Query 046859
Match_columns 458
No_of_seqs 307 out of 2066
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 3.8E-31 8.3E-36 257.5 12.1 111 208-318 4-115 (238)
2 PLN03212 Transcription repress 100.0 2.3E-30 5E-35 250.9 11.8 110 208-317 20-130 (249)
3 PLN03091 hypothetical protein; 100.0 6.4E-29 1.4E-33 256.2 11.3 111 207-317 8-119 (459)
4 KOG0049 Transcription factor, 99.9 9.1E-23 2E-27 216.6 10.4 153 155-311 306-462 (939)
5 PLN03212 Transcription repress 99.9 7.6E-23 1.6E-27 198.7 5.7 106 153-265 24-129 (249)
6 KOG0048 Transcription factor, 99.9 1.6E-22 3.6E-27 197.1 5.8 103 154-263 9-111 (238)
7 KOG0049 Transcription factor, 99.8 1.7E-21 3.6E-26 207.0 10.2 175 156-339 255-433 (939)
8 PLN03091 hypothetical protein; 99.8 1E-21 2.2E-26 203.1 6.3 104 153-263 13-116 (459)
9 PF13921 Myb_DNA-bind_6: Myb-l 99.6 1.1E-15 2.5E-20 118.2 6.1 60 216-276 1-60 (60)
10 KOG0051 RNA polymerase I termi 99.6 1.1E-14 2.4E-19 156.5 12.7 187 154-342 308-539 (607)
11 COG5147 REB1 Myb superfamily p 99.5 2.2E-14 4.7E-19 152.8 6.1 173 153-334 19-359 (512)
12 COG5147 REB1 Myb superfamily p 99.5 4.5E-14 9.8E-19 150.4 6.1 107 209-315 16-122 (512)
13 KOG0050 mRNA splicing protein 99.5 6.1E-14 1.3E-18 147.2 5.9 108 211-319 5-112 (617)
14 PF00249 Myb_DNA-binding: Myb- 99.3 8.9E-13 1.9E-17 98.2 3.5 47 213-259 1-48 (48)
15 KOG0051 RNA polymerase I termi 99.3 4.1E-12 8.8E-17 137.0 9.6 148 156-312 386-569 (607)
16 PF00249 Myb_DNA-binding: Myb- 99.3 5E-12 1.1E-16 94.2 5.5 46 265-310 1-48 (48)
17 PF13921 Myb_DNA-bind_6: Myb-l 99.1 6.7E-11 1.4E-15 91.5 5.3 46 268-313 1-46 (60)
18 smart00717 SANT SANT SWI3, AD 99.1 1.4E-10 3.1E-15 83.6 6.0 47 265-311 1-48 (49)
19 smart00717 SANT SANT SWI3, AD 99.0 2.9E-10 6.2E-15 82.0 4.8 48 213-260 1-48 (49)
20 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 1.3E-09 2.7E-14 77.6 6.0 43 267-309 1-44 (45)
21 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 1.9E-09 4.2E-14 76.6 4.4 45 215-259 1-45 (45)
22 KOG0050 mRNA splicing protein 98.8 9.8E-10 2.1E-14 116.0 0.9 130 156-294 9-149 (617)
23 KOG0457 Histone acetyltransfer 97.3 0.00033 7.1E-09 73.8 6.1 51 262-312 69-120 (438)
24 PF13325 MCRS_N: N-terminal re 97.3 0.0015 3.3E-08 63.0 9.8 97 215-313 1-129 (199)
25 TIGR01557 myb_SHAQKYF myb-like 97.2 0.00079 1.7E-08 52.7 6.0 47 264-310 2-54 (57)
26 KOG0457 Histone acetyltransfer 97.2 0.00032 6.8E-09 73.9 4.4 51 209-259 68-118 (438)
27 TIGR02894 DNA_bind_RsfA transc 97.2 0.00075 1.6E-08 62.9 6.3 52 264-316 3-61 (161)
28 TIGR01557 myb_SHAQKYF myb-like 97.2 0.00065 1.4E-08 53.2 4.8 47 213-259 3-54 (57)
29 PF13837 Myb_DNA-bind_4: Myb/S 96.8 0.0014 2.9E-08 54.0 3.9 50 265-314 1-68 (90)
30 KOG1279 Chromatin remodeling f 96.5 0.0036 7.7E-08 68.0 5.4 47 263-309 251-297 (506)
31 COG5259 RSC8 RSC chromatin rem 96.4 0.0038 8.3E-08 66.5 4.9 46 264-309 278-323 (531)
32 PF08914 Myb_DNA-bind_2: Rap1 96.4 0.0053 1.1E-07 49.3 4.6 49 265-313 2-60 (65)
33 PRK13923 putative spore coat p 96.3 0.0045 9.7E-08 58.4 4.5 51 264-315 4-61 (170)
34 PF13837 Myb_DNA-bind_4: Myb/S 95.8 0.0053 1.2E-07 50.4 2.2 48 213-260 1-65 (90)
35 COG5259 RSC8 RSC chromatin rem 95.7 0.0084 1.8E-07 64.0 3.7 46 212-258 278-323 (531)
36 TIGR02894 DNA_bind_RsfA transc 95.7 0.006 1.3E-07 57.0 2.1 51 211-262 2-58 (161)
37 KOG1279 Chromatin remodeling f 95.7 0.011 2.3E-07 64.4 4.2 46 212-258 252-297 (506)
38 PF13873 Myb_DNA-bind_5: Myb/S 95.5 0.043 9.3E-07 44.4 6.3 49 265-313 2-72 (78)
39 PF08914 Myb_DNA-bind_2: Rap1 95.5 0.016 3.4E-07 46.6 3.6 51 213-263 2-61 (65)
40 PLN03142 Probable chromatin-re 95.3 0.068 1.5E-06 62.9 9.3 99 215-313 826-987 (1033)
41 COG5114 Histone acetyltransfer 95.0 0.029 6.2E-07 57.6 4.4 49 263-311 61-110 (432)
42 COG5114 Histone acetyltransfer 94.3 0.028 6E-07 57.8 2.5 50 211-260 61-110 (432)
43 PRK13923 putative spore coat p 94.0 0.03 6.6E-07 52.9 2.0 50 211-261 3-58 (170)
44 PF13873 Myb_DNA-bind_5: Myb/S 93.9 0.06 1.3E-06 43.5 3.3 48 213-260 2-70 (78)
45 PF12776 Myb_DNA-bind_3: Myb/S 92.3 0.33 7.3E-06 40.3 5.7 47 267-313 1-65 (96)
46 KOG2656 DNA methyltransferase 91.5 0.14 3.1E-06 53.8 3.1 60 254-317 123-188 (445)
47 KOG4282 Transcription factor G 90.7 0.44 9.5E-06 49.1 5.7 51 265-315 54-118 (345)
48 PF09111 SLIDE: SLIDE; InterP 90.4 0.54 1.2E-05 42.0 5.2 52 262-313 46-113 (118)
49 KOG1194 Predicted DNA-binding 88.7 1.6 3.4E-05 47.2 7.9 51 264-314 186-236 (534)
50 PF09111 SLIDE: SLIDE; InterP 85.8 0.68 1.5E-05 41.4 2.9 51 210-260 46-111 (118)
51 COG5118 BDP1 Transcription ini 84.9 1.8 3.8E-05 45.9 5.8 49 265-313 365-413 (507)
52 COG5118 BDP1 Transcription ini 83.6 1.1 2.4E-05 47.3 3.7 44 214-258 366-409 (507)
53 KOG2656 DNA methyltransferase 82.5 2.2 4.7E-05 45.3 5.3 56 200-260 121-182 (445)
54 PF08281 Sigma70_r4_2: Sigma-7 80.5 4.4 9.4E-05 30.2 5.1 41 270-311 12-52 (54)
55 KOG4167 Predicted DNA-binding 79.8 7.2 0.00016 44.5 8.4 45 265-309 619-663 (907)
56 smart00595 MADF subfamily of S 77.9 3.9 8.4E-05 33.5 4.4 26 287-313 30-55 (89)
57 KOG1194 Predicted DNA-binding 77.4 3.2 7E-05 44.9 4.7 49 209-258 183-231 (534)
58 KOG4282 Transcription factor G 77.3 1.9 4.1E-05 44.5 2.9 48 213-260 54-114 (345)
59 PF11035 SnAPC_2_like: Small n 76.4 17 0.00038 37.8 9.4 86 213-311 21-127 (344)
60 PF12776 Myb_DNA-bind_3: Myb/S 75.4 3.7 8.1E-05 33.9 3.7 44 215-258 1-61 (96)
61 PF13404 HTH_AsnC-type: AsnC-t 74.2 7.8 0.00017 28.3 4.7 38 271-309 3-41 (42)
62 KOG4167 Predicted DNA-binding 69.8 4.5 9.6E-05 46.1 3.7 44 213-257 619-662 (907)
63 PF11626 Rap1_C: TRF2-interact 69.8 4 8.6E-05 34.2 2.6 24 209-232 43-74 (87)
64 PF11035 SnAPC_2_like: Small n 65.8 19 0.00041 37.5 7.0 50 265-314 21-74 (344)
65 PRK11179 DNA-binding transcrip 65.1 12 0.00027 34.0 5.1 46 270-316 8-54 (153)
66 PF13404 HTH_AsnC-type: AsnC-t 60.8 8.8 0.00019 28.1 2.6 38 219-257 3-40 (42)
67 PF13325 MCRS_N: N-terminal re 58.5 19 0.0004 35.2 5.2 45 267-312 1-48 (199)
68 PF04545 Sigma70_r4: Sigma-70, 58.1 26 0.00056 25.7 4.8 41 271-312 7-47 (50)
69 PRK11169 leucine-responsive tr 57.7 16 0.00036 33.7 4.5 46 270-316 13-59 (164)
70 PF11626 Rap1_C: TRF2-interact 56.4 5.9 0.00013 33.2 1.2 17 261-277 43-59 (87)
71 PF04504 DUF573: Protein of un 56.1 44 0.00094 28.8 6.6 51 266-316 5-68 (98)
72 PRK11179 DNA-binding transcrip 55.6 12 0.00025 34.2 3.2 46 218-264 8-53 (153)
73 KOG4468 Polycomb-group transcr 55.4 17 0.00037 40.8 4.8 51 265-315 88-148 (782)
74 TIGR02985 Sig70_bacteroi1 RNA 52.1 34 0.00074 29.8 5.5 41 271-312 116-156 (161)
75 PRK11169 leucine-responsive tr 48.9 13 0.00028 34.4 2.3 45 218-263 13-57 (164)
76 PF08281 Sigma70_r4_2: Sigma-7 47.2 16 0.00034 27.1 2.2 40 218-259 12-51 (54)
77 PF07750 GcrA: GcrA cell cycle 46.0 26 0.00057 32.9 3.9 40 267-307 2-41 (162)
78 PF10545 MADF_DNA_bdg: Alcohol 43.1 30 0.00064 27.3 3.3 28 286-313 28-56 (85)
79 PF01388 ARID: ARID/BRIGHT DNA 41.3 61 0.0013 26.7 5.1 37 275-311 40-89 (92)
80 KOG4468 Polycomb-group transcr 41.1 47 0.001 37.5 5.4 47 213-260 88-144 (782)
81 KOG2009 Transcription initiati 40.6 29 0.00063 38.9 3.8 47 210-257 406-452 (584)
82 TIGR02937 sigma70-ECF RNA poly 39.5 64 0.0014 27.2 5.1 43 268-312 111-153 (158)
83 PRK09643 RNA polymerase sigma 39.5 1.2E+02 0.0025 28.3 7.2 41 271-312 137-177 (192)
84 PRK09413 IS2 repressor TnpA; R 39.0 88 0.0019 27.5 6.0 46 212-260 9-54 (121)
85 cd06171 Sigma70_r4 Sigma70, re 38.9 93 0.002 21.5 5.1 42 268-311 11-52 (55)
86 smart00595 MADF subfamily of S 38.2 15 0.00033 29.9 0.9 23 235-258 29-51 (89)
87 PLN03142 Probable chromatin-re 38.0 31 0.00067 41.4 3.7 51 210-260 923-985 (1033)
88 KOG4329 DNA-binding protein [G 37.7 1.6E+02 0.0036 31.5 8.5 43 266-308 278-321 (445)
89 cd08319 Death_RAIDD Death doma 37.4 51 0.0011 27.7 4.0 29 273-302 2-30 (83)
90 smart00344 HTH_ASNC helix_turn 35.6 86 0.0019 26.3 5.2 45 271-316 3-48 (108)
91 smart00501 BRIGHT BRIGHT, ARID 34.8 90 0.002 26.0 5.1 39 274-312 35-86 (93)
92 KOG2009 Transcription initiati 33.7 39 0.00084 38.0 3.4 50 264-313 408-457 (584)
93 PF07638 Sigma70_ECF: ECF sigm 32.1 95 0.0021 29.0 5.4 42 270-312 137-178 (185)
94 cd08803 Death_ank3 Death domai 31.4 78 0.0017 26.6 4.1 31 273-304 4-34 (84)
95 PF02954 HTH_8: Bacterial regu 31.1 1.1E+02 0.0024 21.9 4.4 35 271-306 5-39 (42)
96 PF07750 GcrA: GcrA cell cycle 30.6 39 0.00086 31.7 2.5 41 215-257 2-42 (162)
97 cd08317 Death_ank Death domain 30.4 64 0.0014 26.6 3.4 29 273-302 4-32 (84)
98 PRK09652 RNA polymerase sigma 29.9 1.1E+02 0.0024 27.2 5.3 43 268-312 129-171 (182)
99 PRK11924 RNA polymerase sigma 29.9 1.1E+02 0.0023 27.2 5.2 37 275-312 132-168 (179)
100 PRK04217 hypothetical protein; 29.6 1.3E+02 0.0028 26.7 5.4 45 266-312 41-85 (110)
101 COG1522 Lrp Transcriptional re 28.0 1.1E+02 0.0024 27.1 4.9 48 270-318 7-55 (154)
102 cd08318 Death_NMPP84 Death dom 26.2 98 0.0021 25.8 3.9 27 276-303 10-36 (86)
103 PRK09641 RNA polymerase sigma 25.0 1.5E+02 0.0032 26.9 5.2 41 271-312 139-179 (187)
104 smart00344 HTH_ASNC helix_turn 23.7 88 0.0019 26.2 3.2 44 219-263 3-46 (108)
105 PRK09047 RNA polymerase factor 23.7 1.9E+02 0.0041 25.5 5.6 41 271-312 109-149 (161)
106 PF09420 Nop16: Ribosome bioge 23.7 1.5E+02 0.0033 27.5 5.1 46 264-309 113-162 (164)
107 TIGR02943 Sig70_famx1 RNA poly 23.3 1.8E+02 0.0039 27.0 5.5 42 271-313 134-175 (188)
108 TIGR02954 Sig70_famx3 RNA poly 23.3 1.7E+02 0.0037 26.3 5.2 41 271-312 122-162 (169)
109 PRK09637 RNA polymerase sigma 23.2 1.7E+02 0.0037 27.0 5.3 41 271-312 109-149 (181)
110 cd08804 Death_ank2 Death domai 23.1 1.2E+02 0.0026 25.3 3.8 31 273-304 4-34 (84)
111 COG1522 Lrp Transcriptional re 22.5 77 0.0017 28.1 2.8 44 219-263 8-51 (154)
112 PRK12523 RNA polymerase sigma 22.4 2E+02 0.0043 26.0 5.5 42 271-313 122-163 (172)
113 COG2963 Transposase and inacti 22.2 2.5E+02 0.0055 24.0 5.8 45 265-311 5-50 (116)
114 TIGR02939 RpoE_Sigma70 RNA pol 22.1 1.4E+02 0.0031 27.0 4.6 41 271-312 141-181 (190)
115 PRK09642 RNA polymerase sigma 21.8 2.1E+02 0.0046 25.3 5.5 41 271-312 109-149 (160)
116 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 21.5 2E+02 0.0044 22.1 4.4 34 272-306 8-41 (50)
117 TIGR02948 SigW_bacill RNA poly 21.2 1.8E+02 0.0039 26.3 5.0 41 271-312 139-179 (187)
118 cd08777 Death_RIP1 Death Domai 21.1 1.2E+02 0.0027 25.4 3.5 29 275-304 4-32 (86)
119 PRK09648 RNA polymerase sigma 21.0 2.1E+02 0.0046 26.2 5.5 38 274-312 145-182 (189)
120 PRK12531 RNA polymerase sigma 20.9 2.1E+02 0.0046 26.5 5.5 40 272-312 145-184 (194)
121 cd08805 Death_ank1 Death domai 20.8 1.3E+02 0.0028 25.3 3.6 34 273-307 4-40 (84)
122 PRK12512 RNA polymerase sigma 20.8 2.2E+02 0.0047 26.0 5.5 41 271-312 134-174 (184)
123 PRK12529 RNA polymerase sigma 20.6 2.2E+02 0.0049 26.0 5.5 42 271-313 130-171 (178)
124 PF13936 HTH_38: Helix-turn-he 20.6 1.1E+02 0.0023 22.3 2.7 37 266-304 3-39 (44)
125 smart00005 DEATH DEATH domain, 20.4 1.3E+02 0.0028 24.2 3.5 29 273-302 5-34 (88)
126 PRK11923 algU RNA polymerase s 20.2 2E+02 0.0043 26.4 5.1 40 272-312 142-181 (193)
127 PRK09645 RNA polymerase sigma 20.1 2.3E+02 0.005 25.5 5.4 41 271-312 121-161 (173)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=3.8e-31 Score=257.54 Aligned_cols=111 Identities=44% Similarity=0.835 Sum_probs=105.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK 286 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k 286 (458)
++.+.||+||+|||++|+++|++||.++|..||+.++ +|++++||.||.+||+|.++++.||+|||.+|+++|+.+|++
T Consensus 4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr 83 (238)
T KOG0048|consen 4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR 83 (238)
T ss_pred CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence 4556689999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhHhhhhhhc
Q 046859 287 WAEIAKRLPGRTENSIKNHWNATKRRQFSKRK 318 (458)
Q Consensus 287 Ws~IAk~lpgRT~~qcKnRw~~l~rr~~sk~k 318 (458)
|+.||++|||||+++|||+|+..++|+..+..
T Consensus 84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999988876543
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.97 E-value=2.3e-30 Score=250.94 Aligned_cols=110 Identities=37% Similarity=0.782 Sum_probs=104.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC-CCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML-PGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK 286 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L-pgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k 286 (458)
++.+++++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK 99 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence 478999999999999999999999988999999988 5999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhHhhhhhh
Q 046859 287 WAEIAKRLPGRTENSIKNHWNATKRRQFSKR 317 (458)
Q Consensus 287 Ws~IAk~lpgRT~~qcKnRw~~l~rr~~sk~ 317 (458)
|+.||+.|||||+++|||||+.++|+...+.
T Consensus 100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~ 130 (249)
T PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130 (249)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence 9999999999999999999999998876543
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.96 E-value=6.4e-29 Score=256.22 Aligned_cols=111 Identities=43% Similarity=0.872 Sum_probs=105.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCC
Q 046859 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGN 285 (458)
Q Consensus 207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~ 285 (458)
.+..++||+||+|||++|+++|.+||..+|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|+++|++||+
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn 87 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 45789999999999999999999999889999999885 99999999999999999999999999999999999999999
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHhHhhhhhh
Q 046859 286 KWAEIAKRLPGRTENSIKNHWNATKRRQFSKR 317 (458)
Q Consensus 286 kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk~ 317 (458)
+|++||+.|||||+++|||||+.++|++++.+
T Consensus 88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~ 119 (459)
T PLN03091 88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119 (459)
T ss_pred chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999876643
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.88 E-value=9.1e-23 Score=216.55 Aligned_cols=153 Identities=27% Similarity=0.401 Sum_probs=135.0
Q ss_pred CCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc
Q 046859 155 MQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR 234 (458)
Q Consensus 155 ~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~ 234 (458)
.-|+.||+..|..+|.. .+.+-...|+-++..+++|+..|...||-+.|.|.+++|+||++||.+|+.+|.+||.+
T Consensus 306 keWsEEed~kL~alV~~----~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k 381 (939)
T KOG0049|consen 306 KEWSEEEDTKLIALVKI----TSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK 381 (939)
T ss_pred hhcchhhhHHHHHHHHH----hhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence 35899999998887753 22333456666777888899999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCH---HHHHHHHHHHh
Q 046859 235 KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTE---NSIKNHWNATK 310 (458)
Q Consensus 235 nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~---~qcKnRw~~l~ 310 (458)
.|.+|-+.+|||++.|||+||.+.|....+++.||-.||+.|+.+|.+|| ++|.+||..||+||. ..||-|+-.+.
T Consensus 382 dw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k 461 (939)
T KOG0049|consen 382 DWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAK 461 (939)
T ss_pred chhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 889999999999999 44555554443
Q ss_pred H
Q 046859 311 R 311 (458)
Q Consensus 311 r 311 (458)
.
T Consensus 462 ~ 462 (939)
T KOG0049|consen 462 L 462 (939)
T ss_pred H
Confidence 3
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.87 E-value=7.6e-23 Score=198.73 Aligned_cols=106 Identities=23% Similarity=0.385 Sum_probs=90.2
Q ss_pred CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859 153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG 232 (458)
Q Consensus 153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G 232 (458)
+..|||+|||+.|..+|.+ ++. ..|..++....++|+++|||+||.++|+|.+++|+||+|||++|++++.++|
T Consensus 24 KRg~WT~EEDe~L~~lV~k----yG~--~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~G 97 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKK----EGE--GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG 97 (249)
T ss_pred cCCCCCHHHHHHHHHHHHH----hCc--ccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcc
Confidence 5678999999997666554 332 2455555444568999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCchhhhHhhhhhhccccccc
Q 046859 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK 265 (458)
Q Consensus 233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk 265 (458)
++|..||+.|||||+++||+||+.+|++.+.+
T Consensus 98 -nKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r 129 (249)
T PLN03212 98 -NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLR 129 (249)
T ss_pred -ccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHh
Confidence 89999999999999999999999998865443
No 6
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.86 E-value=1.6e-22 Score=197.07 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=89.2
Q ss_pred CCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCc
Q 046859 154 HMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGI 233 (458)
Q Consensus 154 ~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~ 233 (458)
..||+.|||..|.. +|..++.+ +|..++...+.+|++++||+||.+||+|.++||.||+|||++|++|+..+|
T Consensus 9 kGpWt~EED~~L~~----~V~~~G~~--~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G- 81 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIR----SIKSFGKH--NGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG- 81 (238)
T ss_pred CCCCChHHHHHHHH----HHHHhCCC--CcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC-
Confidence 48999999999544 45566544 665555555558999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859 234 RKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 234 ~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i 263 (458)
++|+.||++|||||++.++++|+.+|++.+
T Consensus 82 NrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl 111 (238)
T KOG0048|consen 82 NRWSLIAGRLPGRTDNEVKNHWNTHLKKKL 111 (238)
T ss_pred cHHHHHHhhCCCcCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998886433
No 7
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.85 E-value=1.7e-21 Score=207.04 Aligned_cols=175 Identities=22% Similarity=0.409 Sum_probs=152.5
Q ss_pred CCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc-
Q 046859 156 QLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR- 234 (458)
Q Consensus 156 pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~- 234 (458)
-|+.||++.|..+-. ..+...|..++...+.+|+..||-.+++..++ .+.+..||.|||.+|+.+|++...+
T Consensus 255 ~WS~EE~E~L~AiA~------A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~-~L~ekeWsEEed~kL~alV~~~~~nS 327 (939)
T KOG0049|consen 255 HWSNEEVEKLKALAE------APKFVSWPMIALNLGTNRSSYQCMEKFKTEVS-QLSEKEWSEEEDTKLIALVKITSINS 327 (939)
T ss_pred ccChHHHHHHHHHHh------ccccccHHHHHHHhCCCcchHHHHHHHHHHHH-HHHhhhcchhhhHHHHHHHHHhhccC
Confidence 488999998766643 12345677888888888999999999998876 5556799999999999999998644
Q ss_pred --cchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc-HHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 235 --KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK-WAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 235 --nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k-Ws~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
+|.+|-..||||+..|.-.||...|+|.+++|+||.+||.+|+.+|.+||++ |.+|...+|||++.|||.||...+.
T Consensus 328 hI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~ 407 (939)
T KOG0049|consen 328 HIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLN 407 (939)
T ss_pred ccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999976 9999999999999999999998877
Q ss_pred hhhhhhcccCCCccchHHHHHHHHccCC
Q 046859 312 RQFSKRKCRSKYPRASLLQDYIKSLNLD 339 (458)
Q Consensus 312 r~~sk~k~~~~~p~~~~l~~~iksl~~~ 339 (458)
+.. ++.+|.-.+..-|..+|+.+|..
T Consensus 408 ~s~--K~~rW~l~edeqL~~~V~~YG~g 433 (939)
T KOG0049|consen 408 RSA--KVERWTLVEDEQLLYAVKVYGKG 433 (939)
T ss_pred Hhh--ccCceeecchHHHHHHHHHHccc
Confidence 644 56678888888888999988865
No 8
>PLN03091 hypothetical protein; Provisional
Probab=99.84 E-value=1e-21 Score=203.12 Aligned_cols=104 Identities=20% Similarity=0.371 Sum_probs=89.3
Q ss_pred CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859 153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG 232 (458)
Q Consensus 153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G 232 (458)
...+|+.|||+.|..+|.+ ++. ..|..++..+.++|+++|||+||.++|+|.+++|+||+|||++|+++++++|
T Consensus 13 rKg~WTpEEDe~L~~~V~k----yG~--~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~G 86 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITK----YGH--GCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLG 86 (459)
T ss_pred cCCCCCHHHHHHHHHHHHH----hCc--CCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhC
Confidence 5568999999997666554 432 3555555455568999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i 263 (458)
.+|.+||+.||||++++||+||+.+|++.+
T Consensus 87 -nKWskIAk~LPGRTDnqIKNRWnslLKKkl 116 (459)
T PLN03091 87 -NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116 (459)
T ss_pred -cchHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998887643
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.60 E-value=1.1e-15 Score=118.17 Aligned_cols=60 Identities=53% Similarity=1.089 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHH
Q 046859 216 WTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKAL 276 (458)
Q Consensus 216 WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~L 276 (458)
||+|||++|+++|..|| .+|..||+.|+.|++.+|+.||.++|++.+++++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 7999999999669999999999999999999999999999987
No 10
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.58 E-value=1.1e-14 Score=156.46 Aligned_cols=187 Identities=19% Similarity=0.350 Sum_probs=140.4
Q ss_pred CCCCCcccccchhhhhhhhhhhhccC---------CCcc-------hhhcccccCCCChhHHHHHHHhcCCCCC-CCCCC
Q 046859 154 HMQLDFQEMKPVNFLVSDEVSCVSAG---------NGYY-------KKAGMDKNNNRAYHSVRKTMKIGKKSNV-VKGQW 216 (458)
Q Consensus 154 ~~pwt~EEdk~l~~vv~e~V~~~s~~---------~~~~-------~~v~~~~~~~Rt~kqCR~RW~~~Lkp~l-kkG~W 216 (458)
..-|+.||++.+..+|.++....+-. -.+| |.-.....+-|+..+....-++..+|-- .+|.|
T Consensus 308 ~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~w 387 (607)
T KOG0051|consen 308 LKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKW 387 (607)
T ss_pred hhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCC
Confidence 35688999999998888777654332 1111 1111222334777777664444445533 99999
Q ss_pred CHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccc--ccCCCChHHHHHHHHHHH-------Hh----
Q 046859 217 TTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI--KKDIWSEEEDKALIEAHA-------EI---- 283 (458)
Q Consensus 217 T~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i--kk~~WT~EED~~Llelv~-------k~---- 283 (458)
|+||++.|..+|.++| +.|..|++.| ||.+..|++||+++....- +++.||.||.+.|+++|. ++
T Consensus 388 t~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n 465 (607)
T KOG0051|consen 388 TPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASN 465 (607)
T ss_pred CcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999 8999999999 9999999999999998874 899999999999999996 33
Q ss_pred ---------------CCcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhhhcccCCCccchHHHHHHHHccCCCCC
Q 046859 284 ---------------GNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLNLDAAG 342 (458)
Q Consensus 284 ---------------G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk~k~~~~~p~~~~l~~~iksl~~~~~~ 342 (458)
+.+|..|+..+..|+..||+.+|..++.+................|.+.+..+++....
T Consensus 466 ~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~ 539 (607)
T KOG0051|consen 466 TDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES 539 (607)
T ss_pred cchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence 24699999999999999999999999887754433332223445666667777666433
No 11
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.49 E-value=2.2e-14 Score=152.78 Aligned_cols=173 Identities=24% Similarity=0.379 Sum_probs=144.0
Q ss_pred CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859 153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG 232 (458)
Q Consensus 153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G 232 (458)
...+|+..||..+..++.++ + ...|-++++.... |++++|+.||.+++.|.++++.|+.|||+.|+.+..++|
T Consensus 19 k~gsw~~~EDe~l~~~vk~l----~--~nnws~vas~~~~-~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~ 91 (512)
T COG5147 19 KGGSWKRTEDEDLKALVKKL----G--PNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG 91 (512)
T ss_pred cCCCCCCcchhHHHHHHhhc----c--cccHHHHHHHhcc-cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcC
Confidence 44589999999998888542 2 1234455555444 899999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCchhhhHhhhhhhccccc-------------------------------------------------
Q 046859 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDI------------------------------------------------- 263 (458)
Q Consensus 233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i------------------------------------------------- 263 (458)
..|..||..+++|+..+|.+||.+.+.+..
T Consensus 92 -~~wstia~~~d~rt~~~~~ery~~~~~~~~s~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~ 170 (512)
T COG5147 92 -TQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRV 170 (512)
T ss_pred -chhhhhccccCccchHHHHHHHHHHhhhhhccccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHc
Confidence 789999999999999999999985442210
Q ss_pred --------------------------------------------------------------------------------
Q 046859 264 -------------------------------------------------------------------------------- 263 (458)
Q Consensus 264 -------------------------------------------------------------------------------- 263 (458)
T Consensus 171 ~rv~~~~vk~~~~~~~~~~~~~~~qem~~~~~~s~~~~~~~~~~~~~~k~f~~~~~~~~e~~i~~~~~~~~~sr~q~~~~ 250 (512)
T COG5147 171 PRVSKADVKPREKGEENNPDIEDLQEMKELKSASITRHLILPSKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCER 250 (512)
T ss_pred ccchHhhhhHHhhcccccccHHHHHHHhHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHhcccHHHHHhh
Confidence
Q ss_pred ---------------------------------------ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 046859 264 ---------------------------------------KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKN 304 (458)
Q Consensus 264 ---------------------------------------kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKn 304 (458)
.++.||.+|+..|..++.++|..|..|++.+ +|-++.|++
T Consensus 251 Iws~~~~~~~f~~n~~~~l~~R~~ksiy~~~rrky~~f~~~~~wt~e~~~eL~~~~~~~~~~w~~ig~~~-~rmp~~crd 329 (512)
T COG5147 251 IWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKEEEQELAKLVVEHGGSWTEIGKLL-GRMPNDCRD 329 (512)
T ss_pred ccccccccccccchhhcccccccccchHHHHHHhhhHHhhhccCccccccccccccccccchhhHhhhhh-ccCcHHHHH
Confidence 4567999999999999999999999999999 999999999
Q ss_pred HHHHHhHhhhhhhcccCCCccchHHHHHHH
Q 046859 305 HWNATKRRQFSKRKCRSKYPRASLLQDYIK 334 (458)
Q Consensus 305 Rw~~l~rr~~sk~k~~~~~p~~~~l~~~ik 334 (458)
||+..++...+..+.+|..++...|...+-
T Consensus 330 ~wr~~~~~g~t~~~~~ws~eee~~l~~vv~ 359 (512)
T COG5147 330 RWRDYVKCGDTLKRNRWSIEEEELLDKVVN 359 (512)
T ss_pred HHhhhccccCccCCCCCchhhhhhHHHHHH
Confidence 999999998666667777766666655554
No 12
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.46 E-value=4.5e-14 Score=150.37 Aligned_cols=107 Identities=37% Similarity=0.657 Sum_probs=101.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHH
Q 046859 209 SNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWA 288 (458)
Q Consensus 209 p~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs 288 (458)
-.++.|.|+..||+.|..+|+.+|.++|++||..+.-|+++||+.||++++.|.+++..|+.|||..|+.+..++|.+|+
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ws 95 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS 95 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhh
Confidence 35677899999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859 289 EIAKRLPGRTENSIKNHWNATKRRQFS 315 (458)
Q Consensus 289 ~IAk~lpgRT~~qcKnRw~~l~rr~~s 315 (458)
.||..+++||..+|.+||..++....+
T Consensus 96 tia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 96 TIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhccccCccchHHHHHHHHHHhhhhhc
Confidence 999999999999999999988876655
No 13
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=6.1e-14 Score=147.21 Aligned_cols=108 Identities=32% Similarity=0.597 Sum_probs=102.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHH
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEI 290 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~I 290 (458)
++.|.|+.-||+.|..+|.+||.+.|++|++.++..+.+||+.||..+|+|.+++..|+.|||++|+.+.......|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhHhhhhhhcc
Q 046859 291 AKRLPGRTENSIKNHWNATKRRQFSKRKC 319 (458)
Q Consensus 291 Ak~lpgRT~~qcKnRw~~l~rr~~sk~k~ 319 (458)
|..+ |||.+||-.||+.++-...++...
T Consensus 85 a~i~-gr~~~qc~eRy~~ll~~~~s~~~~ 112 (617)
T KOG0050|consen 85 ADIM-GRTSQQCLERYNNLLDVYVSYHYH 112 (617)
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence 9999 999999999999999877665443
No 14
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.32 E-value=8.9e-13 Score=98.24 Aligned_cols=47 Identities=47% Similarity=0.980 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhc
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL 259 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L 259 (458)
|++||+|||++|+++|.++|..+|..||..|| +||+.||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999666999999999 999999999999875
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.32 E-value=4.1e-12 Score=136.96 Aligned_cols=148 Identities=22% Similarity=0.363 Sum_probs=117.8
Q ss_pred CCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHHH----
Q 046859 156 QLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNV--VKGQWTTEEDRLLIRLVD---- 229 (458)
Q Consensus 156 pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~l--kkG~WT~EED~~Ll~lV~---- 229 (458)
.|++||++.|..++.+ + ++.| ..+..+.. |.+..||.||+++.+++- ++|.||.||.++|+++|+
T Consensus 386 ~wt~ee~eeL~~l~~~----~---g~~W-~~Ig~~lg-r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~ 456 (607)
T KOG0051|consen 386 KWTPEEEEELKKLVVE----H---GNDW-KEIGKALG-RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIR 456 (607)
T ss_pred CCCcchHHHHHHHHHH----h---cccH-HHHHHHHc-cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHH
Confidence 3678999987666654 2 2344 44444443 999999999999999984 999999999999999996
Q ss_pred ---Hh------------------CcccchhhhccCCCCchhhhHhhhhhhc-ccccccCCCCh-HHHHHHHHHHHHhC--
Q 046859 230 ---QF------------------GIRKWSHIAQMLPGRIGKQCRERWHNHL-RPDIKKDIWSE-EEDKALIEAHAEIG-- 284 (458)
Q Consensus 230 ---~~------------------G~~nW~~IA~~LpgRt~~Qcr~RW~~~L-~p~ikk~~WT~-EED~~Llelv~k~G-- 284 (458)
++ -.-+|..|++.+..|+..|||-+|..++ ++..+...|.. .+...|++-+..++
T Consensus 457 ~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~ 536 (607)
T KOG0051|consen 457 EALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLT 536 (607)
T ss_pred HhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccc
Confidence 22 1126999999999999999999999877 55567777876 45566777776665
Q ss_pred ----CcHHHHHhhCCCCC-HHHHHHHHHHHhHh
Q 046859 285 ----NKWAEIAKRLPGRT-ENSIKNHWNATKRR 312 (458)
Q Consensus 285 ----~kWs~IAk~lpgRT-~~qcKnRw~~l~rr 312 (458)
..|..|+...||.. +.+|+.+|..+...
T Consensus 537 e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~ 569 (607)
T KOG0051|consen 537 EESPIDWKSLAEYAPGESTGEELRLQFERLKKK 569 (607)
T ss_pred cCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhc
Confidence 35999999999998 99999999988766
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.28 E-value=5e-12 Score=94.21 Aligned_cols=46 Identities=39% Similarity=0.795 Sum_probs=41.7
Q ss_pred cCCCChHHHHHHHHHHHHhCCc-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 046859 265 KDIWSEEEDKALIEAHAEIGNK-WAEIAKRLP-GRTENSIKNHWNATK 310 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~k-Ws~IAk~lp-gRT~~qcKnRw~~l~ 310 (458)
|++||+|||++|+++|.+||.. |..||..+| +||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999998764
No 17
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.13 E-value=6.7e-11 Score=91.47 Aligned_cols=46 Identities=37% Similarity=0.752 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
||+|||++|+++|.+||++|..||+.|+.||..+|++||...++..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~ 46 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPK 46 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCccc
Confidence 9999999999999999999999999996699999999999966543
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.11 E-value=1.4e-10 Score=83.61 Aligned_cols=47 Identities=47% Similarity=0.876 Sum_probs=44.4
Q ss_pred cCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 265 KDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
+++||++||.+|+.++.+|| .+|..||..+++||..+|++||..+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998764
No 19
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.03 E-value=2.9e-10 Score=82.05 Aligned_cols=48 Identities=58% Similarity=1.172 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
+++||++||.+|+.++..+|..+|..||..+++|++.+|+.||.++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999997799999999999999999999998765
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.97 E-value=1.3e-09 Score=77.60 Aligned_cols=43 Identities=47% Similarity=0.914 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859 267 IWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNAT 309 (458)
Q Consensus 267 ~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l 309 (458)
+||++|+..|++++.++| .+|..||..+++||..+|++||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 9999999999999999999999875
No 21
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.89 E-value=1.9e-09 Score=76.62 Aligned_cols=45 Identities=56% Similarity=1.092 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859 215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL 259 (458)
Q Consensus 215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L 259 (458)
+||++|+..|+.++..+|..+|..||..+++|++.+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999779999999999999999999998753
No 22
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=9.8e-10 Score=116.03 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=94.3
Q ss_pred CCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCccc
Q 046859 156 QLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRK 235 (458)
Q Consensus 156 pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~n 235 (458)
-|+..||+.+...|.. ++ .+-|.. ++......+++||+.||..+++|.+++.-|+.|||++|+.+..... ..
T Consensus 9 vwrntEdeilkaav~k----yg--~nqws~-i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p-~q 80 (617)
T KOG0050|consen 9 VWRNTEDEVLKAAVMK----YG--KNQWSR-IASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEP-TQ 80 (617)
T ss_pred eecccHHHHHHHHHHH----cc--hHHHHH-HHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcC-Cc
Confidence 4777777776655544 32 123444 4444455899999999999999999999999999999999999998 89
Q ss_pred chhhhccCCCCchhhhHhhhhhhcccccccC----------CCChHHH-HHHHHHHHHhCCcHHHHHhhC
Q 046859 236 WSHIAQMLPGRIGKQCRERWHNHLRPDIKKD----------IWSEEED-KALIEAHAEIGNKWAEIAKRL 294 (458)
Q Consensus 236 W~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~----------~WT~EED-~~Llelv~k~G~kWs~IAk~l 294 (458)
|..||..| ||++.||-+||.++|.....+. -|-.|=| ..+...+.--|..|..+-..|
T Consensus 81 wrtIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eM 149 (617)
T KOG0050|consen 81 WRTIADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEM 149 (617)
T ss_pred cchHHHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCccccccccCCcccchHHHHHH
Confidence 99999999 9999999999998874332211 2333333 334445555556666666655
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.33 E-value=0.00033 Score=73.81 Aligned_cols=51 Identities=25% Similarity=0.496 Sum_probs=45.9
Q ss_pred ccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 262 DIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 262 ~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
.+-...||.+|+.+|++++..|| ++|..||.+++.||..+||.+|.++.-.
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 34567899999999999999999 9999999999999999999999876543
No 24
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.30 E-value=0.0015 Score=63.02 Aligned_cols=97 Identities=28% Similarity=0.502 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHhCcccchhhhccCC---CCchhhhHhhhhhhcc-ccc--------------------ccCCCCh
Q 046859 215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLP---GRIGKQCRERWHNHLR-PDI--------------------KKDIWSE 270 (458)
Q Consensus 215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp---gRt~~Qcr~RW~~~L~-p~i--------------------kk~~WT~ 270 (458)
+|++++|-+|+.+|..-. .-..|+..++ .-|...+.+||+.+|. |.+ .+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998765 6677776654 5678899999998773 222 4678999
Q ss_pred HHHHHHHHHHHHhC---CcHHHHHhh----C-CCCCHHHHHHHHHHHhHhh
Q 046859 271 EEDKALIEAHAEIG---NKWAEIAKR----L-PGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 271 EED~~Llelv~k~G---~kWs~IAk~----l-pgRT~~qcKnRw~~l~rr~ 313 (458)
+|++.|........ ..+.+|=.. | ++||+.++.++|..+.+..
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 99999999776554 247777432 4 7899999999999776654
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.25 E-value=0.00079 Score=52.67 Aligned_cols=47 Identities=17% Similarity=0.507 Sum_probs=40.7
Q ss_pred ccCCCChHHHHHHHHHHHHhCC-cH---HHHHhhCC-CC-CHHHHHHHHHHHh
Q 046859 264 KKDIWSEEEDKALIEAHAEIGN-KW---AEIAKRLP-GR-TENSIKNHWNATK 310 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~-kW---s~IAk~lp-gR-T~~qcKnRw~~l~ 310 (458)
.+-.||+||..++++++..+|. .| ..|+..+. .| |..||+.+.....
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999996 99 99999873 45 9999999987654
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.21 E-value=0.00032 Score=73.94 Aligned_cols=51 Identities=24% Similarity=0.678 Sum_probs=47.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859 209 SNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL 259 (458)
Q Consensus 209 p~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L 259 (458)
-.+-...||.+|+-+|++++..||.+||..||.++..|+..+|+++|.+++
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 356677899999999999999999999999999999999999999998765
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.20 E-value=0.00075 Score=62.92 Aligned_cols=52 Identities=31% Similarity=0.547 Sum_probs=45.9
Q ss_pred ccCCCChHHHHHHHHHHHHhC-------CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 264 KKDIWSEEEDKALIEAHAEIG-------NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G-------~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
+.+.||.|||.+|-+.|.+|= .....+++.| +||..+|-=|||+.+|+++..
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence 457899999999999998873 2389999999 999999999999999988743
No 28
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.18 E-value=0.00065 Score=53.15 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccc---hhhhccCC-CC-chhhhHhhhhhhc
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRKW---SHIAQMLP-GR-IGKQCRERWHNHL 259 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~nW---~~IA~~Lp-gR-t~~Qcr~RW~~~L 259 (458)
+-.||+||..+.+++++.+|..+| ..|++.|. .| |..||+.+.+.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999996699 99999875 45 9999999998764
No 29
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.81 E-value=0.0014 Score=53.97 Aligned_cols=50 Identities=36% Similarity=0.649 Sum_probs=36.0
Q ss_pred cCCCChHHHHHHHHHHHH------hC--C------cHHHHHhhC----CCCCHHHHHHHHHHHhHhhh
Q 046859 265 KDIWSEEEDKALIEAHAE------IG--N------KWAEIAKRL----PGRTENSIKNHWNATKRRQF 314 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k------~G--~------kWs~IAk~l----pgRT~~qcKnRw~~l~rr~~ 314 (458)
|..||.+|...||+++.+ ++ + .|..||..| ..||..||++||+.+.++..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk 68 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK 68 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 457999999999999987 21 1 399999986 35999999999999877653
No 30
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.48 E-value=0.0036 Score=67.98 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=43.4
Q ss_pred cccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859 263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT 309 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l 309 (458)
..+..||++|..+|+++|..||..|.+||.++.+||..+|--+|..+
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999999998654
No 31
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.40 E-value=0.0038 Score=66.51 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=42.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT 309 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l 309 (458)
....||.+|..+|++.|..||..|.+||++++.||..||--||..+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 3458999999999999999999999999999999999999999664
No 32
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.40 E-value=0.0053 Score=49.31 Aligned_cols=49 Identities=29% Similarity=0.487 Sum_probs=32.7
Q ss_pred cCCCChHHHHHHHHHHHHhC--------Cc-HHHHHhhCC-CCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIG--------NK-WAEIAKRLP-GRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G--------~k-Ws~IAk~lp-gRT~~qcKnRw~~l~rr~ 313 (458)
|.++|.|||+.|++.|.++. ++ |.+++..-+ .+|-.+.|+||...++.+
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 46899999999999997652 22 999999877 999999999998877764
No 33
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=96.33 E-value=0.0045 Score=58.43 Aligned_cols=51 Identities=27% Similarity=0.527 Sum_probs=44.3
Q ss_pred ccCCCChHHHHHHHHHHHHhCCc-------HHHHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNK-------WAEIAKRLPGRTENSIKNHWNATKRRQFS 315 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~k-------Ws~IAk~lpgRT~~qcKnRw~~l~rr~~s 315 (458)
+.+.||.|||.+|-+.|..|+.. ...++..| +||..+|.-||+..+|+++.
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye 61 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ 61 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence 46789999999999999888732 67778888 99999999999999998764
No 34
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.84 E-value=0.0053 Score=50.44 Aligned_cols=48 Identities=38% Similarity=0.779 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHH--h----C--c-----ccchhhhccCC----CCchhhhHhhhhhhcc
Q 046859 213 KGQWTTEEDRLLIRLVDQ--F----G--I-----RKWSHIAQMLP----GRIGKQCRERWHNHLR 260 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~--~----G--~-----~nW~~IA~~Lp----gRt~~Qcr~RW~~~L~ 260 (458)
|..||.+|...|+.++.. + + . .-|..||..|. .||+.||+.+|.++.+
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~ 65 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK 65 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 347999999999999877 1 1 0 13999998873 6999999999998653
No 35
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.74 E-value=0.0084 Score=64.01 Aligned_cols=46 Identities=20% Similarity=0.498 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH 258 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~ 258 (458)
....||.+|..+|++.++.|| ..|.+||.++..|+..||-.|+.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 455899999999999999999 8999999999999999999999654
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.69 E-value=0.006 Score=57.01 Aligned_cols=51 Identities=27% Similarity=0.483 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---c---ccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFG---I---RKWSHIAQMLPGRIGKQCRERWHNHLRPD 262 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G---~---~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ 262 (458)
.+...||.|||.+|.+.|-+|- . .-...+++.| +||+..|.=||+.++++.
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkq 58 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQ 58 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHH
Confidence 4567899999999999998773 1 1378899988 999999999999998754
No 37
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.66 E-value=0.011 Score=64.41 Aligned_cols=46 Identities=22% Similarity=0.588 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH 258 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~ 258 (458)
.++.||.+|..+|++.|..|| .+|.+||.++.+||..||-.++.++
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence 467899999999999999999 8999999999999999999998764
No 38
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.51 E-value=0.043 Score=44.36 Aligned_cols=49 Identities=35% Similarity=0.561 Sum_probs=40.9
Q ss_pred cCCCChHHHHHHHHHHHHhC----C-------------cHHHHHhhC-----CCCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIG----N-------------KWAEIAKRL-----PGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G----~-------------kWs~IAk~l-----pgRT~~qcKnRw~~l~rr~ 313 (458)
+..||.+|...|++++.+|. + .|..|+..| +.||..+++.+|..++..-
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999873 1 299999886 3599999999999987754
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.48 E-value=0.016 Score=46.57 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------cccchhhhccCC-CCchhhhHhhhhhhccccc
Q 046859 213 KGQWTTEEDRLLIRLVDQFG--------IRKWSHIAQMLP-GRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G--------~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L~p~i 263 (458)
|.+||.|||++|+..|.++. ..=|..+++.-+ .+|-.+-|+||.+.|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 46899999999999997653 112999998878 8899999999999987643
No 40
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.28 E-value=0.068 Score=62.86 Aligned_cols=99 Identities=17% Similarity=0.356 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhh----hhh---------c----------------------
Q 046859 215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERW----HNH---------L---------------------- 259 (458)
Q Consensus 215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW----~~~---------L---------------------- 259 (458)
.||.-+=...+.++.+||..+-..||..|.|++...|+.+. .++ +
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888889999977889999999889887776432 110 0
Q ss_pred ---------------ccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhh------------CCCCCHHHHHHHHHHHhH
Q 046859 260 ---------------RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKR------------LPGRTENSIKNHWNATKR 311 (458)
Q Consensus 260 ---------------~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~------------lpgRT~~qcKnRw~~l~r 311 (458)
-+..++..+|+|||.-|+-++.+|| ++|.+|... +..||+..|..|-..+++
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 0112345699999999999999999 789999544 357999999999999987
Q ss_pred hh
Q 046859 312 RQ 313 (458)
Q Consensus 312 r~ 313 (458)
-.
T Consensus 986 ~~ 987 (1033)
T PLN03142 986 LI 987 (1033)
T ss_pred HH
Confidence 65
No 41
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.96 E-value=0.029 Score=57.64 Aligned_cols=49 Identities=29% Similarity=0.586 Sum_probs=44.5
Q ss_pred cccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
+-...|+.+|+.+|++.....| ++|..||..++.|+...||.+|..+.-
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 3456799999999999999999 999999999999999999999987755
No 42
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.28 E-value=0.028 Score=57.76 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
+-...|+..|+-+|++.+...|.+||.-||..++.|+...||.+|..++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 44457999999999999999999999999999999999999999987654
No 43
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.98 E-value=0.03 Score=52.93 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcc------cchhhhccCCCCchhhhHhhhhhhccc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFGIR------KWSHIAQMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G~~------nW~~IA~~LpgRt~~Qcr~RW~~~L~p 261 (458)
.++..||.|||.+|.+.|-.++.. -...++..| +|+..+|..||+..++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk 58 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRK 58 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHH
Confidence 467789999999998888887622 155666777 89999999999888874
No 44
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.86 E-value=0.06 Score=43.51 Aligned_cols=48 Identities=31% Similarity=0.564 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCc----------------ccchhhhccC-----CCCchhhhHhhhhhhcc
Q 046859 213 KGQWTTEEDRLLIRLVDQFGI----------------RKWSHIAQML-----PGRIGKQCRERWHNHLR 260 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~----------------~nW~~IA~~L-----pgRt~~Qcr~RW~~~L~ 260 (458)
+..||++|...|++++.++.. .-|..|+..| +.|+..+++.+|.++..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 467999999999999988731 1399999877 26999999999998654
No 45
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=92.35 E-value=0.33 Score=40.25 Aligned_cols=47 Identities=32% Similarity=0.674 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHHHHh---CC----------cHHHHHhhC---CC--CCHHHHHHHHHHHhHhh
Q 046859 267 IWSEEEDKALIEAHAEI---GN----------KWAEIAKRL---PG--RTENSIKNHWNATKRRQ 313 (458)
Q Consensus 267 ~WT~EED~~Llelv~k~---G~----------kWs~IAk~l---pg--RT~~qcKnRw~~l~rr~ 313 (458)
.||++++..|++++.+. |+ .|..|+..| +| .|..||++||..+.+.-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y 65 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY 65 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 49999999999998654 21 299999886 33 67899999999887764
No 46
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=91.54 E-value=0.14 Score=53.82 Aligned_cols=60 Identities=25% Similarity=0.448 Sum_probs=50.4
Q ss_pred hhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhh-----CCC-CCHHHHHHHHHHHhHhhhhhh
Q 046859 254 RWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKR-----LPG-RTENSIKNHWNATKRRQFSKR 317 (458)
Q Consensus 254 RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~-----lpg-RT~~qcKnRw~~l~rr~~sk~ 317 (458)
-|..+|+. ..||.+|-.-|.++++.|.-+|..||.+ ++. ||-..+|.||..+.|+..+.+
T Consensus 123 EYe~~l~d----n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 123 EYEAHLND----NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred HHHHhhcc----ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 35555543 6899999999999999999999999988 666 999999999999888766543
No 47
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.74 E-value=0.44 Score=49.13 Aligned_cols=51 Identities=31% Similarity=0.540 Sum_probs=41.3
Q ss_pred cCCCChHHHHHHHHHHHHh----------CCcHHHHHhhC----CCCCHHHHHHHHHHHhHhhhh
Q 046859 265 KDIWSEEEDKALIEAHAEI----------GNKWAEIAKRL----PGRTENSIKNHWNATKRRQFS 315 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~----------G~kWs~IAk~l----pgRT~~qcKnRw~~l~rr~~s 315 (458)
...|+.+|-..||++..+. +.-|..||+.+ --||+.+||+||..+.++..+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999998753 23499999954 249999999999999887654
No 48
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=90.38 E-value=0.54 Score=42.04 Aligned_cols=52 Identities=27% Similarity=0.457 Sum_probs=41.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhCC----cHHHHHhh------------CCCCCHHHHHHHHHHHhHhh
Q 046859 262 DIKKDIWSEEEDKALIEAHAEIGN----KWAEIAKR------------LPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 262 ~ikk~~WT~EED~~Llelv~k~G~----kWs~IAk~------------lpgRT~~qcKnRw~~l~rr~ 313 (458)
..++..||++||.-|+-++.+||- .|..|... +..||+..|..|-..+++-.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 556788999999999999999995 79988765 35699999999999988753
No 49
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=88.68 E-value=1.6 Score=47.16 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=46.3
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQF 314 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~ 314 (458)
-...||.||-.++-++...||....+|.+.||.|+-.++...|....+.+.
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~ 236 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE 236 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence 456799999999999999999999999999999999999999988876653
No 50
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=85.80 E-value=0.68 Score=41.39 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=38.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCc---ccchhhhccC------------CCCchhhhHhhhhhhcc
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGI---RKWSHIAQML------------PGRIGKQCRERWHNHLR 260 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~L------------pgRt~~Qcr~RW~~~L~ 260 (458)
...+..||.+||..|+-++.++|- +.|..|-..+ ..||+..+..|-..++.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 666789999999999999999997 7898886544 25888888877766543
No 51
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=84.94 E-value=1.8 Score=45.86 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=44.4
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
..+||.+|-++...+....|...+.||..+|.|...|||.+|..--|+.
T Consensus 365 ~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~n 413 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVN 413 (507)
T ss_pred CCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhC
Confidence 4579999999999999999999999999999999999999997755544
No 52
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=83.64 E-value=1.1 Score=47.26 Aligned_cols=44 Identities=20% Similarity=0.468 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859 214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH 258 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~ 258 (458)
-+||.+|-++..++....| ..++.||..+|.|..+|++.+|.+-
T Consensus 366 ~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHHH
Confidence 4799999999999999999 7999999999999999999999753
No 53
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=82.47 E-value=2.2 Score=45.32 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=46.5
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhcc-----CCC-CchhhhHhhhhhhcc
Q 046859 200 RKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQM-----LPG-RIGKQCRERWHNHLR 260 (458)
Q Consensus 200 R~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~-----Lpg-Rt~~Qcr~RW~~~L~ 260 (458)
..-|..+|+. ..||.+|-+.|..|++.|- -+|--||.. .+. ||....++||+...+
T Consensus 121 ~eEYe~~l~d----n~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 121 DEEYEAHLND----NSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred hHHHHHhhcc----ccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 4556666654 6799999999999999999 789999987 554 999999999987654
No 54
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=80.55 E-value=4.4 Score=30.16 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 270 ~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
++++..++.++...|-.|.+||..+ |.|...++.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4667788888888899999999999 9999999998876654
No 55
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=79.81 E-value=7.2 Score=44.52 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=40.8
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859 265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT 309 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l 309 (458)
...||+.|-.+..+++..|....-.|++.++++|-.+|-..|+.-
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 457999999999999999999999999999999999998776554
No 56
>smart00595 MADF subfamily of SANT domain.
Probab=77.94 E-value=3.9 Score=33.48 Aligned_cols=26 Identities=35% Similarity=0.733 Sum_probs=22.7
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 287 WAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 287 Ws~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
|..||..| |-|..+|+.||+.+...-
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~y 55 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDRY 55 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 99999999 559999999999986544
No 57
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=77.38 E-value=3.2 Score=44.86 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859 209 SNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH 258 (458)
Q Consensus 209 p~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~ 258 (458)
.......||.||--++-++...|| +++.+|-+.||.|+-..+...|...
T Consensus 183 r~~~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 183 RTEFPDEWTAEDIVLFEQAFQFFG-KDFHKIRQALPHRSLASLVQYYYSW 231 (534)
T ss_pred cCCCcccchHHHHHHHHHHHHHhc-ccHHHHHHHccCccHHHHHHHHHHH
Confidence 455667899999999999999999 8999999999999999998877543
No 58
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=77.27 E-value=1.9 Score=44.52 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC---------cccchhhhccCC----CCchhhhHhhhhhhcc
Q 046859 213 KGQWTTEEDRLLIRLVDQFG---------IRKWSHIAQMLP----GRIGKQCRERWHNHLR 260 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G---------~~nW~~IA~~Lp----gRt~~Qcr~RW~~~L~ 260 (458)
...|+.+|-..|+++..+.- ..-|..||..+. -|++.||+.+|.++.+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 46899999999998886431 134999998553 5999999999988654
No 59
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=76.43 E-value=17 Score=37.81 Aligned_cols=86 Identities=23% Similarity=0.463 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCccc---chhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHH-h-----
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRK---WSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAE-I----- 283 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~n---W~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k-~----- 283 (458)
-..||.-|...|+++.+...... -.+|++.++||+..+|++.-+ .|+. ..+.+++++ |
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~-~LK~------------rvareaiqkv~~~g~~ 87 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQ-QLKG------------RVAREAIQKVHPGGLK 87 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHH-HHHH------------HHHHHHHHHhcccccc
Confidence 45799999999988887663244 457889999999999998543 3432 234445544 2
Q ss_pred CCc------------HHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 284 GNK------------WAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 284 G~k------------Ws~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
|.+ |..+|..+.|.-+..+-.-|..++-
T Consensus 88 ~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 88 GPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred cccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 211 9999999999999999888877654
No 60
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=75.38 E-value=3.7 Score=33.93 Aligned_cols=44 Identities=32% Similarity=0.643 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHh---Ccc---------cchhhhccCC-----CCchhhhHhhhhhh
Q 046859 215 QWTTEEDRLLIRLVDQF---GIR---------KWSHIAQMLP-----GRIGKQCRERWHNH 258 (458)
Q Consensus 215 ~WT~EED~~Ll~lV~~~---G~~---------nW~~IA~~Lp-----gRt~~Qcr~RW~~~ 258 (458)
.||+++++.|++++.+. |.. -|..|+..|. ..+..||++||..+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 49999999999888543 211 2888888773 34668999998764
No 61
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=74.20 E-value=7.8 Score=28.33 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHH
Q 046859 271 EEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNAT 309 (458)
Q Consensus 271 EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l 309 (458)
+=|.+|+.+..+-|. .|.+||+.+ |=|...|..|++.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 347788888888884 499999999 99999999999865
No 62
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=69.82 E-value=4.5 Score=46.12 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhh
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHN 257 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~ 257 (458)
...||+.|-.+..+++-.|. +++-.|+++++++|..||-+.|+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence 35799999999999999999 899999999999999999998764
No 63
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=69.81 E-value=4 Score=34.22 Aligned_cols=24 Identities=38% Similarity=0.819 Sum_probs=13.8
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 046859 209 SNVVKGQWTTEEDRLLI--------RLVDQFG 232 (458)
Q Consensus 209 p~lkkG~WT~EED~~Ll--------~lV~~~G 232 (458)
|.-..|-||+|+|+.|. +|++++|
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 66778999999999983 5556666
No 64
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=65.78 E-value=19 Score=37.54 Aligned_cols=50 Identities=34% Similarity=0.537 Sum_probs=41.2
Q ss_pred cCCCChHHHHHHHHHHHHh-CC---cHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859 265 KDIWSEEEDKALIEAHAEI-GN---KWAEIAKRLPGRTENSIKNHWNATKRRQF 314 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~-G~---kWs~IAk~lpgRT~~qcKnRw~~l~rr~~ 314 (458)
-..||.-|...|+++.+.. |. .-++|+++++||+..+|++.-..++.|..
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rva 74 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVA 74 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHH
Confidence 4579999999999988765 43 36789999999999999998888776654
No 65
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=65.13 E-value=12 Score=34.03 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 270 EEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 270 ~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
.+-|.+|+.+.++-| ..|++||+.+ |-|...|+.|++.+.....-+
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 356888999988888 4599999999 999999999999998876433
No 66
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=60.80 E-value=8.8 Score=28.07 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhh
Q 046859 219 EEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHN 257 (458)
Q Consensus 219 EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~ 257 (458)
+=|..|+.+....|...|.+||+.+ |=+...|..|+..
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHH
Confidence 4478899999999988899999999 8999999999875
No 67
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=58.52 E-value=19 Score=35.23 Aligned_cols=45 Identities=27% Similarity=0.323 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhC---CCCCHHHHHHHHHHHhHh
Q 046859 267 IWSEEEDKALIEAHAEIGNKWAEIAKRL---PGRTENSIKNHWNATKRR 312 (458)
Q Consensus 267 ~WT~EED~~Llelv~k~G~kWs~IAk~l---pgRT~~qcKnRw~~l~rr 312 (458)
.|++++|..|+.+| +.|+.-..|++.+ ..-|-..+..||..++--
T Consensus 1 rW~~~DDl~Li~av-~~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd 48 (199)
T PF13325_consen 1 RWKPEDDLLLINAV-EQTNDLESVHLGVKFSCKFTLQEIEERWYALLYD 48 (199)
T ss_pred CCCchhhHHHHHHH-HHhcCHHHHHccCCcCCcCcHHHHHHHHHHHHcC
Confidence 49999999999999 5677777776653 446889999999998753
No 68
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=58.10 E-value=26 Score=25.73 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.++--.|-.+.+||..+ |-|...++.+....+++
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHH
Confidence 445556666555567799999999 99999999988877665
No 69
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=57.66 E-value=16 Score=33.67 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 270 EEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 270 ~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
.+-|.+|+.+.++-| -.|++||+.+ |-|...|+.|++.+.+...-+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 456888888888887 4599999999 999999999999998877543
No 70
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=56.37 E-value=5.9 Score=33.19 Aligned_cols=17 Identities=41% Similarity=0.782 Sum_probs=9.7
Q ss_pred cccccCCCChHHHHHHH
Q 046859 261 PDIKKDIWSEEEDKALI 277 (458)
Q Consensus 261 p~ikk~~WT~EED~~Ll 277 (458)
|..-.|-||+|+|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 44557889999999983
No 71
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=56.09 E-value=44 Score=28.81 Aligned_cols=51 Identities=16% Similarity=0.365 Sum_probs=36.5
Q ss_pred CCCChHHHHHHHHHHHHh----CC----cHHH----HHhhC-CCCCHHHHHHHHHHHhHhhhhh
Q 046859 266 DIWSEEEDKALIEAHAEI----GN----KWAE----IAKRL-PGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~----G~----kWs~----IAk~l-pgRT~~qcKnRw~~l~rr~~sk 316 (458)
..||+|++..|++.+..| |. .|.. |...+ ..=|..|+..+-+.+.+|....
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~ 68 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNA 68 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999877 52 3544 44444 2348889999888887776543
No 72
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=55.59 E-value=12 Score=34.21 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccc
Q 046859 218 TEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIK 264 (458)
Q Consensus 218 ~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ik 264 (458)
.+-|.+|+.+.++.|...|++||+.+ |-+...|+.|+.++....+-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 35788999999999988999999999 99999999999998766543
No 73
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=55.39 E-value=17 Score=40.82 Aligned_cols=51 Identities=18% Similarity=0.527 Sum_probs=42.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHH----------HhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859 265 KDIWSEEEDKALIEAHAEIGNKWAEI----------AKRLPGRTENSIKNHWNATKRRQFS 315 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~kWs~I----------Ak~lpgRT~~qcKnRw~~l~rr~~s 315 (458)
|..||..|.+-...+++++|....+| -....-+|..|++.+|+.++++-.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k 148 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK 148 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999888 2224457889999999988887643
No 74
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=52.07 E-value=34 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+.-..|-.+.+||+.+ |.|...+++++...+++
T Consensus 116 ~~~r~il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 156 (161)
T TIGR02985 116 EQCRKIFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKE 156 (161)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 455666667666788999999999 99999999999886554
No 75
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=48.93 E-value=13 Score=34.41 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859 218 TEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 218 ~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i 263 (458)
.+-|.+|+.+.++.|...|++||+.+ |-+...|+.|++++.+..+
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 46688999999999988899999999 9999999999999877664
No 76
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=47.23 E-value=16 Score=27.09 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859 218 TEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL 259 (458)
Q Consensus 218 ~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L 259 (458)
++++..++.++-..| ..|.+||+.+ |.+...++.+..+.+
T Consensus 12 ~~~~r~i~~l~~~~g-~s~~eIa~~l-~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 12 PERQREIFLLRYFQG-MSYAEIAEIL-GISESTVKRRLRRAR 51 (54)
T ss_dssp -HHHHHHHHHHHTS----HHHHHHHC-TS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 466777777777778 7899999999 899999998876543
No 77
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=45.97 E-value=26 Score=32.91 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHH
Q 046859 267 IWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWN 307 (458)
Q Consensus 267 ~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~ 307 (458)
.||+|+.++|.+|. .-|-.=++||..|.|.|.+.|.-+-+
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~h 41 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAH 41 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhh
Confidence 59999999999997 66888999999997799999876644
No 78
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=43.14 E-value=30 Score=27.33 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=22.6
Q ss_pred cHHHHHhhCCC-CCHHHHHHHHHHHhHhh
Q 046859 286 KWAEIAKRLPG-RTENSIKNHWNATKRRQ 313 (458)
Q Consensus 286 kWs~IAk~lpg-RT~~qcKnRw~~l~rr~ 313 (458)
-|..||..|.. -+...|+.||+.+...-
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y 56 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDRY 56 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 39999999953 67889999999976543
No 79
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=41.26 E-value=61 Score=26.71 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=26.2
Q ss_pred HHHHHHHHhCC--------cHHHHHhhCCC---CC--HHHHHHHHHHHhH
Q 046859 275 ALIEAHAEIGN--------KWAEIAKRLPG---RT--ENSIKNHWNATKR 311 (458)
Q Consensus 275 ~Llelv~k~G~--------kWs~IAk~lpg---RT--~~qcKnRw~~l~r 311 (458)
.|..+|.+.|+ +|..||..|.- -+ ..+++..|...+.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 47778888873 59999999822 12 3568888877654
No 80
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=41.12 E-value=47 Score=37.52 Aligned_cols=47 Identities=19% Similarity=0.449 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccchhhhcc----------CCCCchhhhHhhhhhhcc
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQM----------LPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~----------LpgRt~~Qcr~RW~~~L~ 260 (458)
|..||-.|.+-...+++++| +++.+|-.. ..-++-.|+|.+|++.++
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 77999999999999999999 888888222 223566789999887765
No 81
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=40.63 E-value=29 Score=38.93 Aligned_cols=47 Identities=21% Similarity=0.488 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhh
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHN 257 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~ 257 (458)
....++||.+|-++......+.| .+.+.|+...|+|..+|+|.++..
T Consensus 406 ~~~~~~w~~se~e~fyka~~~~g-s~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 406 KLETDKWDASETELFYKALSERG-SDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccccCcccchhhHHhhhHHhhhc-ccccccccccccccHHHHHHHHhh
Confidence 45668999999999999999999 789999999999999999998854
No 82
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=39.51 E-value=64 Score=27.22 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
.++.| ..++.++-..|..+.+||+.+ |-|...++++....+++
T Consensus 111 L~~~~-~~ii~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 111 LPERE-REVLVLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred CCHHH-HHHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33333 344455545688999999999 78999999998886554
No 83
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=39.50 E-value=1.2e+02 Score=28.33 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+....|-...+||..+ |-|...+++|+...+++
T Consensus 137 ~~~r~i~~l~~~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~ 177 (192)
T PRK09643 137 VEQRAALVAVDMQGYSVADAARML-GVAEGTVKSRCARGRAR 177 (192)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 556677777777888999999999 99999999998665443
No 84
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=38.98 E-value=88 Score=27.47 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
++..||+|+-..++..+...| ..=..||..+ |=+...++. |.+.+.
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e~-gIs~~tl~~-W~r~y~ 54 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPG-MTVSLVARQH-GVAASQLFL-WRKQYQ 54 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHH-CcCHHHHHH-HHHHHh
Confidence 356799999988887777777 5567888777 335555544 766553
No 85
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=38.86 E-value=93 Score=21.48 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
++++ +..++.++..-|-.+..||..+ |-+...|+.+.....+
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRALK 52 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4444 4555556556778899999999 8888888777665433
No 86
>smart00595 MADF subfamily of SANT domain.
Probab=38.15 E-value=15 Score=29.93 Aligned_cols=23 Identities=39% Similarity=0.920 Sum_probs=19.8
Q ss_pred cchhhhccCCCCchhhhHhhhhhh
Q 046859 235 KWSHIAQMLPGRIGKQCRERWHNH 258 (458)
Q Consensus 235 nW~~IA~~LpgRt~~Qcr~RW~~~ 258 (458)
-|..||..| |-+..+|+.+|.++
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHH
Confidence 399999999 55999999999875
No 87
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=38.01 E-value=31 Score=41.36 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=37.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC------------CCCchhhhHhhhhhhcc
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML------------PGRIGKQCRERWHNHLR 260 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L------------pgRt~~Qcr~RW~~~L~ 260 (458)
..++..||.|||+.|+-.+.+||-.+|.+|-..+ ..||+..+..|-..++.
T Consensus 923 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 923 QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 3344569999999999999999988999985433 25777777666655443
No 88
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=37.69 E-value=1.6e+02 Score=31.54 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHH
Q 046859 266 DIWSEEEDKALIEAHAEIGNKWAEIAK-RLPGRTENSIKNHWNA 308 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G~kWs~IAk-~lpgRT~~qcKnRw~~ 308 (458)
..|+++|-...-+.++.||.....|.. .++.|+-..|-..|..
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHH
Confidence 469999999999999999999999965 6899999999887754
No 89
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=37.38 E-value=51 Score=27.70 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHH
Q 046859 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSI 302 (458)
Q Consensus 273 D~~Llelv~k~G~kWs~IAk~lpgRT~~qc 302 (458)
|+.|..+....|..|..+|.+| |=|..+|
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I 30 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDI 30 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 5678889999999999999999 6666554
No 90
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=35.64 E-value=86 Score=26.27 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 271 EEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 271 EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
+.|.+|+.+..+.| ..++.||+.+ |-+...|+.|.+.+.....-+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56788888888877 4699999999 999999999999998876533
No 91
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=34.81 E-value=90 Score=26.01 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCC--------cHHHHHhhCCCC-----CHHHHHHHHHHHhHh
Q 046859 274 KALIEAHAEIGN--------KWAEIAKRLPGR-----TENSIKNHWNATKRR 312 (458)
Q Consensus 274 ~~Llelv~k~G~--------kWs~IAk~lpgR-----T~~qcKnRw~~l~rr 312 (458)
-+|..+|.+.|+ +|..||..|.-. ...++|..|...+..
T Consensus 35 ~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 35 YRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 347777777774 599999998332 356788888777654
No 92
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=33.71 E-value=39 Score=37.97 Aligned_cols=50 Identities=24% Similarity=0.490 Sum_probs=44.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
..+.||.+|-++...+..+.|..-+.|+..+|+|+..+||.+|..--+|.
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~ 457 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRN 457 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhcc
Confidence 45689999999999999999999999999999999999999987644443
No 93
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=32.10 E-value=95 Score=28.99 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 270 ~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
.++...++.+..-.|-.+.+||..| |-|...++.||..+...
T Consensus 137 ~~~~~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~~ 178 (185)
T PF07638_consen 137 DPRQRRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARAW 178 (185)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444555566555678899999999 99999999999887543
No 94
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=31.38 E-value=78 Score=26.59 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 046859 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKN 304 (458)
Q Consensus 273 D~~Llelv~k~G~kWs~IAk~lpgRT~~qcKn 304 (458)
|..|..+....|..|..+|..| |=+...|..
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~~ 34 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEINQ 34 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHHH
Confidence 5678888899999999999999 666655443
No 95
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=31.12 E-value=1.1e+02 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHH
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw 306 (458)
-|...|.++...++++.++.|+.| |=+...+..|-
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~kl 39 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL-GISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHH
Confidence 367889999999999999999999 76776665553
No 96
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=30.57 E-value=39 Score=31.72 Aligned_cols=41 Identities=29% Similarity=0.339 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhh
Q 046859 215 QWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHN 257 (458)
Q Consensus 215 ~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~ 257 (458)
.||+|+.+.|.+|..+ | ..=++||..|.+.|.+.+.-+-++
T Consensus 2 ~Wtde~~~~L~~lw~~-G-~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-G-LSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHHc-C-CCHHHHHHHhCCcchhhhhhhhhc
Confidence 5999999999999864 4 357899999976888777665544
No 97
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=30.37 E-value=64 Score=26.59 Aligned_cols=29 Identities=31% Similarity=0.665 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHH
Q 046859 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSI 302 (458)
Q Consensus 273 D~~Llelv~k~G~kWs~IAk~lpgRT~~qc 302 (458)
|..|..+....|..|.++|++| |=+..+|
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI 32 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDI 32 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 4567788889999999999999 6665554
No 98
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=29.92 E-value=1.1e+02 Score=27.23 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
.++++ ..++.+....|-.+.+||..| |.|...++.+....+++
T Consensus 129 L~~~~-r~vl~l~~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 171 (182)
T PRK09652 129 LPEEL-RTAITLREIEGLSYEEIAEIM-GCPIGTVRSRIFRAREA 171 (182)
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34444 444555556788999999999 99999999988765444
No 99
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=29.87 E-value=1.1e+02 Score=27.24 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 275 ALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 275 ~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
.++.+....|-.+..||..| |-|...|++++...+++
T Consensus 132 ~i~~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 168 (179)
T PRK11924 132 EVFLLRYVEGLSYREIAEIL-GVPVGTVKSRLRRARQL 168 (179)
T ss_pred HHhhHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555688899999999 99999999998776554
No 100
>PRK04217 hypothetical protein; Provisional
Probab=29.64 E-value=1.3e+02 Score=26.73 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
..-|++| ..++.++...|-...+||+.+ |.|...++.++....++
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkk 85 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKK 85 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3456666 577777777888999999999 99999999999876554
No 101
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=27.96 E-value=1.1e+02 Score=27.09 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHhHhhhhhhc
Q 046859 270 EEEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNATKRRQFSKRK 318 (458)
Q Consensus 270 ~EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk~k 318 (458)
.+-|.+|+++.++-+. .++.||+.+ |-|...|.+|-+.+.+...-++-
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCceeeE
Confidence 3557788888877774 599999999 99999999999999888765543
No 102
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.16 E-value=98 Score=25.82 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=21.4
Q ss_pred HHHHHHHhCCcHHHHHhhCCCCCHHHHH
Q 046859 276 LIEAHAEIGNKWAEIAKRLPGRTENSIK 303 (458)
Q Consensus 276 Llelv~k~G~kWs~IAk~lpgRT~~qcK 303 (458)
|..+....|..|.++|++| |=+..+|.
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI~ 36 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEIR 36 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 4446678899999999999 87877763
No 103
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=24.98 E-value=1.5e+02 Score=26.90 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+..-.|..+.+||..| |-|...++++....+++
T Consensus 139 ~~~r~il~l~~~~~~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T PRK09641 139 EKYRTVIVLKYIEDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred HHHHHHhhhHHhhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555566656788899999999 99999999997765544
No 104
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=23.72 E-value=88 Score=26.22 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859 219 EEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 219 EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i 263 (458)
+.|..|+.+..+.+...++.||+.+ |-+...|+.|...+....+
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~ 46 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGV 46 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 5678888888888877899999999 8999999999988766543
No 105
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=23.72 E-value=1.9e+02 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
++...++.++...|-...+||..| |-|...+++|....+++
T Consensus 109 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 149 (161)
T PRK09047 109 ARQREAFLLRYWEDMDVAETAAAM-GCSEGSVKTHCSRATHA 149 (161)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445667777777888999999999 99999999998766554
No 106
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=23.71 E-value=1.5e+02 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=37.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCC----CCCHHHHHHHHHHH
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLP----GRTENSIKNHWNAT 309 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lp----gRT~~qcKnRw~~l 309 (458)
....-|..|..-|..||.+||..+...|.-.- -.|..||+.+....
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 34567889999999999999999999997642 38999999887654
No 107
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=23.34 E-value=1.8e+02 Score=26.99 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
+.+..++.+....|-...+||..| |-|...++.|....+++-
T Consensus 134 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~L 175 (188)
T TIGR02943 134 EQTARVFMMREVLGFESDEICQEL-EISTSNCHVLLYRARLSL 175 (188)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 345667777777889999999999 999999999987765543
No 108
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=23.28 E-value=1.7e+02 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+....|-...+||..| |-|...+++|+...+++
T Consensus 122 ~~~r~i~~l~~~~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~ 162 (169)
T TIGR02954 122 DKYQTAIILRYYHDLTIKEIAEVM-NKPEGTVKTYLHRALKK 162 (169)
T ss_pred HHHhHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445566666666788899999999 88999999998776554
No 109
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=23.18 E-value=1.7e+02 Score=27.04 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+..-.|-.+.+||..| |-|...+++|....+++
T Consensus 109 ~~~r~i~~l~~~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (181)
T PRK09637 109 EKYAEALRLTELEGLSQKEIAEKL-GLSLSGAKSRVQRGRVK 149 (181)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 356667777777889999999999 99999999998766544
No 110
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=23.06 E-value=1.2e+02 Score=25.32 Aligned_cols=31 Identities=29% Similarity=0.534 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 046859 273 DKALIEAHAEIGNKWAEIAKRLPGRTENSIKN 304 (458)
Q Consensus 273 D~~Llelv~k~G~kWs~IAk~lpgRT~~qcKn 304 (458)
|..|-......|..|..+|+.| |=|...|.+
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 4567777888999999999999 777776654
No 111
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=22.51 E-value=77 Score=28.11 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859 219 EEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 219 EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i 263 (458)
+-|.+|+++.++.+...+..||+.+ |-+...|+.|-.++.+..+
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~Gi 51 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGV 51 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCc
Confidence 5678899999999978899999999 8999999999988876654
No 112
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=22.39 E-value=2e+02 Score=26.04 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
+++..++.+....|-...+||..+ |.+...|+.|...-+++-
T Consensus 122 ~~~r~v~~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~ 163 (172)
T PRK12523 122 SKARAAFLYNRLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQC 163 (172)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 355667777777788999999999 999999999987665543
No 113
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.18 E-value=2.5e+02 Score=23.99 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=35.7
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCC-CHHHHHHHHHHHhH
Q 046859 265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGR-TENSIKNHWNATKR 311 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgR-T~~qcKnRw~~l~r 311 (458)
+..||+|.-..+++++..-|..=+.||+.+ |. ..++++. |....+
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~-gv~~~~~l~~-W~~~~~ 50 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREF-GIVSATQLYK-WRIQLQ 50 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHh-CCCChHHHHH-HHHHHH
Confidence 568999999999999999999899999999 75 6655554 444333
No 114
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=22.12 E-value=1.4e+02 Score=27.03 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
++...++.+....|-...+||..+ |-|...|++|....+++
T Consensus 141 ~~~r~v~~l~~~~~~s~~EIA~~l-gis~~tv~~~l~rar~~ 181 (190)
T TIGR02939 141 EDLRTAITLRELEGLSYEDIARIM-DCPVGTVRSRIFRAREA 181 (190)
T ss_pred HHHhhhhhhhhhcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444555555555678899999999 89999999998776554
No 115
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=21.79 E-value=2.1e+02 Score=25.35 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
++...++.+....|-.-.+||..| |-+...|++|....+++
T Consensus 109 ~~~r~v~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (160)
T PRK09642 109 ENYRDVVLAHYLEEKSYQEIALQE-KIEVKTVEMKLYRARKW 149 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 455667777778889999999999 99999999997765443
No 116
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=21.53 E-value=2e+02 Score=22.10 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHH
Q 046859 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHW 306 (458)
Q Consensus 272 ED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw 306 (458)
.++..+.+..+.|-.-.+||+.+ ||+.+.|++.-
T Consensus 8 ~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl 41 (50)
T PF11427_consen 8 AEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYL 41 (50)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHH
T ss_pred HHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHh
Confidence 44556677778999999999999 99998887753
No 117
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=21.17 E-value=1.8e+02 Score=26.34 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+..-.|-...+||..| |.|...++++....+++
T Consensus 139 ~~~r~v~~l~~~~g~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T TIGR02948 139 PKYRMVIVLKYMEDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred HHHhHHhhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555555555678899999999 99999999998766554
No 118
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=21.07 E-value=1.2e+02 Score=25.40 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 046859 275 ALIEAHAEIGNKWAEIAKRLPGRTENSIKN 304 (458)
Q Consensus 275 ~Llelv~k~G~kWs~IAk~lpgRT~~qcKn 304 (458)
.|-.+....|..|..+|+.| |=|+.+|..
T Consensus 4 ~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 4 HLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 35555677899999999999 888887765
No 119
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=20.98 E-value=2.1e+02 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 274 KALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 274 ~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
..++.++...|-...+||..| |-+...++.|....+++
T Consensus 145 r~i~~l~~~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 182 (189)
T PRK09648 145 REILILRVVVGLSAEETAEAV-GSTPGAVRVAQHRALAR 182 (189)
T ss_pred HHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 444445445577899999999 99999999987665544
No 120
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=20.94 E-value=2.1e+02 Score=26.50 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 272 ED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+...++.+..-.|-...+||..| |-|...|+.|....+++
T Consensus 145 ~~r~v~~l~~~eg~s~~EIA~~l-gis~~tVk~rl~ra~~~ 184 (194)
T PRK12531 145 AQRDVLQAVYLEELPHQQVAEMF-DIPLGTVKSRLRLAVEK 184 (194)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHHHHHHH
Confidence 34445555555678899999999 99999999997665554
No 121
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=20.85 E-value=1.3e+02 Score=25.35 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCcHHHHHhhCCCCCH---HHHHHHHH
Q 046859 273 DKALIEAHAEIGNKWAEIAKRLPGRTE---NSIKNHWN 307 (458)
Q Consensus 273 D~~Llelv~k~G~kWs~IAk~lpgRT~---~qcKnRw~ 307 (458)
|.+|-......|..|.++|.+| |=+. ..|+..+.
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L-~vs~~dI~~I~~e~p 40 (84)
T cd08805 4 EMKMAVIREHLGLSWAELAREL-QFSVEDINRIRVENP 40 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHc-CCCHHHHHHHHHhCC
Confidence 4567788889999999999998 4444 44555443
No 122
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=20.78 E-value=2.2e+02 Score=25.97 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+....|-...+||..| |-|...++.|....+++
T Consensus 134 ~~~r~v~~l~~~~g~s~~eIA~~l-~is~~tV~~~l~ra~~~ 174 (184)
T PRK12512 134 PRQRDVVQSISVEGASIKETAAKL-SMSEGAVRVALHRGLAA 174 (184)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 345666666666788999999999 99999999998776554
No 123
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=20.62 E-value=2.2e+02 Score=26.00 Aligned_cols=42 Identities=17% Similarity=0.019 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
++...++.++...|-...+||..| |-+...+|.|....+++-
T Consensus 130 ~~~R~v~~L~~~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~ 171 (178)
T PRK12529 130 PRVKQAFLMATLDGMKQKDIAQAL-DIALPTVKKYIHQAYVTC 171 (178)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 444566677767788999999999 999999999988666553
No 124
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=20.58 E-value=1.1e+02 Score=22.32 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=18.2
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 046859 266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKN 304 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKn 304 (458)
..+|.+|-..|..++ +-|-.=.+||+.| ||+...|.+
T Consensus 3 ~~Lt~~eR~~I~~l~-~~G~s~~~IA~~l-g~s~sTV~r 39 (44)
T PF13936_consen 3 KHLTPEERNQIEALL-EQGMSIREIAKRL-GRSRSTVSR 39 (44)
T ss_dssp ---------HHHHHH-CS---HHHHHHHT-T--HHHHHH
T ss_pred cchhhhHHHHHHHHH-HcCCCHHHHHHHH-CcCcHHHHH
Confidence 356777777776664 5777789999999 999987764
No 125
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=20.40 E-value=1.3e+02 Score=24.22 Aligned_cols=29 Identities=31% Similarity=0.625 Sum_probs=21.1
Q ss_pred HHHHHHHHHH-hCCcHHHHHhhCCCCCHHHH
Q 046859 273 DKALIEAHAE-IGNKWAEIAKRLPGRTENSI 302 (458)
Q Consensus 273 D~~Llelv~k-~G~kWs~IAk~lpgRT~~qc 302 (458)
++.|..++.. .|..|..+|+.| |=+..+|
T Consensus 5 ~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i 34 (88)
T smart00005 5 REKLAKLLDHPLGLDWRELARKL-GLSEADI 34 (88)
T ss_pred HHHHHHHHcCccchHHHHHHHHc-CCCHHHH
Confidence 4556666666 899999999999 4455444
No 126
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=20.18 E-value=2e+02 Score=26.43 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 272 ED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
++..++.+..-.|-...+||..| |-|...|++|+...+++
T Consensus 142 ~~r~v~~l~~~~g~s~~eIA~~l-gis~~tv~~~l~Rar~~ 181 (193)
T PRK11923 142 DLRTALTLREFDGLSYEDIASVM-QCPVGTVRSRIFRAREA 181 (193)
T ss_pred HHhHHHhhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555555677899999999 89999999998776554
No 127
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=20.15 E-value=2.3e+02 Score=25.46 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++..++.+..-.|-.-.+||..| |.+...|+.|....+++
T Consensus 121 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 161 (173)
T PRK09645 121 PEHRAVLVRSYYRGWSTAQIAADL-GIPEGTVKSRLHYALRA 161 (173)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445566777667788899999999 99999999998766544
Done!