Query 046860
Match_columns 234
No_of_seqs 189 out of 2472
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.6E-30 5.7E-35 239.9 17.4 222 2-232 28-273 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.3E-23 5.1E-28 193.6 11.9 178 53-231 142-320 (968)
3 KOG0617 Ras suppressor protein 99.8 1.2E-21 2.7E-26 141.4 -5.4 161 50-217 32-194 (264)
4 KOG0617 Ras suppressor protein 99.8 5.4E-21 1.2E-25 138.1 -5.0 157 71-232 28-186 (264)
5 KOG4194 Membrane glycoprotein 99.8 1.3E-19 2.8E-24 152.3 2.1 177 52-229 174-351 (873)
6 KOG4194 Membrane glycoprotein 99.7 6E-19 1.3E-23 148.3 4.0 181 51-233 125-331 (873)
7 PLN03150 hypothetical protein; 99.7 1.7E-16 3.7E-21 140.6 12.1 147 2-161 371-528 (623)
8 KOG0444 Cytoskeletal regulator 99.7 1.4E-18 3E-23 147.5 -2.0 179 51-233 78-259 (1255)
9 KOG0444 Cytoskeletal regulator 99.7 1.6E-18 3.4E-23 147.2 -3.5 175 52-231 8-185 (1255)
10 KOG4237 Extracellular matrix p 99.6 1.9E-17 4.2E-22 133.4 -1.1 83 51-134 67-150 (498)
11 KOG0472 Leucine-rich repeat pr 99.6 2.6E-18 5.6E-23 138.8 -9.9 105 123-232 182-288 (565)
12 cd00116 LRR_RI Leucine-rich re 99.5 2.1E-16 4.7E-21 129.5 -2.9 183 50-233 80-292 (319)
13 KOG0472 Leucine-rich repeat pr 99.5 1.5E-16 3.3E-21 128.7 -3.7 186 41-232 352-541 (565)
14 PRK15370 E3 ubiquitin-protein 99.5 4.3E-14 9.4E-19 126.6 9.7 163 51-232 199-380 (754)
15 PRK15370 E3 ubiquitin-protein 99.5 6.9E-14 1.5E-18 125.3 10.1 161 52-232 179-359 (754)
16 PRK15387 E3 ubiquitin-protein 99.5 1.3E-13 2.9E-18 123.2 11.1 77 149-233 383-459 (788)
17 PLN03210 Resistant to P. syrin 99.5 5E-13 1.1E-17 126.3 14.9 79 52-133 635-713 (1153)
18 PLN03210 Resistant to P. syrin 99.5 6.6E-13 1.4E-17 125.5 15.0 106 51-160 611-716 (1153)
19 KOG0618 Serine/threonine phosp 99.5 1.3E-15 2.8E-20 134.2 -3.3 39 146-185 381-420 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.5 9.6E-16 2.1E-20 125.6 -4.0 182 51-233 51-264 (319)
21 KOG0618 Serine/threonine phosp 99.5 1.2E-15 2.5E-20 134.4 -3.8 172 52-230 288-487 (1081)
22 KOG0532 Leucine-rich repeat (L 99.4 2E-15 4.3E-20 126.9 -6.3 172 53-233 77-248 (722)
23 PRK15387 E3 ubiquitin-protein 99.4 2.6E-12 5.7E-17 115.0 12.3 137 53-209 203-356 (788)
24 KOG4237 Extracellular matrix p 99.4 1.8E-14 3.9E-19 116.5 -1.9 81 54-138 49-130 (498)
25 COG4886 Leucine-rich repeat (L 99.4 6.9E-13 1.5E-17 112.1 5.9 173 52-233 117-291 (394)
26 PLN03150 hypothetical protein; 99.3 6.4E-12 1.4E-16 111.7 7.4 105 126-230 420-526 (623)
27 PF14580 LRR_9: Leucine-rich r 99.2 3.3E-12 7.1E-17 95.0 2.7 126 71-202 14-147 (175)
28 COG4886 Leucine-rich repeat (L 99.2 8.1E-12 1.7E-16 105.6 4.2 171 55-233 97-269 (394)
29 PF14580 LRR_9: Leucine-rich r 99.2 1E-11 2.2E-16 92.4 3.7 103 53-161 21-126 (175)
30 KOG0532 Leucine-rich repeat (L 99.1 9E-13 1.9E-17 111.2 -5.5 169 55-232 54-224 (722)
31 KOG3207 Beta-tubulin folding c 99.1 1E-11 2.2E-16 101.9 -0.4 180 52-232 147-339 (505)
32 KOG1259 Nischarin, modulator o 99.1 9.5E-12 2.1E-16 98.0 -1.7 129 75-209 283-413 (490)
33 KOG3207 Beta-tubulin folding c 99.0 2E-11 4.3E-16 100.2 -1.2 183 51-233 121-315 (505)
34 PF13855 LRR_8: Leucine rich r 99.0 3.8E-10 8.2E-15 69.4 4.4 60 172-231 1-61 (61)
35 KOG1259 Nischarin, modulator o 99.0 3.1E-11 6.8E-16 95.1 -2.2 130 99-233 283-413 (490)
36 PF13855 LRR_8: Leucine rich r 99.0 7.8E-10 1.7E-14 68.0 4.1 59 77-135 2-60 (61)
37 KOG1909 Ran GTPase-activating 98.9 2.9E-11 6.3E-16 96.7 -4.7 182 51-232 92-311 (382)
38 PF08263 LRRNT_2: Leucine rich 98.8 6E-09 1.3E-13 59.1 3.6 42 2-48 2-43 (43)
39 KOG1909 Ran GTPase-activating 98.7 1.2E-09 2.5E-14 87.6 -1.9 182 50-232 29-283 (382)
40 KOG0531 Protein phosphatase 1, 98.7 3.9E-09 8.5E-14 89.9 0.1 171 53-232 74-268 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.6 1.2E-08 2.6E-13 93.4 1.6 179 52-233 546-731 (889)
42 KOG0531 Protein phosphatase 1, 98.6 6.4E-09 1.4E-13 88.5 -1.3 131 73-209 69-200 (414)
43 KOG1859 Leucine-rich repeat pr 98.6 9.3E-10 2E-14 95.9 -6.9 125 102-231 166-291 (1096)
44 KOG2982 Uncharacterized conser 98.4 4E-08 8.6E-13 77.7 -0.3 40 194-233 223-263 (418)
45 KOG4658 Apoptotic ATPase [Sign 98.4 2.3E-07 5.1E-12 85.2 3.6 105 77-182 546-652 (889)
46 KOG1859 Leucine-rich repeat pr 98.4 1.7E-08 3.6E-13 88.3 -4.0 157 69-233 102-268 (1096)
47 PF12799 LRR_4: Leucine Rich r 98.3 6E-07 1.3E-11 51.0 2.7 38 195-233 1-38 (44)
48 KOG4579 Leucine-rich repeat (L 98.3 1.6E-08 3.5E-13 71.1 -5.3 105 77-185 28-136 (177)
49 KOG1644 U2-associated snRNP A' 98.2 2E-06 4.3E-11 64.5 5.3 121 78-204 21-149 (233)
50 COG5238 RNA1 Ran GTPase-activa 98.2 8.4E-07 1.8E-11 69.5 2.2 179 50-232 29-255 (388)
51 KOG1644 U2-associated snRNP A' 98.1 6.9E-06 1.5E-10 61.6 5.9 125 53-182 21-150 (233)
52 PRK15386 type III secretion pr 98.1 1.2E-05 2.6E-10 67.4 8.0 131 51-205 52-187 (426)
53 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.7E-12 66.7 -3.4 114 47-165 23-139 (177)
54 PF12799 LRR_4: Leucine Rich r 98.1 2.9E-06 6.4E-11 48.1 2.7 35 126-161 3-37 (44)
55 COG5238 RNA1 Ran GTPase-activa 98.0 4.3E-07 9.4E-12 71.1 -2.0 182 51-233 92-317 (388)
56 KOG2120 SCF ubiquitin ligase, 97.9 3.1E-08 6.8E-13 78.2 -9.9 59 169-229 310-373 (419)
57 KOG2120 SCF ubiquitin ligase, 97.9 2.7E-08 5.8E-13 78.6 -10.7 154 77-230 186-349 (419)
58 KOG2982 Uncharacterized conser 97.8 1.2E-06 2.6E-11 69.5 -2.6 158 75-232 70-237 (418)
59 KOG3665 ZYG-1-like serine/thre 97.8 3.7E-06 8.1E-11 75.5 -0.5 131 100-232 122-263 (699)
60 PRK15386 type III secretion pr 97.6 0.00026 5.7E-09 59.5 7.9 123 39-183 61-188 (426)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00033 7.2E-09 49.3 7.5 83 96-181 8-90 (129)
62 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4E-10 71.1 0.6 34 122-157 171-204 (699)
63 KOG2739 Leucine-rich acidic nu 97.5 3.8E-05 8.2E-10 59.8 1.6 104 73-178 40-149 (260)
64 KOG2739 Leucine-rich acidic nu 97.5 4.3E-05 9.3E-10 59.5 1.8 105 92-201 35-149 (260)
65 PF13306 LRR_5: Leucine rich r 97.5 0.00055 1.2E-08 48.2 7.1 108 69-181 5-112 (129)
66 KOG2123 Uncharacterized conser 97.2 6.6E-06 1.4E-10 64.8 -6.4 102 47-154 15-123 (388)
67 KOG2123 Uncharacterized conser 96.8 2.9E-05 6.3E-10 61.2 -5.6 99 75-178 18-123 (388)
68 PF00560 LRR_1: Leucine Rich R 95.6 0.0059 1.3E-07 28.8 0.9 12 102-113 2-13 (22)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0057 1.2E-07 28.9 0.8 19 197-216 2-20 (22)
70 PF13504 LRR_7: Leucine rich r 94.4 0.033 7.2E-07 24.4 1.6 15 219-233 1-15 (17)
71 KOG0473 Leucine-rich repeat pr 94.2 0.00058 1.3E-08 52.8 -7.3 80 52-135 43-122 (326)
72 KOG4308 LRR-containing protein 94.0 3.3E-05 7.1E-10 66.7 -16.1 181 53-233 89-304 (478)
73 PF13516 LRR_6: Leucine Rich r 93.1 0.025 5.4E-07 27.2 -0.1 16 218-233 1-16 (24)
74 KOG0473 Leucine-rich repeat pr 92.9 0.0017 3.7E-08 50.2 -6.6 90 69-161 35-124 (326)
75 KOG3864 Uncharacterized conser 91.3 0.011 2.4E-07 44.8 -3.9 34 194-227 150-184 (221)
76 smart00368 LRR_RI Leucine rich 89.7 0.2 4.3E-06 25.1 1.1 15 219-233 2-16 (28)
77 smart00369 LRR_TYP Leucine-ric 89.4 0.29 6.3E-06 23.8 1.6 15 195-209 2-16 (26)
78 smart00370 LRR Leucine-rich re 89.4 0.29 6.3E-06 23.8 1.6 15 195-209 2-16 (26)
79 KOG4308 LRR-containing protein 89.3 0.00069 1.5E-08 58.6 -13.4 157 78-234 89-277 (478)
80 KOG1947 Leucine rich repeat pr 88.9 0.021 4.5E-07 49.4 -4.8 108 99-206 187-306 (482)
81 KOG1947 Leucine rich repeat pr 86.6 0.097 2.1E-06 45.2 -2.0 109 123-231 187-307 (482)
82 KOG3864 Uncharacterized conser 86.5 0.061 1.3E-06 40.9 -2.8 33 53-86 103-135 (221)
83 smart00365 LRR_SD22 Leucine-ri 84.0 1 2.2E-05 22.1 1.8 14 219-232 2-15 (26)
84 smart00367 LRR_CC Leucine-rich 80.0 1.3 2.8E-05 21.5 1.3 16 218-233 1-17 (26)
85 smart00364 LRR_BAC Leucine-ric 74.7 2 4.3E-05 21.1 1.1 13 101-113 3-15 (26)
86 KOG4341 F-box protein containi 72.6 2.1 4.6E-05 36.4 1.5 109 75-183 319-437 (483)
87 KOG3763 mRNA export factor TAP 69.5 1.5 3.2E-05 38.5 -0.1 11 172-182 244-254 (585)
88 KOG3763 mRNA export factor TAP 58.0 5.3 0.00011 35.2 1.2 62 170-233 216-284 (585)
89 KOG4341 F-box protein containi 57.4 5.4 0.00012 34.1 1.1 154 53-206 270-437 (483)
90 TIGR00864 PCC polycystin catio 22.3 58 0.0013 35.0 2.0 32 57-89 1-32 (2740)
91 TIGR00864 PCC polycystin catio 22.0 61 0.0013 34.8 2.1 32 106-137 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.6e-30 Score=239.90 Aligned_cols=222 Identities=32% Similarity=0.555 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCceeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEE
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYL 81 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L 81 (234)
+.|..||++||+.+. ++...+++| +. ..++|.|.|++|+...+|+.|+++++.+.+.+ +..+..+++|+.|
T Consensus 28 ~~~~~~l~~~~~~~~-~~~~~~~~w-~~------~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L 98 (968)
T PLN00113 28 AEELELLLSFKSSIN-DPLKYLSNW-NS------SADVCLWQGITCNNSSRVVSIDLSGKNISGKI-SSAIFRLPYIQTI 98 (968)
T ss_pred HHHHHHHHHHHHhCC-CCcccCCCC-CC------CCCCCcCcceecCCCCcEEEEEecCCCccccC-ChHHhCCCCCCEE
Confidence 478999999999995 555667899 44 66899999999987789999999999998887 7788889999999
Q ss_pred EccCCccccCCCccCC-CCCCCcEEEeecccccccC----------------------CccCcCCCCCcEEEcccCcCCC
Q 046860 82 DLSYNELFGTIPPQIS-NLTNLTTLYFGGDQFSGNI----------------------PPEVGLMSHLELLHIDTNQLDG 138 (234)
Q Consensus 82 ~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~----------------------p~~~~~l~~L~~L~l~~n~~~~ 138 (234)
++++|.+.+.+|..+. .+++|++|++++|.+++.+ |..+..+++|++|++++|.+.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 9999988777776543 6667777776666665443 3344444555555555555544
Q ss_pred CCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCC
Q 046860 139 SIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCR 217 (234)
Q Consensus 139 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~ 217 (234)
.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+. +++|++|++++|.+.+.+|..++.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 4555555555555555555555544555555555555555555555555555444 555555666555555555555555
Q ss_pred CCCcCEEeccCCccC
Q 046860 218 GSMCCRFSLASLVFL 232 (234)
Q Consensus 218 ~~~L~~L~l~~N~l~ 232 (234)
+++|+.|++++|.++
T Consensus 259 l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 259 LKNLQYLFLYQNKLS 273 (968)
T ss_pred CCCCCEEECcCCeee
Confidence 666666666665554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2.3e-23 Score=193.63 Aligned_cols=178 Identities=39% Similarity=0.584 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHID 132 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 132 (234)
++.|++++|.+.+.+ +..+..+++|+.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 142 L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 142 LETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCEEECcCCcccccC-ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 444444444444444 4445555555555555555554555555555555555555555554455555555555555555
Q ss_pred cCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccC
Q 046860 133 TNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYL 211 (234)
Q Consensus 133 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~ 211 (234)
+|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+. +++|+.|++++|.+.+.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 5555555555555555555555555555545555555555555555555555544444443 445555555555554444
Q ss_pred CccCCCCCCcCEEeccCCcc
Q 046860 212 PHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 212 ~~~~~~~~~L~~L~l~~N~l 231 (234)
|..+..+++|+.|++++|.+
T Consensus 301 p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ChhHcCCCCCcEEECCCCcc
Confidence 44444444555555544444
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=1.2e-21 Score=141.43 Aligned_cols=161 Identities=29% Similarity=0.453 Sum_probs=145.2
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
+..++.|.+++|.++ .+ ++.++.+.+|+.|++.+|+++ .+|..++.+++|+.|++..|++. .+|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 456899999999997 44 778899999999999999998 78999999999999999999998 899999999999999
Q ss_pred EcccCcCC-CCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcc
Q 046860 130 HIDTNQLD-GSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHF 207 (234)
Q Consensus 130 ~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l 207 (234)
|+.+|.+. ..+|..|..+..|+-|++++|.+. .+|..++++.+|+.|.+..|.+- .+|..++ +++|+.|++++|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99999886 478999999999999999999998 88999999999999999999988 6788888 99999999999999
Q ss_pred cccCCccCCC
Q 046860 208 TSYLPHNVCR 217 (234)
Q Consensus 208 ~~~~~~~~~~ 217 (234)
+..+| .++.
T Consensus 186 ~vlpp-el~~ 194 (264)
T KOG0617|consen 186 TVLPP-ELAN 194 (264)
T ss_pred eecCh-hhhh
Confidence 87544 3554
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=5.4e-21 Score=138.15 Aligned_cols=157 Identities=27% Similarity=0.478 Sum_probs=143.4
Q ss_pred cCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 046860 71 SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSL 150 (234)
Q Consensus 71 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L 150 (234)
.+-.+.+++.|.+++|.++ .+|..+..+.+|+.|++.+|+++ .+|.++..+++|+.|.++.|++. .+|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4456778899999999998 77888999999999999999999 89999999999999999999998 899999999999
Q ss_pred cEEEcccCcCcc-CCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccC
Q 046860 151 VVLSLFFNHLNG-SVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLAS 228 (234)
Q Consensus 151 ~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 228 (234)
+.|+++.|.+.. .+|..|..+..|+-|++++|.+. .+|..++ +++|+.|.+..|.+-. +|..++.+.+|+.|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccc
Confidence 999999998863 68888989999999999999998 6677777 9999999999999876 888899999999999999
Q ss_pred CccC
Q 046860 229 LVFL 232 (234)
Q Consensus 229 N~l~ 232 (234)
|.++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 9876
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-19 Score=152.30 Aligned_cols=177 Identities=20% Similarity=0.107 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
+++.|+|++|.++..- ...|..+.+|..|.++.|.++...+..|..+++|+.|++..|+|...-.-.|.++++|+.|.+
T Consensus 174 ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 4666666666665433 555666666666666666665333444555666666666666655222233445555555555
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccccc
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
..|.+...-...|..+.++++|+|..|+++..-...+.++..|++|++++|.|..+-++.+. .++|+.|++++|.|+..
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 55555433333444455555555555544422222333444444444444444433333333 33444444444444443
Q ss_pred CCccCCCCCCcCEEeccCC
Q 046860 211 LPHNVCRGSMCCRFSLASL 229 (234)
Q Consensus 211 ~~~~~~~~~~L~~L~l~~N 229 (234)
.+..|..+.+|..|.|+.|
T Consensus 333 ~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ChhHHHHHHHhhhhccccc
Confidence 3333333333333333333
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=6e-19 Score=148.35 Aligned_cols=181 Identities=19% Similarity=0.208 Sum_probs=121.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
++++.|+|.+|.++..- .+.+..++.|+.||++.|.|....-.+|..-.++++|++++|+|+..-...|..+.+|.+|.
T Consensus 125 ghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 46888888888877544 56666667777777777766533334455556666666666666644444556666666666
Q ss_pred cccCcCCCCCCc-cccCCCCCcEEEcccCcCc------------------------cCCCccCCCCCCCceEEcccCccc
Q 046860 131 IDTNQLDGSIPP-ELGQLSSLVVLSLFFNHLN------------------------GSVPPSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 131 l~~n~~~~~~p~-~l~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~~~~L~~L~L~~n~l~ 185 (234)
+++|+++ .+|. .|..++.|+.|+|..|++. ..-...|..+.++++|+|..|+++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 6666666 3433 3444666666666555543 222345566777888888888877
Q ss_pred ccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 186 GSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 186 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
..-...+. ++.|+.|++++|.|....+....-+++|+.|||++|+|+.
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 55444444 8889999999999888777777788899999999998874
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.69 E-value=1.7e-16 Score=140.57 Aligned_cols=147 Identities=31% Similarity=0.511 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCc-----eeeeEEeCCC-----CCEEEEEcCCCCcccccCCCc
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPC-----AWSGISCNDA-----GRVIKISLPKIGLKGTLHDFS 71 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c-----~~~g~~~~~~-----~~~~~L~l~~~~l~~~~~~~~ 71 (234)
.+|..||+.+|..+.... ..+| + .++| .|.|+.|... ..++.|+|+++.+.|.+ +..
T Consensus 371 ~~~~~aL~~~k~~~~~~~---~~~W-~--------g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i-p~~ 437 (623)
T PLN03150 371 LEEVSALQTLKSSLGLPL---RFGW-N--------GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI-PND 437 (623)
T ss_pred chHHHHHHHHHHhcCCcc---cCCC-C--------CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC-CHH
Confidence 468999999999985322 2489 2 2445 7999999532 24899999999999998 888
Q ss_pred CCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCC-CCC
Q 046860 72 FSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQL-SSL 150 (234)
Q Consensus 72 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l-~~L 150 (234)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+... .++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887653 467
Q ss_pred cEEEcccCcCc
Q 046860 151 VVLSLFFNHLN 161 (234)
Q Consensus 151 ~~L~l~~n~l~ 161 (234)
..+++.+|...
T Consensus 518 ~~l~~~~N~~l 528 (623)
T PLN03150 518 ASFNFTDNAGL 528 (623)
T ss_pred ceEEecCCccc
Confidence 78888888654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1.4e-18 Score=147.53 Aligned_cols=179 Identities=24% Similarity=0.315 Sum_probs=126.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCcc-CcCCCCCcEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPE-VGLMSHLELL 129 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L 129 (234)
++++++++++|++.....|..+-++..|..||+++|+++ ..|..+...+++-+|++++|+|. .+|.. +-+++-|-.|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 346666777776653322666667777777777777776 66766767777777777777777 55553 4556667777
Q ss_pred EcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccc-ccCCCCCC-CCCCCeEecccCcc
Q 046860 130 HIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLS-GSIPPSLE-YPMLTTLNLDFNHF 207 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-~~~L~~L~l~~n~l 207 (234)
++++|++. .+|+.+..+..|++|.|++|.+.......+-.+.+|+.|.+++.+-+ .-+|..+. +.+|..++++.|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 77777777 67777777777777777777765433334445666777777776543 23565665 88999999999998
Q ss_pred cccCCccCCCCCCcCEEeccCCccCC
Q 046860 208 TSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 208 ~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.. +|+++..+++|+.|+||+|+|++
T Consensus 235 p~-vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 235 PI-VPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred Cc-chHHHhhhhhhheeccCcCceee
Confidence 65 88889999999999999999875
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=1.6e-18 Score=147.24 Aligned_cols=175 Identities=26% Similarity=0.358 Sum_probs=152.6
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
-|+.+|+++|.++|..-|..+..++.++.|-+...++. .+|+.+..+.+|++|.+..|+++ .+...+..++.|+.+++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence 38899999999996554888899999999999998887 78999999999999999999998 55567888999999999
Q ss_pred ccCcCCC-CCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC--CCCCCeEecccCccc
Q 046860 132 DTNQLDG-SIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE--YPMLTTLNLDFNHFT 208 (234)
Q Consensus 132 ~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l~~n~l~ 208 (234)
..|.+.. -+|..+..+..|.+|+|++|+++ +.|..+...+++..|+|++|+|. .+|..+. ++.|-.|++++|++.
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 9998753 56888889999999999999999 88999999999999999999998 4565444 888999999999998
Q ss_pred ccCCccCCCCCCcCEEeccCCcc
Q 046860 209 SYLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~N~l 231 (234)
. +|.-+.++..|++|+|++|.+
T Consensus 164 ~-LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 164 M-LPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred h-cCHHHHHHhhhhhhhcCCChh
Confidence 7 454589999999999999976
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.63 E-value=1.9e-17 Score=133.40 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeec-ccccccCCccCcCCCCCcEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGG-DQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L 129 (234)
...+.|+|..|.++. +|+.+|..++.|++||+++|.|+.+.|.+|.+++.|..|-+.+ |+|++.....|.++.+++-|
T Consensus 67 ~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 468999999999984 5599999999999999999999988899999999988887766 88884333345554444444
Q ss_pred EcccC
Q 046860 130 HIDTN 134 (234)
Q Consensus 130 ~l~~n 134 (234)
.+.-|
T Consensus 146 llNan 150 (498)
T KOG4237|consen 146 LLNAN 150 (498)
T ss_pred hcChh
Confidence 33333
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=2.6e-18 Score=138.82 Aligned_cols=105 Identities=28% Similarity=0.409 Sum_probs=47.6
Q ss_pred CCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC--CCCCCeE
Q 046860 123 MSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE--YPMLTTL 200 (234)
Q Consensus 123 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L 200 (234)
++.|++++...|-+. .+|+.++.+.+|..|++..|++. .+| .|..+..|++++++.|.+. .+|.... ++.+..|
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence 444455555444444 45555555555555555555554 333 3444444444444444444 2222222 4444444
Q ss_pred ecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 201 NLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 201 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
|+..|++.. +|..++.+.+|.+||+++|.|+
T Consensus 258 DLRdNklke-~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 258 DLRDNKLKE-VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred ecccccccc-CchHHHHhhhhhhhcccCCccc
Confidence 444444433 3444444444444444444443
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=2.1e-16 Score=129.49 Aligned_cols=183 Identities=22% Similarity=0.243 Sum_probs=129.6
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCC---CCCEEEccCCcccc----CCCccCCCC-CCCcEEEeecccccc----cCC
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFP---HLAYLDLSYNELFG----TIPPQISNL-TNLTTLYFGGDQFSG----NIP 117 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~---~L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~----~~p 117 (234)
..+++.|+++++.+.+.. +..+..+. +|+.|++++|.+.. .+...+..+ ++|+.|++++|.+++ .++
T Consensus 80 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 457999999999887544 33444444 49999999988762 222344566 889999999998873 233
Q ss_pred ccCcCCCCCcEEEcccCcCCCC----CCccccCCCCCcEEEcccCcCccC----CCccCCCCCCCceEEcccCcccccCC
Q 046860 118 PEVGLMSHLELLHIDTNQLDGS----IPPELGQLSSLVVLSLFFNHLNGS----VPPSLGNLTNLQQLILFSNNLSGSIP 189 (234)
Q Consensus 118 ~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~ 189 (234)
..+..+.+|++|++++|.+++. ++..+..+++|+.|++++|.+.+. +...+..+++|++|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 3456678899999999988742 233445567999999999988632 33456677899999999998874222
Q ss_pred CCCC------CCCCCeEecccCcccc----cCCccCCCCCCcCEEeccCCccCC
Q 046860 190 PSLE------YPMLTTLNLDFNHFTS----YLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 190 ~~~~------~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
..+. .+.|+.|++++|.+++ .++..+..+++|+++++++|.+++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 1111 3789999999999873 233445566899999999999875
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=1.5e-16 Score=128.73 Aligned_cols=186 Identities=24% Similarity=0.332 Sum_probs=144.0
Q ss_pred eeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCC--CCCCCEEEccCCccccCCCccCCCCCCCcE-EEeecccccccCC
Q 046860 41 AWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSS--FPHLAYLDLSYNELFGTIPPQISNLTNLTT-LYFGGDQFSGNIP 117 (234)
Q Consensus 41 ~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~p 117 (234)
.|.-+........+.|++++-.++... .+.|.. -.-+..++++.|++. .+|..+..+..+.+ +.+++|.+. ..|
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VP-dEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~ 428 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVP-DEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVP 428 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCC-HHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cch
Confidence 344443334445788888888887432 333332 234778899999987 77876665554443 556666665 777
Q ss_pred ccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCC
Q 046860 118 PEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPM 196 (234)
Q Consensus 118 ~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~ 196 (234)
..++.+++|..|++++|.+. .+|..++.+..|++++++.|+|. .+|..+..+..++.+..++|++....++.+. +.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 78889999999999999888 88999999999999999999988 8888887777788887888999877776566 889
Q ss_pred CCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 197 LTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 197 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
|.+||+.+|.+.. +|..+++|.+|++|++.+|.|.
T Consensus 507 L~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 9999999999987 6667999999999999999885
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=4.3e-14 Score=126.60 Aligned_cols=163 Identities=22% Similarity=0.345 Sum_probs=91.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
..++.|++++|.++. + +..+ ..+|+.|++++|.++ .+|..+. +.|+.|++++|.+. .+|..+. .+|++|+
T Consensus 199 ~~L~~L~Ls~N~Lts-L-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELKS-L-PENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCCc-C-Chhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 357888888888773 3 3222 246777777777776 4554432 35666666666666 4554432 3566666
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCC-------------------CCCCCceEEcccCcccccCCCC
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLG-------------------NLTNLQQLILFSNNLSGSIPPS 191 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~~~~L~~L~L~~n~l~~~~~~~ 191 (234)
+++|+++ .+|..+. .+|+.|++++|.++ .+|..+. ..++|+.|.+++|.+++ +|..
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~ 343 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPAS 343 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChh
Confidence 6666665 4555443 35666666666555 2332211 11345555555555553 3322
Q ss_pred CCCCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 192 LEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 192 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+ .++|+.|++++|.++. +|..+ .+.|+.|+|++|+|+
T Consensus 344 l-~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 344 L-PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred h-cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCC
Confidence 2 2566677777776654 44433 246677777777664
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=6.9e-14 Score=125.34 Aligned_cols=161 Identities=25% Similarity=0.427 Sum_probs=121.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
+...|++++++++. + |..+ .++++.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lts-L-P~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTT-I-PACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCc-C-Cccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 57899999999874 4 4333 357999999999998 5666553 58999999999998 6676543 47999999
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC------------------
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE------------------ 193 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~------------------ 193 (234)
++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCc
Confidence 999998 7787764 58999999999998 5776554 589999999999884 332211
Q ss_pred --CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 194 --YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 194 --~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
.++|+.|++++|.+++ +|..+. ++|+.|++++|+|+
T Consensus 322 ~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 322 TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 2456666666666665 444332 67888888888876
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.3e-13 Score=123.19 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=55.3
Q ss_pred CCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEeccC
Q 046860 149 SLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLAS 228 (234)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 228 (234)
+|+.|++++|.+. .+|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.++. +|..++.+++|+.|+|++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEG 454 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCcccc-cChHHhhccCCCeEECCC
Confidence 4566666666666 34432 2467777777777763 4432 3467788888888874 788889999999999999
Q ss_pred CccCC
Q 046860 229 LVFLD 233 (234)
Q Consensus 229 N~l~~ 233 (234)
|+|++
T Consensus 455 N~Ls~ 459 (788)
T PRK15387 455 NPLSE 459 (788)
T ss_pred CCCCc
Confidence 99985
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=5e-13 Score=126.28 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
+++.|+|+++.....+ + .+..+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+ .+++|++|++
T Consensus 635 ~Lk~L~Ls~~~~l~~i-p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEI-P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCEEECCCCCCcCcC-C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 4555555544332233 2 24445555555555554333455555555555555555543222344332 3334444444
Q ss_pred cc
Q 046860 132 DT 133 (234)
Q Consensus 132 ~~ 133 (234)
++
T Consensus 712 sg 713 (1153)
T PLN03210 712 SG 713 (1153)
T ss_pred CC
Confidence 33
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=6.6e-13 Score=125.45 Aligned_cols=106 Identities=24% Similarity=0.246 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|++.++.+. .+ +..+..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KL-WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-cc-ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 35667777777665 23 4456677778888887765443555 366778888888887765557777777888888888
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcC
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHL 160 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l 160 (234)
+++|.....+|..+ ++++|+.|++++|..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence 88765444666554 566666666666543
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-15 Score=134.16 Aligned_cols=39 Identities=41% Similarity=0.597 Sum_probs=22.3
Q ss_pred CCCCCcEEEcccCcCccCCCc-cCCCCCCCceEEcccCccc
Q 046860 146 QLSSLVVLSLFFNHLNGSVPP-SLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 146 ~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~ 185 (234)
+.++|+.|+|++|++. .+|+ .+.++..|++|+|++|.++
T Consensus 381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence 3456666666666665 3333 3455566666666666555
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=9.6e-16 Score=125.63 Aligned_cols=182 Identities=22% Similarity=0.175 Sum_probs=128.4
Q ss_pred CCEEEEEcCCCCccc------ccCCCcCCCCCCCCEEEccCCccccCCCccCCCC---CCCcEEEeecccccc----cCC
Q 046860 51 GRVIKISLPKIGLKG------TLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNL---TNLTTLYFGGDQFSG----NIP 117 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~----~~p 117 (234)
..++.++++++.+.+ .+ +..+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+.+ .+.
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSL-LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCceEEeccccccCCcchHHHHH-HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 458888888887652 12 3456678899999999998864444444444 449999999998872 222
Q ss_pred ccCcCC-CCCcEEEcccCcCCCC----CCccccCCCCCcEEEcccCcCccC----CCccCCCCCCCceEEcccCcccccC
Q 046860 118 PEVGLM-SHLELLHIDTNQLDGS----IPPELGQLSSLVVLSLFFNHLNGS----VPPSLGNLTNLQQLILFSNNLSGSI 188 (234)
Q Consensus 118 ~~~~~l-~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~ 188 (234)
..+..+ ++|+.|++++|.+++. ++..+..++.|++|++++|.+.+. ++..+...++|++|++++|.+++..
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 344556 8899999999988742 233456678899999999988742 3334455679999999999886332
Q ss_pred ----CCCCC-CCCCCeEecccCcccccCCccCC-----CCCCcCEEeccCCccCC
Q 046860 189 ----PPSLE-YPMLTTLNLDFNHFTSYLPHNVC-----RGSMCCRFSLASLVFLD 233 (234)
Q Consensus 189 ----~~~~~-~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~N~l~~ 233 (234)
...+. +++|+.|++++|.+++.....+. ..+.|++|++++|.+++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 22333 78899999999998763332222 24789999999999874
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-15 Score=134.38 Aligned_cols=172 Identities=27% Similarity=0.414 Sum_probs=132.0
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccC--------------------------CCCCCCcEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQI--------------------------SNLTNLTTL 105 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------~~l~~L~~L 105 (234)
.++.+++..|.+. .+ +.....+++|+.|++..|.+. ..|+.+ ...+.|+.|
T Consensus 288 ~L~~l~~~~nel~-yi-p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 288 SLVSLSAAYNELE-YI-PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL 364 (1081)
T ss_pred hHHHHHhhhhhhh-hC-CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH
Confidence 4566666666664 34 555566777777777776664 333221 123457788
Q ss_pred EeecccccccCCccCcCCCCCcEEEcccCcCCCCCCc-cccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcc
Q 046860 106 YFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPP-ELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNL 184 (234)
Q Consensus 106 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 184 (234)
++.+|.+++...+.+.++++|+.|++++|++. .+|. .+.++..|++|++++|+++ .+|..+..++.|++|...+|.+
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce
Confidence 99999998777777889999999999999998 6665 4688999999999999999 7889999999999999999999
Q ss_pred cccCCCCCCCCCCCeEecccCccccc-CCccCCCCCCcCEEeccCCc
Q 046860 185 SGSIPPSLEYPMLTTLNLDFNHFTSY-LPHNVCRGSMCCRFSLASLV 230 (234)
Q Consensus 185 ~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~N~ 230 (234)
. .+|....+++|+.+|++.|.++.. +|+.. ..++|++||+++|.
T Consensus 443 ~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 443 L-SFPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred e-echhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 8 667554599999999999998763 33322 23899999999996
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=2e-15 Score=126.91 Aligned_cols=172 Identities=28% Similarity=0.377 Sum_probs=140.7
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHID 132 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 132 (234)
.+..|++.|.+. .+ +..+..|..|+.+.+..|-+. .+|.++..+..|.+++|+.|++. .+|..++.++ |+.|.++
T Consensus 77 t~~aDlsrNR~~-el-p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-EL-PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cC-chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 456677777765 34 666666777777788877776 77888888999999999999998 7888777666 7888999
Q ss_pred cCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCC
Q 046860 133 TNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLP 212 (234)
Q Consensus 133 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 212 (234)
+|+++ .+|..++.+.+|..++.+.|.+. .+|+.+..+.+|+.|.+..|++. .+|..+..-.|..||++.|++.. +|
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis~-iP 227 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKISY-LP 227 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCceee-cc
Confidence 99988 88888888888999999999988 78888888899999999999888 45555553357899999999976 78
Q ss_pred ccCCCCCCcCEEeccCCccCC
Q 046860 213 HNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 213 ~~~~~~~~L~~L~l~~N~l~~ 233 (234)
-.|.+|..|+.|-|.+|.++.
T Consensus 228 v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhhheeeeeccCCCCC
Confidence 889999999999999998874
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=2.6e-12 Score=115.03 Aligned_cols=137 Identities=27% Similarity=0.332 Sum_probs=70.9
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHID 132 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 132 (234)
-..|+++++.++ .+ |..+. .+|+.|++.+|.++ .+|. ..++|++|++++|+++ .+|.. .++|++|++.
T Consensus 203 ~~~LdLs~~~Lt-sL-P~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cC-Ccchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 456677777766 34 33332 35666777776666 3443 2456667777777666 34432 2344455555
Q ss_pred cCcCCCCCCcccc-----------------CCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCC
Q 046860 133 TNQLDGSIPPELG-----------------QLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYP 195 (234)
Q Consensus 133 ~n~~~~~~p~~l~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 195 (234)
+|.+. .+|..+. ..++|+.|++++|.++ .+|... .+|+.|.+++|.+++ +|.. ..
T Consensus 271 ~N~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~~-LP~l--p~ 342 (788)
T PRK15387 271 SNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS-LPTL--PS 342 (788)
T ss_pred CCchh-hhhhchhhcCEEECcCCccccccccccccceeECCCCccc-cCCCCc---ccccccccccCcccc-cccc--cc
Confidence 55444 2332110 1244555666665555 233211 234455555555542 2321 24
Q ss_pred CCCeEecccCcccc
Q 046860 196 MLTTLNLDFNHFTS 209 (234)
Q Consensus 196 ~L~~L~l~~n~l~~ 209 (234)
+|+.|++++|+|+.
T Consensus 343 ~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 343 GLQELSVSDNQLAS 356 (788)
T ss_pred ccceEecCCCccCC
Confidence 67788888887775
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=1.8e-14 Score=116.46 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=64.1
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
..++-++-+++. + |..+ -+....+++..|+|+...+.+|..+++|+.|+|++|.|+.+.|..|.++.++..|.+.+
T Consensus 49 ~~VdCr~~GL~e-V-P~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 49 GIVDCRGKGLTE-V-PANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred ceEEccCCCccc-C-cccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 455666666663 2 2222 24567899999999977778999999999999999999988899999999987777655
Q ss_pred -CcCCC
Q 046860 134 -NQLDG 138 (234)
Q Consensus 134 -n~~~~ 138 (234)
|+|+.
T Consensus 125 ~NkI~~ 130 (498)
T KOG4237|consen 125 NNKITD 130 (498)
T ss_pred CCchhh
Confidence 89984
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=6.9e-13 Score=112.09 Aligned_cols=173 Identities=27% Similarity=0.378 Sum_probs=134.4
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCC-CCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFP-HLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.++.+++.++.++ .+ +.....+. +|+.|++++|.+. .+|..+..++.|+.|++++|++. .+|......+.|+.|+
T Consensus 117 ~l~~L~l~~n~i~-~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNNIT-DI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcccc-cC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 5788888888876 34 44555553 8899999999887 55566788899999999999988 6666555788888999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|++. .+|........|+++.+++|... ..+..+.++.++..+.+.+|.+.. ++..+. ++.+++|++++|.++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccc
Confidence 9999888 67776555566888999988644 456677888888888888888873 345555 7789999999999987
Q ss_pred cCCccCCCCCCcCEEeccCCccCC
Q 046860 210 YLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
. +. ++....++.|++++|.+++
T Consensus 270 i-~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 270 I-SS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred c-cc-ccccCccCEEeccCccccc
Confidence 4 33 8889999999999987753
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.29 E-value=6.4e-12 Score=111.68 Aligned_cols=105 Identities=32% Similarity=0.486 Sum_probs=50.5
Q ss_pred CcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEeccc
Q 046860 126 LELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDF 204 (234)
Q Consensus 126 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~ 204 (234)
++.|++.+|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+. +++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34444555555444444444555555555555555444444444555555555555555544444444 44555555555
Q ss_pred CcccccCCccCCC-CCCcCEEeccCCc
Q 046860 205 NHFTSYLPHNVCR-GSMCCRFSLASLV 230 (234)
Q Consensus 205 n~l~~~~~~~~~~-~~~L~~L~l~~N~ 230 (234)
|.+++.+|..+.. ..++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 5555444444432 2233444444443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=3.3e-12 Score=95.00 Aligned_cols=126 Identities=23% Similarity=0.280 Sum_probs=44.3
Q ss_pred cCCCCCCCCEEEccCCccccCCCccCC-CCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccc-cCCC
Q 046860 71 SFSSFPHLAYLDLSYNELFGTIPPQIS-NLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPEL-GQLS 148 (234)
Q Consensus 71 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~ 148 (234)
.+.+...+++|++++|.|+. +. .+. .+.+|+.|++++|.++ .+. .+..++.|++|++++|.++ .+...+ ..++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred cccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 34445567888888888873 32 344 4678888888888887 333 4667888888888888888 444444 3578
Q ss_pred CCcEEEcccCcCccC-CCccCCCCCCCceEEcccCcccccCCCCC----C-CCCCCeEec
Q 046860 149 SLVVLSLFFNHLNGS-VPPSLGNLTNLQQLILFSNNLSGSIPPSL----E-YPMLTTLNL 202 (234)
Q Consensus 149 ~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~-~~~L~~L~l 202 (234)
+|++|++++|.+... .-..+..+++|+.|++.+|.++.. +..- . +|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 888888888888632 123556778888888888888733 3211 1 677777763
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=8.1e-12 Score=105.61 Aligned_cols=171 Identities=26% Similarity=0.373 Sum_probs=134.5
Q ss_pred EEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCC-CCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 55 KISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLT-NLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
.+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..++.|+.|++.+
T Consensus 97 ~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN--ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC--chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 356666655322 234555678899999999988 5666666674 9999999999998 6666788999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCC
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLP 212 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 212 (234)
|.+. .+|...+.++.|+.+++++|.+. .+|..+.....|+++.+++|.+. ..+..+. +.++..+.+.+|++.. .+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence 9999 67776667899999999999998 77776666677999999999644 3344444 7888888899998866 36
Q ss_pred ccCCCCCCcCEEeccCCccCC
Q 046860 213 HNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 213 ~~~~~~~~L~~L~l~~N~l~~ 233 (234)
..++.++.++.|++++|.+++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred chhccccccceeccccccccc
Confidence 678899999999999999875
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1e-11 Score=92.35 Aligned_cols=103 Identities=23% Similarity=0.298 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcccccCCCcCC-CCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccC-cCCCCCcEEE
Q 046860 53 VIKISLPKIGLKGTLHDFSFS-SFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEV-GLMSHLELLH 130 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ 130 (234)
.+.|+|+++.++. + ..++ .+.+|+.|++++|.++. +. .+..++.|+.|++++|+++ .+++.+ ..+++|++|+
T Consensus 21 ~~~L~L~~n~I~~-I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 21 LRELNLRGNQIST-I--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-c--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 4455555555542 1 1222 34455555555555542 21 2444555555555555554 222222 2345555555
Q ss_pred cccCcCCCC-CCccccCCCCCcEEEcccCcCc
Q 046860 131 IDTNQLDGS-IPPELGQLSSLVVLSLFFNHLN 161 (234)
Q Consensus 131 l~~n~~~~~-~p~~l~~l~~L~~L~l~~n~l~ 161 (234)
+++|+|... .-..+..+++|+.|++.+|.++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555555421 1122344555555555555554
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=9e-13 Score=111.21 Aligned_cols=169 Identities=26% Similarity=0.383 Sum_probs=137.4
Q ss_pred EEEcCCCCcccccCCCcC-CCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 55 KISLPKIGLKGTLHDFSF-SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
.+.|++-.+.... .... -.+..-...|++.|.+. .+|..+..+-.|+.+.++.|.+. .+|..++.+..|.+++++.
T Consensus 54 ~l~Ls~rrlk~fp-r~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFP-RGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCC-Cccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3455555554322 2222 23445566789999987 78888888999999999999998 8899999999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCC
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLP 212 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 212 (234)
|+++ .+|..++.++ |+.+-+++|+++ .+|..++..++|..|+.+.|.+. .+|..++ +.+|+.|.+..|++.. +|
T Consensus 131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp 205 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LP 205 (722)
T ss_pred chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CC
Confidence 9999 8888887654 899999999999 88999998899999999999998 4555555 9999999999999987 66
Q ss_pred ccCCCCCCcCEEeccCCccC
Q 046860 213 HNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 213 ~~~~~~~~L~~L~l~~N~l~ 232 (234)
+.++.+ .|.+||+++|+++
T Consensus 206 ~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 206 EELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred HHHhCC-ceeeeecccCcee
Confidence 667754 5788999999985
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1e-11 Score=101.90 Aligned_cols=180 Identities=21% Similarity=0.171 Sum_probs=90.4
Q ss_pred CEEEEEcCCCCcccccC-CCcCCCCCCCCEEEccCCccccCCCcc-CCCCCCCcEEEeecccccccC-CccCcCCCCCcE
Q 046860 52 RVIKISLPKIGLKGTLH-DFSFSSFPHLAYLDLSYNELFGTIPPQ-ISNLTNLTTLYFGGDQFSGNI-PPEVGLMSHLEL 128 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~ 128 (234)
+++.|||+.|-+..--+ ......|++|+.|+++.|.+.-..... -..+++|+.|.++.|.++..- -..+..+++|..
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~ 226 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV 226 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence 45666666655442110 122344566666666665543111111 123456666666666655211 111234566666
Q ss_pred EEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCC--ccCCCCCCCceEEcccCccccc-CCCC-----CC-CCCCCe
Q 046860 129 LHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVP--PSLGNLTNLQQLILFSNNLSGS-IPPS-----LE-YPMLTT 199 (234)
Q Consensus 129 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~~-~~~~-----~~-~~~L~~ 199 (234)
|++..|..-........-+..|++|+|++|.+- .++ ...+.++.|+.|+++.+.+... .|+. .. +++|++
T Consensus 227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 227 LYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred hhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 666666321121122223456677777776665 233 3455666777777777766533 1222 11 567777
Q ss_pred EecccCcccccCC-ccCCCCCCcCEEeccCCccC
Q 046860 200 LNLDFNHFTSYLP-HNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 200 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~ 232 (234)
|++..|.+..+.. ..+..+++|++|.+..|.|+
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eecccCccccccccchhhccchhhhhhccccccc
Confidence 7777777655321 23445566666666666554
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=9.5e-12 Score=97.97 Aligned_cols=129 Identities=24% Similarity=0.274 Sum_probs=60.9
Q ss_pred CCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEE
Q 046860 75 FPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLS 154 (234)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 154 (234)
+..|+++|+++|.|+ .+.++..-.|.++.|+++.|++. .+ ..+..+++|+.||+++|.++ .+..+-.++.++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 344555555555554 34444444555555555555554 22 12444555555555555554 3333334455555555
Q ss_pred cccCcCccCCCccCCCCCCCceEEcccCcccccCC-CCCC-CCCCCeEecccCcccc
Q 046860 155 LFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIP-PSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 155 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~ 209 (234)
++.|.+. . .+.+.++-+|..|++.+|+|..... ..++ +|-|+++.+.+|.+.+
T Consensus 359 La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 5555544 1 1334444455555555555541111 1222 4555555555555544
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2e-11 Score=100.19 Aligned_cols=183 Identities=24% Similarity=0.171 Sum_probs=128.3
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccC--CCccCCCCCCCcEEEeecccccccCCcc-CcCCCCCc
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGT--IPPQISNLTNLTTLYFGGDQFSGNIPPE-VGLMSHLE 127 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~ 127 (234)
.+++.+.|++..+...........+++++.||++.|-+..- +..-...+|+|+.|+++.|++....... -..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 36888888888865221013456689999999999876521 2223467899999999999987322221 23578899
Q ss_pred EEEcccCcCCCCCCc-cccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCC-CCCC-CCCCCeEeccc
Q 046860 128 LLHIDTNQLDGSIPP-ELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIP-PSLE-YPMLTTLNLDF 204 (234)
Q Consensus 128 ~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~ 204 (234)
.|.++.|+++...-. .+..+|+|+.|++..|...............|+.|+|++|++....- ...+ ++.|..|.++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 999999998853222 23467999999999995322322334456789999999999874321 2223 89999999999
Q ss_pred Cccccc-CCcc-----CCCCCCcCEEeccCCccCC
Q 046860 205 NHFTSY-LPHN-----VCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 205 n~l~~~-~~~~-----~~~~~~L~~L~l~~N~l~~ 233 (234)
+.+... .|.. ...+++|++|++..|+|.+
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 998763 3322 2468999999999999854
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=3.8e-10 Score=69.42 Aligned_cols=60 Identities=30% Similarity=0.325 Sum_probs=47.5
Q ss_pred CCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCcc
Q 046860 172 TNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 172 ~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l 231 (234)
++|++|++++|.++...+..+. +++|++|++++|.++...+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888866656666 88888888888888877777788888888888888875
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=3.1e-11 Score=95.09 Aligned_cols=130 Identities=21% Similarity=0.226 Sum_probs=105.2
Q ss_pred CCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEE
Q 046860 99 LTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLI 178 (234)
Q Consensus 99 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 178 (234)
...|+.+++++|.|+ .+.++..-.+.++.|++++|.+. .+ +.++.+++|+.|++++|.++ .+...-.++.+++.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 457889999999998 77778888999999999999998 33 34788999999999999988 4444344678899999
Q ss_pred cccCcccccCCCCCCCCCCCeEecccCcccccC-CccCCCCCCcCEEeccCCccCC
Q 046860 179 LFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYL-PHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 179 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
|+.|.+. .+...-.+.+|..||+++|+|.... ...++++|-|.++.|.+|.+..
T Consensus 359 La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999987 3333323888999999999987632 3568999999999999998753
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=7.8e-10 Score=68.00 Aligned_cols=59 Identities=32% Similarity=0.449 Sum_probs=27.2
Q ss_pred CCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCc
Q 046860 77 HLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQ 135 (234)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 135 (234)
+|++|++++|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444555444443333344444455555555444443333344444444444444443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=2.9e-11 Score=96.66 Aligned_cols=182 Identities=18% Similarity=0.146 Sum_probs=132.7
Q ss_pred CCEEEEEcCCCCcccccC---CCcCCCCCCCCEEEccCCccccCC-------------CccCCCCCCCcEEEeecccccc
Q 046860 51 GRVIKISLPKIGLKGTLH---DFSFSSFPHLAYLDLSYNELFGTI-------------PPQISNLTNLTTLYFGGDQFSG 114 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~~ 114 (234)
++++.|+||+|.+.-..+ ...+.+...|++|.+.+|.+.... ......-++|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 479999999998863221 123456788999999999875211 1224556899999999999873
Q ss_pred c----CCccCcCCCCCcEEEcccCcCCCC----CCccccCCCCCcEEEcccCcCccC----CCccCCCCCCCceEEcccC
Q 046860 115 N----IPPEVGLMSHLELLHIDTNQLDGS----IPPELGQLSSLVVLSLFFNHLNGS----VPPSLGNLTNLQQLILFSN 182 (234)
Q Consensus 115 ~----~p~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n 182 (234)
. +...+...+.|+.+.+.+|.|... +...|..+++|+.|+|.+|.++.. +...+..++.|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2 223456678999999999988621 234567899999999999998742 3445667889999999999
Q ss_pred cccccCCCC----CC--CCCCCeEecccCccccc----CCccCCCCCCcCEEeccCCccC
Q 046860 183 NLSGSIPPS----LE--YPMLTTLNLDFNHFTSY----LPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 183 ~l~~~~~~~----~~--~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
.+...-... +. .+.|+.+.+.+|.|+.. +..++...|.|..|+|++|.+.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 886432221 22 68899999999998753 2334567899999999999983
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.80 E-value=6e-09 Score=59.10 Aligned_cols=42 Identities=40% Similarity=0.933 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCceeeeEEeC
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCN 48 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~g~~~~ 48 (234)
++|++||++||+++..++...+.+|... ...++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~-----~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPS-----SDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT-------S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCc-----CCCCCeeeccEEeC
Confidence 5799999999999987777889999322 12799999999995
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=1.2e-09 Score=87.63 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=87.8
Q ss_pred CCCEEEEEcCCCCcccc----cCCCcCCCCCCCCEEEccCCc---cccCCCc-------cCCCCCCCcEEEeeccccccc
Q 046860 50 AGRVIKISLPKIGLKGT----LHDFSFSSFPHLAYLDLSYNE---LFGTIPP-------QISNLTNLTTLYFGGDQFSGN 115 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~----~~~~~~~~l~~L~~L~l~~n~---l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~ 115 (234)
...++.|+|++|.+... + ...+.+.+.|++.++++-. +...+|+ ++..+++|++|+|++|-+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i-~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAI-AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHH-HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 44678888888877521 1 2334444555555555421 1112222 233455666666666655433
Q ss_pred CCcc----CcCCCCCcEEEcccCcCCCC-----------------------------------------CCccccCCCCC
Q 046860 116 IPPE----VGLMSHLELLHIDTNQLDGS-----------------------------------------IPPELGQLSSL 150 (234)
Q Consensus 116 ~p~~----~~~l~~L~~L~l~~n~~~~~-----------------------------------------~p~~l~~l~~L 150 (234)
.++. +..+..|++|.+.+|.+... +...|...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 2222 23345555555555554311 11122333445
Q ss_pred cEEEcccCcCccC----CCccCCCCCCCceEEcccCccccc----CCCCCC-CCCCCeEecccCcccccCCcc----C-C
Q 046860 151 VVLSLFFNHLNGS----VPPSLGNLTNLQQLILFSNNLSGS----IPPSLE-YPMLTTLNLDFNHFTSYLPHN----V-C 216 (234)
Q Consensus 151 ~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~-~~~L~~L~l~~n~l~~~~~~~----~-~ 216 (234)
+++.+..|.|... +...+..++.|+.|+|.+|-++.. +...+. ++.|+.+++++|.+....... + .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 5555555444311 112345566666666666655422 112223 556666666666665433222 2 2
Q ss_pred CCCCcCEEeccCCccC
Q 046860 217 RGSMCCRFSLASLVFL 232 (234)
Q Consensus 217 ~~~~L~~L~l~~N~l~ 232 (234)
..|.|..|++.+|.|+
T Consensus 268 ~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEIT 283 (382)
T ss_pred cCCCCceeccCcchhH
Confidence 3566666666666665
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=3.9e-09 Score=89.85 Aligned_cols=171 Identities=23% Similarity=0.220 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHID 132 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 132 (234)
+..+.++.|.+.. + ...+..+..++.|++.+|.+.+ +...+..+++|++|++++|.|+... .+..++.|+.|++.
T Consensus 74 l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhh-h-hcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 3344444444432 1 2234555556666666666552 2222445556666666666655321 23344456666666
Q ss_pred cCcCCCCCCccccCCCCCcEEEcccCcCccCCCcc-CCCCCCCceEEcccCccccc---------------------CCC
Q 046860 133 TNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPS-LGNLTNLQQLILFSNNLSGS---------------------IPP 190 (234)
Q Consensus 133 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~---------------------~~~ 190 (234)
+|.+. .+ ..+..+..|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... +..
T Consensus 149 ~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 149 GNLIS-DI-SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cCcch-hc-cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC
Confidence 66555 22 223345556666666665552222 1 24445555555555544311 111
Q ss_pred CCCCCC--CCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 191 SLEYPM--LTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 191 ~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
...... |+.+++++|.+.. ++..+..+.++..+++..|.+.
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 111222 5677777777654 2234556666777777777654
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=1.2e-08 Score=93.42 Aligned_cols=179 Identities=23% Similarity=0.229 Sum_probs=90.0
Q ss_pred CEEEEEcCCCCc-ccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 52 RVIKISLPKIGL-KGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 52 ~~~~L~l~~~~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
++++|-+..|.. ...++...|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+..+..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 355666655541 11221334556666666666665544466666666666666666666666 6666666666666666
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCc--cCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCC----eEeccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLN--GSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLT----TLNLDF 204 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~----~L~l~~ 204 (234)
+..+.....+|.....+.+|++|.+...... ...-..+..+..|+.+........ .......+++|. .+.+.+
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL-LLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH-hHhhhhhhHHHHHHhHhhhhcc
Confidence 6666544344444445666666666554321 111122233333333333222110 001111122221 222222
Q ss_pred CcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 205 NHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 205 n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+... ..+..+..+.+|+.|.+.++.+++
T Consensus 704 ~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 704 CSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cccc-eeecccccccCcceEEEEcCCCch
Confidence 2222 233456778888888888887753
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=6.4e-09 Score=88.54 Aligned_cols=131 Identities=24% Similarity=0.246 Sum_probs=100.3
Q ss_pred CCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcE
Q 046860 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVV 152 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 152 (234)
..+..++.++++.|.+.. +-..+..+.+|+.|++.+|.+. .+...+..+++|++|++++|.|+.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 346677778888888763 3345778899999999999998 4444477899999999999999943 24567788999
Q ss_pred EEcccCcCccCCCccCCCCCCCceEEcccCcccccCCC-CCCCCCCCeEecccCcccc
Q 046860 153 LSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPP-SLEYPMLTTLNLDFNHFTS 209 (234)
Q Consensus 153 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~ 209 (234)
|++.+|.+. .+ +.+..+..|+.+++++|.++..-+. .-.+.+++.+++..|.+..
T Consensus 145 L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 145 LNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred heeccCcch-hc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 999999998 33 3456688999999999999844331 1227777778888877654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=9.3e-10 Score=95.85 Aligned_cols=125 Identities=23% Similarity=0.219 Sum_probs=56.5
Q ss_pred CcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEccc
Q 046860 102 LTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFS 181 (234)
Q Consensus 102 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 181 (234)
|...++++|.+. ....++.-++.+++|++++|+++.. +.+..++.|+.||++.|.++ .+|..-..-.+|..|.+.+
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 333444444444 3333344445555555555555522 13444555555555555555 3332212222355555555
Q ss_pred CcccccCCCCCCCCCCCeEecccCcccccC-CccCCCCCCcCEEeccCCcc
Q 046860 182 NNLSGSIPPSLEYPMLTTLNLDFNHFTSYL-PHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 182 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l 231 (234)
|.++ .+.+.-.+.+|+.||+++|.+.+.- -..+..+..|+.|.|.+|.+
T Consensus 242 N~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5554 2222111555555555555554421 11233444555555555544
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=4e-08 Score=77.67 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCCCCeEecccCcccccCC-ccCCCCCCcCEEeccCCccCC
Q 046860 194 YPMLTTLNLDFNHFTSYLP-HNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 194 ~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++.+.-|.++.|.|..+-. ..+.++++|+.|.++.|.+.|
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 4555556666666655432 345667777777777776654
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=2.3e-07 Score=85.17 Aligned_cols=105 Identities=27% Similarity=0.362 Sum_probs=54.8
Q ss_pred CCCEEEccCCc--cccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEE
Q 046860 77 HLAYLDLSYNE--LFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLS 154 (234)
Q Consensus 77 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 154 (234)
.|+.|-+..|. +.......|..+|.|++|++++|.--+.+|..++.+-+|++|+++++.+. .+|..+.+++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555543 32222223445556666666655433455555555666666666666555 5555555566666666
Q ss_pred cccCcCccCCCccCCCCCCCceEEcccC
Q 046860 155 LFFNHLNGSVPPSLGNLTNLQQLILFSN 182 (234)
Q Consensus 155 l~~n~l~~~~~~~~~~~~~L~~L~L~~n 182 (234)
+..+.....+|.....+.+|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 5555443333444444555666555443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=1.7e-08 Score=88.27 Aligned_cols=157 Identities=20% Similarity=0.166 Sum_probs=110.1
Q ss_pred CCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeeccccc---ccCC---ccCc---CCCCCcEEEcccCcCCCC
Q 046860 69 DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFS---GNIP---PEVG---LMSHLELLHIDTNQLDGS 139 (234)
Q Consensus 69 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~p---~~~~---~l~~L~~L~l~~n~~~~~ 139 (234)
|-.+..+..|++|.++++.+.. .-.-..--.+|++|...+ .++ ..+. ..+. .+-.|.+.++++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4456678899999999988752 111111112455543322 111 0111 1111 1345788899999988 6
Q ss_pred CCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCC
Q 046860 140 IPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRG 218 (234)
Q Consensus 140 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~ 218 (234)
+...+.-++.++.|+|++|+++.. ..+..+++|++|+|+.|.++ .+|..-. --.|+.|.+++|.++... .+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLR--GIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhh--hHHhh
Confidence 677788889999999999999843 37889999999999999998 5565444 234999999999987632 36799
Q ss_pred CCcCEEeccCCccCC
Q 046860 219 SMCCRFSLASLVFLD 233 (234)
Q Consensus 219 ~~L~~L~l~~N~l~~ 233 (234)
.+|+.||+++|-|.+
T Consensus 254 ksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhhccchhHhhhhc
Confidence 999999999998875
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=6e-07 Score=51.00 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=23.7
Q ss_pred CCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 195 PMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 195 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++|++|++++|.|+. +|..++++++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 356677777777765 44446777777777777777664
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=1.6e-08 Score=71.11 Aligned_cols=105 Identities=28% Similarity=0.429 Sum_probs=75.4
Q ss_pred CCCEEEccCCccccCCCcc---CCCCCCCcEEEeecccccccCCccCcC-CCCCcEEEcccCcCCCCCCccccCCCCCcE
Q 046860 77 HLAYLDLSYNELFGTIPPQ---ISNLTNLTTLYFGGDQFSGNIPPEVGL-MSHLELLHIDTNQLDGSIPPELGQLSSLVV 152 (234)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 152 (234)
.+..++++.|++- .++++ +.....|...++++|.+. .+|+.|.. .+.+++|++.+|.++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3456777777664 33333 334456667788888887 66666543 457788888888888 67877888888888
Q ss_pred EEcccCcCccCCCccCCCCCCCceEEcccCccc
Q 046860 153 LSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 153 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 185 (234)
++++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 888888887 66777777778888888888776
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.25 E-value=2e-06 Score=64.48 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCEEEccCCccccCCCccCC-CCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcc
Q 046860 78 LAYLDLSYNELFGTIPPQIS-NLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLF 156 (234)
Q Consensus 78 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 156 (234)
-+.+++++.++. .+. .++ -..+...+++++|.+. .+ ..|..++.|.+|.+.+|.|+..-|..-..+++|+.|.+.
T Consensus 21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chh-hccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 455666666553 111 111 1335666778887765 22 335567777888888888875544444456777888888
Q ss_pred cCcCccCCC--ccCCCCCCCceEEcccCcccccCCCCC----C-CCCCCeEeccc
Q 046860 157 FNHLNGSVP--PSLGNLTNLQQLILFSNNLSGSIPPSL----E-YPMLTTLNLDF 204 (234)
Q Consensus 157 ~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~----~-~~~L~~L~l~~ 204 (234)
+|.+. .+- ..+..+++|++|.+-+|.++.. ...- . +|+|+.||++.
T Consensus 97 nNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 97 NNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred Ccchh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhh
Confidence 87776 221 2355677777777777777622 2211 1 56777777654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=8.4e-07 Score=69.49 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=114.5
Q ss_pred CCCEEEEEcCCCCcccccC---CCcCCCCCCCCEEEccCCccc---cCCC-------ccCCCCCCCcEEEeecccccccC
Q 046860 50 AGRVIKISLPKIGLKGTLH---DFSFSSFPHLAYLDLSYNELF---GTIP-------PQISNLTNLTTLYFGGDQFSGNI 116 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~---~~~~~~l~~L~~L~l~~n~l~---~~~~-------~~~~~l~~L~~L~l~~n~l~~~~ 116 (234)
...++.++|++|.+....+ ...+++-.+|+..+++.-... ..++ .++-+||+|+..+++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4568999999999864320 234555677777777753221 1122 34567899999999999887666
Q ss_pred Ccc----CcCCCCCcEEEcccCcCCCCCCcc-------------ccCCCCCcEEEcccCcCccCCCc-----cCCCCCCC
Q 046860 117 PPE----VGLMSHLELLHIDTNQLDGSIPPE-------------LGQLSSLVVLSLFFNHLNGSVPP-----SLGNLTNL 174 (234)
Q Consensus 117 p~~----~~~l~~L~~L~l~~n~~~~~~p~~-------------l~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~~L 174 (234)
|+. +...+.|.+|.+++|.+....-.. ...-+.|+++.+..|++. ..+. .+..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 654 355678999999999876221111 123578889999888876 3332 12223567
Q ss_pred ceEEcccCcccccCCCCC--------C-CCCCCeEecccCccccc----CCccCCCCCCcCEEeccCCccC
Q 046860 175 QQLILFSNNLSGSIPPSL--------E-YPMLTTLNLDFNHFTSY----LPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 175 ~~L~L~~n~l~~~~~~~~--------~-~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+.+.+..|.|. |..+ . +.+|+.|+++.|-++-. +...++..+.|+.|.+..|-++
T Consensus 188 k~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 188 KEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 77888888765 3311 1 57788888888877642 2234556666777777766554
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=6.9e-06 Score=61.63 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcccccCCCcCCC-CCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSS-FPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
-+++++++..+... +.++. +.....+|+++|.+. . ...|..++.|++|.+.+|+|+..-|.--..+++|.+|.+
T Consensus 21 e~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccch---hhccccccccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 45677777766421 11222 345678999999986 2 336788999999999999999655554556788999999
Q ss_pred ccCcCCCCC-CccccCCCCCcEEEcccCcCccC---CCccCCCCCCCceEEcccC
Q 046860 132 DTNQLDGSI-PPELGQLSSLVVLSLFFNHLNGS---VPPSLGNLTNLQQLILFSN 182 (234)
Q Consensus 132 ~~n~~~~~~-p~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n 182 (234)
.+|.+.... -..+..++.|++|.+-+|.++.. -...+..+|+|+.|+.+.-
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999887211 12356789999999999988742 1235668899999987654
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1.2e-05 Score=67.41 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecc-cccccCCccCcCCCCCcEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGD-QFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L 129 (234)
...+.|++++|.++. + | . --.+|+.|.+++|.-...+|..+ .+.|++|.+++| .+. .+|. +|++|
T Consensus 52 ~~l~~L~Is~c~L~s-L-P-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIES-L-P-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCcc-c-C-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 457899999997763 3 2 1 12469999998865433566544 358999999998 454 4554 46677
Q ss_pred EcccCcCC--CCCCccccCCCCCcEEEcccCcCc--cCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccC
Q 046860 130 HIDTNQLD--GSIPPELGQLSSLVVLSLFFNHLN--GSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFN 205 (234)
Q Consensus 130 ~l~~n~~~--~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 205 (234)
++..+... ..+|. +|+.|.+.++... ..+|.. --++|++|.+++|... .+|..+ ..+|+.|.++.+
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L-P~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL-PESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc-cccCcEEEeccc
Confidence 77665543 13333 3555555432211 011111 1147888888877655 333322 246777777665
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=1.2e-07 Score=66.71 Aligned_cols=114 Identities=24% Similarity=0.311 Sum_probs=80.9
Q ss_pred eCCCCCEEEEEcCCCCccc--ccCCCcCCCCCCCCEEEccCCccccCCCccCC-CCCCCcEEEeecccccccCCccCcCC
Q 046860 47 CNDAGRVIKISLPKIGLKG--TLHDFSFSSFPHLAYLDLSYNELFGTIPPQIS-NLTNLTTLYFGGDQFSGNIPPEVGLM 123 (234)
Q Consensus 47 ~~~~~~~~~L~l~~~~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l 123 (234)
|++....-.++|+.+.+.. .. ...+.+..+|...++++|.+. .+|..|. .++.++.|++++|.+. .+|..+..+
T Consensus 23 cedakE~h~ldLssc~lm~i~da-vy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam 99 (177)
T KOG4579|consen 23 CEDAKELHFLDLSSCQLMYIADA-VYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM 99 (177)
T ss_pred hHHHHHhhhcccccchhhHHHHH-HHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhh
Confidence 4445556677777777641 11 223445567777888888887 5565554 4567888888888888 677778888
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCC
Q 046860 124 SHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVP 165 (234)
Q Consensus 124 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 165 (234)
+.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|
T Consensus 100 ~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred HHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 88888888888888 67777777888888888887765 444
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=2.9e-06 Score=48.12 Aligned_cols=35 Identities=40% Similarity=0.632 Sum_probs=14.0
Q ss_pred CcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCc
Q 046860 126 LELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLN 161 (234)
Q Consensus 126 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 161 (234)
|++|++++|+++ .+|+.++++++|++|++++|.++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 33333444444444444444443
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=4.3e-07 Score=71.07 Aligned_cols=182 Identities=19% Similarity=0.100 Sum_probs=116.2
Q ss_pred CCEEEEEcCCCCcccccCC---CcCCCCCCCCEEEccCCccccCCCcc-------------CCCCCCCcEEEeecccccc
Q 046860 51 GRVIKISLPKIGLKGTLHD---FSFSSFPHLAYLDLSYNELFGTIPPQ-------------ISNLTNLTTLYFGGDQFSG 114 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~ 114 (234)
++++.++|++|.+....++ ..+++-..|..|.+++|.+....... ...-|.|+++....|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 5688888888887644311 23455677888888888764221111 234577888888888876
Q ss_pred cCCc-----cCcCCCCCcEEEcccCcCCCCC-----CccccCCCCCcEEEcccCcCccC----CCccCCCCCCCceEEcc
Q 046860 115 NIPP-----EVGLMSHLELLHIDTNQLDGSI-----PPELGQLSSLVVLSLFFNHLNGS----VPPSLGNLTNLQQLILF 180 (234)
Q Consensus 115 ~~p~-----~~~~l~~L~~L~l~~n~~~~~~-----p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~ 180 (234)
..+. .+.....|+++.+.+|.|...- -..+..+.+|+.|++.+|.++.. +...+..++.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 3222 1333457888888888876220 11234568899999999988742 22344567778999988
Q ss_pred cCcccccCCCC----CC---CCCCCeEecccCcccccCC------ccC-CCCCCcCEEeccCCccCC
Q 046860 181 SNNLSGSIPPS----LE---YPMLTTLNLDFNHFTSYLP------HNV-CRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 181 ~n~l~~~~~~~----~~---~~~L~~L~l~~n~l~~~~~------~~~-~~~~~L~~L~l~~N~l~~ 233 (234)
.|.++..-... +. .++|..|...+|.+.+.+. ... ..+|-|..|.+.+|.|.+
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 88776332211 11 6788888888887765322 111 367778888888888764
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.1e-08 Score=78.25 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=34.0
Q ss_pred CCCCCCceEEcccCcc-cccCCCCC-CCCCCCeEecccCcccccCCc---cCCCCCCcCEEeccCC
Q 046860 169 GNLTNLQQLILFSNNL-SGSIPPSL-EYPMLTTLNLDFNHFTSYLPH---NVCRGSMCCRFSLASL 229 (234)
Q Consensus 169 ~~~~~L~~L~L~~n~l-~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~N 229 (234)
..+++|.+|+|++|.. +...-..+ .++.|+++.++.+.. .+|. .+..+|.|.+||+-++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3567777777776643 21111111 267777777777652 2332 2467788888877654
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.7e-08 Score=78.64 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=104.4
Q ss_pred CCCEEEccCCcccc-CCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccC-cCCCCCCc-cccCCCCCcEE
Q 046860 77 HLAYLDLSYNELFG-TIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTN-QLDGSIPP-ELGQLSSLVVL 153 (234)
Q Consensus 77 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~p~-~l~~l~~L~~L 153 (234)
.|+.||+++..++. ..-.-+..|.+|+.|.+.++++.+.+...+..-.+|+.|+++.+ +++..... .+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48888999887762 12223467889999999999998766666777788999999876 44421111 35678899999
Q ss_pred EcccCcCccCCCc-cCCCC-CCCceEEcccCcccc---cCCCCCC-CCCCCeEecccCc-ccccCCccCCCCCCcCEEec
Q 046860 154 SLFFNHLNGSVPP-SLGNL-TNLQQLILFSNNLSG---SIPPSLE-YPMLTTLNLDFNH-FTSYLPHNVCRGSMCCRFSL 226 (234)
Q Consensus 154 ~l~~n~l~~~~~~-~~~~~-~~L~~L~L~~n~l~~---~~~~~~~-~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 226 (234)
+++++.+...... .+.+. ++|..|++++..-.- .+.-... ++++..||++.|. ++......|.+++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 9999887643222 12222 578888888864220 1111112 7899999999886 44434455778999999999
Q ss_pred cCCc
Q 046860 227 ASLV 230 (234)
Q Consensus 227 ~~N~ 230 (234)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 8774
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=1.2e-06 Score=69.47 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=66.0
Q ss_pred CCCCCEEEccCCcccc--CCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCC-ccccCCCCCc
Q 046860 75 FPHLAYLDLSYNELFG--TIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIP-PELGQLSSLV 151 (234)
Q Consensus 75 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~ 151 (234)
..+++++|+.+|.+.. .+..-+.++|.|+.|+++.|++...+...-....+|++|.+.+..+...-. ..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3455555555555531 111123445555555555555542111100123445555555554432211 1233445555
Q ss_pred EEEcccCcCccC--CCccCCCC-CCCceEEcccCccccc--CCCCCC-CCCCCeEecccCcccccCC-ccCCCCCCcCEE
Q 046860 152 VLSLFFNHLNGS--VPPSLGNL-TNLQQLILFSNNLSGS--IPPSLE-YPMLTTLNLDFNHFTSYLP-HNVCRGSMCCRF 224 (234)
Q Consensus 152 ~L~l~~n~l~~~--~~~~~~~~-~~L~~L~L~~n~l~~~--~~~~~~-~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L 224 (234)
++.++.|.+... -......+ +.++++..-.|...-. ...... ++++..+-+..|.+.+.-. +.+..+|.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 555555533211 00111111 1333333333322100 000111 4566666666665544211 223345666667
Q ss_pred eccCCccC
Q 046860 225 SLASLVFL 232 (234)
Q Consensus 225 ~l~~N~l~ 232 (234)
.|+.|+|.
T Consensus 230 nL~~~~id 237 (418)
T KOG2982|consen 230 NLGANNID 237 (418)
T ss_pred hhcccccc
Confidence 77777664
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=3.7e-06 Score=75.54 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=74.6
Q ss_pred CCCcEEEeeccccc-ccCCccC-cCCCCCcEEEcccCcCCC-CCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCce
Q 046860 100 TNLTTLYFGGDQFS-GNIPPEV-GLMSHLELLHIDTNQLDG-SIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQ 176 (234)
Q Consensus 100 ~~L~~L~l~~n~l~-~~~p~~~-~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 176 (234)
.+|++|++++.+.- ..-|..+ ..+|+|++|.+++-.+.. .+-....++++|..||+++..++ .+ ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 46777777765432 1112222 236777777777755432 12223356777777777777776 22 56667777777
Q ss_pred EEcccCcccc--cCCCCCCCCCCCeEecccCcccccC--C----ccCCCCCCcCEEeccCCccC
Q 046860 177 LILFSNNLSG--SIPPSLEYPMLTTLNLDFNHFTSYL--P----HNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 177 L~L~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~--~----~~~~~~~~L~~L~l~~N~l~ 232 (234)
|.+.+-.+.. .+-..+.+++|+.||+|........ . +.-..+|.|+.||.|+..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 7776655542 1112233777777777776543321 1 11234677777777776654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00026 Score=59.54 Aligned_cols=123 Identities=22% Similarity=0.229 Sum_probs=70.9
Q ss_pred CceeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCC-ccccCCCccCCCCCCCcEEEeeccccc--cc
Q 046860 39 PCAWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYN-ELFGTIPPQISNLTNLTTLYFGGDQFS--GN 115 (234)
Q Consensus 39 ~c~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~ 115 (234)
.|.+.... .-...++.|.++++.-...+ +..+ ...|+.|++++| .+. .+|. .|+.|++..+... ..
T Consensus 61 ~c~L~sLP-~LP~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~ 129 (426)
T PRK15386 61 DCDIESLP-VLPNELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKN 129 (426)
T ss_pred CCCCcccC-CCCCCCcEEEccCCCCcccC-Cchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCccccc
Confidence 44444433 23446999999986433334 3333 358999999998 444 4443 5777888766543 13
Q ss_pred CCccCcCCCCCcEEEcccCcCC--CCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCc
Q 046860 116 IPPEVGLMSHLELLHIDTNQLD--GSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNN 183 (234)
Q Consensus 116 ~p~~~~~l~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 183 (234)
+|. +|+.|.+.++... ..+|..+ -++|++|.+++|... .+|..+. .+|+.|.++.+.
T Consensus 130 LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 130 VPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred Ccc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 333 4566666433211 1122111 157888998887755 4454333 478888887663
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.62 E-value=0.00033 Score=49.32 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=27.4
Q ss_pred CCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCc
Q 046860 96 ISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQ 175 (234)
Q Consensus 96 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 175 (234)
|.++.+|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...|..+.+++.+.+.. .+.......+..+.+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444432 222222233444444444444432 2212222344444455555433 22212223344455555
Q ss_pred eEEccc
Q 046860 176 QLILFS 181 (234)
Q Consensus 176 ~L~L~~ 181 (234)
.+.+..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 555543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=1.9e-05 Score=71.13 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=14.9
Q ss_pred CCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccc
Q 046860 122 LMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFF 157 (234)
Q Consensus 122 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 157 (234)
++++|..||++++.++. + ..++.+++|+.|.+.+
T Consensus 171 sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCCccC-c-HHHhccccHHHHhccC
Confidence 34444444444444441 1 3344444444444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=3.8e-05 Score=59.84 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecc--cccccCCccCcCCCCCcEEEcccCcCCC-CCCccccCCCC
Q 046860 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGD--QFSGNIPPEVGLMSHLELLHIDTNQLDG-SIPPELGQLSS 149 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~ 149 (234)
..+..|+.+++.+..++. -..|..+++|++|.++.| ++.+.++.....+++|+++.++.|++.. ..-..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 334455555555555541 123455666666666666 4444444444455666666666666652 00112334555
Q ss_pred CcEEEcccCcCccCC---CccCCCCCCCceEE
Q 046860 150 LVVLSLFFNHLNGSV---PPSLGNLTNLQQLI 178 (234)
Q Consensus 150 L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~ 178 (234)
|..|++.+|..+..- -..|.-+++|++|+
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 666666666554311 01233445555554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.52 E-value=4.3e-05 Score=59.55 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccC--cCCCCCCccccCCCCCcEEEcccCcCccCCCcc--
Q 046860 92 IPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTN--QLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPS-- 167 (234)
Q Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-- 167 (234)
+......+..|+.|.+.+..++. + ..+..+++|+.|.++.| .+.+.++...-.+++|+++++++|++.. ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 33334445566666666666652 2 23456778888888888 5555555555566888888888888772 232
Q ss_pred -CCCCCCCceEEcccCcccccCCC----CCC-CCCCCeEe
Q 046860 168 -LGNLTNLQQLILFSNNLSGSIPP----SLE-YPMLTTLN 201 (234)
Q Consensus 168 -~~~~~~L~~L~L~~n~l~~~~~~----~~~-~~~L~~L~ 201 (234)
+..+.+|..|++.+|..+. .-. .+. +++|.+++
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 3455667777777776653 111 122 56666665
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00055 Score=48.21 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=45.1
Q ss_pred CCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCC
Q 046860 69 DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLS 148 (234)
Q Consensus 69 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 148 (234)
...|.+..+|+.+.+.. .+......+|..+++|+.+.+..+ +...-...|..+.+++.+.+.. .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34455556666666653 344334445666666666666554 4423333455555666666654 22212233455566
Q ss_pred CCcEEEcccCcCccCCCccCCCCCCCceEEccc
Q 046860 149 SLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFS 181 (234)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 181 (234)
+|+.+.+..+ +.......+.++ +++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6666666544 332223344444 566555543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=6.6e-06 Score=64.80 Aligned_cols=102 Identities=25% Similarity=0.311 Sum_probs=75.1
Q ss_pred eCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCc--cCcCCC
Q 046860 47 CNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPP--EVGLMS 124 (234)
Q Consensus 47 ~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~ 124 (234)
|+.-..|+.|++-++++.+. ....+|+.|++|.|+-|.|+... .+..|++|+.|+|+.|.|. .+.+ -+.+++
T Consensus 15 ~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred hhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 44344577888888888742 35677899999999999987433 4678999999999999987 3322 357899
Q ss_pred CCcEEEcccCcCCCCCCcc-----ccCCCCCcEEE
Q 046860 125 HLELLHIDTNQLDGSIPPE-----LGQLSSLVVLS 154 (234)
Q Consensus 125 ~L~~L~l~~n~~~~~~p~~-----l~~l~~L~~L~ 154 (234)
+|++|++..|...+..+.. +..+++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999988776555442 34577777766
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=2.9e-05 Score=61.24 Aligned_cols=99 Identities=22% Similarity=0.152 Sum_probs=59.5
Q ss_pred CCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCc--cccCCCCCcE
Q 046860 75 FPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPP--ELGQLSSLVV 152 (234)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~--~l~~l~~L~~ 152 (234)
+...++|++.+|.+..+ .....++.|++|.|+-|.|+..- .+..|+.|++|++..|.|. .+.. .+.++++|++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 44566777777776521 12345677777777777776322 2556777777777777766 3332 2456777777
Q ss_pred EEcccCcCccCCCc-----cCCCCCCCceEE
Q 046860 153 LSLFFNHLNGSVPP-----SLGNLTNLQQLI 178 (234)
Q Consensus 153 L~l~~n~l~~~~~~-----~~~~~~~L~~L~ 178 (234)
|.|..|.-.+.-+. .+..+|+|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777765543332 334456666654
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0059 Score=28.83 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=4.9
Q ss_pred CcEEEeeccccc
Q 046860 102 LTTLYFGGDQFS 113 (234)
Q Consensus 102 L~~L~l~~n~l~ 113 (234)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.0057 Score=28.87 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=10.7
Q ss_pred CCeEecccCcccccCCccCC
Q 046860 197 LTTLNLDFNHFTSYLPHNVC 216 (234)
Q Consensus 197 L~~L~l~~n~l~~~~~~~~~ 216 (234)
|++|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 3444444
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.42 E-value=0.033 Score=24.42 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=7.8
Q ss_pred CCcCEEeccCCccCC
Q 046860 219 SMCCRFSLASLVFLD 233 (234)
Q Consensus 219 ~~L~~L~l~~N~l~~ 233 (234)
++|+.|+|++|+|++
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 356777777777653
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.16 E-value=0.00058 Score=52.76 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=36.2
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
+++.||++.|.+... ..-|..+..+..|+++.|.+. ..|..+.....+..+++..|..+ ..|.+++..+++++++.
T Consensus 43 r~tvld~~s~r~vn~--~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNL--GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred eeeeehhhhhHHHhh--ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 445555555544311 222333444444455544443 34444444444444444444444 44444444555554444
Q ss_pred ccCc
Q 046860 132 DTNQ 135 (234)
Q Consensus 132 ~~n~ 135 (234)
..+.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 4443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.03 E-value=3.3e-05 Score=66.67 Aligned_cols=181 Identities=24% Similarity=0.216 Sum_probs=109.5
Q ss_pred EEEEEcCCCCccccc---CCCcCCCCCCCCEEEccCCccccC----CCccCCCC-CCCcEEEeeccccccc----CCccC
Q 046860 53 VIKISLPKIGLKGTL---HDFSFSSFPHLAYLDLSYNELFGT----IPPQISNL-TNLTTLYFGGDQFSGN----IPPEV 120 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~ 120 (234)
+..++|.+|.+.... ....+....+|..|++++|.+... +...+... ..+++|.+..|.++.. ++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667778888776321 033455677888888888877521 11222332 4567777777777632 23344
Q ss_pred cCCCCCcEEEcccCcCCC----CCCcccc----CCCCCcEEEcccCcCccC----CCccCCCCCC-CceEEcccCccccc
Q 046860 121 GLMSHLELLHIDTNQLDG----SIPPELG----QLSSLVVLSLFFNHLNGS----VPPSLGNLTN-LQQLILFSNNLSGS 187 (234)
Q Consensus 121 ~~l~~L~~L~l~~n~~~~----~~p~~l~----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~-L~~L~L~~n~l~~~ 187 (234)
....+++.+++..|.+.. .++..+. ...++++|.+.++.++.. ....+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556778888888887631 1222232 466788888888876631 1123333444 56688888877533
Q ss_pred ----CCCCCC-C-CCCCeEecccCcccccCC----ccCCCCCCcCEEeccCCccCC
Q 046860 188 ----IPPSLE-Y-PMLTTLNLDFNHFTSYLP----HNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 188 ----~~~~~~-~-~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~N~l~~ 233 (234)
....+. . ..++.++++.|.|..... +.+..+++++.+.++.|.+.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 111122 3 466888888888876433 445567788888888888765
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.12 E-value=0.025 Score=27.16 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=9.2
Q ss_pred CCCcCEEeccCCccCC
Q 046860 218 GSMCCRFSLASLVFLD 233 (234)
Q Consensus 218 ~~~L~~L~l~~N~l~~ 233 (234)
+++|++|+|++|+|++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 3567777777777654
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.92 E-value=0.0017 Score=50.24 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=77.3
Q ss_pred CCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCC
Q 046860 69 DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLS 148 (234)
Q Consensus 69 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 148 (234)
...+..+...+.||++.|.+. -....|..+..|..|+++.|++. .+|.+++.+..++.++...|..+ ..|.++...+
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 456777888999999999876 34556777888999999999998 88999999888999999999888 8899999999
Q ss_pred CCcEEEcccCcCc
Q 046860 149 SLVVLSLFFNHLN 161 (234)
Q Consensus 149 ~L~~L~l~~n~l~ 161 (234)
.++++++-.|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999999888765
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.011 Score=44.77 Aligned_cols=34 Identities=21% Similarity=0.026 Sum_probs=15.0
Q ss_pred CCCCCeEecccCc-ccccCCccCCCCCCcCEEecc
Q 046860 194 YPMLTTLNLDFNH-FTSYLPHNVCRGSMCCRFSLA 227 (234)
Q Consensus 194 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~ 227 (234)
.++|+.|++++|. |++..-..+..+++|+.|.|.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 3445555555442 444333334444444444443
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.66 E-value=0.2 Score=25.07 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=10.6
Q ss_pred CCcCEEeccCCccCC
Q 046860 219 SMCCRFSLASLVFLD 233 (234)
Q Consensus 219 ~~L~~L~l~~N~l~~ 233 (234)
+.|++|||++|.|.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777777764
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.40 E-value=0.29 Score=23.77 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=8.3
Q ss_pred CCCCeEecccCcccc
Q 046860 195 PMLTTLNLDFNHFTS 209 (234)
Q Consensus 195 ~~L~~L~l~~n~l~~ 209 (234)
++|++|++++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.40 E-value=0.29 Score=23.77 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=8.3
Q ss_pred CCCCeEecccCcccc
Q 046860 195 PMLTTLNLDFNHFTS 209 (234)
Q Consensus 195 ~~L~~L~l~~n~l~~ 209 (234)
++|++|++++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555554
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.26 E-value=0.00069 Score=58.63 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=105.1
Q ss_pred CCEEEccCCccccC----CCccCCCCCCCcEEEeecccccccCC----ccCcCC-CCCcEEEcccCcCCCC----CCccc
Q 046860 78 LAYLDLSYNELFGT----IPPQISNLTNLTTLYFGGDQFSGNIP----PEVGLM-SHLELLHIDTNQLDGS----IPPEL 144 (234)
Q Consensus 78 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l-~~L~~L~l~~n~~~~~----~p~~l 144 (234)
+..+.+.+|.+... +...+...+.|+.|++++|.+...-. ..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77788888887632 22345678899999999999873211 122232 5678888888887743 33455
Q ss_pred cCCCCCcEEEcccCcCcc----CCCccC----CCCCCCceEEcccCcccccCCC----CCC-CCC-CCeEecccCccccc
Q 046860 145 GQLSSLVVLSLFFNHLNG----SVPPSL----GNLTNLQQLILFSNNLSGSIPP----SLE-YPM-LTTLNLDFNHFTSY 210 (234)
Q Consensus 145 ~~l~~L~~L~l~~n~l~~----~~~~~~----~~~~~L~~L~L~~n~l~~~~~~----~~~-~~~-L~~L~l~~n~l~~~ 210 (234)
.....++.++++.|.+.. .++..+ ....++++|.+.++.++..... .+. .+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667889999999998742 123333 3477899999999988732211 122 233 66699999998754
Q ss_pred ----CCccCCCC-CCcCEEeccCCccCCC
Q 046860 211 ----LPHNVCRG-SMCCRFSLASLVFLDG 234 (234)
Q Consensus 211 ----~~~~~~~~-~~L~~L~l~~N~l~~~ 234 (234)
....+..+ ..++.++++.|.|++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~ 277 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEK 277 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCcccc
Confidence 22334455 6789999999999863
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.91 E-value=0.021 Score=49.37 Aligned_cols=108 Identities=22% Similarity=0.116 Sum_probs=46.0
Q ss_pred CCCCcEEEeeccccccc--CCccCcCCCCCcEEEcccC-cCCCCCC----ccccCCCCCcEEEcccCc-CccCCCccCC-
Q 046860 99 LTNLTTLYFGGDQFSGN--IPPEVGLMSHLELLHIDTN-QLDGSIP----PELGQLSSLVVLSLFFNH-LNGSVPPSLG- 169 (234)
Q Consensus 99 l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n-~~~~~~p----~~l~~l~~L~~L~l~~n~-l~~~~~~~~~- 169 (234)
++.|+.+.+..+.-... .......++.|+.|+++++ ......+ .....+++|+.++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555432211 1122344556666666542 1110111 112334556666666555 3322222222
Q ss_pred CCCCCceEEcccCc-ccccCCCCCC--CCCCCeEecccCc
Q 046860 170 NLTNLQQLILFSNN-LSGSIPPSLE--YPMLTTLNLDFNH 206 (234)
Q Consensus 170 ~~~~L~~L~L~~n~-l~~~~~~~~~--~~~L~~L~l~~n~ 206 (234)
.+++|++|.+.++. +++.--..+. ++.|+.|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25566666655444 3311111111 4556666666554
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.58 E-value=0.097 Score=45.21 Aligned_cols=109 Identities=17% Similarity=-0.019 Sum_probs=69.3
Q ss_pred CCCCcEEEcccCcCCCC--CCccccCCCCCcEEEcccC-cCccCC----CccCCCCCCCceEEcccCc-ccccCCCCCC-
Q 046860 123 MSHLELLHIDTNQLDGS--IPPELGQLSSLVVLSLFFN-HLNGSV----PPSLGNLTNLQQLILFSNN-LSGSIPPSLE- 193 (234)
Q Consensus 123 l~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~l~~n-~l~~~~----~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~- 193 (234)
++.|+.+.+..+..... +-.....++.|++++++++ ...... ......+++|+.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 67788888877743322 2234457899999999873 111111 1233456889999998887 5433222222
Q ss_pred -CCCCCeEecccCc-ccccCCcc-CCCCCCcCEEeccCCcc
Q 046860 194 -YPMLTTLNLDFNH-FTSYLPHN-VCRGSMCCRFSLASLVF 231 (234)
Q Consensus 194 -~~~L~~L~l~~n~-l~~~~~~~-~~~~~~L~~L~l~~N~l 231 (234)
+++|+.|.+..+. +++..-.. ...++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 6789999977776 55433222 34789999999998754
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=0.061 Score=40.85 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCC
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYN 86 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n 86 (234)
|+.+|-++..+...- -..+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHH-HHHHhccchhhhheeccc
Confidence 566666666555333 334444555555555544
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.00 E-value=1 Score=22.12 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=8.7
Q ss_pred CCcCEEeccCCccC
Q 046860 219 SMCCRFSLASLVFL 232 (234)
Q Consensus 219 ~~L~~L~l~~N~l~ 232 (234)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.98 E-value=1.3 Score=21.48 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=11.4
Q ss_pred CCCcCEEeccCCc-cCC
Q 046860 218 GSMCCRFSLASLV-FLD 233 (234)
Q Consensus 218 ~~~L~~L~l~~N~-l~~ 233 (234)
+++|++|+|++|. +||
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4678888888874 554
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.68 E-value=2 Score=21.09 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.4
Q ss_pred CCcEEEeeccccc
Q 046860 101 NLTTLYFGGDQFS 113 (234)
Q Consensus 101 ~L~~L~l~~n~l~ 113 (234)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555544
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=72.64 E-value=2.1 Score=36.39 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCCCCEEEccCCccccCCC--ccCCCCCCCcEEEeeccccc--ccCCccCcCCCCCcEEEcccCcCC-CC----CCcccc
Q 046860 75 FPHLAYLDLSYNELFGTIP--PQISNLTNLTTLYFGGDQFS--GNIPPEVGLMSHLELLHIDTNQLD-GS----IPPELG 145 (234)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L~l~~n~~~-~~----~p~~l~ 145 (234)
..+|+.+.++.|+--+... .--.++++|+.+++..+... +.+...-.+++.|+.+.++++... .. +...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 4566666666665211100 00134566666666666543 111122234566666666665332 11 111123
Q ss_pred CCCCCcEEEcccCcCc-cCCCccCCCCCCCceEEcccCc
Q 046860 146 QLSSLVVLSLFFNHLN-GSVPPSLGNLTNLQQLILFSNN 183 (234)
Q Consensus 146 ~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~ 183 (234)
.+..|..+.++++... ....+.+..+++|+.+.+.+++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4556666666666543 1223345566677777666654
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.54 E-value=1.5 Score=38.52 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=5.1
Q ss_pred CCCceEEcccC
Q 046860 172 TNLQQLILFSN 182 (234)
Q Consensus 172 ~~L~~L~L~~n 182 (234)
|+|+.|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44444444444
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.99 E-value=5.3 Score=35.25 Aligned_cols=62 Identities=26% Similarity=0.255 Sum_probs=41.1
Q ss_pred CCCCCceEEcccCcccccCC-CCCC--CCCCCeEecccC--cccccCCccCC--CCCCcCEEeccCCccCC
Q 046860 170 NLTNLQQLILFSNNLSGSIP-PSLE--YPMLTTLNLDFN--HFTSYLPHNVC--RGSMCCRFSLASLVFLD 233 (234)
Q Consensus 170 ~~~~L~~L~L~~n~l~~~~~-~~~~--~~~L~~L~l~~n--~l~~~~~~~~~--~~~~L~~L~l~~N~l~~ 233 (234)
+.+.+..++|++|++..... ..+. .|+|..|+|++| .+... .++. ....|++|-+.+|.+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 56778888899998763211 1112 789999999999 44331 1233 34457788888888764
No 89
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=57.41 E-value=5.4 Score=34.05 Aligned_cols=154 Identities=20% Similarity=0.066 Sum_probs=83.7
Q ss_pred EEEEEcCCCCc-ccccCCCcCCCCCCCCEEEccCCccccC-CCccC-CCCCCCcEEEeecccc-cccCCcc-CcCCCCCc
Q 046860 53 VIKISLPKIGL-KGTLHDFSFSSFPHLAYLDLSYNELFGT-IPPQI-SNLTNLTTLYFGGDQF-SGNIPPE-VGLMSHLE 127 (234)
Q Consensus 53 ~~~L~l~~~~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-~~l~~L~~L~l~~n~l-~~~~p~~-~~~l~~L~ 127 (234)
|..+++.++.. ++.-.-..-.....|+.|+.+++.-.+. .-.++ .+.++|+.|.+..|+- +..-... -.+++.|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 56666556532 2111011123366788888888753211 11122 4678899999888873 3211111 14577888
Q ss_pred EEEcccCcCCC--CCCccccCCCCCcEEEcccCcCccCC-----CccCCCCCCCceEEcccCccccc-CCCCCC-CCCCC
Q 046860 128 LLHIDTNQLDG--SIPPELGQLSSLVVLSLFFNHLNGSV-----PPSLGNLTNLQQLILFSNNLSGS-IPPSLE-YPMLT 198 (234)
Q Consensus 128 ~L~l~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~-~~~L~ 198 (234)
.+++..+.... .+...-.+++.|+.+.++.+...... ...-..+..|..+.|+++..... .-..+. .++|+
T Consensus 350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 88888775431 12222246788888888876543111 12223456777888888765422 111222 56777
Q ss_pred eEecccCc
Q 046860 199 TLNLDFNH 206 (234)
Q Consensus 199 ~L~l~~n~ 206 (234)
.+++-.+.
T Consensus 430 ri~l~~~q 437 (483)
T KOG4341|consen 430 RIELIDCQ 437 (483)
T ss_pred eeeeechh
Confidence 77665543
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.25 E-value=58 Score=34.96 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=24.0
Q ss_pred EcCCCCcccccCCCcCCCCCCCCEEEccCCccc
Q 046860 57 SLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELF 89 (234)
Q Consensus 57 ~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 89 (234)
||++|.|+. ++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Lst-Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST-IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc-cChHHhccCCCceEEEeeCCccc
Confidence 577888874 33677888888888888888764
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.99 E-value=61 Score=34.80 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=24.0
Q ss_pred EeecccccccCCccCcCCCCCcEEEcccCcCC
Q 046860 106 YFGGDQFSGNIPPEVGLMSHLELLHIDTNQLD 137 (234)
Q Consensus 106 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 137 (234)
+|++|+|+...+..|..+++|++|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47788888444446777888999999888765
Done!