BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046861
(870 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8H738|TRUB_SHEPA tRNA pseudouridine synthase B OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=truB PE=3 SV=1
Length = 315
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 483 EFNFYQPEIPPLQLDGTEDTNDTKTKVYLPDLGKGLGS------VVQTRDGGY----LVA 532
E NF E L LD + T + DLG+ LG + +T+ GY +V+
Sbjct: 156 ELNFISLEGDELTLD-IHCSKGTYIRTITDDLGEMLGCGAHVIMLRRTQVAGYPYDKMVS 214
Query: 533 MNPLDIEVARKETPKLAM-QISKPLVLPSNKSTSGFE---VFQQMAAVGFEELSSQILSL 588
+ L+ VA+ + L + ++ PL+LP + + SGF+ V ++A Q+ +L
Sbjct: 215 LKQLEELVAKADAESLTLSEVLDPLLLPMDTAVSGFKEINVSDELATYLMNGNPVQVANL 274
Query: 589 MPVDELM 595
PVDEL+
Sbjct: 275 -PVDELV 280
>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster
GN=RanBPM PE=1 SV=1
Length = 962
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 300 SNKSRNFTSS-FGRKQSKTSFSVPSPRLASRAEAWTPSQTGASADLQGIDDLNLDEPDPV 358
SN +F++ F ++S SPR+ R TP+ + S QG+D L L P+
Sbjct: 353 SNNGSHFSNDMFPSHNPRSSTQTSSPRVGGRRHHSTPAASSNSPQHQGVDPLRLLYPN-- 410
Query: 359 PSSSTSVKKSEEPEPKKEVAEDQDLDL----PDFEVVDKGVEIQNKVEAA 404
V +SE P P+ D+ L + + V KGV Q+ A+
Sbjct: 411 ------VNESETPLPRCWSPHDKCLSIGLSQNNLRVTYKGVGKQHSDAAS 454
>sp|Q10092|YAOD_SCHPO Uncharacterized protein C11D3.13 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC11D3.13 PE=3 SV=1
Length = 222
Score = 34.3 bits (77), Expect = 4.0, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 555 PLVLPSNKSTSGFEVFQQMAAVGFEELSSQILSLMPVDE 593
P++LP K ++GF + + F E++ Q ++LMP E
Sbjct: 127 PVILPCIKDSTGFSIVKGKTVTAFNEIAEQQMNLMPTFE 165
>sp|B0TQA0|TRUB_SHEHH tRNA pseudouridine synthase B OS=Shewanella halifaxensis (strain
HAW-EB4) GN=truB PE=3 SV=1
Length = 315
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 483 EFNFYQPEIPPLQLDGTEDTNDTKTKVYLPDLGKGLGS------VVQTRDGGY----LVA 532
E NF E L LD + T + DLG+ LG + +T+ GY +V+
Sbjct: 156 ELNFISLEGDELTLD-IHCSKGTYIRTITDDLGEMLGCGAHVIMLRRTQVAGYPYDKMVS 214
Query: 533 MNPLDIEVARKETPKLAM-QISKPLVLPSNKSTSGFE---VFQQMAAVGFEELSSQILSL 588
+ L+ V + + L++ ++ PL+LP + + SGF+ V ++A Q+ +L
Sbjct: 215 LKQLEELVTKADAESLSLSEVLDPLLLPMDTAVSGFKEINVSDELATYLMNGNPVQVANL 274
Query: 589 MPVDELM 595
PVDEL+
Sbjct: 275 -PVDELV 280
>sp|P0DD27|PEPDB_STRPQ Probable dipeptidase B OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=pepDB PE=3 SV=1
Length = 499
Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 279 GFQI---MEKDGGIDIYSQTEGAKSNKSRNFTSSFGR--------KQSKTSFSVPSPRLA 327
GF I + KDG + +Y +TE + + ++NF + K F P P +
Sbjct: 28 GFIIGKDLTKDGSL-LYGRTEDLEPHHNKNFIVRLAKDNPAGEKWKDPSNGFEYPLPEHS 86
Query: 328 SRAEAW---TPSQTGASADLQGIDDLNLDEPDPVPSSSTSVKKSEEPEPKKEVAEDQ--D 382
R A TP++ D G ++ + V +S+ + +P K +AE
Sbjct: 87 YRYSAIPDVTPNK--GVYDEAGFNEFGVSMSATVSTSANDAIQKIDPYVKNGLAESSMAS 144
Query: 383 LDLPDFEVVDKGVEIQNKVEAAQGASEGESVS 414
+ LP + +GV + K+ +GA+EG V+
Sbjct: 145 VILPSVKTAREGVALIAKIVTEKGAAEGNIVT 176
>sp|P0DD26|PEPDB_STRP3 Probable dipeptidase B OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=pepDB PE=3 SV=1
Length = 499
Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 279 GFQI---MEKDGGIDIYSQTEGAKSNKSRNFTSSFGR--------KQSKTSFSVPSPRLA 327
GF I + KDG + +Y +TE + + ++NF + K F P P +
Sbjct: 28 GFIIGKDLTKDGSL-LYGRTEDLEPHHNKNFIVRLAKDNPAGEKWKDPSNGFEYPLPEHS 86
Query: 328 SRAEAW---TPSQTGASADLQGIDDLNLDEPDPVPSSSTSVKKSEEPEPKKEVAEDQ--D 382
R A TP++ D G ++ + V +S+ + +P K +AE
Sbjct: 87 YRYSAIPDVTPNK--GVYDEAGFNEFGVSMSATVSTSANDAIQKIDPYVKNGLAESSMAS 144
Query: 383 LDLPDFEVVDKGVEIQNKVEAAQGASEGESVS 414
+ LP + +GV + K+ +GA+EG V+
Sbjct: 145 VILPSVKTAREGVALIAKIVTEKGAAEGNIVT 176
>sp|A1VG88|PNP_DESVV Polyribonucleotide nucleotidyltransferase OS=Desulfovibrio vulgaris
subsp. vulgaris (strain DP4) GN=pnp PE=3 SV=1
Length = 760
Score = 33.9 bits (76), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 411 ESVSSEVVKEMMHDPLHLSRLTELDSIAQQIKALESMMEEERIIKTESQRLDADEETVTR 470
++V +V++ ++ DP + T L ++ + ALE + ERI++ E +R+D + T R
Sbjct: 274 KAVKEKVMEALVADPAYAEDTTPLRAVGDILSALEKRIVRERIVR-EGRRIDGRDTTTVR 332
Query: 471 EFL 473
L
Sbjct: 333 PIL 335
>sp|Q72ER6|PNP_DESVH Polyribonucleotide nucleotidyltransferase OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=pnp
PE=3 SV=1
Length = 760
Score = 33.9 bits (76), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 411 ESVSSEVVKEMMHDPLHLSRLTELDSIAQQIKALESMMEEERIIKTESQRLDADEETVTR 470
++V +V++ ++ DP + T L ++ + ALE + ERI++ E +R+D + T R
Sbjct: 274 KAVKEKVMEALVADPAYAEDTTPLRAVGDILSALEKRIVRERIVR-EGRRIDGRDTTTVR 332
Query: 471 EFL 473
L
Sbjct: 333 PIL 335
>sp|Q99XS1|PEPDB_STRP1 Probable dipeptidase B OS=Streptococcus pyogenes serotype M1
GN=pepDB PE=3 SV=1
Length = 498
Score = 33.5 bits (75), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 279 GFQI---MEKDGGIDIYSQTEGAKSNKSRNFTSSFGR--------KQSKTSFSVPSPRLA 327
GF I + KDG + +Y +TE + + ++NF + K F P P +
Sbjct: 28 GFIIGKDLTKDGSL-LYGRTEDLEPHHNKNFIVRLAKDNPAGEKWKDLSNGFEYPLPEHS 86
Query: 328 SRAEAW---TPSQTGASADLQGIDDLNLDEPDPVPSSSTSVKKSEEPEPKKEVAEDQ--D 382
R A TP++ D G ++ + V +S+ + +P K +AE
Sbjct: 87 YRYSAIPDVTPNK--GVYDEAGFNEFGVSMSATVSASANDAIQKIDPYVKNGLAESSMTS 144
Query: 383 LDLPDFEVVDKGVEIQNKVEAAQGASEGESVS 414
+ LP + +GV + K+ +GA+EG V+
Sbjct: 145 VILPSVKTAREGVALIAKIVTEKGAAEGNIVT 176
>sp|P43503|XYLC_PSEPU Benzaldehyde dehydrogenase [NAD(+)] OS=Pseudomonas putida GN=xylC
PE=1 SV=1
Length = 487
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 593 ELMGKTAEQIAFEGIASAIIQGRNKEGASSSAARTIAAVKTMATATSTGRKERISTGIWN 652
E+ G A F+ I AI E A+ S A++ T A AT +R++TG+ +
Sbjct: 382 EIFGPVAPITVFDSIEEAI------ELANCSEYGLAASIHTRALATGLDIAKRLNTGMVH 435
Query: 653 VNENPMTAEEILAF 666
+N+ P+ E + F
Sbjct: 436 INDQPINCEPHVPF 449
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 314,377,972
Number of Sequences: 539616
Number of extensions: 13650964
Number of successful extensions: 35529
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 35374
Number of HSP's gapped (non-prelim): 294
length of query: 870
length of database: 191,569,459
effective HSP length: 126
effective length of query: 744
effective length of database: 123,577,843
effective search space: 91941915192
effective search space used: 91941915192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)