BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046860
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
Query: 71 SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130
+ S+ L L LS+N L GTIP + +L+ L L + G IP E+ + LE L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 131 IDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPP 190
+D N L G IP L N L G +P +G L NL L L +N+ SG+IP
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 191 SL-EYPMLTTLNLDFNHFTSYLPHNVCRGS 219
L + L L+L+ N F +P + + S
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 56 ISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPP--------------------- 94
+SL + G + DF + L LDLS N +G +PP
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 95 ----QISNLTNLTTLYFGGDQFSGNIPPEVGLMSH------------------------- 125
+ + L L ++FSG +P + +S
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 126 --LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNN 183
L+ L++ N G IPP L FN+L+G++P SLG+L+ L+ L L+ N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 184 LSGSIPPSLEY-PMLTTLNLDFNHFTSYLP 212
L G IP L Y L TL LDFN T +P
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 71 SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130
+F + + +LD+SYN L G IP +I ++ L L G + SG+IP EVG + L +L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 131 IDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVP 165
+ +N+LDG IP + N+L+G +P
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 69 DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLEL 128
D S +L +LD+S N F T P + + + L L G++ SG+ + + L+L
Sbjct: 193 DVDVSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 129 LHIDTNQLDGSIPP---------ELGQXXXXXXXXXFF--------------NHLNGSVP 165
L+I +NQ G IPP L + F NH G+VP
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 166 PSLGNLTNLQQLILFSNNLSGSIPPS--LEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCR 223
P G+ + L+ L L SNN SG +P L+ L L+L FN F+ LP ++ S
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS---- 367
Query: 224 FSLASLVFLD 233
ASL+ LD
Sbjct: 368 ---ASLLTLD 374
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 63 LKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGL 122
L GT+ S S L L L N L G IP ++ + L TL + +G IP +
Sbjct: 430 LSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 123 MSHLELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSN 182
++L + + N+L G IP +G+ N +G++P LG+ +L L L +N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 183 NLSGSIPPSL 192
+G+IP ++
Sbjct: 549 LFNGTIPAAM 558
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
E G Q++ L+ + G+ P + L + N L G IP E+G
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 147 XXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFN 205
N ++GS+P +G+L L L L SN L G IP ++ MLT ++L N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 206 HFTSYLPH 213
+ + +P
Sbjct: 715 NLSGPIPE 722
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 47/198 (23%)
Query: 77 HLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV---------------- 120
+LA L LS N G IP ++ + +L L + F+G IP +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 121 --------------GLMSHLELLHIDTNQLD----------------GSIPPELGQXXXX 150
G + LE I + QL+ G P
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 151 XXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSL-EYPMLTTLNLDFNHFTS 209
+N L+G +P +G++ L L L N++SGSIP + + L L+L N
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 210 YLPHNVCRGSMCCRFSLA 227
+P + +M L+
Sbjct: 695 RIPQAMSALTMLTEIDLS 712
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 96/289 (33%), Gaps = 93/289 (32%)
Query: 3 EEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCNDAGRVIKISLP--- 59
E L+ +K L N LLP W SS +PC + G++C D +V I L
Sbjct: 12 REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDD-KVTSIDLSSKP 61
Query: 60 -KIG-----------------------LKGTLHDFSFSSFPHLAYLDLSYNELFGTI--- 92
+G + G++ F S+ L LDLS N L G +
Sbjct: 62 LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTL 119
Query: 93 ---------------------PPQIS---NLTNLTTLYFGGDQFSGN------IPPEVGL 122
P ++S L +L L + SG + G
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 123 MSH-------------------LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGS 163
+ H LE L + +N I P LG N L+G
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGD 238
Query: 164 VPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLP 212
++ T L+ L + SN G IPP L L L+L N FT +P
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIP 286
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 1/150 (0%)
Query: 71 SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130
+ S+ L L LS+N L GTIP + +L+ L L + G IP E+ + LE L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 131 IDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPP 190
+D N L G IP L N L G +P +G L NL L L +N+ SG+IP
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 191 SL-EYPMLTTLNLDFNHFTSYLPHNVCRGS 219
L + L L+L+ N F +P + + S
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 56 ISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPP--------------------- 94
+SL + G + DF + L LDLS N +G +PP
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 95 ----QISNLTNLTTLYFGGDQFSGNIPPEVGLMSH------------------------- 125
+ + L L ++FSG +P + +S
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 390
Query: 126 --LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNN 183
L+ L++ N G IPP L FN+L+G++P SLG+L+ L+ L L+ N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 184 LSGSIPPSLEY-PMLTTLNLDFNHFTSYLP 212
L G IP L Y L TL LDFN T +P
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 71 SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130
+F + + +LD+SYN L G IP +I ++ L L G + SG+IP EVG + L +L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 131 IDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVP 165
+ +N+LDG IP + N+L+G +P
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 69 DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLEL 128
D S +L +LD+S N F T P + + + L L G++ SG+ + + L+L
Sbjct: 190 DVDVSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 129 LHIDTNQLDGSIPP---------ELGQXXXXXXXXXFF--------------NHLNGSVP 165
L+I +NQ G IPP L + F NH G+VP
Sbjct: 249 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 166 PSLGNLTNLQQLILFSNNLSGSIPPS--LEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCR 223
P G+ + L+ L L SNN SG +P L+ L L+L FN F+ LP ++ S
Sbjct: 309 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS---- 364
Query: 224 FSLASLVFLD 233
ASL+ LD
Sbjct: 365 ---ASLLTLD 371
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
E G Q++ L+ + G+ P + L + N L G IP E+G
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 147 XXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFN 205
N ++GS+P +G+L L L L SN L G IP ++ MLT ++L N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 206 HFTSYLPH 213
+ + +P
Sbjct: 712 NLSGPIPE 719
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 77/219 (35%), Gaps = 48/219 (21%)
Query: 56 ISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGN 115
ISL L G + + +LA L LS N G IP ++ + +L L + F+G
Sbjct: 492 ISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 116 IPPEV------------------------------GLMSHLELLHIDTNQLD-------- 137
IP + G + LE I + QL+
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 138 --------GSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIP 189
G P +N L+G +P +G++ L L L N++SGSIP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 190 PSL-EYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLA 227
+ + L L+L N +P + +M L+
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 96/289 (33%), Gaps = 93/289 (32%)
Query: 3 EEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCNDAGRVIKISLP--- 59
E L+ +K L N LLP W SS +PC + G++C D +V I L
Sbjct: 9 REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDD-KVTSIDLSSKP 58
Query: 60 -KIG-----------------------LKGTLHDFSFSSFPHLAYLDLSYNELFGTI--- 92
+G + G++ F S+ L LDLS N L G +
Sbjct: 59 LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTL 116
Query: 93 ---------------------PPQIS---NLTNLTTLYFGGDQFSGN------IPPEVGL 122
P ++S L +L L + SG + G
Sbjct: 117 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 123 MSH-------------------LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGS 163
+ H LE L + +N I P LG N L+G
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGD 235
Query: 164 VPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLP 212
++ T L+ L + SN G IPP L L L+L N FT +P
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIP 283
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 17/211 (8%)
Query: 3 EEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCNDAGRVIKISLPKIG 62
++ ALL+ K L N + L SW TT+ ++ W G+ C+ + +++ +
Sbjct: 6 QDKQALLQIKKDL--GNPTTLSSWL-PTTDCCNR----TWLGVLCDTDTQTYRVN--NLD 56
Query: 63 LKGTLHDFSF---SSFPHLAYLDLSY----NELFGTIPPQISNLTNLTTLYFGGDQFSGN 115
L G + SS +L YL+ Y N L G IPP I+ LT L LY SG
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 116 IPPEVGLMSHLELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNL- 174
IP + + L L N L G++PP + N ++G++P S G+ + L
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176
Query: 175 QQLILFSNNLSGSIPPSLEYPMLTTLNLDFN 205
+ + N L+G IPP+ L ++L N
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 92 IPPQISNLTNLTTLYFGG-DQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQXXXX 150
IP ++NL L LY GG + G IPP + ++ L L+I + G+IP L Q
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 151 XXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE--YPMLTTLNLDFNHFT 208
+N L+G++PPS+ +L NL + N +SG+IP S + T++ + N T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 209 SYLP 212
+P
Sbjct: 188 GKIP 191
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 61/180 (33%), Gaps = 73/180 (40%)
Query: 63 LKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGG------------- 109
+ G + DF S L LD SYN L GT+PP IS+L NL + F G
Sbjct: 113 VSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 110 ------------DQFSGNIPP--------------------------------------- 118
++ +G IPP
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 119 -------EVGLMSHLELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNL 171
+VGL +L L + N++ G++P L Q FN+L G +P GNL
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 81 LDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSI 140
LDLS ++F I I LT LY G+ + +P E+ +S+L +L + N+L S+
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSL 285
Query: 141 PPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQ 175
P ELG FF+++ ++P GNL NLQ
Sbjct: 286 PAELG-SCFQLKYFYFFDNMVTTLPWEFGNLCNLQ 319
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 29/164 (17%)
Query: 55 KISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNEL-----------------------FGT 91
K+ L GL TL D +F L +L+L YN+L +
Sbjct: 39 KLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 92 IPPQI-SNLTNLTTLYFGGDQFSGNIPPEV-GLMSHLELLHIDTNQLDGSIPPELGQXXX 149
+P + +LT L LY GG+Q ++P V ++ L+ L ++TNQL SIP
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155
Query: 150 XXXXXXFFNHLNGSVP-PSLGNLTNLQQLILFSNNLSGSIPPSL 192
+ SVP + L LQ + LF N S +L
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 55 KISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNEL-----------------------FGT 91
K+ L GL TL D +F L +L+L YN+L +
Sbjct: 39 KLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 92 IPPQI-SNLTNLTTLYFGGDQFSGNIPPEV-GLMSHLELLHIDTNQLDGSIPPELGQXXX 149
+P + +LT L LY GG+Q ++P V ++ L+ L ++TNQL SIP
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155
Query: 150 XXXXXXFFNHLNGSVP-PSLGNLTNLQQLILFSNNLSGS 187
+ SVP + L LQ + LF N S
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 29 ATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT-LHDF-SFSSFPHLAYLDLSYN 86
AT N S I+P GI N L ++ L G L D + +S +L LDL+ N
Sbjct: 202 ATNNQISDITPL---GILTN---------LDELSLNGNQLKDIGTLASLTNLTDLDLANN 249
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
++ P +S LT LT L G +Q S NI P GL + L L ++ NQL+ P +
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-TALTNLELNENQLEDISP--ISN 303
Query: 147 XXXXXXXXXFFNHLNGSVP--------------------PSLGNLTNLQQLILFSNNLSG 186
+FN+++ P SL NLTN+ L N +S
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD 363
Query: 187 SIP 189
P
Sbjct: 364 LTP 366
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 29 ATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT-LHDF-SFSSFPHLAYLDLSYN 86
AT N S I+P GI N L ++ L G L D + +S +L LDL+ N
Sbjct: 201 ATNNQISDITPL---GILTN---------LDELSLNGNQLKDIGTLASLTNLTDLDLANN 248
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
++ P +S LT LT L G +Q S NI P GL + L L ++ NQL+ P +
Sbjct: 249 QISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-TALTNLELNENQLEDISP--ISN 302
Query: 147 XXXXXXXXXFFNHLNGSVP--------------------PSLGNLTNLQQLILFSNNLSG 186
+FN+++ P SL NLTN+ L N +S
Sbjct: 303 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISD 362
Query: 187 SIP 189
P
Sbjct: 363 LTP 365
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 29 ATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT-LHDF-SFSSFPHLAYLDLSYN 86
AT N S I+P GI N L ++ L G L D + +S +L LDL+ N
Sbjct: 202 ATNNQISDITPL---GILTN---------LDELSLNGNQLKDIGTLASLTNLTDLDLANN 249
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
++ P +S LT LT L G +Q S NI P GL + L L ++ NQL+ P +
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-TALTNLELNENQLEDISP--ISN 303
Query: 147 XXXXXXXXXFFNHLNGSVP--------------------PSLGNLTNLQQLILFSNNLSG 186
+FN+++ P SL NLTN+ L N +S
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISD 363
Query: 187 SIP 189
P
Sbjct: 364 LTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 29 ATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT-LHDF-SFSSFPHLAYLDLSYN 86
AT N S I+P GI N L ++ L G L D + +S +L LDL+ N
Sbjct: 202 ATNNQISDITPL---GILTN---------LDELSLNGNQLKDIGTLASLTNLTDLDLANN 249
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
++ P +S LT LT L G +Q S NI P GL + L L ++ NQL+ P +
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-TALTNLELNENQLEDISP--ISN 303
Query: 147 XXXXXXXXXFFNHLNGSVP--------------------PSLGNLTNLQQLILFSNNLSG 186
+FN+++ P SL NLTN+ L N +S
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD 363
Query: 187 SIP 189
P
Sbjct: 364 LTP 366
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 29 ATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT-LHDF-SFSSFPHLAYLDLSYN 86
AT N S I+P GI N L ++ L G L D + +S +L LDL+ N
Sbjct: 206 ATNNQISDITPL---GILTN---------LDELSLNGNQLKDIGTLASLTNLTDLDLANN 253
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
++ P +S LT LT L G +Q S NI P GL + L L ++ NQL+ P +
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-TALTNLELNENQLEDISP--ISN 307
Query: 147 XXXXXXXXXFFNHLNGSVP--------------------PSLGNLTNLQQLILFSNNLSG 186
+FN+++ P SL NLTN+ L N +S
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD 367
Query: 187 SIP 189
P
Sbjct: 368 LTP 370
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 29 ATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT-LHDF-SFSSFPHLAYLDLSYN 86
AT N S I+P GI N L ++ L G L D + +S +L LDL+ N
Sbjct: 201 ATNNQISDITPL---GILTN---------LDELSLNGNQLKDIGTLASLTNLTDLDLANN 248
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
++ P +S LT LT L G +Q S NI P GL + L L ++ NQL+ P +
Sbjct: 249 QISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-TALTNLELNENQLEDISP--ISN 302
Query: 147 XXXXXXXXXFFNHLNGSVP--------------------PSLGNLTNLQQLILFSNNLSG 186
+FN+++ P SL NLTN+ L N +S
Sbjct: 303 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD 362
Query: 187 SIP 189
P
Sbjct: 363 LTP 365
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 29 ATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT-LHDF-SFSSFPHLAYLDLSYN 86
AT N S I+P GI N L ++ L G L D + +S +L LDL+ N
Sbjct: 205 ATNNQISDITPL---GILTN---------LDELSLNGNQLKDIGTLASLTNLTDLDLANN 252
Query: 87 ELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ 146
++ P +S LT LT L G +Q S NI P GL + L L ++ NQL+ P +
Sbjct: 253 QISNLAP--LSGLTKLTELKLGANQIS-NISPLAGL-TALTNLELNENQLEDISP--ISN 306
Query: 147 XXXXXXXXXFFNHLNGSVP--------------------PSLGNLTNLQQLILFSNNLSG 186
+FN+++ P SL NLTN+ L N +S
Sbjct: 307 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD 366
Query: 187 SIP 189
P
Sbjct: 367 LTP 369
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 105 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 104 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 104 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 103 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 185 SG 186
Sbjct: 162 QS 163
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%)
Query: 72 FSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131
F S L YL L YNEL LT+L L +Q ++ L+ L +
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Query: 132 DTNQL 136
D NQL
Sbjct: 189 DNNQL 193
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 77 HLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV-GLMSHLELLHIDTNQ 135
YLDL N L LT+LT LY GG++ ++P V ++ L L++ TNQ
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87
Query: 136 LDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSL-GNLTNLQQLILFSNNLSGSIPPSLEY 194
L S+P + + S+P + LT L+ L L+ N L S+P + +
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGV-F 144
Query: 195 PMLTTLNLDFNH 206
LT+L + H
Sbjct: 145 DRLTSLQYIWLH 156
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 66 TLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTL 105
TL+ F+SFPHL L+L+ N + P +NL NL TL
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 105 QKLVALETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 103 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 67 LHDFS-FSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV-GLMS 124
+ +FS F S +L YLD+S+ + L++L L G+ F N P++ +
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 125 HLELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSL-GNLTNLQQLILFSNN 183
+L L + QL+ P N L SVP + LT+LQ++ L +N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNP 529
Query: 184 LSGSIP 189
S P
Sbjct: 530 WDCSCP 535
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 45 ISCNDAGRVIKISLPKIGLKG--TLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNL 102
IS +D R + + + G T+ + SFSS L +LDLSYN L L++L
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126
Query: 103 TTLYFGGDQFSGNIPPEVGLMSHLELLHI 131
T L G+ + E L SHL L I
Sbjct: 127 TFLNLLGNPY--KTLGETSLFSHLTKLQI 153
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 74 SFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQ------FSGNIPP-EVGLMSHL 126
++P L +DLSYNEL + + L LY ++ + IP +V +SH
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311
Query: 127 ELLHIDTNQ 135
LLH++ NQ
Sbjct: 312 HLLHVERNQ 320
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 127 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 40 CAWSGISCNDAG-RVIKISLPKI-------GLKGTLHDFSFSSFPHLAYLDLSYNELFGT 91
C + + C++ G +V+ +P+ G + TL S++ HL +DLS N +
Sbjct: 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL 69
Query: 92 IPPQISNLTNLTTLYFGGDQFSGNIPPEV--GLMSHLELLHIDTNQLDGSIPPE 143
SN+T L TL ++ IPP GL S L LL + N D S+ PE
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKS-LRLLSLHGN--DISVVPE 119
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 67 LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQF-SGNIPPEVGLMSH 125
L +SF SFP L LDLS E+ +L++L+TL G+ S + GL S
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 126 LELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNG-SVPPSLGNLTNLQQLILFSNNL 184
+L+ ++TN P +G N + +P NLTNL+ L L SN +
Sbjct: 103 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 185 SG 186
Sbjct: 162 QS 163
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 74 SFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQ------FSGNIPP-EVGLMSHL 126
++P L +DLSYNEL + + L LY ++ + IP +V +SH
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305
Query: 127 ELLHIDTNQ 135
LLH++ NQ
Sbjct: 306 HLLHVERNQ 314
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 45 ISCNDAGRVIKISLPKIGLKG--TLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNL 102
IS +D R + + + G T+ + SFSS L +LDLSYN L L++L
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 100
Query: 103 TTLYFGGDQFSGNIPPEVGLMSHLELLHI 131
T L G+ + E L SHL L I
Sbjct: 101 TFLNLLGNPY--KTLGETSLFSHLTKLQI 127
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 69 DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSH-LE 127
D F PHL L+L N+L G P +++ L G ++ I ++ L H L+
Sbjct: 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLK 105
Query: 128 LLHIDTNQLDGSIP 141
L++ NQ+ +P
Sbjct: 106 TLNLYDNQISCVMP 119
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 75 FPHLAYLDLSYNE 87
FPHLAY+D+ YNE
Sbjct: 118 FPHLAYVDIDYNE 130
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 75 FPHLAYLDLSYNE 87
FPHLAY+D+ YNE
Sbjct: 119 FPHLAYVDIDYNE 131
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 75 FPHLAYLDLSYNE 87
FPHLAY+D+ YNE
Sbjct: 110 FPHLAYVDIDYNE 122
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 82 DLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIP 141
DLS +++F + S+ T+L L ++ + ++HL+ L +DTNQL S+P
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVP 339
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 178 ILFSNNLSGSIPPSLEYP---------MLTTLNLDFNHFTS 209
I+ SNNL SIP + P +LTT++L FN TS
Sbjct: 702 IILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 66 TLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV-GLMS 124
+L D F +L YL+L++N+L LTNLT L +Q +P V ++
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT 181
Query: 125 HLELLHIDTNQLDGSIP 141
L+ L + NQL S+P
Sbjct: 182 QLKDLRLYQNQL-KSVP 197
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
Query: 67 LHDFS-FSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV-GLMS 124
LHD S +L YL L+ N+L LTNL L +Q +P V ++
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLT 133
Query: 125 HLELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSLGNLTNLQQLILFSNNL 184
+L L++ NQL + +N L LT L+ L L+ N L
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 185 SGSIPPSLEYPMLTTLNLDFNH 206
S+P + + LT+L + H
Sbjct: 194 K-SVPDGV-FDRLTSLQYIWLH 213
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 82 DLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIP 141
DLS +++F + S+ T+L L ++ + ++HL L++ N L GSI
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 142 PELGQXXXXXXXXXF-FNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTL 200
+ + +NH+ S L NL++L L +N L S+P + + LT+L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI-FDRLTSL 397
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 69 DFSFSSF-PHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLE 127
D S F L YLDLS+N+L NL +L + D I E G MS L+
Sbjct: 61 DISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALP--ICKEFGNMSQLK 118
Query: 128 LLHIDTNQLDGS 139
L + T L+ S
Sbjct: 119 FLGLSTTHLEKS 130
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMS---HLELL 129
+ P L LD+S+N L + L L LY G++ +PP GL++ LE L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP--GLLTPTPKLEKL 153
Query: 130 HIDTNQL 136
+ NQL
Sbjct: 154 SLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMS---HLELL 129
+ P L LD+S+N L + L L LY G++ +PP GL++ LE L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP--GLLTPTPKLEKL 153
Query: 130 HIDTNQL 136
+ NQL
Sbjct: 154 SLANNQL 160
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 66 TLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV-GLMS 124
+L D F +L YL L +N+L LTNLT L +Q +P V ++
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLT 181
Query: 125 HLELLHIDTNQLDGSIP 141
L+ L ++ NQL S+P
Sbjct: 182 QLKQLSLNDNQL-KSVP 197
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 67 LHDFS-FSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV-GLMS 124
LHD S +L YL L+ N+L LTNL L +Q +P V ++
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLT 133
Query: 125 HLELLHIDTNQLDGSIPPELGQXXXXXXXXXFFNHLNGSVPPSL-GNLTNLQQLILFSNN 183
+L L++ NQL S+P + N+ S+P + LT L+QL L N
Sbjct: 134 NLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 184 LSGSIPPSLEYPMLTTL 200
L S+P + + LT+L
Sbjct: 193 LK-SVPDGV-FDRLTSL 207
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 67 LHDF---SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTL----YFGGDQFSGNIPPE 119
LHD SFS P L YL L YN + P L+NL L F S P
Sbjct: 260 LHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPN 319
Query: 120 VG-----LMSHLELLHIDTNQL 136
+ + +LE L++D N +
Sbjct: 320 IDDFSFQWLKYLEYLNMDDNNI 341
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMS---HLELL 129
+ P L LD+S+N L + L L LY G++ +PP GL++ LE L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP--GLLTPTPKLEKL 153
Query: 130 HIDTNQL 136
+ NQL
Sbjct: 154 SLANNQL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMS---HLELL 129
+ P L LD+S+N L + L L LY G++ +PP GL++ LE L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP--GLLTPTPKLEKL 153
Query: 130 HIDTNQL 136
+ NQL
Sbjct: 154 SLANNQL 160
>pdb|3RZP|A Chain A, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RZP|B Chain B, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RZP|C Chain C, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RZP|D Chain D, Crystal Structure Of The C194a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq1
pdb|3RJ4|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae
pdb|3RJ4|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae
pdb|3UXV|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
pdb|3UXV|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
pdb|3UXV|C Chain C, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
pdb|3UXV|D Chain D, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq
Length = 290
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 11 WKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCN 48
+K L S+NQ+ SW T + +S CA ++ N
Sbjct: 101 FKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVN 138
>pdb|3S19|A Chain A, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3S19|B Chain B, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3S19|C Chain C, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3S19|D Chain D, Crystal Structure Of The R262l Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3UXJ|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
pdb|3UXJ|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
pdb|3UXJ|C Chain C, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
pdb|3UXJ|D Chain D, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
Quef From Vibrio Cholerae Complexed With Nadp And Preq0
Length = 290
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 11 WKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCN 48
+K L S+NQ+ SW T + +S CA ++ N
Sbjct: 101 FKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVN 138
>pdb|3BP1|A Chain A, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
pdb|3BP1|B Chain B, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
pdb|3BP1|C Chain C, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
pdb|3BP1|D Chain D, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
pdb|4IQI|A Chain A, Crystal Structure Of 7-cyano-7-deazaguanine Reductase,
Quef From Vibrio Cholerae O1 Biovar El Tor Complexed
With Cytosine
pdb|4IQI|B Chain B, Crystal Structure Of 7-cyano-7-deazaguanine Reductase,
Quef From Vibrio Cholerae O1 Biovar El Tor Complexed
With Cytosine
Length = 290
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 11 WKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCN 48
+K L S+NQ+ SW T + +S CA ++ N
Sbjct: 101 FKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVN 138
>pdb|3RZQ|A Chain A, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|3RZQ|B Chain B, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|4GHM|A Chain A, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
pdb|4GHM|B Chain B, Crystal Structure Of The H233a Mutant Of
7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
Cholerae Complexed With Preq0
Length = 290
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 11 WKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCN 48
+K L S+NQ+ SW T + +S CA ++ N
Sbjct: 101 FKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVN 138
>pdb|3VBM|A Chain A, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBM|C Chain C, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
pdb|3VBM|E Chain E, Crystal Structure Of The S84t Mutant Of Antd, An
N-Acyltransferase From Bacillus Cereus In Complex With
Dtdp And Coenzyme A
Length = 205
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 71 SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGN 115
+ S+ H+A Y G +N+T+ T +Y D FSGN
Sbjct: 72 TIGSYSHIAAYTALYGGEVGIEMYDFANITSRTIVYAAIDDFSGN 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,778,283
Number of Sequences: 62578
Number of extensions: 267176
Number of successful extensions: 597
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 123
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)