Query 046859
Match_columns 458
No_of_seqs 307 out of 2066
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-39 7.3E-44 295.3 12.4 154 153-313 5-158 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 8.1E-38 2.8E-42 275.7 11.6 126 188-313 2-127 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 4.7E-32 1.6E-36 230.9 12.2 104 210-313 1-104 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 8.6E-32 2.9E-36 230.8 11.9 104 213-316 1-104 (107)
5 3osg_A MYB21; transcription-DN 100.0 6.9E-31 2.3E-35 231.4 12.8 106 207-313 5-110 (126)
6 3zqc_A MYB3; transcription-DNA 100.0 6.1E-31 2.1E-35 233.0 12.0 105 212-316 1-105 (131)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.2E-28 4.1E-33 224.4 7.9 126 210-337 3-129 (159)
8 3zqc_A MYB3; transcription-DNA 99.9 2.5E-24 8.7E-29 190.5 8.8 128 155-294 3-130 (131)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 4.5E-23 1.5E-27 175.4 8.9 101 154-262 4-104 (105)
10 2k9n_A MYB24; R2R3 domain, DNA 99.9 3.9E-23 1.3E-27 176.9 6.0 101 155-263 2-102 (107)
11 3osg_A MYB21; transcription-DN 99.9 1.1E-22 3.7E-27 179.1 7.7 100 153-261 10-109 (126)
12 1h8a_C AMV V-MYB, MYB transfor 99.9 5.6E-22 1.9E-26 174.5 8.9 102 153-262 26-127 (128)
13 2dim_A Cell division cycle 5-l 99.8 1.4E-20 4.7E-25 149.8 5.1 66 208-273 4-69 (70)
14 1ign_A Protein (RAP1); RAP1,ye 99.8 1E-18 3.5E-23 168.4 10.9 105 209-313 4-200 (246)
15 2juh_A Telomere binding protei 99.7 1.9E-17 6.4E-22 145.5 5.2 84 206-289 10-103 (121)
16 2llk_A Cyclin-D-binding MYB-li 99.7 4.7E-17 1.6E-21 131.4 5.3 61 250-311 8-68 (73)
17 2d9a_A B-MYB, MYB-related prot 99.7 1E-16 3.5E-21 123.7 5.9 57 208-264 3-59 (60)
18 1gvd_A MYB proto-oncogene prot 99.6 2.4E-16 8.3E-21 118.3 5.7 52 211-262 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.6 2.9E-16 1E-20 124.5 6.0 64 206-269 3-68 (69)
20 2roh_A RTBP1, telomere binding 99.6 4.9E-16 1.7E-20 136.7 7.4 80 207-286 25-114 (122)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 3.3E-16 1.1E-20 117.4 5.1 52 211-262 1-52 (52)
22 2din_A Cell division cycle 5-l 99.6 2.1E-16 7.1E-21 124.3 3.3 60 206-267 2-61 (66)
23 2llk_A Cyclin-D-binding MYB-li 99.6 4.8E-16 1.7E-20 125.5 5.1 64 198-264 8-71 (73)
24 2din_A Cell division cycle 5-l 99.6 1.4E-15 4.7E-20 119.6 6.6 59 258-317 2-60 (66)
25 2cu7_A KIAA1915 protein; nucle 99.6 3.9E-15 1.3E-19 119.1 6.8 58 259-316 3-60 (72)
26 1x41_A Transcriptional adaptor 99.5 3.3E-15 1.1E-19 115.6 5.0 55 208-262 3-57 (60)
27 2d9a_A B-MYB, MYB-related prot 99.5 4.9E-15 1.7E-19 114.2 6.0 55 260-314 3-58 (60)
28 3sjm_A Telomeric repeat-bindin 99.5 3.1E-15 1E-19 117.7 4.8 55 210-264 8-64 (64)
29 2cu7_A KIAA1915 protein; nucle 99.5 4.9E-15 1.7E-19 118.5 4.3 58 207-265 3-60 (72)
30 1guu_A C-MYB, MYB proto-oncoge 99.5 1.3E-14 4.5E-19 108.7 6.4 50 263-312 1-51 (52)
31 1w0t_A Telomeric repeat bindin 99.5 7.5E-15 2.6E-19 110.7 4.9 49 212-260 1-51 (53)
32 2yum_A ZZZ3 protein, zinc fing 99.5 1E-14 3.5E-19 117.2 4.8 61 208-268 3-68 (75)
33 1w0t_A Telomeric repeat bindin 99.5 2.8E-14 9.5E-19 107.6 6.7 49 264-312 1-52 (53)
34 1gvd_A MYB proto-oncogene prot 99.5 2.9E-14 1E-18 106.9 6.0 50 263-312 1-51 (52)
35 1ity_A TRF1; helix-turn-helix, 99.5 4.1E-14 1.4E-18 112.2 7.0 58 259-316 4-64 (69)
36 2elk_A SPCC24B10.08C protein; 99.5 2.1E-14 7.2E-19 110.5 5.0 52 208-259 4-56 (58)
37 2dim_A Cell division cycle 5-l 99.5 4.4E-14 1.5E-18 112.2 5.9 57 260-316 4-61 (70)
38 1x41_A Transcriptional adaptor 99.5 6.6E-14 2.2E-18 108.3 6.4 52 261-312 4-56 (60)
39 3sjm_A Telomeric repeat-bindin 99.4 1.4E-13 4.7E-18 108.3 7.0 51 263-313 9-62 (64)
40 2yum_A ZZZ3 protein, zinc fing 99.4 1.5E-13 5.1E-18 110.4 6.6 56 260-315 3-64 (75)
41 2elk_A SPCC24B10.08C protein; 99.4 3.8E-13 1.3E-17 103.5 6.6 49 261-309 5-55 (58)
42 2ltp_A Nuclear receptor corepr 99.1 5.4E-14 1.9E-18 117.1 0.0 56 258-313 9-64 (89)
43 2aje_A Telomere repeat-binding 99.3 9.8E-13 3.4E-17 113.0 6.5 78 207-284 7-94 (105)
44 2ckx_A NGTRF1, telomere bindin 99.3 1.9E-12 6.6E-17 106.8 7.7 69 214-282 1-79 (83)
45 2ltp_A Nuclear receptor corepr 99.0 1.7E-13 5.7E-18 114.2 0.0 55 206-261 9-63 (89)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.1E-12 7.1E-17 104.2 5.9 52 261-312 14-69 (73)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.5E-12 8.7E-17 103.7 4.9 53 208-260 13-68 (73)
48 2ckx_A NGTRF1, telomere bindin 99.2 2.2E-11 7.4E-16 100.5 9.3 49 266-314 1-54 (83)
49 2yus_A SWI/SNF-related matrix- 99.2 4.3E-12 1.5E-16 103.7 4.4 50 208-258 13-62 (79)
50 2yus_A SWI/SNF-related matrix- 99.2 6.4E-12 2.2E-16 102.6 5.0 47 263-309 16-62 (79)
51 2aje_A Telomere repeat-binding 99.2 3.3E-11 1.1E-15 103.5 8.6 55 260-314 8-67 (105)
52 1x58_A Hypothetical protein 49 99.2 2.4E-11 8.3E-16 94.9 6.2 51 263-313 6-59 (62)
53 2juh_A Telomere binding protei 99.2 5.6E-11 1.9E-15 104.4 8.7 55 259-313 11-70 (121)
54 1ign_A Protein (RAP1); RAP1,ye 99.1 5.5E-11 1.9E-15 114.8 6.5 106 153-260 7-198 (246)
55 2cjj_A Radialis; plant develop 99.1 1.4E-10 4.7E-15 97.6 7.6 50 264-313 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.1 2.5E-10 8.5E-15 100.4 9.1 54 260-313 26-84 (122)
57 2cjj_A Radialis; plant develop 99.0 1.7E-10 5.9E-15 97.0 4.2 49 211-259 6-57 (93)
58 3hm5_A DNA methyltransferase 1 98.9 3.4E-09 1.2E-13 89.1 7.9 65 249-317 18-87 (93)
59 1x58_A Hypothetical protein 49 98.9 1.3E-09 4.6E-14 85.1 5.0 50 211-261 6-58 (62)
60 2eqr_A N-COR1, N-COR, nuclear 98.9 3.4E-09 1.2E-13 82.1 6.6 48 264-311 11-58 (61)
61 2eqr_A N-COR1, N-COR, nuclear 98.7 9.6E-09 3.3E-13 79.6 5.4 49 210-259 9-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.4E-08 8.1E-13 80.2 6.2 50 262-312 5-58 (72)
63 2iw5_B Protein corest, REST co 98.7 1.4E-08 4.8E-13 97.4 5.6 49 264-312 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.5 4.4E-08 1.5E-12 78.7 3.8 52 209-261 4-58 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.5 1.6E-07 5.3E-12 75.8 5.4 49 265-313 8-60 (73)
66 2xag_B REST corepressor 1; ami 98.4 1.4E-07 4.9E-12 99.3 5.7 47 266-312 381-427 (482)
67 3hm5_A DNA methyltransferase 1 98.4 1.1E-07 3.8E-12 79.9 3.2 60 197-261 18-82 (93)
68 2iw5_B Protein corest, REST co 98.3 2.8E-07 9.4E-12 88.5 4.7 49 211-260 131-179 (235)
69 1fex_A TRF2-interacting telome 98.2 1.1E-06 3.8E-11 67.8 5.4 47 265-311 2-58 (59)
70 1fex_A TRF2-interacting telome 98.2 8.1E-07 2.8E-11 68.6 4.5 48 213-260 2-58 (59)
71 1wgx_A KIAA1903 protein; MYB D 98.2 1.2E-06 4.1E-11 70.6 5.4 50 212-261 7-59 (73)
72 1ofc_X ISWI protein; nuclear p 98.0 2.2E-05 7.6E-10 78.6 9.9 100 214-313 111-276 (304)
73 1ug2_A 2610100B20RIK gene prod 98.0 9.7E-06 3.3E-10 67.6 6.0 49 266-314 34-85 (95)
74 4iej_A DNA methyltransferase 1 97.9 3.3E-05 1.1E-09 64.8 8.0 61 253-317 22-87 (93)
75 2yqk_A Arginine-glutamic acid 97.9 3E-05 1E-09 60.4 7.0 50 260-309 4-54 (63)
76 2lr8_A CAsp8-associated protei 96.9 3.8E-06 1.3E-10 66.6 0.0 46 267-313 16-64 (70)
77 4eef_G F-HB80.4, designed hema 97.7 5.2E-06 1.8E-10 66.8 0.2 43 265-307 20-66 (74)
78 4eef_G F-HB80.4, designed hema 97.7 1.1E-05 3.9E-10 64.8 2.1 44 213-256 20-66 (74)
79 2yqk_A Arginine-glutamic acid 97.7 5.3E-05 1.8E-09 58.9 5.2 50 208-258 4-54 (63)
80 4a69_C Nuclear receptor corepr 97.4 0.00024 8.1E-09 59.6 6.0 48 264-311 42-89 (94)
81 1ug2_A 2610100B20RIK gene prod 97.4 9.1E-05 3.1E-09 61.8 3.2 49 212-260 32-82 (95)
82 2lr8_A CAsp8-associated protei 96.4 3.2E-05 1.1E-09 61.3 0.0 46 214-260 15-62 (70)
83 2crg_A Metastasis associated p 97.3 0.00053 1.8E-08 54.4 6.6 46 264-309 7-53 (70)
84 2xag_B REST corepressor 1; ami 97.2 0.00021 7.2E-09 75.4 4.5 48 212-260 379-426 (482)
85 4b4c_A Chromodomain-helicase-D 97.2 0.0012 3.9E-08 61.8 8.9 101 212-312 6-196 (211)
86 4a69_C Nuclear receptor corepr 97.1 0.00038 1.3E-08 58.3 4.5 44 213-257 43-86 (94)
87 2crg_A Metastasis associated p 97.0 0.00063 2.1E-08 54.0 4.6 45 212-257 7-52 (70)
88 2ebi_A DNA binding protein GT- 96.9 0.00069 2.4E-08 55.2 4.4 49 265-313 4-66 (86)
89 2ebi_A DNA binding protein GT- 96.8 0.00041 1.4E-08 56.5 1.8 49 212-260 3-64 (86)
90 2y9y_A Imitation switch protei 96.6 0.0079 2.7E-07 61.7 10.4 101 214-314 124-293 (374)
91 4iej_A DNA methyltransferase 1 96.4 0.0023 7.8E-08 53.7 3.6 56 201-261 22-82 (93)
92 1irz_A ARR10-B; helix-turn-hel 92.1 0.45 1.5E-05 37.2 6.9 47 263-309 5-56 (64)
93 1ofc_X ISWI protein; nuclear p 90.9 0.34 1.2E-05 48.5 6.4 50 264-313 109-159 (304)
94 4b4c_A Chromodomain-helicase-D 90.0 0.38 1.3E-05 44.6 5.5 50 263-312 5-59 (211)
95 1irz_A ARR10-B; helix-turn-hel 89.7 0.45 1.5E-05 37.2 4.9 49 210-258 4-56 (64)
96 2xb0_X Chromo domain-containin 83.2 0.8 2.7E-05 45.0 3.8 27 266-292 169-196 (270)
97 2xb0_X Chromo domain-containin 71.0 8.3 0.00028 37.8 7.0 49 265-313 3-56 (270)
98 2y9y_A Imitation switch protei 65.7 4.4 0.00015 41.5 4.0 48 212-259 227-289 (374)
99 3cz6_A DNA-binding protein RAP 62.0 19 0.00063 33.0 6.9 57 221-277 64-126 (168)
100 2o8x_A Probable RNA polymerase 53.4 19 0.00066 26.2 4.8 43 268-312 16-58 (70)
101 2li6_A SWI/SNF chromatin-remod 48.7 16 0.00054 31.0 4.0 39 275-313 53-99 (116)
102 1ku3_A Sigma factor SIGA; heli 48.1 26 0.00089 26.3 4.8 41 272-313 14-58 (73)
103 2rq5_A Protein jumonji; develo 45.3 19 0.00065 31.0 4.0 56 223-281 46-113 (121)
104 2lm1_A Lysine-specific demethy 44.3 36 0.0012 28.1 5.5 39 275-313 48-98 (107)
105 2jrz_A Histone demethylase jar 43.2 32 0.0011 29.1 5.1 40 274-313 43-94 (117)
106 3cz6_A DNA-binding protein RAP 42.8 33 0.0011 31.3 5.3 35 198-232 98-141 (168)
107 2p7v_B Sigma-70, RNA polymeras 42.6 27 0.00094 25.8 4.1 41 272-313 9-53 (68)
108 2kk0_A AT-rich interactive dom 42.2 43 0.0015 29.5 5.9 42 275-316 68-122 (145)
109 2eqy_A RBP2 like, jumonji, at 39.7 40 0.0014 28.7 5.2 39 275-313 46-96 (122)
110 2cxy_A BAF250B subunit, HBAF25 38.7 42 0.0014 28.6 5.2 39 275-313 55-105 (125)
111 1kkx_A Transcription regulator 38.1 24 0.00082 30.3 3.5 39 275-313 52-98 (123)
112 1k78_A Paired box protein PAX5 37.3 1.8E+02 0.0062 24.2 9.2 77 214-294 31-118 (149)
113 1u78_A TC3 transposase, transp 37.2 1.7E+02 0.0057 23.8 10.4 87 214-306 5-100 (141)
114 2k27_A Paired box protein PAX- 37.0 1.7E+02 0.0057 24.9 8.9 66 214-283 24-99 (159)
115 2li6_A SWI/SNF chromatin-remod 34.7 18 0.00063 30.5 2.2 39 223-261 53-98 (116)
116 3hug_A RNA polymerase sigma fa 34.4 52 0.0018 25.7 4.8 40 272-312 41-80 (92)
117 3i4p_A Transcriptional regulat 33.7 36 0.0012 29.7 4.0 45 271-316 3-48 (162)
118 2jxj_A Histone demethylase jar 30.6 29 0.001 28.0 2.7 38 275-312 40-89 (96)
119 2rq5_A Protein jumonji; develo 29.1 64 0.0022 27.7 4.7 76 213-313 7-97 (121)
120 1ig6_A MRF-2, modulator recogn 28.8 40 0.0014 27.8 3.3 38 275-312 37-87 (107)
121 1c20_A DEAD ringer protein; DN 28.0 70 0.0024 27.3 4.8 42 274-315 55-109 (128)
122 1x3u_A Transcriptional regulat 27.7 1.1E+02 0.0038 22.6 5.5 43 268-313 17-59 (79)
123 2jrz_A Histone demethylase jar 27.3 36 0.0012 28.8 2.8 39 223-261 44-93 (117)
124 3e7l_A Transcriptional regulat 26.9 96 0.0033 22.8 4.9 35 270-305 18-52 (63)
125 2dbb_A Putative HTH-type trans 26.6 1.1E+02 0.0038 25.8 5.9 45 271-316 9-54 (151)
126 1tty_A Sigma-A, RNA polymerase 26.2 90 0.0031 24.2 4.8 39 273-312 23-65 (87)
127 1or7_A Sigma-24, RNA polymeras 25.8 96 0.0033 26.6 5.4 41 271-312 143-183 (194)
128 3c57_A Two component transcrip 25.3 1.2E+02 0.004 24.0 5.4 44 267-313 27-70 (95)
129 2p1m_A SKP1-like protein 1A; F 24.5 56 0.0019 28.8 3.6 56 217-279 94-154 (160)
130 3ulq_B Transcriptional regulat 24.3 1.5E+02 0.005 23.5 5.8 46 265-313 27-72 (90)
131 1fse_A GERE; helix-turn-helix 24.3 1.4E+02 0.0048 21.6 5.4 45 266-313 10-54 (74)
132 2e1c_A Putative HTH-type trans 24.1 1.2E+02 0.0041 26.7 5.8 46 270-316 26-72 (171)
133 2yqf_A Ankyrin-1; death domain 23.6 1.1E+02 0.0039 25.1 5.2 35 269-304 14-48 (111)
134 1ntc_A Protein (nitrogen regul 23.2 1.1E+02 0.0037 24.2 4.8 35 270-305 50-84 (91)
135 1je8_A Nitrate/nitrite respons 22.9 1.2E+02 0.004 23.3 4.9 44 267-313 21-64 (82)
136 2eqy_A RBP2 like, jumonji, at 22.1 47 0.0016 28.3 2.6 39 223-261 46-95 (122)
137 2k8i_A SLYD, peptidyl-prolyl C 22.0 35 0.0012 30.8 1.8 10 52-61 158-167 (171)
138 1xsv_A Hypothetical UPF0122 pr 21.8 1.4E+02 0.0048 24.6 5.4 41 272-313 29-69 (113)
139 2lm1_A Lysine-specific demethy 21.8 49 0.0017 27.2 2.5 39 223-261 48-97 (107)
140 2jpc_A SSRB; DNA binding prote 21.8 1.5E+02 0.0052 20.7 5.0 38 274-313 4-41 (61)
141 3i4p_A Transcriptional regulat 21.6 40 0.0014 29.4 2.1 44 219-263 3-46 (162)
142 2cxy_A BAF250B subunit, HBAF25 21.5 54 0.0018 27.9 2.8 39 223-261 55-104 (125)
143 2cyy_A Putative HTH-type trans 20.6 1.7E+02 0.0059 24.6 5.9 45 271-316 7-52 (151)
144 1p4w_A RCSB; solution structur 20.3 2.9E+02 0.01 22.2 7.0 46 265-313 32-77 (99)
145 2o71_A Death domain-containing 20.3 1.1E+02 0.0039 25.7 4.6 28 275-303 26-53 (115)
146 1kkx_A Transcription regulator 20.2 25 0.00084 30.3 0.3 39 223-261 52-97 (123)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=2.1e-39 Score=295.31 Aligned_cols=154 Identities=45% Similarity=0.797 Sum_probs=113.2
Q ss_pred CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859 153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG 232 (458)
Q Consensus 153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G 232 (458)
+..+||.|||+.|..+|.. ++. ..|..++...++|++.||+.||.++|+|.+++|+||+|||++|+++|.+||
T Consensus 5 ~k~~Wt~eED~~L~~~v~~----~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g 77 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQ----NGT---DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYG 77 (159)
T ss_dssp ---------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHH----hCC---CCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhC
Confidence 4468999999997666654 332 245666677778999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
..+|..||..|||||+.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+.|||||+++||+||+.++|+
T Consensus 78 ~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 78 PKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp SCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred cccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred h
Q 046859 313 Q 313 (458)
Q Consensus 313 ~ 313 (458)
+
T Consensus 158 ~ 158 (159)
T 1h89_C 158 K 158 (159)
T ss_dssp -
T ss_pred c
Confidence 4
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=8.1e-38 Score=275.74 Aligned_cols=126 Identities=51% Similarity=0.946 Sum_probs=103.3
Q ss_pred ccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCC
Q 046859 188 MDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI 267 (458)
Q Consensus 188 ~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~ 267 (458)
+..+++|++.||+.||.++|+|.+++|+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~ 81 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS 81 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSC
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccccc
Confidence 44567899999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
||+|||++|+++|.+||++|+.||+.|||||+++|++||+.+++++
T Consensus 82 WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998874
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=4.7e-32 Score=230.87 Aligned_cols=104 Identities=62% Similarity=1.201 Sum_probs=99.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHH
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAE 289 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~ 289 (458)
.+++|+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999778999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 290 IAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 290 IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
||+.|||||+++|++||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999998874
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=8.6e-32 Score=230.80 Aligned_cols=104 Identities=40% Similarity=0.736 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHh
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAK 292 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk 292 (458)
||+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999779999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 293 RLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 293 ~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
.|||||+++|++||+.++++..+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999886543
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=6.9e-31 Score=231.41 Aligned_cols=106 Identities=42% Similarity=0.760 Sum_probs=101.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCc
Q 046859 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNK 286 (458)
Q Consensus 207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~k 286 (458)
.++..++|+||+|||++|+++|.+|| .+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHT-TCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 34678999999999999999999999 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 287 WAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 287 Ws~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
|+.||+.|||||+++|++||+.++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998864
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=6.1e-31 Score=233.02 Aligned_cols=105 Identities=44% Similarity=0.880 Sum_probs=101.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHH
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIA 291 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IA 291 (458)
.||+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 37999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 292 KRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 292 k~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
+.|||||+++|++||+.++++.++.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999987643
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.2e-28 Score=224.37 Aligned_cols=126 Identities=33% Similarity=0.632 Sum_probs=78.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCC-cHH
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGN-KWA 288 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~-kWs 288 (458)
.+.+|+||+|||++|+++|.+||..+|..||..||||++.||+.||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 3678999999999999999999988999999999999999999999999999999999999999999999999995 699
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhHhhhhhhcccCCCccchHHHHHHHHcc
Q 046859 289 EIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKYPRASLLQDYIKSLN 337 (458)
Q Consensus 289 ~IAk~lpgRT~~qcKnRw~~l~rr~~sk~k~~~~~p~~~~l~~~iksl~ 337 (458)
.||..|||||+.||++||..++.+.. .+..+..++..+|...++.+|
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~--~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEV--KKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTS--CCSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccc--cccCCChHHHHHHHHHHHHHC
Confidence 99999999999999999999987654 345677777788888888886
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.90 E-value=2.5e-24 Score=190.51 Aligned_cols=128 Identities=24% Similarity=0.315 Sum_probs=98.4
Q ss_pred CCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc
Q 046859 155 MQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR 234 (458)
Q Consensus 155 ~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~ 234 (458)
.|||.|||+.|..+|.. ++. ..|..++..+++|++.||+.||.++|+|.+++|+||+|||++|+++|.++| .
T Consensus 3 g~Wt~eED~~L~~~v~~----~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~ 74 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKE----NGP---QNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-S 74 (131)
T ss_dssp SSCCHHHHHHHHHHHHH----HCS---CCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-S
T ss_pred CCCCHHHHHHHHHHHHH----hCc---CCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC-c
Confidence 47999999997666554 432 245666677778999999999999999999999999999999999999999 8
Q ss_pred cchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhC
Q 046859 235 KWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRL 294 (458)
Q Consensus 235 nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~l 294 (458)
+|+.||..|||||+.||++||+++|++.+..++|+.+- +..-...+.+|+.|++.|
T Consensus 75 ~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 75 KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC------------
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhhhhcchhc
Confidence 99999999999999999999999999999999988763 111122345688888765
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.88 E-value=4.5e-23 Score=175.38 Aligned_cols=101 Identities=24% Similarity=0.394 Sum_probs=87.6
Q ss_pred CCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCc
Q 046859 154 HMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGI 233 (458)
Q Consensus 154 ~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~ 233 (458)
..|||.|||+.|..+|.. ++. ..|..++...++|++.||+.||.++|+|.+++|+||+|||++|+++|.++|
T Consensus 4 k~~WT~eED~~L~~~v~~----~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G- 75 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQK----YGP---KRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG- 75 (105)
T ss_dssp CSCCCHHHHHHHHHHHHH----HCT---TCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-
T ss_pred CCCCCHHHHHHHHHHHHH----hCC---CcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC-
Confidence 468999999997666554 332 235666677788999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859 234 RKWSHIAQMLPGRIGKQCRERWHNHLRPD 262 (458)
Q Consensus 234 ~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ 262 (458)
.+|..||+.|||||+.||++||+.++++.
T Consensus 76 ~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 76 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp SCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 79999999999999999999999998754
No 10
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.87 E-value=3.9e-23 Score=176.94 Aligned_cols=101 Identities=22% Similarity=0.265 Sum_probs=87.7
Q ss_pred CCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcc
Q 046859 155 MQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIR 234 (458)
Q Consensus 155 ~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~ 234 (458)
.+||.|||+.|..+|.. ++. ..|..++..+++|+++||+.||.++|+|.+++|+||+|||.+|+++|.+|| .
T Consensus 2 ~~Wt~eED~~L~~~v~~----~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~ 73 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMR----YGA---KDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG-P 73 (107)
T ss_dssp CSSCHHHHHHHHHHHHH----HCS---SCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC-S
T ss_pred CCCCHHHHHHHHHHHHH----HCC---CCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC-c
Confidence 47999999997666654 432 245556667778999999999999999999999999999999999999999 7
Q ss_pred cchhhhccCCCCchhhhHhhhhhhccccc
Q 046859 235 KWSHIAQMLPGRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 235 nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i 263 (458)
+|..||+.|||||+.||++||..++++..
T Consensus 74 ~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 74 KWNKISKFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp CHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999887543
No 11
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.87 E-value=1.1e-22 Score=179.08 Aligned_cols=100 Identities=24% Similarity=0.392 Sum_probs=88.4
Q ss_pred CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859 153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG 232 (458)
Q Consensus 153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G 232 (458)
...+||.|||+.|..+|.. ++ . .|..++...++|++.|||.||.++|+|.+++|+||+|||++|+++|.+||
T Consensus 10 kk~~WT~eED~~L~~~v~~----~G---~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQ----HG---S-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHH----HT---T-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHH----hC---C-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 5678999999997666654 33 2 45666777778999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCchhhhHhhhhhhccc
Q 046859 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p 261 (458)
.+|..||+.|||||+.||++||..+++.
T Consensus 82 -~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 82 -RQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp -SCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999988753
No 12
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=5.6e-22 Score=174.53 Aligned_cols=102 Identities=23% Similarity=0.364 Sum_probs=88.5
Q ss_pred CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046859 153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFG 232 (458)
Q Consensus 153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G 232 (458)
...|||.|||+.|..+|. .++. ..|..++...++|++.||+.||.++|+|.+++|+||+|||++|++++.++|
T Consensus 26 ~k~~Wt~eED~~L~~~v~----~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQ----KYGP---KRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp CCSCCCHHHHHHHHHHHH----HTCS---CCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHH----HHCC---CCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 456899999999665554 3332 235666677788999999999999999999999999999999999999999
Q ss_pred cccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859 233 IRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262 (458)
Q Consensus 233 ~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ 262 (458)
.+|..||+.|||||+.+|++||+.++++.
T Consensus 99 -~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 99 -NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp -SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred -cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 79999999999999999999999998754
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=149.81 Aligned_cols=66 Identities=38% Similarity=0.718 Sum_probs=64.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHH
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEED 273 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED 273 (458)
.|.+++|+||+|||++|+++|.+||..+|..||..|+|||++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 478899999999999999999999988999999999999999999999999999999999999998
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.77 E-value=1e-18 Score=168.41 Aligned_cols=105 Identities=22% Similarity=0.360 Sum_probs=92.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccc-----chhhhccCCCCchhhhHhhhhhhcccccc-------------------
Q 046859 209 SNVVKGQWTTEEDRLLIRLVDQFGIRK-----WSHIAQMLPGRIGKQCRERWHNHLRPDIK------------------- 264 (458)
Q Consensus 209 p~lkkG~WT~EED~~Ll~lV~~~G~~n-----W~~IA~~LpgRt~~Qcr~RW~~~L~p~ik------------------- 264 (458)
+.+.+++||+|||++|+++|+++|..+ |.+||+.|||||++|||+||+.+|++.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 467889999999999999999998432 99999999999999999999999999996
Q ss_pred ----------cCCCChHHHHHHHHHHHH-h--------------------------------C-----------------
Q 046859 265 ----------KDIWSEEEDKALIEAHAE-I--------------------------------G----------------- 284 (458)
Q Consensus 265 ----------k~~WT~EED~~Llelv~k-~--------------------------------G----------------- 284 (458)
+..||.+||-.|...+.+ + |
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999999887 1 1
Q ss_pred --------CcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 285 --------NKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 285 --------~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
..|..||+.+|+||.+++|+||+..++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 16999999999999999999999998765
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=1.9e-17 Score=145.52 Aligned_cols=84 Identities=13% Similarity=0.314 Sum_probs=78.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhcc----CCCCchhhhHhhhhhhcc-----cccccC-CCChHHHHH
Q 046859 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERWHNHLR-----PDIKKD-IWSEEEDKA 275 (458)
Q Consensus 206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~----LpgRt~~Qcr~RW~~~L~-----p~ikk~-~WT~EED~~ 275 (458)
.+++..++++||+|||+.|+++|++||.++|+.|+.. ++|||+.+|++||+++++ |.++++ +|++||+.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3567889999999999999999999997799999988 489999999999999998 999998 999999999
Q ss_pred HHHHHHHhCCcHHH
Q 046859 276 LIEAHAEIGNKWAE 289 (458)
Q Consensus 276 Llelv~k~G~kWs~ 289 (458)
|+.++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-17 Score=131.36 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=48.3
Q ss_pred hhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 250 QCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 250 Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
.+.-||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.+
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999 9999999999997654
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1e-16 Score=123.68 Aligned_cols=57 Identities=37% Similarity=0.656 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccc
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIK 264 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ik 264 (458)
.|.+++++||+|||++|+++|.+||.++|..||..|+|||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 578999999999999999999999977999999999999999999999999999875
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=2.4e-16 Score=118.27 Aligned_cols=52 Identities=63% Similarity=1.273 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ 262 (458)
+++|+||+|||++|+++|.+||..+|..||..|+|||++||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999668999999999999999999999999984
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=2.9e-16 Score=124.54 Aligned_cols=64 Identities=22% Similarity=0.345 Sum_probs=59.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC--CCchhhhHhhhhhhcccccccCCCC
Q 046859 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLRPDIKKDIWS 269 (458)
Q Consensus 206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp--gRt~~Qcr~RW~~~L~p~ikk~~WT 269 (458)
..++..++++||+|||++|+++|.+||.++|..||..|+ |||+.||++||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 456788999999999999999999999889999999999 9999999999999999999987664
No 20
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.62 E-value=4.9e-16 Score=136.69 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC----CCCchhhhHhhhhhhc-----ccccccCCCChHH-HHHH
Q 046859 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML----PGRIGKQCRERWHNHL-----RPDIKKDIWSEEE-DKAL 276 (458)
Q Consensus 207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L----pgRt~~Qcr~RW~~~L-----~p~ikk~~WT~EE-D~~L 276 (458)
.....++++||+|||+.|+++|++||.++|+.|+..+ ++||+.||++||++++ +|.++++.|+++| +.+|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 3456688999999999999999999988999999863 8999999999999999 7999999999999 8999
Q ss_pred HHHHHHhCCc
Q 046859 277 IEAHAEIGNK 286 (458)
Q Consensus 277 lelv~k~G~k 286 (458)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=3.3e-16 Score=117.40 Aligned_cols=52 Identities=44% Similarity=0.850 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ 262 (458)
+++|+||+|||++|+++|.+||..+|..||..|||||+.||++||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999669999999999999999999999999984
No 22
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-16 Score=124.28 Aligned_cols=60 Identities=28% Similarity=0.514 Sum_probs=56.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCC
Q 046859 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDI 267 (458)
Q Consensus 206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~ 267 (458)
+|+|.+++++||+|||++|+++|+.+| .+|.+||. ++|||++|||+||+++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 789999999999999999999999999 69999999 8899999999999999999887653
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.60 E-value=4.8e-16 Score=125.45 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccc
Q 046859 198 SVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIK 264 (458)
Q Consensus 198 qCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ik 264 (458)
...-||.++|+|.+++|+||+|||++|+++++++| .+|+.||+.| |||++|||+||+. |....+
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 44568999999999999999999999999999999 6799999999 9999999999986 443433
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=119.55 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=55.7
Q ss_pred hcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhhh
Q 046859 258 HLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKR 317 (458)
Q Consensus 258 ~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk~ 317 (458)
+|+|.+++++||+|||++|+++|.+||.+|.+||+ ++|||+.|||+||+.++++..++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 68999999999999999999999999999999999 889999999999999999876554
No 25
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.56 E-value=3.9e-15 Score=119.05 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=54.2
Q ss_pred cccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 259 LRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 259 L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
.+|.+++++||+|||++|+++|.+||++|..||+.|||||+.|||+||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999999999999999999999999999999999999886543
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.3e-15 Score=115.61 Aligned_cols=55 Identities=16% Similarity=0.423 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccc
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPD 262 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ 262 (458)
.+.+.+++||+|||++|+++|++||..+|.+||+.|||||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4788999999999999999999999889999999999999999999999999764
No 27
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=4.9e-15 Score=114.24 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=51.1
Q ss_pred ccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859 260 RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQF 314 (458)
Q Consensus 260 ~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~ 314 (458)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+.++++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 4678999999999999999999999 699999999999999999999999987653
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.54 E-value=3.1e-15 Score=117.67 Aligned_cols=55 Identities=25% Similarity=0.535 Sum_probs=49.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC--CCchhhhHhhhhhhcccccc
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLRPDIK 264 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp--gRt~~Qcr~RW~~~L~p~ik 264 (458)
..+|++||+|||++|+++|.+||..+|..||+.++ |||+.||++||.+++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999889999999876 99999999999999998764
No 29
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.52 E-value=4.9e-15 Score=118.52 Aligned_cols=58 Identities=24% Similarity=0.448 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccccc
Q 046859 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKK 265 (458)
Q Consensus 207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk 265 (458)
..|.+++|+||+|||++|+++|.+|| .+|..||..|||||+.||++||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999 69999999999999999999999999887765
No 30
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.52 E-value=1.3e-14 Score=108.66 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=45.9
Q ss_pred cccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 263 IKKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++++||+|||++|+++|.+||. +|+.||+.|||||+.||++||+.+++.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 999999999999999999999998764
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=7.5e-15 Score=110.70 Aligned_cols=49 Identities=27% Similarity=0.497 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccchhhhccCC--CCchhhhHhhhhhhcc
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP--GRIGKQCRERWHNHLR 260 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp--gRt~~Qcr~RW~~~L~ 260 (458)
++|+||+|||++|+++|.+||.++|..||..++ |||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999999889999999999 9999999999999886
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1e-14 Score=117.25 Aligned_cols=61 Identities=26% Similarity=0.348 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCc-----ccchhhhccCCCCchhhhHhhhhhhcccccccCCC
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGI-----RKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIW 268 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~-----~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~W 268 (458)
+|.+.+++||+|||++|+++|.+||. .+|..||..|+|||+.||++||+++|.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 68899999999999999999999996 78999999999999999999999999988776643
No 33
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.50 E-value=2.8e-14 Score=107.59 Aligned_cols=49 Identities=31% Similarity=0.579 Sum_probs=46.4
Q ss_pred ccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHh
Q 046859 264 KKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP--GRTENSIKNHWNATKRR 312 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp--gRT~~qcKnRw~~l~rr 312 (458)
++++||+|||++|+++|.+|| ++|+.||..++ |||+.||++||..++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999874
No 34
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.49 E-value=2.9e-14 Score=106.86 Aligned_cols=50 Identities=32% Similarity=0.660 Sum_probs=46.5
Q ss_pred cccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 263 IKKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||...++.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 699999999999999999999988753
No 35
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.49 E-value=4.1e-14 Score=112.18 Aligned_cols=58 Identities=26% Similarity=0.471 Sum_probs=53.0
Q ss_pred cccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHhhhhh
Q 046859 259 LRPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP--GRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 259 L~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp--gRT~~qcKnRw~~l~rr~~sk 316 (458)
..+..++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+.+++..+.+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 45667899999999999999999999 79999999999 999999999999999987543
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=2.1e-14 Score=110.50 Aligned_cols=52 Identities=25% Similarity=0.614 Sum_probs=48.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhhc
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNHL 259 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~L 259 (458)
...+.+++||+|||++|+++|++||..+|..||+.|+ +||++||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3457789999999999999999999889999999999 999999999999875
No 37
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.4e-14 Score=112.20 Aligned_cols=57 Identities=26% Similarity=0.458 Sum_probs=52.7
Q ss_pred ccccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 260 RPDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 260 ~p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
.+.+++++||+|||++|+++|.+|| ++|..||..|+|||..||++||..+++..+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4678899999999999999999999 89999999999999999999999999876543
No 38
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=6.6e-14 Score=108.27 Aligned_cols=52 Identities=21% Similarity=0.455 Sum_probs=48.7
Q ss_pred cccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 261 PDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 261 p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+.+.+++||+|||++|+++|.+|| ++|.+||+.|||||+.||++||..++..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 568899999999999999999999 8999999999999999999999987654
No 39
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.44 E-value=1.4e-13 Score=108.25 Aligned_cols=51 Identities=35% Similarity=0.628 Sum_probs=46.5
Q ss_pred cccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC--CCCHHHHHHHHHHHhHhh
Q 046859 263 IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP--GRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp--gRT~~qcKnRw~~l~rr~ 313 (458)
.++++||+|||++|+++|.+|| ++|+.||+.+| |||+.||++||+.+++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4689999999999999999999 68999999976 999999999999998764
No 40
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=110.40 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=51.2
Q ss_pred ccccccCCCChHHHHHHHHHHHHhC------CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhh
Q 046859 260 RPDIKKDIWSEEEDKALIEAHAEIG------NKWAEIAKRLPGRTENSIKNHWNATKRRQFS 315 (458)
Q Consensus 260 ~p~ikk~~WT~EED~~Llelv~k~G------~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~s 315 (458)
+|.+.+++||+|||++|+++|.+|| ++|.+||..|+|||..||++||+.++++..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999 7899999999999999999999888776543
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.40 E-value=3.8e-13 Score=103.46 Aligned_cols=49 Identities=29% Similarity=0.570 Sum_probs=45.6
Q ss_pred cccccCCCChHHHHHHHHHHHHhC-CcHHHHHhhCC-CCCHHHHHHHHHHH
Q 046859 261 PDIKKDIWSEEEDKALIEAHAEIG-NKWAEIAKRLP-GRTENSIKNHWNAT 309 (458)
Q Consensus 261 p~ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~lp-gRT~~qcKnRw~~l 309 (458)
..+.+++||+|||++|+++|.+|| ++|..||+.|+ |||+.||++||..+
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 346688999999999999999999 89999999999 99999999999875
No 42
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.06 E-value=5.4e-14 Score=117.15 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=52.8
Q ss_pred hcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 258 HLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 258 ~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.+.|.+++++||+|||++|+++|.+||++|+.||..|||||+.||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988874
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.34 E-value=9.8e-13 Score=112.98 Aligned_cols=78 Identities=14% Similarity=0.324 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC----CCCchhhhHhhhhhhc-----ccccccCCCChHHHHH-H
Q 046859 207 KKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML----PGRIGKQCRERWHNHL-----RPDIKKDIWSEEEDKA-L 276 (458)
Q Consensus 207 Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L----pgRt~~Qcr~RW~~~L-----~p~ikk~~WT~EED~~-L 276 (458)
..+..++++||+|||+.|+++|++||.++|+.|+..+ ++||+.+|++||++++ +|.++++.-++.|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 3467889999999999999999999977999999865 8999999999999999 6888888887777544 6
Q ss_pred HHHHHHhC
Q 046859 277 IEAHAEIG 284 (458)
Q Consensus 277 lelv~k~G 284 (458)
++++..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=1.9e-12 Score=106.77 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcccchhhhcc----CCCCchhhhHhhhhhhc-----ccccccC-CCChHHHHHHHHHHHH
Q 046859 214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQM----LPGRIGKQCRERWHNHL-----RPDIKKD-IWSEEEDKALIEAHAE 282 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~----LpgRt~~Qcr~RW~~~L-----~p~ikk~-~WT~EED~~Llelv~k 282 (458)
++||+|||+.|+++|++||.++|+.|++. ++|||+.+|++||++++ .|.++++ +..++...+++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999997799999985 89999999999999988 5666654 5777777888888754
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.99 E-value=1.7e-13 Score=114.18 Aligned_cols=55 Identities=27% Similarity=0.447 Sum_probs=51.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccc
Q 046859 206 GKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 206 ~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p 261 (458)
.+.|.+.+|+||+|||++|+++|.+|| .+|..||..|||||+.||++||+++|+.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 456899999999999999999999999 6899999999999999999999999874
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.30 E-value=2.1e-12 Score=104.18 Aligned_cols=52 Identities=15% Similarity=0.353 Sum_probs=48.0
Q ss_pred cccccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 261 PDIKKDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 261 p~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+.+.+++||.|||.+|++++.+|| ++|.+||..|||||..||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 446788999999999999999999 7899999999999999999999998764
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.27 E-value=2.5e-12 Score=103.68 Aligned_cols=53 Identities=21% Similarity=0.513 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---cccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFG---IRKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G---~~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
++...+++||++||.+|++++..|| ..+|.+||.+|||||++||++||..++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999 4689999999999999999999998775
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=2.2e-11 Score=100.51 Aligned_cols=49 Identities=27% Similarity=0.477 Sum_probs=45.5
Q ss_pred CCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHhhh
Q 046859 266 DIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHWNATKRRQF 314 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G~-kWs~IAk~----lpgRT~~qcKnRw~~l~rr~~ 314 (458)
.+||+|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+.+++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999996 899999999999999998654
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.23 E-value=4.3e-12 Score=103.65 Aligned_cols=50 Identities=18% Similarity=0.485 Sum_probs=46.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH 258 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~ 258 (458)
.....+++||+|||++|+++|++|| .+|.+||++|++||+.||+.||.++
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3466789999999999999999999 9999999999999999999999987
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.23 E-value=6.4e-12 Score=102.64 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=44.4
Q ss_pred cccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHH
Q 046859 263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNAT 309 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l 309 (458)
..+++||+|||.+|+++|.+||++|.+||+++++||..||++||..+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999765
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.20 E-value=3.3e-11 Score=103.47 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=49.1
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCC-cHHHHHhhC----CCCCHHHHHHHHHHHhHhhh
Q 046859 260 RPDIKKDIWSEEEDKALIEAHAEIGN-KWAEIAKRL----PGRTENSIKNHWNATKRRQF 314 (458)
Q Consensus 260 ~p~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~l----pgRT~~qcKnRw~~l~rr~~ 314 (458)
.+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+.+++...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34567899999999999999999996 999999975 89999999999999998653
No 52
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=2.4e-11 Score=94.87 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=46.7
Q ss_pred cccCCCChHHHHHHHHHHHHhCCcHHHHHh---hCCCCCHHHHHHHHHHHhHhh
Q 046859 263 IKKDIWSEEEDKALIEAHAEIGNKWAEIAK---RLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G~kWs~IAk---~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.++.+||+|||+.|+++|++||.+|+.|+. .+++||..++|+||+.++|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 367899999999999999999999999994 579999999999999998863
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.17 E-value=5.6e-11 Score=104.42 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=50.2
Q ss_pred cccccccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHhh
Q 046859 259 LRPDIKKDIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 259 L~p~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~----lpgRT~~qcKnRw~~l~rr~ 313 (458)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+.+++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456678999999999999999999996 99999998 49999999999999999854
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.11 E-value=5.5e-11 Score=114.82 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCCCCcccccchhhhhhhhhhhhccCCCcchhhcccccCCCChhHHHHHHHhcCCCCCC--------------------
Q 046859 153 SHMQLDFQEMKPVNFLVSDEVSCVSAGNGYYKKAGMDKNNNRAYHSVRKTMKIGKKSNVV-------------------- 212 (458)
Q Consensus 153 ~~~pwt~EEdk~l~~vv~e~V~~~s~~~~~~~~v~~~~~~~Rt~kqCR~RW~~~Lkp~lk-------------------- 212 (458)
...+||.|||+.+-.++.+...... +...|..++..++|||+.|||.||+.+|++.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~--ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~i 84 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRT--THTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLI 84 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTT--CSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCcc--ccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCce
Confidence 4558999999997666654333211 123467777889999999999999999999996
Q ss_pred ---------CCCCCHHHHHHHHHHHHH-h--------------------------------Cc-----------------
Q 046859 213 ---------KGQWTTEEDRLLIRLVDQ-F--------------------------------GI----------------- 233 (458)
Q Consensus 213 ---------kG~WT~EED~~Ll~lV~~-~--------------------------------G~----------------- 233 (458)
|.+||.+||-.|...+.+ + +.
T Consensus 85 kis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 164 (246)
T 1ign_A 85 KTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQS 164 (246)
T ss_dssp EESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCC
T ss_pred eeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcccc
Confidence 899999999999998876 1 11
Q ss_pred -------ccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 234 -------RKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 234 -------~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
..|..||+.+|+||..+.|+||..+|+
T Consensus 165 ~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 165 RRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLL 198 (246)
T ss_dssp CCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred ccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence 269999999999999999999998876
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.10 E-value=1.4e-10 Score=97.60 Aligned_cols=50 Identities=30% Similarity=0.557 Sum_probs=46.0
Q ss_pred ccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 264 KKDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.+++||.|||.+|++++.+|| ++|.+||..|||||..+|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999998765
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.09 E-value=2.5e-10 Score=100.44 Aligned_cols=54 Identities=20% Similarity=0.408 Sum_probs=48.3
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCC-cHHHHHhh----CCCCCHHHHHHHHHHHhHhh
Q 046859 260 RPDIKKDIWSEEEDKALIEAHAEIGN-KWAEIAKR----LPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 260 ~p~ikk~~WT~EED~~Llelv~k~G~-kWs~IAk~----lpgRT~~qcKnRw~~l~rr~ 313 (458)
....++++||.|||+.|+++|.+||. +|+.|++. |+|||..+||+||+.+++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34457899999999999999999996 99999997 48999999999999999754
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.00 E-value=1.7e-10 Score=97.01 Aligned_cols=49 Identities=14% Similarity=0.465 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---cccchhhhccCCCCchhhhHhhhhhhc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFG---IRKWSHIAQMLPGRIGKQCRERWHNHL 259 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G---~~nW~~IA~~LpgRt~~Qcr~RW~~~L 259 (458)
..+++||+|||.+|++++..|| ..+|.+||..|||||++||++||..++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3468999999999999999997 468999999999999999999999875
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.89 E-value=3.4e-09 Score=89.08 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=59.4
Q ss_pred hhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhC-----CCCCHHHHHHHHHHHhHhhhhhh
Q 046859 249 KQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRL-----PGRTENSIKNHWNATKRRQFSKR 317 (458)
Q Consensus 249 ~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~l-----pgRT~~qcKnRw~~l~rr~~sk~ 317 (458)
.-+.++|.++|.+ ++||.||+..|++|+++||.+|..|+.++ ++||..++|+||..+.++....+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4678899999986 89999999999999999999999999999 58999999999999999876655
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.89 E-value=1.3e-09 Score=85.05 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccchhhh---ccCCCCchhhhHhhhhhhccc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIA---QMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA---~~LpgRt~~Qcr~RW~~~L~p 261 (458)
..+.+||+|||+.|++.|++|| .+|+.|+ ..+++||..++++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G-~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHh-HhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 4678999999999999999999 5999999 577899999999999997764
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.4e-09 Score=82.13 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=44.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
..++||+||+.++++++.+||.+|..||..||+||..+|+.+|...++
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999987654
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=9.6e-09 Score=79.60 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL 259 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L 259 (458)
....++||+||++++++++..|| ++|..||..||+||..||..+|....
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 44568999999999999999999 89999999999999999999997644
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.68 E-value=2.4e-08 Score=80.21 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=45.4
Q ss_pred ccccCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 262 DIKKDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 262 ~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
..+.+.||.||+.+|.+++.+|+ ++|.+||..+ |||..+|++||+.+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34568899999999999999997 6899999998 99999999999998765
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.68 E-value=1.4e-08 Score=97.39 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=45.7
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
....||+||+.++++++.+||++|..||+.+++||..|||++|...+|+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999977665
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.53 E-value=4.4e-08 Score=78.67 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---cccchhhhccCCCCchhhhHhhhhhhccc
Q 046859 209 SNVVKGQWTTEEDRLLIRLVDQFG---IRKWSHIAQMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 209 p~lkkG~WT~EED~~Ll~lV~~~G---~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p 261 (458)
.....+.||+||+.+|.+++..|+ ..+|.+||..+ |||..+|+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 345678999999999999999997 46799999998 99999999999987653
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=1.6e-07 Score=75.75 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=44.6
Q ss_pred cCCCChHHHHHHHHHHHHhC----CcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIG----NKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G----~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
...||.+|+.+|.+++..|+ ++|.+||..+||||..+|+.||..+++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 46899999999999999998 47999999999999999999999986653
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=1.4e-07 Score=99.32 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
..||.||-.++++++.+||..|..||..++.||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999754443
No 67
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.40 E-value=1.1e-07 Score=79.91 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=54.5
Q ss_pred hHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccC-----CCCchhhhHhhhhhhccc
Q 046859 197 HSVRKTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQML-----PGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 197 kqCR~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~L-----pgRt~~Qcr~RW~~~L~p 261 (458)
.-|.++|.++|.+ ++||.||+..|++|+++++ .+|..|+..+ ++||..++++||..+.+.
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 3678999999987 8999999999999999999 8999999998 589999999999887654
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.34 E-value=2.8e-07 Score=88.52 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 211 VVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 211 lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
...++||+||++++++++.+|| ++|..||+.|++||..||+++|+++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999 899999999999999999999998765
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.25 E-value=1.1e-06 Score=67.83 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=42.2
Q ss_pred cCCCChHHHHHHHHHHHHh--------CCc-HHHHHh-hCCCCCHHHHHHHHHHHhH
Q 046859 265 KDIWSEEEDKALIEAHAEI--------GNK-WAEIAK-RLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~--------G~k-Ws~IAk-~lpgRT~~qcKnRw~~l~r 311 (458)
|.+||+|||..|++.|.++ |++ |..+|+ .+|++|-.+||+||...++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 7999999999999987654
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.24 E-value=8.1e-07 Score=68.62 Aligned_cols=48 Identities=21% Similarity=0.413 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--------Ccccchhhhc-cCCCCchhhhHhhhhhhcc
Q 046859 213 KGQWTTEEDRLLIRLVDQF--------GIRKWSHIAQ-MLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~--------G~~nW~~IA~-~LpgRt~~Qcr~RW~~~L~ 260 (458)
|.+||+|||.+|++.|.++ |..-|..+|+ .+|++|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5456999999 8999999999999999875
No 71
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.23 E-value=1.2e-06 Score=70.58 Aligned_cols=50 Identities=18% Similarity=0.355 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---ccchhhhccCCCCchhhhHhhhhhhccc
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~LpgRt~~Qcr~RW~~~L~p 261 (458)
....||.+|+.+|.+++..|+. .+|.+||..+||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999974 4799999999999999999999988654
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.98 E-value=2.2e-05 Score=78.56 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc----------------------------------
Q 046859 214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL---------------------------------- 259 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L---------------------------------- 259 (458)
+.||..+....+.++.+||..+|..||..|+|+|...|+..+.-+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999889999999999999888765432110
Q ss_pred ----------------ccccccCCCChHHHHHHHHHHHHhC----CcHHHHHh------------hCCCCCHHHHHHHHH
Q 046859 260 ----------------RPDIKKDIWSEEEDKALIEAHAEIG----NKWAEIAK------------RLPGRTENSIKNHWN 307 (458)
Q Consensus 260 ----------------~p~ikk~~WT~EED~~Llelv~k~G----~kWs~IAk------------~lpgRT~~qcKnRw~ 307 (458)
.+..+...||++||..|+-++.+|| +.|..|.. .+..||+.+|..|-+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0112346799999999999999999 46999973 346799999999999
Q ss_pred HHhHhh
Q 046859 308 ATKRRQ 313 (458)
Q Consensus 308 ~l~rr~ 313 (458)
.|++-.
T Consensus 271 tLi~~i 276 (304)
T 1ofc_X 271 TLITLI 276 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.97 E-value=9.7e-06 Score=67.58 Aligned_cols=49 Identities=16% Similarity=0.394 Sum_probs=45.2
Q ss_pred CCCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHhHhhh
Q 046859 266 DIWSEEEDKALIEAHAEIGN---KWAEIAKRLPGRTENSIKNHWNATKRRQF 314 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G~---kWs~IAk~lpgRT~~qcKnRw~~l~rr~~ 314 (458)
-.||.|||..|+...++-|. .|+.||+.|.+|+++|+++||+.+++-..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 35999999999999999996 79999999999999999999999988653
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.89 E-value=3.3e-05 Score=64.83 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=52.2
Q ss_pred hhhhhhcccccccCCCChHHHHHHHHHHHHhCCcHHHHHhhCC-----CCCHHHHHHHHHHHhHhhhhhh
Q 046859 253 ERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKRLP-----GRTENSIKNHWNATKRRQFSKR 317 (458)
Q Consensus 253 ~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~lp-----gRT~~qcKnRw~~l~rr~~sk~ 317 (458)
+.|..+|.. ..||.||...|++++++|+-+|..|+.++. +||-.++|.||..+.++....+
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 345556653 689999999999999999999999999973 7999999999999999876554
No 75
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=3e-05 Score=60.36 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=44.9
Q ss_pred ccccccCCCChHHHHHHHHHHHHhCCcHHHHHhh-CCCCCHHHHHHHHHHH
Q 046859 260 RPDIKKDIWSEEEDKALIEAHAEIGNKWAEIAKR-LPGRTENSIKNHWNAT 309 (458)
Q Consensus 260 ~p~ikk~~WT~EED~~Llelv~k~G~kWs~IAk~-lpgRT~~qcKnRw~~l 309 (458)
.|.+....||+||-.+..+++.+||..|..|++. +++||..+|...|..-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 3667788999999999999999999999999995 8999999999888643
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.95 E-value=3.8e-06 Score=66.56 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHhCC---cHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 267 IWSEEEDKALIEAHAEIGN---KWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 267 ~WT~EED~~Llelv~k~G~---kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.||.|||..|+..+++-|. .|+.||+.| +||++|+++||..+++-.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 5999999999999999997 799999999 999999999999998754
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.71 E-value=5.2e-06 Score=66.79 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=38.7
Q ss_pred cCCCChHHHHHHHHHHHHhCC----cHHHHHhhCCCCCHHHHHHHHH
Q 046859 265 KDIWSEEEDKALIEAHAEIGN----KWAEIAKRLPGRTENSIKNHWN 307 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~----kWs~IAk~lpgRT~~qcKnRw~ 307 (458)
...||.+|+.+|.+++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 7999999999999999999885
No 78
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.71 E-value=1.1e-05 Score=64.83 Aligned_cols=44 Identities=16% Similarity=0.389 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCc---ccchhhhccCCCCchhhhHhhhh
Q 046859 213 KGQWTTEEDRLLIRLVDQFGI---RKWSHIAQMLPGRIGKQCRERWH 256 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~LpgRt~~Qcr~RW~ 256 (458)
.+.||.+|+++|.++...|+. .+|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999973 37999999999999999999985
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=5.3e-05 Score=58.94 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=45.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhc-cCCCCchhhhHhhhhhh
Q 046859 208 KSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQ-MLPGRIGKQCRERWHNH 258 (458)
Q Consensus 208 kp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~-~LpgRt~~Qcr~RW~~~ 258 (458)
.|.+....||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 4677888999999999999999999 89999998 69999999999888643
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.38 E-value=0.00024 Score=59.58 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=43.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhH
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKR 311 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~r 311 (458)
....||+||.++..++...||.+|..||..||+||..+|...|...++
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcccc
Confidence 356899999999999999999999999999999999999998876543
No 81
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.36 E-value=9.1e-05 Score=61.79 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc--ccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGI--RKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~--~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
.--.||.|||+.|+..+++.|. ..|..||+.|.+|+..|+++|++.+++
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3347999999999999999984 369999999999999999999987653
No 82
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.43 E-value=3.2e-05 Score=61.27 Aligned_cols=46 Identities=22% Similarity=0.443 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCc--ccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 214 GQWTTEEDRLLIRLVDQFGI--RKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~--~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
-.||.|||+.|+..+++.|. .-|..||..| +|++.|+.+|++.+++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 36999999999999999994 3699999999 9999999999988764
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.27 E-value=0.00053 Score=54.38 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=41.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCCcHHHHHh-hCCCCCHHHHHHHHHHH
Q 046859 264 KKDIWSEEEDKALIEAHAEIGNKWAEIAK-RLPGRTENSIKNHWNAT 309 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~kWs~IAk-~lpgRT~~qcKnRw~~l 309 (458)
....||+||-.+..+++.+||..|..|++ .||+||..+|...|..-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 34689999999999999999999999999 58999999999988743
No 84
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.19 E-value=0.00021 Score=75.44 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcc
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLR 260 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~ 260 (458)
...+||.+|-.++++++.+|| ++|..||+.+++||..||+.+|.++-+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999 899999999999999999999976433
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.17 E-value=0.0012 Score=61.78 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=72.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--cccchhhhcc--CCCCchhhhHhhhhhhc----------------------------
Q 046859 212 VKGQWTTEEDRLLIRLVDQFG--IRKWSHIAQM--LPGRIGKQCRERWHNHL---------------------------- 259 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G--~~nW~~IA~~--LpgRt~~Qcr~RW~~~L---------------------------- 259 (458)
....||..|-..|++++.+|| ..+|..|+.. |.+|+...++..+..++
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT 85 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence 446799999999999999999 4679999864 67888766554322110
Q ss_pred -----------------------ccc--------------------cccCCCChHHHHHHHHHHHHhC-CcHHHHHhh--
Q 046859 260 -----------------------RPD--------------------IKKDIWSEEEDKALIEAHAEIG-NKWAEIAKR-- 293 (458)
Q Consensus 260 -----------------------~p~--------------------ikk~~WT~EED~~Llelv~k~G-~kWs~IAk~-- 293 (458)
+.. .-...||++||..|+..+.+|| ++|..|..-
T Consensus 86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~ 165 (211)
T 4b4c_A 86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD 165 (211)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence 000 0122499999999999999999 999999763
Q ss_pred C--C--------C--CCHHHHHHHHHHHhHh
Q 046859 294 L--P--------G--RTENSIKNHWNATKRR 312 (458)
Q Consensus 294 l--p--------g--RT~~qcKnRw~~l~rr 312 (458)
| . . ++...+..|-.++++-
T Consensus 166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 166 LSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred cCccccccccccccCCChHHHHHHHHHHHHH
Confidence 2 1 2 4456788887777664
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.11 E-value=0.00038 Score=58.29 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhh
Q 046859 213 KGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHN 257 (458)
Q Consensus 213 kG~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~ 257 (458)
...||+||-++..+....|| ++|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45799999999999999999 899999999999999999998864
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.02 E-value=0.00063 Score=53.97 Aligned_cols=45 Identities=20% Similarity=0.388 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccchhhhc-cCCCCchhhhHhhhhh
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGIRKWSHIAQ-MLPGRIGKQCRERWHN 257 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~~nW~~IA~-~LpgRt~~Qcr~RW~~ 257 (458)
....||+||-.+..+.+..|| ++|..|++ .||+|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 346899999999999999999 79999999 5999999999998864
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.94 E-value=0.00069 Score=55.16 Aligned_cols=49 Identities=16% Similarity=0.517 Sum_probs=41.5
Q ss_pred cCCCChHHHHHHHHHHHHhCC----------cHHHHHhhCC----CCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIGN----------KWAEIAKRLP----GRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~----------kWs~IAk~lp----gRT~~qcKnRw~~l~rr~ 313 (458)
...||.+|-..||+++..... .|..||..|. .||+.||+.+|..|.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999976431 4999999862 699999999999998874
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.78 E-value=0.00041 Score=56.49 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---------ccchhhhccCC----CCchhhhHhhhhhhcc
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGI---------RKWSHIAQMLP----GRIGKQCRERWHNHLR 260 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~---------~nW~~IA~~Lp----gRt~~Qcr~RW~~~L~ 260 (458)
+...||.+|-.+|+.+...... ..|..||..|. .||+.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999976431 15999998874 6999999999998764
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.64 E-value=0.0079 Score=61.70 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHhCcccchhhhccCC-CCchhhhHhhhhhh----------------------------------
Q 046859 214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-GRIGKQCRERWHNH---------------------------------- 258 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-gRt~~Qcr~RW~~~---------------------------------- 258 (458)
+.||.-+=..++.++.+||..+-..||..|. |+|...|+....-+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888899999999777889998887 88877776432100
Q ss_pred -------------c----ccc-cccCCCChHHHHHHHHHHHHhC----CcHHHHHhh------------CCCCCHHHHHH
Q 046859 259 -------------L----RPD-IKKDIWSEEEDKALIEAHAEIG----NKWAEIAKR------------LPGRTENSIKN 304 (458)
Q Consensus 259 -------------L----~p~-ikk~~WT~EED~~Llelv~k~G----~kWs~IAk~------------lpgRT~~qcKn 304 (458)
| .+. .++..||++||..|+-++.+|| +.|.+|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 000 0345799999999999999999 569999554 45699999999
Q ss_pred HHHHHhHhhh
Q 046859 305 HWNATKRRQF 314 (458)
Q Consensus 305 Rw~~l~rr~~ 314 (458)
|-..|++-..
T Consensus 284 Rc~tLi~~Ie 293 (374)
T 2y9y_A 284 RGNTLLQCLE 293 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.36 E-value=0.0023 Score=53.70 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=47.1
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhCcccchhhhccCC-----CCchhhhHhhhhhhccc
Q 046859 201 KTMKIGKKSNVVKGQWTTEEDRLLIRLVDQFGIRKWSHIAQMLP-----GRIGKQCRERWHNHLRP 261 (458)
Q Consensus 201 ~RW~~~Lkp~lkkG~WT~EED~~Ll~lV~~~G~~nW~~IA~~Lp-----gRt~~Qcr~RW~~~L~p 261 (458)
+-|..+|+. ..||.||...|..|++++. -+|.-|+.... .||..++++||..+.+.
T Consensus 22 eEY~~~L~~----~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 455566653 6899999999999999999 89999998863 79999999999887653
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.09 E-value=0.45 Score=37.18 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=40.6
Q ss_pred cccCCCChHHHHHHHHHHHHhCCc---HHHHHhhC--CCCCHHHHHHHHHHH
Q 046859 263 IKKDIWSEEEDKALIEAHAEIGNK---WAEIAKRL--PGRTENSIKNHWNAT 309 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G~k---Ws~IAk~l--pgRT~~qcKnRw~~l 309 (458)
..+-.||+|.-+..+++|.++|.. |..|.+.| +|.|..+|+.+....
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 346689999999999999999954 88999885 799999999987764
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.87 E-value=0.34 Score=48.46 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=43.6
Q ss_pred ccCCCChHHHHHHHHHHHHhCC-cHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 264 KKDIWSEEEDKALIEAHAEIGN-KWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 264 kk~~WT~EED~~Llelv~k~G~-kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.-+.||..|....+.++.+||. .|..||..++|+|...|+..+.....+.
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 3467999999999999999995 7999999999999999988777766554
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.97 E-value=0.38 Score=44.58 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=41.9
Q ss_pred cccCCCChHHHHHHHHHHHHhC---CcHHHHHhh--CCCCCHHHHHHHHHHHhHh
Q 046859 263 IKKDIWSEEEDKALIEAHAEIG---NKWAEIAKR--LPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 263 ikk~~WT~EED~~Llelv~k~G---~kWs~IAk~--lpgRT~~qcKnRw~~l~rr 312 (458)
-....||+.|-..|+.++.+|| .+|..|+.. |.++|...++..+..++.+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999 689999975 7899999999877776654
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.67 E-value=0.45 Score=37.16 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCccc--chhhhccC--CCCchhhhHhhhhhh
Q 046859 210 NVVKGQWTTEEDRLLIRLVDQFGIRK--WSHIAQML--PGRIGKQCRERWHNH 258 (458)
Q Consensus 210 ~lkkG~WT~EED~~Ll~lV~~~G~~n--W~~IA~~L--pgRt~~Qcr~RW~~~ 258 (458)
...+-.||+|.-+..+.+|+..|..+ ++.|.+.| +|.|..+|+.+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45567899999999999999999432 77888876 489999999988765
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.19 E-value=0.8 Score=45.02 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=24.9
Q ss_pred CCCChHHHHHHHHHHHHhC-CcHHHHHh
Q 046859 266 DIWSEEEDKALIEAHAEIG-NKWAEIAK 292 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G-~kWs~IAk 292 (458)
..|+.+||..|+..|.+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999 99999975
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=71.02 E-value=8.3 Score=37.78 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=43.6
Q ss_pred cCCCChHHHHHHHHHHHHhC---CcHHHHHhh--CCCCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIG---NKWAEIAKR--LPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G---~kWs~IAk~--lpgRT~~qcKnRw~~l~rr~ 313 (458)
++.||+-|-..|++++.+|| .+|..|+.. |+.++...++.-+..++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 689999865 89999999999998887654
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=65.74 E-value=4.4 Score=41.53 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCc---ccchhhhccC------------CCCchhhhHhhhhhhc
Q 046859 212 VKGQWTTEEDRLLIRLVDQFGI---RKWSHIAQML------------PGRIGKQCRERWHNHL 259 (458)
Q Consensus 212 kkG~WT~EED~~Ll~lV~~~G~---~nW~~IA~~L------------pgRt~~Qcr~RW~~~L 259 (458)
++..||.+||..|+-++.+||- ++|.+|-..+ ..||+..+..|-..++
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 4557999999999999999998 8899995432 2466666666655443
No 99
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=62.03 E-value=19 Score=33.00 Aligned_cols=57 Identities=26% Similarity=0.494 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCccc--chhhhccCCCCchh---hhHhhhhhhcc-cccccCCCChHHHHHHH
Q 046859 221 DRLLIRLVDQFGIRK--WSHIAQMLPGRIGK---QCRERWHNHLR-PDIKKDIWSEEEDKALI 277 (458)
Q Consensus 221 D~~Ll~lV~~~G~~n--W~~IA~~LpgRt~~---Qcr~RW~~~L~-p~ikk~~WT~EED~~Ll 277 (458)
+.++..|+.+.|.++ =..|-..+.+.+-. ++-+.|..-.. |..-.|-||.|+|+.|.
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 456667778888654 23444456555544 55555555444 34568999999999875
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.36 E-value=19 Score=26.17 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+++ .+..++.++...|-.+.+||..+ |-|...++.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44555666667788999999999 89999999887776554
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.73 E-value=16 Score=30.98 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC--------cHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 275 ALIEAHAEIGN--------KWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 275 ~Llelv~k~G~--------kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
+|..+|.+.|+ .|..||..|.--....+|..|..++-.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 47777887773 6999999984444788999998877553
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=48.07 E-value=26 Score=26.28 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHHHHHHHHHH----hCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 272 EDKALIEAHAE----IGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 272 ED~~Llelv~k----~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.+..++.+.-- .|-.|.+||..+ |-|...|+.+....+++-
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445555543 567899999999 999999999877766553
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=45.26 E-value=19 Score=31.01 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=40.8
Q ss_pred HHHHHHHHhCc-------ccchhhhccCCC-C----chhhhHhhhhhhcccccccCCCChHHHHHHHHHHH
Q 046859 223 LLIRLVDQFGI-------RKWSHIAQMLPG-R----IGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHA 281 (458)
Q Consensus 223 ~Ll~lV~~~G~-------~nW~~IA~~Lpg-R----t~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~ 281 (458)
.|..+|.+.|. +.|..||..|.- . .....|..|.++|.+-- ..+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 56677777772 469999999841 1 24578899999887643 378899999887764
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=44.28 E-value=36 Score=28.09 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=27.4
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHHhHhh
Q 046859 275 ALIEAHAEIG--------NKWAEIAKRLPGRT----ENSIKNHWNATKRRQ 313 (458)
Q Consensus 275 ~Llelv~k~G--------~kWs~IAk~lpgRT----~~qcKnRw~~l~rr~ 313 (458)
.|..+|.+.| +.|.+||..|.--. ..++|..|...+-.-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4667777777 36999999983322 467788887776543
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=43.18 E-value=32 Score=29.13 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=28.8
Q ss_pred HHHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHHhHhh
Q 046859 274 KALIEAHAEIG--------NKWAEIAKRLPGRT----ENSIKNHWNATKRRQ 313 (458)
Q Consensus 274 ~~Llelv~k~G--------~kWs~IAk~lpgRT----~~qcKnRw~~l~rr~ 313 (458)
-+|..+|.+.| ++|.+||..|.--. ...+|..|..++-.-
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 35777888887 36999999983322 467888888877654
No 106
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=42.82 E-value=33 Score=31.34 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=27.7
Q ss_pred HHHHHHHhcCC-CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 046859 198 SVRKTMKIGKK-SNVVKGQWTTEEDRLLI--------RLVDQFG 232 (458)
Q Consensus 198 qCR~RW~~~Lk-p~lkkG~WT~EED~~Ll--------~lV~~~G 232 (458)
.+-..|+.... |.-..|-||+|+|+.|. +|++++|
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 66677777777 46789999999999886 6667777
No 107
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.63 E-value=27 Score=25.76 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=30.1
Q ss_pred HHHHHHHHHH----HhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 272 EDKALIEAHA----EIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 272 ED~~Llelv~----k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.+..++.+.- ..|-.+.+||..+ |-|...++.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3344455543 2467899999999 999999999887776653
No 108
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=42.22 E-value=43 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCC--CC---CHHHHHHHHHHHhHhhhhh
Q 046859 275 ALIEAHAEIG--------NKWAEIAKRLP--GR---TENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 275 ~Llelv~k~G--------~kWs~IAk~lp--gR---T~~qcKnRw~~l~rr~~sk 316 (458)
+|..+|.+.| +.|.+||..|. .. ....+|..|..++-.....
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 4677777777 36999999983 22 2567899998887765443
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.65 E-value=40 Score=28.73 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=27.0
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCCC----HHHHHHHHHHHhHhh
Q 046859 275 ALIEAHAEIG--------NKWAEIAKRLPGRT----ENSIKNHWNATKRRQ 313 (458)
Q Consensus 275 ~Llelv~k~G--------~kWs~IAk~lpgRT----~~qcKnRw~~l~rr~ 313 (458)
+|..+|.+.| ++|.+||..|.-.+ ...+|..|..++-.-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4667777777 36999999983322 356788887766553
No 110
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=38.67 E-value=42 Score=28.62 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=27.9
Q ss_pred HHHHHHHHhCC--------cHHHHHhhCCCCC----HHHHHHHHHHHhHhh
Q 046859 275 ALIEAHAEIGN--------KWAEIAKRLPGRT----ENSIKNHWNATKRRQ 313 (458)
Q Consensus 275 ~Llelv~k~G~--------kWs~IAk~lpgRT----~~qcKnRw~~l~rr~ 313 (458)
+|..+|.+.|+ .|.+||..|.--+ ..++|..|..++..-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46777777773 6999999983322 457788888777654
No 111
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=38.14 E-value=24 Score=30.35 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC--------cHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 275 ALIEAHAEIGN--------KWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 275 ~Llelv~k~G~--------kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
+|..+|.+.|+ +|.+||..|.--....+|..|..++-.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 35566666663 5999999984444888999998877654
No 112
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.27 E-value=1.8e+02 Score=24.22 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhh------cccccc----cCCCChHHHHHHHHHHHHh
Q 046859 214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNH------LRPDIK----KDIWSEEEDKALIEAHAEI 283 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~------L~p~ik----k~~WT~EED~~Llelv~k~ 283 (458)
...|.++-..++.++. .| .....||..+ |.+...++. |... +.+... ....++++.+.|++++.+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV~r-w~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCVSK-ILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHH-HHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHH-HHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4689999888888884 56 5678999988 666655554 3322 222211 2347888888888887664
Q ss_pred CC-cHHHHHhhC
Q 046859 284 GN-KWAEIAKRL 294 (458)
Q Consensus 284 G~-kWs~IAk~l 294 (458)
.. .-.+|+..+
T Consensus 107 ~~~s~~~i~~~l 118 (149)
T 1k78_A 107 PTMFAWEIRDRL 118 (149)
T ss_dssp TTCCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 31 223454443
No 113
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.24 E-value=1.7e+02 Score=23.78 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccc-c-----cccCCCChHHHHHHHHHHHHhC-Cc
Q 046859 214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRP-D-----IKKDIWSEEEDKALIEAHAEIG-NK 286 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p-~-----ikk~~WT~EED~~Llelv~k~G-~k 286 (458)
...|.++-..++.++. .| ..-..||..+ |.+...|+. |...... . -.....|++++..|+.+ ...+ -.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~l-gis~~Tv~r-~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKI-SRSRHCIRV-YLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHH-HHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHH-HHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCC
Confidence 4678888888888774 56 5678999988 777766654 4322211 1 11234788888888877 3333 34
Q ss_pred HHHHHhhCCC--CCHHHHHHHH
Q 046859 287 WAEIAKRLPG--RTENSIKNHW 306 (458)
Q Consensus 287 Ws~IAk~lpg--RT~~qcKnRw 306 (458)
-.+|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 56788888 4 5666565443
No 114
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=36.99 E-value=1.7e+02 Score=24.87 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhc------ccccc----cCCCChHHHHHHHHHHHHh
Q 046859 214 GQWTTEEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHL------RPDIK----KDIWSEEEDKALIEAHAEI 283 (458)
Q Consensus 214 G~WT~EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L------~p~ik----k~~WT~EED~~Llelv~k~ 283 (458)
...|.++-..++.++. .| .....||+.+ |.+...|+. |.+.. .+... ....++++.+.|++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV~r-wl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCVSK-ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHHHH-HHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHH-HHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 3688888888888884 56 5678999988 666655554 44322 22111 2347888778888887654
No 115
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.74 E-value=18 Score=30.54 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=30.0
Q ss_pred HHHHHHHHhCc-------ccchhhhccCCCCchhhhHhhhhhhccc
Q 046859 223 LLIRLVDQFGI-------RKWSHIAQMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 223 ~Ll~lV~~~G~-------~nW~~IA~~LpgRt~~Qcr~RW~~~L~p 261 (458)
.|..+|.+.|. +.|..||..|.--.+..++..|.++|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57778877772 4699999988644478889999888865
No 116
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=34.38 E-value=52 Score=25.72 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 272 ED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
.+..++.++...|-.-.+||..| |-+...|+.|....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455566556778899999999 99999999988776554
No 117
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.65 E-value=36 Score=29.70 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 271 EEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 271 EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
+-|.+|+++.++-| -.|.+||+.+ |-|...|+.|++.+.+...-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888887776 4699999999 999999999999998877544
No 118
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=30.58 E-value=29 Score=28.04 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=24.8
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCCC---C-HHHHHHHHHHHhHh
Q 046859 275 ALIEAHAEIG--------NKWAEIAKRLPGR---T-ENSIKNHWNATKRR 312 (458)
Q Consensus 275 ~Llelv~k~G--------~kWs~IAk~lpgR---T-~~qcKnRw~~l~rr 312 (458)
+|..+|.+.| +.|.+||..|.-- + ..++|..|...+-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4666677666 4699999997321 1 45677777665543
No 119
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=29.05 E-value=64 Score=27.69 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=47.6
Q ss_pred CCCCCHHHH--HHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHHHHHhCC-----
Q 046859 213 KGQWTTEED--RLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEAHAEIGN----- 285 (458)
Q Consensus 213 kG~WT~EED--~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llelv~k~G~----- 285 (458)
+..|.+.+. +.|.+..+..| .....|.. +.||.-. + -+|..+|.+.|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rG-tpl~~~P~-i~gk~lD-L----------------------~~Ly~~V~~~GG~~~Vt 61 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQG-ITMDELPL-IGGCELD-L----------------------ACFFRLINEMGGMQQVT 61 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTT-CCCSSCCE-ETTEECC-H----------------------HHHHHHHHHTTSHHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcC-CCCCCCCc-CCCEecc-H----------------------HHHHHHHHHcCcHHHhc
Confidence 457988776 36777777777 33443332 2233221 1 246778888884
Q ss_pred ---cHHHHHhhC--CCC---CHHHHHHHHHHHhHhh
Q 046859 286 ---KWAEIAKRL--PGR---TENSIKNHWNATKRRQ 313 (458)
Q Consensus 286 ---kWs~IAk~l--pgR---T~~qcKnRw~~l~rr~ 313 (458)
.|.+||..| |.- ....+|..|..++-..
T Consensus 62 ~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 62 DLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred ccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999998 322 2467888888776654
No 120
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=28.77 E-value=40 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.460 Sum_probs=26.9
Q ss_pred HHHHHHHHhC--------CcHHHHHhhCCC--C---CHHHHHHHHHHHhHh
Q 046859 275 ALIEAHAEIG--------NKWAEIAKRLPG--R---TENSIKNHWNATKRR 312 (458)
Q Consensus 275 ~Llelv~k~G--------~kWs~IAk~lpg--R---T~~qcKnRw~~l~rr 312 (458)
.|..+|.+.| +.|.+||..|.- . ...++|..|..++-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4677777777 469999999732 1 235788888877654
No 121
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=28.00 E-value=70 Score=27.30 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCC--------cHHHHHhhCC--CC---CHHHHHHHHHHHhHhhhh
Q 046859 274 KALIEAHAEIGN--------KWAEIAKRLP--GR---TENSIKNHWNATKRRQFS 315 (458)
Q Consensus 274 ~~Llelv~k~G~--------kWs~IAk~lp--gR---T~~qcKnRw~~l~rr~~s 315 (458)
-+|..+|.+.|+ .|.+||..|. .. ....+|..|..++-.-..
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 457788888884 6999999982 22 157789999888876543
No 122
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=27.74 E-value=1.1e+02 Score=22.60 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 268 WSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 268 WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
+|+.|-+.| .++ ..|-...+||..+ |-+...++.+...++++-
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455554444 444 5678899999999 889999999887766553
No 123
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.34 E-value=36 Score=28.80 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=27.6
Q ss_pred HHHHHHHHhCc-------ccchhhhccCCCCc----hhhhHhhhhhhccc
Q 046859 223 LLIRLVDQFGI-------RKWSHIAQMLPGRI----GKQCRERWHNHLRP 261 (458)
Q Consensus 223 ~Ll~lV~~~G~-------~nW~~IA~~LpgRt----~~Qcr~RW~~~L~p 261 (458)
.|..+|.+.|. +.|..||..|.--. +.++|..|.++|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777772 46999999984221 45678888887754
No 124
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=26.91 E-value=96 Score=22.75 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHH
Q 046859 270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNH 305 (458)
Q Consensus 270 ~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnR 305 (458)
.-|.+.|.++...+++++++.|+.| |=+...+..+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rk 52 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477788999999999999999998 6565554443
No 125
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.56 E-value=1.1e+02 Score=25.76 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 271 EEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 271 EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
+-|..|+.++.+.| -.+++||+.+ |-|...|..|.+.+.+...-+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44567778777766 4699999999 889999999999998876543
No 126
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.21 E-value=90 Score=24.18 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=28.8
Q ss_pred HHHHHHHHHH----hCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 273 DKALIEAHAE----IGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 273 D~~Llelv~k----~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+..++.+.-- .|-.+.+||..+ |-|...|+.+....+++
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3445555443 467899999999 99999999987666554
No 127
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.78 E-value=96 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHh
Q 046859 271 EEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRR 312 (458)
Q Consensus 271 EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr 312 (458)
+.+..++.+....|-...+||..+ |-|...+++|....+++
T Consensus 143 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 143 EDLRMAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 334445555555678899999999 99999999988776654
No 128
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=25.34 E-value=1.2e+02 Score=24.02 Aligned_cols=44 Identities=20% Similarity=0.099 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 267 IWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 267 ~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
..|+.|-+.|.- + ..|-.-.+||..| |-|...|+.+...++++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666655544 4 7788899999999 899999999887776653
No 129
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=24.48 E-value=56 Score=28.81 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhCccc-----chhhhccCCCCchhhhHhhhhhhcccccccCCCChHHHHHHHHH
Q 046859 217 TTEEDRLLIRLVDQFGIRK-----WSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKALIEA 279 (458)
Q Consensus 217 T~EED~~Ll~lV~~~G~~n-----W~~IA~~LpgRt~~Qcr~RW~~~L~p~ikk~~WT~EED~~Llel 279 (458)
..+.=-.|+.+++-.++.. =..||..+.|+|+.+||..+. + ...+|+||++.+.+-
T Consensus 94 d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 94 DQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp -------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 3333334555555555332 268899999999999999763 2 235899999876543
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.34 E-value=1.5e+02 Score=23.45 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=35.5
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
....|+.|-+.|.-+. .|-.-.+||..| |-+...|+.+...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3457777776655443 888999999999 999999999988877654
No 131
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.33 E-value=1.4e+02 Score=21.57 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 266 DIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 266 ~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
..+|+.|-+.|.- + ..|....+||..+ |-|...++.+...+.++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4577777666554 4 5678899999999 889999999887766543
No 132
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.06 E-value=1.2e+02 Score=26.70 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 270 EEEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 270 ~EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
.+-|..|+.++.+.| ..|.+||+.+ |-|...|..|.+.+.+...-+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 345677888888777 4699999999 899999999999998776543
No 133
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.61 E-value=1.1e+02 Score=25.14 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHH
Q 046859 269 SEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKN 304 (458)
Q Consensus 269 T~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKn 304 (458)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 55566778888889999999999999 777776644
No 134
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.16 E-value=1.1e+02 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHH
Q 046859 270 EEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNH 305 (458)
Q Consensus 270 ~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnR 305 (458)
.-|...|.+++.++|++.++.|+.| |=+...++.|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477788999999999999999999 7777666554
No 135
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.92 E-value=1.2e+02 Score=23.32 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 267 IWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 267 ~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+...++++-
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467766655544 4 5788899999999 899999999887766553
No 136
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.13 E-value=47 Score=28.27 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=26.6
Q ss_pred HHHHHHHHhCc-------ccchhhhccCCCCc----hhhhHhhhhhhccc
Q 046859 223 LLIRLVDQFGI-------RKWSHIAQMLPGRI----GKQCRERWHNHLRP 261 (458)
Q Consensus 223 ~Ll~lV~~~G~-------~nW~~IA~~LpgRt----~~Qcr~RW~~~L~p 261 (458)
.|..+|.+.|. +.|..||..|.--. +..+|..|.++|.+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56777777762 46999999884221 35677777777653
No 137
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=22.00 E-value=35 Score=30.77 Aligned_cols=10 Identities=40% Similarity=0.724 Sum_probs=4.8
Q ss_pred cCCCCCCCCC
Q 046859 52 DRHHHDLDDD 61 (458)
Q Consensus 52 ~~~~~~~~~~ 61 (458)
||++|++|.+
T Consensus 158 ~~~~~~~~~~ 167 (171)
T 2k8i_A 158 HHHDHDHDHH 167 (171)
T ss_dssp SSSCSCCCCS
T ss_pred cCCCCccccc
Confidence 4545554444
No 138
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.81 E-value=1.4e+02 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 272 EDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 272 ED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
.+..++.++...|-...+||..+ |-|...++.|....+++-
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 33455566666788999999999 999999998877665543
No 139
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.80 E-value=49 Score=27.22 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=26.6
Q ss_pred HHHHHHHHhCc-------ccchhhhccCCCCc----hhhhHhhhhhhccc
Q 046859 223 LLIRLVDQFGI-------RKWSHIAQMLPGRI----GKQCRERWHNHLRP 261 (458)
Q Consensus 223 ~Ll~lV~~~G~-------~nW~~IA~~LpgRt----~~Qcr~RW~~~L~p 261 (458)
.|..+|.+.|. +.|..||..|.--. +.+.+..|.++|.+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 56667766662 46999999984222 45778888777754
No 140
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.79 E-value=1.5e+02 Score=20.72 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 274 KALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 274 ~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
..++.+ ...|-.-.+||..+ |-|...++.+...+.++-
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 345555 36688889999999 899999999888776653
No 141
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.58 E-value=40 Score=29.36 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCcccchhhhccCCCCchhhhHhhhhhhccccc
Q 046859 219 EEDRLLIRLVDQFGIRKWSHIAQMLPGRIGKQCRERWHNHLRPDI 263 (458)
Q Consensus 219 EED~~Ll~lV~~~G~~nW~~IA~~LpgRt~~Qcr~RW~~~L~p~i 263 (458)
+-|..|+.+.++.|.-.|.+||+.+ |-+...|+.|+.++....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 4577888888888877899999999 8999999999988765544
No 142
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.48 E-value=54 Score=27.95 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHHHHHHHhCc-------ccchhhhccCCC-C---chhhhHhhhhhhccc
Q 046859 223 LLIRLVDQFGI-------RKWSHIAQMLPG-R---IGKQCRERWHNHLRP 261 (458)
Q Consensus 223 ~Ll~lV~~~G~-------~nW~~IA~~Lpg-R---t~~Qcr~RW~~~L~p 261 (458)
.|..+|.+.|. +.|..||..|.- . .+.++|..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777762 479999998852 2 245778888887754
No 143
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=20.61 E-value=1.7e+02 Score=24.64 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhC-CcHHHHHhhCCCCCHHHHHHHHHHHhHhhhhh
Q 046859 271 EEDKALIEAHAEIG-NKWAEIAKRLPGRTENSIKNHWNATKRRQFSK 316 (458)
Q Consensus 271 EED~~Llelv~k~G-~kWs~IAk~lpgRT~~qcKnRw~~l~rr~~sk 316 (458)
+-|..|+.++.+.| ..+++||+.+ |-|...|..|.+.+.....-+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 34567778877776 4699999999 899999999999998776543
No 144
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.30 E-value=2.9e+02 Score=22.18 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=36.1
Q ss_pred cCCCChHHHHHHHHHHHHhCCcHHHHHhhCCCCCHHHHHHHHHHHhHhh
Q 046859 265 KDIWSEEEDKALIEAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ 313 (458)
Q Consensus 265 k~~WT~EED~~Llelv~k~G~kWs~IAk~lpgRT~~qcKnRw~~l~rr~ 313 (458)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++-
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45678888776644 3 3788899999999 889999999888776654
No 145
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.26 E-value=1.1e+02 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCcHHHHHhhCCCCCHHHHH
Q 046859 275 ALIEAHAEIGNKWAEIAKRLPGRTENSIK 303 (458)
Q Consensus 275 ~Llelv~k~G~kWs~IAk~lpgRT~~qcK 303 (458)
.|..+....|..|..+|+.| |=+..+|.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 46666788999999999999 76666653
No 146
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=20.16 E-value=25 Score=30.29 Aligned_cols=39 Identities=33% Similarity=0.418 Sum_probs=27.5
Q ss_pred HHHHHHHHhCc-------ccchhhhccCCCCchhhhHhhhhhhccc
Q 046859 223 LLIRLVDQFGI-------RKWSHIAQMLPGRIGKQCRERWHNHLRP 261 (458)
Q Consensus 223 ~Ll~lV~~~G~-------~nW~~IA~~LpgRt~~Qcr~RW~~~L~p 261 (458)
.|..+|.+.|. +.|..||..|.--.+..+|..|.++|.|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 45666665552 4699999988533377888888887754
Done!