BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046865
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 117/279 (41%), Gaps = 26/279 (9%)
Query: 16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASL-RAMVEPSFGERSVINHT 71
V +IG GV G A++L+ F ++LI + + SL +A+++ S ++
Sbjct: 5 VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEA 64
Query: 72 DYLVNGRI--VASP---AINITENEVLTAEGRRVVYDYLVIATGHK--------DPVPKT 118
D+ RI + P A+++ + +G + D +VIATG + +P
Sbjct: 65 DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGV 124
Query: 119 RTER-LNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EF 176
T R Q SA +LIVGGG G E+A VT++ G LL
Sbjct: 125 VTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVA--TTARKLGLSVTILEAGDELLVRV 182
Query: 177 IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236
+G + G L V V+LG V S + + S G + AD +C VG
Sbjct: 183 LGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALIC----VG 238
Query: 237 SDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI 275
++ + L D ++VD + K +FA+GD+
Sbjct: 239 AEPADQLARQAGLACDRGVIVD-HCGATLAKGVFAVGDV 276
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 91 EVLTAEGRRVVYDYLVIATGHK---DPVPKTRTERLNQYQAEN------QKIKSARSILI 141
+++T E + YD L++ TG K P+P + R+ + N ++ A++I I
Sbjct: 95 DLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITI 154
Query: 142 VGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK-----VDV 196
+G G G ELA A V L+ R+L K DK +++K V++
Sbjct: 155 IGSGYIGAELAE--AYSNQNYNVNLIDGHERVLY----KYFDKEFTDILAKDYEAHGVNL 208
Query: 197 KLGQRVNLDSVSEGSDTYLTST--GDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGM 254
LG +V + E D +T T G IK+D LC G ++ LK + ++ +G
Sbjct: 209 VLGSKVA--AFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKV---AMLDNGA 263
Query: 255 LMVDENLRVKGQKNIFAIGD 274
++ DE + ++IFA GD
Sbjct: 264 IITDEYMH-SSNRDIFAAGD 282
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
Query: 76 NGRIVASPAINITENEV-LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI- 133
N I S A+ + E+ + L+ G R+ + ++IATG K V + + + N+
Sbjct: 128 NVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAK-IVSNSAIKGSDLCLTSNEIFD 186
Query: 134 --KSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS 191
K +SI+IVGGG GVE A K TL+H+G +L D +++
Sbjct: 187 LEKLPKSIVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVA 244
Query: 192 KKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
K + + V+ +E + + G TI AD L TG+ + L ++
Sbjct: 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNE 304
Query: 252 DGMLMVDENLRVKGQKNIFAIGDIT 276
G ++VDE + +I+A+GD+T
Sbjct: 305 FGAVVVDEKMTTN-VSHIWAVGDVT 328
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 94 TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
+A R+ D++++ATG +P + + N+ + R +L VGGG VE
Sbjct: 148 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 205
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQ---RVNLDS 206
AG A P KVTL ++ + +L ++ L + +++ + +V+L++
Sbjct: 206 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 265
Query: 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
+GS +G T+ D + G+ ++ L+ + L G + VDE R
Sbjct: 266 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 322
Query: 267 KNIFAIGDITD 277
NI+AIGDITD
Sbjct: 323 PNIYAIGDITD 333
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 94 TAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI---KSARSILIVGGGPTGVE 150
+A R+ D++++ATG +P + + N+ + R +L VGGG VE
Sbjct: 145 SAVKERLQADHILLATGSWPQMPAI--PGIEHCISSNEAFYLPEPPRRVLTVGGGFISVE 202
Query: 151 LAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQ---RVNLDS 206
AG A P KVTL ++ + +L ++ L + +++ + +V+L++
Sbjct: 203 FAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNT 262
Query: 207 VSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQ 266
+GS +G T+ D + G+ ++ L+ + L G + VDE R
Sbjct: 263 --DGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN-V 319
Query: 267 KNIFAIGDITD 277
NI+AIGDITD
Sbjct: 320 PNIYAIGDITD 330
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 24/225 (10%)
Query: 94 TAEGRRVVYDYLVIATGHKDPVPK---------TRTERLNQYQAENQKIKSAR--SILIV 142
T E R + YD LV+A G K P T L++ + I + +IV
Sbjct: 106 TGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIV 165
Query: 143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKK-VDVKLGQR 201
GGG G+E+A +A D T+V +++ K+ + L + K V V G++
Sbjct: 166 GGGFIGLEMAVSLA-DMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEK 224
Query: 202 VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL 261
V G + + T+ AD L G + +D L+ LD G ++VD +
Sbjct: 225 VVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLE--LDPRGAIIVDTRM 282
Query: 262 RVKGQKNIFAIGDITDIREI---KQGF-----LAQKHAQVAAKNL 298
R +IFA GD I + K GF +A + +V NL
Sbjct: 283 RTS-DPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNL 326
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
+VN R A PA + E R+ +++++A+G +P + + N+
Sbjct: 134 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 182
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
+ R +L VGGG VE AG P + +VTL ++G +L + D TL
Sbjct: 183 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RGFDHTLREE 237
Query: 190 ISKKVD---VKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
++K++ +++ + N V ++GS + +G + D + G+ S KD
Sbjct: 238 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDL 294
Query: 244 ILKDS--LDTDGMLMVDENLRVKGQKNIFAIGDITD 277
L+++ + +G + VDE R NI+AIGD+T+
Sbjct: 295 QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 329
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
+VN R A PA + E R+ +++++A+G +P + + N+
Sbjct: 135 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 183
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
+ R +L VGGG VE AG P + +VTL ++G +L + D TL
Sbjct: 184 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RGFDHTLREE 238
Query: 190 ISKKVD---VKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
++K++ +++ + N V ++GS + +G + D + G+ S KD
Sbjct: 239 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDL 295
Query: 244 ILKDS--LDTDGMLMVDENLRVKGQKNIFAIGDITD 277
L+++ + +G + VDE R NI+AIGD+T+
Sbjct: 296 QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 330
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 32/216 (14%)
Query: 74 LVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKI 133
+VN R A PA + E R+ +++++A+G +P + + N+
Sbjct: 133 VVNVRESADPASAVKE---------RLETEHILLASGSWPHMPNI--PGIEHCISSNEAF 181
Query: 134 ---KSARSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWL 189
+ R +L VGGG VE AG P + +VTL ++G +L + D TL
Sbjct: 182 YLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RGFDHTLREE 236
Query: 190 ISKKVD---VKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDT 243
++K++ +++ + N V ++GS + +G + D + G+ S KD
Sbjct: 237 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDL 293
Query: 244 ILKDS--LDTDGMLMVDENLRVKGQKNIFAIGDITD 277
L+++ + +G + VDE R NI+AIGD+T+
Sbjct: 294 QLQNAGVMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 328
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 137 RSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDV 196
+S++++GGG G+EL G +F K L G L F +K + +I K++
Sbjct: 171 KSLVVIGGGYIGIEL-GTAYANFGTKVTILEGAGEILSGF------EKQMAAIIKKRLK- 222
Query: 197 KLGQRVNLDSVSEGSD--------TYLTSTGD--TIKADCHFLCTGKPVGSDWLKDTILK 246
K G V +++++G++ TY + G+ TI AD + G+ +D L +
Sbjct: 223 KKGVEVVTNALAKGAEEREDGVTVTY-EANGETKTIDADYVLVTVGRRPNTDELGLEQIG 281
Query: 247 DSLDTDGMLMVDENLRVKGQKNIFAIGDI 275
+ G++ VD+ R NIFAIGDI
Sbjct: 282 IKMTNRGLIEVDQQCRTS-VPNIFAIGDI 309
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 137 RSILIVGGGPTGVELAGEIAVDFP-EKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVD 195
R +L VGGG VE AG P + +VTL ++G +L + D TL ++K++
Sbjct: 189 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----RGFDHTLREELTKQLT 243
Query: 196 ---VKLGQRVNLDSV---SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDS- 248
+++ + N V ++GS + +G + D + G+ S KD L+++
Sbjct: 244 ANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGR---SPRTKDLQLQNAG 300
Query: 249 -LDTDGMLMVDENLRVKGQKNIFAIGDITD 277
+ +G + VDE R NI+AIGD+T+
Sbjct: 301 VMIKNGGVQVDEYSRTN-VSNIYAIGDVTN 329
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 38/194 (19%)
Query: 13 NKRVVVIGGGVAGSLVAKSLQFSA---------DVTLID------PKEYF--EITWASLR 55
N VV++G G+AG VA L+ S D T+I K Y + T SL
Sbjct: 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 63
Query: 56 AMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD-- 113
++ +++ L+ G V AIN +V+ ++GR + YD LV+ATG +
Sbjct: 64 LRTPDAYAAQNI-----QLLGGTQVT--AINRDRQQVILSDGRALDYDRLVLATGGRPRP 116
Query: 114 -PVPKTRTERLNQYQ-------AE--NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKK 163
PV + N ++ AE +++ + ++++GGG G+E+A A+
Sbjct: 117 LPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAA-TAIK-ANMH 174
Query: 164 VTLVHKGSRLLEFI 177
VTL+ +R+LE +
Sbjct: 175 VTLLDTAARVLERV 188
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 38/194 (19%)
Query: 13 NKRVVVIGGGVAGSLVAKSLQFSA---------DVTLID------PKEYF--EITWASLR 55
N VV++G G+AG VA L+ S D T+I K Y + T SL
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 56 AMVEPSFGERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD-- 113
++ +++ L+ G V AIN +V+ ++GR + YD LV+ATG +
Sbjct: 63 LRTPDAYAAQNI-----QLLGGTQVT--AINRDRQQVILSDGRALDYDRLVLATGGRPRP 115
Query: 114 -PVPKTRTERLNQYQ-------AE--NQKIKSARSILIVGGGPTGVELAGEIAVDFPEKK 163
PV + N ++ AE +++ + ++++GGG G+E+A A+
Sbjct: 116 LPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAA-TAIK-ANMH 173
Query: 164 VTLVHKGSRLLEFI 177
VTL+ +R+LE +
Sbjct: 174 VTLLDTAARVLERV 187
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 127/307 (41%), Gaps = 55/307 (17%)
Query: 16 VVVIGGGVAGSLVA-KSLQFSADVTLIDPKEYF-----------EITW--ASLRAMVE-- 59
++ IGGG G VA K+ F V LI+ K ++ W + L V
Sbjct: 7 LIAIGGGSGGLAVAEKAAAFGKRVALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDA 66
Query: 60 PSFGERSVINHTDY--LVNGRIVASPAIN--------------------ITENEVLTAEG 97
P FG ++ D+ LV GR AIN + + EG
Sbjct: 67 PGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEG 126
Query: 98 RRVVYDYLVIATGHKDPVPKTRTERL----NQYQAENQKIKSARSILIVGGGPTGVELAG 153
+R+ D++VIATG + VP+ L + + A Q+ K + I+G G G+ELAG
Sbjct: 127 QRLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQQQPK---RVAIIGAGYIGIELAG 183
Query: 154 EIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV-NLDSVSEGSD 212
+ E VT+V RLL P + + ++ ++ L V L+ ++G+
Sbjct: 184 LLRSFGSE--VTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGT- 240
Query: 213 TYLTSTGDTIKA-DCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVD--ENLRVKGQKNI 269
T + G ++ D G+ + L + ++GM+ D +N V G +
Sbjct: 241 TLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPG---V 297
Query: 270 FAIGDIT 276
+A+GDIT
Sbjct: 298 YALGDIT 304
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 44/200 (22%)
Query: 15 RVVVIGG---GVAGSLVAKSLQFSADVTLIDPKE-----------YFEITWASL---RAM 57
++V+IG G++ ++ ++ A+++LID + YF T L R +
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYI 63
Query: 58 VEPSFGERSVINHTDYLVNGRIVASPAINITENEVLT----AEGRRVVYDYLVIATGHKD 113
E + + L+N +VA EN+++ E + YD L++ATG
Sbjct: 64 TEEELRRQKI----QLLLNREVVAXDV----ENQLIAWTRKEEQQWYSYDKLILATGASQ 115
Query: 114 PVPKTR---TERLNQYQ------AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKV 164
+ R TE+L +Y+ A +++++++ ++G GP G E A+DF K
Sbjct: 116 FSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXE-----AIDFLVKXK 170
Query: 165 TLVHKGSRLLEFIGPKAGDK 184
VH LE + PK DK
Sbjct: 171 KTVHVFES-LENLLPKYFDK 189
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 41/306 (13%)
Query: 15 RVVVIGGGVAGSLVAKSLQFSADVTLID--PKEYFEITWASLRAMVEPSFGERSVINHTD 72
+VV++G G G +AK L + +VT+ID P Y+ + + F R+ +
Sbjct: 10 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYS---KPMLSHYIAGFIPRNRL--FP 64
Query: 73 YLVNGRIVASPAINITENEVLTAEGRRVV--------YDYLVIATGHKDPVPKTRTERL- 123
Y ++ I + E L GR+VV YD LV+ATG + P+ + +
Sbjct: 65 YSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYL 124
Query: 124 ----NQYQAENQK--IKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI 177
+ A+ K I+++ +I+GGG G+ELAG +A V L+H+G+ L
Sbjct: 125 LTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFLGL- 181
Query: 178 GPKAGDKTLDWLISKKVDVKLGQRVNLDS--VSEGSDTYLTSTGDTIKADCHFLCTGKPV 235
D+ L +I ++ + G + L+S + + LT++G I+ G
Sbjct: 182 -----DEELSNMIKDMLE-ETGVKFFLNSELLEANEEGVLTNSG-FIEGKVKICAIGIVP 234
Query: 236 GSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGF--LAQKHAQV 293
D + + + T +++D+N R K+++AIGD + I G A + A+V
Sbjct: 235 NVDLAR----RSGIHTGRGILIDDNFRTSA-KDVYAIGDCAEYSGIIAGTAKAAMEQARV 289
Query: 294 AAKNLK 299
A LK
Sbjct: 290 LADILK 295
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 130/293 (44%), Gaps = 24/293 (8%)
Query: 87 ITENEVLTAE-GRRVVYDYLVIATGHKDPVP---KTRTERLNQYQAENQKIKSARSILIV 142
++E +VL E G + Y++IATG +P + ER+ + + +++V
Sbjct: 114 LSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVV 173
Query: 143 GGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISKKVDVKLGQRV 202
GGG G+EL + +V ++ R+L + + + + ++ G RV
Sbjct: 174 GGGVIGLELG--VVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRV 231
Query: 203 N-LDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENL 261
+ ++G+ L G+ ++AD + G+ ++ L S D G + VDE+L
Sbjct: 232 TAVVPEAKGARVELEG-GEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHL 290
Query: 262 RVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVG----ERESKMATYWPHS 317
R + +I+AIGD+ ++ LA K ++ ++ ++ G + ++ + + H
Sbjct: 291 RTR-VPHIYAIGDV-----VRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHP 344
Query: 318 AIAIVSLGRKDAVAQ-LPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDVAHA 369
IA V ++ AQ +P+ +G P R +G+T G +AHA
Sbjct: 345 EIAAVGYTEEELKAQGIPY--KVGKFPYSASGRARAMGETE---GFIKVLAHA 392
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 219 GDTIKADCHFLC---TGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDI 275
G+TI AD L TG P LK++ D +D G + D N+ N++A+GD
Sbjct: 254 GNTIPADITILLPPYTGNPA----LKNST-PDLVDDGGFIPTDLNMVSIKYDNVYAVGDA 308
Query: 276 TDIREIKQGFLAQKHAQVAAKNL 298
+ K G+LA ++AA++L
Sbjct: 309 NSMTVPKLGYLAVMTGRIAAQHL 331
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 24/162 (14%)
Query: 13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLID-----PKEYFEITWASLRAMVEPSF-- 62
N V++ G G AG VA SL+ + + LI+ P + ++ A L++ +P+
Sbjct: 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLM 60
Query: 63 --GERSVINHTDYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKD------- 113
E+ + L++ R+V+ I+ ++L A G + Y +LV+ATG ++
Sbjct: 61 FRPEKFFQDQAIELISDRMVS---IDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPN 117
Query: 114 -PVPKTRTER-LNQYQAENQKIKSARSILIVGGGPTGVELAG 153
+P R L++ + Q++ + ++++G G G+E A
Sbjct: 118 ASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAA 159
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 112/302 (37%), Gaps = 52/302 (17%)
Query: 87 ITENEVLTAEGRRVVYDYLVIATGHKDPVPKT----------------RTERLNQYQAEN 130
IT V T E YD L+++ G K VP T+R+ Y E
Sbjct: 126 ITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDE- 184
Query: 131 QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI 190
K R ++GGG GVE + E VTLV +++ I + +
Sbjct: 185 ---KKPRHATVIGGGFIGVEXVENLRERGIE--VTLVEXANQVXPPIDYEXAAYVHEH-- 237
Query: 191 SKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLD 250
K DV+L +D++ E +G I+ D L G S K L +L
Sbjct: 238 XKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDXLILAIGVQPESSLAKGAGL--ALG 295
Query: 251 TDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKM 310
G + V+E + +I+AIGD ++++ V E E+ +
Sbjct: 296 VRGTIKVNEKFQTS-DPHIYAIGDAIEVKD---------------------FVTETETXI 333
Query: 311 ATYWPHS----AIAIVSLGRKDAVAQLPFMTTIGCVPGLIKSRDLFVGKTRKQMGLEPDV 366
WP + +A + G D++ + T++ V L + K K++ + +V
Sbjct: 334 PLAWPANRQGRXLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEV 393
Query: 367 AH 368
H
Sbjct: 394 VH 395
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 150/336 (44%), Gaps = 47/336 (13%)
Query: 12 KNKRVVVIGGGVAGSLVAKS-LQFSADVTLIDPKEYFEITWASLRAMVEPSFG-ERSVIN 69
K+ +++++G G AG AK+ L D+T+I+ ++Y L ++ + + +I
Sbjct: 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIK 67
Query: 70 HTDYLV--NGRIVASP-AINITENEVLTA--EGRRVVYDYLVIATG---HKDPVPKTRTE 121
D+ N +++ S A +I N L G ++ Y+ L+IA+G +K VP E
Sbjct: 68 KNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA-DE 126
Query: 122 RLNQYQAEN-----QKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF 176
+ Y ++ + K+ I+GGG G+ELA I + ++ LE+
Sbjct: 127 IFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGII------LEY 180
Query: 177 IGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVG 236
+ D+ + K+D +LG ++ +S E GD I++ C G
Sbjct: 181 PLERQLDRDGGLFLKDKLD-RLGIKIYTNSNFE-------EMGDLIRSSCVITAVGVKPN 232
Query: 237 SDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGF--LAQKHAQVA 294
D++KDT + + ++V++++ K+I+A GD+ + G +A K +VA
Sbjct: 233 LDFIKDT----EIASKRGILVNDHMET-SIKDIYACGDVAEFYGKNPGLINIANKQGEVA 287
Query: 295 AKNLKVLMVGERESKMATYWPH-----SAIAIVSLG 325
N GE ++ + P S I+I+S G
Sbjct: 288 GLN----ACGE-DASYSEIIPSPILKVSGISIISCG 318
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 117/277 (42%), Gaps = 56/277 (20%)
Query: 96 EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEI 155
EGR ++ IA G+K P + E IK ++ I IVG G VEL I
Sbjct: 141 EGRNIL-----IAVGNKPVFPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVI 195
Query: 156 ---AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS--KKVDVKLGQRVNLDSVSEG 210
+D + +G+R+L K + ++ L + KK ++ + ++ + +
Sbjct: 196 KRLGID-----SYIFARGNRILR----KFDESVINVLENDMKKNNINIVTFADVVEIKKV 246
Query: 211 SDTYLT---STGDTIKADCHFL-CTGKPVGSDWLKDTILKDSLDT-DGMLMVDENLRVKG 265
SD L+ S G + H + C G+ ++ LK + K +++T + ++VDEN R
Sbjct: 247 SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLK--LEKLNVETNNNYIVVDENQRT-S 303
Query: 266 QKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPHSAIAIVSLG 325
NI+A+GD + +K ++ NL L ER L
Sbjct: 304 VNNIYAVGDCC---------MVKKSKEIEDLNLLKLYNEER----------------YLN 338
Query: 326 RKDAVAQLPF----MTTIGCVPGLIKSRDLFVGKTRK 358
+K+ V + F +T + G + + LF+ KTRK
Sbjct: 339 KKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRK 375
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 133/327 (40%), Gaps = 61/327 (18%)
Query: 17 VVIGGGVAGSLVAKSL---QFSADVTLIDPKEYFEITWASLRAMVEPSFGE------RSV 67
V+IGG AG A + +A+V ++ E + L ++ + R+V
Sbjct: 40 VIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNV 99
Query: 68 INHTD-YLVNGRIVASPAINITENEVLTAEGRRV------VYDYLVIATGHKDPVPKTRT 120
D Y ++ ++ TE +++ AE + YD L+IATG + +P+
Sbjct: 100 KTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEG 159
Query: 121 ERLNQYQAENQKIKSARSIL------------IVGGGPTGVELAGEIAVDFPEKKVTLVH 168
L + I A IL I+GGG G+E+A E V+ KKV ++
Sbjct: 160 RDLQGVHLL-KTIPDAERILKTLETNKVEDVTIIGGGAIGLEMA-ETFVELG-KKVRMIE 216
Query: 169 KGSR--------LLEFIGPKAGDKTLDWLISKKVDV-KLGQRVNLDSVSEGSDTYLTSTG 219
+ + E+I +A ++ L ++ V K +RV +G
Sbjct: 217 RNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG--------- 267
Query: 220 DTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITD-- 277
T KAD + G +D+L+ T ++ + G + V+ ++ Q +++A GD
Sbjct: 268 -TYKADLVLVSVGVKPNTDFLEGTNIR--TNHKGAIEVNAYMQTNVQ-DVYAAGDCATHY 323
Query: 278 --IREIKQ----GFLAQKHAQVAAKNL 298
I+EI G A K ++A N+
Sbjct: 324 HVIKEIHDHIPIGTTANKQGRLAGLNM 350
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 41/225 (18%)
Query: 80 VASPAINITENEVLTAEGRRVVYDYLVIATGHKD-----------PVPKTRT-ERLNQYQ 127
V + + + + V ++GR + Y LV+ATG PV RT E + Q
Sbjct: 80 VTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQ 139
Query: 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA-GDKTL 186
A ++ +LIVGGG G+ELA V+LV RL+ P D
Sbjct: 140 A---GLRPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLMSRAAPATLADFVA 194
Query: 187 DWLISKKVDVKLGQRV--NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTI 244
+ ++ VD++ + V ++D V L G I AD + G +
Sbjct: 195 RYHAAQGVDLRFERSVTGSVDGV------VLLDDGTRIAADMVVVGIG----------VL 238
Query: 245 LKDSLDTDGMLMVDENLRVKGQ-----KNIFAIGDITDIREIKQG 284
D+L L D+ + V +++A+GD+T R G
Sbjct: 239 ANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG 283
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 41/225 (18%)
Query: 80 VASPAINITENEVLTAEGRRVVYDYLVIATGHKD-----------PVPKTRT-ERLNQYQ 127
V + + + + V ++GR + Y LV+ATG PV RT E + Q
Sbjct: 80 VTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQ 139
Query: 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKA-GDKTL 186
A ++ +LIVGGG G+ELA V+LV RL+ P D
Sbjct: 140 A---GLRPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLMSRAAPATLADFVA 194
Query: 187 DWLISKKVDVKLGQRV--NLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTI 244
+ ++ VD++ + V ++D V L G I AD + G +
Sbjct: 195 RYHAAQGVDLRFERSVTGSVDGV------VLLDDGTRIAADMVVVGIG----------VL 238
Query: 245 LKDSLDTDGMLMVDENLRVKGQ-----KNIFAIGDITDIREIKQG 284
D+L L D+ + V +++A+GD+T R G
Sbjct: 239 ANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG 283
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 108/292 (36%), Gaps = 67/292 (22%)
Query: 84 AINITENEVLTAEGRRVVYDYLVIATGHK----------DPVPKTRTERLNQYQAENQKI 133
+I+ N V T G+++ YDYLVIATG K + E + Q + Q++
Sbjct: 80 SIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQEL 139
Query: 134 KSARSILIVGGGPTGVELAG--------------------EIAVDFPEKKVTLVHKG--- 170
+ +++G P GV G ++ + F + L H G
Sbjct: 140 YANPGPVVIGAIP-GVSXFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGG 198
Query: 171 ----SRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC 226
RL+E + ++ +DW+ V + ++ Y G+T +
Sbjct: 199 IGASKRLVEDL---FAERNIDWI----------ANVAVKAIEPDKVIYEDLNGNTHEVPA 245
Query: 227 HF-LCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI---- 281
F + G + + K + + M++V+ + KNIF +G +T I I
Sbjct: 246 KFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTP 305
Query: 282 ------KQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPH-SAIAIVSLGR 326
K G + ++ A A N+ V + + Y P SAI I G
Sbjct: 306 IPTGVPKTGMMIEQMAMAVAHNI----VNDIRNNPDKYAPRLSAICIADFGE 353
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 108/292 (36%), Gaps = 67/292 (22%)
Query: 84 AINITENEVLTAEGRRVVYDYLVIATGHK----------DPVPKTRTERLNQYQAENQKI 133
+I+ N V T G+++ YDYLVIATG K + E + Q + Q++
Sbjct: 80 SIDPDANTVTTQSGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQEL 139
Query: 134 KSARSILIVGGGPTGVELAG--------------------EIAVDFPEKKVTLVHKG--- 170
+ +++G P GV G ++ + F + L H G
Sbjct: 140 YANPGPVVIGAIP-GVSXFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGG 198
Query: 171 ----SRLLEFIGPKAGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADC 226
RL+E + ++ +DW+ V + ++ Y G+T +
Sbjct: 199 IGASKRLVEDL---FAERNIDWI----------ANVAVKAIEPDKVIYEDLNGNTHEVPA 245
Query: 227 HF-LCTGKPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREI---- 281
F + G + + K + + M++V+ + KNIF +G +T I I
Sbjct: 246 KFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTP 305
Query: 282 ------KQGFLAQKHAQVAAKNLKVLMVGERESKMATYWPH-SAIAIVSLGR 326
K G + ++ A A N+ V + + Y P SAI I G
Sbjct: 306 IPTGVPKTGMMIEQMAMAVAHNI----VNDIRNNPDKYAPRLSAIXIADFGE 353
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 218 TGDTIKADCHFLCTG---KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGD 274
T +TI TG +PV +D K ++S + L V++ L+VKG NIFAIGD
Sbjct: 315 TEETIPYGTLIWATGNKARPVITDLFKKIPEQNS--SKRGLAVNDFLQVKGSNNIFAIGD 372
Query: 275 ITDIREIKQGFLAQKHAQVAAKNL 298
+A + A+ AKN
Sbjct: 373 NAFAGLPPTAQVAHQEAEYLAKNF 396
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS-- 66
+ VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSN--PWVGVGWKERDDI 61
Query: 67 --VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 AFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS-- 66
+ VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSN--PWVGVGWKERDDI 61
Query: 67 --VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 AFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 218 TGDTIKADCHFLCTG---KPVGSDWLKDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGD 274
T +TI TG +PV +D K ++S + L V++ L+VKG NIFAIGD
Sbjct: 284 TEETIPYGTLIWATGNKARPVITDLFKKIPEQNS--SKRGLAVNDFLQVKGSNNIFAIGD 341
Query: 275 ITDIREIKQGFLAQKHAQVAAKNL 298
+A + A+ AKN
Sbjct: 342 NAFAGLPPTAQVAHQEAEYLAKNF 365
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS-- 66
+ VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSN--PWVGVGWKERDDI 61
Query: 67 --VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 AFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS-- 66
+ VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSN--PWVGVGWKERDDI 61
Query: 67 --VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 AFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS-- 66
+ VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSN--PWVGVGWKERDDI 61
Query: 67 --VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 AFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 13 NKRVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS-- 66
+ VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSN--PWVGVGWKERDDI 61
Query: 67 --VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 62 AFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 111
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 15 RVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS---- 66
VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGV--GWKERDDIAF 60
Query: 67 VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 61 PIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 108
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 15 RVVVIGGGVAGSLVA----KSLQFSADVTLIDPKEYFEITWASLRAMVEPSFGERS---- 66
VV++G G G A ++L +VTLI +YF+ ++ V + ER
Sbjct: 3 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGV--GWKERDDIAF 60
Query: 67 VINHTDYLVNGRIVASPA--INITENEVLTAEGRRVVYDYLVIATGHK 112
I H +A A I+ + A+G V YDYL+IATG K
Sbjct: 61 PIRHYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPK 108
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 29/204 (14%)
Query: 90 NEVLTAEGRRVVYDYLVIATGHK---DPVP---KTRTERLNQYQAENQKIKSARSILIVG 143
+++ TA G + +++ATG K VP + RT+ + + + + + ++G
Sbjct: 92 HQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIG 151
Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTL-DWLIS-KKVDVKLGQR 201
GG +GVE A ++A + + LLEF D+ L D L S K VD+ L +
Sbjct: 152 GGNSGVEAAIDLAG---------IVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQ 202
Query: 202 VNLDSVSEGSDTYLTSTGDTIKADCH-------FLCTGKPVGSDWLKDTILKDSLDTDGM 254
+ +GS D + D H F+ G ++WL+ + ++ + G
Sbjct: 203 TT-EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRM---GE 258
Query: 255 LMVDENLRVKGQKNIFAIGDITDI 278
+++D K +FA GD T +
Sbjct: 259 IIIDAKCETN-VKGVFAAGDCTTV 281
>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
pdb|2E4G|B Chain B, Rebh With Bound L-Trp
pdb|2OAL|A Chain A, Rebh With Bound Fad
pdb|2OAL|B Chain B, Rebh With Bound Fad
pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
Length = 550
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 5 RQQQSEGKNKRVVVIGGGVAG----SLVAKSLQFSADVTLI 41
R GK +++++GGG AG S + K+LQ +AD+TL+
Sbjct: 17 RGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLL 57
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 37/265 (13%)
Query: 85 INITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRT---ERLNQYQAENQ 131
+++ +N V +G ++ Y+ +IATG K+RT ++ +++ +
Sbjct: 116 LDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK 175
Query: 132 KIKSARSILIVGGGPTGVELA-----------GEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
+ +SI I+GGG G ELA E+ FPEK + G L E++
Sbjct: 176 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG----NMGKILPEYL--- 228
Query: 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL 240
+ T++ + + V V V VS G G ++ D G +
Sbjct: 229 -SNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 287
Query: 241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300
K L+ D G + N ++ + NI+ GD +IK G +H A + +
Sbjct: 288 KTGGLEIDSDFGGFRV---NAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGR- 343
Query: 301 LMVGERESKMATYWPHSAIAIVSLG 325
+ GE + A + H ++ LG
Sbjct: 344 -LAGENMTGAAKPYWHQSMFWSDLG 367
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 37/265 (13%)
Query: 85 INITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRT---ERLNQYQAENQ 131
+++ +N V +G ++ Y+ +IATG K+RT ++ +++ +
Sbjct: 134 LDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK 193
Query: 132 KIKSARSILIVGGGPTGVELA-----------GEIAVDFPEKKVTLVHKGSRLLEFIGPK 180
+ +SI I+GGG G ELA E+ FPEK + G L E++
Sbjct: 194 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG----NMGKILPEYL--- 246
Query: 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL 240
+ T++ + + V V V VS G G ++ D G +
Sbjct: 247 -SNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 305
Query: 241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300
K L+ D G + N ++ + NI+ GD +IK G +H A + +
Sbjct: 306 KTGGLEIDSDFGGFRV---NAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGR- 361
Query: 301 LMVGERESKMATYWPHSAIAIVSLG 325
+ GE + A + H ++ LG
Sbjct: 362 -LAGENMTGAAKPYWHQSMFWSDLG 385
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 128 AENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF 176
A + + S +LIVG GP G+ LA ++A FP+ + +V + +E
Sbjct: 24 AHTEAVPSQVDVLIVGCGPAGLTLAAQLAA-FPDIRTCIVEQKEGPMEL 71
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 135 SARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173
S++ ++IVGGG TG+ A FP+ +TL+ G RL
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 90 NEVLTAEGRRVVYDYLVIATGHK---DPVP---KTRTERLNQYQAENQKIKSARSILIVG 143
+++ TA G + ++IATG K VP + RT+ + + + + + ++G
Sbjct: 303 HQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIG 362
Query: 144 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLIS--KKVDVKLGQR 201
GG +GVE A ++A + + LLEF D+ L + K VD+ L +
Sbjct: 363 GGNSGVEAAIDLAG---------IVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQ 413
Query: 202 VNLDSVSEGSDTYLTSTGDTIKADCH-------FLCTGKPVGSDWLKDTILKDSLDTDGM 254
+ +GS D + D H F+ G + WL+ + ++ + G
Sbjct: 414 TT-EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRM---GE 469
Query: 255 LMVDENLRVKGQKNIFAIGDITDI 278
+++D K +FA GD T +
Sbjct: 470 IIIDAKCETS-VKGVFAAGDCTTV 492
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 189
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 107 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 141
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 140
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45
K +V++IG GV+G A+ LQ F DVTL++ ++
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 311
>pdb|3BBN|D Chain D, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 201
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 63 GERSVINHTDYLVNGRIVASPAINITENEVLTAE 96
G R ++NH LVNGRIV P+ + + A
Sbjct: 106 GARQLVNHRHILVNGRIVDIPSYRCKPQDTIMAR 139
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 12 KNKRVVVIGGGVAGSLVAKSL-QFSADVTLID--PKEYFEITW 51
K KRVV IGGG +G++ A S+ ++ +VT+I+ PK E +
Sbjct: 154 KGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAY 196
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests
A Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests
A Mechanism For Regioselective Chlorination
Length = 538
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 14 KRVVVIGGGVAGSLVA----KSLQFSADVTLID 42
K +V++GGG AG + A ++LQ A++TLI+
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIE 38
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 14 KRVVVIGGGVAGSLVA----KSLQFSADVTLID 42
K +V++GGG AG + A ++LQ A++TLI+
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQANITLIE 38
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 5 RQQQSEGKNKRVVVIGGGVAGSLVAKSLQFSAD--VTLI-------DPKEYFEITWASLR 55
R + N +V++GGG AGSL+A L D V LI DP + W +L+
Sbjct: 9 RAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQ 68
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 185 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 244
Query: 193 KVDVKLGQR-VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ + + ++G+ + +G D L G+ S L+ +
Sbjct: 245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAK 304
Query: 252 DGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 305 NGAIKVDAYSKTN-VDNIYAIGDVTD 329
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 185 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 244
Query: 193 KVDVKLGQR-VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ + + ++G+ + +G D L G+ S L+ +
Sbjct: 245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAK 304
Query: 252 DGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 305 NGAIKVDAYSKTN-VDNIYAIGDVTD 329
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 186 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 245
Query: 193 KVDVKLGQR-VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ + + ++G+ + +G D L G+ S L+ +
Sbjct: 246 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAK 305
Query: 252 DGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 306 NGAIKVDAYSKTN-VDNIYAIGDVTD 330
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 134 KSARSILIVGGGPTGVELAGEI-AVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK 192
++ + L VGGG +E AG A +V L ++G +L + + + L +
Sbjct: 186 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 245
Query: 193 KVDVKLGQR-VNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDT 251
++V+ + + ++G+ + +G D L G+ S L+ +
Sbjct: 246 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAK 305
Query: 252 DGMLMVDENLRVKGQKNIFAIGDITD 277
+G + VD + NI+AIGD+TD
Sbjct: 306 NGAIKVDAYSKTN-VDNIYAIGDVTD 330
>pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (e.c.2.7.7.7) Mutant/dna
Complex
pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And
Manganese
pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc
Only
pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And
Manganese
pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only
pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate
And Europium (Iii) Ion
pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Short Dna Fragment Carrying 2'-0-
Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3'
pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna Tetramer Carrying
2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna
Polymerase I Complexed With DTMP
pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna
Polymerase I Complexed With Deoxynucleoside Triphosphate
And Pyrophosphate
Length = 605
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I
Klenow Fragment With Dna
Length = 605
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA
Complex
Length = 605
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 118 TRTERLNQYQAENQKIKSARSILIVGGGP-TGVELAGEIAVDFPEKKVTLVHKG------ 170
+ T++L E Q IK + GG P T E+ E+A+D+P KV L ++G
Sbjct: 258 SSTKQLQTILFEKQGIKPLKKT--PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKS 315
Query: 171 ---SRLLEFIGPKAG 182
+L I PK G
Sbjct: 316 TYTDKLPLMINPKTG 330
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 33/207 (15%)
Query: 91 EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAENQKIKS----ARSILIVGGGP 146
+ L G + D+++IATG + P +Y ++ + + +VG G
Sbjct: 121 KTLEVNGETITADHILIATGGRPSHPDIPGV---EYGIDSDGFFALPALPERVAVVGAGY 177
Query: 147 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLISK---KVDVKLGQRVN 203
VELAG I G++ F+ A ++ D +IS+ +V G +++
Sbjct: 178 IAVELAGVIN-----------GLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLH 226
Query: 204 LDSV-------SEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLM 256
+++ ++GS T G + DC G+ +D + + G ++
Sbjct: 227 TNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIV 286
Query: 257 VD--ENLRVKGQKNIFAIGDITDIREI 281
VD +N ++G I+A+GD T E+
Sbjct: 287 VDKYQNTNIEG---IYAVGDNTGAVEL 310
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 37/265 (13%)
Query: 85 INITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRT---ERLNQYQAENQ 131
+++ N V +G ++ ++ +IATG K+RT ++ ++A +
Sbjct: 153 LDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRALEK 212
Query: 132 KIKSARSILIVGGGPTGVELAG-----------EIAVDFPEKKVTLVHKGSRLLEFIGPK 180
+ +SI ++GGG G ELA E+ FPEK + G L +++
Sbjct: 213 ISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKG----NMGKILPQYL--- 265
Query: 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL 240
+ T++ + + V V V VS G G ++ D G +
Sbjct: 266 -SNWTMEKVKREGVKVMPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELA 324
Query: 241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300
K L+ D G + N ++ + NI+ GD +IK G +H A + +
Sbjct: 325 KTGGLEIDSDFGGFRV---NAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGR- 380
Query: 301 LMVGERESKMATYWPHSAIAIVSLG 325
+ GE + A + H ++ LG
Sbjct: 381 -LAGENMTGAAKPYWHQSMFWSDLG 404
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 37/265 (13%)
Query: 85 INITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRT---ERLNQYQAENQ 131
+++ N V +G ++ ++ +IATG K+RT ++ ++A +
Sbjct: 158 LDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRALEK 217
Query: 132 KIKSARSILIVGGGPTGVELAG-----------EIAVDFPEKKVTLVHKGSRLLEFIGPK 180
+ +SI ++GGG G ELA E+ FPEK + G L +++
Sbjct: 218 ISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKG----NMGKILPQYL--- 270
Query: 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL 240
+ T++ + + V V V VS G G ++ D G +
Sbjct: 271 -SNWTMEKVKREGVKVMPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELA 329
Query: 241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300
K L+ D G + N ++ + NI+ GD +IK G +H A + +
Sbjct: 330 KTGGLEIDSDFGGFRV---NAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGR- 385
Query: 301 LMVGERESKMATYWPHSAIAIVSLG 325
+ GE + A + H ++ LG
Sbjct: 386 -LAGENMTGAAKPYWHQSMFWSDLG 409
>pdb|1YTL|A Chain A, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|B Chain B, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|C Chain C, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
pdb|1YTL|D Chain D, Crystal Structure Of Acetyl-Coa DecarboxylaseSYNTHASE
COMPLEX EPSILON Subunit 2
Length = 174
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 114 PVPKTRTERLNQYQAENQKIKSARSILIVGGGPTGVELAGEIAVDFPEKKVTLVHKGSRL 173
P PK T N K+ R +LIVG P + E F EK +T+V GS +
Sbjct: 14 PGPKMATLLEKGKPVANMIKKAKRPLLIVG--PDMTDEMFERVKKFVEKDITVVATGSAI 71
Query: 174 LEFIGPKAGDKT 185
FI G+K
Sbjct: 72 TRFIDAGLGEKV 83
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 9 SEGKNKRVVVIGGGVAGSLVAKSLQFSADVTLI-------DPKEYFEITWAS 53
++G + V++GGG AG+ VA L + +VT++ +P++ EIT S
Sbjct: 2 TDGSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPS 53
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 37/265 (13%)
Query: 85 INITENEVLTAEGRRVVYDYLVIATG----------HKDPVPKTRT---ERLNQYQAENQ 131
+++ N V +G ++ ++ +IATG K+RT ++ ++A +
Sbjct: 134 LDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRALEK 193
Query: 132 KIKSARSILIVGGGPTGVELAG-----------EIAVDFPEKKVTLVHKGSRLLEFIGPK 180
+ +SI ++GGG G ELA E+ FPEK + G L +++
Sbjct: 194 ISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEKG----NMGKILPQYL--- 246
Query: 181 AGDKTLDWLISKKVDVKLGQRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWL 240
+ T++ + + V V V VS G G ++ D G +
Sbjct: 247 -SNWTMEKVKREGVKVMPNAIVQSVGVSGGRLLIKLKDGRKVETDHIVTAVGLEPNVELA 305
Query: 241 KDTILKDSLDTDGMLMVDENLRVKGQKNIFAIGDITDIREIKQGFLAQKHAQVAAKNLKV 300
K L+ D G + N ++ + NI+ GD +IK G +H A + +
Sbjct: 306 KTGGLEIDSDFGGFRV---NAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGR- 361
Query: 301 LMVGERESKMATYWPHSAIAIVSLG 325
+ GE + A + H ++ LG
Sbjct: 362 -LAGENMTGAAKPYWHQSMFWSDLG 385
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MESQRQQQSEGKNKRVVVIGGGVAGSLVAKSL-QFSADVTLIDPKE 45
ME+Q + G VVVIGGG++G AK L ++ V +++ ++
Sbjct: 1 MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARD 46
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 78/198 (39%), Gaps = 26/198 (13%)
Query: 93 LTAEGRRVVYDYLVIATG-HKDPVPKTRTERLNQYQAENQKIKS-ARSILIVGGGPTGVE 150
L A G+ V + +VIA G H P L E + + SILI GGG VE
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVE 184
Query: 151 LAG---EIAVDFPEKKVTLVHKGSRLLEFI------GPKAG--DKTLDWLISKKVDVKLG 199
A + V K TL+++G +L G A +K + L +
Sbjct: 185 FANIFHGLGV-----KTTLIYRGKEILSRFDQDXRRGLHAAXEEKGIRILCEDII----- 234
Query: 200 QRVNLDSVSEGSDTYLTSTGDTIKADCHFLCTGKPVGSDWLKDTILKDSLDTDGMLMVDE 259
Q V+ D ++G T I AD L G+ ++ L + G ++VD
Sbjct: 235 QSVSAD--ADGRRVATTXKHGEIVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIVDA 292
Query: 260 NLRVKGQKNIFAIGDITD 277
R I+A+GD+TD
Sbjct: 293 FSRTS-TPGIYALGDVTD 309
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 139 ILIVGGGPTGVELA--------GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTLDWLI 190
+LI+GGGP G+ LA G + V+ + +T G+ IGP++ + W +
Sbjct: 29 VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGT-----IGPRSMELFRRWGV 83
Query: 191 SKKV 194
+K++
Sbjct: 84 AKQI 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,438,572
Number of Sequences: 62578
Number of extensions: 422191
Number of successful extensions: 1583
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1475
Number of HSP's gapped (non-prelim): 137
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)