BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046859
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 151 bits (381), Expect = 9e-37, Method: Composition-based stats.
Identities = 64/103 (62%), Positives = 86/103 (83%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK W+E
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
EED+ + +AH +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 150 bits (380), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/103 (62%), Positives = 86/103 (83%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK W+E
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
EED+ + +AH +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 86/104 (82%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK W+E
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF 314
EED+ + +AH +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 148 bits (373), Expect = 7e-36, Method: Composition-based stats.
Identities = 62/104 (59%), Positives = 86/104 (82%)
Query: 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
++VKG WT EED+ +I LV ++G ++W+ IA+ L GR+GKQCRERWHNHL P++KK W+
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
EEED+ + EAH +GN+WAEIAK LPGRT+N++KNHWN+T +R+
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 82/102 (80%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
KG WT EED+ +I V ++G ++WS IA+ L GRIGKQCRERWHNHL P++KK W+EEE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86
Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF 314
D+ + +AH +GN+WAEIAK LPGRT+N++KNHWN+T RR+
Sbjct: 87 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263
V K WT EEDR++ + + G R W+ IA++LPGR + W++ +R +
Sbjct: 77 VKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 67/104 (64%)
Query: 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEE 271
+KG +T ED L+ V + G + W I LP R KQCRERW NHL P + K W+ E
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFS 315
ED+ + + ++G+KW+ IAK +PGRT+N+IKN WN++ ++ S
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSE 270
VVK WT EED + R + G KWS IA+++PGR + RW++ I K I +
Sbjct: 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNS----SISKRISTN 106
Query: 271 EEDKALIEAHAEIGNKWAEIAKRL 294
K ++ K A++ K+L
Sbjct: 107 SNHKEILLPDRSKKRKAADVPKKL 130
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 65/99 (65%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
K ++T EED L +LV ++G + W I+Q++ R +QCRERW+N++ P ++ D WS EE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311
D L + +AE G KW +I+K L R++N+I+N W R
Sbjct: 61 DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIAR 99
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEE 272
K ++T EED +L R V Q G W IA P R +QCR+RW N+L P I W+ EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306
D L++ E G +WA IAK PGRT+ IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306
KK ++ EED+ L A A+ G+ W IA P R ++ W
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 79.3 bits (194), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 262 DIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
++KK W+EEED+ L +AH +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260
V K WT EEDR+L + + G R W+ IA++LPGR + W++ +R
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMR 51
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 43/52 (82%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
++KG WT EED+ LI+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 265 KDIWSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWN 307
K W++EED+ LI+ + G K W+ IAK L GR + W+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 78.2 bits (191), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 43/51 (84%)
Query: 263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313
+KK W+EEED+ + +AH +GN+WAEIAK LPGRT+N+IKNHWN+T RR+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260
V K WT EEDR++ + + G R W+ IA++LPGR + W++ +R
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMR 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 43/52 (82%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
++KG WT EED+ +I+LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 265 KDIWSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWN 307
K W++EED+ +I+ + G K W+ IAK L GR + W+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 76.6 bits (187), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
++KG WT EED+ +I LV ++G ++WS IA+ L GRIGKQCRERWHNHL P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 265 KDIWSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWN 307
K W++EED+ +IE + G K W+ IAK L GR + W+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 70
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 216 WTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWS 269
W ED +L V ++G +WS IA +L + KQC+ RW+ L P IKK WS
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
K +WT EED L +LV+Q G W IA LP R QC+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262
K +WT EED L +LV+Q G W IA LP R QC+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERW 255
G + K +WT EED L LV QFG + W +A P R +QC+ RW
Sbjct: 1 GSSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 216 WTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERW 255
WTTEE +LL + + + + +W IA+ +PGR K C +R+
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 268 WSEEEDKALIEAHA----EIGNKWAEIAKRLPGRTENSIKNHW 306
WS +E+KA A A + ++WA +A+ + GRT +K H+
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>pdb|1V76|A Chain A, Crystal Structure Of Archaeal Ribonuclease P Protein
Ph1771p From Pyrococcus Horikoshii Ot3
pdb|1V76|B Chain B, Crystal Structure Of Archaeal Ribonuclease P Protein
Ph1771p From Pyrococcus Horikoshii Ot3
Length = 96
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 267 IWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306
IW +D ++ E A+ G K +RL GR E +K W
Sbjct: 54 IWKVPKDVSIFEFEADDGTKIKIPGERLVGRPEMRLKKRW 93
>pdb|2ZAE|A Chain A, Crystal Structure Of Protein Ph1601p In Complex With
Protein Ph1771p Of Archaeal Ribonuclease P From
Pyrococcus Horikoshii Ot3
pdb|2ZAE|C Chain C, Crystal Structure Of Protein Ph1601p In Complex With
Protein Ph1771p Of Archaeal Ribonuclease P From
Pyrococcus Horikoshii Ot3
Length = 127
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 267 IWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306
IW +D ++ E A+ G K +RL GR E +K W
Sbjct: 85 IWKVPKDVSIFEFEADDGTKIKIPGERLVGRPEMRLKKRW 124
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 140 QVNPVDILGSDHRSHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKN-------- 191
Q N V +L DH +QL +++L +VSC A D+N
Sbjct: 937 QENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILEL 996
Query: 192 -NNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKW 236
NNR + S + K V Q+T +E + LI D I+ W
Sbjct: 997 VNNRIFQS-----RFQHKKTVWHIQFTADE-KTLISSSDDAEIQVW 1036
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,345,170
Number of Sequences: 62578
Number of extensions: 532550
Number of successful extensions: 1220
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 47
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)