Query 046861
Match_columns 870
No_of_seqs 62 out of 64
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wfj_A Putative elicitor-respo 75.9 23 0.00077 31.4 10.5 123 138-287 6-135 (136)
2 3l9b_A Otoferlin; C2-domain, b 68.5 19 0.00064 35.0 8.7 121 142-284 21-142 (144)
3 2nq3_A Itchy homolog E3 ubiqui 58.3 48 0.0017 31.6 9.5 116 141-284 35-163 (173)
4 3kwu_A MUNC13-1; calcium bindi 57.8 1E+02 0.0035 27.6 11.1 118 136-282 11-147 (148)
5 2ep6_A MCTP2 protein; beta san 45.5 1.6E+02 0.0054 25.9 11.8 118 136-280 7-130 (133)
6 2dmh_A Myoferlin; beta-sandwic 34.4 2.4E+02 0.0082 24.8 10.8 118 142-281 7-132 (140)
7 2l9y_A CVNH-LYSM lectin; carbo 30.7 3 0.0001 40.6 -3.8 31 838-869 66-101 (167)
8 3jzy_A Intersectin 2; C2 domai 27.3 2.5E+02 0.0084 30.3 9.9 115 143-283 388-509 (510)
9 2r83_A Synaptotagmin-1; C2A-C2 26.7 2.6E+02 0.0089 27.6 9.2 117 141-281 18-146 (284)
10 3m7f_B E3 ubiquitin-protein li 18.4 5.7E+02 0.019 23.6 9.3 119 141-281 7-140 (176)
No 1
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=75.94 E-value=23 Score=31.36 Aligned_cols=123 Identities=13% Similarity=0.147 Sum_probs=68.1
Q ss_pred ccccceEEEEEeeecCCCcC-CCCC-eeEEEEEeeecCCCceeecCcccccccccccceeeeeeEEeeeCCCCCcccccc
Q 046861 138 QKLSCLFSVEVVTVQGLPAS-MNGL-RLSVCVRKKETKDGAVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRFEP 215 (870)
Q Consensus 138 rR~~ClFSv~VhsieGLPaS-mnGl-rL~V~vrkketkdg~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~KyE~ 215 (870)
.+....+.|+|+.+++||+. .+|. ---|.++- .+...+|...+=-.-.-.|+|++.+.+. . ..
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~~~~~~~~nP~Wne~f~f~v~----~-~~------- 70 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC---RTQDQKSNVAEGMGTTPEWNETFIFTVS----E-GT------- 70 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEES---SSCEEECCCCTTCCSSCEEEEEEEEEEE----S-SC-------
T ss_pred CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEE---CCccceeEeccCCCCCCccCcEEEEEEC----C-CC-------
Confidence 34456789999999999973 2232 11222332 1223444222211225689999887543 1 11
Q ss_pred cceEEEEEecccc----cccccccccchhhHhHHhHHhhhcCcccccceecccc-cccccccEEEEEecEEEEeccC
Q 046861 216 RPFWIYVFAIDAQ----ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNL-SGKAKGGELVLKLGFQIMEKDG 287 (870)
Q Consensus 216 r~F~l~~~~v~a~----eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~L-sGkAkGa~L~v~~g~qvm~~D~ 287 (870)
. .|.+.+.|.. .--+|.-.|+|+.|+... .....| |+| .+....|+|.|++.|.-...++
T Consensus 71 ~--~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~-------~~~~~w---~~L~~~~~~~G~i~l~l~~~p~~~~~ 135 (136)
T 1wfj_A 71 T--ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG-------SIPPTA---YNVVKDEEYKGEIWVALSFKPSGPSS 135 (136)
T ss_dssp C--EEEEEECCSSSCTTTCCSEEEEEESHHHHHHS-------EEEEEE---EEEEETTEEEEEEEEEEEEEECCSCC
T ss_pred C--EEEEEEEECCCCCCCceEEEEEEEHHHhccCC-------CCCcEE---EEeecCCccCEEEEEEEEEEeCCCCC
Confidence 1 2333344443 335899999999986531 112233 444 2345568999999887655333
No 2
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=68.47 E-value=19 Score=35.01 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=74.7
Q ss_pred ceEEEEEeeecCCCcCCCCCeeEEEEEeeecCCCceeecCcccccccccccceeeeeeEEeeeCCCCCcccccccceEEE
Q 046861 142 CLFSVEVVTVQGLPASMNGLRLSVCVRKKETKDGAVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRFEPRPFWIY 221 (870)
Q Consensus 142 ClFSv~VhsieGLPaSmnGlrL~V~vrkketkdg~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~KyE~r~F~l~ 221 (870)
-.+.|.|..+.|||- =-+.-..|++|.. -.+|.-.+-+.=-+.|+|++.. .+|+.-..+..+. |.||
T Consensus 21 msL~V~l~~a~~Lpg-~~Dp~akv~FRg~-----k~kTkvi~~~~~npvfnE~F~w--pl~~~ld~~e~L~-----v~V~ 87 (144)
T 3l9b_A 21 MALIVHLKTVSELRG-RADRIAKVTFRGQ-----SFYSRVLENCEDVADFDETFRW--PVASSIDRNEVLE-----IQIF 87 (144)
T ss_dssp EEEEEEEEEEESCCS-CEEEEEEEEETTE-----EEECCCEEEECSCEEEEEEEEE--EESSCCCTTCEEE-----EEEE
T ss_pred EEEEEEEEEecCCCC-CCCCeEEEEEecc-----ceeeEEeccCCCCceEcceEEe--cCCCCCCCCCEEE-----EEEE
Confidence 467888899999994 1223345677431 2344333322347899999888 8887444333331 2222
Q ss_pred EE-ecccccccccccccchhhHhHHhHHhhhcCcccccceecccccccccccEEEEEecEEEEe
Q 046861 222 VF-AIDAQELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGKAKGGELVLKLGFQIME 284 (870)
Q Consensus 222 ~~-~v~a~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGkAkGa~L~v~~g~qvm~ 284 (870)
-. -+.-.. -+|...|=|..|+-. .+.--+++=....+++-||++.+.+.||-.+
T Consensus 88 d~~~v~~nr-lIG~~~i~Lq~lv~~--------~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 88 NYSKVFSNK-LIGTFRMVLQKVVEE--------NRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp EECTTSCCE-EEEEEEEESHHHHHH--------SEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred ECccccCCC-EEEEEEEEhHHhccC--------CeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence 11 011122 377777777777653 2333457778888999999999999998653
No 3
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=58.28 E-value=48 Score=31.57 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=64.2
Q ss_pred cceEEEEEeeecCCCcCCCCC--eeEEEEEeeecCCCc-eeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccc
Q 046861 141 SCLFSVEVVTVQGLPASMNGL--RLSVCVRKKETKDGA-VHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEP 215 (870)
Q Consensus 141 ~ClFSv~VhsieGLPaSmnGl--rL~V~vrkketkdg~-~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~ 215 (870)
...+.|.|+.+++||+.++.. .--|.+.- ++. .+| +|..+ .-.|+|++.+.+ . . .
T Consensus 35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~----~~~~~kT---~v~~~tlnP~Wne~f~f~v----~--~-------~ 94 (173)
T 2nq3_A 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTV----DGQSKKT---EKCNNTNSPKWKQPLTVIV----T--P-------V 94 (173)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEE----TTEEEEC---CCCSSCSSCEEEEEEEEEE----C--T-------T
T ss_pred ceEEEEEEEEeECCCCcccCCCCCeEEEEEE----CCEEeEc---cccCCCCCCeECCEEEEEe----C--C-------C
Confidence 344789999999999443322 22233322 222 233 34434 567999998854 1 1 1
Q ss_pred cceEEEEEecccc----cccccccccchhhHhHHhHHhhhcCcccccceeccccccc----ccccEEEEEecEEEEe
Q 046861 216 RPFWIYVFAIDAQ----ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK----AKGGELVLKLGFQIME 284 (870)
Q Consensus 216 r~F~l~~~~v~a~----eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk----AkGa~L~v~~g~qvm~ 284 (870)
.. |.+.+.|.. .--||.-.++|..|+...-. ....+...|+|..+ ...|+|.|+|.|...+
T Consensus 95 ~~--L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~------~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 95 SK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNM------KLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp CE--EEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTT------EESSEEEEEEEEESSCTTSEEEEEEEEEESEECC
T ss_pred CE--EEEEEEECCCCCCCceEEEEEEEHHHhcccCCC------CcceeEEEEECccCCCCCcccEEEEEEEeeeecc
Confidence 22 222233433 23589999999998864211 11122334555443 3568999999887665
No 4
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=57.80 E-value=1e+02 Score=27.56 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=63.1
Q ss_pred CcccccceEEEEEeeecCCCcC-CCCCe-eEEEEEeeecCCCceeecCcccccccccccceeeeeeEEeeeCCCCCcccc
Q 046861 136 GMQKLSCLFSVEVVTVQGLPAS-MNGLR-LSVCVRKKETKDGAVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRF 213 (870)
Q Consensus 136 G~rR~~ClFSv~VhsieGLPaS-mnGlr-L~V~vrkketkdg~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~Ky 213 (870)
|+..+.-.+.|+|+.+++||+. .+|.. --|.++- .....+|...+ -.-.-.|+|++.+.+. .. .
T Consensus 11 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~~~~-~t~nP~Wne~f~f~v~----~~-~----- 76 (148)
T 3kwu_A 11 GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIY-GNLNPVWEENFHFECH----NS-S----- 76 (148)
T ss_dssp ----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEE---TTEEEECCCCC-SCSSCEEEEEEEEEEC----ST-T-----
T ss_pred cccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE---CCEEEECCccC-CCCCCCcccEEEEEec----CC-C-----
Confidence 5666677889999999999973 34432 1222221 11133444333 1135678898777442 11 1
Q ss_pred cccceEEEEEeccc-------------ccccccccccchhhHhHHhHHhhhcCcccccceecccccc----cccccEEEE
Q 046861 214 EPRPFWIYVFAIDA-------------QELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSG----KAKGGELVL 276 (870)
Q Consensus 214 E~r~F~l~~~~v~a-------------~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsG----kAkGa~L~v 276 (870)
....|.|.--+. ..--+|.-.++|+.|. ....+| |+|.. ....|+|.|
T Consensus 77 --~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~----------~~~~~w---~~L~~~~~~~~~~G~i~l 141 (148)
T 3kwu_A 77 --DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS----------GEMDVW---YNLDKRTDKSAVSGAIRL 141 (148)
T ss_dssp --CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC----------SEEEEE---EECBCSSTTCCCCCEEEE
T ss_pred --CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc----------CCCCEE---EEcccCCCCCCCceEEEE
Confidence 222232222221 2345788889988771 223456 56642 124589999
Q ss_pred EecEEE
Q 046861 277 KLGFQI 282 (870)
Q Consensus 277 ~~g~qv 282 (870)
++.|.|
T Consensus 142 ~l~~e~ 147 (148)
T 3kwu_A 142 HISVEI 147 (148)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999874
No 5
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=45.48 E-value=1.6e+02 Score=25.90 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=64.6
Q ss_pred CcccccceEEEEEeeecCCCcC-CCCCe-eEEEEEeeecCCCceeecCcccccccccccceeeeeeEEeeeCCCCCcccc
Q 046861 136 GMQKLSCLFSVEVVTVQGLPAS-MNGLR-LSVCVRKKETKDGAVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRF 213 (870)
Q Consensus 136 G~rR~~ClFSv~VhsieGLPaS-mnGlr-L~V~vrkketkdg~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~Ky 213 (870)
+..+....+.|+|+.+++||+. ++|.. --|.++- .+...+|...+= .-.-.|+|++.+.+. . ....+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~~~~~-t~nP~wne~f~f~~~----~-~~~~l-- 75 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLEL---GNDRLQTHTVYK-NLNPEWNKVFTFPIK----D-IHDVL-- 75 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE---TTEEEECCCCSS-CSSCCCCEEEEEEES----C-TTCEE--
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEE---CCEEEEeeeecC-CCCCccccEEEEEec----C-CCCEE--
Confidence 3445567789999999999953 34432 1222222 111334443331 235789998887542 1 11111
Q ss_pred cccceEEEEEecccccccccccccchhhHhHHhHHhhhcCcccccceecccccc----cccccEEEEEecE
Q 046861 214 EPRPFWIYVFAIDAQELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSG----KAKGGELVLKLGF 280 (870)
Q Consensus 214 E~r~F~l~~~~v~a~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsG----kAkGa~L~v~~g~ 280 (870)
.|.||=.-.-...--+|.-.++|..|.. +. .+| |+|.. ....|+|.|++.|
T Consensus 76 ---~i~V~d~d~~~~~~~lG~~~i~l~~l~~--------~~--~~w---~~L~~~~~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 76 ---EVTVFDEDGDKPPDFLGKVAIPLLSIRD--------GQ--PNC---YVLKNKDLEQAFKGVIYLEMDL 130 (133)
T ss_dssp ---EEEEEEEETTEEEEECCBCEEEGGGCCS--------SC--CEE---CCCBCSCTTSCCSSEEEEEEEE
T ss_pred ---EEEEEECCCCCCCCeeEEEEEEHHHccC--------CC--ceE---EEeecCCCCCccceEEEEEEEE
Confidence 1222221111123468999999998742 11 245 66653 2467899998876
No 6
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.43 E-value=2.4e+02 Score=24.79 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=62.3
Q ss_pred ceEEEEEeeecCCCcCCCCCe-eEEEEEeeecCCCceeecCcccccccccccceeeeeeEEeeeCCCCCcccccccceEE
Q 046861 142 CLFSVEVVTVQGLPASMNGLR-LSVCVRKKETKDGAVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRFEPRPFWI 220 (870)
Q Consensus 142 ClFSv~VhsieGLPaSmnGlr-L~V~vrkketkdg~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~KyE~r~F~l 220 (870)
-.+.|+|+.+++||..=.|.. --|.++- .+...+|...+ -.-.-.|+|++.+.+. ... . -......
T Consensus 7 g~L~v~v~~a~~L~~~~~g~~dpyv~v~~---~~~~~kT~v~~-~t~nP~wne~f~f~v~----~~~---~-~~~~~l~- 73 (140)
T 2dmh_A 7 GMLRVIVESASNIPKTKFGKPDPIVSVIF---KDEKKKTKKVD-NELNPVWNEILEFDLR----GIP---L-DFSSSLG- 73 (140)
T ss_dssp CEEEEEEEEEESCCCCSSSCCCEEEEEEC---SSCEEECCCCC-SCSSCEEEEEEEEECS----SCC---C-CTTCEEE-
T ss_pred cEEEEEEEEeeCCCCCCCCCCCeEEEEEE---CCEeEEeeeec-CCCCCccCcEEEEEec----ccc---c-CCCCEEE-
Confidence 357899999999997422321 1222222 11123443322 1125679998877432 110 0 0012222
Q ss_pred EEEecccc----cccccccccchhhHhHHhHHhhhcCcccccceeccccc---ccccccEEEEEecEE
Q 046861 221 YVFAIDAQ----ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLS---GKAKGGELVLKLGFQ 281 (870)
Q Consensus 221 ~~~~v~a~----eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~Ls---GkAkGa~L~v~~g~q 281 (870)
+.+.|.. .--+|.-.|+|..|.. +.....|-.-++|. |+..+|+|.|++.|.
T Consensus 74 -i~V~d~d~~~~~~~lG~~~i~l~~l~~--------~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~ 132 (140)
T 2dmh_A 74 -IIVKDFETIGQNKLIGTATVALKDLTG--------DQSRSLPYKLISLLNEKGQDTGATIDLVIGYD 132 (140)
T ss_dssp -EEEEETTCSSSCCCCEEEEEEGGGTCS--------SSCEEEEEEEEEEECTTCCEEEEEEEEEEEEC
T ss_pred -EEEEECCCCCCCceEEEEEEEHHHhcc--------CCCceeEEeeeeccCCCCCCCCCEEEEEEEEE
Confidence 2223332 2257888889887753 23445675544454 445569999998874
No 7
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=30.71 E-value=3 Score=40.65 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=22.7
Q ss_pred cccCCceeEEEeehh---hcc--ccCCCccCCCcccC
Q 046861 838 FIKGQDLLWSISSRV---MAD--MWLKPIRNPDVKFS 869 (870)
Q Consensus 838 ~~~~~D~LWSISsrv---~a~--mw~~~~RNPDV~~~ 869 (870)
+.+.||+||+|+.|. ..+ .|+ .++|||.|.|
T Consensus 66 ~V~~GDTL~~IA~~~~~~~~~l~~~N-~~~~~~~i~~ 101 (167)
T 2l9y_A 66 TVQQGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYP 101 (167)
T ss_dssp EECTTCCHHHHHHHTTCCHHHHHHHH-TCCGGGCCCT
T ss_pred EECCCCcHHHHHHHcCCCHHHHHHHc-CCCCcccccC
Confidence 358999999999986 112 223 6899998876
No 8
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=27.34 E-value=2.5e+02 Score=30.28 Aligned_cols=115 Identities=13% Similarity=0.104 Sum_probs=61.7
Q ss_pred eEEEEEeeecCCCcC-CCCCe--eEEEEEeeecCCCceeecCcccccccccccceeeeeeEEeeeCCCCCcccccccceE
Q 046861 143 LFSVEVVTVQGLPAS-MNGLR--LSVCVRKKETKDGAVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRFEPRPFW 219 (870)
Q Consensus 143 lFSv~VhsieGLPaS-mnGlr--L~V~vrkketkdg~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~KyE~r~F~ 219 (870)
.+.|+|+.++|||+. .+|.. .++..-. .....|...+ -.-.-.|.|++.+.. + ..... .+.
T Consensus 388 ~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~----~~~~~T~~~~-~t~nP~w~e~f~f~~--~--~~~~~-------~l~ 451 (510)
T 3jzy_A 388 RLMVHVIEATELKACKPNGKSNPYCEISMG----SQSYTTRTIQ-DTLNPKWNFNCQFFI--K--DLYQD-------VLC 451 (510)
T ss_dssp EEEEEEEEEESCCCCSTTSCCCEEEEEEET----TEEEECCCCS-SCSSCEEEEEEEEEE--S--CTTTC-------EEE
T ss_pred eEEEEeceeecCCCCCCCCCCCeEEEEEEC----CeeccCCccC-CCCCCccCceEEEEe--c--CCCCC-------EEE
Confidence 578999999999753 45543 2222111 1122232221 112456888876632 1 11111 222
Q ss_pred EEEEeccccc----ccccccccchhhHhHHhHHhhhcCcccccceecccccccccccEEEEEecEEEE
Q 046861 220 IYVFAIDAQE----LNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGKAKGGELVLKLGFQIM 283 (870)
Q Consensus 220 l~~~~v~a~e----ldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGkAkGa~L~v~~g~qvm 283 (870)
|. +.|... --+|.-.++|+.|...- ... +....-|+|.|+ ..|+|.|++-+++.
T Consensus 452 ~~--v~d~d~~~~~d~lG~~~~~l~~l~~~~---~~~----~~~~~~~~l~~~-~~G~i~l~~~l~lf 509 (510)
T 3jzy_A 452 LT--LFDRDQFSPDDFLGRTEIPVAKIRTEQ---ESK----GPMTRRLLLHEV-PTGEVWVRFDLQLF 509 (510)
T ss_dssp EE--EEECCSSSSCCEEEEEEEEHHHHHHHH---HHH----CSCCEEEECBSS-SSCEEEEEEEEEEC
T ss_pred EE--EEeCCCCCCCCceEEEEEEHHHhcccc---CCC----CceeeeecCCCC-CCceEEEEEEEEEc
Confidence 22 223222 24788899999987641 111 123333678777 56799999988874
No 9
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=26.69 E-value=2.6e+02 Score=27.59 Aligned_cols=117 Identities=20% Similarity=0.318 Sum_probs=59.8
Q ss_pred cceEEEEEeeecCCCcC-CCCCe-eEEEEEeeecCCC-ceeecCcccccc--cccccceeeeeeEEeeeCCCCCcccccc
Q 046861 141 SCLFSVEVVTVQGLPAS-MNGLR-LSVCVRKKETKDG-AVHTMPSRVSQG--AADFEETLFVKCHVYFTPGNGKPLRFEP 215 (870)
Q Consensus 141 ~ClFSv~VhsieGLPaS-mnGlr-L~V~vrkketkdg-~~qT~PaRV~qG--~AeFeEtL~~rCsVY~srg~~~~~KyE~ 215 (870)
...+.|+|+.+++||+. .+|.. --|.+.-. ..++ ..+| +|... .-.|+|++.+.. .... ...
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~-~~~~~~~~T---~~~~~~~nP~wne~f~f~v--~~~~-------~~~ 84 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLL-PDKKKKFET---KVHRKTLNPVFNEQFTFKV--PYSE-------LAG 84 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEE-TCTTSCEEC---CCCCSCSSCEEEEEEEECC--CGGG-------CTT
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEE-cCCCceEeC---CcccCCCCCeeCceEEEEe--chHH-------hCc
Confidence 34678999999999963 23321 11222211 0111 2333 34333 568999988742 2111 011
Q ss_pred cceEEEEEecc--cccccccccccchhhHhHHhHHhhhcCcccccceeccccccc-----ccccEEEEEecEE
Q 046861 216 RPFWIYVFAID--AQELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK-----AKGGELVLKLGFQ 281 (870)
Q Consensus 216 r~F~l~~~~v~--a~eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk-----AkGa~L~v~~g~q 281 (870)
+...+.|.--+ ...--||.-.++|..|.. +.....| |.|... ..-|+|.+++.|.
T Consensus 85 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~--------~~~~~~w---~~L~~~~~~~~~~~G~i~l~l~~~ 146 (284)
T 2r83_A 85 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF--------GHVTEEW---RDLQSAEKEEQEKLGDICFSLRYV 146 (284)
T ss_dssp CEEEEEEEECCSSSCCCEEEEEEEEGGGCCC--------SSCEEEE---EECBCCSSCCCCCCCEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCceeEEEEEcchhccc--------CCcceeE---EEeeccccccccccccEEEEEEec
Confidence 22222222212 123458999999988754 2334455 566432 3457888877663
No 10
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=18.38 E-value=5.7e+02 Score=23.59 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=58.5
Q ss_pred cceEEEEEeeecCCCcC-CCCCe---eEEEEEeeecCCC---ceeecCcccccccccccceeeeeeEEeeeCCCCCcccc
Q 046861 141 SCLFSVEVVTVQGLPAS-MNGLR---LSVCVRKKETKDG---AVHTMPSRVSQGAADFEETLFVKCHVYFTPGNGKPLRF 213 (870)
Q Consensus 141 ~ClFSv~VhsieGLPaS-mnGlr---L~V~vrkketkdg---~~qT~PaRV~qG~AeFeEtL~~rCsVY~srg~~~~~Ky 213 (870)
...+.|.|+.+++||.. ++|.. +.|.+-. .+++ ..+|...+ -.-.-.|+|++.+.+. .. .
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~----~~-~----- 73 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYD--PMSGILTSVQTKTIK-KSLNPKWNEEILFRVL----PQ-R----- 73 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCCCCEEEEEEEEE--TTTEEEEEEECCCCS-SCSSCEEEEEEEEEEC----TT-T-----
T ss_pred cEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEEC--CCCCcccceeCceEC-CCCCCcccceEEEEEc----CC-C-----
Confidence 34578999999999863 33421 2222221 1221 12333332 2225679998876432 11 1
Q ss_pred cccceEEEEEecccc----cccccccccchhhHhHHhHHhhhcCcccccceeccccccc---c-cccEEEEEecEE
Q 046861 214 EPRPFWIYVFAIDAQ----ELNFGRHSVDLSQLIHESMDKSIQGARVRQWDISFNLSGK---A-KGGELVLKLGFQ 281 (870)
Q Consensus 214 E~r~F~l~~~~v~a~----eldlGkh~VDLs~Ll~~Sle~~~eg~~~~~W~tsF~LsGk---A-kGa~L~v~~g~q 281 (870)
+...|. +.|.. .--||.-.|+|..|.... ...+..-.-+| |+|..+ . ..|+|.|++.|.
T Consensus 74 --~~L~~~--V~d~d~~~~d~~lG~~~i~l~~l~~~~--~~~~~~~~~~w---~~L~~~~~~~~~~G~l~l~l~~~ 140 (176)
T 3m7f_B 74 --HRILFE--VFDENRLTRDDFLGQVDVPLYPLPTEN--PRMERPYTFKD---FVLHPRSHKSRVKGYLRLKMTYL 140 (176)
T ss_dssp --CEEEEE--EEECC----CEEEEEEEEESCSCCBC--------CCCCEE---EECBCSSTTCCCCSEEEEEEEEC
T ss_pred --CEEEEE--EEECCCCCCCcEEEEEEEEHHHccccC--CcccccccccE---EEccccCCCCccCEEEEEEEEEE
Confidence 222222 22322 234899999998887531 00000001134 555432 2 368999999884
Done!