Query 046861
Match_columns 870
No_of_seqs 62 out of 64
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.5 2.6E-13 5.5E-18 126.5 12.0 135 136-284 1-138 (143)
2 cd08375 C2_Intersectin C2 doma 72.3 32 0.0007 33.1 9.7 111 143-281 16-136 (136)
3 cd04044 C2A_Tricalbin-like C2 70.2 35 0.00076 31.0 9.0 113 144-280 4-122 (124)
4 cd04050 C2B_Synaptotagmin-like 62.9 39 0.00085 30.5 7.7 101 143-269 1-104 (105)
5 cd04036 C2_cPLA2 C2 domain pre 57.0 76 0.0017 29.2 8.7 113 143-282 1-119 (119)
6 cd00275 C2_PLC_like C2 domain 52.1 1.6E+02 0.0034 27.0 9.8 113 143-280 3-127 (128)
7 PF00168 C2: C2 domain; Inter 50.9 83 0.0018 25.9 7.2 52 144-198 1-56 (85)
8 cd04033 C2_NEDD4_NEDD4L C2 dom 47.6 79 0.0017 29.4 7.3 120 144-280 2-132 (133)
9 TIGR02899 spore_safA spore coa 47.6 3.6 7.8E-05 30.8 -1.3 30 840-869 2-36 (44)
10 cd08373 C2A_Ferlin C2 domain f 47.2 1.1E+02 0.0024 28.4 8.2 113 148-287 2-122 (127)
11 cd04043 C2_Munc13_fungal C2 do 38.5 2.5E+02 0.0054 25.9 9.0 113 142-281 1-121 (126)
12 cd08678 C2_C21orf25-like C2 do 31.6 2.3E+02 0.005 26.5 7.7 104 145-281 2-120 (126)
13 cd08400 C2_Ras_p21A1 C2 domain 30.1 4.6E+02 0.01 24.7 9.5 111 141-281 3-123 (126)
14 cd08682 C2_Rab11-FIP_classI C2 27.7 4E+02 0.0086 24.8 8.5 109 145-278 2-125 (126)
15 cd04018 C2C_Ferlin C2 domain t 27.7 1.5E+02 0.0032 29.7 6.0 81 144-245 2-107 (151)
16 COG1652 XkdP Uncharacterized p 26.9 33 0.00071 36.6 1.4 33 837-869 213-255 (269)
17 cd08383 C2A_RasGAP C2 domain ( 21.8 5.5E+02 0.012 23.1 8.1 14 144-157 2-15 (117)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.48 E-value=2.6e-13 Score=126.53 Aligned_cols=135 Identities=17% Similarity=0.352 Sum_probs=117.2
Q ss_pred CcccccceEEEEEeeecCCCcCCCCCeeEEEEEeeecCCCceeecCcccccccccccceeeeeeEEeeeCCCCCcccccc
Q 046861 136 GMQKLSCLFSVEVVTVQGLPASMNGLRLSVCVRKKETKDGAVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRFEP 215 (870)
Q Consensus 136 G~rR~~ClFSv~VhsieGLPaSmnGlrL~V~vrkketkdg~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~KyE~ 215 (870)
+++++.|.|.|+||.++++|. .+..+.|.|+|...+.+..+|.++.|.+|.|.|+|++.+.|++|... +..+||+
T Consensus 1 ~~~~~kf~~~l~i~~l~~~p~--~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~---k~~~~~~ 75 (143)
T PF10358_consen 1 KKKAVKFQFDLTIHELENLPS--SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDK---KSKEFQP 75 (143)
T ss_pred CCceeeEEEEEEEEEeECcCC--CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcC---CCCcEee
Confidence 367899999999999999999 88999999999644444799999999999999999999999999983 5568999
Q ss_pred cceEEEEEecc-ccc-ccccccccchhhHhHHhHHhhhcCcccccceeccccccc-ccccEEEEEecEEEEe
Q 046861 216 RPFWIYVFAID-AQE-LNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK-AKGGELVLKLGFQIME 284 (870)
Q Consensus 216 r~F~l~~~~v~-a~e-ldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk-AkGa~L~v~~g~qvm~ 284 (870)
+.+.++|..+. ... ..||++.+||++++..+ ...++..|.|.+. ..+|.|.|++.|..++
T Consensus 76 K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~---------~~~~~~~~~l~~~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 76 KELKFSVFEVDGSGKKKVLGKVSINLAEYANED---------EEPITVRLLLKKCKKSNATLSISISLSELR 138 (143)
T ss_pred EEEEEEEEEecCCCccceEEEEEEEHHHhhCcC---------CCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence 99999999883 233 48999999999999865 3356677888887 9999999999999887
No 2
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=72.33 E-value=32 Score=33.14 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=65.2
Q ss_pred eEEEEEeeecCCCcC-CCCCe---eEEEEEeeecCCCceeecCcccccc--cccccceeeeeeEEeeeCCCCCccccccc
Q 046861 143 LFSVEVVTVQGLPAS-MNGLR---LSVCVRKKETKDGAVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPR 216 (870)
Q Consensus 143 lFSv~VhsieGLPaS-mnGlr---L~V~vrkketkdg~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r 216 (870)
...|+|+.+++||.. ..|.. +-|++... ...|. |..+ .-.|+|++.+.++ .... .
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~-----~~kT~---vi~~t~nP~Wne~f~f~v~----~~~~-------~ 76 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ-----EHKTK---VVSDTLNPKWNSSMQFFVK----DLEQ-------D 76 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECCE-----eeecc---ccCCCCCCccCceEEEEec----CccC-------C
Confidence 578999999999874 44432 22222110 12222 2222 4678888766332 1100 1
Q ss_pred ceEEEEEecccc----cccccccccchhhHhHHhHHhhhcCcccccceecccccccccccEEEEEecEE
Q 046861 217 PFWIYVFAIDAQ----ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGKAKGGELVLKLGFQ 281 (870)
Q Consensus 217 ~F~l~~~~v~a~----eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGkAkGa~L~v~~g~q 281 (870)
.|.+.+.|.. .--||.-.++|..|+.++.. ..+.|..-..|.++.+| ++.|++.||
T Consensus 77 --~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~~~~~~~~~~~~g-~i~l~~~~~ 136 (136)
T cd08375 77 --VLCITVFDRDFFSPDDFLGRTEIRVADILKETKE------SKGPITKRLLLHEVPTG-EVVVKLDLQ 136 (136)
T ss_pred --EEEEEEEECCCCCCCCeeEEEEEEHHHhcccccc------CCCcEEEEeccccccce-eEEEEEEeC
Confidence 2333333433 23589999999999875222 22567777889888888 999998875
No 3
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=70.20 E-value=35 Score=30.98 Aligned_cols=113 Identities=22% Similarity=0.354 Sum_probs=62.0
Q ss_pred EEEEEeeecCCCc-C-CCC-CeeEEEEEeeecCC-CceeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccccc
Q 046861 144 FSVEVVTVQGLPA-S-MNG-LRLSVCVRKKETKD-GAVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPRP 217 (870)
Q Consensus 144 FSv~VhsieGLPa-S-mnG-lrL~V~vrkketkd-g~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r~ 217 (870)
..|.|+.+++||. . +.| ..--|.++-. .+ ..-+|. +.++ .-.|+|++.+.+. . ....+++
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~--~~~~~~kT~---~~~~~~~P~Wne~~~~~v~----~-~~~~l~~---- 69 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSIS--NRRELARTK---VKKDTSNPVWNETKYILVN----S-LTEPLNL---- 69 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEEC--CCCcceEee---eecCCCCCcceEEEEEEeC----C-CCCEEEE----
Confidence 6789999999994 2 334 1222333321 10 112222 2233 6789999987554 1 1122222
Q ss_pred eEEEEEecccccccccccccchhhHhHHhHHhhhcCcccccceecccccccccccEEEEEecE
Q 046861 218 FWIYVFAIDAQELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGKAKGGELVLKLGF 280 (870)
Q Consensus 218 F~l~~~~v~a~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGkAkGa~L~v~~g~ 280 (870)
.||-.---...-.+|.-.++|.+|+.. ...+.|...+...||.. |+|.|++-|
T Consensus 70 -~v~d~~~~~~d~~iG~~~~~l~~l~~~--------~~~~~~~~~~~~~~k~~-G~i~~~l~~ 122 (124)
T cd04044 70 -TVYDFNDKRKDKLIGTAEFDLSSLLQN--------PEQENLTKNLLRNGKPV-GELNYDLRF 122 (124)
T ss_pred -EEEecCCCCCCceeEEEEEEHHHhccC--------ccccCcchhhhcCCccc-eEEEEEEEe
Confidence 122111111334699999999988853 22334555566777765 699998876
No 4
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=62.90 E-value=39 Score=30.53 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=54.9
Q ss_pred eEEEEEeeecCCCcCCCCCeeEEEEEeeecCCCceeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccccceEE
Q 046861 143 LFSVEVVTVQGLPASMNGLRLSVCVRKKETKDGAVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPRPFWI 220 (870)
Q Consensus 143 lFSv~VhsieGLPaSmnGlrL~V~vrkketkdg~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r~F~l 220 (870)
+..|.||.+++||..-.+-....+++=+ -.+..++ .+|..+ .-.|+|++.+.|.- .+. . .|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~--~~~~~~k--T~v~~~t~nP~Wne~f~f~v~~-----~~~------~--~l 63 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELT--VGKTTQK--SKVKERTNNPVWEEGFTFLVRN-----PEN------Q--EL 63 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEE--ECCEEEe--CccccCCCCCcccceEEEEeCC-----CCC------C--EE
Confidence 3579999999999853222221112111 1122222 234444 55789998886631 111 1 12
Q ss_pred EEEecccc-cccccccccchhhHhHHhHHhhhcCcccccceecccccccc
Q 046861 221 YVFAIDAQ-ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGKA 269 (870)
Q Consensus 221 ~~~~v~a~-eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGkA 269 (870)
.+.+.|.. .-.+|+-.++|+.|+.. .+....+| |+|.++.
T Consensus 64 ~v~v~d~~~~~~iG~~~i~l~~l~~~------~~~~~~~w---~~L~~~g 104 (105)
T cd04050 64 EIEVKDDKTGKSLGSLTLPLSELLKE------PDLTLDQP---FPLDNSG 104 (105)
T ss_pred EEEEEECCCCCccEEEEEEHHHhhcc------ccceeeee---EecCCCC
Confidence 22233322 44699999999999853 12345566 8887653
No 5
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=57.00 E-value=76 Score=29.17 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=61.0
Q ss_pred eEEEEEeeecCCCcCC-CCCe---eEEEEEeeecCCCceeecCcccccc--cccccceeeeeeEEeeeCCCCCccccccc
Q 046861 143 LFSVEVVTVQGLPASM-NGLR---LSVCVRKKETKDGAVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPR 216 (870)
Q Consensus 143 lFSv~VhsieGLPaSm-nGlr---L~V~vrkketkdg~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r 216 (870)
++.|.|+.+++||..- .|.. +-|.+... ..-..+| +|.++ .-.|+|++.+.+. .. ....+
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT---~vv~~t~nP~Wne~f~f~i~--~~--~~~~l----- 66 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTA--SDEKKRT---KTIKNSINPVWNETFEFRIQ--SQ--VKNVL----- 66 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCC--CCccCcc---ceecCCCCCccceEEEEEeC--cc--cCCEE-----
Confidence 4789999999999752 2221 22222110 0011222 33333 5679999887432 11 11112
Q ss_pred ceEEEEEecccccccccccccchhhHhHHhHHhhhcCcccccceecccccccccccEEEEEecEEE
Q 046861 217 PFWIYVFAIDAQELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGKAKGGELVLKLGFQI 282 (870)
Q Consensus 217 ~F~l~~~~v~a~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGkAkGa~L~v~~g~qv 282 (870)
.|.||-.-.- ..--+|+-.++|+.|.+ +. ..+..|.|..+ ..|+|++.|.+++
T Consensus 67 ~v~v~d~d~~-~~~~iG~~~~~l~~l~~--------g~---~~~~~~~L~~~-~~g~l~~~~~~~~ 119 (119)
T cd04036 67 ELTVMDEDYV-MDDHLGTVLFDVSKLKL--------GE---KVRVTFSLNPQ-GKEELEVEFLLEL 119 (119)
T ss_pred EEEEEECCCC-CCcccEEEEEEHHHCCC--------CC---cEEEEEECCCC-CCceEEEEEEeeC
Confidence 2223221000 22359999999988754 22 34556888766 4669999998763
No 6
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=52.08 E-value=1.6e+02 Score=26.97 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=58.2
Q ss_pred eEEEEEeeecCCCcC----CCCCeeEEEEEeeecC--CCc-eeecCcccccc-cccccceeeeeeEEeeeCCCCCccccc
Q 046861 143 LFSVEVVTVQGLPAS----MNGLRLSVCVRKKETK--DGA-VHTMPSRVSQG-AADFEETLFVKCHVYFTPGNGKPLRFE 214 (870)
Q Consensus 143 lFSv~VhsieGLPaS----mnGlrL~V~vrkketk--dg~-~qT~PaRV~qG-~AeFeEtL~~rCsVY~srg~~~~~KyE 214 (870)
.+.|.|+.+++||.. ......-|.++-.... +.. ..|. +.-..+ .-+|+|++.+.+. . +.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~-~~~~~~~~P~w~e~f~f~~~----~-~~------ 70 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTK-VVKNNGFNPVWNETFEFDVT----V-PE------ 70 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeee-eecCCCcCCccCCcEEEEEe----C-CC------
Confidence 368999999999864 2233333333321101 111 2222 112345 7789999877554 1 11
Q ss_pred ccceEEEEEecccc---cccccccccchhhHhHHhHHhhhcCcccccceeccccccc-ccccEEEEEecE
Q 046861 215 PRPFWIYVFAIDAQ---ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK-AKGGELVLKLGF 280 (870)
Q Consensus 215 ~r~F~l~~~~v~a~---eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk-AkGa~L~v~~g~ 280 (870)
.-.|.+.+.+.. .-.+|.-.+.|+.|. .+. + |-.=+...|. +.+|.|.|++-+
T Consensus 71 --~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~--------~g~--~-~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 71 --LAFLRFVVYDEDSGDDDFLGQACLPLDSLR--------QGY--R-HVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred --eEEEEEEEEeCCCCCCcEeEEEEEEhHHhc--------Cce--E-EEEecCCCCCCCcceeEEEEEEE
Confidence 111223333332 356888888887762 211 1 2222333455 677888888765
No 7
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=50.92 E-value=83 Score=25.86 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=34.6
Q ss_pred EEEEEeeecCCCc-CCC-CCeeEEEEEeeecCCCc--eeecCcccccccccccceeeee
Q 046861 144 FSVEVVTVQGLPA-SMN-GLRLSVCVRKKETKDGA--VHTMPSRVSQGAADFEETLFVK 198 (870)
Q Consensus 144 FSv~VhsieGLPa-Smn-GlrL~V~vrkketkdg~--~qT~PaRV~qG~AeFeEtL~~r 198 (870)
..|+||.++|||. .++ -...-|.++-- .... ..|...+-. ....|+|++.+.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~--~~~~~~~~T~~~~~~-~~P~w~e~~~~~ 56 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVN--GSESTKYKTKVKKNT-SNPVWNEEFEFP 56 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEE--TTTCEEEEECCBSSB-SSEEEEEEEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecc--eeeeeeeeeeeeecc-ccceeeeeeeee
Confidence 3689999999998 333 44444555442 2222 566666555 788999998885
No 8
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=47.64 E-value=79 Score=29.40 Aligned_cols=120 Identities=16% Similarity=0.256 Sum_probs=59.5
Q ss_pred EEEEEeeecCCCcC-CCCCe---eEEEEEeeecCCC-ceeecCccccccc--ccccceeeeeeEEeeeCCCCCccccccc
Q 046861 144 FSVEVVTVQGLPAS-MNGLR---LSVCVRKKETKDG-AVHTMPSRVSQGA--ADFEETLFVKCHVYFTPGNGKPLRFEPR 216 (870)
Q Consensus 144 FSv~VhsieGLPaS-mnGlr---L~V~vrkketkdg-~~qT~PaRV~qG~--AeFeEtL~~rCsVY~srg~~~~~KyE~r 216 (870)
..|.|+.+++||.. +.|.. +.|++... +++ .....-.+|..+. -.|+|++.+.++ .. ...+
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~--~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~----~~-~~~l----- 69 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDP--DGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN----PR-EHRL----- 69 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECC--CCCCcccceeeeEEcCCCCCcEeeEEEEEEc----CC-CCEE-----
Confidence 57899999999864 33422 33444321 111 1111122455553 458888776432 11 1111
Q ss_pred ceEEEEEecccccccccccccchhhHhHHhHHhhhcCcccccceeccccccc----ccccEEEEEecE
Q 046861 217 PFWIYVFAIDAQELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK----AKGGELVLKLGF 280 (870)
Q Consensus 217 ~F~l~~~~v~a~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk----AkGa~L~v~~g~ 280 (870)
.|.||-.---...--+|.-.++|+.|.... .-.+ -+.=...|+|.++ ...|+|.++|.|
T Consensus 70 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~--~~~~---~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 70 LFEVFDENRLTRDDFLGQVEVPLNNLPTET--PGNE---RRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred EEEEEECCCCCCCCeeEEEEEEHHHCCCcC--cccc---ccccchheeeeecCCCCcceeEEEEEEee
Confidence 122321111112346899999999888531 0000 0111223556533 247899999877
No 9
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=47.62 E-value=3.6 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=19.0
Q ss_pred cCCceeEEEeehhhcc-----ccCCCccCCCcccC
Q 046861 840 KGQDLLWSISSRVMAD-----MWLKPIRNPDVKFS 869 (870)
Q Consensus 840 ~~~D~LWSISsrv~a~-----mw~~~~RNPDV~~~ 869 (870)
+.+|+||+|+.+...+ .|++.+.||+.+.+
T Consensus 2 ~~gdtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~ 36 (44)
T TIGR02899 2 QKGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYP 36 (44)
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCC
Confidence 5689999999985322 22344566665543
No 10
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=47.15 E-value=1.1e+02 Score=28.40 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=60.5
Q ss_pred EeeecCCCcCCCCCe---eEEEEEeeecCCCceeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccccceEEEE
Q 046861 148 VVTVQGLPASMNGLR---LSVCVRKKETKDGAVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPRPFWIYV 222 (870)
Q Consensus 148 VhsieGLPaSmnGlr---L~V~vrkketkdg~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r~F~l~~ 222 (870)
|..+++||. +.|.. +-|++... ..+ .||..+ .-.|+|++.+.+.-.+ .....+ .|.||-
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~-----~~k---T~v~~~~~nP~Wne~f~f~~~~~~--~~~~~l-----~~~v~d 65 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGV-----KKK---TRVLENELNPVWNETFEWPLAGSP--DPDESL-----EIVVKD 65 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCE-----eee---cceeCCCcCCcccceEEEEeCCCc--CCCCEE-----EEEEEE
Confidence 667788888 55532 22222211 122 234443 5679999888553211 011122 233332
Q ss_pred EecccccccccccccchhhHhHHhHHhhhcCcccccceecccc---cccccccEEEEEecEEEEeccC
Q 046861 223 FAIDAQELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNL---SGKAKGGELVLKLGFQIMEKDG 287 (870)
Q Consensus 223 ~~v~a~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~L---sGkAkGa~L~v~~g~qvm~~D~ 287 (870)
.-.-...--+|.-.++|..|+. + ...-.| ++| .|+-.+|+|.+++.|.-.+.|+
T Consensus 66 ~~~~~~d~~iG~~~~~l~~l~~-------~-~~~~~~---~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 66 YEKVGRNRLIGSATVSLQDLVS-------E-GLLEVT---EPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred CCCCCCCceEEEEEEEhhHccc-------C-CceEEE---EeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 2111122358999999998874 1 222223 455 3555678999999998886333
No 11
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=38.50 E-value=2.5e+02 Score=25.88 Aligned_cols=113 Identities=24% Similarity=0.404 Sum_probs=56.2
Q ss_pred ceEEEEEeeecCCCcC-CCCCe-eEEEEEeeecCCCceeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccccc
Q 046861 142 CLFSVEVVTVQGLPAS-MNGLR-LSVCVRKKETKDGAVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPRP 217 (870)
Q Consensus 142 ClFSv~VhsieGLPaS-mnGlr-L~V~vrkketkdg~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r~ 217 (870)
|.|+|.|+.+++||.. .+|.. --|.+.- ..+..+..=.++.++ .-.|+|++.+.+ ..+ ..
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~---~~~~~~~~kT~~~~~t~~P~Wne~f~f~i----~~~---------~~ 64 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVD---TNGKRRIAKTRTIYDTLNPRWDEEFELEV----PAG---------EP 64 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEE---CCCCeeeecccEecCCCCCcccceEEEEc----CCC---------CC
Confidence 7899999999999974 23321 1122221 111011111223344 345888876632 221 11
Q ss_pred eEEEEEeccc----ccccccccccchhhHhHHhHHhhhcCcccccceecccccccccccEEEEEecEE
Q 046861 218 FWIYVFAIDA----QELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGKAKGGELVLKLGFQ 281 (870)
Q Consensus 218 F~l~~~~v~a----~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGkAkGa~L~v~~g~q 281 (870)
..|.+.+.+. +.--+|.-.++|..+... .++.. .+..|.|.+ .|.+.+.+.+.
T Consensus 65 ~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~-----~~~~~---~~~w~~l~~---~g~i~l~~~~~ 121 (126)
T cd04043 65 LWISATVWDRSFVGKHDLCGRASLKLDPKRFG-----DDGLP---REIWLDLDT---QGRLLLRVSME 121 (126)
T ss_pred CEEEEEEEECCCCCCCceEEEEEEecCHHHcC-----CCCCC---ceEEEEcCC---CCeEEEEEEEe
Confidence 1233333443 233478888888765332 11122 344588865 46777766553
No 12
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=31.64 E-value=2.3e+02 Score=26.47 Aligned_cols=104 Identities=16% Similarity=0.277 Sum_probs=58.8
Q ss_pred EEEEeeecCCCcCCCCCe---eEEEEEeeecCCCc-eeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccccce
Q 046861 145 SVEVVTVQGLPASMNGLR---LSVCVRKKETKDGA-VHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPRPF 218 (870)
Q Consensus 145 Sv~VhsieGLPaSmnGlr---L~V~vrkketkdg~-~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r~F 218 (870)
.|.|+.++|||. ..|.. +.|++.. .+. .+|. |..+ .-.|+|++.+.. ... .+.+
T Consensus 2 ~v~v~~A~~L~~-~~g~~dpyv~v~~~~----~~~~~kT~---v~~~t~nP~Wne~f~f~~----~~~--------~~~l 61 (126)
T cd08678 2 LVKNIKANGLSE-AAGSSNPYCVLEMDE----PPQKYQSS---TQKNTSNPFWDEHFLFEL----SPN--------SKEL 61 (126)
T ss_pred EEEEEEecCCCC-CCCCcCCEEEEEECC----CCcEEEeE---EEecCCCCccCceEEEEe----CCC--------CCEE
Confidence 589999999999 66633 2222210 011 2222 3333 578999987742 111 1222
Q ss_pred EEEEEecccc----cccccccccchhhHhHHhHHhhhcCcccccceeccccccc-----ccccEEEEEecEE
Q 046861 219 WIYVFAIDAQ----ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK-----AKGGELVLKLGFQ 281 (870)
Q Consensus 219 ~l~~~~v~a~----eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk-----AkGa~L~v~~g~q 281 (870)
.+.+.|.. .--||.-.++|..|+.. ....+| |+|.++ ...|+|.+.+.|.
T Consensus 62 --~~~v~d~~~~~~~~~lG~~~i~l~~l~~~--------~~~~~~---~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 62 --LFEVYDNGKKSDSKFLGLAIVPFDELRKN--------PSGRQI---FPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred --EEEEEECCCCCCCceEEEEEEeHHHhccC--------CceeEE---EEecCCCCCCCCcceEEEEEEEEe
Confidence 22333333 34789999999998853 111233 677643 3578898888883
No 13
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=30.15 E-value=4.6e+02 Score=24.72 Aligned_cols=111 Identities=18% Similarity=0.315 Sum_probs=60.9
Q ss_pred cceEEEEEeeecCCCcCCC--CCeeEEEEEeeecCCCceeecCcccccc-cccccceeeeeeEEeeeCCCCCcccccccc
Q 046861 141 SCLFSVEVVTVQGLPASMN--GLRLSVCVRKKETKDGAVHTMPSRVSQG-AADFEETLFVKCHVYFTPGNGKPLRFEPRP 217 (870)
Q Consensus 141 ~ClFSv~VhsieGLPaSmn--GlrL~V~vrkketkdg~~qT~PaRV~qG-~AeFeEtL~~rCsVY~srg~~~~~KyE~r~ 217 (870)
-+.+.|.|..+++||+. + +--+.|++..+. ..+|. |.++ .-.|+|++.+.+ ..+.. +.
T Consensus 3 ~~~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~----~~kT~---v~~~~nP~WnE~f~f~~----~~~~~-------~~ 63 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK-HVPHPYCVISLNEVK----VARTK---VREGPNPVWSEEFVFDD----LPPDV-------NS 63 (126)
T ss_pred eeEEEEEEEEeeCCCCC-CCCCeeEEEEECCEe----EEEee---cCCCCCCccCCEEEEec----CCCCc-------CE
Confidence 35689999999999984 2 122334442210 12332 3233 456888876632 11110 23
Q ss_pred eEEEEEeccc--ccccccccccchhhHhHHhHHhhhcCcccccceeccccc-----ccccccEEEEEecEE
Q 046861 218 FWIYVFAIDA--QELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLS-----GKAKGGELVLKLGFQ 281 (870)
Q Consensus 218 F~l~~~~v~a--~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~Ls-----GkAkGa~L~v~~g~q 281 (870)
|.|.|.--+. ..-.+|.=.+.|+.+.+ +...-.| |.|. +....|+|.|++.|.
T Consensus 64 l~v~v~d~~~~~~d~~iG~v~i~l~~l~~--------~~~~~~W---~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 64 FTISLSNKAKRSKDSEIAEVTVQLSKLQN--------GQETDEW---YPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEEECCCCCCCCeEEEEEEEHhHccC--------CCcccEe---EEcccCCCCCCCcCcEEEEEEEEE
Confidence 4444322111 22358888888887765 2223345 4443 456679999999885
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=27.69 E-value=4e+02 Score=24.83 Aligned_cols=109 Identities=19% Similarity=0.344 Sum_probs=55.9
Q ss_pred EEEEeeecCCCcC-CCCC---eeEEEEEeeecCCCceeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccccce
Q 046861 145 SVEVVTVQGLPAS-MNGL---RLSVCVRKKETKDGAVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEPRPF 218 (870)
Q Consensus 145 Sv~VhsieGLPaS-mnGl---rL~V~vrkketkdg~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~r~F 218 (870)
.|+|+.++|||+. .+|. =..|++.+. ...|. |..+ .-.|+|++.+.++....... ..+.
T Consensus 2 ~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~-----~~kT~---v~~~t~nP~Wne~f~F~v~~~~~~~~------~~~~- 66 (126)
T cd08682 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKE-----KYSTS---VKEKTTSPVWKEECSFELPGLLSGNG------NRAT- 66 (126)
T ss_pred EEEEEECcCCcCCCCCcCCCceEEEEECCe-----eeeee---eecCCCCCEeCceEEEEecCcccCCC------cCCE-
Confidence 5899999999863 2332 122333221 22333 4333 56799988775543222100 0122
Q ss_pred EEEEEecccc----cccccccccchhhHhHHhHHhhhcCcccccceeccccccc-----ccccEEEEEe
Q 046861 219 WIYVFAIDAQ----ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK-----AKGGELVLKL 278 (870)
Q Consensus 219 ~l~~~~v~a~----eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk-----AkGa~L~v~~ 278 (870)
|.+.+.+-. .--+|.-.++|+.|... .+.....| |+|.++ ...|+|.|++
T Consensus 67 -l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~------~~~~~~~W---~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 67 -LQLTVMHRNLLGLDKFLGQVSIPLNDLDED------KGRRRTRW---FKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred -EEEEEEEccccCCCceeEEEEEEHHHhhcc------CCCcccEE---EECcCCCCCCccccceEEEEe
Confidence 222222222 23589999999988631 12233455 555432 3458888875
No 15
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=27.66 E-value=1.5e+02 Score=29.71 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=47.5
Q ss_pred EEEEEeeecCCCcCCC-------------------CCeeEEEEEeeecCCCceeecCcccccc--cccccceeeeeeEEe
Q 046861 144 FSVEVVTVQGLPASMN-------------------GLRLSVCVRKKETKDGAVHTMPSRVSQG--AADFEETLFVKCHVY 202 (870)
Q Consensus 144 FSv~VhsieGLPaSmn-------------------GlrL~V~vrkketkdg~~qT~PaRV~qG--~AeFeEtL~~rCsVY 202 (870)
|.|.|+.+++||+ || +-=+-|++..+ ..+|. |... .-.|+|+|.+.+.+.
T Consensus 2 ~~V~V~~A~dLp~-~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~-----~~kT~---v~~~t~nPvWNE~f~f~v~~p 72 (151)
T cd04018 2 FIFKIYRAEDLPQ-MDSGIMANVKKAFLGEKKELVDPYVEVSFAGQ-----KVKTS---VKKNSYNPEWNEQIVFPEMFP 72 (151)
T ss_pred eEEEEEEeCCCCc-cChhhhccceeccccCCCCCcCcEEEEEECCE-----eeecc---eEcCCCCCCcceEEEEEeeCC
Confidence 7899999999998 33 11123333322 13332 3333 568999999875432
Q ss_pred eeCCCCCcccccccceEEEEEeccccc----ccccccccchhhHhHH
Q 046861 203 FTPGNGKPLRFEPRPFWIYVFAIDAQE----LNFGRHSVDLSQLIHE 245 (870)
Q Consensus 203 ~srg~~~~~KyE~r~F~l~~~~v~a~e----ldlGkh~VDLs~Ll~~ 245 (870)
.. . .. |.+.+.|-+. -.+|...+||+.|+..
T Consensus 73 ~~---~-------~~--l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 73 PL---C-------ER--IKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred Cc---C-------CE--EEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 11 1 12 2233344332 3699999999999874
No 16
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown]
Probab=26.90 E-value=33 Score=36.59 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=25.5
Q ss_pred ccccCCceeEEEeehhhccccC--------C--CccCCCcccC
Q 046861 837 VFIKGQDLLWSISSRVMADMWL--------K--PIRNPDVKFS 869 (870)
Q Consensus 837 ~~~~~~D~LWSISsrv~a~mw~--------~--~~RNPDV~~~ 869 (870)
-+.+++|+||-||=++-++.+. + .++|||-|+|
T Consensus 213 ~~v~rgDTl~~is~~~Yg~~~~y~~I~~aNk~~~~~~p~~I~p 255 (269)
T COG1652 213 NTVKRGDTLWQISKKVYGDGVEYRKIAEANKALVLDNPDKIKP 255 (269)
T ss_pred EEeccCCcccccchhhcCcceEEEeHhhhhhhhccCCCCcCCC
Confidence 3357999999999988665432 5 4999998877
No 17
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=21.81 E-value=5.5e+02 Score=23.09 Aligned_cols=14 Identities=14% Similarity=0.562 Sum_probs=12.1
Q ss_pred EEEEEeeecCCCcC
Q 046861 144 FSVEVVTVQGLPAS 157 (870)
Q Consensus 144 FSv~VhsieGLPaS 157 (870)
..|.|+.++|||..
T Consensus 2 L~v~vi~a~~l~~~ 15 (117)
T cd08383 2 LRLRILEAKNLPSK 15 (117)
T ss_pred eEEEEEEecCCCcC
Confidence 36889999999987
Done!