Query 046862
Match_columns 275
No_of_seqs 178 out of 1261
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02202 carbonate dehydratase 100.0 1.8E-75 3.8E-80 530.3 24.5 258 8-269 6-268 (284)
2 COG3338 Cah Carbonic anhydrase 100.0 2.2E-70 4.8E-75 468.9 18.2 244 8-266 5-249 (250)
3 cd03124 alpha_CA_prokaryotic_l 100.0 3.6E-69 7.9E-74 473.1 21.1 214 44-264 1-215 (216)
4 cd03121 alpha_CARP_X_XI_like C 100.0 3.9E-69 8.4E-74 483.8 21.7 223 44-268 1-256 (256)
5 cd03119 alpha_CA_I_II_III_XIII 100.0 1.3E-68 2.9E-73 481.2 22.5 227 33-266 3-258 (259)
6 PF00194 Carb_anhydrase: Eukar 100.0 4.4E-67 9.5E-72 470.9 18.0 226 35-267 1-256 (256)
7 cd03126 alpha_CA_XII_XIV Carbo 100.0 2.1E-66 4.7E-71 464.2 21.1 215 44-266 1-248 (249)
8 cd03125 alpha_CA_VI Carbonic a 100.0 6.6E-66 1.4E-70 460.9 21.2 217 44-266 1-247 (249)
9 cd03122 alpha_CARP_receptor_li 100.0 8.8E-66 1.9E-70 461.3 21.0 217 44-264 1-252 (253)
10 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 4.7E-65 1E-69 455.3 21.1 217 44-266 1-247 (248)
11 cd03150 alpha_CA_IX Carbonic a 100.0 4.5E-65 9.8E-70 455.1 20.8 218 44-267 1-246 (247)
12 cd03149 alpha_CA_VII Carbonic 100.0 2.6E-64 5.7E-69 447.5 20.3 205 61-266 1-235 (236)
13 cd03118 alpha_CA_V Carbonic an 100.0 3.7E-64 8E-69 446.6 20.4 205 61-266 1-235 (236)
14 cd03120 alpha_CARP_VIII Carbon 100.0 7.6E-64 1.6E-68 449.5 21.9 214 46-266 2-255 (256)
15 PLN02179 carbonic anhydrase 100.0 9.8E-64 2.1E-68 442.1 20.0 204 25-232 27-230 (235)
16 KOG0382 Carbonic anhydrase [Ge 100.0 2E-63 4.3E-68 445.3 20.1 229 33-267 3-261 (262)
17 cd03117 alpha_CA_IV_XV_like Ca 100.0 2.9E-62 6.2E-67 434.0 19.4 201 61-265 1-234 (234)
18 cd00326 alpha_CA Carbonic anhy 100.0 2.4E-61 5.2E-66 426.5 19.8 203 61-264 1-227 (227)
19 PF15240 Pro-rich: Proline-ric 40.1 23 0.0005 30.3 2.3 26 8-38 1-26 (179)
20 PF09211 DUF1958: Domain of un 37.4 8.8 0.00019 27.3 -0.5 16 130-145 8-23 (65)
21 PF15284 PAGK: Phage-encoded v 33.0 24 0.00052 24.7 1.1 23 1-25 1-23 (61)
22 PF11466 Doppel: Prion-like pr 30.0 49 0.0011 19.7 1.9 18 10-27 9-26 (30)
23 PF13956 Ibs_toxin: Toxin Ibs, 27.7 30 0.00065 18.3 0.7 16 8-23 2-17 (19)
24 PF07172 GRP: Glycine rich pro 27.1 48 0.001 25.3 2.0 18 8-25 7-24 (95)
25 PF06594 HCBP_related: Haemoly 24.5 1.3E+02 0.0029 18.9 3.5 13 118-130 24-36 (43)
26 KOG0427 Ubiquitin conjugating 23.4 3.1E+02 0.0067 22.3 6.0 60 93-163 38-106 (161)
No 1
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=1.8e-75 Score=530.34 Aligned_cols=258 Identities=40% Similarity=0.755 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHhccccccccCCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccccc
Q 046862 8 VLFCCFFVVLLLLSGTAISQEVDDEIEFNYEEGGENGPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSY 87 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Y~~~~~~gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y 87 (275)
|+-.++++++++|+++++++ +++.+|+|. +.+||++|+.++++|..|++|++||||||.+..+...+.+.+|.++|
T Consensus 6 m~~~~~~~~~~~~~~~~~~~--~~~~~w~Y~--~~~GP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~ 81 (284)
T PLN02202 6 MIKLCFFAIALICIAPADAQ--TEGVVFGYK--GKNGPNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDY 81 (284)
T ss_pred HHHHHHHHHHHHHHHhhhcc--cCCCCcCCC--CCCChhhhhhcCcchhhccCCCccCCEeecCCccccCCCCCceeeec
Confidence 55444666666666653333 344689995 67899999999999999999999999999987665567778888888
Q ss_pred cCCccEEeecCeeeEEEeeCCCceEEEcCeEEEEeeeEecCCCCCccccccccceeeeeeecCCCceEEEEEEEecCCCC
Q 046862 88 KPSNATLKNRGHDMMLQWEGGAGTLRINGTEYVLQQCHWHSPSEHTINGQRFALEAHMVHVSQDGKIAVVGIMYKIGRPD 167 (275)
Q Consensus 88 ~~~~~~l~N~G~tv~v~~~~~~~~~~i~G~~Y~l~q~HfH~gSEHtidG~~~~~E~HiVh~~~~~~laVl~v~~~~~~~n 167 (275)
....+++.|+||++++.+.++.+.+.++|.+|.|.||||||||||+|||++|||||||||++.++++|||||||++|.+|
T Consensus 82 ~~~~~~l~N~Ghtv~v~~~~~~~~~~~~g~~Y~L~QfHFH~gSEH~idG~~yp~E~H~VH~~~~g~laVlgv~~~~g~~n 161 (284)
T PLN02202 82 YFTNATLVNHVCNVAMFFGEGAGDVIIDNKNYTLLQMHWHTPSEHHLHGVQYAAELHMVHQAKDGSFAVVASLFKIGTEE 161 (284)
T ss_pred cCCceEEEECCccEEEEEcCCCCeeEECCcEEEEEEEEecCCcccEECCeeCCeEEEEEEEcCCCCEEEEEEEEeccCCC
Confidence 76778999999999999965456788999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhcCC--CCc---eeEecccCCCCCCCCCcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHH
Q 046862 168 SFLESISDHLTQVAGS--NER---ETVAGVIDPRGIKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRV 242 (275)
Q Consensus 168 ~~l~~i~~~l~~i~~~--~~~---~~~~~~~~l~~L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~ 242 (275)
++++.+++.+..+... .+. ...+..|++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||+
T Consensus 162 ~~l~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~ 241 (284)
T PLN02202 162 PFLSQMKDKLVKLKEERFKGNHTAQVEVGKIDTRHIERKTRKYFRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRS 241 (284)
T ss_pred hHHHHHHHHHHHhhcccccCcccccccccccCHHHhCccccceEEEeccccCCCCCCceEEEEeCceEEcCHHHHHHHHH
Confidence 9999999988877431 111 11234678888888889999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEeCCC
Q 046862 243 AVHDESDTNARPQQPINLRIVKSYRPD 269 (275)
Q Consensus 243 l~~~~~~~N~Rp~Qpln~R~V~~~~~~ 269 (275)
+....+.+|+||+||||||.|+++.+.
T Consensus 242 ~~~~~l~~N~RpvQplngR~V~~~~~~ 268 (284)
T PLN02202 242 PLDKSFKNNSRPCQPLNGRRVEMFHDH 268 (284)
T ss_pred hhhcccCCCCCCCCCCCCCEEEEecCe
Confidence 876557899999999999999988653
No 2
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-70 Score=468.86 Aligned_cols=244 Identities=35% Similarity=0.655 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHhccccccccCCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccccc
Q 046862 8 VLFCCFFVVLLLLSGTAISQEVDDEIEFNYEEGGENGPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSY 87 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Y~~~~~~gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y 87 (275)
.++.+.+..+++++..+-++ +.+|+|. +..||++|+.|++++..|..|++||||||...... ....++.++|
T Consensus 5 ~l~~~~L~~~~~~~~ts~a~----~~~WgY~--g~~GPEhWg~L~~df~~C~~Gk~QSPIdI~~~~~~--~~~~~l~~~Y 76 (250)
T COG3338 5 FLIVLALGASLIGAETSPAA----EVHWGYT--GKEGPEHWGELSPDFEACAEGKNQSPIDIEHAVDV--QDKPPLQLNY 76 (250)
T ss_pred eeHHHHHhhhhhhhhccccc----ccccccc--CCcCchhhhhcCchhhHhhccccCCCccHHHheec--ccccchheee
Confidence 34445555555555554444 4789996 66799999999999999999999999999864332 2455678899
Q ss_pred cCCccEEeecCeeeEEEeeCCCceEEEcCeEEEEeeeEecCCCCCccccccccceeeeeeecCCCceEEEEEEEecCCCC
Q 046862 88 KPSNATLKNRGHDMMLQWEGGAGTLRINGTEYVLQQCHWHSPSEHTINGQRFALEAHMVHVSQDGKIAVVGIMYKIGRPD 167 (275)
Q Consensus 88 ~~~~~~l~N~G~tv~v~~~~~~~~~~i~G~~Y~l~q~HfH~gSEHtidG~~~~~E~HiVh~~~~~~laVl~v~~~~~~~n 167 (275)
.++..+|.|||||+++.+.++...+.++|+.|.|.|||||.||||.|||+.||||+||||.+.+|.|+|||||++.|..|
T Consensus 77 ~~s~~~i~nnghTiqv~~~~~~n~l~~~gk~y~L~qfHFH~PsEhlv~Gk~~pmEaHFVHkd~~g~L~Vl~v~~~~g~eN 156 (250)
T COG3338 77 QPSAVTIKNNGHTIQVNFEPGSNHLRYDGKTYQLVQFHFHAPSEHLVDGKSFPMEAHFVHKDAKGTLAVLAVLLQAGAEN 156 (250)
T ss_pred ccCceEEEecCcEEEEeccCCCcceeecCcEEEEEEEEecCchHHhhccccccceeeeeecCCCCCEEEEEEeeecCCCC
Confidence 88999999999999999987656889999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhcCCCCceeEe-cccCCCCCCCCCcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC
Q 046862 168 SFLESISDHLTQVAGSNERETVA-GVIDPRGIKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD 246 (275)
Q Consensus 168 ~~l~~i~~~l~~i~~~~~~~~~~-~~~~l~~L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~ 246 (275)
+.|..|.+.++.... .+..+ ..+|+..|+|....||+|+||||||||+|+|.|+|+++|+.+|++|+++|.+++.
T Consensus 157 ~~l~~l~~~fP~~~g---e~~~l~~~id~~~~lP~s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~~~- 232 (250)
T COG3338 157 PELAPLWEGFPQKPG---EEETLDETIDLNAFLPESRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKLMG- 232 (250)
T ss_pred cchhHHHHhcccccc---cccceeeccChhHhCccccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHHhC-
Confidence 999999998877643 22224 4599999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCCCCeEEEe
Q 046862 247 ESDTNARPQQPINLRIVKSY 266 (275)
Q Consensus 247 ~~~~N~Rp~Qpln~R~V~~~ 266 (275)
.|.||+||+|+|.|..+
T Consensus 233 ---~N~RPVQp~N~R~I~~~ 249 (250)
T COG3338 233 ---HNARPVQPLNDRLILEA 249 (250)
T ss_pred ---CCCCCCcCCCCcEEEec
Confidence 79999999999999754
No 3
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=3.6e-69 Score=473.07 Aligned_cols=214 Identities=46% Similarity=0.830 Sum_probs=194.1
Q ss_pred CCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccccccCCccEEeecCeeeEEEeeCCCceEEEcCeEEEEee
Q 046862 44 GPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSYKPSNATLKNRGHDMMLQWEGGAGTLRINGTEYVLQQ 123 (275)
Q Consensus 44 gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~~~~i~G~~Y~l~q 123 (275)
||++|+.++++|..|++|++||||||.+..+...+ +.+|.+.|.+..+++.|+||++++.+.++.+.++++|.+|.|.|
T Consensus 1 gp~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~-~~~l~~~~~~~~~~l~N~G~tv~~~~~~~~~~~~~~g~~Y~l~q 79 (216)
T cd03124 1 GPEHWGNLDPEFALCATGKNQSPIDITTKAVVSDK-LPPLNYNYKPTSATLVNNGHTIQVNFEGNGGTLTIDGETYQLLQ 79 (216)
T ss_pred CCcchhhCCcchhhhcCCCCCCCEeeccCceeecC-CCCceeeccCCceEEEECCceEEEEEcCCCCeEEECCcEEEEEE
Confidence 78999999999999999999999999987666544 78888888777889999999999999765568899999999999
Q ss_pred eEecCCCCCccccccccceeeeeeecCCCceEEEEEEEecCCCCchHHHHHHHHhhhcCCCCceeEeccc-CCCCCCCCC
Q 046862 124 CHWHSPSEHTINGQRFALEAHMVHVSQDGKIAVVGIMYKIGRPDSFLESISDHLTQVAGSNERETVAGVI-DPRGIKIGS 202 (275)
Q Consensus 124 ~HfH~gSEHtidG~~~~~E~HiVh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~-~l~~L~~~~ 202 (275)
|||||||||+|||++|||||||||++.++++|||||||+++..|++++++++.+..+.. +...+..+ ++..|+|+.
T Consensus 80 ~HfH~gSEH~idg~~y~~ElH~Vh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~~~~---~~~~~~~~~~~~~llp~~ 156 (216)
T cd03124 80 FHFHSPSEHLINGKRYPLEAHLVHKSKDGQLAVVAVLFEEGKENPFLKKILDNMPKKEG---TEVNLPAILDPNELLPES 156 (216)
T ss_pred EEecCCcccEeccccCCceeeEEEEcCCCCEEEEEEEEeecCCCHHHHHHHHhhhhhcC---CceeccCCCCHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999887643 33445556 888899988
Q ss_pred cceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccCCCCCCCCCCCCCCCCeEE
Q 046862 203 RKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHDESDTNARPQQPINLRIVK 264 (275)
Q Consensus 203 ~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~~~~~N~Rp~Qpln~R~V~ 264 (275)
.+||+|.||||||||+|+|+|+||++|+.||.+||++||+++ +.+|+||+||+|||.|+
T Consensus 157 ~~y~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~~~~---~~~N~Rp~Q~ln~R~v~ 215 (216)
T cd03124 157 RSYYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV---YPNNARPVQPLNGREVL 215 (216)
T ss_pred CceEEEeeecCCCCCcCceEEEecCCccccCHHHHHHHHHhc---cCCCCCCCCCCCCceee
Confidence 999999999999999999999999999999999999999975 45899999999999996
No 4
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=3.9e-69 Score=483.75 Aligned_cols=223 Identities=30% Similarity=0.507 Sum_probs=197.3
Q ss_pred CCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCcccccc-CCccEEeecCeeeEEEeeCCCceEEEcC----eE
Q 046862 44 GPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSYK-PSNATLKNRGHDMMLQWEGGAGTLRING----TE 118 (275)
Q Consensus 44 gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~-~~~~~l~N~G~tv~v~~~~~~~~~~i~G----~~ 118 (275)
||++|+.++++|..|++|++||||||.+..+...+.+.+|.+.|. +..++|+|+||||++.+.++ +.+.+.| .+
T Consensus 1 GP~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~~-~~~~i~gG~l~~~ 79 (256)
T cd03121 1 GPSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSFRPDKD-PVVNISGGPLSYR 79 (256)
T ss_pred CCCcccccCCchhhccCCCCcCCEeEeccceEECCCCCceeeccCCCCceEEEECCEEEEEEECCC-CceEEeCCCCCCc
Confidence 799999999999999999999999999988776777888988886 66789999999999998643 4566744 57
Q ss_pred EEEeeeEecC------CCCCccccccccceeeeeeecCC------------CceEEEEEEEecCC-CCchHHHHHHHHh-
Q 046862 119 YVLQQCHWHS------PSEHTINGQRFALEAHMVHVSQD------------GKIAVVGIMYKIGR-PDSFLESISDHLT- 178 (275)
Q Consensus 119 Y~l~q~HfH~------gSEHtidG~~~~~E~HiVh~~~~------------~~laVl~v~~~~~~-~n~~l~~i~~~l~- 178 (275)
|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|. +|+.++.|++.+.
T Consensus 80 Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~~i~~~l~~ 159 (256)
T cd03121 80 YRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDTI 159 (256)
T ss_pred EEEEEEEEecCCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHHHHHHhccc
Confidence 9999999998 79999999999999999999875 89999999999997 6999999999998
Q ss_pred -hhcCCCCceeEecccCCCCCCCCCcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCC
Q 046862 179 -QVAGSNERETVAGVIDPRGIKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD-------ESDT 250 (275)
Q Consensus 179 -~i~~~~~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~ 250 (275)
.+.. .++...+..|++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+
T Consensus 160 ~~i~~-~~~~~~~~~~~l~~Llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 238 (256)
T cd03121 160 TSIRY-KGDAYFLQDLSIELLLPETDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSP 238 (256)
T ss_pred ccccc-CCceeecCCCCHHHHCCCCCceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHHHHhhccCCcccCcCCC
Confidence 7765 455555667888889998899999999999999999999999999999999999999998742 1468
Q ss_pred CCCCCCCCCCCeEEEeCC
Q 046862 251 NARPQQPINLRIVKSYRP 268 (275)
Q Consensus 251 N~Rp~Qpln~R~V~~~~~ 268 (275)
|+||+||||||.|+++.+
T Consensus 239 N~Rp~Q~ln~R~V~~~~~ 256 (256)
T cd03121 239 NFRPVQPLNNRPVRTNIN 256 (256)
T ss_pred CCCCCCCCCCCeEEeeCC
Confidence 999999999999987653
No 5
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=1.3e-68 Score=481.18 Aligned_cols=227 Identities=32% Similarity=0.564 Sum_probs=197.1
Q ss_pred CCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccccccCC-ccEEeecCeeeEEEeeCCCce
Q 046862 33 IEFNYEEGGENGPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSYKPS-NATLKNRGHDMMLQWEGGAGT 111 (275)
Q Consensus 33 ~~w~Y~~~~~~gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~ 111 (275)
.+|+|. +..||++|+.+++ .|. |++||||||.+..+...+.+.+|.++|... ..+|+|+||||++.+.++.+.
T Consensus 3 ~~w~Y~--~~~gp~~W~~~~~---~~~-G~~QSPI~I~~~~~~~~~~l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~~~ 76 (259)
T cd03119 3 HHWGYD--SHNGPEHWHELFP---IAK-GDRQSPIDIKTKDAKHDPSLKPLSVSYDPATAKTILNNGHSFNVEFDDTDDR 76 (259)
T ss_pred cccCCC--CCCCcccccccCc---CCC-CCCCCCEeEccCeeeEcCCCCceecccccCcceEEEeCCeeEEEEeCCCCCc
Confidence 569995 5679999998654 465 999999999988877777888888888653 468999999999998754344
Q ss_pred EEEc-C---eEEEEeeeEecC------CCCCccccccccceeeeeeecCC-----------CceEEEEEEEecCCCCchH
Q 046862 112 LRIN-G---TEYVLQQCHWHS------PSEHTINGQRFALEAHMVHVSQD-----------GKIAVVGIMYKIGRPDSFL 170 (275)
Q Consensus 112 ~~i~-G---~~Y~l~q~HfH~------gSEHtidG~~~~~E~HiVh~~~~-----------~~laVl~v~~~~~~~n~~l 170 (275)
+.+. | .+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|++|+++
T Consensus 77 ~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlVH~n~~y~~~~~A~~~~~glaVvgvl~~~g~~n~~l 156 (259)
T cd03119 77 SVLRGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNSKYGSFGEAAKQPDGLAVVGVFLKVGEANPEL 156 (259)
T ss_pred ceEeCCCCCCcEEEEEEEEEeCCCCCCCccceecCccccceEEEEEecccCCCHHHHhcCCCCeEEEEEEEEecccchhH
Confidence 5554 3 599999999998 79999999999999999999864 7899999999999999999
Q ss_pred HHHHHHHhhhcCCCCceeEecccCCCCCCCCCcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----
Q 046862 171 ESISDHLTQVAGSNERETVAGVIDPRGIKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD---- 246 (275)
Q Consensus 171 ~~i~~~l~~i~~~~~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~---- 246 (275)
++|++.|..+.. .+....+..|++.+|+|+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 157 ~~i~~~l~~i~~-~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr~l~~~~~~~ 235 (259)
T cd03119 157 QKVLDALDSIKT-KGKQAPFTNFDPSCLLPASLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGE 235 (259)
T ss_pred HHHHHHHHHhcc-CCceeeecCCCHHHHcCCCCCeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHHHHhhccCCC
Confidence 999999999876 455555667899999998889999999999999999999999999999999999999998753
Q ss_pred ---CCCCCCCCCCCCCCCeEEEe
Q 046862 247 ---ESDTNARPQQPINLRIVKSY 266 (275)
Q Consensus 247 ---~~~~N~Rp~Qpln~R~V~~~ 266 (275)
.+.+|+||+||||||.|+.+
T Consensus 236 ~~~~~~~N~Rp~Qpln~R~V~~~ 258 (259)
T cd03119 236 PPCPMVDNWRPPQPLKGRKVRAS 258 (259)
T ss_pred ccccccCCCCCCCCCCCCEEEec
Confidence 24689999999999999875
No 6
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=4.4e-67 Score=470.87 Aligned_cols=226 Identities=36% Similarity=0.636 Sum_probs=183.4
Q ss_pred cccCCCCCCCCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccccccCC-ccEEeecCeeeEEEeeCCCceEE
Q 046862 35 FNYEEGGENGPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSYKPS-NATLKNRGHDMMLQWEGGAGTLR 113 (275)
Q Consensus 35 w~Y~~~~~~gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~~~ 113 (275)
|+|+ +..||++|+++++ .|. |++||||||.+..+...+.+.+|.+.|... ..++.|+||+++|.+++......
T Consensus 1 W~Y~--~~~gp~~W~~~~~---~~~-G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~~~~ 74 (256)
T PF00194_consen 1 WGYS--GNNGPENWPKLYP---CCG-GKRQSPININTSEAVYDPSLPPLKFSYYESSAGTLKNNGHTVQVNFDDTNNKPT 74 (256)
T ss_dssp CSSS--TTTSGGGHHHTSG---GGG-SSS-S-BEE-GGGSEEETTSEEEEEESTTSGEEEEEE-SSSEEEEECTSSSSSE
T ss_pred CcCC--CCCChhhhhhhCc---ccC-CCccCCEeeCcCccccccCCCCcEEeeccccceEEEecCceEEEEeCCCcccce
Confidence 9997 5689999998754 476 999999999998887778888888877543 35999999999999976433334
Q ss_pred EcC----eEEEEeeeEecC------CCCCccccccccceeeeeeec------------CCCceEEEEEEEecCCCCchHH
Q 046862 114 ING----TEYVLQQCHWHS------PSEHTINGQRFALEAHMVHVS------------QDGKIAVVGIMYKIGRPDSFLE 171 (275)
Q Consensus 114 i~G----~~Y~l~q~HfH~------gSEHtidG~~~~~E~HiVh~~------------~~~~laVl~v~~~~~~~n~~l~ 171 (275)
+.| .+|+|.|||||| ||||+|||++|||||||||++ .++++||||||+++++.|+.++
T Consensus 75 i~g~~l~~~Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~~~n~~l~ 154 (256)
T PF00194_consen 75 ISGGPLPGEYRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIGESNPFLQ 154 (256)
T ss_dssp EEETTESSEEEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEESS--GHHH
T ss_pred ecCCCccceEEEEEEEEecccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeeccccccccc
Confidence 433 689999999998 599999999999999999999 5689999999999999999999
Q ss_pred HHHHHHhhhcCCCCceeEecccCCCCCCCCCcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-----
Q 046862 172 SISDHLTQVAGSNERETVAGVIDPRGIKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD----- 246 (275)
Q Consensus 172 ~i~~~l~~i~~~~~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----- 246 (275)
.|++.|+.+.. .++...+..|++.+|+|....||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 155 ~i~~~l~~i~~-~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~ 233 (256)
T PF00194_consen 155 PILDALPNIPY-PGSSTPIQSFSLSDLLPSTRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEE 233 (256)
T ss_dssp HHHHHGGGGTS-TTEEEEEESBBGGGGSCSSSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSS
T ss_pred hhhhhhhhccc-cccccccccccccccCCCCCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCc
Confidence 99999999876 566677788999999999999999999999999999999999999999999999999998743
Q ss_pred --CCCCCCCCCCCCCCCeEEEeC
Q 046862 247 --ESDTNARPQQPINLRIVKSYR 267 (275)
Q Consensus 247 --~~~~N~Rp~Qpln~R~V~~~~ 267 (275)
.+.+|+||+||||||.|+.+.
T Consensus 234 ~~~~~~N~Rp~QpLn~R~V~~sf 256 (256)
T PF00194_consen 234 FAPLVNNFRPVQPLNGRKVYASF 256 (256)
T ss_dssp ECBSSS-S---B--TTS-EEESS
T ss_pred cccCCCCcCCCCCCCCcEEEeCC
Confidence 246899999999999999763
No 7
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=2.1e-66 Score=464.25 Aligned_cols=215 Identities=36% Similarity=0.571 Sum_probs=187.1
Q ss_pred CCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccc-cccC---CccEEeecCeeeEEEeeCCCceEEEcC--e
Q 046862 44 GPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKR-SYKP---SNATLKNRGHDMMLQWEGGAGTLRING--T 117 (275)
Q Consensus 44 gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~---~~~~l~N~G~tv~v~~~~~~~~~~i~G--~ 117 (275)
||++|+.. |+.|+ |++||||||.+..+..++.+.+|.+ +|.. ..++|.|+||+|+|.+.+ .+.++| .
T Consensus 1 gp~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~~---~~~~~~l~~ 73 (249)
T cd03126 1 GENSWPKK---YPFCG-GVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPP---TMHIGGLPF 73 (249)
T ss_pred CCCccccc---CCCCC-CCccCCEeEecCceeECCCCCccEEeccccCCCCceEEEECCEeEEEEEcC---CceecCCCc
Confidence 68899875 45798 9999999999888777788888888 5753 257999999999999863 345666 7
Q ss_pred EEEEeeeEecC-------CCCCccccccccceeeeeeecCC------------CceEEEEEEEecCCCCchHHHHHHHHh
Q 046862 118 EYVLQQCHWHS-------PSEHTINGQRFALEAHMVHVSQD------------GKIAVVGIMYKIGRPDSFLESISDHLT 178 (275)
Q Consensus 118 ~Y~l~q~HfH~-------gSEHtidG~~~~~E~HiVh~~~~------------~~laVl~v~~~~~~~n~~l~~i~~~l~ 178 (275)
+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||+++..|+.++.|++.|.
T Consensus 74 ~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~n~~~~~i~~~l~ 153 (249)
T cd03126 74 KYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGPFNPSYEKIFSHLH 153 (249)
T ss_pred cEEEEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecCCChhHHHHHHHhh
Confidence 99999999998 58999999999999999999975 899999999999999999999999999
Q ss_pred hhcCCCCceeEecccCCCCCCCCC-cceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCC
Q 046862 179 QVAGSNERETVAGVIDPRGIKIGS-RKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD-------ESDT 250 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~ 250 (275)
.+.. .+....+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+
T Consensus 154 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~~~~~~~~~~~~~~~~ 232 (249)
T cd03126 154 EVKY-KDQKVSVPGFNVQELLPKRLDEYYRYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMVN 232 (249)
T ss_pred hccc-CCceeEcCCCCHHHhCccccCCeEEEeccCcCCCCcCceEEEEeCCceecCHHHHHHHHHHhhhcccCccCcccC
Confidence 8875 4455555678899988865 57999999999999999999999999999999999999997632 2568
Q ss_pred CCCCCCCCCCCeEEEe
Q 046862 251 NARPQQPINLRIVKSY 266 (275)
Q Consensus 251 N~Rp~Qpln~R~V~~~ 266 (275)
|+||+||||||.|+++
T Consensus 233 N~Rp~QplngR~V~~~ 248 (249)
T cd03126 233 NYRQVQPFNERLVFAS 248 (249)
T ss_pred CCCCCCCCCCCEEEec
Confidence 9999999999999875
No 8
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=6.6e-66 Score=460.95 Aligned_cols=217 Identities=32% Similarity=0.593 Sum_probs=186.0
Q ss_pred CCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccc-ccc--CCccEEeecCeeeEEEeeCCCceEEE-cCeEE
Q 046862 44 GPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKR-SYK--PSNATLKNRGHDMMLQWEGGAGTLRI-NGTEY 119 (275)
Q Consensus 44 gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~i-~G~~Y 119 (275)
+|++|+.. |..|+ |++||||||.+..+...+.+.+|.+ +|. +..++|.|+||||+|.+.++. .+.. .|.+|
T Consensus 1 ~~~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~~~~~~Y 75 (249)
T cd03125 1 DESHWPEK---YPACG-GKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLPPTM-SITTGDGTVY 75 (249)
T ss_pred CCCccccc---CcCCC-CCCCCCEeEccCceeECCCCCceEeecccCCCccEEEEECCEEEEEEeCCCc-ccccCCCCCE
Confidence 36789864 56897 9999999999988776778888887 675 445799999999999986432 3322 46899
Q ss_pred EEeeeEecC--------CCCCccccccccceeeeeeecCC-----------CceEEEEEEEecCC--CCchHHHHHHHHh
Q 046862 120 VLQQCHWHS--------PSEHTINGQRFALEAHMVHVSQD-----------GKIAVVGIMYKIGR--PDSFLESISDHLT 178 (275)
Q Consensus 120 ~l~q~HfH~--------gSEHtidG~~~~~E~HiVh~~~~-----------~~laVl~v~~~~~~--~n~~l~~i~~~l~ 178 (275)
+|.|||||| ||||+|||++|||||||||++.+ +|+|||||||+++. +|+.++.|++.|.
T Consensus 76 ~l~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~~y~~~~~a~~~~~glaVl~v~~~~~~~~~n~~~~~i~~~l~ 155 (249)
T cd03125 76 TAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSKYKSYEEAKDKPDGLAVLAFLYKVGHYAENTYYSDFISKLA 155 (249)
T ss_pred EEEEEEEEecCCCCCCCCccceeccccCCceEEEEEecCCCCCHHHHhcCCCceEEEEEEEEeccCcCCccHHHHHHHHh
Confidence 999999997 79999999999999999999874 89999999999997 8999999999999
Q ss_pred hhcCCCCceeEecccCCCCCCCCC-cceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----CCCCCCC
Q 046862 179 QVAGSNERETVAGVIDPRGIKIGS-RKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD----ESDTNAR 253 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----~~~~N~R 253 (275)
.+.. .++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+|
T Consensus 156 ~i~~-~~~~~~~~~~~~~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~~~~~~~~~~l~~N~R 234 (249)
T cd03125 156 KIKY-AGQTTTLTSLDVRDMLPENLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLENTLMDHHNKTIRNDYR 234 (249)
T ss_pred hccc-CCceeecCCCCHHHhCCcCcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHHHHhcccCCCcccCCCC
Confidence 8875 4555556678888888865 67999999999999999999999999999999999999986532 2568999
Q ss_pred CCCCCCCCeEEEe
Q 046862 254 PQQPINLRIVKSY 266 (275)
Q Consensus 254 p~Qpln~R~V~~~ 266 (275)
|+||||||.|+.+
T Consensus 235 p~Qpln~R~V~~~ 247 (249)
T cd03125 235 RTQPLNHRVVEAN 247 (249)
T ss_pred CCCCCCCCeEEee
Confidence 9999999999865
No 9
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=8.8e-66 Score=461.27 Aligned_cols=217 Identities=30% Similarity=0.566 Sum_probs=185.8
Q ss_pred CCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccccccC---CccEEeecCeeeEEEeeCCCceEEEcC----
Q 046862 44 GPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSYKP---SNATLKNRGHDMMLQWEGGAGTLRING---- 116 (275)
Q Consensus 44 gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~---~~~~l~N~G~tv~v~~~~~~~~~~i~G---- 116 (275)
||++|+.. |..|++|++||||||.+..+.....+++|.+.|.. ..++|.|+||||+|.+.++.+.++++|
T Consensus 1 gp~~W~~~---~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~~i~gg~l~ 77 (253)
T cd03122 1 NPKHWAKK---YPACGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTVILRLEGNSSDPFVSGGPLL 77 (253)
T ss_pred Cccccccc---CCcCCCCCCCCCEeEeecceeccCCCCCeEEeccCCCCCceEEEECCeEEEEEecCCCCceEEeCCCCC
Confidence 68999874 56799999999999988543322337788876632 568999999999999875445677777
Q ss_pred eEEEEeeeEecC------CCCCccccccccceeeeeeecCC-----------CceEEEEEEEecC-CCCchHHHHHHHHh
Q 046862 117 TEYVLQQCHWHS------PSEHTINGQRFALEAHMVHVSQD-----------GKIAVVGIMYKIG-RPDSFLESISDHLT 178 (275)
Q Consensus 117 ~~Y~l~q~HfH~------gSEHtidG~~~~~E~HiVh~~~~-----------~~laVl~v~~~~~-~~n~~l~~i~~~l~ 178 (275)
.+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||+++ .+|+++++|++.+.
T Consensus 78 ~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~~~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~l~ 157 (253)
T cd03122 78 GRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNTDFFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEGLR 157 (253)
T ss_pred CcEEEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcCCCCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHHHH
Confidence 579999999997 68999999999999999999875 6999999999999 58999999999999
Q ss_pred hhcCCCCceeEecccCCCCCCCC-CcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC---------CC
Q 046862 179 QVAGSNERETVAGVIDPRGIKIG-SRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD---------ES 248 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~-~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~---------~~ 248 (275)
.+.. +++...+..|++.+|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+
T Consensus 158 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 236 (253)
T cd03122 158 NVSR-PGKEVELPPFPLSDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDYL 236 (253)
T ss_pred hcCC-CCcEEEcCCCCHHHHhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHHHHhcccccccccCccc
Confidence 8876 455555667888888885 478999999999999999999999999999999999999998742 25
Q ss_pred CCCCCCCCCCCCCeEE
Q 046862 249 DTNARPQQPINLRIVK 264 (275)
Q Consensus 249 ~~N~Rp~Qpln~R~V~ 264 (275)
.+|+||+||||||.|+
T Consensus 237 ~~N~Rp~Qpln~R~V~ 252 (253)
T cd03122 237 PNNGRPQQPLGSRTVF 252 (253)
T ss_pred cCCCcCCCCCCCCEec
Confidence 6899999999999985
No 10
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=4.7e-65 Score=455.34 Aligned_cols=217 Identities=38% Similarity=0.606 Sum_probs=184.8
Q ss_pred CCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccc-cccC--C-ccEEeecCeeeEEEeeCCCceEEE-cCeE
Q 046862 44 GPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKR-SYKP--S-NATLKNRGHDMMLQWEGGAGTLRI-NGTE 118 (275)
Q Consensus 44 gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~--~-~~~l~N~G~tv~v~~~~~~~~~~i-~G~~ 118 (275)
+|++|+.++ +.|+ |++||||||.+..+..++.+.+|.+ .|.. . .++|.|+||||+|.+.++ ..+.. .+.+
T Consensus 1 ~p~~W~~~~---~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~-~~~~gg~~~~ 75 (248)
T cd03123 1 GEDHWPKKY---PACG-GKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPT-MHIRGGPGTE 75 (248)
T ss_pred CCCcccccC---cCCC-CCCCCCEeEeccceeecCCCCcceecccccCCCCceEEEECCeeEEEEeCCC-ccccCCCCCC
Confidence 588999754 5797 9999999999988776777888887 5743 2 579999999999998642 12221 1269
Q ss_pred EEEeeeEecC-------CCCCccccccccceeeeeeecC------------CCceEEEEEEEecC-CCCchHHHHHHHHh
Q 046862 119 YVLQQCHWHS-------PSEHTINGQRFALEAHMVHVSQ------------DGKIAVVGIMYKIG-RPDSFLESISDHLT 178 (275)
Q Consensus 119 Y~l~q~HfH~-------gSEHtidG~~~~~E~HiVh~~~------------~~~laVl~v~~~~~-~~n~~l~~i~~~l~ 178 (275)
|+|.|||||| ||||+|||++|||||||||++. ++++|||||||+++ ..|+.++.|++.|.
T Consensus 76 Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n~~~~~i~~~l~ 155 (248)
T cd03123 76 YTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPENTYYEKIISHLH 155 (248)
T ss_pred EEEEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCCccHHHHHHHHH
Confidence 9999999998 7999999999999999999997 48999999999999 68999999999999
Q ss_pred hhcCCCCceeEecccCCCCCCCCC-cceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----CCCCCCC
Q 046862 179 QVAGSNERETVAGVIDPRGIKIGS-RKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD----ESDTNAR 253 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----~~~~N~R 253 (275)
.+.. .++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+|
T Consensus 156 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr~~l~~~~~~~~~~N~R 234 (248)
T cd03123 156 EIKY-KGQETTVPGFNVRELLPEDLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTHNKTLQNNYR 234 (248)
T ss_pred hhCc-CCcEEecCCCCHHHhcCCCcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHHHHhhccCCCcccCCCC
Confidence 8876 4555556678898888865 57999999999999999999999999999999999999986532 3579999
Q ss_pred CCCCCCCCeEEEe
Q 046862 254 PQQPINLRIVKSY 266 (275)
Q Consensus 254 p~Qpln~R~V~~~ 266 (275)
|+||||||.|+.+
T Consensus 235 p~Qpln~R~V~~~ 247 (248)
T cd03123 235 ATQPLNGRVVEAS 247 (248)
T ss_pred CCCCCCCCEEEec
Confidence 9999999999875
No 11
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=4.5e-65 Score=455.07 Aligned_cols=218 Identities=33% Similarity=0.583 Sum_probs=185.3
Q ss_pred CCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccc-ccc--C-CccEEeecCeeeEEEeeCCCceEEEc-CeE
Q 046862 44 GPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKR-SYK--P-SNATLKNRGHDMMLQWEGGAGTLRIN-GTE 118 (275)
Q Consensus 44 gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~-~~~~l~N~G~tv~v~~~~~~~~~~i~-G~~ 118 (275)
||++|+.+++ .|+ |++||||||.+..+...+.+++|.+ .|. . ..++|+|+||||+|.+.++. .+..+ |.+
T Consensus 1 ~~~~W~~~~~---~c~-G~~QSPIdI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~g~~~~ 75 (247)
T cd03150 1 GQPPWPSVSP---ACA-GRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSGL-RMALGPGQE 75 (247)
T ss_pred CCCcccccCC---CCC-CCCcCCEeeccCceeECCCCCCceeeccccCCCCceEEEECCEEEEEEEeccc-ccccCCCCc
Confidence 5778998754 698 9999999999888776777888876 564 2 25799999999999986432 33322 589
Q ss_pred EEEeeeEecC------CCCCccccccccceeeeeeecC-----------CCceEEEEEEEecCC-CCchHHHHHHHHhhh
Q 046862 119 YVLQQCHWHS------PSEHTINGQRFALEAHMVHVSQ-----------DGKIAVVGIMYKIGR-PDSFLESISDHLTQV 180 (275)
Q Consensus 119 Y~l~q~HfH~------gSEHtidG~~~~~E~HiVh~~~-----------~~~laVl~v~~~~~~-~n~~l~~i~~~l~~i 180 (275)
|+|.|||||| ||||+|||++|||||||||++. ++++|||||||+++. +|+.++.|++.+..+
T Consensus 76 Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~~y~~~~~A~~~~~glaVl~v~~~~g~~~n~~l~~i~~~l~~i 155 (247)
T cd03150 76 YRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTAFANLDEALGRPGGLAVLAAFLAEGLHENSAYEQLLSRLSEI 155 (247)
T ss_pred EEEEEEEEEeCCCCCCCcceeeCCcccchhhheeeecccCCCHHHHhcCCCCcEEEEEEEEecCCCCHHHHHHHHHHHhh
Confidence 9999999999 7999999999999999999986 589999999999995 899999999999988
Q ss_pred cCCCCceeEecccCCCCCCCCC-cceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----CCCCCCCCC
Q 046862 181 AGSNERETVAGVIDPRGIKIGS-RKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD----ESDTNARPQ 255 (275)
Q Consensus 181 ~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----~~~~N~Rp~ 255 (275)
.. .++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+
T Consensus 156 ~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~~l~~~~~~~l~~N~Rp~ 234 (247)
T cd03150 156 SE-EESETVVPGLDVSALLPSDLSRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGPHDSRLQLNFRAT 234 (247)
T ss_pred CC-CCceeecCCCCHHHHcCcccCCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 76 4455556678888888865 57999999999999999999999999999999999999986532 256899999
Q ss_pred CCCCCCeEEEeC
Q 046862 256 QPINLRIVKSYR 267 (275)
Q Consensus 256 Qpln~R~V~~~~ 267 (275)
||||||.|+.+.
T Consensus 235 Qpln~R~V~~~~ 246 (247)
T cd03150 235 QPLNGRKIEASF 246 (247)
T ss_pred CCCCCCeEEeeC
Confidence 999999998753
No 12
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=2.6e-64 Score=447.49 Aligned_cols=205 Identities=31% Similarity=0.523 Sum_probs=179.6
Q ss_pred CCCCCCceecCCceeeeccCCCccccccC-CccEEeecCeeeEEEeeCCCceEEEcC----eEEEEeeeEecC------C
Q 046862 61 GRMQSPIDLLNERVQVVSHLGRLKRSYKP-SNATLKNRGHDMMLQWEGGAGTLRING----TEYVLQQCHWHS------P 129 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~i~G----~~Y~l~q~HfH~------g 129 (275)
|++||||||.+..+..++.+.+|.++|.. ..+++.|+||||++.+.++.+.+.+.| .+|+|.|||||| |
T Consensus 1 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHGSG 80 (236)
T ss_pred CCCCCCeeEccCceEECCCCCceEeecCCCcceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCCCC
Confidence 78999999999888777788888888864 367999999999999865334455554 689999999998 7
Q ss_pred CCCccccccccceeeeeeecCC------------CceEEEEEEEecCCCCchHHHHHHHHhhhcCCCCceeEecccCCCC
Q 046862 130 SEHTINGQRFALEAHMVHVSQD------------GKIAVVGIMYKIGRPDSFLESISDHLTQVAGSNERETVAGVIDPRG 197 (275)
Q Consensus 130 SEHtidG~~~~~E~HiVh~~~~------------~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~ 197 (275)
|||+|||++|||||||||++.+ +|+|||||||++|..|+.++.|++.|..+.. .+....+..|++..
T Consensus 81 SEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~~~ 159 (236)
T cd03149 81 SEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGDEHPGLNRLTDALYMVRF-KGTKAQFLDFNPKC 159 (236)
T ss_pred CceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecCCCccHHHHHHHhhhccc-CCcceeeccCCHHH
Confidence 9999999999999999999864 8999999999999999999999999998875 34445566788889
Q ss_pred CCCCCcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCCCCCCCCCCCCCeEEEe
Q 046862 198 IKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD-------ESDTNARPQQPINLRIVKSY 266 (275)
Q Consensus 198 L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~N~Rp~Qpln~R~V~~~ 266 (275)
|+|+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+||||||.|+.+
T Consensus 160 llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~~ 235 (236)
T cd03149 160 LLPKSLDYWTYPGSLTTPPLNESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFRPPQPLKGRTVRAS 235 (236)
T ss_pred HCCCCCCeEEecccCcCCCCCCceEEEEeCceeeCCHHHHHHHHHhhhhccCcccccccCCCcCCCCCCCCEEEec
Confidence 9998889999999999999999999999999999999999999998632 24689999999999999865
No 13
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=3.7e-64 Score=446.57 Aligned_cols=205 Identities=31% Similarity=0.494 Sum_probs=179.4
Q ss_pred CCCCCCceecCCceeeeccCCCccccccCC-ccEEeecCeeeEEEeeCCCc-eEEEcC---eEEEEeeeEecC------C
Q 046862 61 GRMQSPIDLLNERVQVVSHLGRLKRSYKPS-NATLKNRGHDMMLQWEGGAG-TLRING---TEYVLQQCHWHS------P 129 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~-~~~i~G---~~Y~l~q~HfH~------g 129 (275)
|++||||||.+..+..++.+.+|.++|... .++|.|+||||++.+.++.. ....+| .+|+|.|||||| |
T Consensus 1 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNEWG 80 (236)
T ss_pred CCcCCCeeEecCceeECCCCCceEEecCCCCceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCCCC
Confidence 789999999988777677888899888644 46999999999999865332 334455 599999999999 8
Q ss_pred CCCccccccccceeeeeeecC------------CCceEEEEEEEecCCCCchHHHHHHHHhhhcCCCCceeEecccCCCC
Q 046862 130 SEHTINGQRFALEAHMVHVSQ------------DGKIAVVGIMYKIGRPDSFLESISDHLTQVAGSNERETVAGVIDPRG 197 (275)
Q Consensus 130 SEHtidG~~~~~E~HiVh~~~------------~~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~ 197 (275)
|||+|||++|||||||||++. ++++|||||||++|..|+.++.|++.+..+.. .+....+..|++..
T Consensus 81 SEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~~~ 159 (236)
T cd03118 81 SEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGAHHEGLQKLVDALPEVRH-KDTVVEFNPFDPSC 159 (236)
T ss_pred CceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCcCccHHHHHHHHHhcCc-CCceeeecCCCHHH
Confidence 999999999999999999987 48999999999999999999999999999875 34455556788999
Q ss_pred CCCCCcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCCCCCCCCCCCCCeEEEe
Q 046862 198 IKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD-------ESDTNARPQQPINLRIVKSY 266 (275)
Q Consensus 198 L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~N~Rp~Qpln~R~V~~~ 266 (275)
|+|+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+||||||.|+.+
T Consensus 160 llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Qpln~R~V~~~ 235 (236)
T cd03118 160 LLPACRDYWTYPGSLTTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNFRPLQPLMNRKVRSS 235 (236)
T ss_pred HcccCCCEEEecCcccCCCCcCceEEEEeCccccCCHHHHHHHHHHhhhccCCccccccCCCCCCCCCCCCEEEec
Confidence 9998889999999999999999999999999999999999999998742 14689999999999999875
No 14
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=7.6e-64 Score=449.47 Aligned_cols=214 Identities=28% Similarity=0.516 Sum_probs=182.6
Q ss_pred CCccccCcCcccCCCCCCCCCceecCCceeeeccCC--CccccccCC-ccEEeecCeeeEEEeeCCCceEEEc-----Ce
Q 046862 46 SKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLG--RLKRSYKPS-NATLKNRGHDMMLQWEGGAGTLRIN-----GT 117 (275)
Q Consensus 46 ~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~--~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~~~i~-----G~ 117 (275)
++|+.+++ .|. |++||||||.+..+...+.+. +|.++|.+. .++|+|+|||++|.+.++ ....+ |.
T Consensus 2 ~~W~~~~~---~c~-G~~QSPInI~~~~~~~~~~~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~--~~~~gg~l~~~~ 75 (256)
T cd03120 2 VEWGLLFP---EAN-GEYQSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGHTIQIILKSK--SVLSGGPLPQGH 75 (256)
T ss_pred CcccccCC---CCC-CCcCCCccCccCceEECCCCCcccceeccCCCCceEEEECCeEEEEEeCCC--ceeecCCCCCCc
Confidence 47988765 597 999999999998777666766 466677543 579999999999998642 22232 46
Q ss_pred EEEEeeeEecC------CCCCccccccccceeeeeeecCC------------CceEEEEEEEecCCCCchHHHHHHHHhh
Q 046862 118 EYVLQQCHWHS------PSEHTINGQRFALEAHMVHVSQD------------GKIAVVGIMYKIGRPDSFLESISDHLTQ 179 (275)
Q Consensus 118 ~Y~l~q~HfH~------gSEHtidG~~~~~E~HiVh~~~~------------~~laVl~v~~~~~~~n~~l~~i~~~l~~ 179 (275)
+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|..|+.++.|++.|..
T Consensus 76 ~Y~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~ 155 (256)
T cd03120 76 EFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGKEHVGLKAVTEILQD 155 (256)
T ss_pred eEEEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecCCCHhHHHHHHHhHh
Confidence 89999999998 59999999999999999999974 6999999999999999999999999999
Q ss_pred hcCCCCceeEecccCCCCCCCC--CcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-----------
Q 046862 180 VAGSNERETVAGVIDPRGIKIG--SRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD----------- 246 (275)
Q Consensus 180 i~~~~~~~~~~~~~~l~~L~~~--~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----------- 246 (275)
+.. .++...+..|++.+|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 156 i~~-~~~~~~~~~~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~l~~~~~~~~~~~~~~ 234 (256)
T cd03120 156 IQY-KGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGCD 234 (256)
T ss_pred hcc-CCceeeecCCCHHHHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCeeecCHHHHHHHHHHHhcccccccccccc
Confidence 876 455555667888888886 478999999999999999999999999999999999999998742
Q ss_pred -CCCCCCCCCCCCCCCeEEEe
Q 046862 247 -ESDTNARPQQPINLRIVKSY 266 (275)
Q Consensus 247 -~~~~N~Rp~Qpln~R~V~~~ 266 (275)
.+.+|+||+||||||.|+.+
T Consensus 235 ~~l~~N~Rp~Qpln~R~v~~~ 255 (256)
T cd03120 235 GLLGDNFRPTQPLSDRVIRAA 255 (256)
T ss_pred ccccCCCCCCCCCCCCEEEec
Confidence 14689999999999999864
No 15
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=9.8e-64 Score=442.05 Aligned_cols=204 Identities=49% Similarity=1.000 Sum_probs=178.4
Q ss_pred cccccCCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceecCCceeeeccCCCccccccCCccEEeecCeeeEEE
Q 046862 25 ISQEVDDEIEFNYEEGGENGPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVSHLGRLKRSYKPSNATLKNRGHDMMLQ 104 (275)
Q Consensus 25 ~~~~~~~~~~w~Y~~~~~~gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~ 104 (275)
.|++.+.+.+|+|..++.+||++|+++.++|..|++|++||||||.+..+.... ..+|.+.|.+..+++.|+|||+++.
T Consensus 27 ~~~~~~~~~~w~Y~~~~~~Gp~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~-~~~l~~~y~~~~~~i~N~Ghtv~v~ 105 (235)
T PLN02179 27 YAREIGNKPLFTYKQKTEKGPAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIH-DQALSRHYKPAPAVIQSRGHDVMVS 105 (235)
T ss_pred hcccccCCCCCCcCCCCCCCchhhhhcChhhhhccCCCcCCCEEeecccccccc-CCCcccccCCccEEEEECCeEEEEE
Confidence 456678889999976678899999999999999999999999999986543211 1346778877778999999999999
Q ss_pred eeCCCceEEEcCeEEEEeeeEecCCCCCccccccccceeeeeeecCCCceEEEEEEEecCCCCchHHHHHHHHhhhcCCC
Q 046862 105 WEGGAGTLRINGTEYVLQQCHWHSPSEHTINGQRFALEAHMVHVSQDGKIAVVGIMYKIGRPDSFLESISDHLTQVAGSN 184 (275)
Q Consensus 105 ~~~~~~~~~i~G~~Y~l~q~HfH~gSEHtidG~~~~~E~HiVh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~ 184 (275)
+.++.+.+.++|.+|+|.||||||||||+|||++|||||||||+++++++|||||||++|++|++++++++.+..+..
T Consensus 106 ~~~~~~~~~i~g~~Y~L~QfHFH~gSEH~InG~~yp~E~H~VH~n~~g~laVlgvl~~~g~~n~~l~~il~~l~~~~~-- 183 (235)
T PLN02179 106 WKGDAGKITIHQTDYKLVQCHWHSPSEHTINGTSYDLELHMVHTSASGKTAVVGVLYKLGEPDEFLTKLLNGIKGVGK-- 183 (235)
T ss_pred ecCCCCeeEecCcEEEEEEEEecCCcceEecccccCeeEEEEEEcCCCCeEEEEEEEecCCCCHHHHHHHHhhhcccC--
Confidence 876556889999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred CceeEecccCCCCCCCCCcceEEEeecccCCCCccceEEEEeceeecc
Q 046862 185 ERETVAGVIDPRGIKIGSRKYYRYIGSLTIPPCTENVLWTIVRKVRTV 232 (275)
Q Consensus 185 ~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~I 232 (275)
+...+..+++.+|+|+..+||+|.||||||||+|+|+|+||++|+-+
T Consensus 184 -~~~~~~~l~~~~llp~~~~yy~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 184 -KEINLGIVDPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred -cceeecccCHHHhCcCCCCEEEEecccCCCCCCCceEEEEecCcEEe
Confidence 23345668888888888899999999999999999999999999854
No 16
>KOG0382 consensus Carbonic anhydrase [General function prediction only]
Probab=100.00 E-value=2e-63 Score=445.28 Aligned_cols=229 Identities=39% Similarity=0.642 Sum_probs=195.6
Q ss_pred CCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceecCCceeeec-cCCCccccccCC-ccEEeecCeeeEEEeeCCCc
Q 046862 33 IEFNYEEGGENGPSKWGQLHSEWSACKNGRMQSPIDLLNERVQVVS-HLGRLKRSYKPS-NATLKNRGHDMMLQWEGGAG 110 (275)
Q Consensus 33 ~~w~Y~~~~~~gP~~W~~~~~~~~~C~~G~~QSPInI~~~~~~~~~-~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~ 110 (275)
..|.|. ....||..|+.+++. |+ |++||||||....+.+++ .+.++.++|... ...+.|||++..|.+....+
T Consensus 3 ~~~~~~-~~~~gp~~W~~~~~~---~~-g~~QSPIdi~~~~~~~~~~~l~~~~~~~~~~~~~~~~nng~~~~v~~~~~~~ 77 (262)
T KOG0382|consen 3 EFWYYE-KGNKGPEHWGKLYPE---WK-GKRQSPIDIKRSQIVYDPDPLKPLRLSYEYKPCNAVLNNGHSRGVDIMLKGG 77 (262)
T ss_pred ceeEEe-ccccCCccccccCcC---cC-CCccCCccCccceeeecCccccceeeecccCcceEEEeCCceEEEEeecCCC
Confidence 346664 456699999997764 66 999999999999998888 666666666443 46789999766666554333
Q ss_pred eEEEcC----e-EEEEeeeEecC------CCCCccccccccceeeeeeec-----------CCCceEEEEEEEecCC-CC
Q 046862 111 TLRING----T-EYVLQQCHWHS------PSEHTINGQRFALEAHMVHVS-----------QDGKIAVVGIMYKIGR-PD 167 (275)
Q Consensus 111 ~~~i~G----~-~Y~l~q~HfH~------gSEHtidG~~~~~E~HiVh~~-----------~~~~laVl~v~~~~~~-~n 167 (275)
.+.+.| . .|++.|+|||| ||||||||++|+||||+||+| .++|+|||||||++|. .|
T Consensus 78 ~~~i~gg~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n~~y~~~~eA~~~p~GlAVv~vf~k~g~~~n 157 (262)
T KOG0382|consen 78 KPEITGGPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWNTKYENFKEALSKPDGLAVVGVFLKIGKEEN 157 (262)
T ss_pred CcceecCCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEeccccCCHHHHhcCCCcEEEEEEeecccCCCC
Confidence 344443 3 79999999999 699999999999999999999 5799999999999998 89
Q ss_pred chHHHHHHHHhhhcCCCCceeEecccCCCCCCCC-CcceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC
Q 046862 168 SFLESISDHLTQVAGSNERETVAGVIDPRGIKIG-SRKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD 246 (275)
Q Consensus 168 ~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~L~~~-~~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~ 246 (275)
++|++|++.|..|.. +++.+.+..|+++.|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||.+||.++.+
T Consensus 158 ~~l~~l~~~L~~I~~-k~~~~~l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~ 236 (262)
T KOG0382|consen 158 PFLSKLTDALKRIKY-KGQSTTLPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFD 236 (262)
T ss_pred hhHHHHHHHhhcccc-CCcccccCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhC
Confidence 999999999999988 566777767999999987 899999999999999999999999999999999999999999854
Q ss_pred C----CCCCCCCCCCCCCCeEEEeC
Q 046862 247 E----SDTNARPQQPINLRIVKSYR 267 (275)
Q Consensus 247 ~----~~~N~Rp~Qpln~R~V~~~~ 267 (275)
. +.+||||+||||+|.|+++.
T Consensus 237 ~~~~~~~~N~Rp~Qpln~R~V~~~~ 261 (262)
T KOG0382|consen 237 EEGEPLVNNFRPLQPLNGRVVRASF 261 (262)
T ss_pred cccccccccCCcCcCCCCCeEeccc
Confidence 4 77999999999999999875
No 17
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=2.9e-62 Score=434.04 Aligned_cols=201 Identities=31% Similarity=0.556 Sum_probs=176.7
Q ss_pred CCCCCCceecCCceeeeccCCCccc-ccc--CCccEEeecCeeeEEEeeCCCceEEEcC----eEEEEeeeEecC-----
Q 046862 61 GRMQSPIDLLNERVQVVSHLGRLKR-SYK--PSNATLKNRGHDMMLQWEGGAGTLRING----TEYVLQQCHWHS----- 128 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~i~G----~~Y~l~q~HfH~----- 128 (275)
|++||||||.+..+..+..+++|.+ +|. +..++|.|+||++++.+.+ .+.++| .+|+|.||||||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~---~~~i~gg~L~~~Y~l~qfHfH~G~~~~ 77 (234)
T cd03117 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPD---GAKISGGGLPGTYKALQFHFHWGSNGS 77 (234)
T ss_pred CCcCCCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEecC---CceEeCCCCCCcEEEEEEEEEeCCCCC
Confidence 7899999999887776777888888 685 3678999999999999863 456666 799999999999
Q ss_pred -CCCCccccccccceeeeeeecCC-----------CceEEEEEEEecC-CCCchHHHHHHHHhhhcCCCCceeEecccCC
Q 046862 129 -PSEHTINGQRFALEAHMVHVSQD-----------GKIAVVGIMYKIG-RPDSFLESISDHLTQVAGSNERETVAGVIDP 195 (275)
Q Consensus 129 -gSEHtidG~~~~~E~HiVh~~~~-----------~~laVl~v~~~~~-~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l 195 (275)
||||+|||++|||||||||++.+ +++|||||||+++ .+|+.++.|++.+..+.. .+....+..|++
T Consensus 78 ~gSEH~idg~~~~~E~HlVH~n~~~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~ 156 (234)
T cd03117 78 PGSEHTIDGERYPMELHIVHIKESYNSLLEALKDSDGLAVLGFFIEEGEEENTNFDPLISALSNIPQ-KGGSTNLTPFSL 156 (234)
T ss_pred CCCcceeCCeecchheeeeEecCCCCCHHHHhcCCCceEEEEEEEEecCCCCccHHHHHHHHHhccc-CCceeecCCCCH
Confidence 89999999999999999999874 7899999999999 589999999999999876 344555667888
Q ss_pred CCCCCCC--cceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC------CCCCCCCCCCCCCCCeEEE
Q 046862 196 RGIKIGS--RKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD------ESDTNARPQQPINLRIVKS 265 (275)
Q Consensus 196 ~~L~~~~--~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~------~~~~N~Rp~Qpln~R~V~~ 265 (275)
.+|+|.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+||+|||.|++
T Consensus 157 ~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~ 234 (234)
T cd03117 157 RSLLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTDNGQPMVNNFRPVQPLNGRVVYA 234 (234)
T ss_pred HHHCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCHHHHHHHHHHhcccccCCCcccCCCCCCCCCCCCEEeC
Confidence 8888864 58999999999999999999999999999999999999998753 2468999999999999974
No 18
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=2.4e-61 Score=426.53 Aligned_cols=203 Identities=37% Similarity=0.660 Sum_probs=181.7
Q ss_pred CCCCCCceecCCceeeeccCCCccccccC-CccEEeecCeeeEEEeeCCCceEEEcC--eEEEEeeeEecC------CCC
Q 046862 61 GRMQSPIDLLNERVQVVSHLGRLKRSYKP-SNATLKNRGHDMMLQWEGGAGTLRING--TEYVLQQCHWHS------PSE 131 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~i~G--~~Y~l~q~HfH~------gSE 131 (275)
|++||||||.+..+.....+.+|++.|.. ..+++.|+||++++.+.++.+.+.++| .+|+|.|||||| |||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~~~~i~~~~l~~~y~l~q~HfH~G~~~~~gSE 80 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDDGGTLSGGGLPGRYKLVQFHFHWGSENSPGSE 80 (227)
T ss_pred CCCcCCeEECccceeECCCCCceeecccCCCceEEEECCeeEEEEecCCCceEeCCCCCCCEEEEEEEEecCCCCCCCCc
Confidence 78999999999877766678888887754 678999999999999876446788888 899999999999 999
Q ss_pred CccccccccceeeeeeecC----------CCceEEEEEEEecC-CCCchHHHHHHHHhhhcCCCCceeEecccCCCCCCC
Q 046862 132 HTINGQRFALEAHMVHVSQ----------DGKIAVVGIMYKIG-RPDSFLESISDHLTQVAGSNERETVAGVIDPRGIKI 200 (275)
Q Consensus 132 HtidG~~~~~E~HiVh~~~----------~~~laVl~v~~~~~-~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~L~~ 200 (275)
|+|||++|||||||||++. ++++|||||||+++ .+|++++.|++.+..+.. .+....+..+++..|+|
T Consensus 81 H~i~g~~y~~E~H~Vh~~~~~~~~~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~-~~~~~~~~~~~l~~llp 159 (227)
T cd00326 81 HTIDGKRYPLELHLVHYNSDYYSSEAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKY-KGKETTLPPFDLSDLLP 159 (227)
T ss_pred ceeCCEeccccceEEEECCCCCChhhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCc-CCcEeecCCCCHHHHCC
Confidence 9999999999999999998 78999999999999 689999999999998875 45566667789999988
Q ss_pred CC-cceEEEeecccCCCCccceEEEEeceeeccCHHHHHHHHHhccC---CCCCCCCCCCCCCCCeEE
Q 046862 201 GS-RKYYRYIGSLTIPPCTENVLWTIVRKVRTVTREQVRSLRVAVHD---ESDTNARPQQPINLRIVK 264 (275)
Q Consensus 201 ~~-~~yy~Y~GSLTtPPCsE~V~WiV~~~pi~IS~~Ql~~fr~l~~~---~~~~N~Rp~Qpln~R~V~ 264 (275)
.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+||+|||.|+
T Consensus 160 ~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~f~~l~~~~~~~~~~N~Rp~Q~ln~R~v~ 227 (227)
T cd00326 160 SSLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQLEAFRSLLDREGKPLVNNYRPVQPLNGRVVY 227 (227)
T ss_pred CCcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCeeC
Confidence 77 99999999999999999999999999999999999999998642 256899999999999984
No 19
>PF15240 Pro-rich: Proline-rich
Probab=40.14 E-value=23 Score=30.27 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhccccccccCCCCCcccC
Q 046862 8 VLFCCFFVVLLLLSGTAISQEVDDEIEFNYE 38 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Y~ 38 (275)
||+++|-|+||+|+. +.+.+.+-+|.
T Consensus 1 MLlVLLSvALLALSS-----AQ~~dEdv~~e 26 (179)
T PF15240_consen 1 MLLVLLSVALLALSS-----AQSTDEDVSQE 26 (179)
T ss_pred ChhHHHHHHHHHhhh-----ccccccccccc
Confidence 566666666665555 33345555664
No 20
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=37.44 E-value=8.8 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=11.9
Q ss_pred CCCccccccccceeee
Q 046862 130 SEHTINGQRFALEAHM 145 (275)
Q Consensus 130 SEHtidG~~~~~E~Hi 145 (275)
-||+|||+.|..+=-|
T Consensus 8 G~h~IdGk~y~v~kDl 23 (65)
T PF09211_consen 8 GEHTIDGKKYYVKKDL 23 (65)
T ss_dssp EEEEETTEEEEESS-E
T ss_pred ccEEECCEEEEecCCh
Confidence 3899999999876433
No 21
>PF15284 PAGK: Phage-encoded virulence factor
Probab=33.01 E-value=24 Score=24.71 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=12.0
Q ss_pred CCCcchhHHHHHHHHHHHHHhcccc
Q 046862 1 MEKIPIQVLFCCFFVVLLLLSGTAI 25 (275)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (275)
|.|++. -+++++.++.+.++++.
T Consensus 1 Mkk~ks--ifL~l~~~LsA~~FSas 23 (61)
T PF15284_consen 1 MKKFKS--IFLALVFILSAAGFSAS 23 (61)
T ss_pred ChHHHH--HHHHHHHHHHHhhhhHH
Confidence 556654 34455555555555543
No 22
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=29.97 E-value=49 Score=19.71 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcccccc
Q 046862 10 FCCFFVVLLLLSGTAISQ 27 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (275)
..+.++.+|++++|.+.|
T Consensus 9 ~lAi~c~LL~s~Ls~VkA 26 (30)
T PF11466_consen 9 WLAIVCVLLFSHLSSVKA 26 (30)
T ss_dssp HHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHHhhHHHh
Confidence 457788999999998876
No 23
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=27.67 E-value=30 Score=18.26 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhcc
Q 046862 8 VLFCCFFVVLLLLSGT 23 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (275)
|+..+.++++|..+++
T Consensus 2 Mk~vIIlvvLLliSf~ 17 (19)
T PF13956_consen 2 MKLVIILVVLLLISFP 17 (19)
T ss_pred ceehHHHHHHHhcccc
Confidence 4455566667777765
No 24
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.13 E-value=48 Score=25.32 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhcccc
Q 046862 8 VLFCCFFVVLLLLSGTAI 25 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (275)
++++++|+++|+++...+
T Consensus 7 llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 444445555555554433
No 25
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=24.52 E-value=1.3e+02 Score=18.94 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=10.7
Q ss_pred EEEEeeeEecCCC
Q 046862 118 EYVLQQCHWHSPS 130 (275)
Q Consensus 118 ~Y~l~q~HfH~gS 130 (275)
.|++++|.|.-|+
T Consensus 24 ~~~Ie~i~FaDGt 36 (43)
T PF06594_consen 24 SYRIEQIEFADGT 36 (43)
T ss_pred CCcEeEEEEcCCC
Confidence 6889999998765
No 26
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=23.45 E-value=3.1e+02 Score=22.32 Aligned_cols=60 Identities=18% Similarity=0.420 Sum_probs=35.3
Q ss_pred EEeecCeeeEEEeeCCCceEEEcCeEEEEeeeEecCCCCCcccccccccee-eeeeecC--------CCceEEEEEEEec
Q 046862 93 TLKNRGHDMMLQWEGGAGTLRINGTEYVLQQCHWHSPSEHTINGQRFALEA-HMVHVSQ--------DGKIAVVGIMYKI 163 (275)
Q Consensus 93 ~l~N~G~tv~v~~~~~~~~~~i~G~~Y~l~q~HfH~gSEHtidG~~~~~E~-HiVh~~~--------~~~laVl~v~~~~ 163 (275)
.+.|+=....+.+.+..|++ ..|.+|.| ||-| +.+||||. |+++... .+|-..|.|+.+-
T Consensus 38 ~v~dnlqqWii~v~Ga~GTL-Ya~e~~qL-q~~F---------~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~ 106 (161)
T KOG0427|consen 38 RVTDNLQQWIIEVTGAPGTL-YANETYQL-QVEF---------PEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDS 106 (161)
T ss_pred ecccchheeEEEEecCCcee-ecCcEEEE-EEec---------CCCCCCCCCeEEEecCCCCCCceecCCeEEEEeeccc
Confidence 45566666666666655555 45667766 4444 34578774 3333332 3667778888764
Done!