHHH-HH-HhCCCCc
Confidence 5553 44444567788888887766432220 11 22222256677777777654 111000000 00 1357777
Q ss_pred EEEeccccccccccchhHHhhccccceeeecc
Q 046857 157 ELEVDYCTNMSSAIPANLLRCLNNLARLEVRN 188 (439)
Q Consensus 157 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 188 (439)
+|++.+|..++. ++. .+..+++|++|++..
T Consensus 215 ~L~L~~~~~~~~-l~~-~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 215 SLKLNRAVPLEK-LAT-LLQRAPQLEELGTGG 244 (594)
T ss_dssp EEECCTTSCHHH-HHH-HHHHCTTCSEEECSB
T ss_pred EEecCCCCcHHH-HHH-HHhcCCcceEccccc
Confidence 777777655544 333 255666666666543
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=4.4e-19 Score=174.65 Aligned_cols=298 Identities=12% Similarity=0.103 Sum_probs=208.0
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.+++|++|+++++ .+..+ +.+..+++|++|++++| .++.+| ++.+++|++|++++|.+.. ++
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~----------~~- 101 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM---TGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTN----------LD- 101 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC---TTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSC----------CC-
T ss_pred HcCCCCEEEccCC-CcccC---hhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCce----------ee-
Confidence 5899999999993 44444 45788999999999997 577775 7889999999999955332 22
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
+..+++|++|+++++. +..++ ...+++|++|+++++ .++.. + +..+++|++|++++|..+..+ .+
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~------~~~l~~L~~L~l~~N-~l~~l-~---l~~l~~L~~L~l~~n~~~~~~-~~- 166 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD------VSQNPLLTYLNCARN-TLTEI-D---VSHNTQLTELDCHLNKKITKL-DV- 166 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC------CTTCTTCCEEECTTS-CCSCC-C---CTTCTTCCEEECTTCSCCCCC-CC-
T ss_pred -cCCCCcCCEEECCCCc-CCeec------CCCCCcCCEEECCCC-cccee-c---cccCCcCCEEECCCCCccccc-cc-
Confidence 4568999999999774 55543 246899999999987 56653 3 667899999999998766554 11
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcc
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLE 277 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~ 277 (439)
..+ ++|+.|+++++ .++.++ ...+++|+.|++.++ .+..++ ...+++|+.| +.+.+.
T Consensus 167 ---------~~l-~~L~~L~ls~n-~l~~l~-----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 167 ---------TPQ-TQLTTLDCSFN-KITELD-----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp ---------TTC-TTCCEEECCSS-CCCCCC-----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCS
T ss_pred ---------ccC-CcCCEEECCCC-ccceec-----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCccc
Confidence 124 89999999987 455553 347899999999986 455542 3577888888 666676
Q ss_pred eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCC----------cceEEeecCCCcccccCCCcc
Q 046857 278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFAN----------LERLEISECSKLQKLVPPSWH 347 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~----------L~~L~l~~c~~l~~l~~~~~~ 347 (439)
++ +...+++|+.|+++++ .++.++.. .+++ |+.|++++|.....+| ...
T Consensus 226 ~i------------p~~~l~~L~~L~l~~N-~l~~~~~~------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 226 EI------------DVTPLTQLTYFDCSVN-PLTELDVS------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp CC------------CCTTCTTCSEEECCSS-CCSCCCCT------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTT
T ss_pred cc------------CccccCCCCEEEeeCC-cCCCcCHH------HCCCCCEEeccCCCCCEEECCCCccCCccc--ccc
Confidence 63 2457789999999986 45555544 4444 4555666666666666 357
Q ss_pred CCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857 348 LENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL 417 (439)
Q Consensus 348 l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c 417 (439)
+++|+.|++++|+.++.+ |. ..++|+.|++++|+.++.+..+.-.=....+.++++|+.|+++++
T Consensus 285 l~~L~~L~Ls~n~~l~~l-~~----~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLL-DC----QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCCCCCTTCTTCCEE-EC----TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred cccCCEEECCCCccccee-cc----CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCC
Confidence 899999999999877765 43 234555555555555555443210000013556777788777653
No 35
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=2.4e-21 Score=197.80 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=21.3
Q ss_pred ccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857 151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD 190 (439)
Q Consensus 151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 190 (439)
.+++|+.|.+.++. ...++. .+..+++|++|++++|.
T Consensus 268 ~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG--PNEMPI-LFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCTTCCEEEETTCC--TTTGGG-GGGGGGGCCEEEETTCC
T ss_pred ccccccccCccccc--hhHHHH-HHhhcCCCcEEecCCCc
Confidence 45566666665532 111333 25667778888887775
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=9.3e-19 Score=177.41 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=101.9
Q ss_pred cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceecc-ccccccccCCCCC--CccCcce-eeeecccccc
Q 046857 213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS-NSVVHVTTDNKEP--QKLTLEE-YFLLAHQVQP 288 (439)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L--~~~~l~~-~~~~~~~~~~ 288 (439)
++|++|+++++.-.+..+... ..+++|+.|++.++ .+..++. ......+++|+.| +.+.+.. ++.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------- 421 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGC---STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD------- 421 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTC---CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-------
T ss_pred CCceEEECCCCccccchhhhh---cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-------
Confidence 677777777764333233322 36778888888774 4444322 1223566777777 5555554 211
Q ss_pred ccccccccCccceEeecCCCCceeccccCCcccccc-CCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccC
Q 046857 289 LFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVF-ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLT 367 (439)
Q Consensus 289 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p 367 (439)
.....+++|+.|+++++. +...... .+ ++|++|+++++ .++.+|..+..+++|++|+++++ +++.+ |
T Consensus 422 --~~~~~l~~L~~L~l~~n~-l~~~~~~------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l-~ 489 (562)
T 3a79_B 422 --RTCAWAESILVLNLSSNM-LTGSVFR------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSV-P 489 (562)
T ss_dssp --CCCCCCTTCCEEECCSSC-CCGGGGS------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCC-C
T ss_pred --hhhcCcccCCEEECCCCC-CCcchhh------hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCC-C
Confidence 113456899999999874 3322222 34 69999999998 67899998889999999999985 68876 6
Q ss_pred hhHHhhccccceEEEcccc
Q 046857 368 LSASKNLVNLGRMKIVDCK 386 (439)
Q Consensus 368 ~~~~~~l~~L~~L~l~~c~ 386 (439)
...+..+++|+.|++++++
T Consensus 490 ~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTSTTTCTTCCCEECCSCC
T ss_pred HHHHhcCCCCCEEEecCCC
Confidence 6556788999999999874
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=2.2e-18 Score=166.62 Aligned_cols=285 Identities=14% Similarity=0.132 Sum_probs=180.4
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCCcCccCccceeecCceeeecCcCchhhhhh-
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC- 117 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l- 117 (439)
.++++++|+++++ .+..++.. .+..+++|++|+++++ .+..++ ..++.+++|++|+++++.+. .+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~-~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAA-LLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR----------YLP 109 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTH-HHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC----------CCC
T ss_pred ccCCceEEEecCC-chhhCChh-HhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCC----------cCC
Confidence 4677888888772 34444321 1356788888888876 355444 36677788888888774322 22
Q ss_pred hhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcc
Q 046857 118 YEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH 197 (439)
Q Consensus 118 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 197 (439)
+..+..+++|++|+++++. +..++... ...+++|++|+++++ .++.. +...+..+++|++|+++++. +..+.
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~- 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQNLQLSSNR-LTHVD- 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCBC-CTTTTSSCTTCCEEECCSSC-CSBCC-
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHH---hcCCCCCcEEECCCC-ccCcc-ChhhccCCCCCCEEECCCCc-CCccc-
Confidence 2234457777788877654 54444332 124677777877775 34443 33336667777777777653 32221
Q ss_pred ccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcc
Q 046857 198 LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLE 277 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~ 277 (439)
. . .+++|+.|+++++ .+..+ ...++|+.|++.++ .+..++
T Consensus 182 ---~-------~-~l~~L~~L~l~~n-~l~~~-------~~~~~L~~L~l~~n-~l~~~~-------------------- 221 (390)
T 3o6n_A 182 ---L-------S-LIPSLFHANVSYN-LLSTL-------AIPIAVEELDASHN-SINVVR-------------------- 221 (390)
T ss_dssp ---G-------G-GCTTCSEEECCSS-CCSEE-------ECCSSCSEEECCSS-CCCEEE--------------------
T ss_pred ---c-------c-cccccceeecccc-ccccc-------CCCCcceEEECCCC-eeeecc--------------------
Confidence 0 1 1367777777665 22222 12346677777664 232221
Q ss_pred eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEc
Q 046857 278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS 357 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 357 (439)
...+++|+.|+++++. ++.. ..+ ..+++|++|+++++..-...+..+..+++|++|+++
T Consensus 222 ---------------~~~~~~L~~L~l~~n~-l~~~--~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 222 ---------------GPVNVELTILKLQHNN-LTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp ---------------CCCCSSCCEEECCSSC-CCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred ---------------ccccccccEEECCCCC-Cccc--HHH---cCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 2245789999998863 4433 112 278999999999986444456677889999999999
Q ss_pred cCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 358 KCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 358 ~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
++ +++.+ +.. ...+++|+.|++++| .++.++. .+..+++|++|++++++
T Consensus 281 ~n-~l~~~-~~~-~~~l~~L~~L~L~~n-~l~~~~~--------~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 281 NN-RLVAL-NLY-GQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SS-CCCEE-ECS-SSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSSC
T ss_pred CC-cCccc-Ccc-cCCCCCCCEEECCCC-cceecCc--------cccccCcCCEEECCCCc
Confidence 85 57776 432 357899999999999 6666654 45678899999988764
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.3e-17 Score=171.33 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=81.7
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccc-cCCCccCCCcceEEEccCCCcccccChhHH
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKL-VPPSWHLENLWGLQVSKCHGLINVLTLSAS 371 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~ 371 (439)
...+++++.|+++++.....+..+.+. .+++|++|++++|. ++.+ |..+.++++|++|+++++ +++.+.+. .+
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~---~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~-~~ 538 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF-PY 538 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCBCCCG-GG
T ss_pred cccchhhhhhhhhhcccccccCchhhh---hccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCCC-cCCCCChh-HH
Confidence 345678999999887655544333343 78899999999984 5555 556778999999999985 68887444 46
Q ss_pred hhccccceEEEcccccchhhccccccccCCCceEe-ccccEEecCC
Q 046857 372 KNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVF-GKLRYLELDC 416 (439)
Q Consensus 372 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l-~~L~~l~l~~ 416 (439)
..+++|+.|+++++ .+..+... .+.++ ++|++|++++
T Consensus 539 ~~l~~L~~L~Ls~N-~l~~~~~~-------~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 539 KCLNSLQVLDYSLN-HIMTSKKQ-------ELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCCSS-------CTTCCCTTCCEEECTT
T ss_pred hCCCCCCEEECCCC-cCCCCCHH-------HHHhhhCcCCEEEeeC
Confidence 78899999999998 66655432 55566 5899999976
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=7e-18 Score=159.37 Aligned_cols=290 Identities=14% Similarity=0.114 Sum_probs=176.3
Q ss_pred ccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857 43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121 (439)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 121 (439)
+++.++++++ ++..++.. -.++|+.|+++++. +..+ |..+..+++|++|+++++.+... .+..+
T Consensus 34 ~l~~l~~~~~-~l~~ip~~----~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKE----ISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKI---------HEKAF 98 (332)
T ss_dssp ETTEEECCSS-CCSSCCSC----CCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE---------CGGGS
T ss_pred cCCEEECCCC-CccccCCC----CCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCcc---------CHhHh
Confidence 6788888772 34444322 24788899998864 5555 45678888899999888443311 13455
Q ss_pred cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhc-cccc
Q 046857 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEML-HLEE 200 (439)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~ 200 (439)
..+++|++|+++++. +..++.. .+++|++|+++++ .++. ++...+..+++|++|+++++. ++... ....
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~------~~~~L~~L~l~~n-~i~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 168 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPN------LPSSLVELRIHDN-RIRK-VPKGVFSGLRNMNCIEMGGNP-LENSGFEPGA 168 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSS------CCTTCCEEECCSS-CCCC-CCSGGGSSCSSCCEEECCSCC-CBGGGSCTTS
T ss_pred hCcCCCCEEECCCCc-CCccCcc------ccccCCEEECCCC-ccCc-cCHhHhCCCccCCEEECCCCc-cccCCCCccc
Confidence 678889999998664 5554433 3478999999886 4554 454557788999999998764 32210 0011
Q ss_pred cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceee
Q 046857 201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYF 280 (439)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~ 280 (439)
+. . .+|+.|+++++ .++.++... .++|+.|++.++ .+...++.
T Consensus 169 ~~--------~-l~L~~L~l~~n-~l~~l~~~~-----~~~L~~L~l~~n-~i~~~~~~--------------------- 211 (332)
T 2ft3_A 169 FD--------G-LKLNYLRISEA-KLTGIPKDL-----PETLNELHLDHN-KIQAIELE--------------------- 211 (332)
T ss_dssp SC--------S-CCCSCCBCCSS-BCSSCCSSS-----CSSCSCCBCCSS-CCCCCCTT---------------------
T ss_pred cc--------C-CccCEEECcCC-CCCccCccc-----cCCCCEEECCCC-cCCccCHH---------------------
Confidence 11 1 27888888876 344444322 267888887774 34333222
Q ss_pred eeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCC
Q 046857 281 LLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCH 360 (439)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 360 (439)
....+++|+.|+++++ .++.+....+. .+++|++|+++++ .++.+|..+..+++|++|+++++
T Consensus 212 -----------~l~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N- 274 (332)
T 2ft3_A 212 -----------DLLRYSKLYRLGLGHN-QIRMIENGSLS---FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN- 274 (332)
T ss_dssp -----------SSTTCTTCSCCBCCSS-CCCCCCTTGGG---GCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-
T ss_pred -----------HhcCCCCCCEEECCCC-cCCcCChhHhh---CCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-
Confidence 1334567777777764 34444333232 6778888888876 46677777778888888888874
Q ss_pred CcccccChhHHhh-----ccccceEEEcccccch-hhccccccccCCCceEeccccEEecCCCC
Q 046857 361 GLINVLTLSASKN-----LVNLGRMKIVDCKMME-EIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 361 ~l~~l~p~~~~~~-----l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
+++.+.+..+... .++|+.|++.+++... .+.. ..+..+++|+.++++++.
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-------~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-------ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-------GGGTTBCCSTTEEC----
T ss_pred CCCccChhHccccccccccccccceEeecCcccccccCc-------ccccccchhhhhhccccc
Confidence 5776633322211 3567888888774221 1211 145567777777777653
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=5.5e-18 Score=166.69 Aligned_cols=339 Identities=18% Similarity=0.140 Sum_probs=148.3
Q ss_pred CCCccccCceEEEccccccceecccccccccc-----ccccccccceeeccccccccccccccCccCCCCccEEeeccCC
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKE-----NRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCP 79 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~ 79 (439)
+++++++|++|++++|...+.+|..++....- ......++++|+++++ ++..++. ..++|++|+++++
T Consensus 29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~-----~~~~L~~L~l~~n- 101 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE-----LPPHLESLVASCN- 101 (454)
T ss_dssp -----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS-----CCTTCSEEECCSS-
T ss_pred hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC-----CcCCCCEEEccCC-
Confidence 36667777777777776555555554421100 0000012344555542 1222211 1245555555553
Q ss_pred CccccccCCcCccCccceeecCceeeecCcC----------chhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCc
Q 046857 80 NMKTFSQGIVSTPKLHEVQEEGELCRWEGNL----------NSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPV 149 (439)
Q Consensus 80 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~ 149 (439)
.++.+|.. .++|++|+++++.+...... ++.+..+| .+..+++|++|+++++. +..++.
T Consensus 102 ~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~------ 170 (454)
T 1jl5_A 102 SLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD------ 170 (454)
T ss_dssp CCSSCCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCC------
T ss_pred cCCccccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCC------
Confidence 33334432 24444444444332211100 01222233 34456666666666543 333221
Q ss_pred CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc
Q 046857 150 RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF 229 (439)
Q Consensus 150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 229 (439)
..++|++|+++++ .++. +| . +..+++|++|++++|. +..++. ..++|++|+++++ .++.+
T Consensus 171 -~~~~L~~L~L~~n-~l~~-l~-~-~~~l~~L~~L~l~~N~-l~~l~~-------------~~~~L~~L~l~~n-~l~~l 230 (454)
T 1jl5_A 171 -LPPSLEFIAAGNN-QLEE-LP-E-LQNLPFLTAIYADNNS-LKKLPD-------------LPLSLESIVAGNN-ILEEL 230 (454)
T ss_dssp -CCTTCCEEECCSS-CCSS-CC-C-CTTCTTCCEEECCSSC-CSSCCC-------------CCTTCCEEECCSS-CCSSC
T ss_pred -CcccccEEECcCC-cCCc-Cc-c-ccCCCCCCEEECCCCc-CCcCCC-------------CcCcccEEECcCC-cCCcc
Confidence 2346677776665 3443 34 2 5666677777776652 222211 1246666776665 34444
Q ss_pred ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeee---------ccccccccccccccCc
Q 046857 230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLL---------AHQVQPLFDEKVAFPQ 298 (439)
Q Consensus 230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~---------~~~~~~~~~~~~~~~~ 298 (439)
+. . ..+++|+.|++.++ .+..++. .+++|+.| +.+.+.+++.. ........ ...+++
T Consensus 231 p~-~---~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l--~~~~~~ 298 (454)
T 1jl5_A 231 PE-L---QNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL--SELPPN 298 (454)
T ss_dssp CC-C---TTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE--SCCCTT
T ss_pred cc-c---CCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCCcccccCcccCcCCEEECcCCccCcc--cCcCCc
Confidence 42 2 25666777777664 3333321 22455554 33333332110 00000000 011234
Q ss_pred cceEeecCCCCceeccccCCcccccc-CCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhcccc
Q 046857 299 LRKLRLSGLHKVQHLWKENDESNKVF-ANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNL 377 (439)
Q Consensus 299 L~~L~l~~~~~l~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L 377 (439)
|+.|+++++ .+..+. .+ ++|++|+++++ .++.+|.. +++|++|++++| +++.+ |. .+++|
T Consensus 299 L~~L~l~~N-~l~~i~--------~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~l~~l-p~----~l~~L 359 (454)
T 1jl5_A 299 LYYLNASSN-EIRSLC--------DLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEV-PE----LPQNL 359 (454)
T ss_dssp CCEEECCSS-CCSEEC--------CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCC-CC----CCTTC
T ss_pred CCEEECcCC-cCCccc--------CCcCcCCEEECCCC-cccccccc---CCcCCEEECCCC-ccccc-cc----hhhhc
Confidence 555555443 222211 22 47788888775 34455543 578888888875 46665 54 36788
Q ss_pred ceEEEcccccchhhccccccccCCCceEe-------------ccccEEecCCCC
Q 046857 378 GRMKIVDCKMMEEIIQSQVGEETEDCIVF-------------GKLRYLELDCLP 418 (439)
Q Consensus 378 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~l-------------~~L~~l~l~~c~ 418 (439)
+.|+++++ .+..++. .+..+..+ ++|++|++++++
T Consensus 360 ~~L~L~~N-~l~~l~~-----ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 360 KQLHVEYN-PLREFPD-----IPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CEEECCSS-CCSSCCC-----CCTTCCEEECCC---------------------
T ss_pred cEEECCCC-CCCcCCC-----ChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 88888887 4433211 00133333 678888877754
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1e-17 Score=170.90 Aligned_cols=285 Identities=14% Similarity=0.128 Sum_probs=183.2
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY 118 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 118 (439)
.+++++.|+++++ .+..++.. .+..+++|++|++++|. +..++ ..++.+++|++|++++|.+. .++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIR----------YLP 115 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTH-HHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCC----------CCC
T ss_pred cCCCceEEEeeCC-CCCCcCHH-HHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCC----------CCC
Confidence 4667778887772 33333221 13457888888888864 55444 46777888888888774322 222
Q ss_pred -hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcc
Q 046857 119 -EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH 197 (439)
Q Consensus 119 -~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 197 (439)
..+..+++|+.|+++++. +..++... ...+++|+.|+++++ .++...| ..+..+++|++|+++++. +..++
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~- 187 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSNR-LTHVD- 187 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECTTSC-CSBCC-
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHH---hccCCCCCEEEeeCC-cCCCCCh-hhhhcCCcCcEEECcCCC-CCCcC-
Confidence 224467778888887654 54444332 135777888888776 4555333 336777888888887653 32221
Q ss_pred ccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcc
Q 046857 198 LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLE 277 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~ 277 (439)
+ . .+++|+.|+++++ .+..+ ...++|+.|++.++ .+..++
T Consensus 188 ~----------~-~l~~L~~L~l~~n-~l~~l-------~~~~~L~~L~ls~n-~l~~~~-------------------- 227 (597)
T 3oja_B 188 L----------S-LIPSLFHANVSYN-LLSTL-------AIPIAVEELDASHN-SINVVR-------------------- 227 (597)
T ss_dssp G----------G-GCTTCSEEECCSS-CCSEE-------ECCTTCSEEECCSS-CCCEEE--------------------
T ss_pred h----------h-hhhhhhhhhcccC-ccccc-------cCCchhheeeccCC-cccccc--------------------
Confidence 0 1 1377777777765 23222 13356777777664 233221
Q ss_pred eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEc
Q 046857 278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS 357 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 357 (439)
...+++|+.|+++++. +... ..+ ..+++|++|+++++..-...|..+..+++|++|+++
T Consensus 228 ---------------~~~~~~L~~L~L~~n~-l~~~--~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 228 ---------------GPVNVELTILKLQHNN-LTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp ---------------CSCCSCCCEEECCSSC-CCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred ---------------cccCCCCCEEECCCCC-CCCC--hhh---ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 1234689999999864 4332 112 278999999999986555556778899999999999
Q ss_pred cCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 358 KCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 358 ~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
++ .++.+ |.. ...+++|+.|++++| .+..++. .+..+++|++|++++|+
T Consensus 287 ~N-~l~~l-~~~-~~~l~~L~~L~Ls~N-~l~~i~~--------~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 287 NN-RLVAL-NLY-GQPIPTLKVLDLSHN-HLLHVER--------NQPQFDRLENLYLDHNS 335 (597)
T ss_dssp TS-CCCEE-ECS-SSCCTTCCEEECCSS-CCCCCGG--------GHHHHTTCSEEECCSSC
T ss_pred CC-CCCCC-Ccc-cccCCCCcEEECCCC-CCCccCc--------ccccCCCCCEEECCCCC
Confidence 85 57776 442 356899999999998 6666654 46678899999988763
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5.2e-17 Score=153.24 Aligned_cols=292 Identities=12% Similarity=0.065 Sum_probs=186.7
Q ss_pred ccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857 43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121 (439)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 121 (439)
+++.+++++ .++..++.. ..++|+.|+++++ .++.++. .++.+++|++|+++++.+... .|..+
T Consensus 32 ~l~~l~~~~-~~l~~lp~~----~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSD-LGLEKVPKD----LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKI---------SPGAF 96 (330)
T ss_dssp ETTEEECTT-SCCCSCCCS----CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCB---------CTTTT
T ss_pred CCeEEEecC-CCccccCcc----CCCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCee---------CHHHh
Confidence 677777776 233444321 2478889999886 4665554 578889999999888443311 14455
Q ss_pred cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL 201 (439)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 201 (439)
..+++|++|+++++. +.+++.. .+++|++|+++++ .++. ++...+..+++|++|+++++.. .....
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~l~~~------~~~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~---- 162 (330)
T 1xku_A 97 APLVKLERLYLSKNQ-LKELPEK------MPKTLQELRVHEN-EITK-VRKSVFNGLNQMIVVELGTNPL-KSSGI---- 162 (330)
T ss_dssp TTCTTCCEEECCSSC-CSBCCSS------CCTTCCEEECCSS-CCCB-BCHHHHTTCTTCCEEECCSSCC-CGGGB----
T ss_pred cCCCCCCEEECCCCc-CCccChh------hcccccEEECCCC-cccc-cCHhHhcCCccccEEECCCCcC-CccCc----
Confidence 678899999998664 5554433 3578999999886 4555 4555588899999999998643 21100
Q ss_pred ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeee
Q 046857 202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFL 281 (439)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~ 281 (439)
....+..+ ++|+.|+++++ .++.++... .++|+.|++.++ .+....+.
T Consensus 163 --~~~~~~~l-~~L~~L~l~~n-~l~~l~~~~-----~~~L~~L~l~~n-~l~~~~~~---------------------- 210 (330)
T 1xku_A 163 --ENGAFQGM-KKLSYIRIADT-NITTIPQGL-----PPSLTELHLDGN-KITKVDAA---------------------- 210 (330)
T ss_dssp --CTTGGGGC-TTCCEEECCSS-CCCSCCSSC-----CTTCSEEECTTS-CCCEECTG----------------------
T ss_pred --ChhhccCC-CCcCEEECCCC-ccccCCccc-----cccCCEEECCCC-cCCccCHH----------------------
Confidence 01112224 88999999887 355554332 378899988885 34444322
Q ss_pred eccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCC
Q 046857 282 LAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHG 361 (439)
Q Consensus 282 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 361 (439)
....+++|+.|+++++ .++.+....+. .+++|++|++++| .++.+|..+..+++|++|+++++ .
T Consensus 211 ----------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~ 274 (330)
T 1xku_A 211 ----------SLKGLNNLAKLGLSFN-SISAVDNGSLA---NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-N 274 (330)
T ss_dssp ----------GGTTCTTCCEEECCSS-CCCEECTTTGG---GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-C
T ss_pred ----------HhcCCCCCCEEECCCC-cCceeChhhcc---CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-c
Confidence 2335678888888875 35555443333 6789999999887 56688888888999999999885 5
Q ss_pred cccccChhHH-----hhccccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857 362 LINVLTLSAS-----KNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL 417 (439)
Q Consensus 362 l~~l~p~~~~-----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c 417 (439)
++.+.+..+. ...++|+.+++.+++ +...... +..+..++.++.++++++
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~-----~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQ-----PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSC-----GGGGTTCCCGGGEEC---
T ss_pred CCccChhhcCCcccccccccccceEeecCc-ccccccC-----ccccccccceeEEEeccc
Confidence 7776333221 123678888888774 2221110 114455667777777654
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.5e-16 Score=150.08 Aligned_cols=289 Identities=12% Similarity=0.106 Sum_probs=191.5
Q ss_pred ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCC
Q 046857 10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGI 88 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~ 88 (439)
.+++.++++++. ++.+|..+ .+++++|+++++ ++..++. ..+..+++|++|++++|. +..+ |..+
T Consensus 31 c~l~~l~~~~~~-l~~lp~~~----------~~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (330)
T 1xku_A 31 CHLRVVQCSDLG-LEKVPKDL----------PPDTALLDLQNN-KITEIKD-GDFKNLKNLHTLILINNK-ISKISPGAF 96 (330)
T ss_dssp EETTEEECTTSC-CCSCCCSC----------CTTCCEEECCSS-CCCCBCT-TTTTTCTTCCEEECCSSC-CCCBCTTTT
T ss_pred CCCeEEEecCCC-ccccCccC----------CCCCeEEECCCC-cCCEeCh-hhhccCCCCCEEECCCCc-CCeeCHHHh
Confidence 378888888764 55566532 469999999993 4444432 136789999999999974 5554 7889
Q ss_pred cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857 89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS 168 (439)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~ 168 (439)
+.+++|++|+++++.+. .+|..+ +++|++|+++++. +..++... ...+++|+.|+++++..-..
T Consensus 97 ~~l~~L~~L~Ls~n~l~----------~l~~~~--~~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~l~~~ 160 (330)
T 1xku_A 97 APLVKLERLYLSKNQLK----------ELPEKM--PKTLQELRVHENE-ITKVRKSV---FNGLNQMIVVELGTNPLKSS 160 (330)
T ss_dssp TTCTTCCEEECCSSCCS----------BCCSSC--CTTCCEEECCSSC-CCBBCHHH---HTTCTTCCEEECCSSCCCGG
T ss_pred cCCCCCCEEECCCCcCC----------ccChhh--cccccEEECCCCc-ccccCHhH---hcCCccccEEECCCCcCCcc
Confidence 99999999999995433 333332 3789999999765 44433221 13689999999998743221
Q ss_pred ccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc-ccCCCcccCCCCccEEeE
Q 046857 169 AIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF-CNFTGNIIEMPMLWSLTI 247 (439)
Q Consensus 169 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l 247 (439)
......+..+++|++|+++++ .+..++. ..+++|++|+++++. ++.+ +... ..+++|+.|++
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~L 223 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADT-NITTIPQ------------GLPPSLTELHLDGNK-ITKVDAASL---KGLNNLAKLGL 223 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSS-CCCSCCS------------SCCTTCSEEECTTSC-CCEECTGGG---TTCTTCCEEEC
T ss_pred CcChhhccCCCCcCEEECCCC-ccccCCc------------cccccCCEEECCCCc-CCccCHHHh---cCCCCCCEEEC
Confidence 122334788999999999986 3443322 123899999999984 4443 2222 47899999999
Q ss_pred ecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCc
Q 046857 248 ENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANL 327 (439)
Q Consensus 248 ~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L 327 (439)
.++ .+...++. ....+++|+.|+++++ .++.++.. +. .+++|
T Consensus 224 s~n-~l~~~~~~--------------------------------~~~~l~~L~~L~L~~N-~l~~lp~~-l~---~l~~L 265 (330)
T 1xku_A 224 SFN-SISAVDNG--------------------------------SLANTPHLRELHLNNN-KLVKVPGG-LA---DHKYI 265 (330)
T ss_dssp CSS-CCCEECTT--------------------------------TGGGSTTCCEEECCSS-CCSSCCTT-TT---TCSSC
T ss_pred CCC-cCceeChh--------------------------------hccCCCCCCEEECCCC-cCccCChh-hc---cCCCc
Confidence 985 45544332 1335678888888876 45544332 22 67888
Q ss_pred ceEEeecCCCcccccCCCc-------cCCCcceEEEccCCCcccc-cChhHHhhccccceEEEccc
Q 046857 328 ERLEISECSKLQKLVPPSW-------HLENLWGLQVSKCHGLINV-LTLSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 328 ~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~~l-~p~~~~~~l~~L~~L~l~~c 385 (439)
++|+++++. ++.++.... ..+.++.+++.+.+ +..+ ++...+..+++++.++++++
T Consensus 266 ~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 266 QVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CEEECCCCc-CCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 899888874 555543322 35788899998854 4432 24345667788888888765
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=1e-16 Score=151.26 Aligned_cols=286 Identities=11% Similarity=0.099 Sum_probs=190.1
Q ss_pred ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCC
Q 046857 10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGI 88 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~ 88 (439)
..++.++++++. ++.+|.. .+++|++|+++++ ++..++. ..+..+++|++|++++|. +..+ |..+
T Consensus 33 c~l~~l~~~~~~-l~~ip~~----------~~~~l~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 98 (332)
T 2ft3_A 33 CHLRVVQCSDLG-LKAVPKE----------ISPDTTLLDLQNN-DISELRK-DDFKGLQHLYALVLVNNK-ISKIHEKAF 98 (332)
T ss_dssp EETTEEECCSSC-CSSCCSC----------CCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECGGGS
T ss_pred ccCCEEECCCCC-ccccCCC----------CCCCCeEEECCCC-cCCccCH-hHhhCCCCCcEEECCCCc-cCccCHhHh
Confidence 478999998875 5666654 2479999999993 3444422 236789999999999974 5554 7788
Q ss_pred cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857 89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS 168 (439)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~ 168 (439)
+.+++|++|+++++.+. .+|..+. ++|++|+++++. +..++... ...+++|+.|++.++. ++.
T Consensus 99 ~~l~~L~~L~L~~n~l~----------~l~~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n~-l~~ 161 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLV----------EIPPNLP--SSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGNP-LEN 161 (332)
T ss_dssp TTCTTCCEEECCSSCCC----------SCCSSCC--TTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSCC-CBG
T ss_pred hCcCCCCEEECCCCcCC----------ccCcccc--ccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCCc-ccc
Confidence 99999999999995433 3333332 789999999765 55544332 2468999999999874 431
Q ss_pred --ccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccc-cCCCcccCCCCccEE
Q 046857 169 --AIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFC-NFTGNIIEMPMLWSL 245 (439)
Q Consensus 169 --~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~L~~L 245 (439)
..+. .+..+ +|++|+++++ .+..++. ..+++|++|+++++. ++.++ ... ..+++|+.|
T Consensus 162 ~~~~~~-~~~~l-~L~~L~l~~n-~l~~l~~------------~~~~~L~~L~l~~n~-i~~~~~~~l---~~l~~L~~L 222 (332)
T 2ft3_A 162 SGFEPG-AFDGL-KLNYLRISEA-KLTGIPK------------DLPETLNELHLDHNK-IQAIELEDL---LRYSKLYRL 222 (332)
T ss_dssp GGSCTT-SSCSC-CCSCCBCCSS-BCSSCCS------------SSCSSCSCCBCCSSC-CCCCCTTSS---TTCTTCSCC
T ss_pred CCCCcc-cccCC-ccCEEECcCC-CCCccCc------------cccCCCCEEECCCCc-CCccCHHHh---cCCCCCCEE
Confidence 2233 35556 8999999986 3444332 123799999999874 44433 222 377899999
Q ss_pred eEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccC
Q 046857 246 TIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFA 325 (439)
Q Consensus 246 ~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 325 (439)
++.++ .+..+++. ....+++|+.|+++++ .++.++.. +. .++
T Consensus 223 ~L~~N-~l~~~~~~--------------------------------~~~~l~~L~~L~L~~N-~l~~lp~~-l~---~l~ 264 (332)
T 2ft3_A 223 GLGHN-QIRMIENG--------------------------------SLSFLPTLRELHLDNN-KLSRVPAG-LP---DLK 264 (332)
T ss_dssp BCCSS-CCCCCCTT--------------------------------GGGGCTTCCEEECCSS-CCCBCCTT-GG---GCT
T ss_pred ECCCC-cCCcCChh--------------------------------HhhCCCCCCEEECCCC-cCeecChh-hh---cCc
Confidence 99885 44444322 1345678888888875 45555433 22 678
Q ss_pred CcceEEeecCCCcccccCCCc-------cCCCcceEEEccCCCcc--cccChhHHhhccccceEEEcccc
Q 046857 326 NLERLEISECSKLQKLVPPSW-------HLENLWGLQVSKCHGLI--NVLTLSASKNLVNLGRMKIVDCK 386 (439)
Q Consensus 326 ~L~~L~l~~c~~l~~l~~~~~-------~l~~L~~L~l~~c~~l~--~l~p~~~~~~l~~L~~L~l~~c~ 386 (439)
+|++|+++++ .++.++.... ..+.|+.|++.+++ +. .+ +...+..+++|+.++++++.
T Consensus 265 ~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~-~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEV-QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGS-CGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-cccccc-Ccccccccchhhhhhccccc
Confidence 8888888876 3555543221 25678899998865 43 33 44456778899999888763
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=2.5e-17 Score=155.14 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=50.1
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE 120 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 120 (439)
+++++.|++++ .++..++. .+..+++|++|+++++ .+..+|..++.+++|++|++++|. +..+|..
T Consensus 80 ~~~l~~L~L~~-n~l~~lp~--~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~----------l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQFPD--QAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP----------LRALPAS 145 (328)
T ss_dssp STTCCEEEEES-SCCSSCCS--CGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC----------CCCCCGG
T ss_pred ccceeEEEccC-CCchhcCh--hhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc----------cccCcHH
Confidence 45666666666 23333322 2555667777777664 344666666666677777666622 2234445
Q ss_pred hcCCCCccEEEccCCCCceeec
Q 046857 121 MIGFRDIQYLQLSHFPRLKEIW 142 (439)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~i~ 142 (439)
+..+++|+.|++++|.....++
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCC
T ss_pred HhcCcCCCEEECCCCCCccccC
Confidence 5556666666666655444433
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=3e-17 Score=154.62 Aligned_cols=83 Identities=23% Similarity=0.235 Sum_probs=46.5
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL 374 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l 374 (439)
.+++|+.|+++++...+.++.. +. .+++|++|++++|...+.+|..+..+++|++|++++|+.++.+ |.. +..+
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~-~~---~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i-P~~-l~~L 300 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPI-FG---GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSL-IAQL 300 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCC-TT---CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC-CGG-GGGS
T ss_pred cCCCCCEEECcCCcchhhhHHH-hc---CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc-cHH-Hhhc
Confidence 4556666666655444433221 11 4566666666666666666666666666666666666555554 543 3456
Q ss_pred cccceEEEc
Q 046857 375 VNLGRMKIV 383 (439)
Q Consensus 375 ~~L~~L~l~ 383 (439)
++|+.+++.
T Consensus 301 ~~L~~l~l~ 309 (328)
T 4fcg_A 301 PANCIILVP 309 (328)
T ss_dssp CTTCEEECC
T ss_pred cCceEEeCC
Confidence 666666554
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=3.1e-19 Score=182.08 Aligned_cols=342 Identities=13% Similarity=0.056 Sum_probs=201.1
Q ss_pred cCceEEEccccccceeccccccccccccccccccceeeccccccccccc---cccCccCCCCccEEeeccCCCc----cc
Q 046857 11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNM----KT 83 (439)
Q Consensus 11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l----~~ 83 (439)
+|++|+|.+|..+.... ... -...+++|++|+++++. +.+.. .......+++|++|+++++..- ..
T Consensus 139 ~L~~L~L~~~~~~~~~~--l~~----~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDG--LLS----IVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp GCCEEEEESCEEEEHHH--HHH----HHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred cCcEEECcCCCCcCHHH--HHH----HHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 39999999987433210 000 00147888888888863 21111 0011345788888888775432 23
Q ss_pred cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCc----------------eee-----c
Q 046857 84 FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRL----------------KEI-----W 142 (439)
Q Consensus 84 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l----------------~~i-----~ 142 (439)
++..+..+++|++|+++++. +..++..+..+++|++|.++..... +.+ .
T Consensus 212 l~~~~~~~~~L~~L~L~~~~----------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFE----------ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCB----------GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC
T ss_pred HHHHHhhCCCCcEEeccCcc----------HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc
Confidence 44445667888888887732 2224444445566666666421110 000 0
Q ss_pred CCCCCC--cCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEec
Q 046857 143 HGQALP--VRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTL 220 (439)
Q Consensus 143 ~~~~l~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 220 (439)
... ++ ...+++|++|++++|. +++......+..+++|++|++.++..-..+..+. . .+++|++|++
T Consensus 282 ~~~-l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~---------~-~~~~L~~L~L 349 (592)
T 3ogk_B 282 PNE-MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA---------Q-YCKQLKRLRI 349 (592)
T ss_dssp TTT-GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH---------H-HCTTCCEEEE
T ss_pred hhH-HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH---------H-hCCCCCEEEe
Confidence 000 11 1357899999999987 6543333446889999999998432212222111 1 1389999999
Q ss_pred CC----------cccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--C----ccCcceeeeecc
Q 046857 221 ID----------LPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--Q----KLTLEEYFLLAH 284 (439)
Q Consensus 221 ~~----------~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~----~~~l~~~~~~~~ 284 (439)
.+ |..++...... ....+++|++|++ .|..+.......+...+++|++| . ++.+++.+. +
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~-l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~--~ 425 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIA-LAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL--D 425 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHH-HHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC--H
T ss_pred ecCccccccccccCccCHHHHHH-HHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH--H
Confidence 95 66554321111 1236899999999 44666655444444558888888 2 555554211 0
Q ss_pred ccccccccccccCccceEeecCCCC-ceeccccCCccccccCCcceEEeecCCCcc-cccCCCccCCCcceEEEccCCCc
Q 046857 285 QVQPLFDEKVAFPQLRKLRLSGLHK-VQHLWKENDESNKVFANLERLEISECSKLQ-KLVPPSWHLENLWGLQVSKCHGL 362 (439)
Q Consensus 285 ~~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l 362 (439)
.+.+. ....+++|++|+++.|.+ +....... +...+++|++|++++|..-. .++..+..+++|++|++++|+ +
T Consensus 426 ~~~~~--~~~~~~~L~~L~L~~~~~~l~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l 500 (592)
T 3ogk_B 426 NGVRS--LLIGCKKLRRFAFYLRQGGLTDLGLSY--IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-F 500 (592)
T ss_dssp HHHHH--HHHHCTTCCEEEEECCGGGCCHHHHHH--HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-C
T ss_pred HHHHH--HHHhCCCCCEEEEecCCCCccHHHHHH--HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-C
Confidence 00000 123578999999977653 22221111 11257899999999886322 234445678999999999997 6
Q ss_pred ccccChhHHhhccccceEEEcccccchhh
Q 046857 363 INVLTLSASKNLVNLGRMKIVDCKMMEEI 391 (439)
Q Consensus 363 ~~l~p~~~~~~l~~L~~L~l~~c~~l~~~ 391 (439)
++.....+...+++|+.|++++|. ++..
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred cHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 654344456788999999999995 5443
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=1.5e-16 Score=163.26 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=78.7
Q ss_pred cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857 296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL 374 (439)
Q Consensus 296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l 374 (439)
+++++.++++.+ .+.......+. .+++|+.|+++++..... .|..+..+++|++|++++| +++.++|. .+..+
T Consensus 444 l~~l~~l~ls~n-~l~~~~~~~~~---~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l 517 (635)
T 4g8a_A 444 LRNLIYLDISHT-HTRVAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSL 517 (635)
T ss_dssp CTTCCEEECTTS-CCEECCTTTTT---TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTC
T ss_pred cccccccccccc-ccccccccccc---cchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChH-HHcCC
Confidence 345556665553 23333333222 678999999999876664 4566778999999999996 68888554 46789
Q ss_pred cccceEEEcccccchhhccccccccCCCceEeccccEEecCCC
Q 046857 375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCL 417 (439)
Q Consensus 375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c 417 (439)
++|+.|+++++ .++.+... .+..+++|++|+++++
T Consensus 518 ~~L~~L~Ls~N-~l~~l~~~-------~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 518 SSLQVLNMSHN-NFFSLDTF-------PYKCLNSLQVLDYSLN 552 (635)
T ss_dssp TTCCEEECTTS-CCCBCCCG-------GGTTCTTCCEEECTTS
T ss_pred CCCCEEECCCC-cCCCCChh-------HHhCCCCCCEEECCCC
Confidence 99999999998 66666432 5677899999999886
No 49
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=2.9e-19 Score=182.39 Aligned_cols=339 Identities=17% Similarity=0.132 Sum_probs=168.4
Q ss_pred ccccCceEEEccccccce--eccccccccccccccccccceeeccccccccccc---cccCccCCCCccEEeeccCC-Cc
Q 046857 8 IPNSLVNLNVSYCEKIEE--IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCP-NM 81 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~-~l 81 (439)
.+++|++|+|.+|..+.. ++.... .+++|++|++++|. +.+.. .......+++|++|++++|. .+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~--------~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 198 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAA--------TCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHH--------HCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCC
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHH--------hCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcC
Confidence 578999999999975554 222111 47888899888864 22211 11112357788888888875 22
Q ss_pred c--ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC-------------------Ccee
Q 046857 82 K--TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP-------------------RLKE 140 (439)
Q Consensus 82 ~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-------------------~l~~ 140 (439)
. .++..+..+++|++|++++| ..+..++..+..+++|++|.+..+. .++.
T Consensus 199 ~~~~l~~l~~~~~~L~~L~L~~~---------~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~ 269 (594)
T 2p1m_B 199 SFSALERLVTRCPNLKSLKLNRA---------VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEECCTT---------SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCE
T ss_pred CHHHHHHHHHhCCCCcEEecCCC---------CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccc
Confidence 2 23222344688888888773 2223344445556666666654332 1111
Q ss_pred e------cCCCCCCc--CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccc
Q 046857 141 I------WHGQALPV--RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLF 212 (439)
Q Consensus 141 i------~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 212 (439)
+ .... ++. ..+++|++|++++|. +++......+..+++|++|++.+|..-..+..+. . .+
T Consensus 270 Ls~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~---------~-~~ 337 (594)
T 2p1m_B 270 LSGFWDAVPAY-LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA---------S-TC 337 (594)
T ss_dssp EECCBTCCGGG-GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH---------H-HC
T ss_pred ccCCcccchhh-HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH---------H-hC
Confidence 1 0000 111 135677777777765 5443333335567777777777662111111110 0 12
Q ss_pred cccceEecCCc--------ccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--C------ccCc
Q 046857 213 PRLFSLTLIDL--------PKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--Q------KLTL 276 (439)
Q Consensus 213 ~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~------~~~l 276 (439)
++|++|++.+| ..+....... ....+++|+.|.+ .|..+.......+...+++|+.| . |+.+
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~-l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVS-VSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHH-HHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHH-HHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 67777777432 2222111000 0123667777744 33455443333333345666666 2 1333
Q ss_pred ceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEE
Q 046857 277 EEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQ 355 (439)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~ 355 (439)
+..+. +.+... -...+++|+.|++++ .+.......+. ..+++|++|++++|......+..+ ..+++|++|+
T Consensus 416 ~~~~~--~~~~~~--l~~~~~~L~~L~L~~--~l~~~~~~~l~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 416 TLEPL--DIGFGA--IVEHCKDLRRLSLSG--LLTDKVFEYIG--TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TCCCT--HHHHHH--HHHHCTTCCEEECCS--SCCHHHHHHHH--HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred cCCch--hhHHHH--HHhhCCCccEEeecC--cccHHHHHHHH--HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 32100 000000 023456777777754 33322111111 136677777777765322211112 3577777777
Q ss_pred EccCCCcccccChhHHhhccccceEEEccccc
Q 046857 356 VSKCHGLINVLTLSASKNLVNLGRMKIVDCKM 387 (439)
Q Consensus 356 l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~ 387 (439)
+++|+. ++.....+...+++|+.|++++|+.
T Consensus 488 L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 488 IRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 777763 4332223345567777777777744
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=5.6e-17 Score=159.47 Aligned_cols=143 Identities=12% Similarity=0.031 Sum_probs=74.9
Q ss_pred CccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCC-------------ccEE
Q 046857 7 GIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPS-------------LERV 73 (439)
Q Consensus 7 ~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-------------L~~L 73 (439)
...+.|++|+++++.. +.+|..++ .+++|++|+++++.-...++ ..++.+.+ +++|
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~--------~L~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAE--------NVKSKTEYYNAWSEWERNAP--PGNGEQREMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHTSC--TTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred cccccchhhhcccCch-hhCChhHh--------cccchhhhhccCCcccccCC--cccccchhcchhhhhhhhccCCCEE
Confidence 3568899999999875 88888776 58899999999943222232 22555555 4999
Q ss_pred eeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccC
Q 046857 74 SMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFN 153 (439)
Q Consensus 74 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~ 153 (439)
++++| .++.+|.. .++|++|+++++... .+|. ..++|++|+++++. +..++. ..+
T Consensus 77 ~l~~~-~l~~lp~~---~~~L~~L~l~~n~l~----------~lp~---~~~~L~~L~l~~n~-l~~l~~-------~~~ 131 (454)
T 1jl5_A 77 ELNNL-GLSSLPEL---PPHLESLVASCNSLT----------ELPE---LPQSLKSLLVDNNN-LKALSD-------LPP 131 (454)
T ss_dssp ECTTS-CCSCCCSC---CTTCSEEECCSSCCS----------SCCC---CCTTCCEEECCSSC-CSCCCS-------CCT
T ss_pred EecCC-ccccCCCC---cCCCCEEEccCCcCC----------cccc---ccCCCcEEECCCCc-cCcccC-------CCC
Confidence 99997 57777763 579999999985433 2332 24677888887653 433221 225
Q ss_pred CccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 154 YLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 154 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
+|++|+++++ .++. +| . ++.+++|++|+++++
T Consensus 132 ~L~~L~L~~n-~l~~-lp-~-~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 132 LLEYLGVSNN-QLEK-LP-E-LQNSSFLKIIDVDNN 163 (454)
T ss_dssp TCCEEECCSS-CCSS-CC-C-CTTCTTCCEEECCSS
T ss_pred CCCEEECcCC-CCCC-Cc-c-cCCCCCCCEEECCCC
Confidence 7777777775 4544 45 2 666777777777765
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=1.4e-16 Score=148.97 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=34.3
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCccc
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLIN 364 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 364 (439)
.+++|++|+++++. +.......+. .+++|++|+++++.....+|.. ..+++|+.+++.+++.+..
T Consensus 242 ~l~~L~~L~Ls~N~-l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 242 LSKNLNGLDLRNNR-IYGTLPQGLT---QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCTTCCEEECCSSC-CEECCCGGGG---GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ccCCCCEEECcCCc-ccCcCChHHh---cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 34566666666543 2211111122 5666777777666444355543 5667777777766554433
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1.2e-18 Score=172.28 Aligned_cols=141 Identities=19% Similarity=0.174 Sum_probs=60.6
Q ss_pred cccccceeeccccccccccc---cccCccCCCCccEEeeccCCCccc-cccC-CcCcc----CccceeecCceeeecCcC
Q 046857 40 AFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNMKT-FSQG-IVSTP----KLHEVQEEGELCRWEGNL 110 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~-l~~~-~~~l~----~L~~L~l~~~~~~~~~~~ 110 (439)
.+++|++|++++|. +.+.. ....+..+++|++|+++++. +.. .+.. ...++ +|++|++++|.+..
T Consensus 26 ~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~---- 99 (461)
T 1z7x_W 26 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG---- 99 (461)
T ss_dssp HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG----
T ss_pred hcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCH----
Confidence 35566666666642 11110 01113345666666666643 322 1111 11122 46666666643221
Q ss_pred chhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC---cCccCCccEEEeccccccccccc---hhHHhhcccccee
Q 046857 111 NSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP---VRFFNYLAELEVDYCTNMSSAIP---ANLLRCLNNLARL 184 (439)
Q Consensus 111 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~---~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L 184 (439)
.....++..+..+++|++|+++++. +.+..... +. ....++|++|++++| .+++... ...+..+++|++|
T Consensus 100 -~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 100 -AGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp -GGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEE
T ss_pred -HHHHHHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEE
Confidence 1223445555556666666666544 32110000 00 012345666666665 3332111 1124445666666
Q ss_pred eecccc
Q 046857 185 EVRNCD 190 (439)
Q Consensus 185 ~l~~~~ 190 (439)
+++++.
T Consensus 176 ~L~~n~ 181 (461)
T 1z7x_W 176 TVSNND 181 (461)
T ss_dssp ECCSSB
T ss_pred ECcCCC
Confidence 666553
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=1e-16 Score=150.02 Aligned_cols=107 Identities=15% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCccEEeeccCCCcc--ccccCCcCccCccceeecC-ceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857 68 PSLERVSMTRCPNMK--TFSQGIVSTPKLHEVQEEG-ELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG 144 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~ 144 (439)
.++++|+++++..-. .+|..++.+++|++|++++ +. ....+|..+..+++|++|+++++.-...++..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~---------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN---------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT---------EESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc---------ccccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 567777777754333 4666677777777777763 21 11223444455666666666654422233322
Q ss_pred CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
. ..+++|++|+++++ .++..+|.. +..+++|++|+++++
T Consensus 121 ~----~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 121 L----SQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGN 159 (313)
T ss_dssp G----GGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSS
T ss_pred H----hCCCCCCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCC
Confidence 1 34566666666654 333334443 555666666666654
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=149.44 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=106.1
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.++|++|+++++ ++..++. ..+..+++|++|+++++ .++.+ |..++.+++|++|++++|.+ ..++.
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l----------~~~~~ 117 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISN-SDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL----------SNLSS 117 (353)
T ss_dssp CTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC----------SSCCH
T ss_pred cccCcEEECCCC-cCcccCH-HHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC----------CcCCH
Confidence 458888888883 3444322 12567888888888886 45554 45577788888888887432 23333
Q ss_pred h-hcCCCCccEEEccCCCCceeecC-CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcc
Q 046857 120 E-MIGFRDIQYLQLSHFPRLKEIWH-GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH 197 (439)
Q Consensus 120 ~-~~~~~~L~~L~l~~~~~l~~i~~-~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 197 (439)
. +..+++|++|+++++. +..++. .. ...+++|++|+++++..++...+ ..+..+++|++|+++++. +....+
T Consensus 118 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~---~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~ 191 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNP-YKTLGETSL---FSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASD-LQSYEP 191 (353)
T ss_dssp HHHTTCTTCSEEECTTCC-CSSSCSSCS---CTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT-CCEECT
T ss_pred hHhCCCccCCEEECCCCC-CcccCchhh---hccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCC-cCccCH
Confidence 3 4567888888888654 444443 11 13577888888887755655333 336777888888887763 222211
Q ss_pred ccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857 198 LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
..+..+ ++|++|+++++. ++.++... ...+++|+.|++.++
T Consensus 192 --------~~l~~l-~~L~~L~l~~n~-l~~~~~~~--~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 192 --------KSLKSI-QNVSHLILHMKQ-HILLLEIF--VDVTSSVECLELRDT 232 (353)
T ss_dssp --------TTTTTC-SEEEEEEEECSC-STTHHHHH--HHHTTTEEEEEEESC
T ss_pred --------HHHhcc-ccCCeecCCCCc-cccchhhh--hhhcccccEEECCCC
Confidence 011123 677777776653 33332211 123567777777664
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=2.4e-15 Score=152.76 Aligned_cols=255 Identities=16% Similarity=0.129 Sum_probs=184.9
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 121 (439)
.++++|++++ .++..++.. + .++|++|++++| .++.+|. .+++|++|++++|.+ +.+|.
T Consensus 40 ~~l~~L~ls~-n~L~~lp~~--l--~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l----------~~lp~-- 98 (622)
T 3g06_A 40 NGNAVLNVGE-SGLTTLPDC--L--PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQL----------TSLPV-- 98 (622)
T ss_dssp HCCCEEECCS-SCCSCCCSC--C--CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCC----------SCCCC--
T ss_pred CCCcEEEecC-CCcCccChh--h--CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcC----------CcCCC--
Confidence 4689999998 345555332 2 389999999997 6778886 579999999999543 33444
Q ss_pred cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL 201 (439)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 201 (439)
.+++|++|+++++. +..++. .+++|+.|+++++ +++. +|.. +++|++|++++| .+..++.
T Consensus 99 -~l~~L~~L~Ls~N~-l~~l~~-------~l~~L~~L~L~~N-~l~~-lp~~----l~~L~~L~Ls~N-~l~~l~~---- 158 (622)
T 3g06_A 99 -LPPGLLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTS-LPVL----PPGLQELSVSDN-QLASLPA---- 158 (622)
T ss_dssp -CCTTCCEEEECSCC-CCCCCC-------CCTTCCEEECCSS-CCSC-CCCC----CTTCCEEECCSS-CCSCCCC----
T ss_pred -CCCCCCEEECcCCc-CCCCCC-------CCCCcCEEECCCC-CCCc-CCCC----CCCCCEEECcCC-cCCCcCC----
Confidence 57899999999764 554332 5788999999987 4665 4543 589999999987 4444332
Q ss_pred ccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCccee
Q 046857 202 NADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEY 279 (439)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~ 279 (439)
.+++|+.|++.++ .++.++ ..+++|+.|++.++ .+..++. ..++|+.| +.+.+..+
T Consensus 159 ---------~~~~L~~L~L~~N-~l~~l~------~~~~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 159 ---------LPSELCKLWAYNN-QLTSLP------MLPSGLQELSVSDN-QLASLPT-----LPSELYKLWAYNNRLTSL 216 (622)
T ss_dssp ---------CCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSC
T ss_pred ---------ccCCCCEEECCCC-CCCCCc------ccCCCCcEEECCCC-CCCCCCC-----ccchhhEEECcCCccccc
Confidence 2378999999987 455554 25689999999985 4555432 34677777 55555553
Q ss_pred eeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccC
Q 046857 280 FLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKC 359 (439)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 359 (439)
. ..+++|+.|+++++ .++.++ . .+++|++|+++++ .++.+|. .+++|++|++++|
T Consensus 217 ~-------------~~~~~L~~L~Ls~N-~L~~lp-~------~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 217 P-------------ALPSGLKELIVSGN-RLTSLP-V------LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp C-------------CCCTTCCEEECCSS-CCSCCC-C------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred C-------------CCCCCCCEEEccCC-ccCcCC-C------CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC
Confidence 2 13578999999886 555554 2 6789999999887 5677776 6789999999986
Q ss_pred CCcccccChhHHhhccccceEEEccccc
Q 046857 360 HGLINVLTLSASKNLVNLGRMKIVDCKM 387 (439)
Q Consensus 360 ~~l~~l~p~~~~~~l~~L~~L~l~~c~~ 387 (439)
+++.+ |.. +..+++|+.|++++++-
T Consensus 272 -~L~~l-p~~-l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 272 -QLTRL-PES-LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCCSC-CGG-GGGSCTTCEEECCSCCC
T ss_pred -CCCcC-CHH-HhhccccCEEEecCCCC
Confidence 57776 764 56889999999998843
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=5.2e-15 Score=150.23 Aligned_cols=261 Identities=19% Similarity=0.134 Sum_probs=188.5
Q ss_pred ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCc
Q 046857 10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIV 89 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 89 (439)
.+++.|+++++. +..+|..+ .++|++|+++++ ++..++. .+++|++|++++| .++.+|.
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~l----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDCL----------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSCC----------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC---
T ss_pred CCCcEEEecCCC-cCccChhh----------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC---
Confidence 468899999876 56776643 369999999994 4444422 5799999999996 5777876
Q ss_pred CccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857 90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA 169 (439)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 169 (439)
.+++|++|++++|.+. .+|. .+++|+.|+++++. +..++. .+++|++|++++| .++.
T Consensus 99 ~l~~L~~L~Ls~N~l~----------~l~~---~l~~L~~L~L~~N~-l~~lp~-------~l~~L~~L~Ls~N-~l~~- 155 (622)
T 3g06_A 99 LPPGLLELSIFSNPLT----------HLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QLAS- 155 (622)
T ss_dssp CCTTCCEEEECSCCCC----------CCCC---CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSC-
T ss_pred CCCCCCEEECcCCcCC----------CCCC---CCCCcCEEECCCCC-CCcCCC-------CCCCCCEEECcCC-cCCC-
Confidence 6899999999985433 3333 46889999999765 554332 3589999999987 5654
Q ss_pred cchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEec
Q 046857 170 IPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIEN 249 (439)
Q Consensus 170 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 249 (439)
+|. .+.+|+.|++.++ .+..++. .+++|+.|+++++ .++.++. ..++|+.|++.+
T Consensus 156 l~~----~~~~L~~L~L~~N-~l~~l~~-------------~~~~L~~L~Ls~N-~l~~l~~------~~~~L~~L~L~~ 210 (622)
T 3g06_A 156 LPA----LPSELCKLWAYNN-QLTSLPM-------------LPSGLQELSVSDN-QLASLPT------LPSELYKLWAYN 210 (622)
T ss_dssp CCC----CCTTCCEEECCSS-CCSCCCC-------------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCS
T ss_pred cCC----ccCCCCEEECCCC-CCCCCcc-------------cCCCCcEEECCCC-CCCCCCC------ccchhhEEECcC
Confidence 343 2578999999975 4444431 2489999999987 3555432 347899999988
Q ss_pred CCCcceeccccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCc
Q 046857 250 CPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANL 327 (439)
Q Consensus 250 c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L 327 (439)
+ .+..++ ..+++|+.| +.+.+..++ ..+++|+.|+++++ .++.++. .+++|
T Consensus 211 N-~l~~l~-----~~~~~L~~L~Ls~N~L~~lp-------------~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L 263 (622)
T 3g06_A 211 N-RLTSLP-----ALPSGLKELIVSGNRLTSLP-------------VLPSELKELMVSGN-RLTSLPM-------LPSGL 263 (622)
T ss_dssp S-CCSSCC-----CCCTTCCEEECCSSCCSCCC-------------CCCTTCCEEECCSS-CCSCCCC-------CCTTC
T ss_pred C-cccccC-----CCCCCCCEEEccCCccCcCC-------------CCCCcCcEEECCCC-CCCcCCc-------ccccC
Confidence 5 455543 234778877 666666631 35689999999986 5665542 46899
Q ss_pred ceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccCh
Q 046857 328 ERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTL 368 (439)
Q Consensus 328 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~ 368 (439)
+.|++++| .++.+|..+.++++|+.|++++++ +....|.
T Consensus 264 ~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~-l~~~~~~ 302 (622)
T 3g06_A 264 LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LSERTLQ 302 (622)
T ss_dssp CEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC-CCHHHHH
T ss_pred cEEeCCCC-CCCcCCHHHhhccccCEEEecCCC-CCCcCHH
Confidence 99999998 577889888999999999999965 6554344
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=4.6e-15 Score=146.09 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=17.7
Q ss_pred cCCccEEEeccccccccccchhHHhhccccceeeeccccccc
Q 046857 152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLE 193 (439)
Q Consensus 152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 193 (439)
+++|++|+++++ .++. ++...+..+++|++|++++|+.++
T Consensus 146 l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIES-IPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp CTTCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECCCCTTCC
T ss_pred cCCCCEEECCCC-Ccce-eCHhHHhcCCcccEEeCCCCCCcc
Confidence 445555555443 2332 232234445555555555444443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=7.3e-15 Score=144.15 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=18.1
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecC
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISEC 335 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c 335 (439)
.+++|+.|+++++ .++.+....+. .+++|+.|+++++
T Consensus 253 ~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N 289 (440)
T 3zyj_A 253 NLQSLVEINLAHN-NLTLLPHDLFT---PLHHLERIHLHHN 289 (440)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTS---SCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-CCCccChhHhc---cccCCCEEEcCCC
Confidence 4455566665553 34444333222 4555666665543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=4.1e-15 Score=145.91 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=122.7
Q ss_pred CCCccEEeeccCCCccccc-cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC
Q 046857 67 FPSLERVSMTRCPNMKTFS-QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ 145 (439)
Q Consensus 67 l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 145 (439)
.++++.|+++++ .++.++ ..+..+++|++|++++|.+.... +..+.++++|++|+++++. +..++.+.
T Consensus 63 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~---------~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 131 (440)
T 3zyj_A 63 STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIE---------IGAFNGLANLNTLELFDNR-LTTIPNGA 131 (440)
T ss_dssp CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEEC---------GGGGTTCSSCCEEECCSSC-CSSCCTTT
T ss_pred CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccC---------hhhccCCccCCEEECCCCc-CCeeCHhH
Confidence 366777777775 344443 55667777777777774332211 1234456777777777543 44444322
Q ss_pred CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccc
Q 046857 146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK 225 (439)
Q Consensus 146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 225 (439)
+ ..+++|++|+++++ .++. ++...+..+++|++|++++++.+..++. ..+..+ ++|+.|+++++ .
T Consensus 132 -~--~~l~~L~~L~L~~N-~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------~~~~~l-~~L~~L~L~~n-~ 196 (440)
T 3zyj_A 132 -F--VYLSKLKELWLRNN-PIES-IPSYAFNRIPSLRRLDLGELKRLSYISE--------GAFEGL-SNLRYLNLAMC-N 196 (440)
T ss_dssp -S--CSCSSCCEEECCSC-CCCE-ECTTTTTTCTTCCEEECCCCTTCCEECT--------TTTTTC-SSCCEEECTTS-C
T ss_pred -h--hccccCceeeCCCC-cccc-cCHHHhhhCcccCEeCCCCCCCcceeCc--------chhhcc-cccCeecCCCC-c
Confidence 1 24667777777665 3444 3433466667777777776655544322 011112 66666666665 3
Q ss_pred ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeec
Q 046857 226 LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS 305 (439)
Q Consensus 226 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 305 (439)
++.++. ...+++|+.|+++++ .+..+.+. ....+++|+.|+++
T Consensus 197 l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~--------------------------------~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 197 LREIPN----LTPLIKLDELDLSGN-HLSAIRPG--------------------------------SFQGLMHLQKLWMI 239 (440)
T ss_dssp CSSCCC----CTTCSSCCEEECTTS-CCCEECTT--------------------------------TTTTCTTCCEEECT
T ss_pred Cccccc----cCCCcccCEEECCCC-ccCccChh--------------------------------hhccCccCCEEECC
Confidence 444432 125566666666664 33333222 12345677777776
Q ss_pred CCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccC
Q 046857 306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKC 359 (439)
Q Consensus 306 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 359 (439)
++ .++.+....+. .+++|++|+++++ .++.++.. +..+++|+.|+++++
T Consensus 240 ~n-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 240 QS-QIQVIERNAFD---NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TC-CCCEECTTSST---TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CC-ceeEEChhhhc---CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 64 35555444333 5667777777665 34444433 345677777777653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=4e-16 Score=146.26 Aligned_cols=246 Identities=12% Similarity=0.058 Sum_probs=146.1
Q ss_pred CCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857 66 EFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG 144 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~ 144 (439)
.+++|++|++++| .+..+ |..+..+++|++|++++|.+.... . +..+++|++|+++++. +..++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------~-~~~l~~L~~L~Ls~n~-l~~l~-- 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETL----------D-LESLSTLRTLDLNNNY-VQELL-- 96 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEE----------E-ETTCTTCCEEECCSSE-EEEEE--
T ss_pred cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcch----------h-hhhcCCCCEEECcCCc-ccccc--
Confidence 4567888888886 44444 345667777777777774433211 1 3346677777777553 44322
Q ss_pred CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857 145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
..++|+.|+++++ .++...+. .+++|++|+++++ .+..+.... +..+ ++|++|+++++.
T Consensus 97 ------~~~~L~~L~l~~n-~l~~~~~~----~~~~L~~L~l~~N-~l~~~~~~~--------~~~l-~~L~~L~Ls~N~ 155 (317)
T 3o53_A 97 ------VGPSIETLHAANN-NISRVSCS----RGQGKKNIYLANN-KITMLRDLD--------EGCR-SRVQYLDLKLNE 155 (317)
T ss_dssp ------ECTTCCEEECCSS-CCSEEEEC----CCSSCEEEECCSS-CCCSGGGBC--------TGGG-SSEEEEECTTSC
T ss_pred ------CCCCcCEEECCCC-ccCCcCcc----ccCCCCEEECCCC-CCCCccchh--------hhcc-CCCCEEECCCCC
Confidence 2356777777665 34432221 2456666666654 232221100 0112 566666666552
Q ss_pred cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEee
Q 046857 225 KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRL 304 (439)
Q Consensus 225 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 304 (439)
+..+.... ....+++|+.|++.++ .+..+. ....+++|+.|++
T Consensus 156 -l~~~~~~~-~~~~l~~L~~L~L~~N------------------------~l~~~~-----------~~~~l~~L~~L~L 198 (317)
T 3o53_A 156 -IDTVNFAE-LAASSDTLEHLNLQYN------------------------FIYDVK-----------GQVVFAKLKTLDL 198 (317)
T ss_dssp -CCEEEGGG-GGGGTTTCCEEECTTS------------------------CCCEEE-----------CCCCCTTCCEEEC
T ss_pred -CCcccHHH-HhhccCcCCEEECCCC------------------------cCcccc-----------cccccccCCEEEC
Confidence 22221111 1123455666666553 233321 1234789999999
Q ss_pred cCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcc-cccChhHHhhccccceEEEc
Q 046857 305 SGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLI-NVLTLSASKNLVNLGRMKIV 383 (439)
Q Consensus 305 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~l~p~~~~~~l~~L~~L~l~ 383 (439)
+++ .++.++.. +. .+++|++|+++++ .++.+|..+..+++|+.|++++++ +. .. ...++..+++|+.+++.
T Consensus 199 s~N-~l~~l~~~-~~---~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~-~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 199 SSN-KLAFMGPE-FQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGT-LRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CSS-CCCEECGG-GG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC-CBHHH-HHHHHHTCHHHHHHHHH
T ss_pred CCC-cCCcchhh-hc---ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC-ccCcC-HHHHHhccccceEEECC
Confidence 986 46665443 33 7899999999987 567888888899999999999865 44 43 33456788999999998
Q ss_pred ccccchhhc
Q 046857 384 DCKMMEEII 392 (439)
Q Consensus 384 ~c~~l~~~~ 392 (439)
++..++...
T Consensus 271 ~~~~l~~~~ 279 (317)
T 3o53_A 271 TVKKLTGQN 279 (317)
T ss_dssp HHHHHHSSS
T ss_pred CchhccCCc
Confidence 887666543
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=8e-15 Score=144.35 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=102.3
Q ss_pred ccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCc
Q 046857 70 LERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPV 149 (439)
Q Consensus 70 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~ 149 (439)
.+.++..+ ..+..+|.++. +++++|+++++.+.... +..+..+++|++|+++++. +..+.... +
T Consensus 56 ~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n~i~~~~---------~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~-- 119 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEVPQGIP--SNTRYLNLMENNIQMIQ---------ADTFRHLHHLEVLQLGRNS-IRQIEVGA-F-- 119 (452)
T ss_dssp SCEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEEC---------TTTTTTCTTCCEEECCSSC-CCEECTTT-T--
T ss_pred CcEEEECC-CCcCccCCCCC--CCccEEECcCCcCceEC---------HHHcCCCCCCCEEECCCCc-cCCcChhh-c--
Confidence 35565555 45667776553 67888888874433211 2345568888999998664 55554332 2
Q ss_pred CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc
Q 046857 150 RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF 229 (439)
Q Consensus 150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 229 (439)
..+++|++|+++++ .++. ++...+..+++|++|+++++. +..++. ..+..+ ++|+.|++.++..++.+
T Consensus 120 ~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~~l-~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 120 NGLASLNTLELFDN-WLTV-IPSGAFEYLSKLRELWLRNNP-IESIPS--------YAFNRV-PSLMRLDLGELKKLEYI 187 (452)
T ss_dssp TTCTTCCEEECCSS-CCSB-CCTTTSSSCTTCCEEECCSCC-CCEECT--------TTTTTC-TTCCEEECCCCTTCCEE
T ss_pred cCcccCCEEECCCC-cCCc-cChhhhcccCCCCEEECCCCC-cceeCH--------hHHhcC-CcccEEeCCCCCCcccc
Confidence 35889999999886 4665 455557789999999999863 443322 111223 89999999988888777
Q ss_pred ccCCCcccCCCCccEEeEecCCCccee
Q 046857 230 CNFTGNIIEMPMLWSLTIENCPDMETF 256 (439)
Q Consensus 230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~ 256 (439)
+.... ..+++|+.|++.++ .+..+
T Consensus 188 ~~~~~--~~l~~L~~L~L~~n-~l~~~ 211 (452)
T 3zyi_A 188 SEGAF--EGLFNLKYLNLGMC-NIKDM 211 (452)
T ss_dssp CTTTT--TTCTTCCEEECTTS-CCSSC
T ss_pred Chhhc--cCCCCCCEEECCCC-ccccc
Confidence 55332 46788999999885 44443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=2.2e-16 Score=147.97 Aligned_cols=246 Identities=12% Similarity=0.009 Sum_probs=164.0
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.+++|++|+++++ ++..++. ..+..+++|++|++++| .+..++. +..+++|++|++++|.+....
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----------- 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELL----------- 96 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEE-----------
T ss_pred cCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCcccccc-----------
Confidence 4679999999993 3343321 12667999999999997 4554444 788999999999996544221
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
..++|++|+++++. +..++. ..+++|++|+++++ .++...+ ..+..+++|++|+++++. +..+....
T Consensus 97 ---~~~~L~~L~l~~n~-l~~~~~------~~~~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 163 (317)
T 3o53_A 97 ---VGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANN-KITMLRD-LDEGCRSRVQYLDLKLNE-IDTVNFAE 163 (317)
T ss_dssp ---ECTTCCEEECCSSC-CSEEEE------CCCSSCEEEECCSS-CCCSGGG-BCTGGGSSEEEEECTTSC-CCEEEGGG
T ss_pred ---CCCCcCEEECCCCc-cCCcCc------cccCCCCEEECCCC-CCCCccc-hhhhccCCCCEEECCCCC-CCcccHHH
Confidence 24789999999765 554433 24788999999886 5665433 337788999999999863 43322110
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCccee
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEY 279 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~ 279 (439)
+ ...+ ++|++|+++++. ++.++.. ..+++|+.|++.++ .+..+++.
T Consensus 164 -~------~~~l-~~L~~L~L~~N~-l~~~~~~----~~l~~L~~L~Ls~N-~l~~l~~~-------------------- 209 (317)
T 3o53_A 164 -L------AASS-DTLEHLNLQYNF-IYDVKGQ----VVFAKLKTLDLSSN-KLAFMGPE-------------------- 209 (317)
T ss_dssp -G------GGGT-TTCCEEECTTSC-CCEEECC----CCCTTCCEEECCSS-CCCEECGG--------------------
T ss_pred -H------hhcc-CcCCEEECCCCc-Ccccccc----cccccCCEEECCCC-cCCcchhh--------------------
Confidence 0 0113 899999999984 5554322 25799999999985 45554322
Q ss_pred eeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCc-ccccCCCccCCCcceEEEcc
Q 046857 280 FLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKL-QKLVPPSWHLENLWGLQVSK 358 (439)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~ 358 (439)
...+++|+.|+++++ .++.++.. +. .+++|+.|++++++.. ..++..+..+++|+.+++.+
T Consensus 210 -------------~~~l~~L~~L~L~~N-~l~~l~~~-~~---~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 210 -------------FQSAAGVTWISLRNN-KLVLIEKA-LR---FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp -------------GGGGTTCSEEECTTS-CCCEECTT-CC---CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------------hcccCcccEEECcCC-cccchhhH-hh---cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 335567788887775 45555432 22 6678888888877655 34555566777788877776
Q ss_pred CCCcccc
Q 046857 359 CHGLINV 365 (439)
Q Consensus 359 c~~l~~l 365 (439)
++.++..
T Consensus 272 ~~~l~~~ 278 (317)
T 3o53_A 272 VKKLTGQ 278 (317)
T ss_dssp HHHHHSS
T ss_pred chhccCC
Confidence 6555544
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=142.66 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=129.7
Q ss_pred cccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 9 PNSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
.++|++|++++|. ++.++. .+. .+++|++|+++++ ++..+.. ..+..+++|++|++++| .++.+|..
T Consensus 51 ~~~L~~L~l~~n~-i~~~~~~~~~--------~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 51 TEAVKSLDLSNNR-ITYISNSDLQ--------RCVNLQALVLTSN-GINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTT--------TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred cccCcEEECCCCc-CcccCHHHhc--------cCCCCCEEECCCC-ccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHh
Confidence 4589999999986 555554 333 5899999999994 4444322 22678999999999996 56777765
Q ss_pred -CcCccCccceeecCceeeecCcCchhhhhhhh--hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 88 -IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE--EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 88 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
++.+++|++|+++++.+. .++. .+..+++|++|+++++..+..++... + ..+++|++|+++++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~----------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~--~~l~~L~~L~l~~n- 184 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYK----------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-F--AGLTFLEELEIDAS- 184 (353)
T ss_dssp HHTTCTTCSEEECTTCCCS----------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-T--TTCCEEEEEEEEET-
T ss_pred HhCCCccCCEEECCCCCCc----------ccCchhhhccCCCCcEEECCCCccccccCHHH-c--cCCCCCCEEECCCC-
Confidence 788999999999995433 3333 35578999999999886677664433 2 36899999999987
Q ss_pred ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857 165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
.++...|.. +..+++|++|+++++. +..++... .. .+++|+.|+++++.
T Consensus 185 ~l~~~~~~~-l~~l~~L~~L~l~~n~-l~~~~~~~--------~~-~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 185 DLQSYEPKS-LKSIQNVSHLILHMKQ-HILLLEIF--------VD-VTSSVECLELRDTD 233 (353)
T ss_dssp TCCEECTTT-TTTCSEEEEEEEECSC-STTHHHHH--------HH-HTTTEEEEEEESCB
T ss_pred CcCccCHHH-HhccccCCeecCCCCc-cccchhhh--------hh-hcccccEEECCCCc
Confidence 466544554 8889999999999874 44433210 01 13899999999873
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=1.7e-14 Score=134.48 Aligned_cols=229 Identities=16% Similarity=0.178 Sum_probs=113.4
Q ss_pred CCccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCC
Q 046857 68 PSLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQA 146 (439)
Q Consensus 68 ~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 146 (439)
++|++|+++++ .++.+|.. +..+++|++|+++++.+...+. .+..+..+++|++|+++++. +..++...
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~- 97 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC-------CSQSDFGTTSLKYLDLSFNG-VITMSSNF- 97 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEE-------EEHHHHSCSCCCEEECCSCS-EEEEEEEE-
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccC-------cccccccccccCEEECCCCc-cccChhhc-
Confidence 45555555553 34444443 3455555555555533221110 11122235666666666443 33333221
Q ss_pred CCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccc
Q 046857 147 LPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKL 226 (439)
Q Consensus 147 l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 226 (439)
..+++|++|+++++ .++...+...+..+++|++|+++++......+. .+..+ ++|++|+++++.-.
T Consensus 98 ---~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l-~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 98 ---LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---------IFNGL-SSLEVLKMAGNSFQ 163 (306)
T ss_dssp ---ETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---------TTTTC-TTCCEEECTTCEEG
T ss_pred ---CCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchh---------hcccC-cCCCEEECCCCccc
Confidence 24566666666664 333322212355566666666665532111110 11112 66666666665322
Q ss_pred c-ccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeec
Q 046857 227 K-RFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLS 305 (439)
Q Consensus 227 ~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 305 (439)
. .++... ..+++|+.|+++++ .+...++. ....+++|+.|+++
T Consensus 164 ~~~~~~~~---~~l~~L~~L~Ls~n-~l~~~~~~--------------------------------~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 164 ENFLPDIF---TELRNLTFLDLSQC-QLEQLSPT--------------------------------AFNSLSSLQVLNMS 207 (306)
T ss_dssp GGEECSCC---TTCTTCCEEECTTS-CCCEECTT--------------------------------TTTTCTTCCEEECT
T ss_pred cccchhHH---hhCcCCCEEECCCC-CcCCcCHH--------------------------------HhcCCCCCCEEECC
Confidence 2 122222 25667777777664 33333222 12345667777776
Q ss_pred CCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCC-CcceEEEccCC
Q 046857 306 GLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLE-NLWGLQVSKCH 360 (439)
Q Consensus 306 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~c~ 360 (439)
++. ++.+....+. .+++|++|+++++......+..+..++ +|++|++++++
T Consensus 208 ~N~-l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 208 HNN-FFSLDTFPYK---CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TSC-CSBCCSGGGT---TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCc-cCccChhhcc---CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 642 3333322222 567788888877754444555566664 78888887754
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=8.3e-15 Score=136.50 Aligned_cols=237 Identities=17% Similarity=0.147 Sum_probs=130.9
Q ss_pred hhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc--cchhHHhhccccceeeecccc
Q 046857 113 TIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA--IPANLLRCLNNLARLEVRNCD 190 (439)
Q Consensus 113 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~~~ 190 (439)
.+..+|..+ .++|++|+++++. +..++.+. + ..+++|++|+++++ .++.. .+.. +..+++|++|+++++.
T Consensus 18 ~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 18 GLTSVPTGI--PSSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNG 89 (306)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCS
T ss_pred CcccCCCCC--CCCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCc
Confidence 344455433 3689999998665 55655432 1 36889999999886 34421 1343 5668999999999863
Q ss_pred ccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCC
Q 046857 191 SLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKE 270 (439)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 270 (439)
+..++. . +..+ ++|++|+++++. +..++... ....+++|+.|++.++. +....+..
T Consensus 90 -i~~l~~--~-------~~~l-~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~---------- 145 (306)
T 2z66_A 90 -VITMSS--N-------FLGL-EQLEHLDFQHSN-LKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFNGI---------- 145 (306)
T ss_dssp -EEEEEE--E-------EETC-TTCCEEECTTSE-EESSTTTT-TTTTCTTCCEEECTTSC-CEECSTTT----------
T ss_pred -cccChh--h-------cCCC-CCCCEEECCCCc-ccccccch-hhhhccCCCEEECCCCc-CCccchhh----------
Confidence 333322 1 1123 889999998863 44443211 22467889999988853 43332221
Q ss_pred CCccCcceeeeeccccccccccccccCccceEeecCCCCcee-ccccCCccccccCCcceEEeecCCCcccccCCCccCC
Q 046857 271 PQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQH-LWKENDESNKVFANLERLEISECSKLQKLVPPSWHLE 349 (439)
Q Consensus 271 L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 349 (439)
...+++|+.|+++++. +.. .....+. .+++|++|+++++..-...+..+..++
T Consensus 146 ----------------------~~~l~~L~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 146 ----------------------FNGLSSLEVLKMAGNS-FQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp ----------------------TTTCTTCCEEECTTCE-EGGGEECSCCT---TCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ----------------------cccCcCCCEEECCCCc-cccccchhHHh---hCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 2234566666665542 221 1111122 556666666666532222244455666
Q ss_pred CcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEec-cccEEecCCC
Q 046857 350 NLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFG-KLRYLELDCL 417 (439)
Q Consensus 350 ~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~-~L~~l~l~~c 417 (439)
+|++|+++++ .++.+ +...+..+++|+.|+++++ .+...... .+..++ +|++|+++++
T Consensus 200 ~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 200 SLQVLNMSHN-NFFSL-DTFPYKCLNSLQVLDYSLN-HIMTSKKQ-------ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TCCEEECTTS-CCSBC-CSGGGTTCTTCCEEECTTS-CCCBCSSS-------SCCCCCTTCCEEECTTC
T ss_pred CCCEEECCCC-ccCcc-ChhhccCcccCCEeECCCC-CCcccCHH-------HHHhhhccCCEEEccCC
Confidence 6666666664 35554 2222445666666666666 33332211 344443 6666666664
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=4.8e-17 Score=160.65 Aligned_cols=349 Identities=17% Similarity=0.104 Sum_probs=203.6
Q ss_pred CCccccCceEEEccccccce----eccccccccccccccccccceeeccccccccccccccCccCCC----CccEEeecc
Q 046857 6 VGIPNSLVNLNVSYCEKIEE----IIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFP----SLERVSMTR 77 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----~L~~L~l~~ 77 (439)
+..+++|++|++++|..-.. ++..+. .+++|++|+++++ .+.+.........++ +|++|++++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~--------~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALR--------VNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHH--------TCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHH--------hCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccC
Confidence 45688999999999973322 222222 4689999999994 232211111112244 799999999
Q ss_pred CCCcc-----ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhc-CCCCccEEEccCCCCceeecCCCCCC--c
Q 046857 78 CPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALP--V 149 (439)
Q Consensus 78 c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~--~ 149 (439)
|. +. .++..+..+++|++|+++++.+.. .....+...+. ..++|++|+++++. +....... ++ .
T Consensus 95 n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-----~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-l~~~l 166 (461)
T 1z7x_W 95 CC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGD-----AGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP-LASVL 166 (461)
T ss_dssp SC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHH-----HHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH-HHHHH
T ss_pred CC-CCHHHHHHHHHHHccCCceeEEECCCCcCch-----HHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH-HHHHH
Confidence 85 44 467778899999999999965331 12233333322 35689999999775 33211000 11 0
Q ss_pred CccCCccEEEeccccccccccchhHHh----hccccceeeeccccccchhccccccccccCcccccccccceEecCCccc
Q 046857 150 RFFNYLAELEVDYCTNMSSAIPANLLR----CLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK 225 (439)
Q Consensus 150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 225 (439)
..+++|++|+++++. +++..+..+.. ..++|++|++++|. +..... ......+... ++|++|+++++.
T Consensus 167 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~----~~l~~~l~~~-~~L~~L~Ls~n~- 238 (461)
T 1z7x_W 167 RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNC----RDLCGIVASK-ASLRELALGSNK- 238 (461)
T ss_dssp HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHH----HHHHHHHHHC-TTCCEEECCSSB-
T ss_pred hhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHH----HHHHHHHHhC-CCccEEeccCCc-
Confidence 246899999999875 55433333222 24599999999884 332100 0000011123 899999999884
Q ss_pred ccccccC---CCcccCCCCccEEeEecCCCcceecc---ccccccccCCCCC--CccCcceeeeecccccccccc-cccc
Q 046857 226 LKRFCNF---TGNIIEMPMLWSLTIENCPDMETFIS---NSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDE-KVAF 296 (439)
Q Consensus 226 l~~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~-~~~~ 296 (439)
++..... ......+++|+.|++.+| .+..... ......+++|++| +.+.+.+..+ ...... ....
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-----~~l~~~l~~~~ 312 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-----RLLCETLLEPG 312 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-----HHHHHHHTSTT
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-----HHHHHHhccCC
Confidence 3332100 001125789999999997 4544211 1123457888888 5555543110 000000 0122
Q ss_pred CccceEeecCCCCceeccccCC-ccccccCCcceEEeecCCCcccc-cCCC----c-cCCCcceEEEccCCCccc----c
Q 046857 297 PQLRKLRLSGLHKVQHLWKEND-ESNKVFANLERLEISECSKLQKL-VPPS----W-HLENLWGLQVSKCHGLIN----V 365 (439)
Q Consensus 297 ~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~~l~~l-~~~~----~-~l~~L~~L~l~~c~~l~~----l 365 (439)
++|+.|++++|. ++......+ .....+++|++|+++++. ++.. +..+ . ..++|++|++++| ++++ .
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 699999999875 443211100 111156899999999984 4432 2211 1 2679999999997 4664 2
Q ss_pred cChhHHhhccccceEEEcccccchh
Q 046857 366 LTLSASKNLVNLGRMKIVDCKMMEE 390 (439)
Q Consensus 366 ~p~~~~~~l~~L~~L~l~~c~~l~~ 390 (439)
++. .+..+++|+.|++++| .+..
T Consensus 390 l~~-~l~~~~~L~~L~l~~N-~i~~ 412 (461)
T 1z7x_W 390 LAA-TLLANHSLRELDLSNN-CLGD 412 (461)
T ss_dssp HHH-HHHHCCCCCEEECCSS-SCCH
T ss_pred HHH-HHHhCCCccEEECCCC-CCCH
Confidence 244 3456899999999998 4443
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=5.6e-14 Score=125.96 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=30.0
Q ss_pred CCcceEEeecCCCcccccCC-CccC-CCcceEEEccCCCcccccChhHHhhccccceEEEcccc
Q 046857 325 ANLERLEISECSKLQKLVPP-SWHL-ENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCK 386 (439)
Q Consensus 325 ~~L~~L~l~~c~~l~~l~~~-~~~l-~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~ 386 (439)
++|++|++++++.++.++.. +..+ ++|++|++++ ++++.+ |.. .+++|+.|++.++.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l-~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTAL-PSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCC-CCT---TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccC-Chh---HhccCceeeccCcc
Confidence 45556666555445555432 3345 6666666665 345554 332 45566666666553
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=2.7e-13 Score=124.83 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=43.2
Q ss_pred cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhcc
Q 046857 296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLV 375 (439)
Q Consensus 296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~ 375 (439)
+++|+.|+++++ .++.+....+. .+++|++|+++++......+..+..+++|++|+++++ +++.+ +...+..++
T Consensus 152 l~~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~ 225 (285)
T 1ozn_A 152 LGNLTHLFLHGN-RISSVPERAFR---GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLR 225 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCT
T ss_pred CCCccEEECCCC-cccccCHHHhc---CccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcC-CHHHcccCc
Confidence 344555555443 23333322222 4556666666655432233455556666666666664 45554 434445566
Q ss_pred ccceEEEccc
Q 046857 376 NLGRMKIVDC 385 (439)
Q Consensus 376 ~L~~L~l~~c 385 (439)
+|+.|+++++
T Consensus 226 ~L~~L~l~~N 235 (285)
T 1ozn_A 226 ALQYLRLNDN 235 (285)
T ss_dssp TCCEEECCSS
T ss_pred ccCEEeccCC
Confidence 6666666655
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=4.9e-15 Score=139.92 Aligned_cols=87 Identities=20% Similarity=0.153 Sum_probs=42.0
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHhh
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASKN 373 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~ 373 (439)
.+++|+.|++++|..++......+. .+++|++|++++|..+.. ....+..+++|++|++++| +.+ ..+..
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~----~~~~~ 290 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQEFF---QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPD----GTLQL 290 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGG---GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCT----TCHHH
T ss_pred hCCCCCEEeCCCCCcCCHHHHHHHh---CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCH----HHHHH
Confidence 3445555555555433322222122 456666666666653321 1123456777777777776 322 11222
Q ss_pred c-cccceEEEcccccchhh
Q 046857 374 L-VNLGRMKIVDCKMMEEI 391 (439)
Q Consensus 374 l-~~L~~L~l~~c~~l~~~ 391 (439)
+ .++..|++.++ .++..
T Consensus 291 l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 291 LKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp HHHHSTTSEESCC-CSCCT
T ss_pred HHhhCcceEEecc-cCccc
Confidence 2 23555566544 55444
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=1.4e-13 Score=130.78 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=112.1
Q ss_pred CCCccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCC
Q 046857 67 FPSLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHG 144 (439)
Q Consensus 67 l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~ 144 (439)
.+++++|+++++ +++.+|.+ +..+++|++|++++|.+. +.++. .+.+++++.++.+.++..+..++.+
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~---------~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVL---------EVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTC---------CEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCC---------CccChhHhhcchhhhhhhcccCCcccccCch
Confidence 356777777774 56666653 566677777777663321 11111 1224555555444444445554433
Q ss_pred CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857 145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
. + ..+++|+.|++.++ .++.. +...+....++..+++.+++.+..++.-. .......++.|+++++
T Consensus 99 ~-f--~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~~--------f~~~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 99 A-F--QNLPNLQYLLISNT-GIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNS--------FVGLSFESVILWLNKN- 164 (350)
T ss_dssp S-B--CCCTTCCEEEEEEE-CCSSC-CCCTTCCBSSCEEEEEESCTTCCEECTTS--------STTSBSSCEEEECCSS-
T ss_pred h-h--hhcccccccccccc-ccccC-Cchhhcccchhhhhhhccccccccccccc--------hhhcchhhhhhccccc-
Confidence 2 1 24566666666554 33332 22223334455555555554444432200 0001134555555554
Q ss_pred cccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEee
Q 046857 225 KLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRL 304 (439)
Q Consensus 225 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 304 (439)
.++.++.... ..++|+.+.+.+++.+..++.. ....+++|+.|++
T Consensus 165 ~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~--------------------------------~f~~l~~L~~LdL 209 (350)
T 4ay9_X 165 GIQEIHNSAF---NGTQLDELNLSDNNNLEELPND--------------------------------VFHGASGPVILDI 209 (350)
T ss_dssp CCCEECTTSS---TTEEEEEEECTTCTTCCCCCTT--------------------------------TTTTEECCSEEEC
T ss_pred cccCCChhhc---cccchhHHhhccCCcccCCCHH--------------------------------HhccCcccchhhc
Confidence 3444433332 3345555555554444444322 1234556777777
Q ss_pred cCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEc
Q 046857 305 SGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVS 357 (439)
Q Consensus 305 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 357 (439)
+++ .++.++.. .+.+|+.|.+.++..++.+|. +..+++|+.+++.
T Consensus 210 s~N-~l~~lp~~------~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 210 SRT-RIHSLPSY------GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp TTS-CCCCCCSS------SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred CCC-CcCccChh------hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 664 45555544 455666666666666666663 5566677766664
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=2.2e-13 Score=135.14 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=60.3
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL 374 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l 374 (439)
.+++|+.|+++++. ++.++.. . .+++|++|+++++ .++.+|+.+..+++|+.|+++++ .++.+ |.. +..+
T Consensus 167 ~l~~L~~L~Ls~N~-l~~~~~~--~---~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~-l~~l 236 (487)
T 3oja_A 167 SSDTLEHLNLQYNF-IYDVKGQ--V---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLI-EKA-LRFS 236 (487)
T ss_dssp GTTTCCEEECTTSC-CCEEECC--C---CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEE-CTT-CCCC
T ss_pred hCCcccEEecCCCc-ccccccc--c---cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCccc-chh-hccC
Confidence 46788889888864 5544221 1 5788999999887 46667777778889999999884 57775 553 4567
Q ss_pred cccceEEEccccc
Q 046857 375 VNLGRMKIVDCKM 387 (439)
Q Consensus 375 ~~L~~L~l~~c~~ 387 (439)
++|+.|++++++-
T Consensus 237 ~~L~~L~l~~N~l 249 (487)
T 3oja_A 237 QNLEHFDLRGNGF 249 (487)
T ss_dssp TTCCEEECTTCCB
T ss_pred CCCCEEEcCCCCC
Confidence 8889999888743
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=1e-13 Score=137.54 Aligned_cols=216 Identities=12% Similarity=0.017 Sum_probs=133.2
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.+++|++|+++++ .+..++. ..+..+++|++|++++|. +...+. ++.+++|++|++++|.+... +
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l----------~- 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQEL----------L- 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG-GGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEE----------E-
T ss_pred cCCCccEEEeeCC-cCCCCCH-HHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCC----------C-
Confidence 4567888888883 3333321 235678888888888864 443333 77788888888888554421 1
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
..++|+.|+++++. +..++. ..+++|+.|+++++ .++...|.. +..+++|++|+++++. +....+.
T Consensus 97 ---~~~~L~~L~L~~N~-l~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~- 162 (487)
T 3oja_A 97 ---VGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANN-KITMLRDLD-EGCRSRVQYLDLKLNE-IDTVNFA- 162 (487)
T ss_dssp ---ECTTCCEEECCSSC-CCCEEE------CCCSSCEEEECCSS-CCCSGGGBC-GGGGSSEEEEECTTSC-CCEEEGG-
T ss_pred ---CCCCcCEEECcCCc-CCCCCc------cccCCCCEEECCCC-CCCCCCchh-hcCCCCCCEEECCCCC-CCCcChH-
Confidence 23678888888665 443332 24677888888776 455543433 6678888888888763 3322110
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcc
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLE 277 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~ 277 (439)
.+. ..+ ++|+.|+++++. +..++.. ..+++|+.|+++++ .+..+++. ...+++|+.| +.+.+.
T Consensus 163 ~l~------~~l-~~L~~L~Ls~N~-l~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 163 ELA------ASS-DTLEHLNLQYNF-IYDVKGQ----VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp GGG------GGT-TTCCEEECTTSC-CCEEECC----CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred HHh------hhC-CcccEEecCCCc-ccccccc----ccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCcCc
Confidence 000 013 788888888874 4444221 25788888888884 56666544 4567777777 566666
Q ss_pred eeeeeccccccccccccccCccceEeecCCCC
Q 046857 278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHK 309 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 309 (439)
+++. ....+++|+.|++++++-
T Consensus 228 ~lp~----------~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 228 LIEK----------ALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECT----------TCCCCTTCCEEECTTCCB
T ss_pred ccch----------hhccCCCCCEEEcCCCCC
Confidence 5432 244567888888887653
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.50 E-value=2.1e-13 Score=125.58 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=84.6
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhh-hh
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKC-YE 119 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~ 119 (439)
++|++|++++ .++..++. ..+..+++|++|+++++ .+..+ |..+..+++|++|+++++. .+..+ +.
T Consensus 32 ~~l~~L~l~~-n~i~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~---------~l~~~~~~ 99 (285)
T 1ozn_A 32 AASQRIFLHG-NRISHVPA-ASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA---------QLRSVDPA 99 (285)
T ss_dssp TTCSEEECTT-SCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT---------TCCCCCTT
T ss_pred CCceEEEeeC-CcCCccCH-HHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC---------CccccCHH
Confidence 4555555555 22222211 11344555666666554 33333 4445555566666655522 11111 22
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
.+..+++|++|+++++. +..+.... ...+++|++|+++++ .++. ++...+..+++|++|+++++ .+..++.
T Consensus 100 ~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~-- 170 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCG-LQELGPGL---FRGLAALQYLYLQDN-ALQA-LPDDTFRDLGNLTHLFLHGN-RISSVPE-- 170 (285)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCEECT--
T ss_pred HhcCCcCCCEEECCCCc-CCEECHhH---hhCCcCCCEEECCCC-cccc-cCHhHhccCCCccEEECCCC-cccccCH--
Confidence 23345556666665443 22221111 123555666666554 2333 23233455556666666554 2222211
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP 271 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 271 (439)
..+..+ ++|+.|+++++.-....+... ..+++|+.|++.++ .+..+++. ....+++|+.|
T Consensus 171 ------~~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L 230 (285)
T 1ozn_A 171 ------RAFRGL-HSLDRLLLHQNRVAHVHPHAF---RDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYL 230 (285)
T ss_dssp ------TTTTTC-TTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEE
T ss_pred ------HHhcCc-cccCEEECCCCcccccCHhHc---cCcccccEeeCCCC-cCCcCCHH-HcccCcccCEE
Confidence 001112 556666665553211112222 24556666666553 33333221 12345555555
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=2e-14 Score=135.76 Aligned_cols=111 Identities=12% Similarity=0.177 Sum_probs=48.7
Q ss_pred cCCCCccEEeeccCCCcc-c-cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee--
Q 046857 65 LEFPSLERVSMTRCPNMK-T-FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE-- 140 (439)
Q Consensus 65 ~~l~~L~~L~l~~c~~l~-~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-- 140 (439)
..+++|++|++++|. +. . ++..+..+++|++|++++|.+ ....+..+..+++|++|++++|..+..
T Consensus 90 ~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l---------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 90 FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRL---------SDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159 (336)
T ss_dssp CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBC---------CHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCccc---------CHHHHHHHhcCCCCCEEECCCCCCCCHHH
Confidence 345555555555543 22 1 444445555555555555221 112333334455555555555433331
Q ss_pred ecCCCCCCcCccCCccEEEeccccccccccchhHHhhcc-ccceeeeccc
Q 046857 141 IWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLN-NLARLEVRNC 189 (439)
Q Consensus 141 i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~-~L~~L~l~~~ 189 (439)
++... ..+++|++|++++|..+++......+..++ +|++|++++|
T Consensus 160 l~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 160 LQTLL----SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp HHHHH----HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred HHHHH----hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 11100 234555555555553343321112244455 5555555554
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=2e-13 Score=122.40 Aligned_cols=204 Identities=13% Similarity=0.085 Sum_probs=124.9
Q ss_pred CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857 153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF 232 (439)
Q Consensus 153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 232 (439)
++|++|+++++ +++.. +...+..+++|++|+++++..++.++.. .+..+ ++|++|++++|..++.++..
T Consensus 31 ~~l~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~--------~f~~l-~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESH--------SFYNL-SKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESC-CCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTT--------TEESC-TTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCC-cceEE-CHHHccCCCCCcEEeCCCCCCcceeCHh--------HcCCC-cCCcEEECCCCCCeeEcCHH
Confidence 35666666554 34432 3333555666666666655334333210 00112 56666666654455544322
Q ss_pred CCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccc---eEeecCCCC
Q 046857 233 TGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLR---KLRLSGLHK 309 (439)
Q Consensus 233 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~ 309 (439)
. ...+++|+.|++.++. +..++. ...+++|+ .|++++++.
T Consensus 100 ~--f~~l~~L~~L~l~~n~-l~~lp~----------------------------------~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 100 A--LKELPLLKFLGIFNTG-LKMFPD----------------------------------LTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp S--EECCTTCCEEEEEEEC-CCSCCC----------------------------------CTTCCBCCSEEEEEEESCTT
T ss_pred H--hCCCCCCCEEeCCCCC-Cccccc----------------------------------cccccccccccEEECCCCcc
Confidence 2 1356777777777642 332211 12333444 888887656
Q ss_pred ceeccccCCccccccCCcc-eEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhc-cccceEEEccccc
Q 046857 310 VQHLWKENDESNKVFANLE-RLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNL-VNLGRMKIVDCKM 387 (439)
Q Consensus 310 l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l-~~L~~L~l~~c~~ 387 (439)
++.++...+. .+++|+ +|+++++ .++.+|......++|++|++++++.++.+ +...+..+ ++|+.|+++++ .
T Consensus 143 l~~i~~~~~~---~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N-~ 216 (239)
T 2xwt_C 143 MTSIPVNAFQ---GLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQT-S 216 (239)
T ss_dssp CCEECTTTTT---TTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTC-C
T ss_pred hhhcCccccc---chhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCC-c
Confidence 7777655444 688999 9999886 46678877666689999999997668887 54456678 99999999997 6
Q ss_pred chhhccccccccCCCceEeccccEEecCCCCCc
Q 046857 388 MEEIIQSQVGEETEDCIVFGKLRYLELDCLPSL 420 (439)
Q Consensus 388 l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~~l 420 (439)
++.++. ..+++|+.|+++++..|
T Consensus 217 l~~l~~----------~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 217 VTALPS----------KGLEHLKELIARNTWTL 239 (239)
T ss_dssp CCCCCC----------TTCTTCSEEECTTC---
T ss_pred cccCCh----------hHhccCceeeccCccCC
Confidence 666643 25789999999988654
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=4.8e-13 Score=126.99 Aligned_cols=243 Identities=15% Similarity=0.128 Sum_probs=151.4
Q ss_pred cEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCc
Q 046857 71 ERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPV 149 (439)
Q Consensus 71 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~ 149 (439)
+.++-++ .+++.+|.++ .+++++|++++ +.++.++.. +.++++|++|+++++...+.++.+. .
T Consensus 12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~----------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f 75 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVL----------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---F 75 (350)
T ss_dssp TEEEEES-TTCCSCCTTC--CTTCSEEEEES----------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---B
T ss_pred CEEEecC-CCCCccCcCc--CCCCCEEEccC----------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---h
Confidence 4555555 4677888765 35788888887 334444443 4567788888888766555554432 1
Q ss_pred CccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccccccc
Q 046857 150 RFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRF 229 (439)
Q Consensus 150 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 229 (439)
..++++.++.+.++.+++.+ +...+..+++|++|+++++ .+..++...... . .++..|++.++..+..+
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~--------~-~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYI-NPEAFQNLPNLQYLLISNT-GIKHLPDVHKIH--------S-LQKVLLDIQDNINIHTI 144 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEE-CTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCC--------B-SSCEEEEEESCTTCCEE
T ss_pred hcchhhhhhhcccCCccccc-Cchhhhhcccccccccccc-ccccCCchhhcc--------c-chhhhhhhccccccccc
Confidence 24566666555555566654 3334677777888887765 333333211111 1 44555666555555554
Q ss_pred ccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCC
Q 046857 230 CNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHK 309 (439)
Q Consensus 230 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 309 (439)
+.... ......++.|++.++ .++.++.. ....++|+.+.+.++..
T Consensus 145 ~~~~f-~~~~~~l~~L~L~~N-~i~~i~~~---------------------------------~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 145 ERNSF-VGLSFESVILWLNKN-GIQEIHNS---------------------------------AFNGTQLDELNLSDNNN 189 (350)
T ss_dssp CTTSS-TTSBSSCEEEECCSS-CCCEECTT---------------------------------SSTTEEEEEEECTTCTT
T ss_pred cccch-hhcchhhhhhccccc-cccCCChh---------------------------------hccccchhHHhhccCCc
Confidence 43321 111234555555552 34333221 22345889999988888
Q ss_pred ceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHhhccccceEEEcc
Q 046857 310 VQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVD 384 (439)
Q Consensus 310 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~ 384 (439)
++.++.+.+. .+++|+.|+++++ .++.+|.. .+.+|+.|.+.+++.++.+ |. ...+++|+.+++.+
T Consensus 190 l~~i~~~~f~---~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~l-P~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVFH---GASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKL-PT--LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTTT---TEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCC-CC--TTTCCSCCEEECSC
T ss_pred ccCCCHHHhc---cCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcC-CC--chhCcChhhCcCCC
Confidence 8888766555 7889999999887 68888764 4788899998888889887 54 46788999998854
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.46 E-value=5.3e-13 Score=123.17 Aligned_cols=202 Identities=18% Similarity=0.165 Sum_probs=143.3
Q ss_pred CCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc
Q 046857 5 SVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF 84 (439)
Q Consensus 5 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 84 (439)
+++++++++++++.++. ++.+|..+ .++++.|++++. .+..+.. ..+..+++|++|+++++ .++.+
T Consensus 5 ~~~~l~~l~~l~~~~~~-l~~ip~~~----------~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRN-LTALPPDL----------PKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp EEECSTTCCEEECTTSC-CSSCCSCC----------CTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTS-CCCEE
T ss_pred cccccCCccEEECCCCC-CCcCCCCC----------CCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCC-ccCcc
Confidence 45678889999998864 66676542 468999999983 3333322 23677999999999996 57777
Q ss_pred ccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 85 SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
+.. +.+++|++|+++++. +..+|..+..+++|+.|+++++. +..++.+. ...+++|+.|+++++
T Consensus 71 ~~~-~~l~~L~~L~Ls~N~----------l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~---~~~l~~L~~L~L~~N- 134 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHNQ----------LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGA---LRGLGELQELYLKGN- 134 (290)
T ss_dssp ECC-SCCTTCCEEECCSSC----------CSSCCCCTTTCTTCCEEECCSSC-CCCCCSST---TTTCTTCCEEECTTS-
T ss_pred cCC-CCCCcCCEEECCCCc----------CCcCchhhccCCCCCEEECCCCc-CcccCHHH---HcCCCCCCEEECCCC-
Confidence 665 789999999999844 33455556678899999999664 65554332 136889999999886
Q ss_pred ccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccE
Q 046857 165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWS 244 (439)
Q Consensus 165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~ 244 (439)
.++. ++...+..+++|++|+++++ .+..++. + .+..+ ++|+.|+++++ .++.++.... ..++|+.
T Consensus 135 ~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~l~~-~-------~~~~l-~~L~~L~L~~N-~l~~ip~~~~---~~~~L~~ 199 (290)
T 1p9a_G 135 ELKT-LPPGLLTPTPKLEKLSLANN-NLTELPA-G-------LLNGL-ENLDTLLLQEN-SLYTIPKGFF---GSHLLPF 199 (290)
T ss_dssp CCCC-CCTTTTTTCTTCCEEECTTS-CCSCCCT-T-------TTTTC-TTCCEEECCSS-CCCCCCTTTT---TTCCCSE
T ss_pred CCCc-cChhhcccccCCCEEECCCC-cCCccCH-H-------HhcCc-CCCCEEECCCC-cCCccChhhc---ccccCCe
Confidence 5665 45565788899999999976 4544432 1 11123 88999999887 4666665554 6678899
Q ss_pred EeEecCC
Q 046857 245 LTIENCP 251 (439)
Q Consensus 245 L~l~~c~ 251 (439)
+++.+.+
T Consensus 200 l~L~~Np 206 (290)
T 1p9a_G 200 AFLHGNP 206 (290)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 9888753
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=3.6e-14 Score=132.60 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=44.5
Q ss_pred CCCCccEEeeccCCCccccccCC--cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857 66 EFPSLERVSMTRCPNMKTFSQGI--VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH 143 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~ 143 (439)
.+++|++|++++|..-..+|..+ ..+++|++|+++++.+.... ..+..++.. ..++|++|+++++. +..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~l~~~--~~~~L~~L~L~~N~-l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD---AWLAELQQW--LKPGLKVLSIAQAH-SLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS---SHHHHHHTT--CCTTCCEEEEESCS-CCCCCT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh---HHHHHHHHh--hcCCCcEEEeeCCC-CccchH
Confidence 46777777777764333566554 66777777777764433221 111111110 12566666666443 333221
Q ss_pred CCCCCcCccCCccEEEeccc
Q 046857 144 GQALPVRFFNYLAELEVDYC 163 (439)
Q Consensus 144 ~~~l~~~~~~~L~~L~l~~~ 163 (439)
.. ...+++|++|+++++
T Consensus 167 ~~---~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 167 EQ---VRVFPALSTLDLSDN 183 (312)
T ss_dssp TT---CCCCSSCCEEECCSC
T ss_pred HH---hccCCCCCEEECCCC
Confidence 11 124556666666554
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.43 E-value=8.4e-13 Score=122.97 Aligned_cols=189 Identities=16% Similarity=0.205 Sum_probs=97.9
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
.+++|++|++.+|. +..++ .+. .+++|++|+++++ .+.++ +.+..+++|++|++++| .++.++ .
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~~--------~l~~L~~L~L~~n-~i~~~---~~~~~l~~L~~L~L~~n-~l~~~~-~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GVQ--------YLNNLIGLELKDN-QITDL---APLKNLTKITELELSGN-PLKNVS-A 102 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TGG--------GCTTCCEEECCSS-CCCCC---GGGTTCCSCCEEECCSC-CCSCCG-G
T ss_pred HcCCcCEEEeeCCC-ccCch-hhh--------ccCCCCEEEccCC-cCCCC---hhHccCCCCCEEEccCC-cCCCch-h
Confidence 45666666666663 33333 122 3566666666663 23332 22556666666666665 355444 3
Q ss_pred CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857 88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS 167 (439)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~ 167 (439)
+..+++|++|++++|.+.. ++ .+..+++|++|+++++. +..++. ...+++|+.|+++++ .++
T Consensus 103 ~~~l~~L~~L~l~~n~l~~----------~~-~l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n-~l~ 164 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD----------VT-PLAGLSNLQVLYLDLNQ-ITNISP-----LAGLTNLQYLSIGNA-QVS 164 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC----------CG-GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCCEEECCSS-CCC
T ss_pred hcCCCCCCEEECCCCCCCC----------ch-hhcCCCCCCEEECCCCc-cCcCcc-----ccCCCCccEEEccCC-cCC
Confidence 5566666666666643321 11 13446666666666543 333221 124566666666665 344
Q ss_pred cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeE
Q 046857 168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTI 247 (439)
Q Consensus 168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 247 (439)
+. +. +..+++|++|+++++ .+..++.+. .+ ++|+.|+++++. +..++. ...+++|+.|++
T Consensus 165 ~~-~~--l~~l~~L~~L~l~~n-~l~~~~~l~----------~l-~~L~~L~L~~N~-l~~~~~----l~~l~~L~~L~l 224 (308)
T 1h6u_A 165 DL-TP--LANLSKLTTLKADDN-KISDISPLA----------SL-PNLIEVHLKNNQ-ISDVSP----LANTSNLFIVTL 224 (308)
T ss_dssp CC-GG--GTTCTTCCEEECCSS-CCCCCGGGG----------GC-TTCCEEECTTSC-CCBCGG----GTTCTTCCEEEE
T ss_pred CC-hh--hcCCCCCCEEECCCC-ccCcChhhc----------CC-CCCCEEEccCCc-cCcccc----ccCCCCCCEEEc
Confidence 32 22 555666666666654 333332211 12 666666666652 333321 235566666666
Q ss_pred ecC
Q 046857 248 ENC 250 (439)
Q Consensus 248 ~~c 250 (439)
.++
T Consensus 225 ~~N 227 (308)
T 1h6u_A 225 TNQ 227 (308)
T ss_dssp EEE
T ss_pred cCC
Confidence 664
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=6.1e-13 Score=124.18 Aligned_cols=203 Identities=18% Similarity=0.104 Sum_probs=108.5
Q ss_pred ccccceeecccccccc-ccccccCccCCCCccEEeeccCCCccccccCCcCc-----cCccceeecCceeeecCcCchhh
Q 046857 41 FSNLKVLILDYLPRLT-SFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVST-----PKLHEVQEEGELCRWEGNLNSTI 114 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~ 114 (439)
+++|++|+++++ ++. ..+..-.+..+++|++|+++++ .+..+|..++.+ ++|++|++++|.+.
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~--------- 162 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSL--------- 162 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCC---------
T ss_pred cCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCc---------
Confidence 567777777773 222 1111100156777777777775 455445555555 77777777774322
Q ss_pred hhhh-hhhcCCCCccEEEccCCCCceee--cCCCCCCcCccCCccEEEecccccccc--ccchhHHhhccccceeeeccc
Q 046857 115 QKCY-EEMIGFRDIQYLQLSHFPRLKEI--WHGQALPVRFFNYLAELEVDYCTNMSS--AIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 115 ~~l~-~~~~~~~~L~~L~l~~~~~l~~i--~~~~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~ 189 (439)
.++ ..+..+++|++|+++++.....+ +.. +....+++|++|+++++ .++. .++...+..+++|++|+++++
T Consensus 163 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 163 -NFSCEQVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp -CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred -cchHHHhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 222 34456777777777766533221 100 11135677777777776 3442 123334456677777777765
Q ss_pred cccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCC
Q 046857 190 DSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNK 269 (439)
Q Consensus 190 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 269 (439)
. +....+.... ..+ ++|++|+++++ .++.++... . ++|+.|+++++ .++..+. ...+++|+
T Consensus 239 ~-l~~~~~~~~~-------~~l-~~L~~L~Ls~N-~l~~ip~~~----~-~~L~~L~Ls~N-~l~~~p~---~~~l~~L~ 299 (312)
T 1wwl_A 239 S-LRDAAGAPSC-------DWP-SQLNSLNLSFT-GLKQVPKGL----P-AKLSVLDLSYN-RLDRNPS---PDELPQVG 299 (312)
T ss_dssp C-CCSSCCCSCC-------CCC-TTCCEEECTTS-CCSSCCSSC----C-SEEEEEECCSS-CCCSCCC---TTTSCEEE
T ss_pred c-CCcccchhhh-------hhc-CCCCEEECCCC-ccChhhhhc----c-CCceEEECCCC-CCCCChh---HhhCCCCC
Confidence 3 3332211111 112 67777777776 344554333 1 67777777774 4555422 34566666
Q ss_pred CC--CccCcc
Q 046857 270 EP--QKLTLE 277 (439)
Q Consensus 270 ~L--~~~~l~ 277 (439)
.| +.+.+.
T Consensus 300 ~L~L~~N~l~ 309 (312)
T 1wwl_A 300 NLSLKGNPFL 309 (312)
T ss_dssp EEECTTCTTT
T ss_pred EEeccCCCCC
Confidence 66 444444
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=2.6e-12 Score=119.67 Aligned_cols=174 Identities=17% Similarity=0.265 Sum_probs=130.3
Q ss_pred CCCCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCc
Q 046857 2 ALGSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNM 81 (439)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 81 (439)
+++.+..+++|++|++++|. +..++. +. .+++|++|+++++ ++..+ +.+..+++|++|++++| .+
T Consensus 55 ~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~--------~l~~L~~L~L~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l 119 (308)
T 1h6u_A 55 TIEGVQYLNNLIGLELKDNQ-ITDLAP-LK--------NLTKITELELSGN-PLKNV---SAIAGLQSIKTLDLTST-QI 119 (308)
T ss_dssp CCTTGGGCTTCCEEECCSSC-CCCCGG-GT--------TCCSCCEEECCSC-CCSCC---GGGTTCTTCCEEECTTS-CC
T ss_pred CchhhhccCCCCEEEccCCc-CCCChh-Hc--------cCCCCCEEEccCC-cCCCc---hhhcCCCCCCEEECCCC-CC
Confidence 45678899999999999995 555554 33 5899999999994 34444 45778999999999997 56
Q ss_pred cccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEec
Q 046857 82 KTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVD 161 (439)
Q Consensus 82 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~ 161 (439)
+.++. +..+++|++|++++|.+... +. +..+++|+.|+++++. +..++. ...+++|+.|+++
T Consensus 120 ~~~~~-l~~l~~L~~L~l~~n~l~~~----------~~-l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 120 TDVTP-LAGLSNLQVLYLDLNQITNI----------SP-LAGLTNLQYLSIGNAQ-VSDLTP-----LANLSKLTTLKAD 181 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCC----------GG-GGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECC
T ss_pred CCchh-hcCCCCCCEEECCCCccCcC----------cc-ccCCCCccEEEccCCc-CCCChh-----hcCCCCCCEEECC
Confidence 66765 78899999999999654322 11 4468999999999774 554432 2468999999999
Q ss_pred cccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857 162 YCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
++ .+++. +. +..+++|++|++++| .+..++.+. .+ ++|+.|+++++.
T Consensus 182 ~n-~l~~~-~~--l~~l~~L~~L~L~~N-~l~~~~~l~----------~l-~~L~~L~l~~N~ 228 (308)
T 1h6u_A 182 DN-KISDI-SP--LASLPNLIEVHLKNN-QISDVSPLA----------NT-SNLFIVTLTNQT 228 (308)
T ss_dssp SS-CCCCC-GG--GGGCTTCCEEECTTS-CCCBCGGGT----------TC-TTCCEEEEEEEE
T ss_pred CC-ccCcC-hh--hcCCCCCCEEEccCC-ccCcccccc----------CC-CCCCEEEccCCe
Confidence 87 56653 33 778999999999987 444443321 23 899999999874
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.37 E-value=6.8e-12 Score=114.85 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=91.7
Q ss_pred ccCceEEEccccccceecc-ccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cC
Q 046857 10 NSLVNLNVSYCEKIEEIIG-HVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QG 87 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~ 87 (439)
++|++|++++|. +..++. .+. .+++|++|+++++ .+..++. ..+..+++|++|+++++. +..++ ..
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~--------~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFF--------SFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGA 95 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTT--------TCTTCSEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCC-CCEECTTT
T ss_pred CCccEEECCCCc-ccccCHhHhc--------cccCCcEEECCCC-cCCccCH-HHccCCcCCCEEECCCCc-cCccChhh
Confidence 346666666664 333332 222 3566666666663 2332221 124456666666666643 33333 44
Q ss_pred CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee--ecCCCCCCcCccCCccEEEeccccc
Q 046857 88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE--IWHGQALPVRFFNYLAELEVDYCTN 165 (439)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--i~~~~~l~~~~~~~L~~L~l~~~~~ 165 (439)
+..+++|++|+++++.+...... .+..+++|++|+++++. +.. ++... ..+++|++|+++++ .
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~l~~n~-l~~~~l~~~~----~~l~~L~~L~Ls~N-~ 160 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENF---------PIGHLKTLKELNVAHNL-IQSFKLPEYF----SNLTNLEHLDLSSN-K 160 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTC---------CCTTCTTCCEEECCSSC-CCCCCCCGGG----GGCTTCCEEECCSS-C
T ss_pred hcCCccccEEECCCCCccccCch---------hcccCCCCCEEECcCCc-cceecCchhh----ccCCCCCEEECCCC-C
Confidence 55666666666665432221110 13345666666666443 222 11111 24566666666664 3
Q ss_pred cccccchhHHhhccccc----eeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCC
Q 046857 166 MSSAIPANLLRCLNNLA----RLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPM 241 (439)
Q Consensus 166 l~~~~~~~~~~~l~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 241 (439)
++.. +...+..+++|+ +|+++++ .+..++. ..... .+|+.|+++++. ++.++... ...+++
T Consensus 161 l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~---------~~~~~-~~L~~L~L~~n~-l~~~~~~~--~~~l~~ 225 (276)
T 2z62_A 161 IQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP---------GAFKE-IRLKELALDTNQ-LKSVPDGI--FDRLTS 225 (276)
T ss_dssp CCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECT---------TSSCS-CCEEEEECCSSC-CSCCCTTT--TTTCCS
T ss_pred CCcC-CHHHhhhhhhccccceeeecCCC-cccccCc---------cccCC-CcccEEECCCCc-eeecCHhH--hccccc
Confidence 4432 222244444444 5555543 2222211 00011 356666666653 44443322 124566
Q ss_pred ccEEeEec
Q 046857 242 LWSLTIEN 249 (439)
Q Consensus 242 L~~L~l~~ 249 (439)
|+.+++.+
T Consensus 226 L~~L~l~~ 233 (276)
T 2z62_A 226 LQKIWLHT 233 (276)
T ss_dssp CCEEECCS
T ss_pred ccEEEccC
Confidence 66666665
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.37 E-value=8.3e-12 Score=115.13 Aligned_cols=198 Identities=16% Similarity=0.089 Sum_probs=137.5
Q ss_pred CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccc
Q 046857 123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELN 202 (439)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 202 (439)
.+++++++++.++ .++.++.+ ..++++.|+++++ .++.. +...+..+++|++|+++++ .+..++..
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip~~------~~~~l~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~---- 73 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALPPD------LPKDTTILHLSEN-LLYTF-SLATLMPYTRLTQLNLDRA-ELTKLQVD---- 73 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCCSC------CCTTCCEEECTTS-CCSEE-EGGGGTTCTTCCEEECTTS-CCCEEECC----
T ss_pred ccCCccEEECCCC-CCCcCCCC------CCCCCCEEEcCCC-cCCcc-CHHHhhcCCCCCEEECCCC-ccCcccCC----
Confidence 4677888888754 35554433 3478999999886 45554 3344788899999999976 44444331
Q ss_pred cccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeee
Q 046857 203 ADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLL 282 (439)
Q Consensus 203 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~ 282 (439)
. .+++|++|+++++ .++.++... ..+++|+.|++.++ .+..+++.
T Consensus 74 ------~-~l~~L~~L~Ls~N-~l~~l~~~~---~~l~~L~~L~l~~N-~l~~l~~~----------------------- 118 (290)
T 1p9a_G 74 ------G-TLPVLGTLDLSHN-QLQSLPLLG---QTLPALTVLDVSFN-RLTSLPLG----------------------- 118 (290)
T ss_dssp ------S-CCTTCCEEECCSS-CCSSCCCCT---TTCTTCCEEECCSS-CCCCCCSS-----------------------
T ss_pred ------C-CCCcCCEEECCCC-cCCcCchhh---ccCCCCCEEECCCC-cCcccCHH-----------------------
Confidence 1 2388999999887 455665433 37788999998884 44444322
Q ss_pred ccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCC
Q 046857 283 AHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHG 361 (439)
Q Consensus 283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~ 361 (439)
....+++|+.|+++++ .++.++.+.+. .+++|+.|+++++ .++.+|... ..+++|++|+++++ +
T Consensus 119 ---------~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~ 183 (290)
T 1p9a_G 119 ---------ALRGLGELQELYLKGN-ELKTLPPGLLT---PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-S 183 (290)
T ss_dssp ---------TTTTCTTCCEEECTTS-CCCCCCTTTTT---TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred ---------HHcCCCCCCEEECCCC-CCCccChhhcc---cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-c
Confidence 1335678999998885 46666554333 6789999999887 567777665 57999999999984 5
Q ss_pred cccccChhHHhhccccceEEEcccc
Q 046857 362 LINVLTLSASKNLVNLGRMKIVDCK 386 (439)
Q Consensus 362 l~~l~p~~~~~~l~~L~~L~l~~c~ 386 (439)
++.+ |..+ ...++|+.+++.+++
T Consensus 184 l~~i-p~~~-~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 LYTI-PKGF-FGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCC-CTTT-TTTCCCSEEECCSCC
T ss_pred CCcc-Chhh-cccccCCeEEeCCCC
Confidence 8876 6644 456789999998753
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.33 E-value=2.2e-11 Score=111.15 Aligned_cols=198 Identities=18% Similarity=0.184 Sum_probs=124.7
Q ss_pred cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-Cc
Q 046857 11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IV 89 (439)
Q Consensus 11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~ 89 (439)
+.+.++++++. ++.+|..+ .++++.|+++++ ++..++. ..+..+++|++|+++++ .+..+|.. +.
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~----------~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNI----------PADTKKLDLQSN-KLSSLPS-KAFHRLTKLRLLYLNDN-KLQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCC----------CTTCSEEECCSS-CCSCCCT-TSSSSCTTCCEEECCSS-CCSCCCTTTTS
T ss_pred CCCEEEccCCC-CCccCCCC----------CCCCCEEECcCC-CCCeeCH-HHhcCCCCCCEEECCCC-ccCeeChhhhc
Confidence 46677777764 55565532 357888888883 3444322 13667888999999885 56666655 36
Q ss_pred CccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857 90 STPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS 168 (439)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~ 168 (439)
.+++|++|+++++.+. .++. .+..+++|++|+++++. +..++... ...+++|++|+++++ .++.
T Consensus 83 ~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~ 147 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQ----------ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRV---FDSLTKLTYLSLGYN-ELQS 147 (270)
T ss_dssp SCTTCCEEECCSSCCC----------CCCTTTTTTCSSCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC
T ss_pred CCCCCCEEECCCCcCC----------cCCHhHcccccCCCEEECCCCc-cCeeCHHH---hCcCcCCCEEECCCC-cCCc
Confidence 7888888888884433 2222 23467888888888654 44443322 135788888888886 4555
Q ss_pred ccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEe
Q 046857 169 AIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIE 248 (439)
Q Consensus 169 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 248 (439)
++...+..+++|++|+++++ .+..++. ..+..+ ++|++|+++++ .++.++... ...+++|+.|++.
T Consensus 148 -~~~~~~~~l~~L~~L~L~~n-~l~~~~~--------~~~~~l-~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 148 -LPKGVFDKLTSLKELRLYNN-QLKRVPE--------GAFDKL-TELKTLKLDNN-QLKRVPEGA--FDSLEKLKMLQLQ 213 (270)
T ss_dssp -CCTTTTTTCTTCCEEECCSS-CCSCCCT--------TTTTTC-TTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECC
T ss_pred -cCHhHccCCcccceeEecCC-cCcEeCh--------hHhccC-CCcCEEECCCC-cCCcCCHHH--hccccCCCEEEec
Confidence 45454677888888888876 3433322 011123 78888888876 455544332 1357788888887
Q ss_pred cCC
Q 046857 249 NCP 251 (439)
Q Consensus 249 ~c~ 251 (439)
+++
T Consensus 214 ~N~ 216 (270)
T 2o6q_A 214 ENP 216 (270)
T ss_dssp SSC
T ss_pred CCC
Confidence 753
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.33 E-value=3.6e-12 Score=116.47 Aligned_cols=175 Identities=15% Similarity=0.183 Sum_probs=89.7
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh-
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE- 119 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~- 119 (439)
+++|+.|++.++ .+.++ +.+..+++|++|++++|. +..++ .+..+++|++|++++|.+. .++.
T Consensus 40 l~~L~~L~l~~~-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~----------~~~~~ 103 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSV---QGIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQ----------SLPNG 103 (272)
T ss_dssp HTTCCEEECTTS-CCCCC---TTGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCC----------CCCTT
T ss_pred ccceeeeeeCCC-Ccccc---cccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccC----------ccChh
Confidence 556666666662 22222 335556666666666643 44443 4556666666666664322 1111
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
.+..+++|++|+++++. +..++... ...+++|++|+++++ .++. ++...+..+++|++|++++| .+..++.
T Consensus 104 ~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~-- 174 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQ-LQSLPDGV---FDKLTNLTYLNLAHN-QLQS-LPKGVFDKLTNLTELDLSYN-QLQSLPE-- 174 (272)
T ss_dssp TTTTCTTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCT--
T ss_pred HhcCCcCCCEEECCCCc-CCccCHHH---hccCCCCCEEECCCC-ccCc-cCHHHhccCccCCEEECCCC-CcCccCH--
Confidence 12346666677766544 33333221 124566777777665 4444 33333556667777777765 2332221
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
..+..+ ++|+.|+++++. +..++... ...+++|+.|++.++
T Consensus 175 ------~~~~~l-~~L~~L~L~~N~-l~~~~~~~--~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 175 ------GVFDKL-TQLKDLRLYQNQ-LKSVPDGV--FDRLTSLQYIWLHDN 215 (272)
T ss_dssp ------TTTTTC-TTCCEEECCSSC-CSCCCTTT--TTTCTTCCEEECCSS
T ss_pred ------HHhcCC-ccCCEEECCCCc-CCccCHHH--HhCCcCCCEEEccCC
Confidence 001113 667777776653 33332221 135667777777665
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=5.2e-12 Score=115.38 Aligned_cols=182 Identities=19% Similarity=0.263 Sum_probs=127.6
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS 85 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 85 (439)
...+++|+.|++.+|. +..++. +. .+++|++|+++++ ++..+ +.+..+++|++|++++| .++.++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~-l~--------~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~n-~l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG-IQ--------YLPNVRYLALGGN-KLHDI---SALKELTNLTYLILTGN-QLQSLP 101 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT-GG--------GCTTCCEEECTTS-CCCCC---GGGTTCTTCCEEECTTS-CCCCCC
T ss_pred cccccceeeeeeCCCC-cccccc-cc--------cCCCCcEEECCCC-CCCCc---hhhcCCCCCCEEECCCC-ccCccC
Confidence 4567889999999986 444432 22 5899999999993 33333 45778999999999997 566655
Q ss_pred cC-CcCccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857 86 QG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC 163 (439)
Q Consensus 86 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~ 163 (439)
.. ++.+++|++|++++|.+. .++. .+..+++|++|+++++. +..++... ...+++|+.|+++++
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQ----------SLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGV---FDKLTNLTELDLSYN 167 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS
T ss_pred hhHhcCCcCCCEEECCCCcCC----------ccCHHHhccCCCCCEEECCCCc-cCccCHHH---hccCccCCEEECCCC
Confidence 44 688999999999995543 2222 24568899999999774 55544332 136889999999997
Q ss_pred cccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccc
Q 046857 164 TNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKR 228 (439)
Q Consensus 164 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 228 (439)
.+++ ++...+..+++|++|++++|. +..++. ..+..+ ++|+.|++.+++....
T Consensus 168 -~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------~~~~~l-~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 168 -QLQS-LPEGVFDKLTQLKDLRLYQNQ-LKSVPD--------GVFDRL-TSLQYIWLHDNPWDCT 220 (272)
T ss_dssp -CCCC-CCTTTTTTCTTCCEEECCSSC-CSCCCT--------TTTTTC-TTCCEEECCSSCBCCC
T ss_pred -CcCc-cCHHHhcCCccCCEEECCCCc-CCccCH--------HHHhCC-cCCCEEEccCCCcccc
Confidence 5665 455557889999999999874 443322 111224 8999999998754433
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.31 E-value=4.5e-11 Score=108.99 Aligned_cols=178 Identities=18% Similarity=0.162 Sum_probs=88.1
Q ss_pred CCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccC
Q 046857 153 NYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNF 232 (439)
Q Consensus 153 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 232 (439)
+++++|+++++ .++.. +...+..+++|++|+++++ .+..++. ..+..+ ++|++|+++++. ++.++..
T Consensus 37 ~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~i~~--------~~~~~l-~~L~~L~l~~n~-l~~~~~~ 103 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSL-PSKAFHRLTKLRLLYLNDN-KLQTLPA--------GIFKEL-KNLETLWVTDNK-LQALPIG 103 (270)
T ss_dssp TTCSEEECCSS-CCSCC-CTTSSSSCTTCCEEECCSS-CCSCCCT--------TTTSSC-TTCCEEECCSSC-CCCCCTT
T ss_pred CCCCEEECcCC-CCCee-CHHHhcCCCCCCEEECCCC-ccCeeCh--------hhhcCC-CCCCEEECCCCc-CCcCCHh
Confidence 45666666554 34432 3223555666666666654 2222211 001112 566666666542 3333221
Q ss_pred CCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCcee
Q 046857 233 TGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQH 312 (439)
Q Consensus 233 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 312 (439)
. ...+++|+.|++.++ .+..+++. ....+++|++|+++++ .++.
T Consensus 104 ~--~~~l~~L~~L~l~~n-~l~~~~~~--------------------------------~~~~l~~L~~L~Ls~n-~l~~ 147 (270)
T 2o6q_A 104 V--FDQLVNLAELRLDRN-QLKSLPPR--------------------------------VFDSLTKLTYLSLGYN-ELQS 147 (270)
T ss_dssp T--TTTCSSCCEEECCSS-CCCCCCTT--------------------------------TTTTCTTCCEEECCSS-CCCC
T ss_pred H--cccccCCCEEECCCC-ccCeeCHH--------------------------------HhCcCcCCCEEECCCC-cCCc
Confidence 1 124566666666653 23332211 1224456666666654 3444
Q ss_pred ccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857 313 LWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 313 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c 385 (439)
++...+. .+++|++|+++++ .++.++.. +..+++|++|+++++ +++.+ |...+..+++|+.|+++++
T Consensus 148 ~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 148 LPKGVFD---KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRV-PEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCTTTTT---TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCHhHcc---CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcC-CHHHhccccCCCEEEecCC
Confidence 4333222 5566667766665 34444432 445667777777664 46655 4334455667777777655
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=1.4e-11 Score=106.71 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=54.6
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE 120 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 120 (439)
+++|++|+++++ .+..+ +.+..+++|++|++++|..-...+..++.+++|++|++++|.+. ...+..
T Consensus 65 l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~---------~~~~~~ 131 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD---------DSILTK 131 (197)
T ss_dssp CTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB---------GGGHHH
T ss_pred CCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC---------cHhHHH
Confidence 455555555553 22222 23444555555555554222223444555555555555552211 112233
Q ss_pred hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecc
Q 046857 121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRN 188 (439)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 188 (439)
+..+++|++|+++++..+.+++. ...+++|+.|++++| .+++ ++ .+..+++|++|++++
T Consensus 132 l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n-~i~~-~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFD-GVHD-YR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTB-CCCC-CT--TGGGCSSCCEEEECB
T ss_pred HhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCC-CCcC-hH--HhccCCCCCEEEeeC
Confidence 33455555555554433333321 123445555555444 2332 12 134445555555544
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=5.2e-12 Score=117.73 Aligned_cols=230 Identities=15% Similarity=0.047 Sum_probs=131.8
Q ss_pred ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCc--cCCCCccEEeeccCCCccccc--
Q 046857 10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYT--LEFPSLERVSMTRCPNMKTFS-- 85 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~c~~l~~l~-- 85 (439)
..++.|.+.++............ ...+++|++|+++++. +..... ..+ ..+++|++|++++|..-...+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-----VLAYSRLKELTLEDLK-ITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-----HHHHSCCCEEEEESCC-CBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-----hcccCceeEEEeeCCE-eccchh-hhhhhccCCCCCEEEeecccccchhhhh
Confidence 34677777777532221111100 0124678888888842 222211 112 668888888888864332222
Q ss_pred --cCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee--ecCCCCCCcCccCCccEEEec
Q 046857 86 --QGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE--IWHGQALPVRFFNYLAELEVD 161 (439)
Q Consensus 86 --~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--i~~~~~l~~~~~~~L~~L~l~ 161 (439)
..+..+++|++|++++|.+... .+..+..+++|++|+++++..... ++... ....+++|++|+++
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAF---------SCEQVRAFPALTSLDLSDNPGLGERGLMAAL--CPHKFPAIQNLALR 205 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCC---------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTS--CTTSSCCCCSCBCC
T ss_pred HHHHhhhccCCCEEEeeCCCcchh---------hHHHhccCCCCCEEECCCCCCccchhhhHHH--hhhcCCCCCEEECC
Confidence 2334688888888888443211 123445678889999887763321 11111 01357889999998
Q ss_pred cccccccccch---hHHhhccccceeeeccccccchh-cc-ccccccccCcccccccccceEecCCcccccccccCCCcc
Q 046857 162 YCTNMSSAIPA---NLLRCLNNLARLEVRNCDSLEEM-LH-LEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNI 236 (439)
Q Consensus 162 ~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 236 (439)
+| .++. ++. ..++.+++|++|+++++. +... +. +.... .. ++|++|+++++ .++.++...
T Consensus 206 ~N-~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~-------~~-~~L~~L~Ls~N-~l~~lp~~~--- 270 (310)
T 4glp_A 206 NT-GMET-PTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCM-------WS-SALNSLNLSFA-GLEQVPKGL--- 270 (310)
T ss_dssp SS-CCCC-HHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCC-------CC-TTCCCEECCSS-CCCSCCSCC---
T ss_pred CC-CCCc-hHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhcc-------Cc-CcCCEEECCCC-CCCchhhhh---
Confidence 87 4542 222 235677899999999764 3332 21 11111 12 68999999887 455554433
Q ss_pred cCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcce
Q 046857 237 IEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEE 278 (439)
Q Consensus 237 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~ 278 (439)
+++|+.|+++++ .+..++. ...+++|+.| +.+.+.+
T Consensus 271 --~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 271 --PAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --CSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred --cCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCCCCC
Confidence 278999999885 4555432 2567888877 5555543
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=2.2e-12 Score=124.21 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=45.6
Q ss_pred cccCccceEeecCCCCce-----eccccCCccccccCCcceEEeecCCCccc----ccCCC--ccCCCcceEEEccCCCc
Q 046857 294 VAFPQLRKLRLSGLHKVQ-----HLWKENDESNKVFANLERLEISECSKLQK----LVPPS--WHLENLWGLQVSKCHGL 362 (439)
Q Consensus 294 ~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~~L~~L~l~~c~~l~~----l~~~~--~~l~~L~~L~l~~c~~l 362 (439)
..+++|+.|+++++. ++ .++. .+ ..+++|++|++++|..-.. ++..+ +.+++|++|++++|. +
T Consensus 213 ~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l---~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i 286 (386)
T 2ca6_A 213 AYCQELKVLDLQDNT-FTHLGSSALAI-AL---KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-I 286 (386)
T ss_dssp GGCTTCCEEECCSSC-CHHHHHHHHHH-HG---GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-C
T ss_pred hcCCCccEEECcCCC-CCcHHHHHHHH-HH---ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-C
Confidence 355667777776653 32 1111 11 1556777777766642221 23333 236677777777643 5
Q ss_pred cc----ccChhHHhhccccceEEEccc
Q 046857 363 IN----VLTLSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 363 ~~----l~p~~~~~~l~~L~~L~l~~c 385 (439)
+. .+|..+...+++|+.|++++|
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 54 124444345677777777666
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.27 E-value=6.2e-11 Score=108.41 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=120.1
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE 120 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 120 (439)
++|++|+++++ ++..++. ..+..+++|++|++++| .++.++. .+..+++|++|+++++.+.... +..
T Consensus 28 ~~l~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA---------LGA 95 (276)
T ss_dssp TTCCEEECTTC-CCCEECT-TTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC---------TTT
T ss_pred CCccEEECCCC-cccccCH-hHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccC---------hhh
Confidence 57999999983 4444432 13677999999999997 5666554 6788999999999995433211 134
Q ss_pred hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc-cchhHHhhccccceeeeccccccchhcccc
Q 046857 121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA-IPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
+.++++|++|+++++. +..++... ...+++|++|+++++. ++.. +|.. +..+++|++|+++++. +..++. .
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~-l~~~~~-~ 167 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFP---IGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNK-IQSIYC-T 167 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCC---CTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSC-CCEECG-G
T ss_pred hcCCccccEEECCCCC-ccccCchh---cccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCC-CCcCCH-H
Confidence 5568999999999765 44433321 2468999999999864 4442 3544 7889999999999873 433321 0
Q ss_pred ccccccCcccccccccc----eEecCCcccccccccCCCcccCCCCccEEeEecCCCcceec
Q 046857 200 ELNADKEHIGPLFPRLF----SLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFI 257 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 257 (439)
.+ ..+ ++|+ .|+++++ .+..++.... ...+|+.|++.++ .+..++
T Consensus 168 ~~-------~~l-~~L~~l~l~L~ls~n-~l~~~~~~~~---~~~~L~~L~L~~n-~l~~~~ 216 (276)
T 2z62_A 168 DL-------RVL-HQMPLLNLSLDLSLN-PMNFIQPGAF---KEIRLKELALDTN-QLKSVP 216 (276)
T ss_dssp GG-------HHH-HTCTTCCEEEECCSS-CCCEECTTSS---CSCCEEEEECCSS-CCSCCC
T ss_pred Hh-------hhh-hhccccceeeecCCC-cccccCcccc---CCCcccEEECCCC-ceeecC
Confidence 01 112 4454 7888876 3555544332 4458999999885 355443
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=1.6e-12 Score=125.05 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=54.1
Q ss_pred cccCccceEeecCCCCceeccccCC-ccc--cccCCcceEEeecCCCcc----cccCCC-ccCCCcceEEEccCCCcccc
Q 046857 294 VAFPQLRKLRLSGLHKVQHLWKEND-ESN--KVFANLERLEISECSKLQ----KLVPPS-WHLENLWGLQVSKCHGLINV 365 (439)
Q Consensus 294 ~~~~~L~~L~l~~~~~l~~l~~~~~-~~~--~~~~~L~~L~l~~c~~l~----~l~~~~-~~l~~L~~L~l~~c~~l~~l 365 (439)
..+++|+.|+++++. ++......+ ... ..+++|++|++++|..-. .++..+ .++++|++|++++|+ ++..
T Consensus 241 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~ 318 (386)
T 2ca6_A 241 KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEE 318 (386)
T ss_dssp GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTT
T ss_pred ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcc
Confidence 355677777777653 332211100 000 137889999998875433 366666 468999999999865 6554
Q ss_pred cC--hhHHhhccccceEEEccc
Q 046857 366 LT--LSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 366 ~p--~~~~~~l~~L~~L~l~~c 385 (439)
.+ ..+...+++++.+++..-
T Consensus 319 ~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 319 DDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp SHHHHHHHHHHHHHTCCEECCC
T ss_pred hhHHHHHHHHhhhcCcchhhhc
Confidence 32 345556677776666543
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=2.8e-11 Score=111.69 Aligned_cols=167 Identities=13% Similarity=0.200 Sum_probs=113.8
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.+++|+.|+++++ .+.++ +.+..+++|++|++++| .+..++. +..+++|++|++++|.+. .++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~---~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~----------~~~- 106 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVK----------DLS- 106 (291)
T ss_dssp HHHTCCEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC----------CGG-
T ss_pred hcCcccEEEccCC-CcccC---hhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCC----------CCh-
Confidence 4678888888883 33333 34667888888888886 5566655 778888888888885432 222
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
.+..+++|++|+++++. +..++. ...+++|+.|+++++ .+++. ..+..+++|++|++++| .+..+..+.
T Consensus 107 ~l~~l~~L~~L~L~~n~-i~~~~~-----l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~l~ 175 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNG-ISDING-----LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVPLA 175 (291)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-----GGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGGGT
T ss_pred hhccCCCCCEEECCCCc-CCCChh-----hcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchhhc
Confidence 25568888888888664 544321 136788999999886 45543 23778889999999876 444443321
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
.+ ++|+.|+++++ .++.++. ...+++|+.|++.++
T Consensus 176 ----------~l-~~L~~L~L~~N-~i~~l~~----l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 ----------GL-TKLQNLYLSKN-HISDLRA----LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ----------TC-TTCCEEECCSS-CCCBCGG----GTTCTTCSEEEEEEE
T ss_pred ----------CC-CccCEEECCCC-cCCCChh----hccCCCCCEEECcCC
Confidence 13 88999999887 4555532 247899999999885
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=9.3e-11 Score=108.12 Aligned_cols=162 Identities=17% Similarity=0.257 Sum_probs=74.0
Q ss_pred CCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCC
Q 046857 66 EFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQ 145 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 145 (439)
.+++|++|++++| .++.++ ++..+++|++|++++|.+. .++. +..+++|+.|+++++. +..++.
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~----------~~~~-l~~l~~L~~L~l~~n~-l~~~~~-- 107 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLT----------DIKP-LANLKNLGWLFLDENK-VKDLSS-- 107 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCC----------CCGG-GTTCTTCCEEECCSSC-CCCGGG--
T ss_pred hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccC----------CCcc-cccCCCCCEEECCCCc-CCCChh--
Confidence 4555666666654 344443 2455566666666553322 1111 3345556666665443 333221
Q ss_pred CCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCccc
Q 046857 146 ALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPK 225 (439)
Q Consensus 146 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 225 (439)
...+++|++|+++++ .+++ ++ .+..+++|++|++++| .+..+..+ ..+ ++|+.|+++++ .
T Consensus 108 ---l~~l~~L~~L~L~~n-~i~~-~~--~l~~l~~L~~L~l~~n-~l~~~~~l----------~~l-~~L~~L~L~~N-~ 167 (291)
T 1h6t_A 108 ---LKDLKKLKSLSLEHN-GISD-IN--GLVHLPQLESLYLGNN-KITDITVL----------SRL-TKLDTLSLEDN-Q 167 (291)
T ss_dssp ---GTTCTTCCEEECTTS-CCCC-CG--GGGGCTTCCEEECCSS-CCCCCGGG----------GGC-TTCSEEECCSS-C
T ss_pred ---hccCCCCCEEECCCC-cCCC-Ch--hhcCCCCCCEEEccCC-cCCcchhh----------ccC-CCCCEEEccCC-c
Confidence 124555666666554 3333 12 1445556666666554 22222111 112 55666666555 2
Q ss_pred ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC
Q 046857 226 LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP 271 (439)
Q Consensus 226 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L 271 (439)
++.++. ...+++|+.|++.++ .+..++. ...+++|+.|
T Consensus 168 l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L 205 (291)
T 1h6t_A 168 ISDIVP----LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVL 205 (291)
T ss_dssp CCCCGG----GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEE
T ss_pred cccchh----hcCCCccCEEECCCC-cCCCChh---hccCCCCCEE
Confidence 333221 224556666666553 3333321 2344555554
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=8.8e-11 Score=101.68 Aligned_cols=150 Identities=14% Similarity=0.232 Sum_probs=95.6
Q ss_pred cCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee-ecC
Q 046857 65 LEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE-IWH 143 (439)
Q Consensus 65 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-i~~ 143 (439)
..+++|++|+++++ .+..+| ++..+++|++|++++|.+. .+ ..+..+++|++|+++++. +.. .+.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~----------~~-~~l~~l~~L~~L~l~~n~-l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHAT----------NY-NPISGLSNLERLRIMGKD-VTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCS----------CC-GGGTTCTTCCEEEEECTT-CBGGGSC
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCC----------cc-hhhhcCCCCCEEEeECCc-cCcccCh
Confidence 35677777777774 455666 5667777777777774221 11 133457778888887654 332 222
Q ss_pred CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCc
Q 046857 144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDL 223 (439)
Q Consensus 144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 223 (439)
.. ..+++|+.|+++++ .+++..+.. +..+++|++|++++|..+..++.+. .+ ++|+.|+++++
T Consensus 107 ~l----~~l~~L~~L~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~----------~l-~~L~~L~l~~n 169 (197)
T 4ezg_A 107 NL----SGLTSLTLLDISHS-AHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLK----------TL-PELKSLNIQFD 169 (197)
T ss_dssp CC----TTCTTCCEEECCSS-BCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGG----------GC-SSCCEEECTTB
T ss_pred hh----cCCCCCCEEEecCC-ccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhc----------CC-CCCCEEECCCC
Confidence 21 35788888888886 455434443 7788888899888876465554322 13 88888888887
Q ss_pred ccccccccCCCcccCCCCccEEeEecC
Q 046857 224 PKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
. +..++ ....+++|+.|++.+.
T Consensus 170 ~-i~~~~----~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 170 G-VHDYR----GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp C-CCCCT----TGGGCSSCCEEEECBC
T ss_pred C-CcChH----HhccCCCCCEEEeeCc
Confidence 3 44443 2236788888888874
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.5e-10 Score=107.77 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=55.0
Q ss_pred CCCccEEeeccCCCccccccCC--cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857 67 FPSLERVSMTRCPNMKTFSQGI--VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG 144 (439)
Q Consensus 67 l~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~ 144 (439)
+++|++|++++|..-...|..+ ..+++|++|++++|.+...... ... ..+..+++|++|+++++. +..++..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~--~~~~~~~~L~~L~Ls~n~-l~~~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW---LAE--LQQWLKPGLKVLSIAQAH-SPAFSCE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS---HHH--HHTTBCSCCCEEEEECCS-SCCCCTT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh---hHH--HHhhhccCCCEEEeeCCC-cchhhHH
Confidence 4567777777765444555555 6677777777777543321100 000 122245666666666544 3322221
Q ss_pred CCCCcCccCCccEEEecccccccc--ccchhHHhhccccceeeeccc
Q 046857 145 QALPVRFFNYLAELEVDYCTNMSS--AIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 145 ~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~~ 189 (439)
. ...+++|++|++++++-... ..+...+..+++|++|++++|
T Consensus 164 ~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 164 Q---VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp S---CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred H---hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 1 12455666666666532211 001111234555555555554
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=5.1e-11 Score=120.71 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=25.6
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCc
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGE 102 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~ 102 (439)
+++|+.|+|+++ ++..+ +.+..+++|+.|++++| .+..+| .+..+++|+.|++++|
T Consensus 64 l~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 64 LPNVTKLFLNGN-KLTDI---KPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTS
T ss_pred CCCCCEEEeeCC-CCCCC---hhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCC
Confidence 455555555552 12222 22444555555555554 333333 3445555555555553
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.15 E-value=3.4e-11 Score=122.06 Aligned_cols=168 Identities=13% Similarity=0.184 Sum_probs=122.9
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.+++|+.|+++++ .+.++ +.+..+++|+.|++++| .+..++. +..+++|+.|++++|.+.. ++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~----------l~- 103 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV---QGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKD----------LS- 103 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC---TTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCC----------CT-
T ss_pred cCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCC----------Ch-
Confidence 4789999999983 33444 45778999999999997 5666665 7889999999999965432 22
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccc
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLE 199 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 199 (439)
.+..+++|+.|+++++. +..++. ...+++|+.|++++| .+++. ..+..+++|+.|++++| .+..+.++.
T Consensus 104 ~l~~l~~L~~L~Ls~N~-l~~l~~-----l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~l~ 172 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG-ISDING-----LVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVPLA 172 (605)
T ss_dssp TSTTCTTCCEEECTTSC-CCCCGG-----GGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGGGT
T ss_pred hhccCCCCCEEEecCCC-CCCCcc-----ccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchhhc
Confidence 45568999999999765 544432 246899999999987 56653 23788999999999987 444443322
Q ss_pred ccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCC
Q 046857 200 ELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCP 251 (439)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 251 (439)
.+ ++|+.|+|+++ .+..++ ....+++|+.|++.+++
T Consensus 173 ----------~l-~~L~~L~Ls~N-~i~~l~----~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 ----------GL-TKLQNLYLSKN-HISDLR----ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ----------TC-TTCCEEECCSS-CCCBCG----GGTTCTTCSEEECCSEE
T ss_pred ----------cC-CCCCEEECcCC-CCCCCh----HHccCCCCCEEEccCCc
Confidence 13 89999999997 455543 23478999999999863
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.13 E-value=3.5e-10 Score=101.91 Aligned_cols=175 Identities=17% Similarity=0.165 Sum_probs=120.7
Q ss_pred ccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCC
Q 046857 10 NSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGI 88 (439)
Q Consensus 10 ~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~ 88 (439)
.+.++++++++. ++.+|..+ .++++.|++++ .++..+.. ..+..+++|++|+++++ .++.++ ..+
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~----------~~~l~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGI----------PADTEKLDLQS-TGLATLSD-ATFRGLTKLTWLNLDYN-QLQTLSAGVF 79 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCC----------CTTCCEEECTT-SCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred CCCeEEecCCCC-ccccCCCC----------CCCCCEEEccC-CCcCccCH-hHhcCcccCCEEECCCC-cCCccCHhHh
Confidence 456788888764 66666543 35899999998 33343322 23667899999999996 555554 447
Q ss_pred cCccCccceeecCceeeecCcCchhhhhhh-hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857 89 VSTPKLHEVQEEGELCRWEGNLNSTIQKCY-EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS 167 (439)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~ 167 (439)
..+++|++|+++++.+. .++ ..+..+++|++|+++++. +..++... ...+++|+.|+++++ .++
T Consensus 80 ~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N-~l~ 144 (251)
T 3m19_A 80 DDLTELGTLGLANNQLA----------SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGV---FDRLTKLKELRLNTN-QLQ 144 (251)
T ss_dssp TTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCC
T ss_pred ccCCcCCEEECCCCccc----------ccChhHhcccCCCCEEEcCCCc-CCCcChhH---hccCCcccEEECcCC-cCC
Confidence 88999999999985543 222 234568899999999764 65554432 135889999999886 566
Q ss_pred cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857 168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
. ++...+..+++|++|+++++ .+..++. ..+..+ ++|+.|++.+++
T Consensus 145 ~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~--------~~~~~l-~~L~~L~l~~N~ 190 (251)
T 3m19_A 145 S-IPAGAFDKLTNLQTLSLSTN-QLQSVPH--------GAFDRL-GKLQTITLFGNQ 190 (251)
T ss_dssp C-CCTTTTTTCTTCCEEECCSS-CCSCCCT--------TTTTTC-TTCCEEECCSCC
T ss_pred c-cCHHHcCcCcCCCEEECCCC-cCCccCH--------HHHhCC-CCCCEEEeeCCc
Confidence 5 45444788999999999986 4444332 111223 899999999875
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.12 E-value=4.8e-10 Score=100.98 Aligned_cols=173 Identities=19% Similarity=0.153 Sum_probs=97.3
Q ss_pred cccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceecc
Q 046857 179 NNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFIS 258 (439)
Q Consensus 179 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 258 (439)
...+++++++. .+..++. ...++++.|+++++. +..+.... ...+++|+.|++.++ .+..+++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~------------~~~~~l~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~ 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS------------GIPADTEKLDLQSTG-LATLSDAT--FRGLTKLTWLNLDYN-QLQTLSA 76 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS------------CCCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECTTS-CCCCCCT
T ss_pred CCCeEEecCCC-CccccCC------------CCCCCCCEEEccCCC-cCccCHhH--hcCcccCCEEECCCC-cCCccCH
Confidence 45677777754 4444432 022689999999874 44433221 237899999999985 5555543
Q ss_pred ccccccccCCCCC--CccCcceeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCC
Q 046857 259 NSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECS 336 (439)
Q Consensus 259 ~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 336 (439)
.. ...+++|+.| +.+.+..+++ .....+++|+.|+++++ .++.+....+. .+++|++|+++++
T Consensus 77 ~~-~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N- 141 (251)
T 3m19_A 77 GV-FDDLTELGTLGLANNQLASLPL---------GVFDHLTQLDKLYLGGN-QLKSLPSGVFD---RLTKLKELRLNTN- 141 (251)
T ss_dssp TT-TTTCTTCCEEECTTSCCCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-
T ss_pred hH-hccCCcCCEEECCCCcccccCh---------hHhcccCCCCEEEcCCC-cCCCcChhHhc---cCCcccEEECcCC-
Confidence 32 2455666666 4444544321 11234566666666664 34444333222 4566666666665
Q ss_pred CcccccC-CCccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857 337 KLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 337 ~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c 385 (439)
.++.++. .+..+++|++|+++++ +++.+ +...+..+++|+.|++.++
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTN-QLQSV-PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred cCCccCHHHcCcCcCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEEeeCC
Confidence 4444544 3456666666666663 45555 3333455666666666665
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=5.8e-10 Score=111.84 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=121.4
Q ss_pred cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcC
Q 046857 11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVS 90 (439)
Q Consensus 11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 90 (439)
+|+.|++++|. +..+|.. .+++|++|+++++ ++..++ ..+++|++|++++| .++.+|. +..
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~----------l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN----------LPPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC----------CCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-CCT
T ss_pred CccEEEeCCCC-CCccCHh----------HcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcch-hhc
Confidence 88999999886 4556553 2468999999982 344443 45789999999996 5677877 554
Q ss_pred ccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccccc
Q 046857 91 TPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAI 170 (439)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 170 (439)
+|++|++++|.+. .+|. .+++|+.|+++++. +..++ . .+++|+.|+++++ .++. +
T Consensus 121 --~L~~L~Ls~N~l~----------~lp~---~l~~L~~L~Ls~N~-l~~lp------~-~l~~L~~L~Ls~N-~L~~-l 175 (571)
T 3cvr_A 121 --SLKHLDVDNNQLT----------MLPE---LPALLEYINADNNQ-LTMLP------E-LPTSLEVLSVRNN-QLTF-L 175 (571)
T ss_dssp --TCCEEECCSSCCS----------CCCC---CCTTCCEEECCSSC-CSCCC------C-CCTTCCEEECCSS-CCSC-C
T ss_pred --CCCEEECCCCcCC----------CCCC---cCccccEEeCCCCc-cCcCC------C-cCCCcCEEECCCC-CCCC-c
Confidence 8999999884433 2333 47889999998665 44433 2 4678999999886 4665 4
Q ss_pred chhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857 171 PANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
|. +. ++|++|+++++ .+..++.+.. ......+.|+.|+++++ .++.++.... .+++|+.|++.++
T Consensus 176 p~--l~--~~L~~L~Ls~N-~L~~lp~~~~------~L~~~~~~L~~L~Ls~N-~l~~lp~~l~---~l~~L~~L~L~~N 240 (571)
T 3cvr_A 176 PE--LP--ESLEALDVSTN-LLESLPAVPV------RNHHSEETEIFFRCREN-RITHIPENIL---SLDPTCTIILEDN 240 (571)
T ss_dssp CC--CC--TTCCEEECCSS-CCSSCCCCC--------------CCEEEECCSS-CCCCCCGGGG---GSCTTEEEECCSS
T ss_pred ch--hh--CCCCEEECcCC-CCCchhhHHH------hhhcccccceEEecCCC-cceecCHHHh---cCCCCCEEEeeCC
Confidence 54 33 88999999876 5555443110 00000133488999886 5666666553 5888999999886
Q ss_pred C
Q 046857 251 P 251 (439)
Q Consensus 251 ~ 251 (439)
+
T Consensus 241 ~ 241 (571)
T 3cvr_A 241 P 241 (571)
T ss_dssp S
T ss_pred c
Confidence 4
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.06 E-value=3.1e-10 Score=102.93 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=98.3
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE 120 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 120 (439)
+.++..+++++ .++.++ +.+..+++|++|++++| .++.++ .++.+++|++|++++|.+. .++.
T Consensus 18 l~~l~~l~l~~-~~i~~~---~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~----------~~~~- 80 (263)
T 1xeu_A 18 LANAVKQNLGK-QSVTDL---VSQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQIS----------DLSP- 80 (263)
T ss_dssp HHHHHHHHHTC-SCTTSE---ECHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCC----------CCGG-
T ss_pred HHHHHHHHhcC-CCcccc---cchhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccC----------CChh-
Confidence 45566666665 223333 23455677777777775 455565 5666777777777774322 2222
Q ss_pred hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccc
Q 046857 121 MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEE 200 (439)
Q Consensus 121 ~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 200 (439)
+..+++|+.|+++++. +..++... . ++|+.|+++++ .+++ ++ . +..+++|++|+++++ .+..++.+.
T Consensus 81 l~~l~~L~~L~L~~N~-l~~l~~~~-----~-~~L~~L~L~~N-~l~~-~~-~-l~~l~~L~~L~Ls~N-~i~~~~~l~- 147 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR-LKNLNGIP-----S-ACLSRLFLDNN-ELRD-TD-S-LIHLKNLEILSIRNN-KLKSIVMLG- 147 (263)
T ss_dssp GTTCSSCCEEECCSSC-CSCCTTCC-----C-SSCCEEECCSS-CCSB-SG-G-GTTCTTCCEEECTTS-CCCBCGGGG-
T ss_pred hccCCCCCEEECCCCc-cCCcCccc-----c-CcccEEEccCC-ccCC-Ch-h-hcCcccccEEECCCC-cCCCChHHc-
Confidence 4457777777777554 44433221 2 77888888776 4554 23 2 667788888888875 344433211
Q ss_pred cccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecC
Q 046857 201 LNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENC 250 (439)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 250 (439)
.+ ++|+.|+++++ .+..+ . ....+++|+.|++.++
T Consensus 148 ---------~l-~~L~~L~L~~N-~i~~~-~---~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 148 ---------FL-SKLEVLDLHGN-EITNT-G---GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ---------GC-TTCCEEECTTS-CCCBC-T---TSTTCCCCCEEEEEEE
T ss_pred ---------cC-CCCCEEECCCC-cCcch-H---HhccCCCCCEEeCCCC
Confidence 13 78888888876 34433 1 2236788888888874
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=3.8e-10 Score=102.40 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=114.9
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
.+.+++.++++++. ++.++. +. .+++|++|+++++ ++.++ +.+..+++|++|++++| .+..++.
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~~-~~--------~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~L~~N-~i~~~~~- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLVS-QK--------ELSGVQNFNGDNS-NIQSL---AGMQFFTNLKELHLSHN-QISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEEC-HH--------HHTTCSEEECTTS-CCCCC---TTGGGCTTCCEEECCSS-CCCCCGG-
T ss_pred HHHHHHHHHhcCCC-cccccc-hh--------hcCcCcEEECcCC-Ccccc---hHHhhCCCCCEEECCCC-ccCCChh-
Confidence 46667777777764 444442 22 4789999999984 44544 34678899999999986 5677766
Q ss_pred CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccc
Q 046857 88 IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMS 167 (439)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~ 167 (439)
+..+++|++|++++|.+... +.. .. ++|+.|+++++. +..++. ...+++|+.|+++++ .++
T Consensus 81 l~~l~~L~~L~L~~N~l~~l----------~~~-~~-~~L~~L~L~~N~-l~~~~~-----l~~l~~L~~L~Ls~N-~i~ 141 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNL----------NGI-PS-ACLSRLFLDNNE-LRDTDS-----LIHLKNLEILSIRNN-KLK 141 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCC----------TTC-CC-SSCCEEECCSSC-CSBSGG-----GTTCTTCCEEECTTS-CCC
T ss_pred hccCCCCCEEECCCCccCCc----------Ccc-cc-CcccEEEccCCc-cCCChh-----hcCcccccEEECCCC-cCC
Confidence 78899999999998554322 211 12 789999999764 554432 136889999999886 466
Q ss_pred cccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCCcc
Q 046857 168 SAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 168 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
+. + .+..+++|++|+++++ .+..+.. +..+ ++|+.|+++++.
T Consensus 142 ~~-~--~l~~l~~L~~L~L~~N-~i~~~~~----------l~~l-~~L~~L~l~~N~ 183 (263)
T 1xeu_A 142 SI-V--MLGFLSKLEVLDLHGN-EITNTGG----------LTRL-KKVNWIDLTGQK 183 (263)
T ss_dssp BC-G--GGGGCTTCCEEECTTS-CCCBCTT----------STTC-CCCCEEEEEEEE
T ss_pred CC-h--HHccCCCCCEEECCCC-cCcchHH----------hccC-CCCCEEeCCCCc
Confidence 53 4 2778899999999986 3433321 1223 889999998874
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.03 E-value=1.1e-10 Score=111.22 Aligned_cols=86 Identities=13% Similarity=-0.052 Sum_probs=45.7
Q ss_pred CccceEeecCCCCceeccccCCc-cccc-cCCcceEEeecCCCccc-----ccCCCccCCCcceEEEccCCCcccccCh-
Q 046857 297 PQLRKLRLSGLHKVQHLWKENDE-SNKV-FANLERLEISECSKLQK-----LVPPSWHLENLWGLQVSKCHGLINVLTL- 368 (439)
Q Consensus 297 ~~L~~L~l~~~~~l~~l~~~~~~-~~~~-~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l~p~- 368 (439)
++|+.|+++++. ++......+. .... .++|++|++++|. ++. +......+++|++|++++|. +..+.+.
T Consensus 196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~ 272 (362)
T 3goz_A 196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQ 272 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHH
T ss_pred CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHH
Confidence 488888888763 4432111000 0002 3478888888774 322 22334567788888888763 2222111
Q ss_pred --h---HHhhccccceEEEccc
Q 046857 369 --S---ASKNLVNLGRMKIVDC 385 (439)
Q Consensus 369 --~---~~~~l~~L~~L~l~~c 385 (439)
. .+..+++|+.|+++++
T Consensus 273 ~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 273 CKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHHhccCCceEEEecCCC
Confidence 0 1234566777777766
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.01 E-value=1.2e-09 Score=95.28 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=80.5
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.++|++|++++. ++..++. ..+..+++|++|+++++ .++.++.. +..+++|++|+++++.+. .++.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ----------SLPN 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC----------CCCT
T ss_pred CCCCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC----------ccCH
Confidence 457888888883 3333321 12456788888888885 55666544 467788888888774433 2222
Q ss_pred h-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857 120 E-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD 190 (439)
Q Consensus 120 ~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 190 (439)
. +..+++|++|+++++. +..++... ...+++|+.|+++++ .++. ++...+..+++|++|+++++.
T Consensus 94 ~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQ-LQSLPDGV---FDKLTQLKDLRLYQN-QLKS-VPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCccCCCEEEcCCCc-CcccCHhH---hccCCcCCEEECCCC-ccce-eCHHHhccCCCccEEEecCCC
Confidence 2 3457778888887553 44433322 135677888888775 4554 344446667777888777763
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=3.2e-09 Score=93.53 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=103.9
Q ss_pred CCCCccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc
Q 046857 4 GSVGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT 83 (439)
Q Consensus 4 ~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 83 (439)
|+-+.|. -+.++++++. ++.+|..+ .+.+++|++++ .++..++....+..+++|++|+++++ .++.
T Consensus 6 P~~C~C~-~~~l~~s~n~-l~~iP~~~----------~~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~ 71 (220)
T 2v70_A 6 PEKCRCE-GTTVDCSNQK-LNKIPEHI----------PQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNN-KITD 71 (220)
T ss_dssp CTTCEEE-TTEEECCSSC-CSSCCSCC----------CTTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCE
T ss_pred CCCCEEC-CCEeEeCCCC-cccCccCC----------CCCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCC-cCCE
Confidence 4444444 3578888764 55566542 34678999998 34444432233567899999999986 5666
Q ss_pred ccc-CCcCccCccceeecCceeeecCcCchhhhhhh-hhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEec
Q 046857 84 FSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY-EEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVD 161 (439)
Q Consensus 84 l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~ 161 (439)
++. .+..+++|++|++++|.+. .++ ..+..+++|++|+++++. +..+.... + ..+++|+.|+++
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~--~~l~~L~~L~L~ 137 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLE----------NVQHKMFKGLESLKTLMLRSNR-ITCVGNDS-F--IGLSSVRLLSLY 137 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC----------CCCGGGGTTCSSCCEEECTTSC-CCCBCTTS-S--TTCTTCSEEECT
T ss_pred ECHHHhCCCCCCCEEECCCCccC----------ccCHhHhcCCcCCCEEECCCCc-CCeECHhH-c--CCCccCCEEECC
Confidence 654 6788899999999885433 222 234568889999998665 54443222 1 357888888888
Q ss_pred cccccccccchhHHhhccccceeeeccccc
Q 046857 162 YCTNMSSAIPANLLRCLNNLARLEVRNCDS 191 (439)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 191 (439)
++ .++...|.. +..+++|++|++++++.
T Consensus 138 ~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 138 DN-QITTVAPGA-FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TS-CCCCBCTTT-TTTCTTCCEEECCSCCE
T ss_pred CC-cCCEECHHH-hcCCCCCCEEEecCcCC
Confidence 85 566543443 77788888888887643
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.94 E-value=5e-09 Score=92.21 Aligned_cols=130 Identities=9% Similarity=0.121 Sum_probs=74.1
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhh
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE 120 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 120 (439)
++|+.|++++ .++..++. ..+..+++|++|+++++ .+..+ |..+..+++|++|++++|.+. .++..
T Consensus 32 ~~l~~L~l~~-n~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~----------~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKIT----------ELPKS 98 (220)
T ss_dssp TTCCEEECCS-SCCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCC----------CCCTT
T ss_pred cCCCEEECCC-CcCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCC----------ccCHh
Confidence 5777777777 23333322 12556777888888775 34443 566777777777777774332 23322
Q ss_pred -hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeecccc
Q 046857 121 -MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCD 190 (439)
Q Consensus 121 -~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 190 (439)
+.++++|+.|+++++. +..+.... ...+++|+.|+++++ .++.. +...+..+++|++|++++++
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDA---FQDLHNLNLLSLYDN-KLQTI-AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHH---cCCCCCCCEEECCCC-cCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence 2356677777777544 44332221 124666777777664 34442 33335566667777766653
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.93 E-value=3.6e-10 Score=107.62 Aligned_cols=70 Identities=9% Similarity=-0.039 Sum_probs=43.5
Q ss_pred CccceEeecCCCCceeccccCC-ccccccCCcceEEeecCC-------CcccccCCCccCCCcceEEEccCCCcccccCh
Q 046857 297 PQLRKLRLSGLHKVQHLWKEND-ESNKVFANLERLEISECS-------KLQKLVPPSWHLENLWGLQVSKCHGLINVLTL 368 (439)
Q Consensus 297 ~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~ 368 (439)
++|+.|+++++ .++......+ .....+++|++|++++|. .+..++..+..+++|+.|++++++ +....+.
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~~~~ 302 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSHSI 302 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGGGCH
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCcchH
Confidence 47888888775 3444322110 111267789999998875 133455667788899999998854 5544333
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.92 E-value=1.2e-09 Score=91.73 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=82.1
Q ss_pred ccccceeecccccccc--ccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857 41 FSNLKVLILDYLPRLT--SFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY 118 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 118 (439)
.++|++|+++++. +. .++ ..+..+++|++|++++|. ++.+ ..++.+++|++|++++|.+... +|
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~--~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~---------~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIE--GLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGG---------LD 88 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCS--SCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSC---------CC
T ss_pred cccCCEEECCCCC-CChhhHH--HHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchH---------HH
Confidence 4667777777732 22 222 224567777777777764 5555 5567777777777777443321 23
Q ss_pred hhhcCCCCccEEEccCCCCceeecC-CCCCCcCccCCccEEEeccccccccccch---hHHhhccccceeeecccc
Q 046857 119 EEMIGFRDIQYLQLSHFPRLKEIWH-GQALPVRFFNYLAELEVDYCTNMSSAIPA---NLLRCLNNLARLEVRNCD 190 (439)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~i~~-~~~l~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~~~ 190 (439)
..+..+++|+.|+++++. +..++. .. ...+++|+.|+++++ .++.. +. ..+..+++|++|++++|.
T Consensus 89 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---l~~l~~L~~L~l~~N-~l~~~-~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNK-LKDISTLEP---LKKLECLKSLDLFNC-EVTNL-NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHCTTCCEEECBSSS-CCSSGGGGG---GSSCSCCCEEECCSS-GGGTS-TTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHhhCCCCCEEeccCCc-cCcchhHHH---HhcCCCCCEEEeeCC-cCcch-HHHHHHHHHhCccCcEecCCCCC
Confidence 333357788888888664 554431 11 135788999999887 45553 43 357889999999999874
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.90 E-value=1.3e-09 Score=89.66 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=79.6
Q ss_pred ccccceeecccccccc--ccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhh
Q 046857 41 FSNLKVLILDYLPRLT--SFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCY 118 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 118 (439)
.++|+.|+++++. +. .++ ..+..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. .+|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~---------~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLE--GLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSG---------GLE 81 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCC--SCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCS---------CTH
T ss_pred CccCeEEEccCCc-CChhHHH--HHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccc---------hHH
Confidence 4567777777632 22 222 22456777777777775 45555 556677777777777743221 134
Q ss_pred hhhcCCCCccEEEccCCCCceeec--CCCCCCcCccCCccEEEeccccccccccc--hhHHhhccccceeeecc
Q 046857 119 EEMIGFRDIQYLQLSHFPRLKEIW--HGQALPVRFFNYLAELEVDYCTNMSSAIP--ANLLRCLNNLARLEVRN 188 (439)
Q Consensus 119 ~~~~~~~~L~~L~l~~~~~l~~i~--~~~~l~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~L~~L~l~~ 188 (439)
..+..+++|+.|+++++. +..++ ... ..+++|++|+++++ .+++..+ ...+..+++|++|++++
T Consensus 82 ~~~~~l~~L~~L~ls~N~-i~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNK-IKDLSTIEPL----KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHCTTCCEEECTTSC-CCSHHHHGGG----GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhhCCCCCEEECCCCc-CCChHHHHHH----hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 444457788888888665 44432 211 36788999999887 4655333 14588899999998763
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.88 E-value=7.4e-09 Score=98.46 Aligned_cols=152 Identities=16% Similarity=0.073 Sum_probs=75.4
Q ss_pred cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCC--CccCcceeeeecccccccc
Q 046857 213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEP--QKLTLEEYFLLAHQVQPLF 290 (439)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L--~~~~l~~~~~~~~~~~~~~ 290 (439)
+.++.|+++++ .++.++.... ...+++|+.|++.++ .+..+++..+ ..+++|+.| +.+.+..+.+
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~-~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~--------- 105 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWT-PTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSNHLHTLDE--------- 105 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSS-SSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCCEECT---------
T ss_pred CCCCEEECCCC-CCCccChhhh-hhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCCcCCcCCH---------
Confidence 67888999886 4555544331 126788999999884 5666654322 345555555 4444444321
Q ss_pred ccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC----ccCCCcceEEEccCCCccccc
Q 046857 291 DEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS----WHLENLWGLQVSKCHGLINVL 366 (439)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~l~ 366 (439)
.....+++|+.|+++++ .+..+....+. .+++|++|+++++ .++.+|... ..+++|+.|++++ ++++.+
T Consensus 106 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l- 178 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNN-HIVVVDRNAFE---DMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKL- 178 (361)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS-SCCCCC-
T ss_pred HHhCCCcCCCEEECCCC-cccEECHHHhC---CcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCcc-
Confidence 11223455555555553 23333322222 4555555555554 333444332 2455555555554 235544
Q ss_pred ChhHHhhccc--cceEEEcc
Q 046857 367 TLSASKNLVN--LGRMKIVD 384 (439)
Q Consensus 367 p~~~~~~l~~--L~~L~l~~ 384 (439)
|...+..+++ ++.|++.+
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCS
T ss_pred CHHHhhhccHhhcceEEecC
Confidence 3333344443 24455544
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.88 E-value=4.9e-09 Score=86.13 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=53.4
Q ss_pred CCCccEEeeccCCCcc--ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee-ecC
Q 046857 67 FPSLERVSMTRCPNMK--TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE-IWH 143 (439)
Q Consensus 67 l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-i~~ 143 (439)
.++|++|++++|. +. .+|..+..+++|++|++++|.+... ..+..+++|+.|+++++. +.. ++.
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~Ls~n~-i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-----------ANLPKLNKLKKLELSDNR-VSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-----------TTCCCCTTCCEEECCSSC-CCSCTHH
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-----------hhhhcCCCCCEEECCCCc-ccchHHH
Confidence 3556666666653 33 5555556666666666666433221 223345666666666544 222 221
Q ss_pred CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
.. ..+++|++|+++++. +++......+..+++|++|++++|
T Consensus 83 ~~----~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 83 LA----EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp HH----HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred Hh----hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 11 135666666666653 443211122555666666666655
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.87 E-value=8.6e-09 Score=91.31 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=99.2
Q ss_pred CceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-CcC
Q 046857 12 LVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IVS 90 (439)
Q Consensus 12 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~ 90 (439)
-+.++.+++ .+..+|.. ..++|++|++++ .++..+.. ..+..+++|++|+++++ .++.+|.. +..
T Consensus 21 ~~~v~c~~~-~l~~ip~~----------~~~~L~~L~Ls~-n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~ 86 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG----------IPTNAQILYLHD-NQITKLEP-GVFDSLINLKELYLGSN-QLGALPVGVFDS 86 (229)
T ss_dssp TTEEECTTS-CCSSCCSC----------CCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCEeEccCC-CcCccCCC----------CCCCCCEEEcCC-CccCccCH-HHhhCccCCcEEECCCC-CCCCcChhhccc
Confidence 345555543 35555543 246888999988 23333321 22567888999999886 46766644 577
Q ss_pred ccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857 91 TPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA 169 (439)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 169 (439)
+++|++|++++|.+. .++.. +..+++|+.|+++++. +..++... ..+++|+.|+++++ .++.
T Consensus 87 l~~L~~L~Ls~N~l~----------~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~----~~l~~L~~L~L~~N-~l~~- 149 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLT----------VLPSAVFDRLVHLKELFMCCNK-LTELPRGI----ERLTHLTHLALDQN-QLKS- 149 (229)
T ss_dssp CTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSC-CCSCCTTG----GGCTTCSEEECCSS-CCCC-
T ss_pred CCCcCEEECCCCcCC----------ccChhHhCcchhhCeEeccCCc-ccccCccc----ccCCCCCEEECCCC-cCCc-
Confidence 889999999885433 23222 3468889999998654 65655443 46788999999886 5665
Q ss_pred cchhHHhhccccceeeeccccc
Q 046857 170 IPANLLRCLNNLARLEVRNCDS 191 (439)
Q Consensus 170 ~~~~~~~~l~~L~~L~l~~~~~ 191 (439)
++...+..+++|++|++.+++.
T Consensus 150 ~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 150 IPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCTTTTTTCTTCCEEECTTSCB
T ss_pred cCHHHHhCCCCCCEEEeeCCCc
Confidence 4545577888999999987653
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=2.1e-08 Score=100.50 Aligned_cols=138 Identities=18% Similarity=0.190 Sum_probs=71.8
Q ss_pred ccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhc
Q 046857 43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI 122 (439)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 122 (439)
+|+.|+++++ ++..++.. -+++|++|++++| .++.+| ..+++|++|++++|.+. .+|. +.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~----l~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~----------~ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN----LPPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLS----------TLPE-LP 119 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC----CCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS----------CCCC-CC
T ss_pred CccEEEeCCC-CCCccCHh----HcCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCC----------Ccch-hh
Confidence 6667777662 33333221 1366777777764 455666 33667777777663322 2222 21
Q ss_pred CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccc
Q 046857 123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELN 202 (439)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 202 (439)
. +|+.|+++++. +..+ |. .+++|+.|+++++ .++. +|. .+++|++|++++| .+..++.
T Consensus 120 ~--~L~~L~Ls~N~-l~~l------p~-~l~~L~~L~Ls~N-~l~~-lp~----~l~~L~~L~Ls~N-~L~~lp~----- 177 (571)
T 3cvr_A 120 A--SLKHLDVDNNQ-LTML------PE-LPALLEYINADNN-QLTM-LPE----LPTSLEVLSVRNN-QLTFLPE----- 177 (571)
T ss_dssp T--TCCEEECCSSC-CSCC------CC-CCTTCCEEECCSS-CCSC-CCC----CCTTCCEEECCSS-CCSCCCC-----
T ss_pred c--CCCEEECCCCc-CCCC------CC-cCccccEEeCCCC-ccCc-CCC----cCCCcCEEECCCC-CCCCcch-----
Confidence 1 66777776543 3332 22 3566777777664 3443 343 3566666766665 2333222
Q ss_pred cccCcccccccccceEecCCccccccccc
Q 046857 203 ADKEHIGPLFPRLFSLTLIDLPKLKRFCN 231 (439)
Q Consensus 203 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 231 (439)
+.++|+.|+++++ .++.++.
T Consensus 178 --------l~~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 178 --------LPESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp --------CCTTCCEEECCSS-CCSSCCC
T ss_pred --------hhCCCCEEECcCC-CCCchhh
Confidence 0156666666665 3444443
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.85 E-value=1.1e-10 Score=117.55 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=23.5
Q ss_pred CCccccCceEEEccccccceeccccccccccccccccccceeecc
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILD 50 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 50 (439)
+..++.|+.|+|+++. ++.+|..++ .+++|+.|+++
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~--------~l~~L~~L~l~ 380 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELE--------SCKELQELEPE 380 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHH--------HHHHHHHHCTT
T ss_pred cccCccceeccCChhh-HHhhHHHHH--------HHHHHHHhccc
Confidence 4567888888888875 566776655 34455555543
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=1.5e-09 Score=91.97 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchh---HHhhccccceeeecccc
Q 046857 123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPAN---LLRCLNNLARLEVRNCD 190 (439)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~L~~L~l~~~~ 190 (439)
.+++|+.|+++++. +..++... ....+++|+.|++++++ ++. .|.. .+..+++|+.|+++++.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~--~l~~l~~L~~L~l~~N~-i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLD--PLASLKSLTYLCILRNP-VTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGG--GGGGCTTCCEEECCSSG-GGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCc-CCcchhhH--hhhcCCCCCEEEecCCC-CCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 35566666666443 34333200 01356777788877763 443 3433 47778899999888764
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.84 E-value=1.4e-08 Score=90.04 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=95.5
Q ss_pred ceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCccCccceeecCceeeecCcCchhhhhhhhh-hc
Q 046857 45 KVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MI 122 (439)
Q Consensus 45 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~ 122 (439)
+.++.++ .++..++. ...++|++|+++++. +..+ |..+..+++|++|+++++.+ +.++.. +.
T Consensus 22 ~~v~c~~-~~l~~ip~----~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l----------~~i~~~~~~ 85 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPA----GIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQL----------GALPVGVFD 85 (229)
T ss_dssp TEEECTT-SCCSSCCS----CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC----------CCCCTTTTT
T ss_pred CEeEccC-CCcCccCC----CCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCC----------CCcChhhcc
Confidence 3455554 23344432 234889999999864 4544 66678889999999988443 333322 34
Q ss_pred CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccc
Q 046857 123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELN 202 (439)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 202 (439)
.+++|+.|+++++. +..++... ...+++|+.|+++++ .++. +|.. +..+++|++|+++++ .+..++. .
T Consensus 86 ~l~~L~~L~Ls~N~-l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~-lp~~-~~~l~~L~~L~L~~N-~l~~~~~-~--- 153 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQ-LTVLPSAV---FDRLVHLKELFMCCN-KLTE-LPRG-IERLTHLTHLALDQN-QLKSIPH-G--- 153 (229)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCS-CCTT-GGGCTTCSEEECCSS-CCCCCCT-T---
T ss_pred cCCCcCEEECCCCc-CCccChhH---hCcchhhCeEeccCC-cccc-cCcc-cccCCCCCEEECCCC-cCCccCH-H---
Confidence 68889999998664 65554432 135788999999886 4554 5665 678899999999875 4544432 1
Q ss_pred cccCcccccccccceEecCCcc
Q 046857 203 ADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 203 ~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
.+..+ ++|+.|++.+++
T Consensus 154 ----~~~~l-~~L~~L~l~~N~ 170 (229)
T 3e6j_A 154 ----AFDRL-SSLTHAYLFGNP 170 (229)
T ss_dssp ----TTTTC-TTCCEEECTTSC
T ss_pred ----HHhCC-CCCCEEEeeCCC
Confidence 11223 888999988764
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.84 E-value=9.2e-09 Score=89.62 Aligned_cols=153 Identities=13% Similarity=0.123 Sum_probs=105.7
Q ss_pred ccccCceEEEccccccceeccc-cccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGH-VGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ 86 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 86 (439)
..++|++|++++|. +..++.. +. .+++|++|++++ .++..++.. .+..+++|++|+++++ .+..++.
T Consensus 26 ~~~~l~~L~l~~n~-l~~~~~~~~~--------~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~ 93 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSLPNGVFD--------ELTSLTQLYLGG-NKLQSLPNG-VFNKLTSLTYLNLSTN-QLQSLPN 93 (208)
T ss_dssp CCTTCSEEECCSSC-CCCCCTTTTT--------TCTTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCCcEEEcCCCc-cCcCChhhhc--------ccccCcEEECCC-CccCccChh-hcCCCCCcCEEECCCC-cCCccCH
Confidence 35689999999996 4444432 23 588999999999 344444321 2467899999999996 5666665
Q ss_pred C-CcCccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 87 G-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 87 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
. +..+++|++|+++++.+. .++.. +..+++|+.|+++++. +..++... ...+++|++|++.++.
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQ----------SLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGV---FDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSCC
T ss_pred hHhcCccCCCEEEcCCCcCc----------ccCHhHhccCCcCCEEECCCCc-cceeCHHH---hccCCCccEEEecCCC
Confidence 4 688999999999995433 23222 4568999999999764 55544432 1358999999999873
Q ss_pred ccccccchhHHhhccccceeeeccccccchh
Q 046857 165 NMSSAIPANLLRCLNNLARLEVRNCDSLEEM 195 (439)
Q Consensus 165 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 195 (439)
+. ..+++|+.|++..+.....+
T Consensus 160 -~~--------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 160 -WD--------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp -BC--------CCTTTTHHHHHHHHHCTTTB
T ss_pred -ee--------cCCCCHHHHHHHHHhCCcee
Confidence 22 22466777877765433333
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=2.1e-08 Score=95.27 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=92.8
Q ss_pred ceEEEccccccceeccccccccccccccccccceeeccccccccccccccCcc-CCCCccEEeeccCCCccccc-cCCcC
Q 046857 13 VNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTL-EFPSLERVSMTRCPNMKTFS-QGIVS 90 (439)
Q Consensus 13 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~L~~L~l~~c~~l~~l~-~~~~~ 90 (439)
+.+++.++ .+..+|..+ .+.++.|++++ .++..++... +. .+++|++|+++++ .+..++ ..+..
T Consensus 21 ~~l~c~~~-~l~~iP~~~----------~~~l~~L~Ls~-N~l~~l~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSL----------PSYTALLDLSH-NNLSRLRAEW-TPTRLTNLHSLLLSHN-HLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSS-CCSSCCSSC----------CTTCSEEECCS-SCCCEECTTS-SSSCCTTCCEEECCSS-CCCEECTTTTTT
T ss_pred CEEEeCCC-CcCccCccC----------CCCCCEEECCC-CCCCccChhh-hhhcccccCEEECCCC-cCCccChhhccC
Confidence 45666554 355555432 34678888888 3444443221 33 6788888888885 566555 44777
Q ss_pred ccCccceeecCceeeecCcCchhhhhhhh-hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccc
Q 046857 91 TPKLHEVQEEGELCRWEGNLNSTIQKCYE-EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSA 169 (439)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 169 (439)
+++|++|++++|.+. .++. .+..+++|+.|+++++. +..+.... ...+++|+.|+++++ .++.
T Consensus 87 l~~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~---~~~l~~L~~L~L~~N-~l~~- 150 (361)
T 2xot_A 87 VPNLRYLDLSSNHLH----------TLDEFLFSDLQALEVLLLYNNH-IVVVDRNA---FEDMAQLQKLYLSQN-QISR- 150 (361)
T ss_dssp CTTCCEEECCSSCCC----------EECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCS-
T ss_pred CCCCCEEECCCCcCC----------cCCHHHhCCCcCCCEEECCCCc-ccEECHHH---hCCcccCCEEECCCC-cCCe-
Confidence 888888888884433 2222 24467888888888655 55543322 135788888888775 4554
Q ss_pred cchhHH---hhccccceeeeccccccchh
Q 046857 170 IPANLL---RCLNNLARLEVRNCDSLEEM 195 (439)
Q Consensus 170 ~~~~~~---~~l~~L~~L~l~~~~~l~~~ 195 (439)
+|...+ ..+++|++|+++++ .+..+
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 178 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSN-KLKKL 178 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSS-CCCCC
T ss_pred eCHHHhcCcccCCcCCEEECCCC-CCCcc
Confidence 455544 56788888888875 44443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.81 E-value=8.3e-09 Score=86.60 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCCCccEEeeccCCCcc--ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCcee-ec
Q 046857 66 EFPSLERVSMTRCPNMK--TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKE-IW 142 (439)
Q Consensus 66 ~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-i~ 142 (439)
..++|++|++++|. +. .+|..+..+++|++|++++|.+... ..+..+++|+.|+++++. +.. ++
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~ 88 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-----------SNLPKLPKLKKLELSENR-IFGGLD 88 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-----------SSCCCCSSCCEEEEESCC-CCSCCC
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-----------hhhccCCCCCEEECcCCc-CchHHH
Confidence 35778888888864 55 6777778888888888888553322 234467888888888665 332 22
Q ss_pred CCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccccccccccCcccccccccceEecCC
Q 046857 143 HGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTLID 222 (439)
Q Consensus 143 ~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 222 (439)
... ..+++|+.|+++++ .+++......+..+++|++|+++++. +..++... ...+..+ ++|+.|++.+
T Consensus 89 ~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~-----~~~~~~l-~~L~~L~l~~ 156 (168)
T 2ell_A 89 MLA----EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYR-----ESVFKLL-PQLTYLDGYD 156 (168)
T ss_dssp HHH----HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHH-----HHHHTTC-SSCCEETTEE
T ss_pred HHH----hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHH-----HHHHHhC-ccCcEecCCC
Confidence 211 24788888888886 45553221346778888888888763 33332200 0011123 8888888888
Q ss_pred cc
Q 046857 223 LP 224 (439)
Q Consensus 223 ~~ 224 (439)
+.
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.80 E-value=4.5e-08 Score=86.03 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=79.8
Q ss_pred cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeecccccccccc
Q 046857 213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDE 292 (439)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~ 292 (439)
++++.|+++++ .++.++... ...+++|+.|++.++ .+..+.+. .
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~--~~~l~~L~~L~Ls~N-~i~~~~~~--------------------------------~ 75 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGA--FSPYKKLRRIDLSNN-QISELAPD--------------------------------A 75 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTS--STTCTTCCEEECCSS-CCCEECTT--------------------------------T
T ss_pred cCCCEEECCCC-cCCCcCHhH--hhCCCCCCEEECCCC-cCCCcCHH--------------------------------H
Confidence 56777777665 344333211 125566777776663 33333222 2
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccc-cCCCccCCCcceEEEccCCCcccccChhHH
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKL-VPPSWHLENLWGLQVSKCHGLINVLTLSAS 371 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~ 371 (439)
...+++|++|+++++ .++.++...+. .+++|++|+++++. ++.+ +..+..+++|++|+++++ +++.+ +...+
T Consensus 76 ~~~l~~L~~L~Ls~N-~l~~l~~~~f~---~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~ 148 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGN-KITELPKSLFE---GLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTI-AKGTF 148 (220)
T ss_dssp TTTCSSCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTT
T ss_pred hhCCcCCCEEECCCC-cCCccCHhHcc---CCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEE-CHHHH
Confidence 335678888888774 46655544333 67788888888764 4444 455667888888888874 57776 43345
Q ss_pred hhccccceEEEccc
Q 046857 372 KNLVNLGRMKIVDC 385 (439)
Q Consensus 372 ~~l~~L~~L~l~~c 385 (439)
..+++|+.|++.++
T Consensus 149 ~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 149 SPLRAIQTMHLAQN 162 (220)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hCCCCCCEEEeCCC
Confidence 66788888888775
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.80 E-value=3.9e-08 Score=86.46 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=79.1
Q ss_pred cccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeecccccccccc
Q 046857 213 PRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDE 292 (439)
Q Consensus 213 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~ 292 (439)
+.++.|+++++ .++.+.... ....+++|+.|++.++ .+..+++. .
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~--------------------------------~ 76 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATG-IFKKLPQLRKINFSNN-KITDIEEG--------------------------------A 76 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCC-CGGGCTTCCEEECCSS-CCCEECTT--------------------------------T
T ss_pred CCCCEEEcCCC-cCCccCchh-hhccCCCCCEEECCCC-cCCEECHH--------------------------------H
Confidence 45677777765 343332111 1235667777777663 34444322 2
Q ss_pred ccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCCccCCCcceEEEccCCCcccccChhHHh
Q 046857 293 KVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 293 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
...+++|+.|+++++ .++.+....+. .+++|++|+++++..-...+..+..+++|++|+++++ +++.+.|. .+.
T Consensus 77 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~ 150 (220)
T 2v70_A 77 FEGASGVNEILLTSN-RLENVQHKMFK---GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPG-AFD 150 (220)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCGGGGT---TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTT-TTT
T ss_pred hCCCCCCCEEECCCC-ccCccCHhHhc---CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHH-Hhc
Confidence 335667778887774 34544433233 6778888888776433333555667888888888874 57776444 356
Q ss_pred hccccceEEEccc
Q 046857 373 NLVNLGRMKIVDC 385 (439)
Q Consensus 373 ~l~~L~~L~l~~c 385 (439)
.+++|+.|++.++
T Consensus 151 ~l~~L~~L~L~~N 163 (220)
T 2v70_A 151 TLHSLSTLNLLAN 163 (220)
T ss_dssp TCTTCCEEECCSC
T ss_pred CCCCCCEEEecCc
Confidence 7788888888765
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=5.9e-08 Score=90.91 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=46.2
Q ss_pred CccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcc-eEEEccCCCcccccChhHHhhc
Q 046857 297 PQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLW-GLQVSKCHGLINVLTLSASKNL 374 (439)
Q Consensus 297 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~-~L~l~~c~~l~~l~p~~~~~~l 374 (439)
++|+.+++.++ .++.++...+. .+++|+++++.+. ++.++... ..+++|+ .+++.+ .++.+ +...+..+
T Consensus 226 ~~L~~l~L~~n-~i~~I~~~aF~---~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I-~~~aF~~c 296 (329)
T 3sb4_A 226 PNLVSLDISKT-NATTIPDFTFA---QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAI-EFGAFMGC 296 (329)
T ss_dssp TTCCEEECTTB-CCCEECTTTTT---TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEE-CTTTTTTC
T ss_pred CCCeEEECCCC-CcceecHhhhh---CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEE-chhhhhCC
Confidence 44555555432 24444444333 4455555555442 44444332 3455555 555544 35544 33334455
Q ss_pred cccceEEEcccccchhhccccccccCCCceEeccccEEe
Q 046857 375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLE 413 (439)
Q Consensus 375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~ 413 (439)
++|+.+++.+. .++.+... .+.++++|++++
T Consensus 297 ~~L~~l~l~~n-~i~~I~~~-------aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLATGD-KITTLGDE-------LFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEECSS-CCCEECTT-------TTCTTCCCCEEE
T ss_pred ccCCEEEeCCC-ccCccchh-------hhcCCcchhhhc
Confidence 55555555433 34444322 344455555544
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1.5e-08 Score=95.08 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=47.1
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcc-eEEeecCCCcccccC-CCccCCCcceEEEccCCCcccccChhHHh
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLE-RLEISECSKLQKLVP-PSWHLENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
.+++|+.+.+.+ +++.++...+. .+++|+ .+.+.+ .++.++. ....|++|+.+++.. +.++.+ +...+.
T Consensus 248 ~~~~L~~l~l~~--ni~~I~~~aF~---~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I-~~~aF~ 318 (329)
T 3sb4_A 248 QKKYLLKIKLPH--NLKTIGQRVFS---NCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTL-GDELFG 318 (329)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTT---TCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEE-CTTTTC
T ss_pred CCCCCCEEECCc--ccceehHHHhh---CChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCcc-chhhhc
Confidence 445677777765 26666555454 666777 777765 4555553 334677777777755 456665 444455
Q ss_pred hccccceEE
Q 046857 373 NLVNLGRMK 381 (439)
Q Consensus 373 ~l~~L~~L~ 381 (439)
.+++|+.++
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 566666654
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=2.1e-08 Score=84.80 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=17.9
Q ss_pred ccCCccEEEeccccccccccch-hHHhhccccceeeeccc
Q 046857 151 FFNYLAELEVDYCTNMSSAIPA-NLLRCLNNLARLEVRNC 189 (439)
Q Consensus 151 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~ 189 (439)
.+++|+.|+++++ .+++ +|. ..+..+++|++|+++++
T Consensus 86 ~l~~L~~L~L~~N-~i~~-~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVE-LGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp HCTTCCEEECCSC-CCCC-GGGGGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC-cCCc-chhhHhhhcCCCCCEEEecCC
Confidence 3455555555554 2333 222 12445555555555554
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.65 E-value=4.7e-09 Score=105.61 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=119.8
Q ss_pred CCccccCceEEEccccccceecccc-----ccccccccccccccceee-cccccccccccc---c-cCcc--CCCCccEE
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHV-----GEEVKENRIAFSNLKVLI-LDYLPRLTSFCL---E-NYTL--EFPSLERV 73 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~-----~~~~~~~~~~~~~L~~L~-l~~~~~l~~~~~---~-~~~~--~l~~L~~L 73 (439)
+++|++|++|++++|..+..++... ....++.+..+++|+.|+ ++. ..+.++.. . ..+. ....|+.|
T Consensus 368 i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L 446 (567)
T 1dce_A 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVL 446 (567)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchhhhhhhhcccccccCccCceEE
Confidence 6778999999997775322221110 001112223577788877 332 21111110 0 0011 12369999
Q ss_pred eeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccC
Q 046857 74 SMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFN 153 (439)
Q Consensus 74 ~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~ 153 (439)
+++++ .++.+|. ++.+++|+.|++++ +.+..+|..+..+++|+.|+++++. +..++ .. ..++
T Consensus 447 ~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~----------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l----~~l~ 508 (567)
T 1dce_A 447 HLAHK-DLTVLCH-LEQLLLVTHLDLSH----------NRLRALPPALAALRCLEVLQASDNA-LENVD-GV----ANLP 508 (567)
T ss_dssp ECTTS-CCSSCCC-GGGGTTCCEEECCS----------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GG----TTCS
T ss_pred EecCC-CCCCCcC-ccccccCcEeecCc----------ccccccchhhhcCCCCCEEECCCCC-CCCCc-cc----CCCC
Confidence 99996 6788887 89999999999999 3444677778889999999999765 66565 22 4689
Q ss_pred CccEEEecccccccccc-chhHHhhccccceeeeccccccchhccccccccccCcccccccccceEec
Q 046857 154 YLAELEVDYCTNMSSAI-PANLLRCLNNLARLEVRNCDSLEEMLHLEELNADKEHIGPLFPRLFSLTL 220 (439)
Q Consensus 154 ~L~~L~l~~~~~l~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 220 (439)
+|+.|+++++ .+++.. |.. +..+++|+.|+++++. +...++.. ......+|+|+.|++
T Consensus 509 ~L~~L~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~-l~~~~~~~------~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNS-LCQEEGIQ------ERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSG-GGGSSSCT------THHHHHCTTCSEEEC
T ss_pred CCcEEECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCc-CCCCccHH------HHHHHHCcccCccCC
Confidence 9999999986 566644 555 8889999999999874 44333210 011112489998864
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.63 E-value=1.5e-07 Score=80.75 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=43.2
Q ss_pred ceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcccc-ccCCcCc
Q 046857 13 VNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTF-SQGIVST 91 (439)
Q Consensus 13 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l 91 (439)
+.++++++. ++.+|... .+++++|++++. ++..++....+..+++|++|+++++ .++.+ |..+..+
T Consensus 11 ~~l~~s~~~-l~~ip~~~----------~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDI----------PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSC-CSSCCSCC----------CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTC
T ss_pred CEEEcCCCC-cCcCccCC----------CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCc
Confidence 666766653 45555432 346777777772 3333322112456777777777775 34433 5556666
Q ss_pred cCccceeecCc
Q 046857 92 PKLHEVQEEGE 102 (439)
Q Consensus 92 ~~L~~L~l~~~ 102 (439)
++|++|++++|
T Consensus 78 ~~L~~L~Ls~N 88 (192)
T 1w8a_A 78 SHIQELQLGEN 88 (192)
T ss_dssp TTCCEEECCSC
T ss_pred ccCCEEECCCC
Confidence 66666666663
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.60 E-value=1.6e-08 Score=104.93 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=54.6
Q ss_pred ccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecC
Q 046857 64 TLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWH 143 (439)
Q Consensus 64 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~ 143 (439)
+..+++|+.|++++| .+..+|..+..+++|++|++++| .+..+|..+..+++|+.|+|+++. +..++.
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N----------~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~ 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN----------SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA 287 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS----------CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC----------cCcccChhhhCCCCCCEEeCcCCc-CCccCh
Confidence 344555666666654 34455555555666666666552 222344444555566666665443 334433
Q ss_pred CCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 144 GQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 144 ~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
.. ..+++|+.|+++++ .++. +|.. +..+++|++|+++++
T Consensus 288 ~~----~~l~~L~~L~L~~N-~l~~-lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 288 EL----GSCFQLKYFYFFDN-MVTT-LPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp SG----GGGTTCSEEECCSS-CCCC-CCSS-TTSCTTCCCEECTTS
T ss_pred hh----cCCCCCCEEECCCC-CCCc-cChh-hhcCCCccEEeCCCC
Confidence 22 34555666666554 3433 3444 555566666666654
No 129
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.59 E-value=2.4e-08 Score=83.37 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=43.4
Q ss_pred CcceEEeecCCCccc-ccCCCccCCCcceEEEccCCCcccccChhHHh---hccccceEEEcccccchhhccccccccCC
Q 046857 326 NLERLEISECSKLQK-LVPPSWHLENLWGLQVSKCHGLINVLTLSASK---NLVNLGRMKIVDCKMMEEIIQSQVGEETE 401 (439)
Q Consensus 326 ~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~p~~~~~---~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 401 (439)
.|++|++++|. +++ -...+..+++|++|++++|.++++..-..+.. ..++|+.|++++|+.+++...+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------- 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------- 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------
Confidence 45555555554 322 11223455666666666666555542221211 0235666666666555554332
Q ss_pred CceEeccccEEecCCCCCcc
Q 046857 402 DCIVFGKLRYLELDCLPSLT 421 (439)
Q Consensus 402 ~~~~l~~L~~l~l~~c~~l~ 421 (439)
.+.++++|++|++++||+++
T Consensus 134 ~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCC
T ss_pred HHhcCCCCCEEECCCCCCCC
Confidence 34445666666666666554
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.54 E-value=2.8e-07 Score=79.11 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=82.3
Q ss_pred ceeeccccccccccccccCccCCCCccEEeeccCCCccccccC--CcCccCccceeecCceeeecCcCchhhhhhhhhhc
Q 046857 45 KVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG--IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMI 122 (439)
Q Consensus 45 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 122 (439)
+++++++ .++.+++.. -.++|++|+++++ .++.++.. ++.+++|++|+++++.+... .|..+.
T Consensus 11 ~~l~~s~-~~l~~ip~~----~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRD----IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGI---------EPNAFE 75 (192)
T ss_dssp TEEECTT-SCCSSCCSC----CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCB---------CTTTTT
T ss_pred CEEEcCC-CCcCcCccC----CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCc---------CHhHcC
Confidence 5667776 334444321 2348999999985 56766653 77888999999888443321 134455
Q ss_pred CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccc
Q 046857 123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDS 191 (439)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 191 (439)
++++|++|+++++. +..++... ...+++|++|+++++ .++...|.. +..+++|++|+++++..
T Consensus 76 ~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 76 GASHIQELQLGENK-IKEISNKM---FLGLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCTTCCEEECCSCC-CCEECSSS---STTCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCCB
T ss_pred CcccCCEEECCCCc-CCccCHHH---hcCCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCCc
Confidence 67888888888655 55554332 135788888888875 566544443 67788888888887643
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.53 E-value=1.1e-09 Score=94.79 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=47.9
Q ss_pred cCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCC
Q 046857 65 LEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHG 144 (439)
Q Consensus 65 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~ 144 (439)
..+++|++|++++| .++.+| .+..+++|++|++++|.+. .+|..+..+++|+.|+++++. +..++.
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~----------~l~~~~~~~~~L~~L~L~~N~-l~~l~~- 110 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIK----------KIENLDAVADTLEELWISYNQ-IASLSG- 110 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEEC----------SCSSHHHHHHHCSEEEEEEEE-CCCHHH-
T ss_pred hcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcc----------cccchhhcCCcCCEEECcCCc-CCcCCc-
Confidence 34555555555553 344444 4445555555555553322 111122223445555555442 333221
Q ss_pred CCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 145 QALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 145 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
. ..+++|+.|+++++ .+++..+...+..+++|++|+++++
T Consensus 111 ~----~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 111 I----EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp H----HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred c----ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 1 23555666666554 2333111123555666666666655
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.52 E-value=3e-07 Score=78.98 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=16.7
Q ss_pred cCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
+++|+.|+++++ .++. ++...+..+++|++|++.++
T Consensus 101 l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 101 LKSLRLLSLHGN-DISV-VPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSS-CCCB-CCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCC-CCCe-eChhhhhcCccccEEEeCCC
Confidence 455555555543 2332 23333444555555555543
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=1.8e-05 Score=75.82 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=48.6
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhh
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKN 373 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~ 373 (439)
..++|+.+.+.. .++.+....+. .+++|+.+.+.+ .++.+... ..+|.+|+.+.+.. .++.+ +...+..
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~---~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I-~~~aF~~ 364 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFE---SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKI-GANAFQG 364 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTT---TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEE-CTTTBTT
T ss_pred cccccccccccc--ccceechhhhc---CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEe-hHHHhhC
Confidence 345677776653 35555555444 567777777743 35555433 34677888887753 36665 4445566
Q ss_pred ccccceEEEcc
Q 046857 374 LVNLGRMKIVD 384 (439)
Q Consensus 374 l~~L~~L~l~~ 384 (439)
+++|+.+++..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77788777754
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.40 E-value=2.1e-07 Score=96.55 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=85.8
Q ss_pred cccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCCcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.+++|+.|+|+++ ++..++. .+..+++|++|++++| .+..+|..++.+++|++|++++| .+..+|.
T Consensus 222 ~l~~L~~L~Ls~n-~l~~l~~--~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N----------~l~~lp~ 287 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFNISA--NIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN----------RLTSLPA 287 (727)
T ss_dssp CCCCCCEEECTTS-CCSCCCG--GGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS----------CCSSCCS
T ss_pred cCCCCcEEECCCC-CCCCCCh--hhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC----------cCCccCh
Confidence 5789999999983 3344432 3668899999999996 56688988899999999999983 3445666
Q ss_pred hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchh
Q 046857 120 EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPAN 173 (439)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 173 (439)
.+..+++|+.|+++++. +..++... ..+++|+.|+++++ .++..+|..
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~----~~l~~L~~L~L~~N-~l~~~~p~~ 335 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEF----GNLCNLQFLGVEGN-PLEKQFLKI 335 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSST----TSCTTCCCEECTTS-CCCSHHHHH
T ss_pred hhcCCCCCCEEECCCCC-CCccChhh----hcCCCccEEeCCCC-ccCCCChHH
Confidence 77788999999999764 66666543 56889999999886 466544544
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.40 E-value=1.5e-06 Score=74.58 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=88.7
Q ss_pred ceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccc-cCCcCc
Q 046857 13 VNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFS-QGIVST 91 (439)
Q Consensus 13 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l 91 (439)
+.++++++. ++.+|.. ..++|++|++++ ..+..++ ..+..+++|++|+++++ .++.++ ..+..+
T Consensus 13 ~~l~~~~~~-l~~ip~~----------~~~~l~~L~L~~-n~i~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKG----------IPRDVTELYLDG-NQFTLVP--KELSNYKHLTLIDLSNN-RISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSC-CSSCCSC----------CCTTCCEEECCS-SCCCSCC--GGGGGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred CEEEcCCCC-CCcCCCC----------CCCCCCEEECCC-CcCchhH--HHhhcccCCCEEECCCC-cCCEeCHhHccCC
Confidence 567777654 6666653 246999999999 3445444 34778999999999996 566665 458889
Q ss_pred cCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccc
Q 046857 92 PKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCT 164 (439)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~ 164 (439)
++|++|++++|.+.... +..+.++++|+.|+++++. +..++.+. + ..+++|+.|++.+++
T Consensus 78 ~~L~~L~Ls~N~l~~i~---------~~~f~~l~~L~~L~L~~N~-l~~~~~~~-~--~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIP---------PRTFDGLKSLRLLSLHGND-ISVVPEGA-F--NDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSCCCBCC---------TTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCEeC---------HHHhCCCCCCCEEECCCCC-CCeeChhh-h--hcCccccEEEeCCCC
Confidence 99999999995543222 1235578999999999765 66655443 1 358899999998864
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.36 E-value=1.1e-06 Score=74.10 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=59.5
Q ss_pred cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhc
Q 046857 296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNL 374 (439)
Q Consensus 296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l 374 (439)
+++|+.|+++++ .++.+....+. .+++|++|+++++ .++.++.. +..+++|++|+++++ +++.+ +...+..+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPHGVFD---KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSL-PNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTC
T ss_pred CCCCcEEEeCCC-cccEeCHHHhc---CcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-Ccccc-CHHHhhCC
Confidence 356666666664 34444333222 5566777776665 34455443 346667777777663 45555 33334556
Q ss_pred cccceEEEcccccchhhccccccccCCCceEeccccEEecCCCC
Q 046857 375 VNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDCLP 418 (439)
Q Consensus 375 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~c~ 418 (439)
++|+.|+++++ .++.++.. .+..+++|++|++++++
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~-------~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDG-------IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred cccCEEECcCC-cceEeCHH-------HhcCCcccCEEEecCCC
Confidence 66777777666 44444331 23445666666666653
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.32 E-value=7.1e-05 Score=71.74 Aligned_cols=237 Identities=11% Similarity=0.118 Sum_probs=129.7
Q ss_pred ccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecCceeeecCcCchhhhhhhhhh
Q 046857 43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM 121 (439)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 121 (439)
+|+.+.+.. ++..+.... +.. .+|+.+.+.+ .++.++. .+..+++|+.+++..+.+ ..++...
T Consensus 136 ~L~~i~l~~--~i~~I~~~a-F~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l----------~~I~~~a 199 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMA-FFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKI----------TKLPAST 199 (401)
T ss_dssp CCSEEECCT--TCCEECTTT-TTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCC----------SEECTTT
T ss_pred CccEEEeCC--CccEECHHh-cCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcc----------eEechhh
Confidence 567766654 234433221 222 3688887775 4566653 356688888888876332 2333333
Q ss_pred cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhcccccc
Q 046857 122 IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHLEEL 201 (439)
Q Consensus 122 ~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 201 (439)
..+.+|+++.+... ++.|.... ...|++|+.+.+.. +++. ++...+.+ .+|+.+.+.. .+..+..
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~a---F~~~~~L~~l~l~~--~l~~-I~~~aF~~-~~L~~i~lp~--~i~~I~~---- 264 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQA---FLKTSQLKTIEIPE--NVST-IGQEAFRE-SGITTVKLPN--GVTNIAS---- 264 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTT---TTTCTTCCCEECCT--TCCE-ECTTTTTT-CCCSEEEEET--TCCEECT----
T ss_pred EeecccCEEEeCCc--hheehhhH---hhCCCCCCEEecCC--CccC-cccccccc-CCccEEEeCC--CccEECh----
Confidence 33577888888632 56655443 23577888888865 4554 34444555 6788887743 3333321
Q ss_pred ccccCcccccccccceEecCCccc----ccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcc
Q 046857 202 NADKEHIGPLFPRLFSLTLIDLPK----LKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLE 277 (439)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~ 277 (439)
..+..+ ++|+.+.+.+... ...+... ...+|++|+.+.+.+ .+..+....
T Consensus 265 ----~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~--~i~~I~~~a----------------- 318 (401)
T 4fdw_A 265 ----RAFYYC-PELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE--SIRILGQGL----------------- 318 (401)
T ss_dssp ----TTTTTC-TTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT--TCCEECTTT-----------------
T ss_pred ----hHhhCC-CCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC--ceEEEhhhh-----------------
Confidence 111123 7788887755321 1122222 234778888888764 354443221
Q ss_pred eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCC-CccCC-CcceEE
Q 046857 278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPP-SWHLE-NLWGLQ 355 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~-~L~~L~ 355 (439)
...+++|+.+.+.. +++.+....+. .+ +|+++.+.+.. ...++.. ...++ .++.+.
T Consensus 319 ---------------F~~c~~L~~l~lp~--~l~~I~~~aF~---~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 319 ---------------LGGNRKVTQLTIPA--NVTQINFSAFN---NT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp ---------------TTTCCSCCEEEECT--TCCEECTTSSS---SS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEE
T ss_pred ---------------hcCCCCccEEEECc--cccEEcHHhCC---CC-CCCEEEEcCCC-CcccccccccCCCCCccEEE
Confidence 22345677777743 36666555444 55 78888887653 3333322 23443 566776
Q ss_pred Ecc
Q 046857 356 VSK 358 (439)
Q Consensus 356 l~~ 358 (439)
+-.
T Consensus 377 vp~ 379 (401)
T 4fdw_A 377 VPA 379 (401)
T ss_dssp ECG
T ss_pred eCH
Confidence 643
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=4.8e-05 Score=72.91 Aligned_cols=34 Identities=9% Similarity=0.276 Sum_probs=14.4
Q ss_pred ccCCccEEEeccccccccccchhHHhhccccceeeec
Q 046857 151 FFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVR 187 (439)
Q Consensus 151 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 187 (439)
.|++|+.+++..+ +++. ++...+. ..+|+.+.+.
T Consensus 178 ~c~~L~~l~l~~n-~l~~-I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 178 YCYNLKKADLSKT-KITK-LPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp TCTTCCEEECTTS-CCSE-ECTTTTT-TCCCSEEECC
T ss_pred CcccCCeeecCCC-cceE-echhhEe-ecccCEEEeC
Confidence 3455555555432 2332 2333233 3455555544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=2.7e-06 Score=71.75 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=89.4
Q ss_pred cCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC-Cc
Q 046857 11 SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG-IV 89 (439)
Q Consensus 11 ~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~ 89 (439)
..+.++++++. +..++.. .+++|++|++++ .++..++.. .+..+++|++|+++++ .+..++.. +.
T Consensus 8 ~~~~l~~~~~~-l~~~p~~----------~~~~l~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 73 (177)
T 2o6r_A 8 SGTEIRCNSKG-LTSVPTG----------IPSSATRLELES-NKLQSLPHG-VFDKLTQLTKLSLSQN-QIQSLPDGVFD 73 (177)
T ss_dssp ETTEEECCSSC-CSSCCTT----------CCTTCSEEECCS-SCCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred CCCEEEecCCC-CccCCCC----------CCCCCcEEEeCC-CcccEeCHH-HhcCcccccEEECCCC-cceEeChhHcc
Confidence 34677777764 5555543 357999999999 334444321 2567899999999996 56777654 58
Q ss_pred CccCccceeecCceeeecCcCchhhhhhhhh-hcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEecccccccc
Q 046857 90 STPKLHEVQEEGELCRWEGNLNSTIQKCYEE-MIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSS 168 (439)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~ 168 (439)
.+++|++|+++++.+. .++.. +..+++|+.|+++++. +..++... ...+++|++|++.+++ +..
T Consensus 74 ~l~~L~~L~l~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~-~~~ 138 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQ----------SLPNGVFDKLTQLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNP-WDC 138 (177)
T ss_dssp TCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSC-BCC
T ss_pred CCCccCEEECCCCCcc----------ccCHHHhhCCcccCEEECcCCc-ceEeCHHH---hcCCcccCEEEecCCC-eec
Confidence 8999999999995443 23322 4568999999999764 65555432 1358899999999874 443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.27 E-value=1.8e-08 Score=87.09 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=45.4
Q ss_pred ccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEe
Q 046857 81 MKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEV 160 (439)
Q Consensus 81 l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l 160 (439)
++.+|..++.+++|++|++++|.+.. +| .+..+++|+.|+++++. +..++... ..+++|+.|++
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~----------l~-~~~~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~~L~L 100 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK----------IS-SLSGMENLRILSLGRNL-IKKIENLD----AVADTLEELWI 100 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC----------CC-CHHHHTTCCEEEEEEEE-ECSCSSHH----HHHHHCSEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc----------cc-ccccCCCCCEEECCCCC-cccccchh----hcCCcCCEEEC
Confidence 34444455566666666666643221 22 23345666666666543 33322211 23456666666
Q ss_pred ccccccccccchhHHhhccccceeeeccc
Q 046857 161 DYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
+++ .+++ +| . +..+++|++|+++++
T Consensus 101 ~~N-~l~~-l~-~-~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 101 SYN-QIAS-LS-G-IEKLVNLRVLYMSNN 125 (198)
T ss_dssp EEE-ECCC-HH-H-HHHHHHSSEEEESEE
T ss_pred cCC-cCCc-CC-c-cccCCCCCEEECCCC
Confidence 665 3443 23 2 555666666666654
No 141
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=4.2e-07 Score=75.78 Aligned_cols=89 Identities=10% Similarity=0.200 Sum_probs=67.7
Q ss_pred ccceEeecCCCCceeccccCCccccccCCcceEEeecCCCccccc-CCCcc----CCCcceEEEccCCCcccccChhHHh
Q 046857 298 QLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLV-PPSWH----LENLWGLQVSKCHGLINVLTLSASK 372 (439)
Q Consensus 298 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~l~p~~~~~ 372 (439)
+|+.|++++|. +++.....+. .+++|++|++++|..+++-- ..+.. +++|++|++++|.++++..-. .+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~---~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME---GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT---TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred eEeEEeCcCCC-ccHHHHHHhc---CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence 79999999986 6665544333 88999999999999887521 11222 458999999999999986333 345
Q ss_pred hccccceEEEcccccchhh
Q 046857 373 NLVNLGRMKIVDCKMMEEI 391 (439)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~~ 391 (439)
.+++|+.|++++|+.+++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCEEECCCCCCCCch
Confidence 7899999999999888764
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.21 E-value=3.3e-06 Score=70.73 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=17.8
Q ss_pred CCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccc
Q 046857 123 GFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYC 163 (439)
Q Consensus 123 ~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~ 163 (439)
.+++|+.|+++++. +..++.+. ...+++|+.|++.++
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGA---FDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc-cCEeCHHH---hcCCCCCCEEEeCCC
Confidence 34555555555432 33333221 124566666666664
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=8.8e-05 Score=71.00 Aligned_cols=78 Identities=9% Similarity=0.047 Sum_probs=49.5
Q ss_pred ccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCC
Q 046857 323 VFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETE 401 (439)
Q Consensus 323 ~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 401 (439)
.+.+|+.+.+.+ .++.+... ...|.+|+.+++.. .++.+ +...+..+.+|+.+++.. +++.+...
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~~------- 360 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEI-GKRSFRGCTSLSNINFPL--SLRKIGAN------- 360 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTT-------
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEE-hHHhccCCCCCCEEEECc--cccEehHH-------
Confidence 567888888754 35556544 34788999988853 46766 444556778888887754 24444322
Q ss_pred CceEeccccEEec
Q 046857 402 DCIVFGKLRYLEL 414 (439)
Q Consensus 402 ~~~~l~~L~~l~l 414 (439)
.+..+++|+.+.+
T Consensus 361 aF~~C~~L~~i~l 373 (394)
T 4fs7_A 361 AFQGCINLKKVEL 373 (394)
T ss_dssp TBTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEE
Confidence 4555666666655
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.21 E-value=2.7e-06 Score=71.23 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=55.2
Q ss_pred cCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCCcccccChhHHhhc
Q 046857 296 FPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHGLINVLTLSASKNL 374 (439)
Q Consensus 296 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~p~~~~~~l 374 (439)
+++|+.|+++++ .++.+....+. .+++|++|+++++ .++.++... ..+++|++|+++++ +++.+ +...+..+
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~-~~~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSI-PRGAFDNL 101 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTC
T ss_pred CCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEe-CHHHhcCC
Confidence 467788887774 45555444333 6777888888776 456666554 57778888888773 57766 44445677
Q ss_pred cccceEEEccc
Q 046857 375 VNLGRMKIVDC 385 (439)
Q Consensus 375 ~~L~~L~l~~c 385 (439)
++|+.|+++++
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 78888888765
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.20 E-value=3e-06 Score=71.34 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=60.8
Q ss_pred ccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEEccCCCcccccChhHHhh
Q 046857 295 AFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQVSKCHGLINVLTLSASKN 373 (439)
Q Consensus 295 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~p~~~~~~ 373 (439)
.+++|+.|+++++ .++.+....+. .+++|++|+++++ .++.+|... ..+++|++|++++ ++++.+ |...+..
T Consensus 31 ~~~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l-~~~~~~~ 103 (174)
T 2r9u_A 31 IPTDKQRLWLNNN-QITKLEPGVFD---HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSI-PRGAFDN 103 (174)
T ss_dssp CCTTCSEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTT
T ss_pred cCCCCcEEEeCCC-CccccCHHHhc---CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-Ccccee-CHHHhcc
Confidence 3478888888875 45655444343 6788888888886 566777654 5788888888887 467776 5444667
Q ss_pred ccccceEEEccc
Q 046857 374 LVNLGRMKIVDC 385 (439)
Q Consensus 374 l~~L~~L~l~~c 385 (439)
+++|+.|+++++
T Consensus 104 l~~L~~L~L~~N 115 (174)
T 2r9u_A 104 LKSLTHIYLYNN 115 (174)
T ss_dssp CTTCSEEECCSS
T ss_pred ccCCCEEEeCCC
Confidence 888888888876
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.13 E-value=4.4e-06 Score=70.28 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=16.6
Q ss_pred cCCccEEEeccccccccccchhHHhhccccceeeeccc
Q 046857 152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNC 189 (439)
Q Consensus 152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 189 (439)
+++|+.|+++++ .++. ++...+..+++|++|+++++
T Consensus 80 l~~L~~L~L~~N-~l~~-l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 80 LTQLTQLDLNDN-HLKS-IPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CTTCCEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSS
T ss_pred cchhhEEECCCC-ccce-eCHHHhccccCCCEEEeCCC
Confidence 445555555443 3333 23333444555555555543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=6.9e-06 Score=77.52 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=87.0
Q ss_pred cccCceEEEccccccc-eeccccccccccccccccccceeecccccccc----ccc----cccCccCCCCccEEeeccCC
Q 046857 9 PNSLVNLNVSYCEKIE-EIIGHVGEEVKENRIAFSNLKVLILDYLPRLT----SFC----LENYTLEFPSLERVSMTRCP 79 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~----~~~~~~~l~~L~~L~l~~c~ 79 (439)
.+.++.|.+..+. .. ...........+....|++|+.|.+.+.. .. .|. ....+..+|+|+.|++++|.
T Consensus 106 ~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 106 LPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp GGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred chhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 4567788888664 22 00000000000112258899999886531 11 010 11223468999999999874
Q ss_pred CccccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC-------CceeecCCCCCCcCcc
Q 046857 80 NMKTFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP-------RLKEIWHGQALPVRFF 152 (439)
Q Consensus 80 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-------~l~~i~~~~~l~~~~~ 152 (439)
.+. ++. + .+++|++|++..+.+.. ..+..+. ...+++|++|+|+... .+..+... +....+
T Consensus 184 ~l~-l~~-~-~~~~L~~L~L~~~~l~~-----~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l~~~~~ 251 (362)
T 2ra8_A 184 NLS-IGK-K-PRPNLKSLEIISGGLPD-----SVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--FSKDRF 251 (362)
T ss_dssp TCB-CCS-C-BCTTCSEEEEECSBCCH-----HHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--SCTTTC
T ss_pred Cce-ecc-c-cCCCCcEEEEecCCCCh-----HHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHH--HhcCCC
Confidence 443 443 3 38899999997744321 1111111 1257899999885311 11111110 122357
Q ss_pred CCccEEEeccccccccccchhHH--hhccccceeeeccc
Q 046857 153 NYLAELEVDYCTNMSSAIPANLL--RCLNNLARLEVRNC 189 (439)
Q Consensus 153 ~~L~~L~l~~~~~l~~~~~~~~~--~~l~~L~~L~l~~~ 189 (439)
|+|+.|++.+|. +.+..+..++ ..+++|++|+++++
T Consensus 252 p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 252 PNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp TTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred CCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCC
Confidence 889999988764 3322222222 24678888888754
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.98 E-value=1e-06 Score=83.80 Aligned_cols=168 Identities=15% Similarity=0.041 Sum_probs=81.5
Q ss_pred ccccceeeccccccccccccc---cCcc-CCCCccEEeeccCCCccc--cccCCcCccCccceeecCceeeecCcCchhh
Q 046857 41 FSNLKVLILDYLPRLTSFCLE---NYTL-EFPSLERVSMTRCPNMKT--FSQGIVSTPKLHEVQEEGELCRWEGNLNSTI 114 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~---~~~~-~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 114 (439)
+++|++|+++++. +...... ..+. ..++|++|++++|. +.. +..-...+++|++|++++|.+.. ...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-----~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGP-----EAC 143 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCH-----HHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCH-----HHH
Confidence 5677777777732 1111000 0011 23577778877764 331 22222335677777777754431 122
Q ss_pred hhhhhhhc-CCCCccEEEccCCCCceeecCCCCCCc--CccCCccEEEeccccccccccc---hhHHhhccccceeeecc
Q 046857 115 QKCYEEMI-GFRDIQYLQLSHFPRLKEIWHGQALPV--RFFNYLAELEVDYCTNMSSAIP---ANLLRCLNNLARLEVRN 188 (439)
Q Consensus 115 ~~l~~~~~-~~~~L~~L~l~~~~~l~~i~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~l~~ 188 (439)
..+...+. ..++|++|++++|. +.+..... ++. ..+++|++|++++|. +++... ...+...++|++|++++
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV-LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH-HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHH-HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 23333332 35678888887664 33211100 100 235678888887763 443211 11234556788888887
Q ss_pred ccccchhccccccccccCcccccccccceEecCCcc
Q 046857 189 CDSLEEMLHLEELNADKEHIGPLFPRLFSLTLIDLP 224 (439)
Q Consensus 189 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (439)
|. +..... ......+... ++|++|+++++.
T Consensus 221 N~-i~~~g~----~~l~~~L~~~-~~L~~L~Ls~N~ 250 (372)
T 3un9_A 221 NG-AGDTAA----LALARAAREH-PSLELLHLYFNE 250 (372)
T ss_dssp SC-CCHHHH----HHHHHHHHHC-SSCCEEECTTSS
T ss_pred CC-CCHHHH----HHHHHHHHhC-CCCCEEeccCCC
Confidence 63 332110 0000001112 778888887763
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=3.9e-06 Score=79.22 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=96.6
Q ss_pred CCccccCceEEEccccccceeccccc-cccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCcc-c
Q 046857 6 VGIPNSLVNLNVSYCEKIEEIIGHVG-EEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMK-T 83 (439)
Q Consensus 6 ~~~~~~L~~L~l~~c~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~ 83 (439)
...+++|+.|.|.+...-+.-.++.. .....-...+|+|+.|.++++..+ .+ .+ + ..++|++|++..|. +. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l--~~-~-~~~~L~~L~L~~~~-l~~~ 208 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SI--GK-K-PRPNLKSLEIISGG-LPDS 208 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BC--CS-C-BCTTCSEEEEECSB-CCHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-ee--cc-c-cCCCCcEEEEecCC-CChH
Confidence 34678999999976421100000000 000001125899999999985322 12 12 2 48999999999864 33 1
Q ss_pred cccCC--cCccCccceeecCceeeecCcCchhhhhhhhhh--cCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEE
Q 046857 84 FSQGI--VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEM--IGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELE 159 (439)
Q Consensus 84 l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~ 159 (439)
....+ ..+|+|++|+++.+.....++ ..+..+-..+ ..+++|+.|.+.+|.......... .....+++|++|+
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-a~a~~~~~L~~Ld 285 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFD--GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-LESDILPQLETMD 285 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCC--SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-HHCSSGGGCSEEE
T ss_pred HHHHHHHccCCCCcEEEEeccccccccc--hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-HhCccCCCCCEEE
Confidence 11122 368999999985321111111 1111221112 258999999998766332111100 0112589999999
Q ss_pred eccccccccccchhH---Hhhccccceeeecccc
Q 046857 160 VDYCTNMSSAIPANL---LRCLNNLARLEVRNCD 190 (439)
Q Consensus 160 l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~ 190 (439)
++.+ .+++.....+ +..+++|+.|++++|.
T Consensus 286 Ls~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 286 ISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 9764 5665322221 3567899999998774
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.78 E-value=4.4e-05 Score=71.72 Aligned_cols=9 Identities=33% Similarity=0.224 Sum_probs=4.7
Q ss_pred ccEEEeccc
Q 046857 155 LAELEVDYC 163 (439)
Q Consensus 155 L~~L~l~~~ 163 (439)
|+.|++.++
T Consensus 105 L~~l~l~~N 113 (347)
T 2ifg_A 105 LQELVLSGN 113 (347)
T ss_dssp CCEEECCSS
T ss_pred ceEEEeeCC
Confidence 555555543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.74 E-value=6.2e-05 Score=70.68 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=29.2
Q ss_pred ccccceeeccccccccccccccCccCCCCccEEeeccCCCcccccc-CCcCccCccceeecC
Q 046857 41 FSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQ-GIVSTPKLHEVQEEG 101 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 101 (439)
+++|+.|+|++..++..++.. .+..+++|++|+++++ .+..++. .+..+++|++|++++
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred CCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 445566666543344433211 1445556666666654 3444332 345556666666655
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.61 E-value=0.014 Score=55.50 Aligned_cols=301 Identities=10% Similarity=0.077 Sum_probs=150.8
Q ss_pred CCCccc-cCceEEEccccccceeccccccccccccccccccceeecccc--ccccccccccCccCCCCccEEeeccCCCc
Q 046857 5 SVGIPN-SLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYL--PRLTSFCLENYTLEFPSLERVSMTRCPNM 81 (439)
Q Consensus 5 ~~~~~~-~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 81 (439)
.|.++. .|+.+.|-+ .++.+..... ..+.+|+.+.+... +.++.+... .+..+.+|+.+.+.+ .+
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~AF-------~~C~~L~~i~~~~n~p~~l~~Ig~~-aF~~c~~L~~i~~~~--~~ 125 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSNAF-------YNCTSLKRVTIQDNKPSCVKKIGRQ-AFMFCSELTDIPILD--SV 125 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTTTT-------TTCTTCCEEEEGGGCCCCCCEECTT-TTTTCTTCCBCGGGT--TC
T ss_pred hccCCCCcCEEEEECC--CeeEEhHHHh-------hCCccCceEeecCCCCCeeeEechh-hchhcccceeeccCC--cc
Confidence 355664 588887754 3555544321 14678888888652 234444322 244567777766654 35
Q ss_pred cccccC-CcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEe
Q 046857 82 KTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEV 160 (439)
Q Consensus 82 ~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l 160 (439)
+.++.. +..+.+|+.+.+........++ .+..+..|+.+.+.+. +..+.... + ...+|+.+.+
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~~~~I~~~----------~F~~c~~L~~i~~~~~--~~~I~~~a-F---~~~~l~~i~i 189 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEGVTSVADG----------MFSYCYSLHTVTLPDS--VTAIEERA-F---TGTALTQIHI 189 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTTCCEECTT----------TTTTCTTCCEEECCTT--CCEECTTT-T---TTCCCSEEEE
T ss_pred ceehhhhhhhhcccccccccceeeeeccc----------ceecccccccccccce--eeEecccc-c---cccceeEEEE
Confidence 555533 4668888888876522111111 2335788888888643 45554433 1 2456888888
Q ss_pred ccccccccccchhHHhhccccceeeeccccccchhcc--ccccccccCccccc--ccccceEecCCcccccccccCCCcc
Q 046857 161 DYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLH--LEELNADKEHIGPL--FPRLFSLTLIDLPKLKRFCNFTGNI 236 (439)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~ 236 (439)
.. .++. +....+..+..++......... ..... .............. ...+..+.+. ..++.+... ..
T Consensus 190 p~--~~~~-i~~~af~~c~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~v~~i~~~--aF 261 (394)
T 4gt6_A 190 PA--KVTR-IGTNAFSECFALSTITSDSESY-PAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--NGVARIETH--AF 261 (394)
T ss_dssp CT--TCCE-ECTTTTTTCTTCCEEEECCSSS-CBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--TTEEEECTT--TT
T ss_pred CC--cccc-cccchhhhccccceeccccccc-ccccceeecccccccccccccccccccceEEcC--CcceEcccc--ee
Confidence 55 3333 2233356667777665543211 10000 00000000000000 0111111111 011111111 11
Q ss_pred cCCCCccEEeEecCCCcceeccccccccccCCCCCCccCcceeeeeccccccccccccccCccceEeecCCCCceecccc
Q 046857 237 IEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQKLTLEEYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKE 316 (439)
Q Consensus 237 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 316 (439)
..|++|+.+.+.+ .+..+... +....++|+.+.+.. .++.+...
T Consensus 262 ~~c~~L~~i~lp~--~~~~I~~~--------------------------------aF~~c~~L~~i~l~~--~i~~I~~~ 305 (394)
T 4gt6_A 262 DSCAYLASVKMPD--SVVSIGTG--------------------------------AFMNCPALQDIEFSS--RITELPES 305 (394)
T ss_dssp TTCSSCCEEECCT--TCCEECTT--------------------------------TTTTCTTCCEEECCT--TCCEECTT
T ss_pred eecccccEEeccc--ccceecCc--------------------------------ccccccccccccCCC--cccccCce
Confidence 2445555555433 11111111 122345666666642 45555555
Q ss_pred CCccccccCCcceEEeecCCCcccccCC-CccCCCcceEEEccCCCcccccChhHHhhccccceEEEccc
Q 046857 317 NDESNKVFANLERLEISECSKLQKLVPP-SWHLENLWGLQVSKCHGLINVLTLSASKNLVNLGRMKIVDC 385 (439)
Q Consensus 317 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~p~~~~~~l~~L~~L~l~~c 385 (439)
.+. .+++|+++.+.+ .++.+... ...|.+|+.+.+-. .++.+ ....+..+++|+.+++.+.
T Consensus 306 aF~---~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I-~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 306 VFA---GCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKI-PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTT---TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBC-CGGGGTTCTTCCEEEESSC
T ss_pred eec---CCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEE-hHhHhhCCCCCCEEEECCc
Confidence 444 667888888753 35555443 34688888888853 46665 5555677888888888764
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.56 E-value=0.019 Score=54.54 Aligned_cols=296 Identities=11% Similarity=0.105 Sum_probs=151.5
Q ss_pred ccceeeccccccccccccccCccCCCCccEEeeccC--CCccccccC-CcCccCccceeecCceeeecCcCchhhhhhhh
Q 046857 43 NLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRC--PNMKTFSQG-IVSTPKLHEVQEEGELCRWEGNLNSTIQKCYE 119 (439)
Q Consensus 43 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c--~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 119 (439)
.|+++.+-. .++.+... .+..+.+|+.+.+.+. ..++.++.. +..+.+|+.+.+.... ..+..
T Consensus 65 ~L~sI~iP~--svt~Ig~~-AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~-----------~~I~~ 130 (394)
T 4gt6_A 65 VLTSVQIPD--TVTEIGSN-AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV-----------TEIDS 130 (394)
T ss_dssp CCCEEEECT--TCCEECTT-TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC-----------SEECT
T ss_pred cCEEEEECC--CeeEEhHH-HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc-----------ceehh
Confidence 477777754 34444322 2567899999999763 356666543 5668888888765522 11111
Q ss_pred -hhcCCCCccEEEccCCCCceeecCCCCCCcCccCCccEEEeccccccccccchhHHhhccccceeeeccccccchhccc
Q 046857 120 -EMIGFRDIQYLQLSHFPRLKEIWHGQALPVRFFNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDSLEEMLHL 198 (439)
Q Consensus 120 -~~~~~~~L~~L~l~~~~~l~~i~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 198 (439)
.+..+.+|+.+.+... +..+.... ...+.+|+.+.+.. .++. +....+. ..+|+.+.+... +..+..
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~---F~~c~~L~~i~~~~--~~~~-I~~~aF~-~~~l~~i~ip~~--~~~i~~- 198 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGM---FSYCYSLHTVTLPD--SVTA-IEERAFT-GTALTQIHIPAK--VTRIGT- 198 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTT---TTTCTTCCEEECCT--TCCE-ECTTTTT-TCCCSEEEECTT--CCEECT-
T ss_pred hhhhhhcccccccccce--eeeecccc---eecccccccccccc--eeeE-ecccccc-ccceeEEEECCc--cccccc-
Confidence 2346889999999643 44444433 24688999998865 4544 2333344 356888877642 111110
Q ss_pred cccccccCcccccccccceEecCCcccccccccCCCcccCCCCccEEeEecCCCcceeccccccccccCCCCCC-ccCcc
Q 046857 199 EELNADKEHIGPLFPRLFSLTLIDLPKLKRFCNFTGNIIEMPMLWSLTIENCPDMETFISNSVVHVTTDNKEPQ-KLTLE 277 (439)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~-~~~l~ 277 (439)
...... .+++........ .+.........+......... ......+..+. -+.+.
T Consensus 199 -------~af~~c-~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ip~~v~ 254 (394)
T 4gt6_A 199 -------NAFSEC-FALSTITSDSES--------------YPAIDNVLYEKSANGDYALIR--YPSQREDPAFKIPNGVA 254 (394)
T ss_dssp -------TTTTTC-TTCCEEEECCSS--------------SCBSSSCEEEECTTSCEEEEE--CCTTCCCSEEECCTTEE
T ss_pred -------chhhhc-cccceecccccc--------------cccccceeecccccccccccc--cccccccceEEcCCcce
Confidence 000001 333333222110 000000000000000000000 00000000000 00000
Q ss_pred eeeeeccccccccccccccCccceEeecCCCCceeccccCCccccccCCcceEEeecCCCcccccCCC-ccCCCcceEEE
Q 046857 278 EYFLLAHQVQPLFDEKVAFPQLRKLRLSGLHKVQHLWKENDESNKVFANLERLEISECSKLQKLVPPS-WHLENLWGLQV 356 (439)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l 356 (439)
.+ ...+.....+|+.+.+.. .+..+....+. .++.|+.+.+. ..++.++... ..|.+|+.+++
T Consensus 255 ~i---------~~~aF~~c~~L~~i~lp~--~~~~I~~~aF~---~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 255 RI---------ETHAFDSCAYLASVKMPD--SVVSIGTGAFM---NCPALQDIEFS--SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp EE---------CTTTTTTCSSCCEEECCT--TCCEECTTTTT---TCTTCCEEECC--TTCCEECTTTTTTCTTCCEEEC
T ss_pred Ec---------ccceeeecccccEEeccc--ccceecCcccc---cccccccccCC--CcccccCceeecCCCCcCEEEe
Confidence 00 000122335667776643 34444444343 67889988885 3466666544 47899999999
Q ss_pred ccCCCcccccChhHHhhccccceEEEcccccchhhccccccccCCCceEeccccEEecCC
Q 046857 357 SKCHGLINVLTLSASKNLVNLGRMKIVDCKMMEEIIQSQVGEETEDCIVFGKLRYLELDC 416 (439)
Q Consensus 357 ~~c~~l~~l~p~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~L~~l~l~~ 416 (439)
.. .++.+ ....+..+.+|+.+.+.. +++.+... .+.++++|+.+.+.+
T Consensus 319 p~--~v~~I-~~~aF~~C~~L~~i~ip~--sv~~I~~~-------aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 319 PE--GITQI-LDDAFAGCEQLERIAIPS--SVTKIPES-------AFSNCTALNNIEYSG 366 (394)
T ss_dssp CT--TCCEE-CTTTTTTCTTCCEEEECT--TCCBCCGG-------GGTTCTTCCEEEESS
T ss_pred CC--cccEe-hHhHhhCCCCCCEEEECc--ccCEEhHh-------HhhCCCCCCEEEECC
Confidence 64 47776 555567889999999854 35555432 566778888887654
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.41 E-value=2.5e-05 Score=74.09 Aligned_cols=169 Identities=15% Similarity=0.073 Sum_probs=103.2
Q ss_pred cccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccc-----
Q 046857 9 PNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKT----- 83 (439)
Q Consensus 9 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~----- 83 (439)
.++|+.|+|++|..-..-...+.... ....++|++|+++++. +.+.........+++|++|++++| .+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L---~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVL---GSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHH---SSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHH---hhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence 56899999999974332222211110 0023699999999942 222111111234678999999997 4542
Q ss_pred cccCC-cCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceeecCCCCCC--cCccCCccEEEe
Q 046857 84 FSQGI-VSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEIWHGQALP--VRFFNYLAELEV 160 (439)
Q Consensus 84 l~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i~~~~~l~--~~~~~~L~~L~l 160 (439)
+...+ ...++|++|++++|.+.. .....+...+...++|++|+++++. +.+..... +. ....++|++|++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~-----~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~-L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTA-----AGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLEL-LAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHH-----HHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHH-HHHHGGGCSCCCEEEC
T ss_pred HHHHHHhcCCccceeeCCCCCCCh-----HHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHH-HHHHHhcCCCcCeEEC
Confidence 22222 246889999999966442 2344566666678999999999776 44321000 00 024678999999
Q ss_pred ccccccccccchh---HHhhccccceeeecccc
Q 046857 161 DYCTNMSSAIPAN---LLRCLNNLARLEVRNCD 190 (439)
Q Consensus 161 ~~~~~l~~~~~~~---~~~~l~~L~~L~l~~~~ 190 (439)
++| .+++..... .+...++|++|++++|.
T Consensus 219 s~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 219 AYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 997 455432222 24456899999999874
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.09 E-value=0.05 Score=51.27 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=25.7
Q ss_pred cccceeeccccccccccccccCccCCCCccEEeeccCCCccccccCC-cCccCccceee
Q 046857 42 SNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQGI-VSTPKLHEVQE 99 (439)
Q Consensus 42 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l 99 (439)
.+|+.+.+.. .++.+... .+..+.+|+.+.+.+ .++.++... ..+ +|+.+.+
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~-aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~ 98 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEA-NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTG 98 (379)
T ss_dssp GGCSEEEECT--TEEEECTT-TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEE
T ss_pred cCCEEEEeCC--CccChHHH-HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEEC
Confidence 4555555543 33333222 245567777777754 355555432 223 4555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.92 E-value=0.00096 Score=56.34 Aligned_cols=114 Identities=12% Similarity=0.102 Sum_probs=57.6
Q ss_pred cCCCCccEEeeccCCCcc-----ccccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCce
Q 046857 65 LEFPSLERVSMTRCPNMK-----TFSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLK 139 (439)
Q Consensus 65 ~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 139 (439)
...++|++|++++|..+. .+...+...++|++|++++|.+.. .....+...+...++|++|+++++. +.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~-----~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-----PVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-----HHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh-----HHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 345667777777653333 133344455667777776654332 1222333444445667777777554 32
Q ss_pred e-----ecCCCCCCcCccCCccEEEe--ccccccccccch---hHHhhccccceeeeccc
Q 046857 140 E-----IWHGQALPVRFFNYLAELEV--DYCTNMSSAIPA---NLLRCLNNLARLEVRNC 189 (439)
Q Consensus 140 ~-----i~~~~~l~~~~~~~L~~L~l--~~~~~l~~~~~~---~~~~~l~~L~~L~l~~~ 189 (439)
+ +.... ...++|++|++ .++ .+++.... ..+...++|++|++++|
T Consensus 107 ~~g~~~l~~~L----~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 107 GSGILALVEAL----QSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHGG----GGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHHH----HhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 1 11111 23456777777 443 34332111 12344467777777765
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.83 E-value=0.17 Score=47.55 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=40.2
Q ss_pred ccccCceEEEccccccceeccccccccccccccccccceeeccccccccccccccCccCCCCccEEeeccCCCccccccC
Q 046857 8 IPNSLVNLNVSYCEKIEEIIGHVGEEVKENRIAFSNLKVLILDYLPRLTSFCLENYTLEFPSLERVSMTRCPNMKTFSQG 87 (439)
Q Consensus 8 ~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 87 (439)
...+|+.+.+.+ +++.+.... +..+.+|+.+.+.. .+..+.... +..+ +|+.+.+-. .++.++..
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~a-------F~~C~~L~~I~lp~--~v~~Ig~~a-F~~c-~l~~i~~~~--~l~~I~~~ 108 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEAN-------FNSCYNMTKVTVAS--TVTSIGDGA-FADT-KLQSYTGME--RVKKFGDY 108 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTT-------TTTCTTCCEEEECT--TCCEECTTT-TTTC-CCCEEEECT--TCCEECTT
T ss_pred cccCCEEEEeCC--CccChHHHH-------hhCCCCCCEEEeCC--cceEechhh-hcCC-CCceEECCc--eeeEeccc
Confidence 344555555542 344444321 22467888888854 344443221 2333 566665543 45556554
Q ss_pred CcCccCccceeecC
Q 046857 88 IVSTPKLHEVQEEG 101 (439)
Q Consensus 88 ~~~l~~L~~L~l~~ 101 (439)
.-...+|+.+.+..
T Consensus 109 aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 109 VFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTCCCSEEECCT
T ss_pred eeccCCcccccCCC
Confidence 43344677776654
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.68 E-value=0.00066 Score=57.35 Aligned_cols=117 Identities=10% Similarity=0.074 Sum_probs=69.3
Q ss_pred cccccceeeccccccccccc---cccCccCCCCccEEeeccCCCccc-----cccCCcCccCccceeecCceeeecCcCc
Q 046857 40 AFSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNMKT-----FSQGIVSTPKLHEVQEEGELCRWEGNLN 111 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 111 (439)
..+.|++|+++++..+.+-. ....+...++|++|++++|. +.. +...+...++|++|++++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~----- 107 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISG----- 107 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCH-----
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCH-----
Confidence 46778888888752332211 11223456788888888864 442 33444556788889988865442
Q ss_pred hhhhhhhhhhcCCCCccEEEc--cCCCCceeecCCCCCC--cCccCCccEEEecccc
Q 046857 112 STIQKCYEEMIGFRDIQYLQL--SHFPRLKEIWHGQALP--VRFFNYLAELEVDYCT 164 (439)
Q Consensus 112 ~~~~~l~~~~~~~~~L~~L~l--~~~~~l~~i~~~~~l~--~~~~~~L~~L~l~~~~ 164 (439)
.....+...+...++|++|++ +++. +.+..... +. ....++|++|+++++.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~-l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEME-IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHH-HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHH-HHHHHHhCCCcCEEeccCCC
Confidence 234456666667788999999 5443 43211000 00 0235789999998863
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.19 E-value=0.0017 Score=57.99 Aligned_cols=89 Identities=16% Similarity=0.063 Sum_probs=54.1
Q ss_pred cccccceeeccccccccccccc-cCccCCCCccEEeeccCCCccccccCCcCcc--CccceeecCceeeecCcCchhhhh
Q 046857 40 AFSNLKVLILDYLPRLTSFCLE-NYTLEFPSLERVSMTRCPNMKTFSQGIVSTP--KLHEVQEEGELCRWEGNLNSTIQK 116 (439)
Q Consensus 40 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~ 116 (439)
.+++|++|+|++ .++..+... ..+..+++|+.|+++++ .++.+ ..+..+. +|++|++++|.++..- ......
T Consensus 168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~--~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTF--RDQSTY 242 (267)
T ss_dssp HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGC--SSHHHH
T ss_pred hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCcccc--CcchhH
Confidence 488999999999 333333211 12347999999999995 56655 3344455 8999999996644210 000011
Q ss_pred hhhhhcCCCCccEEEcc
Q 046857 117 CYEEMIGFRDIQYLQLS 133 (439)
Q Consensus 117 l~~~~~~~~~L~~L~l~ 133 (439)
....+..+++|+.|+=.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 11234468889888754
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.83 E-value=0.024 Score=50.59 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=55.2
Q ss_pred cCCCCccEEeeccCCCccc---cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCCCceee
Q 046857 65 LEFPSLERVSMTRCPNMKT---FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFPRLKEI 141 (439)
Q Consensus 65 ~~l~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~i 141 (439)
..+++|+.|+++++ .+.. +|..+..+++|+.|++++|.+...+.+ ..+..+ +|++|.+.+++-...+
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l--------~~l~~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL--------DKIKGL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG--------GGGTTS-CCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhh--------hhcccC-CcceEEccCCcCcccc
Confidence 46899999999996 5554 445556899999999999665432211 112234 8999999988743322
Q ss_pred cCCCC---CCcCccCCccEEEe
Q 046857 142 WHGQA---LPVRFFNYLAELEV 160 (439)
Q Consensus 142 ~~~~~---l~~~~~~~L~~L~l 160 (439)
+.... -....+|+|+.|+-
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESS
T ss_pred CcchhHHHHHHHHCcccCeECC
Confidence 21000 00135889998874
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.09 E-value=1.4 Score=36.98 Aligned_cols=65 Identities=6% Similarity=0.025 Sum_probs=29.6
Q ss_pred CCCccEEeeccCCCccc-----cccCCcCccCccceeecCceeeecCcCchhhhhhhhhhcCCCCccEEEccCCC
Q 046857 67 FPSLERVSMTRCPNMKT-----FSQGIVSTPKLHEVQEEGELCRWEGNLNSTIQKCYEEMIGFRDIQYLQLSHFP 136 (439)
Q Consensus 67 l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 136 (439)
-+.|++|++.++..+.. +-+.+..-+.|+.|++++|.+...+ ...+-+.+..-+.|++|+|+++.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g-----a~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE-----ARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH-----HTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH-----HHHHHHHHhcCCccCeEecCCCc
Confidence 35566666665433331 2233334455666666554433211 12222223334556666666443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=71.77 E-value=2.4 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=15.1
Q ss_pred CcceEEeecCCCcccccCCC-ccCCCcceEEEcc
Q 046857 326 NLERLEISECSKLQKLVPPS-WHLENLWGLQVSK 358 (439)
Q Consensus 326 ~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~ 358 (439)
+|++|+++++ .++.++... ..+++|+.|++.+
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecC
Confidence 4555555443 344444333 2445555555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=71.31 E-value=3.3 Score=32.02 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=25.2
Q ss_pred cCCccEEEeccccccccccchhHHhhccccceeeeccccc
Q 046857 152 FNYLAELEVDYCTNMSSAIPANLLRCLNNLARLEVRNCDS 191 (439)
Q Consensus 152 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 191 (439)
.++|+.|+++++ +++. ++...+..+++|+.|++.+++.
T Consensus 30 p~~l~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGN-NLTA-LPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTS-CCSS-CCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCC-cCCc-cChhhhhhccccCEEEecCCCe
Confidence 346777777774 4554 4555577777788887776543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=58.76 E-value=6.6 Score=32.81 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=54.3
Q ss_pred ccccceeeccccccccccc---cccCccCCCCccEEeeccCCCccc-----cccCCcCccCccceeecCceeeecCcCch
Q 046857 41 FSNLKVLILDYLPRLTSFC---LENYTLEFPSLERVSMTRCPNMKT-----FSQGIVSTPKLHEVQEEGELCRWEGNLNS 112 (439)
Q Consensus 41 ~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 112 (439)
-+.|+.|++++...+.+-. ....+..-..|+.|++.+|. +.. +-+.+..-+.|++|+++.|.+.. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~-----~ 113 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTP-----E 113 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCH-----H
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCH-----H
Confidence 4688889988742222110 01113345789999999974 542 33334456789999999866552 2
Q ss_pred hhhhhhhhhcCCCCccEEEccCC
Q 046857 113 TIQKCYEEMIGFRDIQYLQLSHF 135 (439)
Q Consensus 113 ~~~~l~~~~~~~~~L~~L~l~~~ 135 (439)
....+.+.+..-+.|++|+++++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 34455555555566888888743
Done!