Query 046860
Match_columns 234
No_of_seqs 189 out of 2472
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.2E-36 1.4E-40 244.7 16.9 220 2-232 5-234 (313)
2 4eco_A Uncharacterized protein 100.0 6.8E-33 2.3E-37 245.5 11.8 218 3-231 30-365 (636)
3 3rgz_A Protein brassinosteroid 100.0 3E-31 1E-35 239.6 17.6 217 2-232 11-260 (768)
4 4fcg_A Uncharacterized protein 100.0 1.5E-31 5E-36 219.2 10.7 223 2-232 26-290 (328)
5 4ecn_A Leucine-rich repeat pro 100.0 6.9E-31 2.4E-35 238.2 14.3 221 2-232 268-608 (876)
6 2o6q_A Variable lymphocyte rec 100.0 2.4E-27 8.1E-32 189.1 20.9 182 52-234 38-220 (270)
7 3m19_A Variable lymphocyte rec 99.9 1.6E-26 5.6E-31 182.3 18.1 191 38-234 3-194 (251)
8 1ozn_A Reticulon 4 receptor; N 99.9 9.7E-26 3.3E-30 180.9 19.6 180 52-232 33-214 (285)
9 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-27 1.1E-31 192.3 10.7 182 51-233 76-282 (313)
10 3rgz_A Protein brassinosteroid 99.9 9.5E-27 3.3E-31 210.2 13.9 181 52-233 467-718 (768)
11 1ozn_A Reticulon 4 receptor; N 99.9 8.6E-26 2.9E-30 181.3 17.9 184 50-234 55-240 (285)
12 4fcg_A Uncharacterized protein 99.9 7.5E-26 2.6E-30 185.3 14.8 177 52-232 128-314 (328)
13 2z66_A Variable lymphocyte rec 99.9 1.3E-25 4.5E-30 181.9 14.1 194 39-233 6-237 (306)
14 3rfs_A Internalin B, repeat mo 99.9 2.1E-24 7.1E-29 172.2 19.7 179 51-234 41-220 (272)
15 1p9a_G Platelet glycoprotein I 99.9 3.1E-24 1.1E-28 172.8 19.3 179 51-234 31-210 (290)
16 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.4E-29 173.1 15.9 182 52-234 29-239 (276)
17 2z66_A Variable lymphocyte rec 99.9 1E-24 3.5E-29 176.6 14.8 183 50-234 77-263 (306)
18 2xwt_C Thyrotropin receptor; s 99.9 2.7E-24 9.3E-29 168.3 16.2 180 51-233 31-219 (239)
19 3zyi_A Leucine-rich repeat-con 99.9 8.8E-24 3E-28 180.1 19.3 189 42-233 56-280 (452)
20 2o6q_A Variable lymphocyte rec 99.9 2.6E-23 8.8E-28 165.7 19.9 193 37-233 2-195 (270)
21 2id5_A Lingo-1, leucine rich r 99.9 4.7E-24 1.6E-28 182.7 16.6 180 51-231 32-212 (477)
22 3v47_A TOLL-like receptor 5B a 99.9 7E-24 2.4E-28 180.5 17.3 151 36-187 4-169 (455)
23 3zyj_A Leucine-rich repeat-con 99.9 1.8E-23 6.2E-28 177.5 18.8 181 51-234 88-294 (440)
24 3zyj_A Leucine-rich repeat-con 99.9 2.2E-23 7.7E-28 177.0 19.0 189 42-233 45-269 (440)
25 3v47_A TOLL-like receptor 5B a 99.9 1.2E-23 4E-28 179.1 17.0 119 116-234 291-410 (455)
26 2z62_A TOLL-like receptor 4, v 99.9 9.5E-24 3.3E-28 168.6 15.3 173 56-232 12-190 (276)
27 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-23 9.8E-28 170.0 18.2 189 39-232 32-277 (332)
28 1p9a_G Platelet glycoprotein I 99.9 3.9E-23 1.3E-27 166.4 18.5 179 48-233 7-186 (290)
29 2z80_A TOLL-like receptor 2, v 99.9 1E-24 3.5E-29 180.1 9.5 195 36-233 26-236 (353)
30 3oja_B Anopheles plasmodium-re 99.9 7.2E-24 2.5E-28 186.5 15.3 108 53-161 77-184 (597)
31 3zyi_A Leucine-rich repeat-con 99.9 3.2E-23 1.1E-27 176.6 18.5 182 50-234 98-305 (452)
32 1xku_A Decorin; proteoglycan, 99.9 3.9E-23 1.3E-27 169.1 18.0 191 38-232 29-253 (330)
33 2o6s_A Variable lymphocyte rec 99.9 2.9E-23 9.8E-28 159.1 14.5 176 38-220 5-190 (208)
34 3o6n_A APL1; leucine-rich repe 99.9 2.2E-23 7.4E-28 174.3 14.5 107 53-161 71-178 (390)
35 2z81_A CD282 antigen, TOLL-lik 99.9 5E-24 1.7E-28 185.4 11.0 182 51-233 26-210 (549)
36 3vq2_A TLR4, TOLL-like recepto 99.9 6.2E-23 2.1E-27 180.5 16.8 180 51-232 32-217 (606)
37 3rfs_A Internalin B, repeat mo 99.9 4.6E-23 1.6E-27 164.4 14.0 173 50-232 62-235 (272)
38 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-23 1.3E-27 181.9 14.5 178 53-233 378-559 (606)
39 3t6q_A CD180 antigen; protein- 99.9 5.8E-23 2E-27 180.7 15.0 180 52-233 377-561 (606)
40 3m19_A Variable lymphocyte rec 99.9 3.7E-22 1.3E-26 157.3 17.8 159 51-210 35-194 (251)
41 3t6q_A CD180 antigen; protein- 99.9 1.9E-22 6.4E-27 177.4 17.8 181 53-233 327-514 (606)
42 3o6n_A APL1; leucine-rich repe 99.9 2.7E-22 9.1E-27 167.7 17.7 180 51-232 45-285 (390)
43 1wwl_A Monocyte differentiatio 99.9 9.6E-24 3.3E-28 171.6 7.7 177 51-233 95-310 (312)
44 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-22 3.9E-27 185.3 15.5 192 40-233 14-218 (844)
45 3oja_B Anopheles plasmodium-re 99.9 3.2E-22 1.1E-26 176.0 17.7 182 51-233 51-292 (597)
46 2id5_A Lingo-1, leucine rich r 99.9 2.1E-22 7.3E-27 172.4 16.2 182 50-232 55-261 (477)
47 4eco_A Uncharacterized protein 99.9 1.9E-23 6.6E-28 185.0 9.1 190 39-233 192-416 (636)
48 2ft3_A Biglycan; proteoglycan, 99.9 4E-22 1.4E-26 163.2 16.2 180 50-232 77-307 (332)
49 2v9t_B SLIT homolog 2 protein 99.9 7.4E-22 2.5E-26 152.7 16.6 151 55-209 15-166 (220)
50 1xku_A Decorin; proteoglycan, 99.9 5.4E-22 1.8E-26 162.3 16.3 178 50-233 75-277 (330)
51 1wwl_A Monocyte differentiatio 99.9 3.5E-23 1.2E-27 168.2 8.7 153 51-209 149-310 (312)
52 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-21 4.9E-26 174.0 19.8 182 52-233 406-598 (680)
53 2z63_A TOLL-like receptor 4, v 99.9 2.4E-22 8.1E-27 175.4 13.6 183 51-234 347-533 (570)
54 2v70_A SLIT-2, SLIT homolog 2 99.9 1.7E-21 5.9E-26 150.6 15.7 152 55-210 15-168 (220)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-21 4.6E-26 170.8 16.7 159 73-234 350-512 (562)
56 3e6j_A Variable lymphocyte rec 99.9 3.8E-21 1.3E-25 149.6 17.4 158 36-209 15-173 (229)
57 1ziw_A TOLL-like receptor 3; i 99.9 4.3E-21 1.5E-25 171.0 19.8 181 52-233 382-574 (680)
58 4glp_A Monocyte differentiatio 99.9 1.8E-22 6.3E-27 163.8 9.8 177 52-233 92-308 (310)
59 4glp_A Monocyte differentiatio 99.9 2.6E-22 8.7E-27 163.0 10.5 154 50-209 144-308 (310)
60 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-21 4.6E-26 169.1 15.3 39 194-232 323-361 (520)
61 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-21 5.5E-26 168.6 15.3 177 52-234 303-483 (520)
62 3e6j_A Variable lymphocyte rec 99.9 8E-21 2.8E-25 147.7 17.8 153 78-234 21-174 (229)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.1E-21 7.1E-26 169.6 16.1 108 50-161 51-159 (562)
64 4ecn_A Leucine-rich repeat pro 99.9 2.5E-22 8.6E-27 182.4 10.5 189 39-233 434-658 (876)
65 3oja_A Leucine-rich immune mol 99.9 2.2E-22 7.7E-27 172.9 9.3 129 100-232 120-250 (487)
66 2z80_A TOLL-like receptor 2, v 99.9 2.7E-21 9.2E-26 159.6 15.3 181 45-233 28-212 (353)
67 2xot_A Amphoterin-induced prot 99.9 1.2E-21 4E-26 162.4 13.1 177 54-234 21-204 (361)
68 2o6s_A Variable lymphocyte rec 99.9 4.1E-21 1.4E-25 147.1 15.0 169 54-233 10-179 (208)
69 4g8a_A TOLL-like receptor 4; l 99.9 3.3E-21 1.1E-25 169.7 15.5 179 51-231 52-236 (635)
70 2z63_A TOLL-like receptor 4, v 99.9 2.6E-21 8.8E-26 168.8 14.5 178 51-230 28-211 (570)
71 1h6u_A Internalin H; cell adhe 99.9 3.3E-21 1.1E-25 156.3 13.8 169 50-233 62-231 (308)
72 1h6u_A Internalin H; cell adhe 99.9 6.1E-21 2.1E-25 154.8 14.6 168 51-233 41-209 (308)
73 3o53_A Protein LRIM1, AGAP0063 99.9 9.7E-22 3.3E-26 160.1 9.3 176 50-232 57-250 (317)
74 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-20 5.3E-25 171.3 17.6 85 52-137 74-161 (844)
75 1h6t_A Internalin B; cell adhe 99.9 7.9E-21 2.7E-25 152.9 13.4 168 51-233 46-214 (291)
76 2v9t_B SLIT homolog 2 protein 99.9 3.9E-20 1.3E-24 143.0 16.8 146 39-185 10-165 (220)
77 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-20 4.4E-25 163.9 15.5 180 39-232 3-185 (549)
78 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.8E-25 147.7 13.0 174 50-230 54-237 (239)
79 3oja_A Leucine-rich immune mol 99.8 3.6E-21 1.2E-25 165.4 11.1 177 52-233 35-228 (487)
80 4ezg_A Putative uncharacterize 99.8 7E-21 2.4E-25 144.7 9.6 154 72-233 40-195 (197)
81 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-19 3.4E-24 140.7 16.2 148 40-187 11-168 (220)
82 4g8a_A TOLL-like receptor 4; l 99.8 1E-19 3.5E-24 160.2 17.0 180 53-234 399-582 (635)
83 4fmz_A Internalin; leucine ric 99.8 1.6E-20 5.5E-25 154.4 11.0 171 51-232 155-346 (347)
84 4ay9_X Follicle-stimulating ho 99.8 7.1E-20 2.4E-24 151.0 14.7 193 40-233 9-216 (350)
85 1m9s_A Internalin B; cell inva 99.8 4.8E-20 1.6E-24 161.9 13.6 168 51-233 43-211 (605)
86 4fmz_A Internalin; leucine ric 99.8 8.9E-20 3.1E-24 149.9 12.9 175 49-233 130-325 (347)
87 4b8c_D Glucose-repressible alc 99.8 7.9E-22 2.7E-26 176.8 0.5 211 2-229 131-369 (727)
88 2xot_A Amphoterin-induced prot 99.8 4.8E-19 1.6E-23 146.7 16.0 152 79-233 21-177 (361)
89 1o6v_A Internalin A; bacterial 99.8 2E-19 6.8E-24 153.7 13.5 150 72-233 239-389 (466)
90 3bz5_A Internalin-J, INLJ; leu 99.8 2E-18 6.8E-23 147.2 19.3 163 51-233 64-247 (457)
91 4ezg_A Putative uncharacterize 99.8 1.7E-19 5.7E-24 137.0 11.2 150 51-209 44-195 (197)
92 1xeu_A Internalin C; cellular 99.8 1.1E-19 3.9E-24 144.1 10.7 163 54-232 22-185 (263)
93 1o6v_A Internalin A; bacterial 99.8 4.1E-19 1.4E-23 151.8 14.0 167 52-233 200-367 (466)
94 3bz5_A Internalin-J, INLJ; leu 99.8 2.7E-18 9.2E-23 146.4 18.9 143 50-209 41-184 (457)
95 1w8a_A SLIT protein; signaling 99.8 9.4E-19 3.2E-23 132.4 13.8 129 79-210 11-141 (192)
96 3cvr_A Invasion plasmid antige 99.8 1.4E-18 4.8E-23 151.4 16.4 170 41-233 49-244 (571)
97 2ast_B S-phase kinase-associat 99.8 3.5E-21 1.2E-25 157.6 -0.6 176 52-229 71-257 (336)
98 3cvr_A Invasion plasmid antige 99.8 5.8E-19 2E-23 153.8 13.1 135 77-233 60-194 (571)
99 3o53_A Protein LRIM1, AGAP0063 99.8 3.4E-20 1.2E-24 150.9 5.0 170 51-233 34-205 (317)
100 2ast_B S-phase kinase-associat 99.8 3.2E-21 1.1E-25 157.8 -1.2 182 50-233 92-285 (336)
101 1h6t_A Internalin B; cell adhe 99.8 5.7E-19 1.9E-23 142.1 11.7 163 56-233 29-192 (291)
102 2wfh_A SLIT homolog 2 protein 99.8 5.2E-18 1.8E-22 128.4 14.2 127 79-209 13-140 (193)
103 2ca6_A RAN GTPase-activating p 99.8 2.7E-21 9.2E-26 161.4 -5.9 182 51-233 94-317 (386)
104 1w8a_A SLIT protein; signaling 99.8 1E-17 3.5E-22 126.7 13.6 173 54-233 11-184 (192)
105 2ca6_A RAN GTPase-activating p 99.8 1.5E-20 5.1E-25 156.9 -3.0 161 73-233 91-288 (386)
106 2ell_A Acidic leucine-rich nuc 99.8 1.8E-18 6.1E-23 127.9 8.4 133 75-209 23-161 (168)
107 1m9s_A Internalin B; cell inva 99.8 3.4E-18 1.2E-22 150.2 11.1 165 54-233 24-189 (605)
108 2o6r_A Variable lymphocyte rec 99.7 4.5E-17 1.6E-21 121.4 15.2 129 79-210 10-139 (177)
109 3goz_A Leucine-rich repeat-con 99.7 3.2E-20 1.1E-24 153.7 -2.5 181 52-233 23-239 (362)
110 2ell_A Acidic leucine-rich nuc 99.7 7.1E-18 2.4E-22 124.7 10.4 130 52-185 25-160 (168)
111 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-17 2.2E-21 142.4 18.2 78 148-233 221-298 (622)
112 1jl5_A Outer protein YOPM; leu 99.7 9.4E-17 3.2E-21 136.8 18.5 140 52-209 132-271 (454)
113 1jl5_A Outer protein YOPM; leu 99.7 1.2E-16 4.2E-21 136.0 18.8 139 77-232 132-270 (454)
114 3goz_A Leucine-rich repeat-con 99.7 1.1E-19 3.7E-24 150.6 -1.2 178 55-233 2-210 (362)
115 2wfh_A SLIT homolog 2 protein 99.7 7.4E-17 2.5E-21 122.1 14.2 128 54-186 13-140 (193)
116 4b8c_D Glucose-repressible alc 99.7 8.1E-19 2.8E-23 157.4 2.8 173 50-232 223-404 (727)
117 1xeu_A Internalin C; cellular 99.7 5.7E-17 1.9E-21 128.5 13.0 146 51-210 41-187 (263)
118 2je0_A Acidic leucine-rich nuc 99.7 4.9E-18 1.7E-22 123.1 5.8 127 76-227 17-148 (149)
119 2o6r_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 117.6 14.0 115 75-189 27-141 (177)
120 2je0_A Acidic leucine-rich nuc 99.7 1.5E-17 5.1E-22 120.5 7.1 128 51-181 17-149 (149)
121 1dce_A Protein (RAB geranylger 99.7 2.9E-20 1E-24 162.3 -10.4 104 125-233 442-547 (567)
122 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-15 4.3E-20 134.2 18.2 153 36-209 18-195 (622)
123 4ay9_X Follicle-stimulating ho 99.7 1.1E-16 3.9E-21 131.8 10.6 161 50-211 53-218 (350)
124 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-19 5.4E-24 153.7 -7.9 161 73-233 224-412 (461)
125 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-17 1.9E-21 120.9 4.1 133 71-209 14-154 (176)
126 1z7x_W Ribonuclease inhibitor; 99.6 9E-19 3.1E-23 149.1 -6.8 36 53-89 87-126 (461)
127 3g39_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 110.5 12.6 107 101-210 10-117 (170)
128 1a9n_A U2A', U2A'; complex (nu 99.6 4.2E-16 1.4E-20 116.1 6.9 128 51-185 19-153 (176)
129 1ds9_A Outer arm dynein; leuci 99.6 1.8E-19 6.1E-24 137.0 -11.9 112 71-187 43-155 (198)
130 2r9u_A Variable lymphocyte rec 99.6 7.2E-15 2.5E-19 109.2 12.5 104 103-209 15-119 (174)
131 1dce_A Protein (RAB geranylger 99.6 6.5E-15 2.2E-19 128.6 11.8 151 70-226 403-567 (567)
132 3g39_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 105.1 12.3 105 54-162 12-116 (170)
133 1ds9_A Outer arm dynein; leuci 99.6 5E-18 1.7E-22 128.9 -9.7 153 74-233 16-186 (198)
134 3sb4_A Hypothetical leucine ri 99.6 3.9E-14 1.3E-18 115.6 12.2 79 51-130 49-154 (329)
135 2r9u_A Variable lymphocyte rec 99.5 7.7E-14 2.6E-18 103.6 12.3 104 54-161 15-118 (174)
136 3sb4_A Hypothetical leucine ri 99.5 4.4E-13 1.5E-17 109.3 11.5 176 52-232 26-310 (329)
137 2ifg_A High affinity nerve gro 99.5 3.6E-13 1.2E-17 110.5 10.6 104 104-209 12-117 (347)
138 3un9_A NLR family member X1; l 99.4 1.5E-15 5.2E-20 126.1 -8.7 159 52-210 73-254 (372)
139 2ifg_A High affinity nerve gro 99.4 2.8E-12 9.5E-17 105.2 10.4 102 57-162 14-117 (347)
140 3ogk_B Coronatine-insensitive 99.3 2.7E-14 9.3E-19 125.0 -4.3 84 53-137 140-233 (592)
141 3un9_A NLR family member X1; l 99.3 1.5E-15 5E-20 126.1 -12.7 159 75-233 71-253 (372)
142 3ogk_B Coronatine-insensitive 99.3 1.5E-13 5.3E-18 120.2 -2.5 79 51-131 164-250 (592)
143 4fdw_A Leucine rich hypothetic 99.2 3.5E-10 1.2E-14 94.6 16.3 172 52-231 158-357 (401)
144 4fdw_A Leucine rich hypothetic 99.2 6.6E-10 2.3E-14 93.0 15.7 171 52-229 136-333 (401)
145 2p1m_B Transport inhibitor res 99.2 4.1E-14 1.4E-18 123.9 -10.6 179 51-232 289-519 (594)
146 2p1m_B Transport inhibitor res 99.2 8.3E-13 2.8E-17 115.5 -3.7 107 51-158 105-221 (594)
147 2ra8_A Uncharacterized protein 99.1 3.2E-12 1.1E-16 105.5 -0.9 179 51-233 107-321 (362)
148 2ra8_A Uncharacterized protein 98.8 3.3E-10 1.1E-14 93.4 -0.3 174 51-230 139-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.6 1E-09 3.4E-14 82.1 -3.5 90 96-185 32-136 (185)
150 1io0_A Tropomodulin; LRR prote 98.5 3.7E-09 1.3E-13 79.0 -2.2 116 70-185 30-164 (185)
151 3rw6_A Nuclear RNA export fact 98.3 2.2E-07 7.4E-12 73.2 2.7 66 122-189 168-237 (267)
152 3rw6_A Nuclear RNA export fact 98.3 3E-07 1E-11 72.3 3.1 80 97-178 167-257 (267)
153 4fs7_A Uncharacterized protein 98.1 4.5E-05 1.5E-09 63.3 13.3 145 76-228 230-375 (394)
154 3e4g_A ATP synthase subunit S, 98.1 5.6E-07 1.9E-11 66.2 1.2 34 77-110 62-95 (176)
155 4fs7_A Uncharacterized protein 98.1 7.8E-05 2.7E-09 61.8 14.4 145 70-223 247-392 (394)
156 3e4g_A ATP synthase subunit S, 98.1 4.8E-07 1.6E-11 66.5 0.0 82 124-205 61-149 (176)
157 4h09_A Hypothetical leucine ri 98.1 0.00012 4E-09 60.3 14.2 37 144-180 282-318 (379)
158 4h09_A Hypothetical leucine ri 98.0 0.00013 4.5E-09 60.1 14.2 152 73-229 191-343 (379)
159 4gt6_A Cell surface protein; l 98.0 2.8E-05 9.6E-10 64.6 9.9 131 94-231 259-390 (394)
160 4gt6_A Cell surface protein; l 97.9 9.5E-05 3.2E-09 61.3 10.7 133 69-207 258-390 (394)
161 3rfe_A Platelet glycoprotein I 97.3 0.0006 2.1E-08 47.4 6.3 55 152-208 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 2.1E-05 7.2E-10 58.8 -2.3 86 97-182 38-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 4.4E-05 1.5E-09 57.1 -1.0 113 72-184 37-169 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0026 9.1E-08 44.1 6.1 56 104-161 12-68 (130)
165 2lz0_A Uncharacterized protein 77.6 8.4 0.00029 24.8 6.2 41 92-133 12-52 (100)
166 2lz0_A Uncharacterized protein 53.7 40 0.0014 21.5 6.5 38 119-157 15-52 (100)
167 3ox7_P MH027; urokinase-type p 21.3 33 0.0011 14.9 0.7 10 37-46 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.2e-36 Score=244.74 Aligned_cols=220 Identities=28% Similarity=0.493 Sum_probs=193.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCce--eeeEEeCCC---CCEEEEEcCCCCccc--ccCCCcCCC
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCA--WSGISCNDA---GRVIKISLPKIGLKG--TLHDFSFSS 74 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~--~~g~~~~~~---~~~~~L~l~~~~l~~--~~~~~~~~~ 74 (234)
++|++||++||+++. ++. .+++| .. +.++|. |.||.|... ++|+.|+++++.+.+ .+ +..+.+
T Consensus 5 ~~~~~aL~~~k~~~~-~~~-~l~~W-~~------~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~-~~~l~~ 74 (313)
T 1ogq_A 5 PQDKQALLQIKKDLG-NPT-TLSSW-LP------TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI-PSSLAN 74 (313)
T ss_dssp HHHHHHHHHHHHHTT-CCG-GGTTC-CT------TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC-CGGGGG
T ss_pred HHHHHHHHHHHHhcC-Ccc-cccCC-CC------CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc-ChhHhC
Confidence 679999999999995 444 68899 43 568898 999999864 789999999999998 77 889999
Q ss_pred CCCCCEEEccC-CccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEE
Q 046860 75 FPHLAYLDLSY-NELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVL 153 (234)
Q Consensus 75 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 153 (234)
+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 99999999995 88988899999999999999999999998899999999999999999999998899999999999999
Q ss_pred EcccCcCccCCCccCCCCC-CCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCcc
Q 046860 154 SLFFNHLNGSVPPSLGNLT-NLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 154 ~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l 231 (234)
++++|.+++.+|..+..++ +|++|++++|.+++.+|..+. ++ |+.|++++|.+++.+|..+..+++|+.|++++|.+
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 9999999988999998887 899999999999888887776 54 88888888887777777777777777777777766
Q ss_pred C
Q 046860 232 L 232 (234)
Q Consensus 232 ~ 232 (234)
+
T Consensus 234 ~ 234 (313)
T 1ogq_A 234 A 234 (313)
T ss_dssp C
T ss_pred e
Confidence 5
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=6.8e-33 Score=245.53 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCC-------CCCCCCCCCCCCCCCcee---eeEEeCCCCCEEEEEcCCCCcccccCCCcC
Q 046860 3 EEADALLKWKASLQSHNQSLLP-------SWPNATTNVSSKISPCAW---SGISCNDAGRVIKISLPKIGLKGTLHDFSF 72 (234)
Q Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~~~~~~~~c~~---~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~ 72 (234)
+|++||.++++++.+++|.... +| +. +.++|.| .||+|+..++|+.|+|+++++.|.+ +..+
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W-~~------~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l-p~~l 101 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANW-NF------NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV-PDAI 101 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCC-CC------SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE-CGGG
T ss_pred HHHHHHHHHHHHcCCCCcccCCcCCccCCCC-CC------CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC-ChHH
Confidence 6899999999999877776433 78 44 6889999 9999988889999999999999999 8899
Q ss_pred CCCCCCCEEEccCCc-----------------------------------------------------------------
Q 046860 73 SSFPHLAYLDLSYNE----------------------------------------------------------------- 87 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~----------------------------------------------------------------- 87 (234)
+++++|+.|++++|.
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 999999999999884
Q ss_pred -------------cccCCCccCCCCCCCcEEEeeccccccc-----------------CCccCc--CCCCCcEEEcccCc
Q 046860 88 -------------LFGTIPPQISNLTNLTTLYFGGDQFSGN-----------------IPPEVG--LMSHLELLHIDTNQ 135 (234)
Q Consensus 88 -------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~ 135 (234)
+++ +|..+.++++|++|++++|.+++. +|..+. .+++|++|++++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 334 777889999999999999999975 899888 99999999999999
Q ss_pred CCCCCCccccCCCCCcEEEcccCc-Ccc-CCCccCCCC------CCCceEEcccCcccccCCC--CCC-CCCCCeEeccc
Q 046860 136 LDGSIPPELGQLSSLVVLSLFFNH-LNG-SVPPSLGNL------TNLQQLILFSNNLSGSIPP--SLE-YPMLTTLNLDF 204 (234)
Q Consensus 136 ~~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~------~~L~~L~L~~n~l~~~~~~--~~~-~~~L~~L~l~~ 204 (234)
+.+.+|..++++++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+. +++|+.|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 998999999999999999999998 776 566555444 66666666666666 5555 444 66666666666
Q ss_pred CcccccCCccCCCCCCcCEEeccCCcc
Q 046860 205 NHFTSYLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 205 n~l~~~~~~~~~~~~~L~~L~l~~N~l 231 (234)
|.+++.+| .+..+++|+.|++++|.+
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred CcCccchh-hhCCCCCCCEEECCCCcc
Confidence 66665555 455555555555555544
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3e-31 Score=239.56 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=152.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCceeeeEEeCCCCCEEEEEcCCCCcccc---cCCC--------
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT---LHDF-------- 70 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~g~~~~~~~~~~~L~l~~~~l~~~---~~~~-------- 70 (234)
++|++||++||+++. ++. .+++| .. +.++|.|.||+|+ .++|+.|+++++.+.|. + +.
T Consensus 11 ~~~~~all~~k~~~~-~~~-~l~~W-~~------~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l-~~~l~~L~~L 79 (768)
T 3rgz_A 11 YREIHQLISFKDVLP-DKN-LLPDW-SS------NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAV-SSSLLSLTGL 79 (768)
T ss_dssp HHHHHHHHHHHTTCS-CTT-SSTTC-CT------TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHH-HHHTTTCTTC
T ss_pred HHHHHHHHHHHhhCC-Ccc-cccCC-CC------CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCcc-ChhHhccCcc
Confidence 579999999999997 555 79999 44 6789999999998 68999999999999886 4 33
Q ss_pred ---------------cCCCCCCCCEEEccCCccccCCCc--cCCCCCCCcEEEeecccccccCCccC-cCCCCCcEEEcc
Q 046860 71 ---------------SFSSFPHLAYLDLSYNELFGTIPP--QISNLTNLTTLYFGGDQFSGNIPPEV-GLMSHLELLHID 132 (234)
Q Consensus 71 ---------------~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~ 132 (234)
.+.++++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+ ..+++|++|+++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 455556666666666666555555 55666666666666666655444443 556666666666
Q ss_pred cCcCCCCCCcc---ccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccc
Q 046860 133 TNQLDGSIPPE---LGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFT 208 (234)
Q Consensus 133 ~n~~~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~ 208 (234)
+|.+++..|.. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.+|. +. +++|++|++++|.++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 66665544444 5566666666666666664433 25667777777777777766665 44 777777777777777
Q ss_pred ccCCccCCCCCCcCEEeccCCccC
Q 046860 209 SYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+.+|..+..+++|++|++++|.++
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCE
T ss_pred CcccHHHhcCCCCCEEECCCCccc
Confidence 777777777777778887777765
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.5e-31 Score=219.25 Aligned_cols=223 Identities=20% Similarity=0.275 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCceeeeEEeC---------CCCCEEEEEcCCCCcccccCCCcC
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCN---------DAGRVIKISLPKIGLKGTLHDFSF 72 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~g~~~~---------~~~~~~~L~l~~~~l~~~~~~~~~ 72 (234)
..|..||++||..+..++......|... .....++|.|.|+.|. ...+++.|+++++.++ .+ +..+
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~---~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l-p~~l 100 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQA---NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF-PDQA 100 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHH---TTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC-CSCG
T ss_pred chHHHHHHHHHHhccCCchhhhhhhccc---ccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc-Chhh
Confidence 3588999999999977776777888411 0126789999999984 2357888888888887 45 5556
Q ss_pred CCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccC------
Q 046860 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQ------ 146 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~------ 146 (234)
.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 66777778887777777 66777777777777777777777 66666666666666666666555555544432
Q ss_pred ---CCCCcEEEcccCcCccCCCcc-----------------------CCCCCCCceEEcccCcccccCCCCCC-CCCCCe
Q 046860 147 ---LSSLVVLSLFFNHLNGSVPPS-----------------------LGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTT 199 (234)
Q Consensus 147 ---l~~L~~L~l~~n~l~~~~~~~-----------------------~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~ 199 (234)
+++|++|++++|.++ .+|.. +..+++|++|++++|.+.+.+|..+. +++|+.
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 455555555555544 44444 44445555555555554444444444 555555
Q ss_pred EecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 200 LNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 200 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
|++++|.+.+.+|..+..+++|++|+|++|++.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 555555555555555555555555555555543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.9e-31 Score=238.23 Aligned_cols=221 Identities=21% Similarity=0.283 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCcee------------eeEEeCCCCCEEEEEcCCCCcccccCC
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAW------------SGISCNDAGRVIKISLPKIGLKGTLHD 69 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~------------~g~~~~~~~~~~~L~l~~~~l~~~~~~ 69 (234)
.+|++||++||+++.++ +|....-+.....++|.| .||.|+..++|+.|+|+++++.|.+ +
T Consensus 268 ~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i-p 340 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV-P 340 (876)
T ss_dssp HHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE-C
T ss_pred hHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC-c
Confidence 46999999999999644 672210000012233999 9999998889999999999999999 8
Q ss_pred CcCCCCCCCCEEEc-cCCccccC---------------------------------------------------------
Q 046860 70 FSFSSFPHLAYLDL-SYNELFGT--------------------------------------------------------- 91 (234)
Q Consensus 70 ~~~~~l~~L~~L~l-~~n~l~~~--------------------------------------------------------- 91 (234)
..++++++|+.|++ ++|.+.|.
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 89999999999999 66654332
Q ss_pred -------------------CCccCCCCCCCcEEEeecccccc-----------------cCCccCc--CCCCCcEEEccc
Q 046860 92 -------------------IPPQISNLTNLTTLYFGGDQFSG-----------------NIPPEVG--LMSHLELLHIDT 133 (234)
Q Consensus 92 -------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~ 133 (234)
+|..+.++++|++|++++|.+++ .+|..+. .+++|++|++++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 67788899999999999999997 3888877 999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCc-Ccc-CCCccCC-------CCCCCceEEcccCcccccCCC--CCC-CCCCCeEe
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNH-LNG-SVPPSLG-------NLTNLQQLILFSNNLSGSIPP--SLE-YPMLTTLN 201 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~--~~~-~~~L~~L~ 201 (234)
|.+.+.+|..|..+++|++|++++|. +++ .+|..+. .+++|++|++++|.++ .+|. .+. +++|+.|+
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 99988999999999999999999997 776 5565433 3347777777777777 5565 454 66777777
Q ss_pred cccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 202 LDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 202 l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+++|.++ .+| .++.+++|+.|+|++|.++
T Consensus 580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CTTSCCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred CCCCCcc-cch-hhcCCCcceEEECcCCccc
Confidence 7777766 455 5666666777777666654
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=2.4e-27 Score=189.06 Aligned_cols=182 Identities=23% Similarity=0.222 Sum_probs=155.6
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
.++.|++++|.+++.. +..|.++++|++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 5788888888887554 668889999999999999998555556788999999999999998655566788999999999
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccccc
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99999976667788999999999999999866556688999999999999999977666666 89999999999999987
Q ss_pred CCccCCCCCCcCEEeccCCccCCC
Q 046860 211 LPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 211 ~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
.+..+..+++|+.|++++|.+.++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 677788999999999999998764
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.95 E-value=1.6e-26 Score=182.33 Aligned_cols=191 Identities=21% Similarity=0.158 Sum_probs=166.0
Q ss_pred CCceeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCC
Q 046860 38 SPCAWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIP 117 (234)
Q Consensus 38 ~~c~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 117 (234)
.++.|.|..|.. ..+.++++++.++. + |..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLDS-V-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCSS-C-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCccc-c-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 456888988853 35689999999874 4 43343 689999999999998888889999999999999999997777
Q ss_pred ccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCC
Q 046860 118 PEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPM 196 (234)
Q Consensus 118 ~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~ 196 (234)
..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 7789999999999999999966667789999999999999999966666788999999999999999977776676 999
Q ss_pred CCeEecccCcccccCCccCCCCCCcCEEeccCCccCCC
Q 046860 197 LTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 197 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
|+.|++++|.+++..+..+..+++|+.|++++|+|+++
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999987777899999999999999999864
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.7e-26 Score=180.94 Aligned_cols=180 Identities=22% Similarity=0.172 Sum_probs=106.1
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeeccc-ccccCCccCcCCCCCcEEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQ-FSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ 130 (234)
.++.|+++++.+++.. +..+..+++|++|++++|.+++..+..|..+++|++|++++|. +....|..+..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 5666666666665443 4556666666666666666665555566666666666666665 5533355556666666666
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 666666644455555666666666666666544444455566666666666666544444344 5555566665555555
Q ss_pred cCCccCCCCCCcCEEeccCCccC
Q 046860 210 YLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
..|..+..+++|+.|++++|.++
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCS
T ss_pred cCHhHccCcccccEeeCCCCcCC
Confidence 55555555555555555555554
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.1e-27 Score=192.29 Aligned_cols=182 Identities=22% Similarity=0.330 Sum_probs=121.7
Q ss_pred CCEEEEEcCC-CCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 51 GRVIKISLPK-IGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 51 ~~~~~L~l~~-~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
.+++.|++++ |.+.+.+ +..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 4577777774 7776666 6667777777777777777766666667777777777777777766666666666777777
Q ss_pred EcccCcCCCCCCccccCCC-CCcEEEcccCcCccCC-----------------------CccCCCCCCCceEEcccCccc
Q 046860 130 HIDTNQLDGSIPPELGQLS-SLVVLSLFFNHLNGSV-----------------------PPSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~-~L~~L~l~~n~l~~~~-----------------------~~~~~~~~~L~~L~L~~n~l~ 185 (234)
++++|.+++.+|..+..++ .|++|++++|.+.+.+ |..+..+++|++|++++|.++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 7777766666666666655 5666666666555444 444555566666666666665
Q ss_pred ccCCCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 186 GSIPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 186 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+.++....+++|++|++++|.+++.+|..+..+++|+.|++++|+|++
T Consensus 235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 444442226777777777777777777777777888888888887753
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=9.5e-27 Score=210.21 Aligned_cols=181 Identities=30% Similarity=0.480 Sum_probs=139.1
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
.++.|++++|.+++.+ +..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 467 ~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 467 TLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 4666677777666666 666777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCcCCCCCCccc-------------------------------------------------------------------
Q 046860 132 DTNQLDGSIPPEL------------------------------------------------------------------- 144 (234)
Q Consensus 132 ~~n~~~~~~p~~l------------------------------------------------------------------- 144 (234)
++|.+++.+|..+
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 7777765555432
Q ss_pred ---cCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCC
Q 046860 145 ---GQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSM 220 (234)
Q Consensus 145 ---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~ 220 (234)
..+++|++|++++|.+++.+|..++.++.|+.|+|++|.++|.+|..++ +++|+.|++++|.+++.+|..+..++.
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 2345677888888888888888888888888888888888888888877 888888888888888888888888888
Q ss_pred cCEEeccCCccCC
Q 046860 221 CCRFSLASLVFLD 233 (234)
Q Consensus 221 L~~L~l~~N~l~~ 233 (234)
|++|+|++|++++
T Consensus 706 L~~L~ls~N~l~g 718 (768)
T 3rgz_A 706 LTEIDLSNNNLSG 718 (768)
T ss_dssp CSEEECCSSEEEE
T ss_pred CCEEECcCCcccc
Confidence 8888888888764
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.6e-26 Score=181.26 Aligned_cols=184 Identities=20% Similarity=0.177 Sum_probs=166.0
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCc-cccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNE-LFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLEL 128 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 128 (234)
..+++.|++++|.+++.. +..+..+++|+.|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 55 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 457999999999998766 7889999999999999997 77666888999999999999999999777788899999999
Q ss_pred EEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcc
Q 046860 129 LHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHF 207 (234)
Q Consensus 129 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l 207 (234)
|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+. +++|+.|++++|.+
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 99999999966566688999999999999999966666799999999999999999988888887 99999999999999
Q ss_pred cccCCccCCCCCCcCEEeccCCccCCC
Q 046860 208 TSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 208 ~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
++..+..+..+++|+.|++++|.++++
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CcCCHHHcccCcccCEEeccCCCccCC
Confidence 986667789999999999999999864
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.5e-26 Score=185.31 Aligned_cols=177 Identities=21% Similarity=0.276 Sum_probs=143.8
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCC---------CCCCcEEEeecccccccCCccCcC
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISN---------LTNLTTLYFGGDQFSGNIPPEVGL 122 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~~~~ 122 (234)
+++.|++++|.++ .+ +..+.++++|+.|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..
T Consensus 128 ~L~~L~Ls~n~l~-~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~ 204 (328)
T 4fcg_A 128 GLETLTLARNPLR-AL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204 (328)
T ss_dssp TCSEEEEESCCCC-CC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred CCCEEECCCCccc-cC-cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence 4566666666655 44 445666666666666666555555555443 677777777777777 67777888
Q ss_pred CCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEe
Q 046860 123 MSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLN 201 (234)
Q Consensus 123 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~ 201 (234)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+. +++|+.|+
T Consensus 205 l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 889999999999988 5777888999999999999999889999999999999999999999989998888 99999999
Q ss_pred cccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 202 LDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 202 l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+++|.+.+.+|..++.+++|+.+++..|.+.
T Consensus 284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999987654
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-25 Score=181.88 Aligned_cols=194 Identities=22% Similarity=0.208 Sum_probs=122.4
Q ss_pred CceeeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccC--CCcc-----------
Q 046860 39 PCAWSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGT--IPPQ----------- 95 (234)
Q Consensus 39 ~c~~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~----------- 95 (234)
.|.|.++.|.. ..+++.|++++|.+++ +++..+.++++|+.|++++|.++.. .+..
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 37899999863 2378999999999874 4355678899999999998887522 1333
Q ss_pred ------------CCCCCCCcEEEeecccccccCC-ccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCcc
Q 046860 96 ------------ISNLTNLTTLYFGGDQFSGNIP-PEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNG 162 (234)
Q Consensus 96 ------------~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 162 (234)
+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 3344445555555555542222 244555566666666665554555555566666666666666654
Q ss_pred -CCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 163 -SVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 163 -~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
..|..+..+++|++|++++|.+++..|..+. +++|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 3555666666666666666666655555555 6666777777776666555556666777777777776654
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.1e-24 Score=172.22 Aligned_cols=179 Identities=24% Similarity=0.213 Sum_probs=157.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|+++++.+.. ...+..+++|+.|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 468999999999874 3457889999999999999985 3 4788999999999999999966666788999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 999999966666788999999999999999976666788999999999999999977776666 8999999999999999
Q ss_pred cCCccCCCCCCcCEEeccCCccCCC
Q 046860 210 YLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
..+..+..+++|+.|++++|.++++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCHHHHhCCcCCCEEEccCCCcccc
Confidence 8887789999999999999998763
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.1e-24 Score=172.83 Aligned_cols=179 Identities=23% Similarity=0.161 Sum_probs=158.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
..++.|++++|.+++.. +..+..+++|+.|++++|.+++..+ ...+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 57899999999998766 7789999999999999999985433 378999999999999998 7888889999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|+++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. +++|+.|++++|.++.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 999999966667899999999999999999976667788999999999999999966666666 9999999999999985
Q ss_pred cCCccCCCCCCcCEEeccCCccCCC
Q 046860 210 YLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
+|..+..++.|+.|+|++|.+.++
T Consensus 187 -ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 187 -IPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp -CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred -cChhhcccccCCeEEeCCCCccCc
Confidence 777788889999999999999764
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.6e-24 Score=173.11 Aligned_cols=182 Identities=25% Similarity=0.240 Sum_probs=127.0
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
.++.|++++|.+++.. +..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccC-HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4777777777776544 556677777777777777776555556677777777777777776555566666777777777
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccCcCccC-CCccCCCCCCCceEEcccCcccccC----------------------
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFNHLNGS-VPPSLGNLTNLQQLILFSNNLSGSI---------------------- 188 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~---------------------- 188 (234)
++|.+....+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 77776644444566667777777777766642 4666666667777766666665432
Q ss_pred ------CCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCCC
Q 046860 189 ------PPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 189 ------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
+..+...+|+.|++++|.+++..+..+..+++|+.|++++|+++++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 2223344788999999999886666778999999999999999864
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1e-24 Score=176.63 Aligned_cols=183 Identities=19% Similarity=0.183 Sum_probs=161.5
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCC-ccCCCCCCCcEEEeecccccccCCccCcCCCCCcE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIP-PQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLEL 128 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 128 (234)
..+++.|++++|.+.+ + +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 77 ~~~L~~L~Ls~n~i~~-l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT-M-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSCCCEEECCSCSEEE-E-EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccCEEECCCCcccc-C-hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 3568888888888764 4 4568889999999999999985544 57889999999999999999788888999999999
Q ss_pred EEcccCcCCC-CCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCc
Q 046860 129 LHIDTNQLDG-SIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNH 206 (234)
Q Consensus 129 L~l~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 206 (234)
|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. +++|+.|++++|.
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 9999999985 5788899999999999999999987788999999999999999999976665666 8999999999999
Q ss_pred ccccCCccCCCCC-CcCEEeccCCccCCC
Q 046860 207 FTSYLPHNVCRGS-MCCRFSLASLVFLDG 234 (234)
Q Consensus 207 l~~~~~~~~~~~~-~L~~L~l~~N~l~~~ 234 (234)
+++..|..+..++ +|++|++++|.|+++
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9999898898885 999999999999864
No 18
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.7e-24 Score=168.27 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=156.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCc-cccCCCccCCCCCCCcEEEeec-ccccccCCccCcCCCCCcE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNE-LFGTIPPQISNLTNLTTLYFGG-DQFSGNIPPEVGLMSHLEL 128 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~ 128 (234)
..++.|++++|.+++.. +..|..+++|+.|++++|. ++...+..|..+++|++|++++ |.++...+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 47999999999998655 7789999999999999997 8766666889999999999998 9999666678889999999
Q ss_pred EEcccCcCCCCCCccccCCCCCc---EEEcccC-cCccCCCccCCCCCCCc-eEEcccCcccccCCCCCCCCCCCeEecc
Q 046860 129 LHIDTNQLDGSIPPELGQLSSLV---VLSLFFN-HLNGSVPPSLGNLTNLQ-QLILFSNNLSGSIPPSLEYPMLTTLNLD 203 (234)
Q Consensus 129 L~l~~n~~~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 203 (234)
|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.++...+..+..++|+.|+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 9999999994 776 88888888 9999999 89866666799999999 9999999999544444447789999999
Q ss_pred cCc-ccccCCccCCCC-CCcCEEeccCCccCC
Q 046860 204 FNH-FTSYLPHNVCRG-SMCCRFSLASLVFLD 233 (234)
Q Consensus 204 ~n~-l~~~~~~~~~~~-~~L~~L~l~~N~l~~ 233 (234)
+|. +++..+..+..+ ++|+.|++++|+|+.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 995 988777788899 999999999999874
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=8.8e-24 Score=180.05 Aligned_cols=189 Identities=17% Similarity=0.189 Sum_probs=136.4
Q ss_pred eeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeeccc
Q 046860 42 WSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQ 111 (234)
Q Consensus 42 ~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (234)
|..+.|.. ..+++.|+|++|.+++.. +..|.++++|+.|++++|.+++..+..|..+++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 56778853 236899999999998766 7889999999999999999987777889999999999999999
Q ss_pred ccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcc-------------------------cCcCccCCCc
Q 046860 112 FSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLF-------------------------FNHLNGSVPP 166 (234)
Q Consensus 112 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~-------------------------~n~l~~~~~~ 166 (234)
++...+..+..+++|++|++++|.+....+..|..+++|++|+++ +|.++ .+|
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-
Confidence 985555668889999999999998874434345555555555554 44444 222
Q ss_pred cCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 167 SLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 167 ~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.+..+++|++|++++|.+++..|..+. +++|+.|++++|.+++..+..+..+++|+.|+|++|+|++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 244555566666666666655555555 6667777777777666666666777777777777777653
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.6e-23 Score=165.66 Aligned_cols=193 Identities=20% Similarity=0.172 Sum_probs=168.1
Q ss_pred CCCceeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccC
Q 046860 37 ISPCAWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNI 116 (234)
Q Consensus 37 ~~~c~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 116 (234)
.+.|.|.|+.|......+.++++++.++. + |..+. +.++.|++++|.+++..+..|..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-I-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-C-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-c-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36799999999766678899999999984 4 44332 68999999999998766678999999999999999999554
Q ss_pred CccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CC
Q 046860 117 PPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YP 195 (234)
Q Consensus 117 p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~ 195 (234)
+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. ++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55578899999999999999966566788999999999999999977777889999999999999999976666666 99
Q ss_pred CCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 196 MLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 196 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+|+.|++++|.+++..+..+..+++|++|++++|++++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 99999999999999777778999999999999999874
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=182.71 Aligned_cols=180 Identities=23% Similarity=0.162 Sum_probs=152.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
..++.|++++|.+++.. +..|.++++|++|++++|.+++..|.+|..+++|++|++++|.++...+..|..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 46899999999998766 78899999999999999999877788999999999999999999855555678899999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.+....|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 999999877788889999999999999999877788888999999999999988865554455 7888888888888887
Q ss_pred cCCccCCCCCCcCEEeccCCcc
Q 046860 210 YLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l 231 (234)
..+..+..+++|+.|++++|.+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTT
T ss_pred eChhhcccCcccceeeCCCCcc
Confidence 6666777777777777777654
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=7e-24 Score=180.46 Aligned_cols=151 Identities=23% Similarity=0.273 Sum_probs=94.6
Q ss_pred CCCCceeee--EEeCC---------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCC-CccCCCCCCCc
Q 046860 36 KISPCAWSG--ISCND---------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTI-PPQISNLTNLT 103 (234)
Q Consensus 36 ~~~~c~~~g--~~~~~---------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 103 (234)
+...|.|.+ +.|.. ..+++.|++++|.+++.. +..+.++++|++|++++|.+.+.+ +..|..+++|+
T Consensus 4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~ 82 (455)
T 3v47_A 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82 (455)
T ss_dssp ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC
T ss_pred ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCC-hhHhccCccccEEECcCCcccceECcccccccccCC
Confidence 334566555 66642 145788888888877655 666777777777777777665333 45567777777
Q ss_pred EEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCcc--ccCCCCCcEEEcccCcCccCCCcc-CCCCCCCceEEcc
Q 046860 104 TLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPE--LGQLSSLVVLSLFFNHLNGSVPPS-LGNLTNLQQLILF 180 (234)
Q Consensus 104 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~L~ 180 (234)
+|++++|.+++..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|+++
T Consensus 83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 7777777776555666666777777777777666433333 556666666666666666544443 5555666666666
Q ss_pred cCccccc
Q 046860 181 SNNLSGS 187 (234)
Q Consensus 181 ~n~l~~~ 187 (234)
+|.+++.
T Consensus 163 ~n~l~~~ 169 (455)
T 3v47_A 163 FNKVKSI 169 (455)
T ss_dssp TCCBSCC
T ss_pred CCccccc
Confidence 6555543
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.8e-23 Score=177.52 Aligned_cols=181 Identities=20% Similarity=0.200 Sum_probs=126.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCC-------
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLM------- 123 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l------- 123 (234)
.+++.|+|++|.+++.. +..|.++++|+.|++++|.++...+..|..+++|++|++++|.++...+..+..+
T Consensus 88 ~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 46889999999887654 6778888888888888888885555678888888888888888774444344444
Q ss_pred ------------------CCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccc
Q 046860 124 ------------------SHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 124 ------------------~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 185 (234)
++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 44555555555554 333 2455566666666666666555666777777777777777777
Q ss_pred ccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCCC
Q 046860 186 GSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 186 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
+..+..+. +++|+.|++++|.+++..+..+..+++|+.|+|++|.+.+|
T Consensus 245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 66666666 77777777777777776666667777777888887777654
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=176.97 Aligned_cols=189 Identities=21% Similarity=0.181 Sum_probs=139.7
Q ss_pred eeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeeccc
Q 046860 42 WSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQ 111 (234)
Q Consensus 42 ~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (234)
|..+.|.. ...++.|+|++|.+++.. +..|.++++|+.|++++|.++...+..|..+++|++|++++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEEC-TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeC-HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 56788853 246899999999998766 7889999999999999999987777889999999999999999
Q ss_pred ccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccc-------------------------CcCccCCCc
Q 046860 112 FSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFF-------------------------NHLNGSVPP 166 (234)
Q Consensus 112 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~-------------------------n~l~~~~~~ 166 (234)
++...+..+..+++|++|++++|.+....+..|..+++|++|++++ |.++ .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 9955556789999999999999998854444555555555555555 4443 223
Q ss_pred cCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 167 SLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 167 ~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.+..+++|++|++++|.+++..|..+. +++|+.|++++|.+++..+..|..+++|+.|+|++|+|++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 244455566666666666655555555 6666777777777666666666777777777777777653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.2e-23 Score=179.10 Aligned_cols=119 Identities=22% Similarity=0.158 Sum_probs=87.2
Q ss_pred CCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-C
Q 046860 116 IPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-Y 194 (234)
Q Consensus 116 ~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~ 194 (234)
.|..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+. +
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 344555666777777777777765566677777777777777777766666777777788888888877777676666 7
Q ss_pred CCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCCC
Q 046860 195 PMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 195 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
++|++|++++|.+++..+..+..+++|++|++++|+++++
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 7888888888888776556667788888888888887764
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.5e-24 Score=168.56 Aligned_cols=173 Identities=18% Similarity=0.118 Sum_probs=138.0
Q ss_pred EEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCc
Q 046860 56 ISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQ 135 (234)
Q Consensus 56 L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 135 (234)
++..+..++ .+ |..+ .++|++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~i-p~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SC-CSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-cc-CCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344455554 23 3333 2579999999999987667789999999999999999997667789999999999999999
Q ss_pred CCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccccc-CCCCCC-CCCCCeEecccCcccccCCc
Q 046860 136 LDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGS-IPPSLE-YPMLTTLNLDFNHFTSYLPH 213 (234)
Q Consensus 136 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~-~~~L~~L~l~~n~l~~~~~~ 213 (234)
+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+. +++|+.|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9977778899999999999999999976666799999999999999999864 477777 89999999999999876555
Q ss_pred cCCCCCCcC----EEeccCCccC
Q 046860 214 NVCRGSMCC----RFSLASLVFL 232 (234)
Q Consensus 214 ~~~~~~~L~----~L~l~~N~l~ 232 (234)
.+..+++|+ .|++++|.++
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCC
T ss_pred HhhhhhhccccceeeecCCCccc
Confidence 554443333 4555555443
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.9e-23 Score=170.05 Aligned_cols=189 Identities=22% Similarity=0.257 Sum_probs=127.6
Q ss_pred CceeeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEee
Q 046860 39 PCAWSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFG 108 (234)
Q Consensus 39 ~c~~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (234)
.|.|..+.|.. ...++.|++++|.+++.. +..+.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 36899988852 236899999999998665 7789999999999999999997778899999999999999
Q ss_pred cccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCcc--CCC---------------------
Q 046860 109 GDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNG--SVP--------------------- 165 (234)
Q Consensus 109 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~--------------------- 165 (234)
+|.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.++. ..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence 99988 5665443 677777777777774444456667777777777666531 222
Q ss_pred -----------------------ccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCc
Q 046860 166 -----------------------PSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMC 221 (234)
Q Consensus 166 -----------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L 221 (234)
..+..+++|++|++++|.+++..+..+. +++|+.|++++|.++. +|..+..+++|
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L 266 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLL 266 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTC
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChhhhcCccC
Confidence 2334444445555555554443333333 4555555555555542 44445555555
Q ss_pred CEEeccCCccC
Q 046860 222 CRFSLASLVFL 232 (234)
Q Consensus 222 ~~L~l~~N~l~ 232 (234)
+.|++++|+|+
T Consensus 267 ~~L~l~~N~l~ 277 (332)
T 2ft3_A 267 QVVYLHTNNIT 277 (332)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 55555555554
No 28
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.9e-23 Score=166.39 Aligned_cols=179 Identities=25% Similarity=0.227 Sum_probs=156.0
Q ss_pred CCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCc
Q 046860 48 NDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLE 127 (234)
Q Consensus 48 ~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 127 (234)
....+++.++++++.++. + +..+ .+.++.|++++|.+++..+..|..+++|++|++++|.+++. +. ...+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~-i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-L-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-C-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCC
T ss_pred cccCCccEEECCCCCCCc-C-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCC
Confidence 344568999999999974 4 3333 36899999999999877788899999999999999999854 33 27899999
Q ss_pred EEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCc
Q 046860 128 LLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNH 206 (234)
Q Consensus 128 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 206 (234)
+|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+. +++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999999 7888889999999999999999976667899999999999999999977777766 9999999999999
Q ss_pred ccccCCccCCCCCCcCEEeccCCccCC
Q 046860 207 FTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 207 l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++...+..+..+++|+.|+|++|+|+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 998666777899999999999999863
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=180.09 Aligned_cols=195 Identities=18% Similarity=0.160 Sum_probs=162.8
Q ss_pred CCCCceeeeEEeCC------------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCc
Q 046860 36 KISPCAWSGISCND------------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLT 103 (234)
Q Consensus 36 ~~~~c~~~g~~~~~------------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 103 (234)
....|.|.++ |+. ..+++.|++++|.+++.. +..+.++++|+.|++++|.+++..+..|..+++|+
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4567888886 531 237999999999998654 66899999999999999999977788899999999
Q ss_pred EEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCc--cccCCCCCcEEEcccC-cCccCCCccCCCCCCCceEEcc
Q 046860 104 TLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPP--ELGQLSSLVVLSLFFN-HLNGSVPPSLGNLTNLQQLILF 180 (234)
Q Consensus 104 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~ 180 (234)
+|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++| .+....+..+..+++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999999433344888999999999999998 4554 6889999999999999 4665667789999999999999
Q ss_pred cCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 181 SNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 181 ~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+|.+++..|..+. +++|++|++++|.+....+..+..+++|+.|++++|.+++
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 9999988888887 8999999999999866433344568899999999998875
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7.2e-24 Score=186.49 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=52.2
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHID 132 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 132 (234)
++.|++++|.+++.. +..|..+++|+.|++++|.+++..|..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 77 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 444444444444333 3344555555555555555544444444555555555555555542222223445555555555
Q ss_pred cCcCCCCCCccccCCCCCcEEEcccCcCc
Q 046860 133 TNQLDGSIPPELGQLSSLVVLSLFFNHLN 161 (234)
Q Consensus 133 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 161 (234)
+|.+++..|..|..+++|++|++++|.++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 55555444444555555555555555444
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=3.2e-23 Score=176.57 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCc-----------
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPP----------- 118 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~----------- 118 (234)
..+++.|+|++|.+++.. +..|.++++|+.|++++|.++...+..|..+++|++|++++|.++...+.
T Consensus 98 l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 356888899998887655 77888888888888888888766666677888888888888877643332
Q ss_pred --------------cCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcc
Q 046860 119 --------------EVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNL 184 (234)
Q Consensus 119 --------------~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 184 (234)
.+..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 2455677777777777777 344 477889999999999999988888999999999999999999
Q ss_pred cccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCCC
Q 046860 185 SGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 185 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
++..+..+. +++|+.|++++|.+++..+..+..+++|+.|+|++|.+.+|
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 988888887 99999999999999987778888999999999999998875
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=3.9e-23 Score=169.10 Aligned_cols=191 Identities=19% Similarity=0.278 Sum_probs=132.2
Q ss_pred CCceeeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEe
Q 046860 38 SPCAWSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYF 107 (234)
Q Consensus 38 ~~c~~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 107 (234)
..|.|..+.|.. ...++.|++++|.+++.. +..+.++++|++|++++|.+++..|..|..+++|++|++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 346888888852 246899999999998765 778999999999999999999777889999999999999
Q ss_pred ecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCcc--CCCccCCCCCCCce---------
Q 046860 108 GGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNG--SVPPSLGNLTNLQQ--------- 176 (234)
Q Consensus 108 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~--------- 176 (234)
++|.++ .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999988 5565443 567777777777664444455666666666666666542 33444444545554
Q ss_pred ------------EEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 177 ------------LILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 177 ------------L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
|++++|.+++..+..+. +++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 45555555444444444 566666666666666655555666666666666666654
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.9e-23 Score=159.11 Aligned_cols=176 Identities=22% Similarity=0.239 Sum_probs=147.8
Q ss_pred CCceeeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEe
Q 046860 38 SPCAWSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYF 107 (234)
Q Consensus 38 ~~c~~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 107 (234)
-.|.|.++.|.. ..+++.|++++|.+++.. +..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 347899999963 236899999999998654 667889999999999999998666666789999999999
Q ss_pred ecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccccc
Q 046860 108 GGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGS 187 (234)
Q Consensus 108 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 187 (234)
++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 99999955555678899999999999999965555688899999999999999966666688999999999999977643
Q ss_pred CCCCCCCCCCCeEecccCcccccCCccCCCCCC
Q 046860 188 IPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSM 220 (234)
Q Consensus 188 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 220 (234)
++.|+.|+++.|.+++.+|..++.++.
T Consensus 164 ------~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 ------CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------CCCHHHHHHHHHhCCceeeccCccccC
Confidence 567899999999999999988876654
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.2e-23 Score=174.31 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=49.6
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCc-cCcCCCCCcEEEc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPP-EVGLMSHLELLHI 131 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l 131 (234)
++.|++++|.+++.. +..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|. .+..+++|++|++
T Consensus 71 L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 71 VELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 444444444443322 334444455555555555444433444444555555555555544 2222 2344455555555
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccCcCc
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFNHLN 161 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 161 (234)
++|.+.+..|..+..+++|++|++++|.++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 555544433444444555555555555443
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=5e-24 Score=185.36 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=146.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|++++|.+++.. +..+.++++|++|++++|.+++..|.+|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 47999999999998766 78899999999999999999987888999999999999999999966555689999999999
Q ss_pred cccCcCCC-CCCccccCCCCCcEEEcccCcCccCCC-ccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcc
Q 046860 131 IDTNQLDG-SIPPELGQLSSLVVLSLFFNHLNGSVP-PSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHF 207 (234)
Q Consensus 131 l~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l 207 (234)
+++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+. +++|+.|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999985 356788999999999999998444444 6789999999999999999988887776 66666666666665
Q ss_pred cccCCccCCCCCCcCEEeccCCccCC
Q 046860 208 TSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 208 ~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.......+..+++|++|++++|.+++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccchhhHhhcccccEEEccCCcccc
Confidence 43222222345666666666665543
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=6.2e-23 Score=180.54 Aligned_cols=180 Identities=23% Similarity=0.220 Sum_probs=160.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|++++|.+++.. +..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|..+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 57999999999998766 77899999999999999999987788999999999999999999977788999999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCcc-CCCccCCCCCCCceEEcccCcccccCCCCCC-CCC----CCeEeccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNG-SVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPM----LTTLNLDF 204 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~----L~~L~l~~ 204 (234)
+++|.+.+..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+. +++ +..+++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999996666789999999999999999986 5799999999999999999999988787776 544 45899999
Q ss_pred CcccccCCccCCCCCCcCEEeccCCccC
Q 046860 205 NHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 205 n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
|.+++..+..+... +|+.|++++|.++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNS 217 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccc
Confidence 99998666555444 8999999999875
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.6e-23 Score=164.39 Aligned_cols=173 Identities=21% Similarity=0.180 Sum_probs=147.9
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
..+++.|++++|.+++ ...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCC---CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCC---chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 4579999999999986 2478899999999999999997777778999999999999999996666668899999999
Q ss_pred EcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccc
Q 046860 130 HIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFT 208 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~ 208 (234)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+.
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 9999999966666678999999999999999977777788999999999999999987777777 999999999999876
Q ss_pred ccCCccCCCCCCcCEEeccCCccC
Q 046860 209 SYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+. +++|+.|++..|.++
T Consensus 219 ~~-------~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 219 CT-------CPGIRYLSEWINKHS 235 (272)
T ss_dssp CC-------TTTTHHHHHHHHHTG
T ss_pred cc-------CcHHHHHHHHHHhCC
Confidence 53 445666666666554
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3.7e-23 Score=181.92 Aligned_cols=178 Identities=17% Similarity=0.107 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCC-ccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIP-PQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
++.|++++|.+++ + +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 378 L~~L~L~~n~l~~-~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 378 LRHLDLSFNGAII-M-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCEEECCSCSEEE-E-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccEeECCCCcccc-c-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 4444444444432 2 2444555555555555555554433 34555555555555555555444555555555555555
Q ss_pred ccCcCCC-CCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 132 DTNQLDG-SIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 132 ~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. +++|+.|++++|.++.
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 5555553 2444555555555555555555555555555555555555555555555454444 5555555555555553
Q ss_pred cCCccCCCCC-CcCEEeccCCccCC
Q 046860 210 YLPHNVCRGS-MCCRFSLASLVFLD 233 (234)
Q Consensus 210 ~~~~~~~~~~-~L~~L~l~~N~l~~ 233 (234)
+|..+..++ +|+.|++++|++++
T Consensus 536 -~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 536 -SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp -EESCGGGSCTTCCEEECCSCCCCC
T ss_pred -cCHhHhhhcccCcEEEccCCCccc
Confidence 333355544 35666666665554
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=5.8e-23 Score=180.69 Aligned_cols=180 Identities=21% Similarity=0.176 Sum_probs=95.0
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCc-cCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPP-QISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
+++.|++++|.+.+.. +..+..+++|+.|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 377 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TCCEEECCSCSCEEEC-TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCcCC-HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 4555555555554443 44455555555555555555433332 245555555555555555544444455555555555
Q ss_pred cccCcCCC---CCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCc
Q 046860 131 IDTNQLDG---SIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNH 206 (234)
Q Consensus 131 l~~n~~~~---~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 206 (234)
+++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. ++.| .|++++|.
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 55555543 1123345555555555555555544455555555555555555555555554444 5555 55555555
Q ss_pred ccccCCccCCCCCCcCEEeccCCccCC
Q 046860 207 FTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 207 l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+++.+|..+..+++|+.|++++|++++
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccccCHhhcccCCCCCEEeCCCCCccc
Confidence 555445445555556666666665554
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.7e-22 Score=157.30 Aligned_cols=159 Identities=27% Similarity=0.314 Sum_probs=143.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
..++.|++++|.+++.. +..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 46899999999998766 77899999999999999999987788899999999999999999966667788999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 999999966556678999999999999999966666899999999999999999977776777 8999999999999987
Q ss_pred c
Q 046860 210 Y 210 (234)
Q Consensus 210 ~ 210 (234)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 5
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.9e-22 Score=177.45 Aligned_cols=181 Identities=23% Similarity=0.202 Sum_probs=110.7
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCC--CccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTI--PPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
++.|++++|.+.+.+++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 4444444444443332333555666666666666655433 45566666677777776666655566666666777777
Q ss_pred cccCcCCCCCCcc-ccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccccc-CC--CCCC-CCCCCeEecccC
Q 046860 131 IDTNQLDGSIPPE-LGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGS-IP--PSLE-YPMLTTLNLDFN 205 (234)
Q Consensus 131 l~~n~~~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~--~~~~-~~~L~~L~l~~n 205 (234)
+++|.+.+..|.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. ++ ..+. +++|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 7777666444433 56667777777777776665666666677777777777766542 11 2233 666777777777
Q ss_pred cccccCCccCCCCCCcCEEeccCCccCC
Q 046860 206 HFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 206 ~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.+++..|..+..+++|+.|++++|++++
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred ccCccChhhhccccCCCEEECCCCccCc
Confidence 7666666666677777777777776653
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.7e-22 Score=167.70 Aligned_cols=180 Identities=20% Similarity=0.236 Sum_probs=139.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.++++++.++. +++..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 467888888888764 4355577888999999999988866667888899999999999998866667788889999999
Q ss_pred cccCcCCCCCCcc-ccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCC-------------------
Q 046860 131 IDTNQLDGSIPPE-LGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPP------------------- 190 (234)
Q Consensus 131 l~~n~~~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------------------- 190 (234)
+++|.++ .+|.. |..+++|++|++++|.+.+..+..+..+++|++|++++|.+++....
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 9999888 45544 67888999999999988876677788888888888888877632110
Q ss_pred ----------------------------------------CCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCC
Q 046860 191 ----------------------------------------SLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASL 229 (234)
Q Consensus 191 ----------------------------------------~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N 229 (234)
.+. +++|+.|++++|.+++..|..+..+++|++|++++|
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 012 466777788888877776777777888888888887
Q ss_pred ccC
Q 046860 230 VFL 232 (234)
Q Consensus 230 ~l~ 232 (234)
+++
T Consensus 283 ~l~ 285 (390)
T 3o6n_A 283 RLV 285 (390)
T ss_dssp CCC
T ss_pred cCc
Confidence 765
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=9.6e-24 Score=171.56 Aligned_cols=177 Identities=21% Similarity=0.240 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCCcccccCCCcC--CCCCCCCEEEccCCccccCCCccCCCC-----CCCcEEEeecccccccCCccCcCC
Q 046860 51 GRVIKISLPKIGLKGTLHDFSF--SSFPHLAYLDLSYNELFGTIPPQISNL-----TNLTTLYFGGDQFSGNIPPEVGLM 123 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l 123 (234)
.+++.|++++|.+++.+ +..+ ..+++|+.|++++|.+++. |..+..+ ++|++|++++|++.+..|..+..+
T Consensus 95 ~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTA-PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCC-CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCcccchh-HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 34556666666655544 3332 5555555555555555533 4333333 455555555555543333444444
Q ss_pred CCCcEEEcccCcCCCC--CCc-----------------------------cccCCCCCcEEEcccCcCccCCC-ccCCCC
Q 046860 124 SHLELLHIDTNQLDGS--IPP-----------------------------ELGQLSSLVVLSLFFNHLNGSVP-PSLGNL 171 (234)
Q Consensus 124 ~~L~~L~l~~n~~~~~--~p~-----------------------------~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~ 171 (234)
++|++|++++|++.+. .+. .+..+++|++|++++|.+.+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 4455555444443321 111 12344566666666666654443 334455
Q ss_pred CCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 172 TNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 172 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++|++|++++|.++ .+|..+. ++|+.|++++|.+++. |. +..+++|++|++++|+|++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 66666666666666 4454444 6677777777777664 44 6677777777777777765
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=185.28 Aligned_cols=192 Identities=20% Similarity=0.168 Sum_probs=167.5
Q ss_pred ceeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCC-CccCCCCCCCcEEEeecccccccCCc
Q 046860 40 CAWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTI-PPQISNLTNLTTLYFGGDQFSGNIPP 118 (234)
Q Consensus 40 c~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~ 118 (234)
|.|..+.+ -..+++.|+|++|.+++.. +..|.++++|+.|++++|...+.+ |.+|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666666 5578999999999998776 889999999999999999655444 78899999999999999999988899
Q ss_pred cCcCCCCCcEEEcccCcCCCCCCcc--ccCCCCCcEEEcccCcCccCCC-ccCCCCCCCceEEcccCcccccCCCCCC-C
Q 046860 119 EVGLMSHLELLHIDTNQLDGSIPPE--LGQLSSLVVLSLFFNHLNGSVP-PSLGNLTNLQQLILFSNNLSGSIPPSLE-Y 194 (234)
Q Consensus 119 ~~~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~ 194 (234)
.|..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..+. +
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999766665 8899999999999999986654 5789999999999999999988777776 5
Q ss_pred --CCCCeEecccCcccccCCccCCCCCC------cCEEeccCCccCC
Q 046860 195 --PMLTTLNLDFNHFTSYLPHNVCRGSM------CCRFSLASLVFLD 233 (234)
Q Consensus 195 --~~L~~L~l~~n~l~~~~~~~~~~~~~------L~~L~l~~N~l~~ 233 (234)
++|+.|+++.|.+.+..|..++.+++ |+.|++++|.+++
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 89999999999999988877776665 9999999998764
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.2e-22 Score=175.98 Aligned_cols=182 Identities=19% Similarity=0.196 Sum_probs=150.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.++++++.+.. +++..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 357889999998865 4366688899999999999999977778999999999999999999977777789999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCC--------------------
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPP-------------------- 190 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------- 190 (234)
+++|.++...+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++....
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 999999944444568999999999999999988888899999999999999887643111
Q ss_pred ---------------------------------------CCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCc
Q 046860 191 ---------------------------------------SLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLV 230 (234)
Q Consensus 191 ---------------------------------------~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~ 230 (234)
.+. +++|+.|++++|.+.+.+|..++.+++|+.|+|++|.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 122 5678888888888888778888888888888888887
Q ss_pred cCC
Q 046860 231 FLD 233 (234)
Q Consensus 231 l~~ 233 (234)
+++
T Consensus 290 l~~ 292 (597)
T 3oja_B 290 LVA 292 (597)
T ss_dssp CCE
T ss_pred CCC
Confidence 753
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=172.42 Aligned_cols=182 Identities=19% Similarity=0.077 Sum_probs=129.7
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
..+++.|+|++|.+++.. +..|.++++|+.|++++|.++...+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 356888888888887665 7778888888888888888875555567788888888888888876667777778888888
Q ss_pred EcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CC-------------
Q 046860 130 HIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YP------------- 195 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~------------- 195 (234)
++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. ++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 8888877766666777777777777777777744444566666666666666666655443333 44
Q ss_pred -----------CCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 196 -----------MLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 196 -----------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+|+.|++++|.++...+..+..+++|+.|+|++|.++
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 5555566666666533345677788888888888765
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.9e-23 Score=184.98 Aligned_cols=190 Identities=15% Similarity=0.284 Sum_probs=150.1
Q ss_pred CceeeeEEe--CCCCCEEEEEcCCCCcccc-----------------cCCCcCC--CCCCCCEEEccCCccccCCCccCC
Q 046860 39 PCAWSGISC--NDAGRVIKISLPKIGLKGT-----------------LHDFSFS--SFPHLAYLDLSYNELFGTIPPQIS 97 (234)
Q Consensus 39 ~c~~~g~~~--~~~~~~~~L~l~~~~l~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~ 97 (234)
.+.+.|+.- ....+++.|++++|.+++. + |..+. ++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 446666432 1346799999999999985 7 78888 999999999999999999999999
Q ss_pred CCCCCcEEEeeccc-ccc-cCCccCcCC------CCCcEEEcccCcCCCCCCc--cccCCCCCcEEEcccCcCccCCCcc
Q 046860 98 NLTNLTTLYFGGDQ-FSG-NIPPEVGLM------SHLELLHIDTNQLDGSIPP--ELGQLSSLVVLSLFFNHLNGSVPPS 167 (234)
Q Consensus 98 ~l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~L~l~~n~~~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~ 167 (234)
++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .++.+++|++|++++|.+.+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 99999999999998 887 778777665 89999999999998 7888 88899999999999999887777 7
Q ss_pred CCCCCCCceEEcccCcccccCCCCCC-CCC-CCeEecccCcccccCCccCCCCC--CcCEEeccCCccCC
Q 046860 168 LGNLTNLQQLILFSNNLSGSIPPSLE-YPM-LTTLNLDFNHFTSYLPHNVCRGS--MCCRFSLASLVFLD 233 (234)
Q Consensus 168 ~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~-L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~N~l~~ 233 (234)
+..+++|++|++++|.++ .+|..+. +++ |+.|++++|.++ .+|..+..++ +|+.|++++|.+++
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 777777777777777777 5555555 666 777777777776 4565555433 66666666666643
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=4e-22 Score=163.25 Aligned_cols=180 Identities=26% Similarity=0.312 Sum_probs=131.5
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCc----------------------cCCCCCCCcEEEe
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPP----------------------QISNLTNLTTLYF 107 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l 107 (234)
..+++.|++++|.+++.. +..+.++++|++|++++|.++ .+|. .|..+++|++|++
T Consensus 77 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 346888888888887655 667777888888888777765 3333 2444555555555
Q ss_pred ecccccc--cCCccCcCC--------------------CCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCC
Q 046860 108 GGDQFSG--NIPPEVGLM--------------------SHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVP 165 (234)
Q Consensus 108 ~~n~l~~--~~p~~~~~l--------------------~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 165 (234)
++|.++. ..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 5555531 222222221 245555555555554455677888999999999999997777
Q ss_pred ccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCC------CCCcCEEeccCCccC
Q 046860 166 PSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCR------GSMCCRFSLASLVFL 232 (234)
Q Consensus 166 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~N~l~ 232 (234)
..+..+++|++|++++|.++ .+|..+. +++|+.|++++|.+++..+..++. .+.|+.|++++|.++
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 78999999999999999999 6676666 999999999999999876666654 477999999999876
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=7.4e-22 Score=152.71 Aligned_cols=151 Identities=21% Similarity=0.211 Sum_probs=119.3
Q ss_pred EEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccC
Q 046860 55 KISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTN 134 (234)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 134 (234)
.+++++++++. + |..+ .+.++.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|
T Consensus 15 ~v~c~~~~l~~-i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLTE-I-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCSS-C-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcCc-C-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666653 3 3333 268899999999988666678888999999999999998777888888899999999999
Q ss_pred cCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 135 QLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 135 ~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
.++...+..|..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..+..+. +++|+.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88844444567888888888888888877777888888888888888888876666666 7888888888888754
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5.4e-22 Score=162.28 Aligned_cols=178 Identities=22% Similarity=0.233 Sum_probs=134.8
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccC----------------------CCCCCCcEEEe
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQI----------------------SNLTNLTTLYF 107 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------~~l~~L~~L~l 107 (234)
..+++.|++++|.+++.. +..+..+++|++|++++|.++ .+|..+ ..+++|++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 75 LKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 457899999999998766 778888999999999998876 444332 33444555555
Q ss_pred ecccccc--cCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccc
Q 046860 108 GGDQFSG--NIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 108 ~~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 185 (234)
++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 5554431 33344555566666666666655 3444432 67778888888887767788999999999999999999
Q ss_pred ccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 186 GSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 186 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+..+..+. +++|+.|++++|.++. +|..+..+++|++|++++|+|++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCC
T ss_pred eeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCc
Confidence 88777777 9999999999999984 78889999999999999999875
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=3.5e-23 Score=168.23 Aligned_cols=153 Identities=24% Similarity=0.270 Sum_probs=124.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccC--CCccC--CCCCCCcEEEeecccccc--cCC-ccCcCC
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGT--IPPQI--SNLTNLTTLYFGGDQFSG--NIP-PEVGLM 123 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l 123 (234)
.+++.|++++|.+.+.. +..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++ ..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccch-HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 56888888888887655 67888899999999999987643 23333 788999999999998872 122 234578
Q ss_pred CCCcEEEcccCcCCCCCC-ccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEe
Q 046860 124 SHLELLHIDTNQLDGSIP-PELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLN 201 (234)
Q Consensus 124 ~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~ 201 (234)
++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +. +++|++|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 999999999999997664 45667899999999999999 7787766 8999999999999966 65 55 99999999
Q ss_pred cccCcccc
Q 046860 202 LDFNHFTS 209 (234)
Q Consensus 202 l~~n~l~~ 209 (234)
+++|.+++
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 99999986
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.4e-21 Score=174.04 Aligned_cols=182 Identities=17% Similarity=0.187 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeeccccc--ccCCccCcCCCCCcEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFS--GNIPPEVGLMSHLELL 129 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L 129 (234)
+++.|++++|.+.+.+++..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. +..|..+..+++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 34444444444444332334444444444444444444333344444444444444444443 2345556666667777
Q ss_pred EcccCcCCCCCCccccCCCCCcEEEcccCcCccCC----C----ccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeE
Q 046860 130 HIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSV----P----PSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTL 200 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~----~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L 200 (234)
++++|.+++..+..|..+++|++|++++|.+++.. | ..+..+++|++|++++|.++...+..+. +++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 77777666544455666667777777776665321 1 1255666677777777776643333444 6777777
Q ss_pred ecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 201 NLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 201 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++++|.+++..+..+..+++|+.|++++|+|+.
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 777777776555556667777777777776653
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=175.39 Aligned_cols=183 Identities=22% Similarity=0.165 Sum_probs=155.2
Q ss_pred CCEEEEEcCCCCcccccC-CCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCC-ccCcCCCCCcE
Q 046860 51 GRVIKISLPKIGLKGTLH-DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIP-PEVGLMSHLEL 128 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~ 128 (234)
.+++.|++++|.+++... +..+..+++|+.|++++|.+.+. +..+..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 467788888887764310 34566788888888888888744 3348889999999999999886555 46788999999
Q ss_pred EEcccCcCCCCCCccccCCCCCcEEEcccCcCc-cCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCc
Q 046860 129 LHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLN-GSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNH 206 (234)
Q Consensus 129 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~ 206 (234)
|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+. +++|+.|++++|.
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 999999998888888999999999999999987 56888999999999999999999988888877 8999999999999
Q ss_pred ccccCCccCCCCCCcCEEeccCCccCCC
Q 046860 207 FTSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 207 l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
+++.++..+..+++|+.|++++|+++++
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9998888889999999999999999874
No 54
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=150.61 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=123.4
Q ss_pred EEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCC-ccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 55 KISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIP-PQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
.++++++.++. + |..+ ...+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~~-i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-I-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-C-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc-C-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 67888888764 4 4333 3456899999999886544 4578899999999999999866666888899999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccccc
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. +++|+.|++++|.+.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999866666788889999999999998877788888888899999999988877777777 88888888888888754
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.4e-21 Score=170.78 Aligned_cols=159 Identities=24% Similarity=0.223 Sum_probs=135.4
Q ss_pred CCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccc--cCCccCcCCCCCcEEEcccCcCCCCCCc-cccCCCC
Q 046860 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSG--NIPPEVGLMSHLELLHIDTNQLDGSIPP-ELGQLSS 149 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~ 149 (234)
..+++|+.|++++|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 678899999999999998788899999999999999999984 2345688899999999999999975665 4778899
Q ss_pred CcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccC
Q 046860 150 LVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLAS 228 (234)
Q Consensus 150 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 228 (234)
|++|++++|.+++..|..+. ++|++|++++|.++ .+|..+. +++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 99999999999876666544 68999999999998 5565555 99999999999999964334488999999999999
Q ss_pred CccCCC
Q 046860 229 LVFLDG 234 (234)
Q Consensus 229 N~l~~~ 234 (234)
|+++++
T Consensus 507 N~~~c~ 512 (562)
T 3a79_B 507 NPWDCT 512 (562)
T ss_dssp CCBCCC
T ss_pred CCcCCC
Confidence 999875
No 56
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=3.8e-21 Score=149.56 Aligned_cols=158 Identities=23% Similarity=0.282 Sum_probs=92.9
Q ss_pred CCCCceeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeeccccccc
Q 046860 36 KISPCAWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGN 115 (234)
Q Consensus 36 ~~~~c~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 115 (234)
....|.|.++.|... .++ .+ |..+ .++|+.|++++|.+++..+..|..+++|++|++++|+++..
T Consensus 15 ~~~~Cs~~~v~c~~~-----------~l~-~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK-----------RHA-SV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCEEETTEEECTTS-----------CCS-SC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEeCCEeEccCC-----------CcC-cc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 778999999998632 122 22 2111 25566666666666655555566666666666666666533
Q ss_pred CCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-C
Q 046860 116 IPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-Y 194 (234)
Q Consensus 116 ~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~ 194 (234)
.+..+..+++|++|++++|.++...+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+. +
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 3334556666666666666666443444556666666666666666 5555556666666666666666644444444 5
Q ss_pred CCCCeEecccCcccc
Q 046860 195 PMLTTLNLDFNHFTS 209 (234)
Q Consensus 195 ~~L~~L~l~~n~l~~ 209 (234)
++|+.|++++|.+.+
T Consensus 159 ~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCCEEECTTSCBCT
T ss_pred CCCCEEEeeCCCccC
Confidence 666666666666554
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4.3e-21 Score=170.96 Aligned_cols=181 Identities=23% Similarity=0.202 Sum_probs=153.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCC-ccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIP-PQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.++.|++++|.+++.. +..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 382 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred cCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 5777888888887666 7788889999999999999876555 6788899999999999998877777888899999999
Q ss_pred cccCcCC--CCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCC--------CCCC-CCCCCe
Q 046860 131 IDTNQLD--GSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIP--------PSLE-YPMLTT 199 (234)
Q Consensus 131 l~~n~~~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~-~~~L~~ 199 (234)
+++|.+. +..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+. +++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 9999876 4678889999999999999999997777789999999999999999985422 1244 899999
Q ss_pred EecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 200 LNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 200 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
|++++|.++...+..|..+++|+.|++++|+++.
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence 9999999997555678999999999999999874
No 58
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=163.83 Aligned_cols=177 Identities=20% Similarity=0.134 Sum_probs=111.4
Q ss_pred CEEEEEcCCCCcccccCCCcC--CCCCCCCEEEccCCccccCCC----ccCCCCCCCcEEEeecccccccCCccCcCCCC
Q 046860 52 RVIKISLPKIGLKGTLHDFSF--SSFPHLAYLDLSYNELFGTIP----PQISNLTNLTTLYFGGDQFSGNIPPEVGLMSH 125 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 125 (234)
+++.|++++|.+.+.. +..+ ..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTM-PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCC-CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccch-hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3778888888877666 4444 666667777777666654333 22334566666666666665444455556666
Q ss_pred CcEEEcccCcCCC---------------------------CCCc----cccCCCCCcEEEcccCcCccCCCccCCCC---
Q 046860 126 LELLHIDTNQLDG---------------------------SIPP----ELGQLSSLVVLSLFFNHLNGSVPPSLGNL--- 171 (234)
Q Consensus 126 L~~L~l~~n~~~~---------------------------~~p~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~--- 171 (234)
|++|++++|++.+ .++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 6666666665431 1121 12345667777777777775556655554
Q ss_pred CCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 172 TNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 172 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++|++|++++|.++ .+|..+. ++|+.|++++|.+++. |. +..+++|+.|++++|+|++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 57777777777777 4454433 6777788888877763 33 5677888888888888776
No 59
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=162.97 Aligned_cols=154 Identities=25% Similarity=0.270 Sum_probs=123.9
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccC--C--CccCCCCCCCcEEEeecccccccCCc----cCc
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGT--I--PPQISNLTNLTTLYFGGDQFSGNIPP----EVG 121 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~p~----~~~ 121 (234)
..+++.|++++|.+.+.. +..+..+++|+.|++++|.+.+. + +..+..+++|++|++++|+++ .++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 446888999999887655 77888899999999999986532 1 233467888999999999886 3333 246
Q ss_pred CCCCCcEEEcccCcCCCCCCccccCC---CCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCC
Q 046860 122 LMSHLELLHIDTNQLDGSIPPELGQL---SSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLT 198 (234)
Q Consensus 122 ~l~~L~~L~l~~n~~~~~~p~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~ 198 (234)
.+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++. |....+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCcc
Confidence 78999999999999997778777766 69999999999999 7787664 7999999999999954 4433389999
Q ss_pred eEecccCcccc
Q 046860 199 TLNLDFNHFTS 209 (234)
Q Consensus 199 ~L~l~~n~l~~ 209 (234)
.|++++|.+++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999875
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=169.09 Aligned_cols=39 Identities=13% Similarity=-0.019 Sum_probs=25.1
Q ss_pred CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 194 YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 194 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+++|++|++++|.+++.+|..++.+++|+.|++++|+++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence 455666666666666656666666666666666666665
No 61
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=168.61 Aligned_cols=177 Identities=23% Similarity=0.193 Sum_probs=148.8
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccc--cCCccCcCCCCCcEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSG--NIPPEVGLMSHLELL 129 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L 129 (234)
+++.|++++|.+.... ....+++|+.|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|
T Consensus 303 ~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ceeEEEcCCCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 3666666666654321 12688999999999999998889999999999999999999985 455678899999999
Q ss_pred EcccCcCCCCCCcc-ccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcc
Q 046860 130 HIDTNQLDGSIPPE-LGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHF 207 (234)
Q Consensus 130 ~l~~n~~~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l 207 (234)
++++|.+.+.+|.. +..+++|++|++++|.+++..|..+. ++|++|++++|.++ .+|..+. +++|+.|++++|.+
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 99999999757764 78899999999999999877776554 79999999999999 6676555 99999999999999
Q ss_pred cccCCccCCCCCCcCEEeccCCccCCC
Q 046860 208 TSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 208 ~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
+...+..+..+++|+.|++++|+++++
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccCHHHhccCCcccEEECcCCCCccc
Confidence 964334488999999999999999875
No 62
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=8e-21 Score=147.73 Aligned_cols=153 Identities=25% Similarity=0.247 Sum_probs=134.3
Q ss_pred CCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccc
Q 046860 78 LAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFF 157 (234)
Q Consensus 78 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 157 (234)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888887 6676543 8999999999999977788899999999999999999855556678999999999999
Q ss_pred CcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCCC
Q 046860 158 NHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLDG 234 (234)
Q Consensus 158 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~ 234 (234)
|.+++..+..+..+++|++|++++|.++ .+|..+. +++|+.|++++|.+++..+..+..+++|+.|++++|.++++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999766667899999999999999999 6676666 99999999999999987777789999999999999999864
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.1e-21 Score=169.61 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
..+++.|++++|.+++.. +..|.++++|++|++++|.+++..|.+|..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence 357899999999998655 678999999999999999998777888999999999999999988 56655 78888888
Q ss_pred EcccCcCCC-CCCccccCCCCCcEEEcccCcCc
Q 046860 130 HIDTNQLDG-SIPPELGQLSSLVVLSLFFNHLN 161 (234)
Q Consensus 130 ~l~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~ 161 (234)
++++|.+++ ..|..|+.+++|++|++++|.+.
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 888888875 34567888888888888777664
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.5e-22 Score=182.36 Aligned_cols=189 Identities=16% Similarity=0.226 Sum_probs=155.3
Q ss_pred CceeeeEEe--CCCCCEEEEEcCCCCccc-----------------ccCCCcCC--CCCCCCEEEccCCccccCCCccCC
Q 046860 39 PCAWSGISC--NDAGRVIKISLPKIGLKG-----------------TLHDFSFS--SFPHLAYLDLSYNELFGTIPPQIS 97 (234)
Q Consensus 39 ~c~~~g~~~--~~~~~~~~L~l~~~~l~~-----------------~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~ 97 (234)
.+.+.|+.. ....+++.|+|++|.+++ .+ |..++ ++++|+.|++++|.+.+.+|..+.
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 356666432 134679999999999998 36 77777 999999999999999889999999
Q ss_pred CCCCCcEEEeeccc-ccc-cCCccCcC-------CCCCcEEEcccCcCCCCCCc--cccCCCCCcEEEcccCcCccCCCc
Q 046860 98 NLTNLTTLYFGGDQ-FSG-NIPPEVGL-------MSHLELLHIDTNQLDGSIPP--ELGQLSSLVVLSLFFNHLNGSVPP 166 (234)
Q Consensus 98 ~l~~L~~L~l~~n~-l~~-~~p~~~~~-------l~~L~~L~l~~n~~~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~ 166 (234)
.+++|++|++++|+ +++ .+|..+.. +++|++|++++|.++ .+|. .+..+++|++|++++|.+. .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 99999999999998 886 67765444 459999999999999 8888 8899999999999999998 777
Q ss_pred cCCCCCCCceEEcccCcccccCCCCCC-CCC-CCeEecccCcccccCCccCCCCCC--cCEEeccCCccCC
Q 046860 167 SLGNLTNLQQLILFSNNLSGSIPPSLE-YPM-LTTLNLDFNHFTSYLPHNVCRGSM--CCRFSLASLVFLD 233 (234)
Q Consensus 167 ~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~N~l~~ 233 (234)
.+..+++|+.|++++|.++ .+|..+. +++ |+.|++++|.++ .+|..+..++. |+.|++++|.+++
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 7888899999999999988 6776666 777 999999999888 57776665543 7888888887753
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.2e-22 Score=172.93 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=76.6
Q ss_pred CCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCcccc-CCCCCcEEEcccCcCccCCCccCCCCCCCceEE
Q 046860 100 TNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELG-QLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLI 178 (234)
Q Consensus 100 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 178 (234)
++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. + .+..+++|++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEE
Confidence 3444444444444433444455556666666666666554455443 456666666666666533 2 123466677777
Q ss_pred cccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 179 LFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 179 L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+++|.+++.+|. +. +++|+.|++++|.+++ +|..+..+++|+.|++++|.++
T Consensus 198 Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 198 LSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 777777654444 33 6777777777777765 5555677777777777777765
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=159.59 Aligned_cols=181 Identities=20% Similarity=0.206 Sum_probs=153.3
Q ss_pred EEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCC
Q 046860 45 ISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMS 124 (234)
Q Consensus 45 ~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 124 (234)
..|...+ ..+.+++.++. + |..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..++
T Consensus 28 ~~C~~~~---~c~~~~~~l~~-i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 28 LSCDRNG---ICKGSSGSLNS-I-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp CEECTTS---EEECCSTTCSS-C-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCCe---EeeCCCCCccc-c-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 4454432 38899999874 4 3333 35899999999999866666899999999999999999977778899999
Q ss_pred CCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCc--cCCCCCCCceEEcccC-cccccCCCCCC-CCCCCeE
Q 046860 125 HLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPP--SLGNLTNLQQLILFSN-NLSGSIPPSLE-YPMLTTL 200 (234)
Q Consensus 125 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n-~l~~~~~~~~~-~~~L~~L 200 (234)
+|++|++++|.++...+..+..+++|++|++++|.+. .+|. .+..+++|++|++++| .+.+..+..+. +++|+.|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999999999544444889999999999999999 4554 7889999999999999 47766666777 9999999
Q ss_pred ecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 201 NLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 201 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++++|.+++..|..+..+++|++|++++|.++.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 999999999889999999999999999998753
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=1.2e-21 Score=162.37 Aligned_cols=177 Identities=22% Similarity=0.173 Sum_probs=148.7
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCC-CCCCCcEEEeecccccccCCccCcCCCCCcEEEcc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQIS-NLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHID 132 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 132 (234)
+.++++++.++. + |..+ ...++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-V-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-C-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-c-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 367888888874 4 3333 35689999999999877777777 89999999999999997777789999999999999
Q ss_pred cCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCC---C-CCCCCeEecccCccc
Q 046860 133 TNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSL---E-YPMLTTLNLDFNHFT 208 (234)
Q Consensus 133 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~-~~~L~~L~l~~n~l~ 208 (234)
+|.++...+..|..+++|++|++++|.+....+..|..+++|++|+|++|.+++..+..+ . +++|+.|++++|.|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999996666678999999999999999997778899999999999999999996544444 3 889999999999999
Q ss_pred ccCCccCCCCCC--cCEEeccCCccCCC
Q 046860 209 SYLPHNVCRGSM--CCRFSLASLVFLDG 234 (234)
Q Consensus 209 ~~~~~~~~~~~~--L~~L~l~~N~l~~~ 234 (234)
+..+..+..++. ++.|+|++|.+.+|
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 865566777777 48899999999865
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.1e-21 Score=147.08 Aligned_cols=169 Identities=22% Similarity=0.213 Sum_probs=138.8
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
+.++.++++++. + +. .-.++|+.|++++|.+++..+..|..+++|++|++++|+++...+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~-p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-V-PT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-C-CS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-C-CC--CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 578888888763 3 22 2356899999999999866666788999999999999999955555678899999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCC
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLP 212 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 212 (234)
|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 999965555678999999999999999966666788999999999999999976666666 8999999999997654
Q ss_pred ccCCCCCCcCEEeccCCccCC
Q 046860 213 HNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 213 ~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.+++|+.|+++.|.+++
T Consensus 163 ----~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTT
T ss_pred ----CCCCHHHHHHHHHhCCc
Confidence 45677888888877764
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=3.3e-21 Score=169.73 Aligned_cols=179 Identities=24% Similarity=0.249 Sum_probs=146.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
..++.|+|++|.+++.. +..|.++++|++|++++|.+++..+.+|.++++|++|++++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 36899999999998654 78899999999999999999877778899999999999999999865556789999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCcc-CCCccCCCCCCCceEEcccCcccccCCCCCC-CCC----CCeEeccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNG-SVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPM----LTTLNLDF 204 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~----L~~L~l~~ 204 (234)
+++|.+++..+..|+.+++|++|++++|.++. ..|..+..+++|++|++++|.+++..+..+. +.+ ...++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999996555678999999999999999875 3577888899999999999999877776665 332 44678888
Q ss_pred CcccccCCccCCCCCCcCEEeccCCcc
Q 046860 205 NHFTSYLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 205 n~l~~~~~~~~~~~~~L~~L~l~~N~l 231 (234)
|.+....+. ......+..+++..|..
T Consensus 211 n~l~~i~~~-~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 211 NPMNFIQPG-AFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp CCCCEECTT-TTTTCEEEEEEEESCCS
T ss_pred CcccccCcc-cccchhhhhhhhhcccc
Confidence 888775444 34444566777777643
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=168.84 Aligned_cols=178 Identities=24% Similarity=0.257 Sum_probs=157.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
..++.|++++|.+++.. +..|.++++|++|++++|.+++..+..|..+++|++|++++|.++...|..|..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccC-hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46999999999998766 77899999999999999999877788899999999999999999977778899999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCcc-CCCccCCCCCCCceEEcccCcccccCCCCCC-CCCC----CeEeccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNG-SVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPML----TTLNLDF 204 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L----~~L~l~~ 204 (234)
+++|.++...+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+. +++| +.+++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99999995444468999999999999999986 4689999999999999999999987777666 6777 8999999
Q ss_pred CcccccCCccCCCCCCcCEEeccCCc
Q 046860 205 NHFTSYLPHNVCRGSMCCRFSLASLV 230 (234)
Q Consensus 205 n~l~~~~~~~~~~~~~L~~L~l~~N~ 230 (234)
|.+.+..|..+... +|+.|++++|.
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CCceecCHHHhccC-cceeEeccccc
Confidence 99999777777665 89999999884
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.3e-21 Score=156.33 Aligned_cols=169 Identities=25% Similarity=0.383 Sum_probs=133.0
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
..+++.|++++|.+++.. + +..+++|+.|++++|.+++ + ..+..+++|++|++++|.+++ ++. +..+++|++|
T Consensus 62 l~~L~~L~L~~n~i~~~~-~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLA-P--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL 134 (308)
T ss_dssp CTTCCEEECCSSCCCCCG-G--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCCCh-h--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence 356888888888887543 3 7888888888888888874 3 367888889999999888874 433 7788889999
Q ss_pred EcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccc
Q 046860 130 HIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFT 208 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~ 208 (234)
++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++..+ +. +++|+.|++++|.++
T Consensus 135 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 135 YLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp ECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence 999888884 343 7788889999999988884 444 7888899999999998885433 44 888999999999988
Q ss_pred ccCCccCCCCCCcCEEeccCCccCC
Q 046860 209 SYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+..+ +..+++|+.|++++|.+++
T Consensus 209 ~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 209 DVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp BCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cccc--ccCCCCCCEEEccCCeeec
Confidence 7543 7888999999999988865
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.1e-21 Score=154.79 Aligned_cols=168 Identities=26% Similarity=0.391 Sum_probs=144.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|+++++.++. + + .+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l-~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-I-E-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-C-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-c-h-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEE
Confidence 469999999999874 3 3 68889999999999999984 444 8999999999999999984 4 3688999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +. +++|+.|++++|.+++
T Consensus 114 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 99999984 444 88999999999999999844 43 8889999999999999985433 44 9999999999999987
Q ss_pred cCCccCCCCCCcCEEeccCCccCC
Q 046860 210 YLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
..+ +..+++|++|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCB
T ss_pred Chh--hcCCCCCCEEEccCCccCc
Confidence 543 7899999999999999875
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=9.7e-22 Score=160.05 Aligned_cols=176 Identities=21% Similarity=0.191 Sum_probs=122.2
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCc----------------cCCCCCCCcEEEeeccccc
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPP----------------QISNLTNLTTLYFGGDQFS 113 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~~~~l~~L~~L~l~~n~l~ 113 (234)
..+++.|++++|.+++.. + +..+++|++|++++|.+++..+. ....+++|++|++++|.++
T Consensus 57 l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp CTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred CCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence 456778888888777654 2 77777888888877776532110 0112445666666666666
Q ss_pred ccCCccCcCCCCCcEEEcccCcCCCCCCccc-cCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCC
Q 046860 114 GNIPPEVGLMSHLELLHIDTNQLDGSIPPEL-GQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSL 192 (234)
Q Consensus 114 ~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 192 (234)
+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++..+. +
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~ 210 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-F 210 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-G
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-h
Confidence 4445566667777888888877775555555 3577788888888877743 3 233478888888888888865444 4
Q ss_pred C-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 193 E-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 193 ~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
. +++|+.|++++|.+++ +|..+..+++|+.|++++|.++
T Consensus 211 ~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred cccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 4 8888899999988885 6667888889999999999886
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=171.28 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=40.1
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCcc--CCCCCCCcEEEeecccccccCC-ccCcCCCCCcE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQ--ISNLTNLTTLYFGGDQFSGNIP-PEVGLMSHLEL 128 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~ 128 (234)
+++.|+|++|.+.+.. +..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+ ..+..+++|++
T Consensus 74 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TCCEEECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCEEECCCCcCcccC-HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 3455555555554443 444555555555555555544333322 4455555555555555543322 23444555555
Q ss_pred EEcccCcCC
Q 046860 129 LHIDTNQLD 137 (234)
Q Consensus 129 L~l~~n~~~ 137 (234)
|++++|.++
T Consensus 153 L~Ls~N~i~ 161 (844)
T 3j0a_A 153 IDFSSNQIF 161 (844)
T ss_dssp EEEESSCCC
T ss_pred EECCCCcCC
Confidence 555544443
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=7.9e-21 Score=152.93 Aligned_cols=168 Identities=25% Similarity=0.303 Sum_probs=143.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|+++++.+.+. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred CcccEEEccCCCcccC---hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 4589999999998753 347889999999999999985433 8899999999999999984 43 488999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +. +++|+.|++++|.+++
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 99999984 3 4688899999999999999854 578899999999999999986554 45 9999999999999987
Q ss_pred cCCccCCCCCCcCEEeccCCccCC
Q 046860 210 YLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++ .+..+++|+.|++++|++++
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 44 38899999999999998864
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=3.9e-20 Score=143.01 Aligned_cols=146 Identities=22% Similarity=0.309 Sum_probs=123.6
Q ss_pred CceeeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEee
Q 046860 39 PCAWSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFG 108 (234)
Q Consensus 39 ~c~~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (234)
.|.|..+.|.. ...++.|++++|.+++.. +..|..+++|+.|++++|.+++..|..|..+++|++|+++
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 35788888853 236899999999988655 6788899999999999999987778889999999999999
Q ss_pred cccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccc
Q 046860 109 GDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 109 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 185 (234)
+|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99998544455788999999999999999777888889999999999999998766677888999999999999886
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=1.3e-20 Score=163.88 Aligned_cols=180 Identities=21% Similarity=0.214 Sum_probs=154.7
Q ss_pred CceeeeEEeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCc
Q 046860 39 PCAWSGISCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPP 118 (234)
Q Consensus 39 ~c~~~g~~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 118 (234)
.|.|.|+ | +.+++.++ .+ |..+ .++|++|++++|.+++..|..|..+++|++|++++|++++..|.
T Consensus 3 ~C~~~~~-c---------~~~~~~l~-~i-p~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C---------DGRSRSFT-SI-PSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E---------ECTTSCCS-SC-CSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E---------ECCCCccc-cc-cccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4778776 6 45667776 34 3333 37899999999999977788999999999999999999977778
Q ss_pred cCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCcc-CCCccCCCCCCCceEEcccCcccccCC-CCCC-CC
Q 046860 119 EVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNG-SVPPSLGNLTNLQQLILFSNNLSGSIP-PSLE-YP 195 (234)
Q Consensus 119 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~-~~ 195 (234)
.|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+. ++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 89999999999999999997666669999999999999999985 356789999999999999998443444 5566 99
Q ss_pred CCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 196 MLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 196 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+|+.|++++|.+++.+|..++.+++|++|+++.|.++
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999999999999999999999999999999999864
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.1e-20 Score=147.69 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=145.8
Q ss_pred CCCEEEEEcCCCC-cccccCCCcCCCCCCCCEEEccC-CccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCc
Q 046860 50 AGRVIKISLPKIG-LKGTLHDFSFSSFPHLAYLDLSY-NELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLE 127 (234)
Q Consensus 50 ~~~~~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 127 (234)
..+++.|++++|. +++.. +..|.++++|+.|++++ |.++...+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 4579999999997 76544 67899999999999998 99986666788999999999999999984 666 88888888
Q ss_pred ---EEEcccC-cCCCCCCccccCCCCCc-EEEcccCcCccCCCccCCCCCCCceEEcccCc-ccccCCCCCC-C-CCCCe
Q 046860 128 ---LLHIDTN-QLDGSIPPELGQLSSLV-VLSLFFNHLNGSVPPSLGNLTNLQQLILFSNN-LSGSIPPSLE-Y-PMLTT 199 (234)
Q Consensus 128 ---~L~l~~n-~~~~~~p~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~-~-~~L~~ 199 (234)
+|++++| .++...+..|..+++|+ ++++++|.++ .+|......++|++|++++|. +++..+..+. + ++|+.
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 9999999 88865556789999999 9999999998 555543334899999999995 9877677777 7 99999
Q ss_pred EecccCcccccCCccCCCCCCcCEEeccCCc
Q 046860 200 LNLDFNHFTSYLPHNVCRGSMCCRFSLASLV 230 (234)
Q Consensus 200 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~ 230 (234)
|++++|.+++ +|.. .+++|+.|+++++.
T Consensus 210 L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 210 LDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred EECCCCcccc-CChh--HhccCceeeccCcc
Confidence 9999999987 4432 67889999998763
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3.6e-21 Score=165.42 Aligned_cols=177 Identities=19% Similarity=0.182 Sum_probs=139.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCc-------------
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPP------------- 118 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~------------- 118 (234)
+++.|+|++|.+++.. +..|..+++|+.|++++|.+++..| +..+++|++|++++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 5777777777777644 5667777777777777777764443 66777777777777766532110
Q ss_pred ---cCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCC-CCCCCceEEcccCcccccCCCCCCC
Q 046860 119 ---EVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLG-NLTNLQQLILFSNNLSGSIPPSLEY 194 (234)
Q Consensus 119 ---~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~ 194 (234)
....+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++. +....+
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l 190 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVF 190 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccC
Confidence 012367899999999999987788889999999999999999987777775 789999999999999966 444458
Q ss_pred CCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 195 PMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 195 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++|+.|++++|.+++.+| .+..+++|+.|++++|.|++
T Consensus 191 ~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp TTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE
T ss_pred CCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc
Confidence 999999999999998544 58899999999999999863
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=7e-21 Score=144.66 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=120.1
Q ss_pred CCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCc
Q 046860 72 FSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLV 151 (234)
Q Consensus 72 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 151 (234)
...+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 355678888888888887 555 5778888888888888765 32 4677888889999988888866777888888899
Q ss_pred EEEcccCcCccCCCccCCCCCCCceEEcccCc-ccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCC
Q 046860 152 VLSLFFNHLNGSVPPSLGNLTNLQQLILFSNN-LSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASL 229 (234)
Q Consensus 152 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N 229 (234)
+|++++|.+++..+..+..+++|++|++++|. ++ .++ .+. +++|+.|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 99999988887677778888899999999887 55 445 344 8889999999999887 33 5788899999999999
Q ss_pred ccCC
Q 046860 230 VFLD 233 (234)
Q Consensus 230 ~l~~ 233 (234)
+|.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8864
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1e-19 Score=140.69 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=113.4
Q ss_pred ceeeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeec
Q 046860 40 CAWSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGG 109 (234)
Q Consensus 40 c~~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (234)
|.|..+.|.. ...++.|++++|.+++..+...|..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5677777742 224678888888887664345577888888888888888766666788888888888888
Q ss_pred ccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCccccc
Q 046860 110 DQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGS 187 (234)
Q Consensus 110 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 187 (234)
|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 888755555677888888888888888866677788888888888888888876677888888888888888887643
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1e-19 Score=160.17 Aligned_cols=180 Identities=20% Similarity=0.187 Sum_probs=150.4
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCC-CccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 53 VIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTI-PPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 53 ~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
++.+++..+.... . +..+..++.|+.+++..+...... +..+..+++++.++++.|.+....+..+..++++++|++
T Consensus 399 L~~L~~~~~~~~~-~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 399 LKYLDLSFNGVIT-M-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp CCEEECCSCSEEE-E-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhcccccccc-c-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 3444444444332 2 345667888888888887765443 346788899999999999999777888889999999999
Q ss_pred ccCcCC-CCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 132 DTNQLD-GSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 132 ~~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
++|.+. ...|..|..+++|++|++++|.+++..|..|.++++|++|+|++|.+++..+..+. +++|+.|++++|.+++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 999754 35677899999999999999999988899999999999999999999988777777 9999999999999999
Q ss_pred cCCccCCCC-CCcCEEeccCCccCCC
Q 046860 210 YLPHNVCRG-SMCCRFSLASLVFLDG 234 (234)
Q Consensus 210 ~~~~~~~~~-~~L~~L~l~~N~l~~~ 234 (234)
..|..+..+ ++|+.|+|++|+|++|
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999889887 6899999999999875
No 83
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=1.6e-20 Score=154.36 Aligned_cols=171 Identities=26% Similarity=0.377 Sum_probs=88.3
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCC--------------------ccCCCCCCCcEEEeecc
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIP--------------------PQISNLTNLTTLYFGGD 110 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~l~~L~~L~l~~n 110 (234)
.+++.|+++++.+.+.. .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 155 ~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp TTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcEEEecCCCcCCch---hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence 34556666665554322 14455555555555555542111 01444555555555555
Q ss_pred cccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCC
Q 046860 111 QFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPP 190 (234)
Q Consensus 111 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 190 (234)
.+++ .+. +..+++|++|++++|.++. + +.+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+.
T Consensus 232 ~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChh
Confidence 5552 222 4555555555555555552 2 234555556666666655553 2 2345555666666666665544444
Q ss_pred CCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 191 SLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 191 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
.+. +++|+.|++++|.+++..| +..+++|+.|++++|.|+
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 444 5666666666666655433 555666666666666654
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=7.1e-20 Score=151.03 Aligned_cols=193 Identities=17% Similarity=0.147 Sum_probs=150.6
Q ss_pred ceeeeEEeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCC-ccCCCCCCCcE-EEe
Q 046860 40 CAWSGISCND----------AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIP-PQISNLTNLTT-LYF 107 (234)
Q Consensus 40 c~~~g~~~~~----------~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l 107 (234)
|.+..|.|+. ..+++.|+|++|.++. +++..|.++++|++|++++|.+.+.++ .+|.+++++.. +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 6888888842 2468999999999985 437789999999999999999865554 56788988776 566
Q ss_pred ecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccc-CcCccCCCccCCCCC-CCceEEcccCccc
Q 046860 108 GGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFF-NHLNGSVPPSLGNLT-NLQQLILFSNNLS 185 (234)
Q Consensus 108 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~-~L~~L~L~~n~l~ 185 (234)
..|+++...|..|..+++|++|++++|++....+..+.....+..+++.+ +.+....+..+..+. .++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77899877778899999999999999999855555566677788888866 456644444566654 6888999999998
Q ss_pred ccCCCCCCCCCCCeEeccc-CcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 186 GSIPPSLEYPMLTTLNLDF-NHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 186 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
...+..+...+|+.+++.+ |.++...+..|..+++|+.|||++|+|+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 6655555577888999875 56666444667899999999999998864
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=4.8e-20 Score=161.91 Aligned_cols=168 Identities=24% Similarity=0.301 Sum_probs=138.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
..++.|+++++.+.. + ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ +| .+..+++|++|+
T Consensus 43 ~~L~~L~l~~n~i~~-l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-V--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCC-C--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-C--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 458889999998864 2 357889999999999999885443 7889999999999999884 43 688899999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.+.. + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++..| +. +++|+.|++++|.+++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 99999884 3 4578889999999999998843 568889999999999999986655 44 8899999999999987
Q ss_pred cCCccCCCCCCcCEEeccCCccCC
Q 046860 210 YLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 210 ~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
. + .+..+++|+.|+|++|.+++
T Consensus 190 l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 L-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp C-G-GGTTCTTCSEEECCSEEEEC
T ss_pred C-h-HHccCCCCCEEEccCCcCcC
Confidence 4 3 48889999999999998765
No 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=8.9e-20 Score=149.91 Aligned_cols=175 Identities=24% Similarity=0.294 Sum_probs=123.4
Q ss_pred CCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCC-----------
Q 046860 49 DAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIP----------- 117 (234)
Q Consensus 49 ~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----------- 117 (234)
...+++.|++++|.....+ ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 205 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFT 205 (347)
T ss_dssp TCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred cCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceee
Confidence 3457999999999765444 448899999999999999874333 7788999999999988873221
Q ss_pred ---------ccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccC
Q 046860 118 ---------PEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSI 188 (234)
Q Consensus 118 ---------~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 188 (234)
..+..+++|++|++++|.++. ++. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.
T Consensus 206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~- 280 (347)
T 4fmz_A 206 AYVNQITDITPVANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI- 280 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-
T ss_pred cccCCCCCCchhhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-
Confidence 013344556666666666652 333 5666667777777776663 2 3466677777777777777643
Q ss_pred CCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 189 PPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 189 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+ .+. +++|+.|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 281 ~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 281 S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 3 233 7788888888888877777777788888888888888765
No 87
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=7.9e-22 Score=176.84 Aligned_cols=211 Identities=24% Similarity=0.250 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCCCceeeeEEeCCCCCEEEEEcCCCCcccc---------------
Q 046860 2 NEEADALLKWKASLQSHNQSLLPSWPNATTNVSSKISPCAWSGISCNDAGRVIKISLPKIGLKGT--------------- 66 (234)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~g~~~~~~~~~~~L~l~~~~l~~~--------------- 66 (234)
..+..+++++..++...++..-..|... ....+.|.+..+.. .+++.|+|.++.+...
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i 203 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGD------STPSGTATNSAVST-PLTPKIELFANGKDEANQALLQHKKLSQYSI 203 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCC------CCccccCCCceecC-CccceEEeeCCCCCcchhhHhhcCccCcccc
Confidence 4567899999999887777777777332 45566787776654 4466666665555421
Q ss_pred -----------cCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCc
Q 046860 67 -----------LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQ 135 (234)
Q Consensus 67 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 135 (234)
+++..+..+..|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.
T Consensus 204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 11233444445555555555544 34444444555555555555554 444445555555555555555
Q ss_pred CCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-C-CCCCeEecccCcccccCCc
Q 046860 136 LDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-Y-PMLTTLNLDFNHFTSYLPH 213 (234)
Q Consensus 136 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~-~~L~~L~l~~n~l~~~~~~ 213 (234)
++ .+|..|..+++|++|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+. . ..+..+++++|.+++.+|.
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 55 44545555555555555555544 4444455555555555555555444443332 1 1112244455555444443
Q ss_pred cCCCCCCcCEEeccCC
Q 046860 214 NVCRGSMCCRFSLASL 229 (234)
Q Consensus 214 ~~~~~~~L~~L~l~~N 229 (234)
.|+.|+++.|
T Consensus 360 ------~l~~l~l~~n 369 (727)
T 4b8c_D 360 ------ERRFIEINTD 369 (727)
T ss_dssp ------C---------
T ss_pred ------ccceeEeecc
Confidence 3455666655
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=4.8e-19 Score=146.66 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=131.8
Q ss_pred CEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCc-CCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccc
Q 046860 79 AYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVG-LMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFF 157 (234)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 157 (234)
+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.++...+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57899999988 5676553 4689999999999976666676 899999999999999977677899999999999999
Q ss_pred CcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccC---CCCCCcCEEeccCCccCC
Q 046860 158 NHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNV---CRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 158 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~N~l~~ 233 (234)
|.++...+..|..+++|++|+|++|.+++..+..+. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|+|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999977777899999999999999999988888887 9999999999999998555555 579999999999999874
No 89
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=2e-19 Score=153.71 Aligned_cols=150 Identities=29% Similarity=0.501 Sum_probs=77.4
Q ss_pred CCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCc
Q 046860 72 FSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLV 151 (234)
Q Consensus 72 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 151 (234)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. +. +..+++|+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~ 312 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLT 312 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCS
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCC
Confidence 3344444444444444442221 44445555555555555422 22 44455555555555555532 22 44555555
Q ss_pred EEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCc
Q 046860 152 VLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLV 230 (234)
Q Consensus 152 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~ 230 (234)
+|++++|.+.+..| +..+++|++|++++|.+++. + .+. +++|+.|++++|.+++..| +..+++|+.|++++|.
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 55555555553322 44555666666666655533 2 222 5666666666666666544 5666666666666666
Q ss_pred cCC
Q 046860 231 FLD 233 (234)
Q Consensus 231 l~~ 233 (234)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=2e-18 Score=147.21 Aligned_cols=163 Identities=21% Similarity=0.221 Sum_probs=92.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|++++|.+++. .+..+++|++|++++|.+++. + +..+++|++|++++|.+++ +| +..+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 4566666666666542 255666666666666666532 2 5556666666666666653 22 55555666666
Q ss_pred cccCcCCCCCC--------------------ccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCC
Q 046860 131 IDTNQLDGSIP--------------------PELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPP 190 (234)
Q Consensus 131 l~~n~~~~~~p--------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 190 (234)
+++|.+++ ++ -.+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. +
T Consensus 134 l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~- 207 (457)
T 3bz5_A 134 CARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D- 207 (457)
T ss_dssp CTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C-
T ss_pred CCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c-
Confidence 66655553 21 023344555555555555553 33 45555666666666665543 1
Q ss_pred CCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 191 SLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 191 ~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+. +++|+.|++++|.+++ +| +..+++|+.|++++|+|++
T Consensus 208 -l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 208 -LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred -cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 33 6666777777777666 44 5666777777777776653
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.7e-19 Score=137.04 Aligned_cols=150 Identities=21% Similarity=0.289 Sum_probs=128.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|+++++.++ .+ + .+..+++|+.|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l-~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DL-T-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CC-T-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-Ch-H-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 46899999999998 44 3 6888999999999999775 344788999999999999999977788899999999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCc-CccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNH-LNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFT 208 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~ 208 (234)
+++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++ ++ .+. +++|+.|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 99999997778889999999999999998 66 555 68899999999999999985 44 444 999999999999986
Q ss_pred c
Q 046860 209 S 209 (234)
Q Consensus 209 ~ 209 (234)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=1.1e-19 Score=144.09 Aligned_cols=163 Identities=23% Similarity=0.248 Sum_probs=89.1
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
+.++++++.+++.. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++++ ++. +..+++|++|++++
T Consensus 22 ~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHhcCCCccccc---chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 34445555554322 3445566666666666655 333 45556666666666666653 222 55566666666666
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCC
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLP 212 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 212 (234)
|.+++ +|.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++|.+++. + .+. +++|+.|++++|.+++.
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 66652 3322 22 556666666666653 22 355566666666666666533 2 233 56666666666666554
Q ss_pred ccCCCCCCcCEEeccCCccC
Q 046860 213 HNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 213 ~~~~~~~~L~~L~l~~N~l~ 232 (234)
..+..+++|+.|++++|.++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 34556666666666666554
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=4.1e-19 Score=151.78 Aligned_cols=167 Identities=26% Similarity=0.331 Sum_probs=110.8
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
+++.|++++|.+.+.. .+..+++|+.|++++|.+++ + ..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 200 ~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 200 NLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCEEEecCCcccccc---cccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 4555555555554432 14455666666666666552 2 245566777777777777663322 666777777777
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccccc
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
++|.+.+ ++. +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+++..| +. +++|+.|++++|.+++.
T Consensus 273 ~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 273 GANQISN-ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 7777763 333 66777777777777777743 22 6677788888888888776544 34 78888888888888764
Q ss_pred CCccCCCCCCcCEEeccCCccCC
Q 046860 211 LPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 211 ~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
..+..+++|+.|++++|++++
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCB
T ss_pred --hhhccCCCCCEEeCCCCccCc
Confidence 357788888888888888765
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=2.7e-18 Score=146.42 Aligned_cols=143 Identities=22% Similarity=0.256 Sum_probs=108.3
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
..+++.|+++++.+++. + .+..+++|++|++++|.+++ ++ +..+++|++|++++|.+++ ++ +..+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEE
Confidence 35699999999999863 3 68899999999999999985 34 8899999999999999985 44 8899999999
Q ss_pred EcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccc
Q 046860 130 HIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFT 208 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~ 208 (234)
++++|.+++ +| +..+++|++|++++|.+++. + +..+++|++|++++|...+.++ +. +++|+.|++++|.++
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccc
Confidence 999999995 44 88999999999999999853 2 5555566666665553332321 22 444555555555444
Q ss_pred c
Q 046860 209 S 209 (234)
Q Consensus 209 ~ 209 (234)
+
T Consensus 184 ~ 184 (457)
T 3bz5_A 184 E 184 (457)
T ss_dssp C
T ss_pred e
Confidence 4
No 95
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=9.4e-19 Score=132.40 Aligned_cols=129 Identities=28% Similarity=0.330 Sum_probs=86.6
Q ss_pred CEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCc-cCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccc
Q 046860 79 AYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPP-EVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFF 157 (234)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 157 (234)
+.++++++.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 55654432 677777777777644333 366677777777777777766566677777777777777
Q ss_pred CcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccccc
Q 046860 158 NHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 158 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
|.+++..+..+..+++|++|++++|.+++..|..+. +++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777766666666677777777777777766666665 66777777777766653
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.4e-18 Score=151.37 Aligned_cols=170 Identities=26% Similarity=0.340 Sum_probs=101.9
Q ss_pred eeeeE-EeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCcc
Q 046860 41 AWSGI-SCNDAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPE 119 (234)
Q Consensus 41 ~~~g~-~~~~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 119 (234)
.|.++ .|.. ++++.|++++|.+++ + +..+ +++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-l-p~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-L-PDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-C-CSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-c-CHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence 68887 5542 357777777777765 4 3323 255666666666665 344 234555555555555553 333
Q ss_pred Cc------------------CCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEccc
Q 046860 120 VG------------------LMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFS 181 (234)
Q Consensus 120 ~~------------------~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 181 (234)
+. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++
T Consensus 118 l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 118 LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 32 34445555555555552 333 34566666666666663 454 44 6777777777
Q ss_pred CcccccCCCCCCCCCC-------CeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 182 NNLSGSIPPSLEYPML-------TTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 182 n~l~~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
|.++ .+|. +.- +| +.|++++|.|+. +|..+..+++|+.|+|++|.|++
T Consensus 190 N~L~-~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 190 NLLE-SLPA-VPV-RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCS-SCCC-CC---------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCC-chhh-HHH-hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCC
Confidence 7776 4444 221 45 888888888875 67667778888888888888864
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3.5e-21 Score=157.61 Aligned_cols=176 Identities=19% Similarity=0.192 Sum_probs=88.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccC-CCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGT-IPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
+++.++++++.+.+.. + .+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~-~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPL-A-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCC-C-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccc-h-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4556666666555443 2 234556666666666665433 444455566666666666665544445555566666666
Q ss_pred cccC-cCCC-CCCccccCCCCCcEEEcccC-cCccC-CCccCCCCC-CCceEEcccC--ccc-ccCCCCCC-CCCCCeEe
Q 046860 131 IDTN-QLDG-SIPPELGQLSSLVVLSLFFN-HLNGS-VPPSLGNLT-NLQQLILFSN--NLS-GSIPPSLE-YPMLTTLN 201 (234)
Q Consensus 131 l~~n-~~~~-~~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~L~~n--~l~-~~~~~~~~-~~~L~~L~ 201 (234)
+++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+. +++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6665 3442 13333445555566666555 55432 233344445 5555555555 222 12222222 44555555
Q ss_pred cccCc-ccccCCccCCCCCCcCEEeccCC
Q 046860 202 LDFNH-FTSYLPHNVCRGSMCCRFSLASL 229 (234)
Q Consensus 202 l~~n~-l~~~~~~~~~~~~~L~~L~l~~N 229 (234)
+++|. +++..+..+..+++|++|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55554 44333444444455555555554
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=5.8e-19 Score=153.78 Aligned_cols=135 Identities=23% Similarity=0.275 Sum_probs=110.5
Q ss_pred CCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcc
Q 046860 77 HLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLF 156 (234)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 156 (234)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999985 77655 379999999999999 677 457899999999999995 777 654 89999999
Q ss_pred cCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccCC
Q 046860 157 FNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 157 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.|+.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence 999985 666 57889999999998885 454 46788888888888877 555 55 788888888887763
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=3.4e-20 Score=150.88 Aligned_cols=170 Identities=20% Similarity=0.153 Sum_probs=143.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|++++|.+++.. +..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence 46999999999998755 6788999999999999999985543 8899999999999999984 33 348999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC--CCCCCeEecccCccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE--YPMLTTLNLDFNHFT 208 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l~~n~l~ 208 (234)
+++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.++
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 999999854333 367899999999999977677888999999999999999977666553 799999999999998
Q ss_pred ccCCccCCCCCCcCEEeccCCccCC
Q 046860 209 SYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 209 ~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+. +. ...+++|++|++++|.|++
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 183 DV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred cc-cc-ccccccCCEEECCCCcCCc
Confidence 75 32 3458999999999999864
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3.2e-21 Score=157.80 Aligned_cols=182 Identities=18% Similarity=0.133 Sum_probs=148.4
Q ss_pred CCCEEEEEcCCCCcccc-cCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecc-ccccc-CCccCcCCCCC
Q 046860 50 AGRVIKISLPKIGLKGT-LHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGD-QFSGN-IPPEVGLMSHL 126 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L 126 (234)
..+++.|++++|.+++. + +..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTL-HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHH-HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEccCCCcCHHHH-HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 35799999999998765 5 667888999999999999988777778889999999999999 67642 55567789999
Q ss_pred cEEEcccC-cCCCC-CCccccCCC-CCcEEEcccC--cCc-cCCCccCCCCCCCceEEcccCc-ccccCCCCCC-CCCCC
Q 046860 127 ELLHIDTN-QLDGS-IPPELGQLS-SLVVLSLFFN--HLN-GSVPPSLGNLTNLQQLILFSNN-LSGSIPPSLE-YPMLT 198 (234)
Q Consensus 127 ~~L~l~~n-~~~~~-~p~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~-~~~L~ 198 (234)
++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+. +++|+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 99999999 88743 466677889 9999999999 454 3456667789999999999999 6656565666 89999
Q ss_pred eEecccCc-ccccCCccCCCCCCcCEEeccCCccCC
Q 046860 199 TLNLDFNH-FTSYLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 199 ~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.|++++|. +.......+..+++|+.|++++| +++
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence 99999995 43333335788999999999998 665
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=5.7e-19 Score=142.08 Aligned_cols=163 Identities=22% Similarity=0.343 Sum_probs=135.6
Q ss_pred EEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCc
Q 046860 56 ISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQ 135 (234)
Q Consensus 56 L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 135 (234)
+.+....+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++ ++. +..+++|++|++++|.
T Consensus 29 ~~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAV---TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSEE---CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred HHhcCCCccccc---chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc
Confidence 345555555433 34568899999999999974 44 47889999999999999985 444 8899999999999999
Q ss_pred CCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCcc
Q 046860 136 LDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHN 214 (234)
Q Consensus 136 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~ 214 (234)
++. ++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++. + .+. +++|+.|++++|.+++..+
T Consensus 102 l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 102 VKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-T-VLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-h-hhccCCCCCEEEccCCccccchh--
Confidence 984 44 48899999999999999984 3 5688899999999999999854 3 444 9999999999999988554
Q ss_pred CCCCCCcCEEeccCCccCC
Q 046860 215 VCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 215 ~~~~~~L~~L~l~~N~l~~ 233 (234)
+..+++|+.|++++|.|++
T Consensus 174 l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp GTTCTTCCEEECCSSCCCB
T ss_pred hcCCCccCEEECCCCcCCC
Confidence 8899999999999999875
No 102
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=5.2e-18 Score=128.44 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=83.0
Q ss_pred CEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccC
Q 046860 79 AYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFN 158 (234)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 158 (234)
+.++++++.++ .+|..+. +.|++|++++|.++ .+|..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45677777766 4554432 46777777777776 56666666777777777777777555556666777777777777
Q ss_pred cCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 159 HLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 159 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
.+++..+..|..+++|++|+|++|.++...+..+. +++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 77655555666667777777777777654444454 6666667766666643
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=2.7e-21 Score=161.43 Aligned_cols=182 Identities=19% Similarity=0.166 Sum_probs=112.3
Q ss_pred CCEEEEEcCCCCccc----ccCCCcCCCCCCCCEEEccCCccccCCCcc----CCCC---------CCCcEEEeeccccc
Q 046860 51 GRVIKISLPKIGLKG----TLHDFSFSSFPHLAYLDLSYNELFGTIPPQ----ISNL---------TNLTTLYFGGDQFS 113 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~l~ 113 (234)
.+++.|+|++|.+.+ .+ +..+..+++|+.|++++|.++...+.. +..+ ++|++|++++|+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPL-IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHH-HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CcccEEECCCCcCCHHHHHHH-HHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 456666666666654 23 334555666666666666654222222 2222 66777777777665
Q ss_pred -ccCC---ccCcCCCCCcEEEcccCcCCC-----CCCccccCCCCCcEEEcccCcCc----cCCCccCCCCCCCceEEcc
Q 046860 114 -GNIP---PEVGLMSHLELLHIDTNQLDG-----SIPPELGQLSSLVVLSLFFNHLN----GSVPPSLGNLTNLQQLILF 180 (234)
Q Consensus 114 -~~~p---~~~~~l~~L~~L~l~~n~~~~-----~~p~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~ 180 (234)
..++ ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|+|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 2222 234456677777777776652 22225666777777777777774 3456666777777778877
Q ss_pred cCccccc----CCCCC--C-CCCCCeEecccCcccc----cCCccC-CCCCCcCEEeccCCccCC
Q 046860 181 SNNLSGS----IPPSL--E-YPMLTTLNLDFNHFTS----YLPHNV-CRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 181 ~n~l~~~----~~~~~--~-~~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~L~l~~N~l~~ 233 (234)
+|.+++. ++..+ . +++|+.|++++|.+++ .+|..+ .++++|++|++++|.|++
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 7777644 23332 2 5777888888888776 356555 457888888888888765
No 104
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1e-17 Score=126.69 Aligned_cols=173 Identities=22% Similarity=0.178 Sum_probs=130.1
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCc-cCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPP-QISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHID 132 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 132 (234)
+.++++++.++ .+ |..+. .+++.|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 46788888885 45 44443 3899999999999865554 48899999999999999998778899999999999999
Q ss_pred cCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCC
Q 046860 133 TNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLP 212 (234)
Q Consensus 133 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 212 (234)
+|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+.......++...+..+......|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 99999777778999999999999999999888999999999999999999998654321111112222333444444444
Q ss_pred ccCCCCCCcCEEeccCCccCC
Q 046860 213 HNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 213 ~~~~~~~~L~~L~l~~N~l~~ 233 (234)
..+. .....++..+.+++
T Consensus 167 ~~l~---~~~l~~l~~~~~~C 184 (192)
T 1w8a_A 167 SKVR---DVQIKDLPHSEFKC 184 (192)
T ss_dssp TTTT---TSBGGGSCTTTCCC
T ss_pred hHHc---CCChhhCcHhhcCc
Confidence 4333 33344566665543
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.5e-20 Score=156.94 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=97.0
Q ss_pred CCCCCCCEEEccCCcccc----CCCccCCCCCCCcEEEeecccccccCCcc----CcCC---------CCCcEEEcccCc
Q 046860 73 SSFPHLAYLDLSYNELFG----TIPPQISNLTNLTTLYFGGDQFSGNIPPE----VGLM---------SHLELLHIDTNQ 135 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~----~~~l---------~~L~~L~l~~n~ 135 (234)
..+++|+.|++++|.+.. .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455666666666666653 23445555666666666666665322222 2222 667777777776
Q ss_pred CC-CCCC---ccccCCCCCcEEEcccCcCcc-----CCCccCCCCCCCceEEcccCccc----ccCCCCCC-CCCCCeEe
Q 046860 136 LD-GSIP---PELGQLSSLVVLSLFFNHLNG-----SVPPSLGNLTNLQQLILFSNNLS----GSIPPSLE-YPMLTTLN 201 (234)
Q Consensus 136 ~~-~~~p---~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~-~~~L~~L~ 201 (234)
++ ..++ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..+|..+. +++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 65 2233 244556677777777776652 23335666777777777777774 34454444 67777777
Q ss_pred cccCccccc----CCccC--CCCCCcCEEeccCCccCC
Q 046860 202 LDFNHFTSY----LPHNV--CRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 202 l~~n~l~~~----~~~~~--~~~~~L~~L~l~~N~l~~ 233 (234)
+++|.+++. ++..+ +.+++|++|+|++|.|++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 777777654 34444 337777778887777764
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=1.8e-18 Score=127.93 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=94.8
Q ss_pred CCCCCEEEccCCccc-cCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEE
Q 046860 75 FPHLAYLDLSYNELF-GTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVL 153 (234)
Q Consensus 75 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 153 (234)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888876 56676777778888888888887743 567777888888888888776566666667788888
Q ss_pred EcccCcCccCC-CccCCCCCCCceEEcccCcccccCC---CCCC-CCCCCeEecccCcccc
Q 046860 154 SLFFNHLNGSV-PPSLGNLTNLQQLILFSNNLSGSIP---PSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 154 ~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~-~~~L~~L~l~~n~l~~ 209 (234)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+. +++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888777421 1566777777777777777774433 2344 6777777777777654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.4e-18 Score=150.22 Aligned_cols=165 Identities=22% Similarity=0.341 Sum_probs=138.0
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
..+.+..+.+.+.. .+..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+++. ++ +..+++|++|++++
T Consensus 24 ~~l~l~~~~i~~~~---~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHTTCSCTTSEE---CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred HHHhccCCCccccc---chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence 34455666665443 3566889999999999987 344 588999999999999999854 33 88999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCC
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLP 212 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~ 212 (234)
|.+.. +| .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++. + .+. +++|+.|++++|.+.+..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-T-VLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-G-GGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-h-hhcccCCCCEEECcCCcCCCchh
Confidence 99984 44 68899999999999999984 3 4588999999999999999864 3 444 9999999999999998665
Q ss_pred ccCCCCCCcCEEeccCCccCC
Q 046860 213 HNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 213 ~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+..+++|+.|+|++|.|++
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCB
T ss_pred --hccCCCCCEEECcCCCCCC
Confidence 8999999999999999875
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=4.5e-17 Score=121.37 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=82.2
Q ss_pred CEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccC
Q 046860 79 AYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFN 158 (234)
Q Consensus 79 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 158 (234)
+.++++++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 56677777665 344333 256777777777776444445566777777777777776444444566777777777777
Q ss_pred cCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccccc
Q 046860 159 HLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 159 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|.+.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 77654444566667777777777777654444444 66677777777766654
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=3.2e-20 Score=153.71 Aligned_cols=181 Identities=21% Similarity=0.218 Sum_probs=89.5
Q ss_pred CEEEEEcCCCCcccccCC----CcCCCCC-CCCEEEccCCccccCCCccCCCC-----CCCcEEEeecccccccCCcc--
Q 046860 52 RVIKISLPKIGLKGTLHD----FSFSSFP-HLAYLDLSYNELFGTIPPQISNL-----TNLTTLYFGGDQFSGNIPPE-- 119 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~-- 119 (234)
.++.|++++|.+++.. . ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSIS-TVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSC-HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCChHH-HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 3666666666665432 2 3445555 56666666666654444444332 56666666666665433332
Q ss_pred --CcCC-CCCcEEEcccCcCCCCCCccc----cC-CCCCcEEEcccCcCccCCC----ccCCCCC-CCceEEcccCcccc
Q 046860 120 --VGLM-SHLELLHIDTNQLDGSIPPEL----GQ-LSSLVVLSLFFNHLNGSVP----PSLGNLT-NLQQLILFSNNLSG 186 (234)
Q Consensus 120 --~~~l-~~L~~L~l~~n~~~~~~p~~l----~~-l~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~L~~n~l~~ 186 (234)
+..+ ++|++|++++|.++...+..+ .. .++|++|++++|.+.+..+ ..+...+ +|++|++++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 2223 566666666666654333222 22 2456666666666553221 2223333 56666666665554
Q ss_pred cCCCCCC-----C-CCCCeEecccCccccc----CCccCCC-CCCcCEEeccCCccCC
Q 046860 187 SIPPSLE-----Y-PMLTTLNLDFNHFTSY----LPHNVCR-GSMCCRFSLASLVFLD 233 (234)
Q Consensus 187 ~~~~~~~-----~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~N~l~~ 233 (234)
..+..+. . ++|+.|++++|.+.+. ++..+.. .++|++|+|++|.|++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 3332221 2 3555566665555542 2222222 3355555555555543
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=7.1e-18 Score=124.66 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=63.1
Q ss_pred CEEEEEcCCCCcc-cccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 52 RVIKISLPKIGLK-GTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 52 ~~~~L~l~~~~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
+++.|++++|.++ +.+ +..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3555555555554 333 33344555555555555555432 3444555555555555555533444444455555555
Q ss_pred cccCcCCCCCC--ccccCCCCCcEEEcccCcCccCCC---ccCCCCCCCceEEcccCccc
Q 046860 131 IDTNQLDGSIP--PELGQLSSLVVLSLFFNHLNGSVP---PSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 131 l~~n~~~~~~p--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~ 185 (234)
+++|.+++ +| ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555542 22 344455555555555555543222 24445555555555555444
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=6.4e-17 Score=142.39 Aligned_cols=78 Identities=26% Similarity=0.250 Sum_probs=56.1
Q ss_pred CCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEecc
Q 046860 148 SSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLA 227 (234)
Q Consensus 148 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 227 (234)
++|++|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+|+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 445566666665552 34 33466777777777776 3343 4677889999999988 478788899999999999
Q ss_pred CCccCC
Q 046860 228 SLVFLD 233 (234)
Q Consensus 228 ~N~l~~ 233 (234)
+|.|++
T Consensus 293 ~N~l~~ 298 (622)
T 3g06_A 293 GNPLSE 298 (622)
T ss_dssp SCCCCH
T ss_pred CCCCCC
Confidence 998864
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=9.4e-17 Score=136.76 Aligned_cols=140 Identities=25% Similarity=0.296 Sum_probs=64.4
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
+++.|++++|.+++ + + .+.++++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .+..+++|++|++
T Consensus 132 ~L~~L~L~~n~l~~-l-p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-L-P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS-C-C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-C-c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 34444444444443 3 2 34455555555555555442 3322 1245555555555442 33 3445555555555
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccc
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTS 209 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 209 (234)
++|.+++ +|... ++|++|++++|.+. .+|. +..+++|++|++++|.+++ +|.. .++|+.|++++|.+++
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCCSC
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc--ccccCEEECCCCcccc
Confidence 5555442 23211 34555555555554 3442 5555566666666665553 2221 2344444444444443
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=1.2e-16 Score=136.05 Aligned_cols=139 Identities=25% Similarity=0.355 Sum_probs=61.8
Q ss_pred CCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcc
Q 046860 77 HLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLF 156 (234)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 156 (234)
+|++|++++|.+++ +| .+..+++|++|++++|+++ .+|.. ..+|++|++++|.+++ +| .+..+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 44444444444442 33 3444444444444444444 23321 1244444555444442 33 34445555555555
Q ss_pred cCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 157 FNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 157 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+|.+++ +|... ++|++|++++|.++ .+|....+++|++|++++|.+++ +|.. +++|+.|++++|+++
T Consensus 204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 204 NNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp SSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 555442 23211 24555555555554 33431125555555555555554 2221 234444444444443
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.1e-19 Score=150.59 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=139.8
Q ss_pred EEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCC----ccCCCCC-CCcEEEeecccccccCCccCcCC-----C
Q 046860 55 KISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIP----PQISNLT-NLTTLYFGGDQFSGNIPPEVGLM-----S 124 (234)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~ 124 (234)
...++.+.+++.+ +..+...++|+.|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPV-EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHH-HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHH-HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3578899998877 6666667779999999999986555 6777888 99999999999986656655554 8
Q ss_pred CCcEEEcccCcCCCCCCccc----cCC-CCCcEEEcccCcCccCCCccC----CC-CCCCceEEcccCcccccCCCCC--
Q 046860 125 HLELLHIDTNQLDGSIPPEL----GQL-SSLVVLSLFFNHLNGSVPPSL----GN-LTNLQQLILFSNNLSGSIPPSL-- 192 (234)
Q Consensus 125 ~L~~L~l~~n~~~~~~p~~l----~~l-~~L~~L~l~~n~l~~~~~~~~----~~-~~~L~~L~L~~n~l~~~~~~~~-- 192 (234)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. ..+|++|++++|.+++.....+
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999986665543 444 899999999999986554433 34 3699999999999985433322
Q ss_pred --C-C-CCCCeEecccCcccccCCccC----CCC-CCcCEEeccCCccCC
Q 046860 193 --E-Y-PMLTTLNLDFNHFTSYLPHNV----CRG-SMCCRFSLASLVFLD 233 (234)
Q Consensus 193 --~-~-~~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~N~l~~ 233 (234)
. . ++|++|++++|.+++..+..+ ..+ ++|+.|+|++|.|++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 2 3 489999999999988665433 445 599999999999876
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=7.4e-17 Score=122.05 Aligned_cols=128 Identities=24% Similarity=0.258 Sum_probs=111.1
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
+.++++++.++ .+ |..+ .+.|+.|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 36788888886 34 3333 368999999999998 7788999999999999999999977777899999999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccc
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSG 186 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 186 (234)
|.++...|..|..+++|++|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99997777789999999999999999996655678899999999999998863
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=8.1e-19 Score=157.36 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=120.7
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
...++.|+|++|.+. .+ +..+..+++|+.|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|
T Consensus 223 l~~L~~L~Ls~n~l~-~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCEEECTTSCCS-CC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred CCCCcEEECCCCCCC-CC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 356899999999987 55 556668999999999999998 88999999999999999999999 789999999999999
Q ss_pred EcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCC-CCceEEcccCcccccCCCCCCCCCCCeEecccC---
Q 046860 130 HIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLT-NLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFN--- 205 (234)
Q Consensus 130 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n--- 205 (234)
++++|.++ .+|..|..+++|++|+|++|.+.+.+|..+..+. .+..+++++|.+++.+|.. |..|++++|
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-----l~~l~l~~n~~~ 372 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-----RRFIEINTDGEP 372 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------
T ss_pred ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-----cceeEeeccccc
Confidence 99999998 8898999999999999999999988777665432 2234789999998877754 445556555
Q ss_pred -----cccccCCccCCCCCCcCEEeccCCccC
Q 046860 206 -----HFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 206 -----~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
.+.+..+..+..+..+....+++|.+.
T Consensus 373 ~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 373 QREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------------------CCC
T ss_pred ccccCCccccccchhhcccccceeeeeccccc
Confidence 333333344556667777888888774
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5.7e-17 Score=128.52 Aligned_cols=146 Identities=23% Similarity=0.307 Sum_probs=123.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.+++.|++++|.++. + + .+..+++|+.|++++|.+++. +. +..+++|++|++++|++++ +|.. .. ++|++|+
T Consensus 41 ~~L~~L~l~~n~i~~-l-~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-L-A-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCCCC-C-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred CcCcEEECcCCCccc-c-h-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 568999999999874 4 3 688899999999999999854 43 8899999999999999984 5443 33 8999999
Q ss_pred cccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccc
Q 046860 131 IDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 131 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
+++|.+++ ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++. ..+. +++|+.|++++|.+.+
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 99999985 43 58899999999999999985 44 688899999999999999866 4444 8999999999999887
Q ss_pred c
Q 046860 210 Y 210 (234)
Q Consensus 210 ~ 210 (234)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 5
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=4.9e-18 Score=123.09 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=60.9
Q ss_pred CCCCEEEccCCccc-cCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEE
Q 046860 76 PHLAYLDLSYNELF-GTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLS 154 (234)
Q Consensus 76 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 154 (234)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 34444445555555555555555422 3344444555555555544433444333444444444
Q ss_pred cccCcCccC-CCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcccccCC---ccCCCCCCcCEEecc
Q 046860 155 LFFNHLNGS-VPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHFTSYLP---HNVCRGSMCCRFSLA 227 (234)
Q Consensus 155 l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~ 227 (234)
+++|.+++. .+..+.. +++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~-----------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKK-----------------------LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGG-----------------------CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhh-----------------------CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 444444421 1133333 5555555555555555333 244555566665554
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.2e-16 Score=117.61 Aligned_cols=115 Identities=24% Similarity=0.243 Sum_probs=99.5
Q ss_pred CCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEE
Q 046860 75 FPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLS 154 (234)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 154 (234)
.++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 47899999999999866666788999999999999999955556678999999999999999966666688999999999
Q ss_pred cccCcCccCCCccCCCCCCCceEEcccCcccccCC
Q 046860 155 LFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIP 189 (234)
Q Consensus 155 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 189 (234)
+++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999996555567889999999999999986543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.5e-17 Score=120.51 Aligned_cols=128 Identities=20% Similarity=0.226 Sum_probs=110.9
Q ss_pred CCEEEEEcCCCCcc-cccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 51 GRVIKISLPKIGLK-GTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 51 ~~~~~L~l~~~~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
.+++.|++++|.++ +.+ +..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 56899999999998 677 77889999999999999999855 678999999999999999996677777779999999
Q ss_pred EcccCcCCCC-CCccccCCCCCcEEEcccCcCccCCC---ccCCCCCCCceEEccc
Q 046860 130 HIDTNQLDGS-IPPELGQLSSLVVLSLFFNHLNGSVP---PSLGNLTNLQQLILFS 181 (234)
Q Consensus 130 ~l~~n~~~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~ 181 (234)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999852 23778999999999999999996544 4688899999998763
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.9e-20 Score=162.26 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=73.2
Q ss_pred CCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecc
Q 046860 125 HLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLD 203 (234)
Q Consensus 125 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~ 203 (234)
.|++|++++|.++ .+|. ++.+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++ +| .+. +++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 4667777777777 3555 677777777777777777 667777777777777777777774 45 344 7777777777
Q ss_pred cCcccccC-CccCCCCCCcCEEeccCCccCC
Q 046860 204 FNHFTSYL-PHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 204 ~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+|.+++.. |..++.+++|+.|+|++|.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 77777755 6667777777777777777653
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=1.3e-15 Score=134.21 Aligned_cols=153 Identities=27% Similarity=0.298 Sum_probs=93.5
Q ss_pred CCCCceeeeEEe------C-CCCCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEee
Q 046860 36 KISPCAWSGISC------N-DAGRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFG 108 (234)
Q Consensus 36 ~~~~c~~~g~~~------~-~~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (234)
..++|.|.|..+ . ....++.|+++++.++ .+ |..+. ++|+.|++++|.++ .+|. .+++|++|+++
T Consensus 18 ~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~l-p~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls 89 (622)
T 3g06_A 18 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVS 89 (622)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CC-CSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred cCCcchhccccccCcccccccCCCCcEEEecCCCcC-cc-ChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcC
Confidence 456778865322 1 1124778888888876 44 33333 67788888888776 4554 46777788888
Q ss_pred cccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccC
Q 046860 109 GDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSI 188 (234)
Q Consensus 109 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 188 (234)
+|.++ .+|. .+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|.. +++|++|++++|.+++.
T Consensus 90 ~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l- 156 (622)
T 3g06_A 90 GNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL- 156 (622)
T ss_dssp SCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCC-
T ss_pred CCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCc-
Confidence 87777 4554 5667777777777776 3444 3456666666666665 34432 25566666666655532
Q ss_pred CCCC-----------------C-CCCCCeEecccCcccc
Q 046860 189 PPSL-----------------E-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 189 ~~~~-----------------~-~~~L~~L~l~~n~l~~ 209 (234)
|... . +++|+.|++++|.+++
T Consensus 157 ~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 157 PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC
Confidence 2111 1 3677777777777765
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.1e-16 Score=131.82 Aligned_cols=161 Identities=22% Similarity=0.129 Sum_probs=113.4
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCCE-EEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcE
Q 046860 50 AGRVIKISLPKIGLKGTLHDFSFSSFPHLAY-LDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLEL 128 (234)
Q Consensus 50 ~~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 128 (234)
..+++.|+|++|.+.+.+++..|.+++.+.+ +.+..|.++...|..|..+++|++|++++|++....+..+.....+..
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 4579999999999987776678899988876 556678888777888999999999999999998544445555666777
Q ss_pred EEccc-CcCCCCCCccccCCC-CCcEEEcccCcCccCCCccCCCCCCCceEEccc-CcccccCCCCCC-CCCCCeEeccc
Q 046860 129 LHIDT-NQLDGSIPPELGQLS-SLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFS-NNLSGSIPPSLE-YPMLTTLNLDF 204 (234)
Q Consensus 129 L~l~~-n~~~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~-~~~L~~L~l~~ 204 (234)
+++.+ +.+....+..|..+. .+++|++++|.++ .++.......+|+++.+.+ |.++...+..+. +++|+.|++++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred hhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 77755 455533334455443 5777888888777 4444444456677777764 555533334444 77777777777
Q ss_pred CcccccC
Q 046860 205 NHFTSYL 211 (234)
Q Consensus 205 n~l~~~~ 211 (234)
|.++...
T Consensus 212 N~l~~lp 218 (350)
T 4ay9_X 212 TRIHSLP 218 (350)
T ss_dssp SCCCCCC
T ss_pred CCcCccC
Confidence 7776643
No 124
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.6e-19 Score=153.71 Aligned_cols=161 Identities=18% Similarity=0.087 Sum_probs=88.5
Q ss_pred CCCCCCCEEEccCCccccCC-----CccCCCCCCCcEEEeeccccccc----CCccCcCCCCCcEEEcccCcCCCCCCcc
Q 046860 73 SSFPHLAYLDLSYNELFGTI-----PPQISNLTNLTTLYFGGDQFSGN----IPPEVGLMSHLELLHIDTNQLDGSIPPE 143 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 143 (234)
..+++|+.|++++|.+.... +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+....+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 34445555555555443211 11122345555555555555422 3333444555556666555554221111
Q ss_pred cc-----CCCCCcEEEcccCcCccC----CCccCCCCCCCceEEcccCcccccCCCCCC------CCCCCeEecccCccc
Q 046860 144 LG-----QLSSLVVLSLFFNHLNGS----VPPSLGNLTNLQQLILFSNNLSGSIPPSLE------YPMLTTLNLDFNHFT 208 (234)
Q Consensus 144 l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~ 208 (234)
+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. .++|+.|++++|.++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 11 124566666666665533 334445567777777777777644332221 457888888888887
Q ss_pred c----cCCccCCCCCCcCEEeccCCccCC
Q 046860 209 S----YLPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 209 ~----~~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
+ .+|..+..+++|++|++++|+|++
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 5 566667778888888888888764
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=5.5e-17 Score=120.87 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=93.3
Q ss_pred cCCCCCCCCEEEccCCccccCCCccCCCC-CCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCC
Q 046860 71 SFSSFPHLAYLDLSYNELFGTIPPQISNL-TNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSS 149 (234)
Q Consensus 71 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~ 149 (234)
.+..+.+|+.|++++|.++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.++...+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4556778888888888887 3443 3343 4888888888888743 56777888888888888887433333477788
Q ss_pred CcEEEcccCcCccCCCc--cCCCCCCCceEEcccCcccccCCCC----CC-CCCCCeEecccCcccc
Q 046860 150 LVVLSLFFNHLNGSVPP--SLGNLTNLQQLILFSNNLSGSIPPS----LE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 150 L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~----~~-~~~L~~L~l~~n~l~~ 209 (234)
|++|++++|.+. .+|. .+..+++|++|++++|.++ ..|.. +. +++|+.|+++.|.+..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888876 4554 6677778888888888877 34442 44 7778888877776543
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=9e-19 Score=149.06 Aligned_cols=36 Identities=36% Similarity=0.428 Sum_probs=17.6
Q ss_pred EEEEEcCCCCccc----ccCCCcCCCCCCCCEEEccCCccc
Q 046860 53 VIKISLPKIGLKG----TLHDFSFSSFPHLAYLDLSYNELF 89 (234)
Q Consensus 53 ~~~L~l~~~~l~~----~~~~~~~~~l~~L~~L~l~~n~l~ 89 (234)
++.|++++|.++. .+ +..+..+++|++|++++|.++
T Consensus 87 L~~L~L~~n~i~~~~~~~l-~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVL-SSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp CCEEECTTSCCBGGGHHHH-HHHTTSCTTCCEEECCSSBCH
T ss_pred eeEEEccCCCCCHHHHHHH-HHHHccCCceeEEECCCCcCc
Confidence 5555555555542 22 334445555555555555543
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=3.4e-15 Score=110.55 Aligned_cols=107 Identities=24% Similarity=0.250 Sum_probs=72.9
Q ss_pred CCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcc
Q 046860 101 NLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILF 180 (234)
Q Consensus 101 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 180 (234)
..+.+++++|.++ .+|..+ .++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3466777777777 455544 2667777777777776556667777777777777777775555556677777777777
Q ss_pred cCcccccCCCCCC-CCCCCeEecccCccccc
Q 046860 181 SNNLSGSIPPSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 181 ~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
+|.+++..+..+. +++|+.|++++|.++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7777755555555 67777777777776653
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=4.2e-16 Score=116.06 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCC-CCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEE
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSF-PHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELL 129 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 129 (234)
..++.|++++|.++. + +. +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~-i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-I-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCS-C-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCch-h-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 346777777776653 2 22 3333 3677777777766643 456666777777777777763322333666777777
Q ss_pred EcccCcCCCCCCc--cccCCCCCcEEEcccCcCccCCCcc----CCCCCCCceEEcccCccc
Q 046860 130 HIDTNQLDGSIPP--ELGQLSSLVVLSLFFNHLNGSVPPS----LGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 130 ~l~~n~~~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~ 185 (234)
++++|.+. .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|+++.|...
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777665 4454 5666677777777777766 34443 566677777777666554
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=1.8e-19 Score=136.98 Aligned_cols=112 Identities=27% Similarity=0.328 Sum_probs=50.7
Q ss_pred cCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 046860 71 SFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSL 150 (234)
Q Consensus 71 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L 150 (234)
.+..+++|+.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34445555555555555442 33 4444455555555555554 334333334445555555554442 22 34444445
Q ss_pred cEEEcccCcCccCCC-ccCCCCCCCceEEcccCccccc
Q 046860 151 VVLSLFFNHLNGSVP-PSLGNLTNLQQLILFSNNLSGS 187 (234)
Q Consensus 151 ~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~ 187 (234)
++|++++|.+++..+ ..+..+++|++|++++|.+++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555544442111 1334444444444444444433
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=7.2e-15 Score=109.24 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=75.5
Q ss_pred cEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccC
Q 046860 103 TTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSN 182 (234)
Q Consensus 103 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 182 (234)
+.+++++++++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56788888776 5666543 67788888888887666667777788888888888877544445677778888888888
Q ss_pred cccccCCCCCC-CCCCCeEecccCcccc
Q 046860 183 NLSGSIPPSLE-YPMLTTLNLDFNHFTS 209 (234)
Q Consensus 183 ~l~~~~~~~~~-~~~L~~L~l~~n~l~~ 209 (234)
.+++..+..+. +++|+.|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 77755555455 7777888888777765
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=6.5e-15 Score=128.57 Aligned_cols=151 Identities=23% Similarity=0.256 Sum_probs=119.6
Q ss_pred CcCCCCCCCCEEE-ccCCccccCCCc------cCC--CCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCC
Q 046860 70 FSFSSFPHLAYLD-LSYNELFGTIPP------QIS--NLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSI 140 (234)
Q Consensus 70 ~~~~~l~~L~~L~-l~~n~l~~~~~~------~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 140 (234)
..+..+++|+.|+ ++.|.+.. ++. .+. ....|+.|++++|.++ .+|. +..+++|++|++++|.++ .+
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~l 478 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-AL 478 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CC
T ss_pred HHHHHHHhcccCcchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-cc
Confidence 3455677777777 44443220 000 000 0125899999999999 4676 899999999999999999 88
Q ss_pred CccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccC-CCCCC-CCCCCeEecccCcccccCCcc---C
Q 046860 141 PPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSI-PPSLE-YPMLTTLNLDFNHFTSYLPHN---V 215 (234)
Q Consensus 141 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~-~~~L~~L~l~~n~l~~~~~~~---~ 215 (234)
|..++.+++|++|++++|.+++ +| .+..+++|+.|+|++|.+++.. |..+. +++|+.|++++|.+++.+|.. +
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence 9999999999999999999995 67 7999999999999999999776 77777 999999999999999865532 2
Q ss_pred CCCCCcCEEec
Q 046860 216 CRGSMCCRFSL 226 (234)
Q Consensus 216 ~~~~~L~~L~l 226 (234)
..+++|+.|++
T Consensus 557 ~~lp~L~~L~l 567 (567)
T 1dce_A 557 EMLPSVSSILT 567 (567)
T ss_dssp HHCTTCSEEEC
T ss_pred HHCcccCccCC
Confidence 35899999875
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=3.5e-14 Score=105.10 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=76.3
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
+.|+++++.++. + +..+ .+.|+.|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~~-i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-V-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-c-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777787764 4 3333 37788888888888866677788888888888888888755455567778888888888
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCcc
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLNG 162 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 162 (234)
|.+++..+..|..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88775444457777788888888877763
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=5e-18 Score=128.91 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=123.7
Q ss_pred CCCCCCEEEccCCccccCCCc------cCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCC
Q 046860 74 SFPHLAYLDLSYNELFGTIPP------QISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQL 147 (234)
Q Consensus 74 ~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 147 (234)
....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555666666666655554 78889999999999999984 66 7888999999999999999 778877778
Q ss_pred CCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCC-CCCC-CCCCCeEecccCcccccCCcc----------C
Q 046860 148 SSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIP-PSLE-YPMLTTLNLDFNHFTSYLPHN----------V 215 (234)
Q Consensus 148 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~----------~ 215 (234)
++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+. +++|++|++++|.+.+.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 999999999999985 45 57788999999999999985432 2344 899999999999998765542 6
Q ss_pred CCCCCcCEEeccCCccCC
Q 046860 216 CRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 216 ~~~~~L~~L~l~~N~l~~ 233 (234)
..+++|+.|| +|.+++
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 7899999987 777664
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=3.9e-14 Score=115.62 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCEEEEEcCCCCccc-------------------ccCCCcCCC--------CCCCCEEEccCCccccCCCccCCCCCCCc
Q 046860 51 GRVIKISLPKIGLKG-------------------TLHDFSFSS--------FPHLAYLDLSYNELFGTIPPQISNLTNLT 103 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~-------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 103 (234)
.+++.|||++|.+.. .++...|.+ +++|+.+++.. .++...+.+|.+|++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 457777777777650 233455666 78888888887 67655566788888888
Q ss_pred EEEeecccccccCCccCcCCCCCcEEE
Q 046860 104 TLYFGGDQFSGNIPPEVGLMSHLELLH 130 (234)
Q Consensus 104 ~L~l~~n~l~~~~p~~~~~l~~L~~L~ 130 (234)
.++++.|.+....+..|..+.++.++.
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred eEEcCCCCccccchhhhcCCCceEEec
Confidence 888888876533344444444444333
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=7.7e-14 Score=103.64 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=76.0
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 54 IKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
+.++++++.++ .+ |..+ .++|+.|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-cc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 57788888875 34 3333 27788888888888876677788888888888888888744444467778888888888
Q ss_pred CcCCCCCCccccCCCCCcEEEcccCcCc
Q 046860 134 NQLDGSIPPELGQLSSLVVLSLFFNHLN 161 (234)
Q Consensus 134 n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 161 (234)
|.++...+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8887443344777778888888887776
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=4.4e-13 Score=109.34 Aligned_cols=176 Identities=15% Similarity=0.082 Sum_probs=130.0
Q ss_pred CEEEEEcCCCCcccccCCCcCCC-CCCCCEEEccCCccc--------------------cCCCccCCC--------CCCC
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSS-FPHLAYLDLSYNELF--------------------GTIPPQISN--------LTNL 102 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~-l~~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L 102 (234)
+++.|.++++--...+ ..+.. +++|+.||+++|.+. ...+.+|.+ +++|
T Consensus 26 ~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred ceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 4677777754211111 12223 788999999999887 223346677 9999
Q ss_pred cEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCcccc-------------------------------------
Q 046860 103 TTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELG------------------------------------- 145 (234)
Q Consensus 103 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~------------------------------------- 145 (234)
+.|++.. .++...+..|.++++|+++++.+|.+....+..|.
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 9999999 88856666899999999999999975311111111
Q ss_pred -----------------------------------------CCCCCcEEEcccCcCccCCCccCCCCCCCceEEcccCcc
Q 046860 146 -----------------------------------------QLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNL 184 (234)
Q Consensus 146 -----------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 184 (234)
.+++|+.+++.+|.++......|.++.+|+.+.+.+| +
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence 1578999999998888665667899999999999888 7
Q ss_pred cccCCCCCC-CCCCC-eEecccCcccccCCccCCCCCCcCEEeccCCccC
Q 046860 185 SGSIPPSLE-YPMLT-TLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 185 ~~~~~~~~~-~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~ 232 (234)
+...+..+. +++|+ .+.+.. .++...+.+|..|++|+.++++.|.++
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 756666666 88899 999987 777766788899999999999888765
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.45 E-value=3.6e-13 Score=110.55 Aligned_cols=104 Identities=20% Similarity=0.124 Sum_probs=78.5
Q ss_pred EEEeecc-cccccCCccCcCCCCCcEEEccc-CcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEccc
Q 046860 104 TLYFGGD-QFSGNIPPEVGLMSHLELLHIDT-NQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFS 181 (234)
Q Consensus 104 ~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 181 (234)
.++++++ +++ .+|. +..+++|++|++++ |.+.+..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 777 5677 77788888888885 888765556788888888888888888877777778888888888888
Q ss_pred CcccccCCCCCCCCCCCeEecccCcccc
Q 046860 182 NNLSGSIPPSLEYPMLTTLNLDFNHFTS 209 (234)
Q Consensus 182 n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 209 (234)
|.+++..+..+....|+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccC
Confidence 8888655555553338888888887764
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=1.5e-15 Score=126.06 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=79.1
Q ss_pred CEEEEEcCCCCcccccC---CCcCC-CCCCCCEEEccCCccccCCCccC-CCCCCCcEEEeecccccccCCccC-----c
Q 046860 52 RVIKISLPKIGLKGTLH---DFSFS-SFPHLAYLDLSYNELFGTIPPQI-SNLTNLTTLYFGGDQFSGNIPPEV-----G 121 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~---~~~~~-~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~-----~ 121 (234)
.++.|++++|.++.... ...+. ...+|+.|++++|.++......+ ..+++|++|++++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 46666666666653210 11111 22466666666666542211111 123456666666666653222222 2
Q ss_pred CCCCCcEEEcccCcCCC----CCCccccCCCCCcEEEcccCcCccC----CCccCCCCCCCceEEcccCcccccCC----
Q 046860 122 LMSHLELLHIDTNQLDG----SIPPELGQLSSLVVLSLFFNHLNGS----VPPSLGNLTNLQQLILFSNNLSGSIP---- 189 (234)
Q Consensus 122 ~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~---- 189 (234)
..++|++|++++|.++. .++..+...++|++|++++|.+... ++..+...++|++|+|++|.+++...
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 34556666666666542 1222334556666666666666531 23344455566666666666653211
Q ss_pred CCCC-CCCCCeEecccCccccc
Q 046860 190 PSLE-YPMLTTLNLDFNHFTSY 210 (234)
Q Consensus 190 ~~~~-~~~L~~L~l~~n~l~~~ 210 (234)
..+. .++|++|++++|.|++.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHhCCCCCEEeccCCCCCHH
Confidence 1112 45666666666666543
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=2.8e-12 Score=105.21 Aligned_cols=102 Identities=20% Similarity=0.131 Sum_probs=85.0
Q ss_pred EcCCC-CcccccCCCcCCCCCCCCEEEccC-CccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccC
Q 046860 57 SLPKI-GLKGTLHDFSFSSFPHLAYLDLSY-NELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTN 134 (234)
Q Consensus 57 ~l~~~-~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 134 (234)
+++++ .+++ + |. +..+.+|+.|+|++ |.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus 14 ~~~~~n~l~~-i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 14 RCTRDGALDS-L-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp ECCSSCCCTT-T-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EcCCCCCCCc-c-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 44555 6664 5 55 88999999999996 9998777788999999999999999999888888999999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEcccCcCcc
Q 046860 135 QLDGSIPPELGQLSSLVVLSLFFNHLNG 162 (234)
Q Consensus 135 ~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 162 (234)
.+++..+..|..++ |+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99954444455554 9999999999874
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.32 E-value=2.7e-14 Score=125.01 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=38.2
Q ss_pred EEEEEcCCCC-ccc-ccCCCcCCCCCCCCEEEccCCccccC----CCccCCCCCCCcEEEeeccccc----ccCCccCcC
Q 046860 53 VIKISLPKIG-LKG-TLHDFSFSSFPHLAYLDLSYNELFGT----IPPQISNLTNLTTLYFGGDQFS----GNIPPEVGL 122 (234)
Q Consensus 53 ~~~L~l~~~~-l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~ 122 (234)
++.|+++++. ++. .+ ...+.++++|++|++++|.+++. ++..+..+++|++|++++|.++ ..++..+..
T Consensus 140 L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGL-LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp CCEEEEESCEEEEHHHH-HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHH-HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 6666666654 111 11 11223455666666666655432 1112234455555555555553 122222334
Q ss_pred CCCCcEEEcccCcCC
Q 046860 123 MSHLELLHIDTNQLD 137 (234)
Q Consensus 123 l~~L~~L~l~~n~~~ 137 (234)
+++|++|++.+|.+.
T Consensus 219 ~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 219 CRSLVSVKVGDFEIL 233 (592)
T ss_dssp CTTCCEEECSSCBGG
T ss_pred CCCCcEEeccCccHH
Confidence 455555555555443
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.5e-15 Score=126.14 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=116.2
Q ss_pred CCCCCEEEccCCccccCCCcc----CC-CCCCCcEEEeecccccccCCccC-cCCCCCcEEEcccCcCCCCCCccc----
Q 046860 75 FPHLAYLDLSYNELFGTIPPQ----IS-NLTNLTTLYFGGDQFSGNIPPEV-GLMSHLELLHIDTNQLDGSIPPEL---- 144 (234)
Q Consensus 75 l~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~p~~l---- 144 (234)
++.|+.|++++|.++...... +. ..++|++|++++|.++......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 567899999999986432222 22 33799999999999874322222 345689999999999874333333
Q ss_pred -cCCCCCcEEEcccCcCcc----CCCccCCCCCCCceEEcccCcccccC----CCCCC-CCCCCeEecccCccccc----
Q 046860 145 -GQLSSLVVLSLFFNHLNG----SVPPSLGNLTNLQQLILFSNNLSGSI----PPSLE-YPMLTTLNLDFNHFTSY---- 210 (234)
Q Consensus 145 -~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~-~~~L~~L~l~~n~l~~~---- 210 (234)
...++|++|++++|.++. .++..+..+++|++|+|++|.+++.- +..+. .++|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346889999999999874 24445567889999999999987432 33334 67899999999999864
Q ss_pred CCccCCCCCCcCEEeccCCccCC
Q 046860 211 LPHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 211 ~~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
++..+...+.|++|+|++|.|++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 33344567899999999999875
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.27 E-value=1.5e-13 Score=120.21 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=40.3
Q ss_pred CCEEEEEcCCCCcccc----cCCCcCCCCCCCCEEEccCCcccc----CCCccCCCCCCCcEEEeecccccccCCccCcC
Q 046860 51 GRVIKISLPKIGLKGT----LHDFSFSSFPHLAYLDLSYNELFG----TIPPQISNLTNLTTLYFGGDQFSGNIPPEVGL 122 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~----~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 122 (234)
++++.|++++|.+++. + +.....++.|+.|++++|.+++ .++..+..+++|++|++++|.+.+ ++..+..
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWL-HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHH-HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCEEECccccccCcchhHH-HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 4577777777765433 1 2233445666666666666541 122223455666666666665542 3333333
Q ss_pred CCCCcEEEc
Q 046860 123 MSHLELLHI 131 (234)
Q Consensus 123 l~~L~~L~l 131 (234)
+++|++|++
T Consensus 242 ~~~L~~L~l 250 (592)
T 3ogk_B 242 AANLEEFCG 250 (592)
T ss_dssp CTTCCEEEE
T ss_pred hhHHHhhcc
Confidence 344444443
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=3.5e-10 Score=94.64 Aligned_cols=172 Identities=15% Similarity=0.048 Sum_probs=91.5
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccC----------------------CCccCCCCCCCcEEEeec
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGT----------------------IPPQISNLTNLTTLYFGG 109 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~ 109 (234)
.++.+.+.. .++. +....|.++.+|+.+++.+|.++.. ...+|.++++|+.+.+..
T Consensus 158 ~L~~i~lp~-~l~~-I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQ-LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCE-ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccE-ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 355555554 3332 2255566666666666666555422 223344444444444443
Q ss_pred ccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCc-----cCCCccCCCCCCCceEEcccCcc
Q 046860 110 DQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLN-----GSVPPSLGNLTNLQQLILFSNNL 184 (234)
Q Consensus 110 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l 184 (234)
+ ++..-...|.+ .+|+.+.+. +.++..-...|..+++|+.+.+.+|.+. ...+..|..+++|+.+.+.+ .+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 2 22122222333 344445442 2233233445666777777777666543 23345666777777777763 35
Q ss_pred cccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCcc
Q 046860 185 SGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 185 ~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l 231 (234)
+......+. +++|+.+.+..+ ++.....+|..+ +|+.+++..|.+
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 544444444 677777777443 544445566667 777777777654
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.19 E-value=6.6e-10 Score=92.97 Aligned_cols=171 Identities=12% Similarity=0.129 Sum_probs=110.2
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEc
Q 046860 52 RVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHI 131 (234)
Q Consensus 52 ~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 131 (234)
+++.+.+..+ ++ .+...+|.+. .|+.+.+.. .++.....+|..|++|+.+++..|.++ .++.......+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEe
Confidence 4778888766 44 3436677774 799999986 566566778999999999999999887 44443333577777777
Q ss_pred ccCcCCCCCCccccCCCCCcEEEcccC---------------------cCccCCCccCCCCCCCceEEcccCccc-----
Q 046860 132 DTNQLDGSIPPELGQLSSLVVLSLFFN---------------------HLNGSVPPSLGNLTNLQQLILFSNNLS----- 185 (234)
Q Consensus 132 ~~n~~~~~~p~~l~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~~~~L~~L~L~~n~l~----- 185 (234)
..+ +...-...|..+++|+.+.+..+ .++.....+|.++++|+.+.+.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 644 44344455666666776666543 122223445666677777776666543
Q ss_pred ccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCC
Q 046860 186 GSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASL 229 (234)
Q Consensus 186 ~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N 229 (234)
...+..+. +++|+.+.+. +.++.....+|..|.+|+.+.|..|
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 23334444 6677777776 3455545556677777777777544
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.19 E-value=4.1e-14 Score=123.88 Aligned_cols=179 Identities=14% Similarity=0.033 Sum_probs=99.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCCEEEccCCccccC-CCccCCCCCCCcEEEe----------------------
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFSSFPHLAYLDLSYNELFGT-IPPQISNLTNLTTLYF---------------------- 107 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l---------------------- 107 (234)
.+++.|++++|.+++......+..+++|+.|++++| +... ++.....+++|++|++
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 468888888888764331233456777777777766 2211 1111112444555544
Q ss_pred ------------ecccccccCCccCc-CCCCCcEEEcc--c----CcCCCCCC------ccccCCCCCcEEEcccCcCcc
Q 046860 108 ------------GGDQFSGNIPPEVG-LMSHLELLHID--T----NQLDGSIP------PELGQLSSLVVLSLFFNHLNG 162 (234)
Q Consensus 108 ------------~~n~l~~~~p~~~~-~l~~L~~L~l~--~----n~~~~~~p------~~l~~l~~L~~L~l~~n~l~~ 162 (234)
..+.+++..+..+. .+++|++|++. + +.++ ..| ..+..+++|+.|++++ .+++
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 44444322222221 35566666666 2 2333 111 1134456666666655 3443
Q ss_pred CCCccCCC-CCCCceEEcccCcccccCCCCC-C-CCCCCeEecccCcccccCCc-cCCCCCCcCEEeccCCccC
Q 046860 163 SVPPSLGN-LTNLQQLILFSNNLSGSIPPSL-E-YPMLTTLNLDFNHFTSYLPH-NVCRGSMCCRFSLASLVFL 232 (234)
Q Consensus 163 ~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~-~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~N~l~ 232 (234)
..+..+.. +++|+.|++++|.+++.....+ . +++|+.|++++|.+++..+. .+..+++|+.|++++|+++
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 32333333 6778888888887764433333 2 78888888888888654333 3346788888998888775
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=8.3e-13 Score=115.54 Aligned_cols=107 Identities=15% Similarity=0.056 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCC-CCCCCCEEEccCC-ccccC-CCccCCCCCCCcEEEeecccccccCCcc----CcCC
Q 046860 51 GRVIKISLPKIGLKGTLHDFSFS-SFPHLAYLDLSYN-ELFGT-IPPQISNLTNLTTLYFGGDQFSGNIPPE----VGLM 123 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~----~~~l 123 (234)
.+++.|+++++.+++.. ...+. .+++|+.|++++| .++.. ++..+..+++|++|++++|.+++..+.. ...+
T Consensus 105 ~~L~~L~L~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDC-LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHH-HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHH-HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 35666777766665443 23332 4566777777666 33311 2222335667777777776655322222 2245
Q ss_pred CCCcEEEcccCc--CCC-CCCccccCCCCCcEEEcccC
Q 046860 124 SHLELLHIDTNQ--LDG-SIPPELGQLSSLVVLSLFFN 158 (234)
Q Consensus 124 ~~L~~L~l~~n~--~~~-~~p~~l~~l~~L~~L~l~~n 158 (234)
++|++|++++|. +.. .++..+..+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 567777776665 110 01111223466666666665
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=3.2e-12 Score=105.52 Aligned_cols=179 Identities=17% Similarity=0.164 Sum_probs=114.8
Q ss_pred CCEEEEEcCCCCccc--------ccCCCcCCCCCCCCEEEccCCccc---------cCCCccCCCCCCCcEEEeeccccc
Q 046860 51 GRVIKISLPKIGLKG--------TLHDFSFSSFPHLAYLDLSYNELF---------GTIPPQISNLTNLTTLYFGGDQFS 113 (234)
Q Consensus 51 ~~~~~L~l~~~~l~~--------~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~ 113 (234)
.+|+.|.+......+ .+ ..+..++++|+.|.+...... +.+...+..+|+|+.|.++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L-~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGI-VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHH-HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHH-HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 457788877665432 11 223456788999988654321 112233456789999999887422
Q ss_pred ccCCccCcCCCCCcEEEcccCcCCCCCCcccc--CCCCCcEEEccc--CcCccC-----CCccC--CCCCCCceEEcccC
Q 046860 114 GNIPPEVGLMSHLELLHIDTNQLDGSIPPELG--QLSSLVVLSLFF--NHLNGS-----VPPSL--GNLTNLQQLILFSN 182 (234)
Q Consensus 114 ~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~~~~L~~L~L~~n 182 (234)
.++. + .+++|++|++..+.+.......+. .+++|+.|+|+. |...+. +...+ ..+++|++|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2333 3 378999999998877633222333 688999999863 211111 11222 24789999999998
Q ss_pred cccccCCCCC----CCCCCCeEecccCcccccC----CccCCCCCCcCEEeccCCccCC
Q 046860 183 NLSGSIPPSL----EYPMLTTLNLDFNHFTSYL----PHNVCRGSMCCRFSLASLVFLD 233 (234)
Q Consensus 183 ~l~~~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~N~l~~ 233 (234)
.+.+..+..+ .+++|+.|+++.|.+.+.. +..+..+++|+.|+|++|.|++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 8764322111 2788999999999987742 3333567899999999998875
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=3.3e-10 Score=93.44 Aligned_cols=174 Identities=13% Similarity=0.155 Sum_probs=114.2
Q ss_pred CCEEEEEcCCCCcc---------cccCCCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCc
Q 046860 51 GRVIKISLPKIGLK---------GTLHDFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVG 121 (234)
Q Consensus 51 ~~~~~L~l~~~~l~---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 121 (234)
++++.|.+.+.... +.+ ...+..+++|+.|.++++.-. .++. + .+++|++|.+..+.+.......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 46888888765331 112 334567899999999987422 2332 3 388999999999988643323332
Q ss_pred --CCCCCcEEEccc--CcCCCC-----CCccc--cCCCCCcEEEcccCcCccCCCccC---CCCCCCceEEcccCccccc
Q 046860 122 --LMSHLELLHIDT--NQLDGS-----IPPEL--GQLSSLVVLSLFFNHLNGSVPPSL---GNLTNLQQLILFSNNLSGS 187 (234)
Q Consensus 122 --~l~~L~~L~l~~--n~~~~~-----~p~~l--~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~ 187 (234)
.+++|++|++.. +...+. +...+ ..+++|++|++.+|.+....+..+ ..+++|++|+|+.|.+.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 689999999853 221111 11222 247899999999998874332222 2578999999999998753
Q ss_pred ----CCCCCC-CCCCCeEecccCcccccCCccCCC-CCCcCEEeccCCc
Q 046860 188 ----IPPSLE-YPMLTTLNLDFNHFTSYLPHNVCR-GSMCCRFSLASLV 230 (234)
Q Consensus 188 ----~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~N~ 230 (234)
++..+. +++|+.|++++|.+++.....+.. + ...++++.++
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 233333 789999999999987654333332 2 3557888776
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1e-09 Score=82.10 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=42.8
Q ss_pred CCCCCCCcEEEeecc-ccccc----CCccCcCCCCCcEEEcccCcCCCC----CCccccCCCCCcEEEcccCcCccC---
Q 046860 96 ISNLTNLTTLYFGGD-QFSGN----IPPEVGLMSHLELLHIDTNQLDGS----IPPELGQLSSLVVLSLFFNHLNGS--- 163 (234)
Q Consensus 96 ~~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~--- 163 (234)
+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445566666666666 55421 222334455566666666655421 122233334555555555555431
Q ss_pred -CCccCCCCCCCceEEc--ccCccc
Q 046860 164 -VPPSLGNLTNLQQLIL--FSNNLS 185 (234)
Q Consensus 164 -~~~~~~~~~~L~~L~L--~~n~l~ 185 (234)
+...+...+.|++|+| ++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 2233334444555555 444443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=3.7e-09 Score=78.98 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=74.2
Q ss_pred CcCCCCCCCCEEEccCC-cccc----CCCccCCCCCCCcEEEeeccccccc----CCccCcCCCCCcEEEcccCcCCCC-
Q 046860 70 FSFSSFPHLAYLDLSYN-ELFG----TIPPQISNLTNLTTLYFGGDQFSGN----IPPEVGLMSHLELLHIDTNQLDGS- 139 (234)
Q Consensus 70 ~~~~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~- 139 (234)
..+...+.|++|++++| .+.. .+...+...++|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555677777777777 6642 1233455667778888888877632 223344556788888888877632
Q ss_pred ---CCccccCCCCCcEEEc--ccCcCccC----CCccCCCCCCCceEEcccCccc
Q 046860 140 ---IPPELGQLSSLVVLSL--FFNHLNGS----VPPSLGNLTNLQQLILFSNNLS 185 (234)
Q Consensus 140 ---~p~~l~~l~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~ 185 (234)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677888888 77877642 2334455577888888877764
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=2.2e-07 Score=73.19 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=35.7
Q ss_pred CCCCCcEEEcccCcCCC--CCCccccCCCCCcEEEcccCcCccCCCccCCCCC--CCceEEcccCcccccCC
Q 046860 122 LMSHLELLHIDTNQLDG--SIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLT--NLQQLILFSNNLSGSIP 189 (234)
Q Consensus 122 ~l~~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~ 189 (234)
.+++|++|++++|.+++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|.+|.+.+..|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45666666666666664 2233444566666666666666532 1122222 56666666666654443
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=3e-07 Score=72.35 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=62.2
Q ss_pred CCCCCCcEEEeecccccc--cCCccCcCCCCCcEEEcccCcCCCCCCccccCCC--CCcEEEcccCcCccCCCc------
Q 046860 97 SNLTNLTTLYFGGDQFSG--NIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLS--SLVVLSLFFNHLNGSVPP------ 166 (234)
Q Consensus 97 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~--~L~~L~l~~n~l~~~~~~------ 166 (234)
..+++|+.|+|++|.+++ .+|..+..+++|++|++++|.+.+. ..+..+. +|++|++.+|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999985 3445566899999999999999853 2333334 999999999999876652
Q ss_pred -cCCCCCCCceEE
Q 046860 167 -SLGNLTNLQQLI 178 (234)
Q Consensus 167 -~~~~~~~L~~L~ 178 (234)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356778888775
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.14 E-value=4.5e-05 Score=63.32 Aligned_cols=145 Identities=10% Similarity=-0.018 Sum_probs=69.5
Q ss_pred CCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEc
Q 046860 76 PHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSL 155 (234)
Q Consensus 76 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 155 (234)
..|+.+.+... ++.....++..+..|+.+.+..+... .....+..+..++.+......+. ...|..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence 45555555432 22122344555666666666555433 33344555555555555443322 123445555555555
Q ss_pred ccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccC
Q 046860 156 FFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLAS 228 (234)
Q Consensus 156 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 228 (234)
..+ ++.....+|.++.+|+.+.+..+ ++..-...+. +++|+.+.+..+ ++.....+|..|.+|+.+++..
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 443 33233345555555665555433 3323333333 555555555444 4333334555555566555543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=5.6e-07 Score=66.19 Aligned_cols=34 Identities=6% Similarity=0.046 Sum_probs=16.3
Q ss_pred CCCEEEccCCccccCCCccCCCCCCCcEEEeecc
Q 046860 77 HLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGD 110 (234)
Q Consensus 77 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (234)
.|+.||+++|.++..--..+..+++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544222223344555555555555
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.12 E-value=7.8e-05 Score=61.85 Aligned_cols=145 Identities=13% Similarity=0.039 Sum_probs=70.4
Q ss_pred CcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCC
Q 046860 70 FSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSS 149 (234)
Q Consensus 70 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~ 149 (234)
..+..+..++.+.+..+... ....+|..+..++.+......+. ...+..+.+|+.+.+..+ ++..-...|..+.+
T Consensus 247 ~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp STTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCC
Confidence 34455555555555544332 33445555556665555444322 123455556666655443 33233344555666
Q ss_pred CcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCE
Q 046860 150 LVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCR 223 (234)
Q Consensus 150 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 223 (234)
|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++......+. +++|+.+.+..+- .. +..+|..+++|+.
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~~-~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-EQ-YRYDFEDTTKFKW 392 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-GG-GGGGBCTTCEEEE
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-EE-hhheecCCCCCcE
Confidence 666665433 44333445556666666666544 4433333444 5566666654431 11 2234555555544
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=4.8e-07 Score=66.54 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=36.7
Q ss_pred CCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCc-CccCCCccCCCC----CCCceEEcccCc-ccccCCCCCC-CCC
Q 046860 124 SHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNH-LNGSVPPSLGNL----TNLQQLILFSNN-LSGSIPPSLE-YPM 196 (234)
Q Consensus 124 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~-~~~ 196 (234)
..|++|+++++.++..--..+..+++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++.--..+. +++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 346666666665553333334455556666665553 433222222222 245555555542 4321111112 455
Q ss_pred CCeEecccC
Q 046860 197 LTTLNLDFN 205 (234)
Q Consensus 197 L~~L~l~~n 205 (234)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.06 E-value=0.00012 Score=60.31 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=16.3
Q ss_pred ccCCCCCcEEEcccCcCccCCCccCCCCCCCceEEcc
Q 046860 144 LGQLSSLVVLSLFFNHLNGSVPPSLGNLTNLQQLILF 180 (234)
Q Consensus 144 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 180 (234)
|..+.+|+.+.+.++.++.....+|.++.+|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 4444444444444444432333344444444444443
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=0.00013 Score=60.06 Aligned_cols=152 Identities=11% Similarity=0.011 Sum_probs=89.8
Q ss_pred CCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcE
Q 046860 73 SSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVV 152 (234)
Q Consensus 73 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 152 (234)
.....+..+.+....-. ....++..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...|..+..|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 33444555544433221 33445566677777776554 22233445666777777777654 33233445667777777
Q ss_pred EEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCC
Q 046860 153 LSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASL 229 (234)
Q Consensus 153 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N 229 (234)
+.+..+ +.......|..+.+|+.+.+.++.++......+. +.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777554 4434445677777777777777777655455555 677777777543 44444456777777777766543
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=2.8e-05 Score=64.56 Aligned_cols=131 Identities=8% Similarity=0.030 Sum_probs=72.3
Q ss_pred ccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCccCCCccCCCCCC
Q 046860 94 PQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLNGSVPPSLGNLTN 173 (234)
Q Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 173 (234)
.+|..+..|+.+.+..+... .-...|..+.+|+.+.+.. .++..-...|..+.+|+.+.+..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35666777777777655443 3344566677777777753 333233445667777777777654 44344556777777
Q ss_pred CceEEcccCcccccCCCCCC-CCCCCeEecccCcccccCCccCCCCCCcCEEeccCCcc
Q 046860 174 LQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFTSYLPHNVCRGSMCCRFSLASLVF 231 (234)
Q Consensus 174 L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l 231 (234)
|+.+.+..+ ++..-...+. +++|+.+.+.++.... ..+..+..|+.+.+..|.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 777777544 4433334444 6777777777665322 2455666777777666543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.89 E-value=9.5e-05 Score=61.35 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=92.4
Q ss_pred CCcCCCCCCCCEEEccCCccccCCCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEcccCcCCCCCCccccCCC
Q 046860 69 DFSFSSFPHLAYLDLSYNELFGTIPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLS 148 (234)
Q Consensus 69 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 148 (234)
...|..+..|+.+.+..+... ....+|.+++.|+.+.+.. .++......|.++.+|+.+.+..+ ++..-...|..+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 457888889999998765443 4566889999999999964 455344567889999999999765 5534456799999
Q ss_pred CCcEEEcccCcCccCCCccCCCCCCCceEEcccCcccccCCCCCCCCCCCeEecccCcc
Q 046860 149 SLVVLSLFFNHLNGSVPPSLGNLTNLQQLILFSNNLSGSIPPSLEYPMLTTLNLDFNHF 207 (234)
Q Consensus 149 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l 207 (234)
+|+.+.+..+ ++.....+|.++.+|+.+.+.++.... ........|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 9999999765 664556689999999999998886542 1222367788887765543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.0006 Score=47.41 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=33.2
Q ss_pred EEEcccCcCc-cCCCccCCCCCCCceEEcccCcccccCCCCCC-CCCCCeEecccCccc
Q 046860 152 VLSLFFNHLN-GSVPPSLGNLTNLQQLILFSNNLSGSIPPSLE-YPMLTTLNLDFNHFT 208 (234)
Q Consensus 152 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~ 208 (234)
.++.+++.++ ..+|..+. .+|++|+|++|.|+...+..+. +++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666676665 23443322 3567777777777755444444 667777777777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.18 E-value=2.1e-05 Score=58.82 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=48.9
Q ss_pred CCCCCCcEEEeecc-cccc----cCCccCcCCCCCcEEEcccCcCCCC----CCccccCCCCCcEEEcccCcCccC----
Q 046860 97 SNLTNLTTLYFGGD-QFSG----NIPPEVGLMSHLELLHIDTNQLDGS----IPPELGQLSSLVVLSLFFNHLNGS---- 163 (234)
Q Consensus 97 ~~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~---- 163 (234)
..-+.|+.|+++++ ++.. .+.+.+..-+.|+.|++++|.+... +...+..-++|+.|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34567777777764 5542 1233445556677777777776632 222333446677777777776532
Q ss_pred CCccCCCCCCCceEEcccC
Q 046860 164 VPPSLGNLTNLQQLILFSN 182 (234)
Q Consensus 164 ~~~~~~~~~~L~~L~L~~n 182 (234)
+-+.+..-..|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2334445556666666544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=4.4e-05 Score=57.07 Aligned_cols=113 Identities=9% Similarity=0.067 Sum_probs=69.2
Q ss_pred CCCCCCCCEEEccCC-cccc----CCCccCCCCCCCcEEEeeccccccc----CCccCcCCCCCcEEEcccCcCCCC---
Q 046860 72 FSSFPHLAYLDLSYN-ELFG----TIPPQISNLTNLTTLYFGGDQFSGN----IPPEVGLMSHLELLHIDTNQLDGS--- 139 (234)
Q Consensus 72 ~~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~--- 139 (234)
+.+-+.|+.|+++++ .+.. .+..++..-..|+.|+|++|++.+. +...+..-+.|++|+++.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445567888888875 5531 1334455667888888888888743 222334457788888888887742
Q ss_pred -CCccccCCCCCcEEEcccCcC---cc----CCCccCCCCCCCceEEcccCcc
Q 046860 140 -IPPELGQLSSLVVLSLFFNHL---NG----SVPPSLGNLTNLQQLILFSNNL 184 (234)
Q Consensus 140 -~p~~l~~l~~L~~L~l~~n~l---~~----~~~~~~~~~~~L~~L~L~~n~l 184 (234)
+...+..-++|++|+|++|.. .. .+.+.+..-+.|..|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 223344556788888876532 21 1223444556777777766654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0026 Score=44.10 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=31.6
Q ss_pred EEEeeccccc-ccCCccCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEcccCcCc
Q 046860 104 TLYFGGDQFS-GNIPPEVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFFNHLN 161 (234)
Q Consensus 104 ~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 161 (234)
.++.+++.++ ..+|..+ -++|++|++++|.|+..-+..|..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666654 2344322 234666777777766433344566666667776666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.62 E-value=8.4 Score=24.80 Aligned_cols=41 Identities=10% Similarity=-0.092 Sum_probs=19.2
Q ss_pred CCccCCCCCCCcEEEeecccccccCCccCcCCCCCcEEEccc
Q 046860 92 IPPQISNLTNLTTLYFGGDQFSGNIPPEVGLMSHLELLHIDT 133 (234)
Q Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 133 (234)
-..+|.+|..|+.+.+..+- +..-...|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 33455555555555555432 212233455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.73 E-value=40 Score=21.46 Aligned_cols=38 Identities=11% Similarity=-0.045 Sum_probs=17.2
Q ss_pred cCcCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccc
Q 046860 119 EVGLMSHLELLHIDTNQLDGSIPPELGQLSSLVVLSLFF 157 (234)
Q Consensus 119 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 157 (234)
.|.++.+|+.+.+-.+ ++..-...|..+.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445555555555433 2212333445555555555443
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=21.33 E-value=33 Score=14.93 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=7.2
Q ss_pred CCCceeeeEE
Q 046860 37 ISPCAWSGIS 46 (234)
Q Consensus 37 ~~~c~~~g~~ 46 (234)
..-|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3468999875
Done!